BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013079
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 205/371 (55%), Gaps = 20/371 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
A TAS G+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD
Sbjct: 81 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
+ E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
P +LGAD+VVHS++K+I+G D+I G + G ++ + G + G M+P A+
Sbjct: 196 PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGXMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
G++ ++ +A R M N + +AVSLG ETL+ + EE+ AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 20/371 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
A TAS G+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD
Sbjct: 81 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
+ E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
P +LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
G++ ++ +A R M N + +AVSLG ETL+ + EE+ AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 20/371 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
A TAS G+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD
Sbjct: 81 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
+ E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
P +LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
G++ ++ +A R M N + +AVSLG ETL+ + EE+ AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 203/371 (54%), Gaps = 20/371 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
A TAS G+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD
Sbjct: 81 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
+ E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
P +LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
G++ ++ +A R M N + +AVSLG ETL+ + EE+ AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 20/371 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
A TAS G+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD
Sbjct: 81 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP
Sbjct: 137 GKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
P +LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
G++ ++ +A R M N + +AVSLG ETL+ + EE+ AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 206/392 (52%), Gaps = 26/392 (6%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
G EA AS GM AI+S L L G V+ TLYG T A L H +
Sbjct: 79 GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
VD++D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
+ P LGAD+VVHS +K++SG DI AG V G LV+ + QG + G ++P
Sbjct: 194 LQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
A L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
+A GIS GLVR+SVG L +D + ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 24/386 (6%)
Query: 62 IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA 121
I ++TF + FAG+ +IY+R NPTV NL ++A LE TEA T+
Sbjct: 29 IYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATS 84
Query: 122 SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV 181
S GM AI++ ++ + +G H+++ LYG THAL H + I F++ + V
Sbjct: 85 S---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTAIPGEV 140
Query: 182 NSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLSPARLG 239
+ + TK++YFE+ +NPTL + ++ + + AH + GV V+ DNTF SP++ +P G
Sbjct: 141 KKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFG 199
Query: 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 299
DVVVHS +K+I+G D++AG +CG A+L+ + + G + G ++P A+ ++ +
Sbjct: 200 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV--GIKDITGSVISPHDAWLITRGL 257
Query: 300 PHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 357
L +RMK A+ A +K KV YPG EDH H++ K +G ++
Sbjct: 258 STLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRM---YGSMITF 314
Query: 358 DMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAG 416
+++ E A +L++ L+ +AVSLG E+L+ + EE+ AGI+ G
Sbjct: 315 ILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDG 370
Query: 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442
++R+SVG + D+ + F++ L +
Sbjct: 371 MIRLSVG-IEDADELIADFKQGLDAL 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
G EA AS GM AI+S L L G V+ TLYG T A L H +
Sbjct: 79 GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
VD++D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
+ P LGAD+VVHS + ++SG DI AG V G LV+ + QG + G ++P
Sbjct: 194 LQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
A L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
+A GIS GLVR+SVG L +D + ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
G EA AS GM AI+S L L G V+ TLYG T A L H +
Sbjct: 79 GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
VD++D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
+ P LGAD+VVHS + ++SG DI AG V G LV+ + QG + G ++P
Sbjct: 194 LQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
A L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
+A GIS GLVR+SVG L +D + ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 196/391 (50%), Gaps = 26/391 (6%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HGG + +T VM P +A + F YSR NPT R +AALEG
Sbjct: 26 HGGQSPD---PSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGG 82
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
A+ AS GM+A S+V M+L +G HVVA LYGGT L R + +FVD
Sbjct: 83 TRAFAFAS---GMAATSTV-MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL 233
++D +AI + TK+++ E+ +NP L + +I ++ +A G+ VVDNTF SP++
Sbjct: 139 LTDPAAFKAAI-RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ 197
Query: 234 SPARLGADVVVHSISKFISGGADIIAG-AVCGP-ANLVNSMMDLHQGALMLLGPTMNPKV 291
P LGAD+VVHS +K+++G +D++ G AV G A L M L +G P
Sbjct: 198 RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS----IGGVQGPFD 253
Query: 292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY 349
+F + L LRM+ HC AL A+ ++ KV+YPGL HP H L K +
Sbjct: 254 SFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAK---RQMS 310
Query: 350 GFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEK 408
GFGG++ + ++ + A R + + +A SLG E+L+ + +
Sbjct: 311 GFGGIVSIVLKGGFDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARR 366
Query: 409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
GIS LVR+SVG D R E+AL
Sbjct: 367 EQLGISDALVRLSVGIEDLGDLR-GDLERAL 396
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 185/352 (52%), Gaps = 21/352 (5%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
IYSR NPTV + ++EG A +A+ +GM AISS + G H++A TLY
Sbjct: 52 IYSRLGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLY 108
Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
G T +L TH+ PR I +D SD E V +A + TK++Y ES +NPT V++I +
Sbjct: 109 GCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGI 166
Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLV 269
+ + H++G +VVD TF SP L P LGAD+ +HS+SK+I+G D+I G A +
Sbjct: 167 AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDI 226
Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKV 327
++ + A G M P AF + + L +RM+ H L A+ +++ +KV
Sbjct: 227 ATIKFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282
Query: 328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 387
+PGLE P H++ K G+G +M++ E A +LM +L+ +AVSLG
Sbjct: 283 NHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGC 335
Query: 388 YETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
+TL+ + GI+ LVR+SVG + +D + ++AL
Sbjct: 336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 184/352 (52%), Gaps = 21/352 (5%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
IYSR NPTV + ++EG A +A+ +GM AISS + G H++A TLY
Sbjct: 52 IYSRLGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLY 108
Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
G T +L TH+ PR I +D SD E V +A + TK++Y ES +NPT V++I +
Sbjct: 109 GCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGI 166
Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLV 269
+ + H++G +VVD TF SP L P LGAD+ +HS+S +I+G D+I G A +
Sbjct: 167 AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSXYINGHGDVIGGVSSAKTAEDI 226
Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKV 327
++ + A G M P AF + + L +RM+ H L A+ +++ +KV
Sbjct: 227 ATIKFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282
Query: 328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 387
+PGLE P H++ K G+G +M++ E A +LM +L+ +AVSLG
Sbjct: 283 NHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGC 335
Query: 388 YETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
+TL+ + GI+ LVR+SVG + +D + ++AL
Sbjct: 336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 20/325 (6%)
Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
L ++A LE EA TAS GM AI++ + +G H+++ LYG THAL H
Sbjct: 3 LEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQL- 58
Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTV 222
R + F+D++ + + + T+++YFE+ +NPTL V +I + + A K + V
Sbjct: 59 RKFGVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILV 117
Query: 223 VVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 281
+VDNTF SP++ +P LG D+VVHS +K+I+G D++AG VC A+++ + QG
Sbjct: 118 IVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKS--QGIKD 175
Query: 282 LLGPTMNPKVAFELSERIPHLGLRMK---EHCHRALIFARRMKKLGLKVLYPGLEDHPHH 338
+ G ++P A+ ++ L +R+K E+ + F K + KV YPGL DHP H
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVK-KVYYPGLPDHPGH 234
Query: 339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXX 398
E+ K FG ++ D++ EKA ++++ + +AVSLG E+L+
Sbjct: 235 EIAKKQMKM---FGSMIAFDVDGLEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASM 287
Query: 399 XXXELNAEEKALAGISAGLVRMSVG 423
+ EE+ AG++ L+R+SVG
Sbjct: 288 THAGVPKEEREAAGLTDNLIRLSVG 312
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 175/340 (51%), Gaps = 19/340 (5%)
Query: 88 RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA 147
R F Y R+ NPT + L +++ALEG E+ AS GM A + +L+ L +GGH+V
Sbjct: 103 RASFEYGRYGNPTTVVLEEKISALEGAESTLLMAS---GMCASTVMLLALVPAGGHIVTT 159
Query: 148 RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 207
Y T + P+ IT T +D +D + A+ Q + + + ES +NP L +
Sbjct: 160 TDCYRKTRIFIETILPKM-GITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD 218
Query: 208 IPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 266
I +S+L H+KG V +D TF +PL LGAD+V+HS +KF+ G D++AG + GP
Sbjct: 219 IELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL 278
Query: 267 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-- 324
LV+ + +LH +LG +NP A+ + + L LR+++ AL A ++
Sbjct: 279 KLVSEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 334
Query: 325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV 383
V YPGL+ HP H + K GFGG + +++ + + ++ L + ++A
Sbjct: 335 RHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDLLTTAKFVDAL----KIPYIAP 387
Query: 384 SLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
S G E+++ +L+ ++A GI LVR S G
Sbjct: 388 SFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG 427
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 179/369 (48%), Gaps = 24/369 (6%)
Query: 78 RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL 137
+ FAGEL D ++YSR+ NPTV ++ +EG AA+ TAS GM+A+ + L L
Sbjct: 64 KSFAGEL----DHYVYSRYGNPTVSVFEERLRLIEGAPAAFATAS---GMAAVFTSLGAL 116
Query: 138 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197
+G +VAAR+L+G + + PR + T FVD D A+ T+ ++FE+
Sbjct: 117 LGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFET 174
Query: 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGAD 256
SNP ++ +I ++ LAH G VV+DN F +PL+ LG DVVV+S + I G
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 257 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316
++ GA+ G ++ + Q + GP M+ A+ L + + L +R++ A
Sbjct: 235 VLGGAILGDREYIDGPV---QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRI 291
Query: 317 ARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL---CLDMETEEKANRLMNY 371
A + V YP L HP ++L A ++ GG + LD + R
Sbjct: 292 AEFLNGHPSVRWVRYPYLPSHPQYDL----AKRQMSGGGTVVTFALDCPEDVAKQRAFEV 347
Query: 372 LQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQR 431
L ++ +LG ++L+ + E +A G+ G+VR+SVG L D
Sbjct: 348 LDKMRLID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDDL 405
Query: 432 WSQFEKALS 440
+ ++ALS
Sbjct: 406 IADIDRALS 414
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 15/333 (4%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
YSR NPT + R +A LEG A T GMSAI V G +VA YG
Sbjct: 46 YSRRGNPTRDVVQRALAELEGGAGAVLT---NTGMSAIHLVTTVFLKPGDLLVAPHDCYG 102
Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
G++ L R C FVD D + + +A+ + + K++ ES SNP L V +I ++
Sbjct: 103 GSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKIC 160
Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
LA + G VVDNTF SP + +P LGAD+V+HS + +++G +D++AG V V +
Sbjct: 161 HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVT 220
Query: 272 MMDLHQGALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 330
+ + + G + + L +P + L + +A++ + + L K+ +P
Sbjct: 221 ELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRN--AQAIVKYLQTQPLVKKLYHP 278
Query: 331 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 390
L ++ HE+ A ++ GFG +L +++ +E+ L +L + F +A SLG E+
Sbjct: 279 SLPENQGHEI---AARQQKGFGAMLSFELDGDEQT--LRRFLGGLSLF-TLAESLGGVES 332
Query: 391 LMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
L+ + E +A AGIS L+R+S G
Sbjct: 333 LISHAATMTHAGMAPEARAAAGISETLLRISTG 365
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 177/356 (49%), Gaps = 31/356 (8%)
Query: 75 TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVL 134
T ++ A E GP + Y+R NPT L +A L+ + A+C S GM+A+S+V
Sbjct: 113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTS---GMAALSAV- 164
Query: 135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 194
L +G +VA +YGG+ LL+ PR+ + V+ + + V +AI +TK+++
Sbjct: 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAI-GPQTKLVW 222
Query: 195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG 253
ES +NP +++I ++S +AH +G V+VDN+ SP++ P LGAD+V+HS +KFI+G
Sbjct: 223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAG 282
Query: 254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 313
+D++AG + + + Q + G + P + I + LR+++ A
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALRIEKQQENA 339
Query: 314 LIFA------RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 367
A R+K KV Y GL DHP H L S A G G + +
Sbjct: 340 RKIAMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA---- 388
Query: 368 LMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
L +L ++ +AVS G ++L+ + AE + G++ LVR+S G
Sbjct: 389 LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 25/373 (6%)
Query: 58 VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
V E + V+ P ++ F F YSR NPT L + +AAL+G A
Sbjct: 26 VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDG--AK 83
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVD 174
YC A +G++A ++ L +G ++ +YGGT+ +F + + + +FVD
Sbjct: 84 YCLAF-ASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVD 137
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLV 232
S +++ +AI TK+++ E+ +NPT V +I + + H G + +VVDNTF SP
Sbjct: 138 CSKIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 196
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
P LGAD+ ++S +K+++G +D++ G V +++ + Q + LG +P
Sbjct: 197 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDC 253
Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
+ + + L +RM++H + A+ ++ KV+YPGL HP HEL+K G
Sbjct: 254 YLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---G 310
Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 410
G++ ++ + + +L+N F +A SLG +E+L + ++ +
Sbjct: 311 CTGMVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDV 367
Query: 411 AGISAGLVRMSVG 423
GIS L+R+SVG
Sbjct: 368 LGISDTLIRLSVG 380
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 25/373 (6%)
Query: 58 VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
V E + V+ P ++ F F YSR NPT L + +AAL+G A
Sbjct: 30 VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDG--AK 87
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVD 174
YC A +G++A ++ L +G ++ +YGGT+ +F + + + +FVD
Sbjct: 88 YCLAF-ASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVD 141
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLV 232
S +++ +AI TK+++ E+ +NPT V +I + + H G + +VVDNTF SP
Sbjct: 142 CSKIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 200
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
P LGAD+ ++S +K+++G +D++ G V +++ + Q + LG +P
Sbjct: 201 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDC 257
Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
+ + + L +RM++H + A+ ++ KV+YPGL HP HEL+K G
Sbjct: 258 YLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---G 314
Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 410
G++ ++ + + +L+N F +A SLG +E+L + ++ +
Sbjct: 315 CTGMVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDV 371
Query: 411 AGISAGLVRMSVG 423
GIS L+R+SVG
Sbjct: 372 LGISDTLIRLSVG 384
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 189/389 (48%), Gaps = 45/389 (11%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HG V I S TF P A +G + YSR NP NL R +AALE
Sbjct: 22 HGSVIEPISLSTTFKQSSP-------ANPIGT----YEYSRSQNPNRENLERAVAALENA 70
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTT 171
+ +S SA ++ ++Q G H V+ +YGGTH +F + N + T+
Sbjct: 71 QYGLAFSSG----SATTATILQSLPQGSHAVSIGDVYGGTH----RYFTKVANAHGVETS 122
Query: 172 FVDISDHEMVNS--AIVQGRTKVLYFESISNPTLAVANIPELSRL----AHDKGVTVVVD 225
F + +++N +++ TK+++ E+ +NPTL V +I +++ L A + V +VVD
Sbjct: 123 FTN----DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 226 NTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 284
NTF SP + +P GAD+VVHS +K+I+G +D++ G + + + Q A +G
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IG 235
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLEDHPHHELL 341
+P A+ + L LR+++ A A + K+ + V YPGL+ HP+++++
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295
Query: 342 KSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXX 400
G GG++ ++ E A++ + + + +A SLG E+L+
Sbjct: 296 LKQHRDALG-GGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTH 350
Query: 401 XELNAEEKALAGISAGLVRMSVGYLGTLD 429
+ E + +G+ LVR+SVG T D
Sbjct: 351 GGIPKEAREASGVFDDLVRISVGIEDTDD 379
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 176/399 (44%), Gaps = 49/399 (12%)
Query: 59 NMSIEASATFTVMEPETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
+ I + ++ PE +FA E G IYSR NPTV L +++AALEG +AA
Sbjct: 22 QVPIYPTTSYVFKSPEHAANLFALKEFG-----NIYSRIMNPTVDVLEKRLAALEGGKAA 76
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 177
TAS G +A L L +G ++V+ LYGGT R I F +
Sbjct: 77 LATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREE 132
Query: 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSP 235
A+ +T+ + ESI NP L + ++ L++ A +KGV ++VDNTF +L P
Sbjct: 133 RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRP 192
Query: 236 ARLGADVVVHSISKFISGGADIIAGAVCGPAN----------LVNSMMDLHQ-------G 278
GA +V HS++K++ G +IAGA+ N L H G
Sbjct: 193 LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG 252
Query: 279 ALMLL-----------GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGL 325
L + G + P A+ + + L LR + H L A + +
Sbjct: 253 ELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVA 312
Query: 326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVS 384
V YPGL HPHH+ + + G +L ++ E A R ++ L+ + +
Sbjct: 313 WVNYPGLPHHPHHDRAQKYFKGKP--GAVLTFGLKGGYEAAKRFISRLKLISHL----AN 366
Query: 385 LGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
+G TL +L+ EE+A AG+S +VR+SVG
Sbjct: 367 VGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 170/372 (45%), Gaps = 33/372 (8%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G VN I AS+TF +G R + Y+R NPT L +AA+E
Sbjct: 34 GAVNAPIYASSTFA-----------QDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAA 82
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
+S GM+A L + G HVV YGGT L+ F N+ T V +
Sbjct: 83 FGRAFSS---GMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVF-TGWNVEYTPVAL 138
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
+D + V +AI + T++++ E+ +NP L++A+I +++L D V+VDNTF SP +
Sbjct: 139 ADLDAVRAAI-RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ 197
Query: 235 PARLGADVVVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 293
P LGADVV+HS + +I G +D++ GA V L S L GA G P A+
Sbjct: 198 PLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGA----GAVPGPFDAY 253
Query: 294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 351
+ L LRM+ H A A + + VLYPGL HP H + A + GF
Sbjct: 254 LTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV---AARQMRGF 310
Query: 352 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALA 411
GG++ + M A + N +A SLG E+L+ +
Sbjct: 311 GGMVSVRMRAGRTAAEQLCAKTN---IFILAESLGSVESLIEHPSAMTHASTAGSQLE-- 365
Query: 412 GISAGLVRMSVG 423
+ LVR+SVG
Sbjct: 366 -VPDDLVRLSVG 376
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 189/420 (45%), Gaps = 62/420 (14%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HG V + I A A + E + FA G ++Y+R +PT L ++ ALEG
Sbjct: 17 HGAVGLPIYAVAAYGFKTLEEGQERFATGEG-----YVYARQKDPTAKALEERLKALEGA 71
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
A AS G +A + L+ L G VVAA+ L+G T L +T +VD
Sbjct: 72 LEAVVLAS---GQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVL-SLMGVTVRYVD 127
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLV 232
+ E V A+ +T+ ++ E+++NP L V ++ L+ LA + GV +VVDNTF + +
Sbjct: 128 -PEPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL 185
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
P GA VVV S++ + SG ++ GAV ++ +L + L P + ++
Sbjct: 186 CRPLAWGAHVVVESLTXWASGHGSVLGGAV------LSRETELWRNYPQFLQPDLKGQIP 239
Query: 293 FE------LSERIPHLG------------------------LRMKEHCHRALIFARRMK- 321
+E ER+ LG LR+ A A R++
Sbjct: 240 WEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQG 299
Query: 322 KLGLKVL-YPGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFG 379
+K L YPGL + P H A K GG +L LD+ E+A+R + ++
Sbjct: 300 HPKVKALRYPGLPEDPAHR----NARKYLASGGPILTLDLGDLERASRFLGAIRL----- 350
Query: 380 FMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
A +LG TL+ L E + AG++ GLVR+SVG LD + FE+AL
Sbjct: 351 LKAANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDL-LALFEEAL 409
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 190/395 (48%), Gaps = 48/395 (12%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGE-LGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HG + + +A F + + ++ G LG +YSR NPTV +L +++ L G
Sbjct: 42 HGALRTPVYDNAAFEFENSDEIAQVSLGRALG-----HVYSRSSNPTVEDLEQRLKNLTG 96
Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
S GM+AIS+ ++ L +G VV L+G T +L P + I FV
Sbjct: 97 ALGVLALGS---GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRFV 152
Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV 232
D+ D V A + TK+L+ E+ISNP L VA++ LS++ H KG+ +VVD T + P +
Sbjct: 153 DVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL 211
Query: 233 LSPARLGADVVVHSISKFISGGADIIAG--------------------AVCGP-ANLVNS 271
L RLG D+ V S +KFISGG + G A GP A L +
Sbjct: 212 LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKA 271
Query: 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK--VLY 329
++ Q LGP+++P A+ S + + LR++ C A A + + V +
Sbjct: 272 RKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNH 327
Query: 330 PGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 388
P L D P + ++A +++ + G +L ++E++E + R M+ L+ + A ++
Sbjct: 328 PSLPDSPFY----AIAKRQFRYAGSILTFELESKEASYRFMDALKLIRR----ATNIHDN 379
Query: 389 ETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
++L+ + EE+ IS ++R+SVG
Sbjct: 380 KSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG 414
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 42/401 (10%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 22 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
EG A C G +A+++ ++ G HV+ T Y + + + +TT+
Sbjct: 75 EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 130
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
+ D ++ + IV Q TK+++ ES + T+ V ++P + +++DN
Sbjct: 131 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 186
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
T++ VL A G DV + + +K++ G +D + G AVC L + A L+G
Sbjct: 187 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 241
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
++ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 242 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 301
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+
Sbjct: 302 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 356
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
+ + + S L+R+ +G L +D + + +R+
Sbjct: 357 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 42/401 (10%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 42 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 94
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
EG A C G +A+++ ++ G HV+ T Y + + + +TT+
Sbjct: 95 EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 150
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
+ D ++ + IV Q TK+++ ES + T+ V ++P + +++DN
Sbjct: 151 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
T++ VL A G DV + + +K++ G +D + G AVC L + A L+G
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 261
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
++ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+
Sbjct: 322 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 376
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
+ + + S L+R+ +G L +D + + +R+
Sbjct: 377 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 414
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 22 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
EG A C G +A+++ ++ G HV+ T Y + + + +TT+
Sbjct: 75 EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 130
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
+ D ++ + IV Q TK+++ ES + T+ V ++P + +++DN
Sbjct: 131 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 186
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
T++ VL A G DV + + + ++ G +D + G AVC L + A L+G
Sbjct: 187 TWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 241
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
++ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 242 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 301
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+
Sbjct: 302 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 356
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
+ + + S L+R+ +G L +D + + +R+
Sbjct: 357 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 198 ISNPTLAVANIPELSRLAH---DKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS 252
I+ P N+P++ ++A + V ++V+ ++ + +S +GAD +V S K ++
Sbjct: 153 ITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212
Query: 253 GGADI-IAGAVCGPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPHLGLRMK--- 307
I + G A +V + ++ + LLG T L PH+ R+K
Sbjct: 213 ASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWD 272
Query: 308 EHCHRALIFARRMKKLGLKVLYPGLEDHPH-HELL 341
E +A FA M+KLG+K L D+PH H+L+
Sbjct: 273 EEVEKARRFAAEMEKLGIK----QLGDNPHNHDLM 303
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 277
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 277
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 277
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDL 275
+ SP R+ + H+++ ++G A A G CGP ++ +M +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASV 259
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDL 275
+ SP R+ + H+++ ++G A A G CGP ++ +M +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASV 259
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 231
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 232 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSM 272
+ SP R+ + H+++ ++G A A G CGP ++ +M
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAXAFAMTGWRIGYACGPKEVIKAM 256
>pdb|3FD0|A Chain A, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
pdb|3FD0|B Chain B, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
Length = 409
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 39/208 (18%)
Query: 96 HFNPTV---------LNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGH--- 143
HFNP+ L R A++ TEAA +G AIS+VL + G
Sbjct: 47 HFNPSTGYGYDDEGRDTLERVYASVFKTEAALVRPQIISGTHAISTVLFGILRPGDELLY 106
Query: 144 -----------VVAARTLYGGTHALLTHF------FPRACNITTTFVDISDHEMVNSAIV 186
+V R+ G+ L F P N + +S N+ +
Sbjct: 107 ITGEPYDTLEEIVGIRSEGQGS---LKDFQIGYDAVPLLPNGEIDYPAVSKKISANTKXI 163
Query: 187 QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADV 242
+ Y + P+ + I E + + V VDN + V + P +GAD+
Sbjct: 164 GIQRSRGYAD---RPSFTIEKIKEXVTFVKNINPNIIVFVDNCYGEFVERIEPTEVGADI 220
Query: 243 VVHSISKFISGGADIIAGAVCGPANLVN 270
+ S+ GG G + G LV+
Sbjct: 221 IAGSLIXNPGGGLAKTGGYIAGRNTLVD 248
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 324 GLKVLYPGLEDHPHHELLKSMANKEYG---FGGLL 355
++VL+PG+EDHP + ++ AN E FG LL
Sbjct: 58 AMRVLFPGIEDHPVLKEMEVQANVEKSLTLFGQLL 92
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 188 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 229
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|3VA1|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA1|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA4|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
pdb|3VA4|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
Length = 132
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 71 MEPETMRRMFAGELGPDRDFFIY 93
MEP R+F+G GP+RDF +Y
Sbjct: 21 MEPIGQLRLFSGTHGPERDFPLY 43
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 188 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 229
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 188 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 229
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 188 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 229
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 16/124 (12%)
Query: 186 VQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLVLSPAR----L 238
V RT+ L S NPT AV + EL + +A + V+ D + LV AR
Sbjct: 157 VTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLA 216
Query: 239 GAD-------VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
G D + + F G I G CGPA L+ + Q + G P V
Sbjct: 217 GFDGMAERTITISSAAXMFNCTGWKI--GWACGPAELIAGVRAAKQYLSYVGGAPFQPAV 274
Query: 292 AFEL 295
A L
Sbjct: 275 ALAL 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,057,493
Number of Sequences: 62578
Number of extensions: 444681
Number of successful extensions: 1276
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 51
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)