Query 013079
Match_columns 450
No_of_seqs 427 out of 3493
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndn_A O-succinylhomoserine su 100.0 2.3E-55 7.9E-60 443.7 43.1 382 37-439 23-413 (414)
2 3ri6_A O-acetylhomoserine sulf 100.0 9.4E-56 3.2E-60 447.8 34.8 380 40-440 26-430 (430)
3 1qgn_A Protein (cystathionine 100.0 8.7E-54 3E-58 434.8 45.5 386 36-442 51-445 (445)
4 2fq6_A Cystathionine beta-lyas 100.0 4.6E-54 1.6E-58 433.9 37.1 379 40-442 25-414 (415)
5 3nmy_A Xometc, cystathionine g 100.0 2.4E-53 8E-58 427.1 39.5 372 39-440 18-397 (400)
6 3qhx_A Cystathionine gamma-syn 100.0 6.9E-52 2.4E-56 416.0 43.3 370 39-439 16-391 (392)
7 3acz_A Methionine gamma-lyase; 100.0 3.7E-50 1.3E-54 403.0 43.3 380 40-441 5-388 (389)
8 1n8p_A Cystathionine gamma-lya 100.0 1.2E-49 4.1E-54 399.7 39.0 376 37-443 4-392 (393)
9 3cog_A Cystathionine gamma-lya 100.0 1.8E-48 6.1E-53 392.4 43.6 378 37-444 15-400 (403)
10 1gc0_A Methionine gamma-lyase; 100.0 3.8E-48 1.3E-52 389.5 39.8 382 40-442 9-397 (398)
11 2ctz_A O-acetyl-L-homoserine s 100.0 1.6E-47 5.3E-52 387.9 41.1 384 40-439 2-420 (421)
12 2cb1_A O-acetyl homoserine sul 100.0 5.8E-46 2E-50 375.4 45.6 378 40-441 2-411 (412)
13 1e5e_A MGL, methionine gamma-l 100.0 7E-46 2.4E-50 373.7 44.3 385 39-444 6-397 (404)
14 2rfv_A Methionine gamma-lyase; 100.0 3E-44 1E-48 361.1 42.9 383 39-442 7-396 (398)
15 1cs1_A CGS, protein (cystathio 100.0 5.2E-42 1.8E-46 343.3 42.9 374 39-443 3-384 (386)
16 1ibj_A CBL, cystathionine beta 100.0 1.6E-41 5.4E-46 347.0 39.6 373 39-442 85-462 (464)
17 1pff_A Methionine gamma-lyase; 100.0 4.4E-37 1.5E-41 300.7 31.5 323 103-442 2-330 (331)
18 3i16_A Aluminum resistance pro 100.0 1.3E-32 4.5E-37 277.2 28.8 331 85-442 62-425 (427)
19 3jzl_A Putative cystathionine 100.0 1.2E-32 4.1E-37 276.5 28.0 330 86-442 49-408 (409)
20 3hvy_A Cystathionine beta-lyas 100.0 5.9E-32 2E-36 272.4 27.3 331 84-442 63-425 (427)
21 4hvk_A Probable cysteine desul 100.0 1.2E-31 4E-36 266.2 19.2 335 65-441 8-368 (382)
22 3ly1_A Putative histidinol-pho 100.0 2.4E-30 8.1E-35 255.0 28.4 279 97-442 49-348 (354)
23 3a2b_A Serine palmitoyltransfe 100.0 3.2E-29 1.1E-33 251.1 35.7 312 74-444 64-390 (398)
24 3ffh_A Histidinol-phosphate am 100.0 1E-29 3.4E-34 251.5 29.8 279 97-441 65-361 (363)
25 3get_A Histidinol-phosphate am 100.0 3.2E-30 1.1E-34 255.3 25.3 274 102-441 68-362 (365)
26 1eg5_A Aminotransferase; PLP-d 100.0 2.5E-30 8.7E-35 257.1 24.4 331 73-442 18-372 (384)
27 3cai_A Possible aminotransfera 100.0 1.2E-30 4E-35 262.1 22.1 322 73-442 43-405 (406)
28 3lvm_A Cysteine desulfurase; s 100.0 2E-30 6.8E-35 261.8 22.7 327 74-441 40-394 (423)
29 1b5p_A Protein (aspartate amin 100.0 1.7E-29 5.8E-34 252.3 29.0 266 101-423 70-365 (385)
30 3dzz_A Putative pyridoxal 5'-p 100.0 1.6E-29 5.4E-34 252.2 28.6 294 91-440 58-383 (391)
31 4eb5_A Probable cysteine desul 100.0 3.8E-30 1.3E-34 255.7 23.6 338 67-444 10-375 (382)
32 1kmj_A Selenocysteine lyase; p 100.0 5.1E-30 1.7E-34 256.8 24.3 324 73-443 40-402 (406)
33 1t3i_A Probable cysteine desul 100.0 5.5E-30 1.9E-34 257.9 24.2 326 74-442 46-409 (420)
34 3hdo_A Histidinol-phosphate am 100.0 2.4E-29 8E-34 248.8 27.4 284 97-444 63-353 (360)
35 3tqx_A 2-amino-3-ketobutyrate 100.0 1.2E-28 4.3E-33 246.4 32.9 311 74-444 64-394 (399)
36 1fg7_A Histidinol phosphate am 100.0 7.1E-29 2.4E-33 245.3 30.2 278 97-442 56-354 (356)
37 3op7_A Aminotransferase class 100.0 3.6E-29 1.2E-33 248.6 28.1 286 98-441 62-370 (375)
38 1bs0_A Protein (8-amino-7-oxon 100.0 1.9E-28 6.4E-33 244.3 33.2 310 74-442 60-383 (384)
39 1fc4_A 2-amino-3-ketobutyrate 100.0 1.1E-28 3.7E-33 247.5 31.5 312 74-444 66-395 (401)
40 3ele_A Amino transferase; RER0 100.0 2.5E-29 8.6E-34 251.8 26.5 280 101-442 78-396 (398)
41 3vax_A Putative uncharacterize 100.0 6.3E-31 2.1E-35 263.4 14.5 329 73-443 37-397 (400)
42 3euc_A Histidinol-phosphate am 100.0 2.6E-29 8.9E-34 248.9 25.4 280 97-442 65-364 (367)
43 3nra_A Aspartate aminotransfer 100.0 6.1E-29 2.1E-33 249.5 28.3 288 96-440 79-399 (407)
44 2dr1_A PH1308 protein, 386AA l 100.0 1.5E-28 5.1E-33 244.6 30.8 295 93-441 47-374 (386)
45 3fvs_A Kynurenine--oxoglutarat 100.0 3E-29 1E-33 253.1 25.7 310 74-441 48-417 (422)
46 2w8t_A SPT, serine palmitoyltr 100.0 2.4E-28 8.1E-33 247.5 32.0 290 97-442 107-411 (427)
47 3p1t_A Putative histidinol-pho 100.0 3.8E-28 1.3E-32 237.4 32.3 276 96-443 48-334 (337)
48 3dyd_A Tyrosine aminotransfera 100.0 9.6E-29 3.3E-33 250.4 28.5 285 99-442 96-424 (427)
49 4dq6_A Putative pyridoxal phos 100.0 7.2E-29 2.5E-33 247.5 27.1 305 74-441 52-388 (391)
50 1o4s_A Aspartate aminotransfer 100.0 2.7E-28 9.1E-33 243.9 31.1 278 100-441 79-384 (389)
51 3e2y_A Kynurenine-oxoglutarate 100.0 8.4E-29 2.9E-33 248.8 27.4 288 101-441 63-408 (410)
52 3h14_A Aminotransferase, class 100.0 1.4E-28 4.6E-33 246.0 28.7 284 101-442 70-378 (391)
53 1j32_A Aspartate aminotransfer 100.0 1.3E-28 4.5E-33 245.7 28.5 216 101-327 69-315 (388)
54 2z61_A Probable aspartate amin 100.0 4.9E-28 1.7E-32 240.1 32.2 280 100-441 67-366 (370)
55 3aow_A Putative uncharacterize 100.0 2.2E-28 7.4E-33 249.4 30.2 288 100-442 119-445 (448)
56 2x5d_A Probable aminotransfera 100.0 4.2E-28 1.4E-32 244.3 32.0 272 99-425 75-379 (412)
57 3kax_A Aminotransferase, class 100.0 3.2E-28 1.1E-32 242.1 30.5 305 74-441 44-380 (383)
58 2dou_A Probable N-succinyldiam 100.0 8.3E-29 2.8E-33 246.2 25.5 284 99-441 63-373 (376)
59 1v2d_A Glutamine aminotransfer 100.0 3.9E-28 1.4E-32 241.7 30.4 282 100-441 62-366 (381)
60 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 4.6E-29 1.6E-33 247.1 22.4 294 91-443 45-367 (371)
61 1u08_A Hypothetical aminotrans 100.0 2.5E-28 8.7E-33 243.6 27.9 285 101-440 69-384 (386)
62 3jtx_A Aminotransferase; NP_28 100.0 5.6E-28 1.9E-32 241.7 30.0 289 100-441 71-393 (396)
63 1vjo_A Alanine--glyoxylate ami 100.0 1.6E-28 5.4E-33 245.4 25.9 296 93-442 61-391 (393)
64 1gd9_A Aspartate aminotransfer 100.0 2.9E-28 1E-32 243.2 27.7 283 101-441 65-381 (389)
65 1c7n_A Cystalysin; transferase 100.0 5.7E-28 2E-32 242.0 29.6 288 101-442 68-393 (399)
66 3g0t_A Putative aminotransfera 100.0 9.7E-29 3.3E-33 250.6 23.8 292 101-442 84-433 (437)
67 1yiz_A Kynurenine aminotransfe 100.0 9E-28 3.1E-32 243.1 30.1 312 74-442 57-425 (429)
68 3zrp_A Serine-pyruvate aminotr 100.0 2.9E-28 1E-32 242.1 25.9 290 98-442 34-359 (384)
69 3l8a_A METC, putative aminotra 100.0 3.1E-28 1.1E-32 246.1 26.2 296 91-441 92-417 (421)
70 3ftb_A Histidinol-phosphate am 100.0 6.2E-28 2.1E-32 238.2 27.6 278 97-442 59-357 (361)
71 3ezs_A Aminotransferase ASPB; 100.0 5.7E-28 2E-32 239.9 27.5 280 101-442 61-371 (376)
72 3b46_A Aminotransferase BNA3; 100.0 5.6E-28 1.9E-32 246.2 27.9 289 101-441 97-442 (447)
73 3kki_A CAI-1 autoinducer synth 100.0 1.6E-27 5.6E-32 239.7 30.7 315 74-447 80-405 (409)
74 2o0r_A RV0858C (N-succinyldiam 100.0 7.9E-28 2.7E-32 242.2 28.4 297 101-443 64-393 (411)
75 1vp4_A Aminotransferase, putat 100.0 4.1E-28 1.4E-32 245.5 26.4 292 100-445 86-421 (425)
76 1lc5_A COBD, L-threonine-O-3-p 100.0 5.4E-28 1.9E-32 239.3 26.4 278 99-442 59-356 (364)
77 3if2_A Aminotransferase; YP_26 100.0 1.8E-28 6.3E-33 249.3 23.5 324 74-442 50-440 (444)
78 1xi9_A Putative transaminase; 100.0 1.3E-27 4.3E-32 240.3 29.1 284 101-441 80-402 (406)
79 2zc0_A Alanine glyoxylate tran 100.0 1E-27 3.5E-32 240.8 28.4 289 100-442 76-404 (407)
80 2o1b_A Aminotransferase, class 100.0 3.1E-28 1.1E-32 244.8 24.6 286 100-442 86-399 (404)
81 3f9t_A TDC, L-tyrosine decarbo 100.0 5.7E-28 1.9E-32 240.8 25.2 307 66-442 39-394 (397)
82 1iay_A ACC synthase 2, 1-amino 100.0 1.7E-27 5.8E-32 241.0 28.9 293 95-443 78-424 (428)
83 2r2n_A Kynurenine/alpha-aminoa 100.0 2.2E-27 7.6E-32 240.2 29.5 288 99-440 82-418 (425)
84 2zyj_A Alpha-aminodipate amino 100.0 9.4E-28 3.2E-32 240.4 26.3 290 99-442 74-393 (397)
85 3cq5_A Histidinol-phosphate am 100.0 1.1E-27 3.8E-32 237.6 25.9 273 102-443 72-365 (369)
86 3fkd_A L-threonine-O-3-phospha 100.0 1.4E-27 4.8E-32 235.0 26.3 279 99-444 50-340 (350)
87 3fdb_A Beta C-S lyase, putativ 100.0 1.1E-27 3.6E-32 237.9 25.5 283 102-441 61-371 (377)
88 1d2f_A MALY protein; aminotran 100.0 4.6E-27 1.6E-31 234.7 30.2 269 104-426 69-371 (390)
89 3ppl_A Aspartate aminotransfer 100.0 1.9E-27 6.4E-32 240.7 27.4 297 91-442 72-420 (427)
90 1bw0_A TAT, protein (tyrosine 100.0 1.4E-27 4.9E-32 240.5 26.4 285 100-441 76-412 (416)
91 1elu_A L-cysteine/L-cystine C- 100.0 7.1E-28 2.4E-32 240.0 23.5 288 99-442 59-388 (390)
92 2bwn_A 5-aminolevulinate synth 100.0 2.2E-26 7.6E-31 230.7 34.3 310 74-443 67-397 (401)
93 3piu_A 1-aminocyclopropane-1-c 100.0 2.1E-27 7.3E-32 240.9 27.1 288 100-442 87-432 (435)
94 1iug_A Putative aspartate amin 100.0 1.2E-27 3.9E-32 235.2 23.2 286 98-442 33-344 (352)
95 2gb3_A Aspartate aminotransfer 100.0 4.7E-27 1.6E-31 236.4 28.0 292 100-443 80-403 (409)
96 2z9v_A Aspartate aminotransfer 100.0 4.2E-27 1.4E-31 234.9 26.6 293 98-442 41-367 (392)
97 3t18_A Aminotransferase class 100.0 6.2E-27 2.1E-31 235.7 28.0 279 101-444 81-412 (413)
98 3nnk_A Ureidoglycine-glyoxylat 100.0 2.9E-27 1E-31 237.4 25.5 290 99-442 46-386 (411)
99 3ihj_A Alanine aminotransferas 100.0 9.8E-27 3.4E-31 240.1 29.4 322 68-445 102-496 (498)
100 2ch1_A 3-hydroxykynurenine tra 100.0 4.6E-27 1.6E-31 234.9 25.8 293 98-443 50-384 (396)
101 2x5f_A Aspartate_tyrosine_phen 100.0 2.4E-27 8.1E-32 240.1 23.8 281 100-441 89-428 (430)
102 3isl_A Purine catabolism prote 100.0 7.9E-27 2.7E-31 234.6 27.2 292 98-442 43-390 (416)
103 3g7q_A Valine-pyruvate aminotr 100.0 6.7E-27 2.3E-31 235.5 25.9 298 98-442 74-413 (417)
104 1jg8_A L-ALLO-threonine aldola 100.0 9.1E-27 3.1E-31 228.7 25.9 281 97-442 36-342 (347)
105 3qgu_A LL-diaminopimelate amin 100.0 3.2E-27 1.1E-31 240.5 22.8 308 74-442 89-436 (449)
106 3tcm_A Alanine aminotransferas 100.0 3.1E-26 1.1E-30 236.6 30.2 289 101-445 136-497 (500)
107 3ht4_A Aluminum resistance pro 100.0 8.9E-27 3.1E-31 235.6 25.1 264 86-374 55-343 (431)
108 2huf_A Alanine glyoxylate amin 100.0 2.6E-26 8.8E-31 229.2 27.8 295 97-444 50-385 (393)
109 3rq1_A Aminotransferase class 100.0 2.1E-26 7.2E-31 232.2 27.1 277 101-442 82-415 (418)
110 1m32_A 2-aminoethylphosphonate 100.0 1E-26 3.5E-31 229.3 24.3 289 99-443 37-362 (366)
111 1qz9_A Kynureninase; kynurenin 100.0 9E-27 3.1E-31 234.4 24.3 316 68-442 39-398 (416)
112 3nyt_A Aminotransferase WBPE; 100.0 3.8E-26 1.3E-30 226.5 28.0 307 97-443 33-361 (367)
113 3kgw_A Alanine-glyoxylate amin 100.0 2E-26 6.8E-31 229.6 25.8 291 98-442 55-388 (393)
114 7aat_A Aspartate aminotransfer 100.0 2.7E-26 9.2E-31 230.0 26.8 214 101-324 73-337 (401)
115 3a9z_A Selenocysteine lyase; P 99.9 5.9E-27 2E-31 237.2 21.8 335 73-442 35-424 (432)
116 3ez1_A Aminotransferase MOCR f 99.9 2.8E-26 9.5E-31 231.7 26.3 291 99-443 70-416 (423)
117 1b9h_A AHBA synthase, protein 99.9 6.2E-26 2.1E-30 226.4 28.3 323 74-443 21-385 (388)
118 3frk_A QDTB; aminotransferase, 99.9 4.9E-26 1.7E-30 226.0 26.4 307 97-443 34-365 (373)
119 3f6t_A Aspartate aminotransfer 99.9 1E-26 3.5E-31 241.8 22.4 156 102-267 141-330 (533)
120 1uu1_A Histidinol-phosphate am 99.9 7E-26 2.4E-30 221.7 26.1 262 100-441 57-333 (335)
121 2yrr_A Aminotransferase, class 99.9 3E-26 1E-30 224.8 23.2 287 99-442 33-349 (353)
122 3f0h_A Aminotransferase; RER07 99.9 9.7E-26 3.3E-30 223.7 26.8 291 98-444 51-372 (376)
123 3ruy_A Ornithine aminotransfer 99.9 3.5E-26 1.2E-30 228.6 23.5 286 95-442 74-390 (392)
124 3asa_A LL-diaminopimelate amin 99.9 3.7E-26 1.3E-30 229.2 23.1 280 74-389 53-360 (400)
125 3ju7_A Putative PLP-dependent 99.9 1.6E-25 5.5E-30 223.0 27.4 310 98-445 35-374 (377)
126 3d6k_A Putative aminotransfera 99.9 1.1E-25 3.8E-30 227.5 26.5 288 101-442 78-418 (422)
127 3uwc_A Nucleotide-sugar aminot 99.9 2.5E-25 8.5E-30 220.7 28.1 314 97-448 36-373 (374)
128 3ffr_A Phosphoserine aminotran 99.9 5.4E-26 1.8E-30 224.0 23.1 285 99-443 43-361 (362)
129 3fsl_A Aromatic-amino-acid ami 99.9 3.1E-25 1.1E-29 221.8 27.4 242 66-323 42-333 (397)
130 3e9k_A Kynureninase; kynurenin 99.9 1.8E-26 6.3E-31 236.1 18.8 292 99-445 111-460 (465)
131 4f4e_A Aromatic-amino-acid ami 99.9 2.4E-25 8E-30 224.9 26.5 241 66-323 65-355 (420)
132 3ei9_A LL-diaminopimelate amin 99.9 1E-25 3.5E-30 228.2 23.9 296 74-425 76-409 (432)
133 4adb_A Succinylornithine trans 99.9 5.6E-26 1.9E-30 227.9 21.6 303 74-440 62-394 (406)
134 3ke3_A Putative serine-pyruvat 99.9 1.2E-25 4E-30 224.1 22.4 309 83-442 20-376 (379)
135 2fnu_A Aminotransferase; prote 99.9 9.3E-25 3.2E-29 216.4 28.8 329 66-444 8-370 (375)
136 2bkw_A Alanine-glyoxylate amin 99.9 7.5E-25 2.6E-29 217.7 27.6 287 100-442 39-380 (385)
137 2c0r_A PSAT, phosphoserine ami 99.9 2.5E-26 8.7E-31 227.1 16.6 310 66-444 12-359 (362)
138 3nx3_A Acoat, acetylornithine 99.9 6.4E-25 2.2E-29 219.7 26.7 301 74-442 59-391 (395)
139 3meb_A Aspartate aminotransfer 99.9 6.9E-25 2.4E-29 223.4 27.2 252 62-324 61-372 (448)
140 1ajs_A Aspartate aminotransfer 99.9 7.4E-25 2.5E-29 220.4 25.9 222 90-324 67-345 (412)
141 1mdo_A ARNB aminotransferase; 99.9 1.2E-24 3.9E-29 217.4 26.7 310 98-445 38-385 (393)
142 2eh6_A Acoat, acetylornithine 99.9 4E-25 1.4E-29 219.3 22.8 280 97-442 68-374 (375)
143 3dr4_A Putative perosamine syn 99.9 2.9E-24 9.9E-29 214.6 29.1 309 97-442 54-389 (391)
144 1o69_A Aminotransferase; struc 99.9 6.7E-24 2.3E-28 212.4 31.8 327 70-446 11-387 (394)
145 1v72_A Aldolase; PLP-dependent 99.9 8.8E-24 3E-28 207.7 31.2 277 97-443 41-350 (356)
146 3lws_A Aromatic amino acid bet 99.9 5.3E-25 1.8E-29 217.0 22.1 293 90-443 40-353 (357)
147 3bwn_A AT1G70560, L-tryptophan 99.9 6E-25 2E-29 220.0 22.3 286 102-442 71-383 (391)
148 2q7w_A Aspartate aminotransfer 99.9 1.1E-24 3.7E-29 217.8 24.1 216 98-324 68-333 (396)
149 2c81_A Glutamine-2-deoxy-scyll 99.9 5.9E-24 2E-28 214.4 29.5 311 98-445 41-413 (418)
150 2oga_A Transaminase; PLP-depen 99.9 3.8E-24 1.3E-28 214.5 27.9 307 98-444 62-394 (399)
151 3e77_A Phosphoserine aminotran 99.9 1.3E-25 4.5E-30 222.2 16.4 322 60-445 14-374 (377)
152 3qm2_A Phosphoserine aminotran 99.9 1.3E-25 4.3E-30 223.4 16.0 320 63-445 32-384 (386)
153 2ay1_A Aroat, aromatic amino a 99.9 7.8E-25 2.7E-29 218.8 21.3 215 99-324 69-330 (394)
154 2aeu_A Hypothetical protein MJ 99.9 5.2E-25 1.8E-29 219.1 19.5 163 101-277 60-233 (374)
155 1svv_A Threonine aldolase; str 99.9 1.1E-23 3.7E-28 207.2 28.1 288 91-443 41-355 (359)
156 2pb2_A Acetylornithine/succiny 99.9 4.1E-24 1.4E-28 215.9 24.8 289 96-441 96-413 (420)
157 1yaa_A Aspartate aminotransfer 99.9 4.5E-24 1.5E-28 214.7 24.7 216 99-324 73-345 (412)
158 2ord_A Acoat, acetylornithine 99.9 4.7E-25 1.6E-29 220.8 17.4 281 97-442 80-393 (397)
159 4eu1_A Mitochondrial aspartate 99.9 6.3E-24 2.2E-28 213.5 25.6 224 89-324 71-345 (409)
160 1vef_A Acetylornithine/acetyl- 99.9 6.8E-25 2.3E-29 219.4 17.8 284 97-442 85-393 (395)
161 3mad_A Sphingosine-1-phosphate 99.9 5.7E-24 1.9E-28 220.4 23.7 284 101-446 141-473 (514)
162 1wyu_B Glycine dehydrogenase s 99.9 3.8E-24 1.3E-28 219.5 22.1 290 98-443 106-438 (474)
163 1z7d_A Ornithine aminotransfer 99.9 5.6E-24 1.9E-28 215.7 22.8 288 97-442 105-425 (433)
164 1w23_A Phosphoserine aminotran 99.9 4.6E-25 1.6E-29 217.5 14.3 303 74-443 20-357 (360)
165 2zy4_A L-aspartate beta-decarb 99.9 1.5E-23 5.2E-28 218.2 26.1 150 115-272 166-338 (546)
166 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.1E-23 3.9E-28 214.9 23.8 325 62-442 85-454 (456)
167 3b1d_A Betac-S lyase; HET: PLP 99.9 7.3E-27 2.5E-31 233.6 0.0 213 101-322 68-312 (392)
168 2oat_A Ornithine aminotransfer 99.9 7.6E-24 2.6E-28 215.2 22.1 288 97-442 116-435 (439)
169 3mc6_A Sphingosine-1-phosphate 99.9 1.1E-23 3.7E-28 217.3 23.6 285 101-446 109-441 (497)
170 2po3_A 4-dehydrase; external a 99.9 1.2E-22 4.1E-27 205.2 30.8 210 98-323 51-280 (424)
171 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 8E-23 2.7E-27 207.5 29.4 311 98-443 61-433 (437)
172 3hbx_A GAD 1, glutamate decarb 99.9 1.6E-23 5.5E-28 216.2 24.6 293 100-446 96-448 (502)
173 3pj0_A LMO0305 protein; struct 99.9 7.3E-24 2.5E-28 208.9 20.8 291 97-444 46-357 (359)
174 3ecd_A Serine hydroxymethyltra 99.9 4.7E-23 1.6E-27 207.6 27.1 317 74-442 50-393 (425)
175 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.1E-22 7.2E-27 201.1 31.1 303 97-439 32-389 (390)
176 1s0a_A Adenosylmethionine-8-am 99.9 1.7E-23 5.9E-28 211.7 22.6 308 74-443 66-421 (429)
177 2dkj_A Serine hydroxymethyltra 99.9 1.1E-23 3.9E-28 211.0 20.5 287 104-441 74-387 (407)
178 3n0l_A Serine hydroxymethyltra 99.9 3.8E-23 1.3E-27 207.9 23.8 216 103-328 75-306 (417)
179 2dgk_A GAD-beta, GADB, glutama 99.9 2.7E-23 9.3E-28 211.8 22.9 288 101-441 83-429 (452)
180 3k7y_A Aspartate aminotransfer 99.9 8.3E-23 2.8E-27 205.0 25.1 222 90-324 65-340 (405)
181 2eo5_A 419AA long hypothetical 99.9 5.6E-23 1.9E-27 207.4 23.8 281 95-442 82-414 (419)
182 1rv3_A Serine hydroxymethyltra 99.9 7.5E-24 2.6E-28 217.7 17.3 256 63-330 50-351 (483)
183 3dxv_A Alpha-amino-epsilon-cap 99.9 4.3E-23 1.5E-27 209.4 22.3 305 74-442 66-425 (439)
184 1sff_A 4-aminobutyrate aminotr 99.9 1.2E-22 4E-27 205.1 25.3 292 95-442 80-420 (426)
185 3m5u_A Phosphoserine aminotran 99.9 2.9E-23 1E-27 204.6 20.0 312 63-445 10-359 (361)
186 3gbx_A Serine hydroxymethyltra 99.9 5.5E-23 1.9E-27 206.8 22.4 271 74-373 48-341 (420)
187 2a7v_A Serine hydroxymethyltra 99.9 1E-22 3.4E-27 208.3 22.4 290 64-386 61-396 (490)
188 2fyf_A PSAT, phosphoserine ami 99.9 1.2E-22 4.1E-27 203.5 22.6 289 99-443 78-395 (398)
189 2ez2_A Beta-tyrosinase, tyrosi 99.9 6.6E-22 2.3E-26 201.6 27.9 218 97-330 73-339 (456)
190 2vi8_A Serine hydroxymethyltra 99.9 1.7E-22 5.6E-27 202.4 22.6 287 104-442 74-383 (405)
191 3i4j_A Aminotransferase, class 99.9 6.2E-22 2.1E-26 200.3 25.5 174 95-275 68-286 (430)
192 1ax4_A Tryptophanase; tryptoph 99.9 6.1E-22 2.1E-26 202.4 25.4 298 98-442 75-437 (467)
193 2hox_A ALLIIN lyase 1; cystein 99.9 1.1E-22 3.6E-27 205.9 19.1 204 101-323 102-336 (427)
194 3a8u_X Omega-amino acid--pyruv 99.9 5.3E-22 1.8E-26 202.0 24.4 291 95-442 89-443 (449)
195 3h7f_A Serine hydroxymethyltra 99.9 1.7E-22 5.9E-27 205.6 20.0 211 102-323 93-321 (447)
196 3tfu_A Adenosylmethionine-8-am 99.9 1.2E-22 4.1E-27 207.4 18.3 259 93-374 112-414 (457)
197 3gju_A Putative aminotransfera 99.9 1.4E-21 4.7E-26 199.7 26.2 176 93-274 89-314 (460)
198 1zod_A DGD, 2,2-dialkylglycine 99.9 4.6E-22 1.6E-26 201.4 22.0 292 96-442 82-428 (433)
199 3l44_A Glutamate-1-semialdehyd 99.9 2.8E-22 9.7E-27 203.1 20.5 219 96-322 92-342 (434)
200 4a6r_A Omega transaminase; tra 99.9 2.7E-21 9.2E-26 197.5 27.7 200 91-296 86-336 (459)
201 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2.1E-22 7E-27 204.9 16.5 158 96-270 54-230 (446)
202 4ffc_A 4-aminobutyrate aminotr 99.9 6.8E-21 2.3E-25 194.2 26.4 255 92-374 100-407 (453)
203 1js3_A DDC;, DOPA decarboxylas 99.9 3.7E-21 1.3E-25 197.9 24.5 243 102-374 116-429 (486)
204 3vp6_A Glutamate decarboxylase 99.9 4.8E-21 1.6E-25 198.1 25.5 294 97-444 129-503 (511)
205 3oks_A 4-aminobutyrate transam 99.9 8E-21 2.7E-25 193.6 26.6 292 93-442 98-447 (451)
206 3hmu_A Aminotransferase, class 99.9 2.9E-21 1E-25 197.8 23.0 243 93-360 93-387 (472)
207 3k28_A Glutamate-1-semialdehyd 99.9 7.4E-22 2.5E-26 199.8 18.1 218 96-323 90-340 (429)
208 2okj_A Glutamate decarboxylase 99.9 4.1E-21 1.4E-25 198.5 23.7 219 102-329 135-412 (504)
209 2oqx_A Tryptophanase; lyase, p 99.9 4.7E-21 1.6E-25 195.8 23.6 315 71-441 53-437 (467)
210 3n5m_A Adenosylmethionine-8-am 99.9 1.4E-20 4.9E-25 191.6 26.2 294 95-442 87-448 (452)
211 2epj_A Glutamate-1-semialdehyd 99.9 8.3E-22 2.8E-26 199.7 16.9 252 96-374 93-393 (434)
212 3dod_A Adenosylmethionine-8-am 99.9 5.5E-21 1.9E-25 194.6 22.5 173 95-274 83-304 (448)
213 3i5t_A Aminotransferase; pyrid 99.9 3.7E-21 1.2E-25 197.3 21.1 297 95-447 93-459 (476)
214 2jis_A Cysteine sulfinic acid 99.9 7.6E-21 2.6E-25 196.9 23.5 222 99-329 148-427 (515)
215 2qma_A Diaminobutyrate-pyruvat 99.9 9.5E-21 3.3E-25 195.4 24.0 286 102-443 143-493 (497)
216 2cy8_A D-phgat, D-phenylglycin 99.9 3.5E-21 1.2E-25 196.2 19.3 237 96-361 94-367 (453)
217 3k40_A Aromatic-L-amino-acid d 99.9 2.2E-20 7.4E-25 191.5 24.6 289 97-442 107-467 (475)
218 2cjg_A L-lysine-epsilon aminot 99.9 3.8E-21 1.3E-25 195.8 18.4 288 95-442 97-444 (449)
219 4e1o_A HDC, histidine decarbox 99.9 3.4E-20 1.2E-24 190.4 25.0 290 97-442 112-474 (481)
220 4e77_A Glutamate-1-semialdehyd 99.9 1.4E-20 4.9E-25 190.3 20.9 239 96-361 90-364 (429)
221 1c4k_A Protein (ornithine deca 99.9 6.5E-20 2.2E-24 195.5 26.7 221 97-330 171-447 (730)
222 1wyu_A Glycine dehydrogenase ( 99.9 2.2E-20 7.5E-25 189.6 22.0 282 98-442 107-436 (438)
223 3fq8_A Glutamate-1-semialdehyd 99.9 3E-21 1E-25 195.1 15.5 218 97-322 90-339 (427)
224 4h51_A Aspartate aminotransfer 99.9 2.5E-20 8.6E-25 187.3 20.1 223 91-325 81-353 (420)
225 2e7u_A Glutamate-1-semialdehyd 99.8 1.1E-20 3.8E-25 190.8 17.6 252 96-374 89-389 (424)
226 2vyc_A Biodegradative arginine 99.8 5.1E-19 1.7E-23 190.2 24.3 214 97-323 203-464 (755)
227 2yky_A Beta-transaminase; tran 99.7 6.7E-22 2.3E-26 201.1 0.0 241 96-361 137-398 (465)
228 1ohv_A 4-aminobutyrate aminotr 99.8 1E-18 3.4E-23 179.0 15.7 283 98-443 109-468 (472)
229 3n75_A LDC, lysine decarboxyla 99.7 7.6E-17 2.6E-21 170.7 18.7 213 97-323 193-442 (715)
230 4ao9_A Beta-phenylalanine amin 99.7 3E-16 1E-20 158.4 15.6 240 98-360 126-383 (454)
231 4atq_A 4-aminobutyrate transam 99.7 1E-14 3.5E-19 147.8 23.2 255 97-374 105-413 (456)
232 4e3q_A Pyruvate transaminase; 99.7 2.9E-14 1E-18 145.0 25.9 290 97-443 109-469 (473)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 4.7E-15 1.6E-19 146.7 19.4 193 116-323 136-355 (501)
234 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 2.2E-14 7.5E-19 143.6 21.0 211 100-324 99-338 (450)
235 3ou5_A Serine hydroxymethyltra 99.6 1.1E-13 3.8E-18 136.4 20.2 283 61-374 58-391 (490)
236 4a0g_A Adenosylmethionine-8-am 99.5 2.4E-13 8E-18 147.3 17.5 173 96-274 421-688 (831)
237 1tks_A 3,4-dihydroxy-2-butanon 68.4 7.9 0.00027 33.7 5.6 38 187-224 157-194 (204)
238 3mio_A DHBP synthase, 3,4-dihy 50.8 29 0.00099 30.2 6.0 38 187-224 156-194 (206)
239 2yxb_A Coenzyme B12-dependent 50.2 26 0.0009 29.1 5.6 66 151-219 31-97 (161)
240 1qyd_A Pinoresinol-lariciresin 48.9 99 0.0034 27.9 10.1 57 166-224 55-113 (313)
241 1snn_A DHBP synthase, 3,4-dihy 46.2 30 0.001 30.6 5.5 37 187-224 176-212 (227)
242 1g57_A DHBP synthase, 3,4-dihy 45.4 40 0.0014 29.6 6.1 37 187-224 165-201 (217)
243 1y80_A Predicted cobalamin bin 42.3 50 0.0017 28.5 6.5 72 151-225 101-177 (210)
244 3ic5_A Putative saccharopine d 42.3 1E+02 0.0035 22.8 9.7 90 116-223 7-97 (118)
245 3sho_A Transcriptional regulat 42.2 62 0.0021 27.0 7.0 33 187-223 86-118 (187)
246 3ezx_A MMCP 1, monomethylamine 41.7 1.1E+02 0.0036 26.7 8.5 75 142-219 93-173 (215)
247 2ioj_A Hypothetical protein AF 40.6 1.3E+02 0.0046 23.7 8.6 48 170-224 55-103 (139)
248 3ecs_A Translation initiation 40.2 1.6E+02 0.0056 27.3 9.9 101 114-225 121-229 (315)
249 1xrs_B D-lysine 5,6-aminomutas 39.8 1.6E+02 0.0055 26.5 9.5 100 126-226 105-222 (262)
250 1vb5_A Translation initiation 39.2 85 0.0029 28.5 7.7 111 104-225 99-217 (276)
251 3dm5_A SRP54, signal recogniti 39.2 1.6E+02 0.0055 28.8 10.1 127 100-228 75-224 (443)
252 4gqr_A Pancreatic alpha-amylas 38.1 15 0.0005 36.3 2.5 87 139-229 7-100 (496)
253 3trj_A Phosphoheptose isomeras 37.5 1.9E+02 0.0065 24.5 10.7 40 180-224 107-146 (201)
254 1t9k_A Probable methylthioribo 36.1 2.1E+02 0.0072 26.9 10.1 87 134-225 173-267 (347)
255 2zcu_A Uncharacterized oxidore 34.4 1.3E+02 0.0046 26.5 8.4 52 167-220 45-96 (286)
256 3gi1_A LBP, laminin-binding pr 34.2 1.8E+02 0.0061 26.4 9.2 70 140-224 178-256 (286)
257 2xhz_A KDSD, YRBH, arabinose 5 32.9 1.8E+02 0.0063 23.8 8.5 36 187-226 95-132 (183)
258 1g94_A Alpha-amylase; beta-alp 32.7 18 0.00061 35.6 2.1 31 198-228 57-87 (448)
259 3dr5_A Putative O-methyltransf 32.7 2.4E+02 0.0081 24.2 12.1 122 98-228 38-165 (221)
260 3v7e_A Ribosome-associated pro 32.7 57 0.0019 23.6 4.4 46 178-227 16-61 (82)
261 1ccw_A Protein (glutamate muta 31.9 45 0.0015 26.7 4.1 66 151-219 16-82 (137)
262 1k4i_A 3,4-dihydroxy-2-butanon 31.0 67 0.0023 28.4 5.2 37 187-224 165-212 (233)
263 2r6j_A Eugenol synthase 1; phe 31.0 1E+02 0.0035 28.0 7.0 54 166-224 58-112 (318)
264 3bzy_B ESCU; auto cleavage pro 30.8 28 0.00096 25.5 2.4 20 208-227 29-48 (83)
265 3mwd_B ATP-citrate synthase; A 30.5 87 0.003 29.4 6.4 76 148-228 64-140 (334)
266 2i2x_B MTAC, methyltransferase 29.8 1.6E+02 0.0053 26.3 7.8 80 142-224 124-209 (258)
267 3bh4_A Alpha-amylase; calcium, 29.4 27 0.00093 34.6 2.8 33 198-230 71-103 (483)
268 1mxg_A Alpha amylase; hyperthe 28.9 32 0.0011 33.7 3.2 33 199-231 80-112 (435)
269 1ud2_A Amylase, alpha-amylase; 28.6 29 0.00098 34.4 2.8 33 198-230 73-105 (480)
270 3umo_A 6-phosphofructokinase i 28.5 2E+02 0.0068 26.0 8.6 19 208-226 149-167 (309)
271 1wpc_A Glucan 1,4-alpha-maltoh 28.4 29 0.001 34.4 2.8 33 198-230 75-107 (485)
272 1hvx_A Alpha-amylase; hydrolas 28.0 30 0.001 34.7 2.8 33 198-230 74-106 (515)
273 1qyc_A Phenylcoumaran benzylic 27.9 1.7E+02 0.006 26.1 8.1 54 166-224 56-110 (308)
274 3kts_A Glycerol uptake operon 27.9 83 0.0028 27.0 5.2 81 176-274 17-99 (192)
275 1pq4_A Periplasmic binding pro 27.4 2.8E+02 0.0097 25.1 9.3 70 140-224 189-265 (291)
276 3i6i_A Putative leucoanthocyan 27.4 2.9E+02 0.0099 25.2 9.7 59 166-228 60-120 (346)
277 1gcy_A Glucan 1,4-alpha-maltot 27.4 34 0.0012 34.4 3.1 31 200-230 87-117 (527)
278 1wza_A Alpha-amylase A; hydrol 27.2 33 0.0011 34.0 3.0 30 200-229 76-105 (488)
279 2xij_A Methylmalonyl-COA mutas 26.4 3.4E+02 0.012 28.5 10.4 76 142-220 605-684 (762)
280 2jl1_A Triphenylmethane reduct 26.4 2.1E+02 0.0072 25.2 8.3 52 167-220 46-99 (287)
281 2dh2_A 4F2 cell-surface antige 26.4 36 0.0012 33.2 3.0 34 198-231 74-107 (424)
282 1lwj_A 4-alpha-glucanotransfer 26.3 31 0.0011 33.7 2.6 31 199-229 63-93 (441)
283 4h1h_A LMO1638 protein; MCCF-l 26.3 1.2E+02 0.0042 28.2 6.6 67 138-205 9-94 (327)
284 3c1o_A Eugenol synthase; pheny 26.1 1.8E+02 0.0061 26.3 7.8 54 166-224 56-110 (321)
285 2o1e_A YCDH; alpha-beta protei 26.1 1E+02 0.0036 28.4 6.1 69 140-223 189-266 (312)
286 1iv0_A Hypothetical protein; r 26.1 1.2E+02 0.0039 22.8 5.2 52 177-228 39-95 (98)
287 2e8y_A AMYX protein, pullulana 26.0 25 0.00084 37.1 1.9 29 203-231 313-341 (718)
288 2ya0_A Putative alkaline amylo 25.9 31 0.0011 36.2 2.6 33 199-231 248-280 (714)
289 3a11_A Translation initiation 25.3 1.6E+02 0.0054 27.7 7.1 100 115-225 142-249 (338)
290 2vt1_B Surface presentation of 25.3 40 0.0014 25.3 2.4 20 208-227 29-48 (93)
291 4a18_G RPL30; ribosome, eukary 24.8 87 0.003 23.7 4.4 43 178-224 27-69 (104)
292 2guy_A Alpha-amylase A; (beta- 24.7 35 0.0012 33.7 2.6 32 199-230 91-122 (478)
293 3dhu_A Alpha-amylase; structur 24.5 33 0.0011 33.6 2.4 28 201-228 79-106 (449)
294 1ht6_A AMY1, alpha-amylase iso 24.5 37 0.0012 32.8 2.7 31 201-231 64-94 (405)
295 4aie_A Glucan 1,6-alpha-glucos 24.5 31 0.0011 34.5 2.3 30 200-229 74-103 (549)
296 1jae_A Alpha-amylase; glycosid 24.4 26 0.00089 34.7 1.6 86 141-230 9-99 (471)
297 3ruf_A WBGU; rossmann fold, UD 24.3 2.8E+02 0.0096 25.2 8.9 102 114-220 25-143 (351)
298 2yva_A DNAA initiator-associat 24.2 3E+02 0.01 22.7 9.3 36 183-223 105-140 (196)
299 3t7y_A YOP proteins translocat 23.9 39 0.0013 25.5 2.1 20 208-227 44-63 (97)
300 3ikh_A Carbohydrate kinase; tr 23.7 3.9E+02 0.013 23.8 11.5 37 188-228 130-166 (299)
301 1ea9_C Cyclomaltodextrinase; h 23.5 47 0.0016 33.9 3.3 32 200-231 213-244 (583)
302 2z1k_A (NEO)pullulanase; hydro 23.4 37 0.0013 33.5 2.5 31 200-230 91-121 (475)
303 3c01_E Surface presentation of 23.2 41 0.0014 25.5 2.1 19 208-226 29-47 (98)
304 3tla_A MCCF; serine protease, 23.1 1.6E+02 0.0053 28.1 6.7 61 138-199 40-119 (371)
305 2wc7_A Alpha amylase, catalyti 22.6 36 0.0012 33.8 2.2 32 199-230 96-127 (488)
306 1ua7_A Alpha-amylase; beta-alp 22.2 36 0.0012 33.1 2.1 30 202-231 71-100 (422)
307 3io5_A Recombination and repai 22.1 4.8E+02 0.016 24.3 10.1 96 127-224 43-167 (333)
308 3ghf_A Septum site-determining 21.8 2.8E+02 0.0097 21.4 7.4 54 166-223 15-78 (120)
309 2aaa_A Alpha-amylase; glycosid 21.6 41 0.0014 33.3 2.4 31 199-229 91-121 (484)
310 1j0h_A Neopullulanase; beta-al 21.5 44 0.0015 34.1 2.7 32 200-231 217-248 (588)
311 3on1_A BH2414 protein; structu 21.4 1.2E+02 0.0042 22.6 4.6 43 178-224 23-65 (101)
312 1req_A Methylmalonyl-COA mutas 21.1 3.2E+02 0.011 28.6 8.9 81 142-225 597-684 (727)
313 1m53_A Isomaltulose synthase; 21.1 43 0.0015 34.0 2.5 31 200-230 87-117 (570)
314 3mfq_A TROA, high-affinity zin 21.0 77 0.0026 28.9 4.0 44 177-224 200-243 (282)
315 1zja_A Trehalulose synthase; s 21.0 45 0.0015 33.7 2.6 32 199-230 73-104 (557)
316 1vhx_A Putative holliday junct 20.9 1.7E+02 0.0057 23.8 5.6 53 177-229 43-101 (150)
317 2ya1_A Putative alkaline amylo 20.5 45 0.0015 36.6 2.6 31 201-231 557-587 (1014)
318 1wzl_A Alpha-amylase II; pullu 20.4 45 0.0016 34.0 2.5 32 200-231 214-245 (585)
319 3qtp_A Enolase 1; glycolysis, 20.4 3.4E+02 0.012 26.4 8.5 96 126-225 281-379 (441)
320 3bc9_A AMYB, alpha amylase, ca 20.4 47 0.0016 34.1 2.6 32 199-230 202-233 (599)
321 3v7q_A Probable ribosomal prot 20.1 1.5E+02 0.0052 22.1 4.9 44 178-225 24-67 (101)
No 1
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-55 Score=443.68 Aligned_cols=382 Identities=29% Similarity=0.446 Sum_probs=338.4
Q ss_pred CCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (450)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~ 116 (450)
..+++.|+++|+....+.+|++.|||+.++||.+++.+.+.+.+... .+.|.|+|+.+|..+++++++|+++|.+.
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~l~~~la~~~g~~~ 98 (414)
T 3ndn_A 23 DGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEGAPA 98 (414)
T ss_dssp TTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTS----SCCCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCC----cCCcCcCCCCChHHHHHHHHHHHHHCCCc
Confidence 34578888888544446789999999999999999988877776443 56799999999999999999999999999
Q ss_pred EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079 117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 196 (450)
Q Consensus 117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~ 196 (450)
+++++| |++|+.+++++++++||+|+++.+.|+++...+...+.+ .|+++.+++.+|+++|++++ +++|++|+++
T Consensus 99 ~~~~~s---G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le 173 (414)
T 3ndn_A 99 AFATAS---GMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFE 173 (414)
T ss_dssp EEEESS---HHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEE
T ss_pred EEEECC---HHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEE
Confidence 999999 999999999999999999999999999998877544443 79999999999999999999 8899999999
Q ss_pred cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHH
Q 013079 197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMD 274 (450)
Q Consensus 197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~ 274 (450)
+|+||+|.+.|+++|+++|+++|+++|+|++| .+....+...|+|+++.|+||+++++|..++|+++++++.+. .+..
T Consensus 174 ~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~ 253 (414)
T 3ndn_A 174 TPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK 253 (414)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH
T ss_pred CCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH
Confidence 99999999999999999999999999999999 344456777899999999999999988444599999887775 5554
Q ss_pred HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079 275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 352 (450)
Q Consensus 275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 352 (450)
... ..|..+++..++++++.++++..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |+|
T Consensus 254 ~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G 326 (414)
T 3ndn_A 254 LMR----HTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGG 326 (414)
T ss_dssp HHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCC
T ss_pred HHH----HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCc
Confidence 444 45677788888888888999999999999999999999999876 788999999999999999886 899
Q ss_pred cEEEEEeCC-----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079 353 GLLCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 427 (450)
Q Consensus 353 ~~~~~~l~~-----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 427 (450)
++++|++++ .+.+.+|++.++.. + +++|+|+.+|++++|++++|..++++++.++|+.+++||||+| .|+
T Consensus 327 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~ 401 (414)
T 3ndn_A 327 TVVTFALDCPEDVAKQRAFEVLDKMRLI---D-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LED 401 (414)
T ss_dssp SEEEEEECSCGGGHHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSC
T ss_pred eEEEEEEcCCccccHHHHHHHHHhCccc---e-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCC
Confidence 999999985 67789999999863 3 7999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 013079 428 LDQRWSQFEKAL 439 (450)
Q Consensus 428 ~~~~i~~l~~al 439 (450)
+++++++|.++|
T Consensus 402 ~~dli~dl~~al 413 (414)
T 3ndn_A 402 TDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999997
No 2
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=100.00 E-value=9.4e-56 Score=447.83 Aligned_cols=380 Identities=29% Similarity=0.457 Sum_probs=289.5
Q ss_pred ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
++.|+++|+ +.....+|+++|||++++||.+++.+.+.+.+... ...|.|+|+.+|+.++++++||+++|.+.++
T Consensus 26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v 101 (430)
T 3ri6_A 26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGR----ALGHVYSRSSNPTVEDLEQRLKNLTGALGVL 101 (430)
T ss_dssp CHHHHHHCCC------------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcc----cCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 377888874 44555689999999999999999987776665433 4579999999999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++| |++|+.+++.+++++||+|+++++.|+++...+...... .|+++++++.+|+++|++++ +++|++|++++|
T Consensus 102 ~~~s---G~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p 176 (430)
T 3ri6_A 102 ALGS---GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETI 176 (430)
T ss_dssp EESC---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESS
T ss_pred EECC---HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECC
Confidence 9999 999999999999999999999999999998866434443 79999999999999999999 889999999999
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEE--cCHHH-------
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL------- 268 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~--~~~~~------- 268 (450)
+||+|.+.|+++|+++|+++|+++|+|++| .+..+++...|+|++++|+||+++++|..+||+++ .+..+
T Consensus 177 ~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~ 256 (430)
T 3ri6_A 177 SNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLA 256 (430)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTH
T ss_pred CCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchh
Confidence 999999999999999999999999999999 55557888889999999999999999888889888 33222
Q ss_pred -----------HHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCC
Q 013079 269 -----------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 335 (450)
Q Consensus 269 -----------~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~ 335 (450)
+..++. ......|..+++..+++++++++++..|++++.++++.+.++|++++. +|.+|+++++
T Consensus 257 ~l~~~~g~~~~i~~~~~---~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~ 333 (430)
T 3ri6_A 257 PYYAKAGPMAFLYKARK---EVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDS 333 (430)
T ss_dssp HHHHHHGGGHHHHHHHH---THHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTS
T ss_pred hhhhhhchhhHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCC
Confidence 222221 112256777888999888888999999999999999999999999875 7899999999
Q ss_pred chhHHHHHHhccCCCcCc-EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC
Q 013079 336 PHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 414 (450)
Q Consensus 336 p~~~l~~~~~~~~~g~g~-~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~ 414 (450)
|+|+++++++ |+|+ +++|++++.+.+.+|++.++.. + +++|+|+.+|++++|++++|..++++++.+.|+.
T Consensus 334 p~~~~~~~~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~ 405 (430)
T 3ri6_A 334 PFYAIAKRQF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEIS 405 (430)
T ss_dssp TTHHHHHHHC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSC
T ss_pred ccHHHHHHhC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCC
Confidence 9999999987 6888 9999999878899999999874 3 7999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 415 AGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 415 ~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
+++||||+| .|++++++++|+++|+
T Consensus 406 ~~liRlsvG-~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 406 PAMMRLSVG-IEEIEDLKEDILQALC 430 (430)
T ss_dssp TTEEEEECC-SSCHHHHHHHHHHHHC
T ss_pred CCeEEEEec-cCCHHHHHHHHHHhhC
Confidence 999999999 9999999999999973
No 3
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=100.00 E-value=8.7e-54 Score=434.76 Aligned_cols=386 Identities=29% Similarity=0.493 Sum_probs=337.4
Q ss_pred CCCCCh-hHHHhhc-CCCC--CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 013079 36 AAWEDP-AAALASA-RHEF--GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111 (450)
Q Consensus 36 ~~~~~~-~~~~~~~-~~~~--~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l 111 (450)
.+++.| .|+++|+ +... ..+|++.+||+.++||.+++.+++.+.+... .+.|.|+|++++..++++++||++
T Consensus 51 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~~~~~~l~~~lA~l 126 (445)
T 1qgn_A 51 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISAL 126 (445)
T ss_dssp CTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHH
T ss_pred cccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccc----cCCccccCCCChHHHHHHHHHHHH
Confidence 455667 7888884 4333 4689999999999999999988877776543 457999999999999999999999
Q ss_pred hCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCc-
Q 013079 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT- 190 (450)
Q Consensus 112 ~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t- 190 (450)
+|++..+++++ |++|+++++++++++||+|+++.+.|+++...+...+.+ .|+++++++.+|+++|++++ +++|
T Consensus 127 ~g~~~~v~~~s---G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv 201 (445)
T 1qgn_A 127 EGAESTLLMAS---GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKV 201 (445)
T ss_dssp HTCSEEEEESC---HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCE
T ss_pred hCCCcEEEeCC---HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCC
Confidence 99988888899 999999999999999999999999999988876544554 79999999999999999999 7788
Q ss_pred eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH
Q 013079 191 KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269 (450)
Q Consensus 191 ~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~ 269 (450)
++|++++|+||+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|++++|+||+++++|+.++|+++++++++
T Consensus 202 ~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~ 281 (445)
T 1qgn_A 202 NLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLV 281 (445)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHH
T ss_pred CEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHH
Confidence 99999999999999999999999999999999999999 45556777789999999999999988764459999999988
Q ss_pred HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhcc
Q 013079 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANK 347 (450)
Q Consensus 270 ~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~ 347 (450)
+.+...+. ..|..+++..++.+.++++++..+++++.++++++.++|++++. ++.+|+++++|+|++++++++
T Consensus 282 ~~l~~~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~- 356 (445)
T 1qgn_A 282 SEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT- 356 (445)
T ss_dssp HHHHHHHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS-
T ss_pred HHHHHHHH----HhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc-
Confidence 88866544 45666777777777778899999999998999999999999875 688999999999999999876
Q ss_pred CCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079 348 EYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 426 (450)
Q Consensus 348 ~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 426 (450)
|.|++++|.+++ .+.+..|++.++. ++ +++|+|++||++.+|+..+|..++++++.++|+++++||||+| .|
T Consensus 357 --g~g~ivsf~l~~~~~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~E 429 (445)
T 1qgn_A 357 --GFGGAVSFEVDGDLLTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VE 429 (445)
T ss_dssp --CCCSEEEEEESSCHHHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SS
T ss_pred --CCCcEEEEEECCCHHHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cC
Confidence 789999999985 3558889999875 33 7999999999999999989999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHh
Q 013079 427 TLDQRWSQFEKALSRM 442 (450)
Q Consensus 427 ~~~~~i~~l~~al~~~ 442 (450)
++++++++|.++++++
T Consensus 430 did~li~~L~~al~~~ 445 (445)
T 1qgn_A 430 DFDDLKADILQALDSI 445 (445)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999999753
No 4
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=100.00 E-value=4.6e-54 Score=433.93 Aligned_cols=379 Identities=21% Similarity=0.361 Sum_probs=325.0
Q ss_pred ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
++.|+++|+ +.....+|++++|||.|+||.+++.+.+.+.+.... ...|.|+|+++|+++++|++||+++|++.++
T Consensus 25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~---~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i 101 (415)
T 2fq6_A 25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRA---NGELFYGRRGTLTHFSLQQAMCELEGGAGCV 101 (415)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTT---TTSCCCTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhcccc---CCCccccCCCCchHHHHHHHHHHHhCCCeEE
Confidence 477777774 433445799999999999999999988888876541 3469999999999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++| |++|+++++.+++++||+|+++.++|+++...+...+.+ .|+++++++.+|+++|++++ +++|++|++++|
T Consensus 102 ~~ss---Gt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~ 176 (415)
T 2fq6_A 102 LFPC---GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESP 176 (415)
T ss_dssp EESS---HHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESS
T ss_pred EeCC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECC
Confidence 9999 999999999999999999999999999998887655555 79999999999999999999 889999999999
Q ss_pred CCCcccccCHHHHHHHHHh--cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH
Q 013079 199 SNPTLAVANIPELSRLAHD--KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 275 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~--~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~ 275 (450)
+||+|.++|+++|+++|++ +|+++|+|++| .++...+..+++|++++|+||+++++|++++|++++++++++.+...
T Consensus 177 ~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~ 256 (415)
T 2fq6_A 177 GSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN 256 (415)
T ss_dssp CTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH
T ss_pred CCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHH
Confidence 9999999999999999999 99999999999 44556777889999999999999999987779999888888877665
Q ss_pred hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
+. ..|..+++..++.+.+.++++..+++++.+++..+.++|++++. ++.+|+++.+|.+++++++++ +.|+
T Consensus 257 ~~----~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~ 329 (415)
T 2fq6_A 257 AY----LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSG 329 (415)
T ss_dssp HH----HTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCS
T ss_pred HH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCce
Confidence 44 45666677777777777788888999999999999999999875 677999999999999998765 6889
Q ss_pred EEEEEeCC---HHHHHHHHHHhhccccccccccccccccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079 354 LLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 428 (450)
Q Consensus 354 ~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~--~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 428 (450)
+++|.+++ .+.+..|++.++.. + +++|+|++||++.+ |+..++... ..++|+.+++||||+| .+++
T Consensus 330 i~sf~l~g~~~~~~~~~~l~~l~~~---~-~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G-~e~~ 400 (415)
T 2fq6_A 330 LFSFVLKKKLNNEELANYLDNFSLF---S-MAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIG-LEDV 400 (415)
T ss_dssp EEEEEESSCCCHHHHHHHHTTCSSC---E-ECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECC-SSCH
T ss_pred EEEEEECCCCCHHHHHHHHHhCCcC---e-EeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEec-CCCH
Confidence 99999986 56789999998863 3 79999999999987 655443210 0246787899999999 9999
Q ss_pred HHHHHHHHHHHHHh
Q 013079 429 DQRWSQFEKALSRM 442 (450)
Q Consensus 429 ~~~i~~l~~al~~~ 442 (450)
++++++|.++|+++
T Consensus 401 ~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 401 DDLIADLDAGFARI 414 (415)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 5
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=100.00 E-value=2.4e-53 Score=427.13 Aligned_cols=372 Identities=35% Similarity=0.557 Sum_probs=328.9
Q ss_pred CChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079 39 EDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (450)
Q Consensus 39 ~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~ 117 (450)
+++.|+++|+ +.....+|++++||+.++||.+++.+. ...|.|+|+++|..++++++||+++|.+.+
T Consensus 18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~l~g~~~~ 85 (400)
T 3nmy_A 18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGE------------HQGFEYSRTHNPTRFAYERCVAALEGGTRA 85 (400)
T ss_dssp CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTB------------SSSCCBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccc------------cCCcccccCCCHHHHHHHHHHHHHhCCCCE
Confidence 5688888884 445567899999999999999887531 246899999999999999999999999999
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh-CCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 196 (450)
Q Consensus 118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~-~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~ 196 (450)
++++| |++|+.+ +..++++||+|+++.+.|+++...+... +.+ .|+++.+++.+|++++++++ ++++++|+++
T Consensus 86 ~~~~s---G~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e 159 (400)
T 3nmy_A 86 FAFAS---GMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIE 159 (400)
T ss_dssp EEESS---HHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEE
T ss_pred EEecC---HHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEE
Confidence 99999 9999998 5668899999999999999888776544 343 69999999999999999999 8899999999
Q ss_pred cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEE-EEE-cCHHHHHHHH
Q 013079 197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVC-GPANLVNSMM 273 (450)
Q Consensus 197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~-~~~~~~~~l~ 273 (450)
+|+||+|.+.|+++|+++|+++|+++|+|++| .++...+..+|+|++++|+||+++++|.++|| +++ .++++++.+.
T Consensus 160 ~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~ 239 (400)
T 3nmy_A 160 TPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMA 239 (400)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHH
T ss_pred CCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999 44556777889999999999999999988878 554 5777888887
Q ss_pred HHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCc
Q 013079 274 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 351 (450)
Q Consensus 274 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~ 351 (450)
.... ..|..+++..++++++.++.+..+++++.++++.+.++|++++. ++.+|+++++|+|++++++++ |.
T Consensus 240 ~~~~----~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~ 312 (400)
T 3nmy_A 240 FLQN----SIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GF 312 (400)
T ss_dssp HHHH----HHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SC
T ss_pred HHHH----hcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CC
Confidence 6655 55677788888888888899999999999999999999999876 789999999999999999886 89
Q ss_pred CcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079 352 GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 430 (450)
Q Consensus 352 g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 430 (450)
|++++|++++ .+.+.+|++.++.. + +++|+|+.+|++++|+++++..++++++.++|+++++||||+| .|++++
T Consensus 313 G~~~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~d 387 (400)
T 3nmy_A 313 GGIVSIVLKGGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGD 387 (400)
T ss_dssp CSEEEEEETTHHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHH
T ss_pred CceEEEEeCCcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHH
Confidence 9999999985 45678999999863 3 7999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHH
Q 013079 431 RWSQFEKALS 440 (450)
Q Consensus 431 ~i~~l~~al~ 440 (450)
++++|+++|+
T Consensus 388 li~dl~~al~ 397 (400)
T 3nmy_A 388 LRGDLERALV 397 (400)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 6
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=100.00 E-value=6.9e-52 Score=415.98 Aligned_cols=370 Identities=32% Similarity=0.465 Sum_probs=324.6
Q ss_pred CChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079 39 EDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (450)
Q Consensus 39 ~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~ 117 (450)
+++.|+++|+ +.....+|++.+||+.++||.+++. +++.+.|.|+|+.++.+++++++||+++|.+.+
T Consensus 16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~ 84 (392)
T 3qhx_A 16 AGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGV-----------GGLRGGYEYARTGNPTRTALEAALAAVEDAAFG 84 (392)
T ss_dssp CCHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSST-----------TCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCcchhheeCCCCCCCCCCCccCCcccCcceEecCc-----------ccccCCccccCCCChHHHHHHHHHHHHhCCCcE
Confidence 3788888884 4455668999999999999998763 233457999999999999999999999999999
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197 (450)
Q Consensus 118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~ 197 (450)
++|+| |++|+++++.+++++||+|+++.++|+++...+...... .|+++.+++.+|++++++++ ++++++|++++
T Consensus 85 ~~~~s---Gt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~ 159 (392)
T 3qhx_A 85 RAFSS---GMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVET 159 (392)
T ss_dssp EEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEES
T ss_pred EEECC---HHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEEC
Confidence 99999 999999999999999999999999999998887555554 79999999999999999999 88999999999
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHH
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDL 275 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~ 275 (450)
|+||||.+.|+++|+++|+++|+++|+|++| ..+...+..+++|++++|+||+++++|+.++|+++.+ +++.+.+...
T Consensus 160 ~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~ 239 (392)
T 3qhx_A 160 PTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFL 239 (392)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH
T ss_pred CCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHH
Confidence 9999999999999999999999999999999 5556677788999999999999999885445999886 6788888766
Q ss_pred hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
+. ..+...++..++++...++.+..+++++.++++++.+.|++++. .+.+|+++++|+|++++++++ |.|+
T Consensus 240 ~~----~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~ 312 (392)
T 3qhx_A 240 QN----GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGG 312 (392)
T ss_dssp HH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCS
T ss_pred HH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCce
Confidence 55 45666677777777777888888999999999999999999875 788999999999999999886 7999
Q ss_pred EEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079 354 LLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 432 (450)
Q Consensus 354 ~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i 432 (450)
+++|++++ .+.++.|++.++.. | +++|+|++|+++++|++.++..++.+ .+|+.+++||||+| .+++++++
T Consensus 313 ~~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i 384 (392)
T 3qhx_A 313 MVSVRMRAGRTAAEQLCAKTNIF---I-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLL 384 (392)
T ss_dssp EEEEEETTCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHhCCCc---e-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHH
Confidence 99999985 56688999999863 3 79999999999998888887776655 68899999999999 99999999
Q ss_pred HHHHHHH
Q 013079 433 SQFEKAL 439 (450)
Q Consensus 433 ~~l~~al 439 (450)
++|.++|
T Consensus 385 ~~l~~al 391 (392)
T 3qhx_A 385 DDLKQAL 391 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 7
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=100.00 E-value=3.7e-50 Score=403.00 Aligned_cols=380 Identities=33% Similarity=0.506 Sum_probs=329.5
Q ss_pred ChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (450)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~ 119 (450)
++.|+++|+. ....+|++.+|||.++||.+++.+++.+.+.+. ...|.|+|+++|..+++++.||+++|.+.+++
T Consensus 5 ~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~ 79 (389)
T 3acz_A 5 DITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAA 79 (389)
T ss_dssp CHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTC----SSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCC----CCCcccCCCCChHHHHHHHHHHHHhCCCeEEE
Confidence 5778888865 445689999999999999999998888877653 35689999999999999999999999999999
Q ss_pred ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079 120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 199 (450)
Q Consensus 120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~ 199 (450)
++| |++|+++++.+++++||+|+++.+.|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+
T Consensus 80 ~~s---G~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~ 154 (389)
T 3acz_A 80 FGS---GMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPA 154 (389)
T ss_dssp ESS---HHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSC
T ss_pred eCC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCC
Confidence 999 999999999988999999999999999988776443333 79999999999999999999 7899999999999
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhh
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ 277 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~ 277 (450)
||+|.+.|+++|.++|+++|+++|+|++|. .+...+..+++|++++|+||+++++|+|++|+++.++ ++++.+.....
T Consensus 155 nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~ 234 (389)
T 3acz_A 155 NPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK 234 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH
Confidence 999999999999999999999999999994 4444677789999999999999999998879998887 88888876554
Q ss_pred hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079 278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 355 (450)
Q Consensus 278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 355 (450)
..|...++..++.+...++.+..+++++.++++.+.+.|++++. ++.+|+++++|.+.++.+..+ |.|+++
T Consensus 235 ----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~ 307 (389)
T 3acz_A 235 ----DAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTF 307 (389)
T ss_dssp ----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred ----hcCCCCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEE
Confidence 34555667777777777788888889999999999999999875 788999999999999988765 689999
Q ss_pred EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079 356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 435 (450)
Q Consensus 356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 435 (450)
+|.+++.+....+++.+++.. .++|+|+.+|++++|.+.++..++++++..+|++++.||||+| .+++++++++|
T Consensus 308 ~~~l~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l 382 (389)
T 3acz_A 308 LFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADL 382 (389)
T ss_dssp EEEESSHHHHHHHHTTCSSSE----EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEEECCHHHHHHHHHhCCCcE----ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHH
Confidence 999987555667777665422 5889999999999999889999999999999999999999999 99999999999
Q ss_pred HHHHHH
Q 013079 436 EKALSR 441 (450)
Q Consensus 436 ~~al~~ 441 (450)
.++|++
T Consensus 383 ~~al~~ 388 (389)
T 3acz_A 383 KQALEL 388 (389)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999864
No 8
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.2e-49 Score=399.73 Aligned_cols=376 Identities=28% Similarity=0.431 Sum_probs=317.7
Q ss_pred CCCChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC
Q 013079 37 AWEDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115 (450)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~ 115 (450)
+.+++.++++|+ +... .+|++.+|||.++||.+++.. ...+.|.|+++.++..+++|++||+++|.+
T Consensus 4 ~~~~~~t~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~ 71 (393)
T 1n8p_A 4 ESDKFATKAIHAGEHVD-VHGSVIEPISLSTTFKQSSPA-----------NPIGTYEYSRSQNPNRENLERAVAALENAQ 71 (393)
T ss_dssp SSCCHHHHHHHTTCCCC-SSCCSSCCBCCCSBCCBSSSS-----------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCS
T ss_pred CCCCccceEEecCCCcc-CCCCcCCCcccccceeecccc-----------ccccCcceecCCChhHHHHHHHHHHHhCCC
Confidence 345787888884 4333 789999999999999987631 112468999999999999999999999998
Q ss_pred eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEE
Q 013079 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF 195 (450)
Q Consensus 116 ~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i 195 (450)
..++++| |++|++++++ ++++||+|+++.++|+++...+...+.. .|+++.+++.+| ++|++++ +++|++|++
T Consensus 72 ~~i~~~s---Gt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~ 144 (393)
T 1n8p_A 72 YGLAFSS---GSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWI 144 (393)
T ss_dssp EEEEESC---HHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEE
T ss_pred cEEEECC---hHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEE
Confidence 8999999 9999999999 8899999999999999887766545554 799999999888 9999999 788999999
Q ss_pred ecCCCCcccccCHHHHHHHHHhc----CCEEEEeCCCCCC-CCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHH
Q 013079 196 ESISNPTLAVANIPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLV 269 (450)
Q Consensus 196 ~~~~NptG~v~~l~~I~~la~~~----gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~ 269 (450)
++|+||||.++|+++|.++|+++ |+++|+|++|..+ ..++..+++|+++.|+||++|++|+|+||+++. +++++
T Consensus 145 ~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~ 224 (393)
T 1n8p_A 145 ETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLY 224 (393)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH
T ss_pred ECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHH
Confidence 99999999999999999999999 9999999999332 236667789999999999999999998899987 47888
Q ss_pred HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC---eeeCCCCCCCchhHHHHHHhc
Q 013079 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMAN 346 (450)
Q Consensus 270 ~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---~v~~p~~~~~p~~~l~~~~~~ 346 (450)
+.+...+. ..|..+++..++.+...++.+..++++..++++.+.+.|++++. .+.+|++.++|.++++.+..+
T Consensus 225 ~~l~~~~~----~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~ 300 (393)
T 1n8p_A 225 ERLQFLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300 (393)
T ss_dssp HHHHHHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG
T ss_pred HHHHHHHH----hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC
Confidence 88876654 34445556666655566677888888888999999999988764 466899888899999887665
Q ss_pred cCCC-c-CcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079 347 KEYG-F-GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423 (450)
Q Consensus 347 ~~~g-~-g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g 423 (450)
+ . |++++|.++ ....+..|++.++..+ +++|+|++||++.+|+..+|..++.+++.++|++++.||||+|
T Consensus 301 ---~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~----~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g 373 (393)
T 1n8p_A 301 ---DALGGGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG 373 (393)
T ss_dssp ---GGCCCSEEEEEESSCHHHHHHHHHHCSSSE----ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC
T ss_pred ---CCCCccEEEEEeCCcHHHHHHHHhhCCcce----ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc
Confidence 4 5 889999998 4456888999987633 7999999999999888888888888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 013079 424 YLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 424 ~~~~~~~~i~~l~~al~~~~ 443 (450)
.+++++++++|.++|+++.
T Consensus 374 -~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 374 -IEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp -SSCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 9
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=100.00 E-value=1.8e-48 Score=392.41 Aligned_cols=378 Identities=29% Similarity=0.460 Sum_probs=312.0
Q ss_pred CCCChhHHHhhcC-CCCCCC-CcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC
Q 013079 37 AWEDPAAALASAR-HEFGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114 (450)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~-~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~ 114 (450)
+.+++.|+++|+. .....+ |++.+||+.+|||.+++..+ ...|.|+|+++|...++++.||+++|.
T Consensus 15 ~~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~~~g~ 82 (403)
T 3cog_A 15 HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ------------HSGFEYSRSGNPTRNCLEKAVAALDGA 82 (403)
T ss_dssp CCTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------------------CHHHHHHHHHHHHHHTC
T ss_pred ccCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccc------------cCCCcccCCCCchHHHHHHHHHHHhCC
Confidence 3457888888854 434457 89999999999999887532 123779999999999999999999999
Q ss_pred CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEE
Q 013079 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 194 (450)
Q Consensus 115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~ 194 (450)
+..+++++ |++|+++++. ++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ +++|++|+
T Consensus 83 ~~~i~~~s---G~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~ 156 (403)
T 3cog_A 83 KYCLAFAS---GLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVW 156 (403)
T ss_dssp SEEEEESC---HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEE
T ss_pred CcEEEECC---HHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEE
Confidence 88888889 9999999999 8899999999999999988776545454 79999999998999999999 78999999
Q ss_pred EecCCCCcccccCHHHHHHHHHhcC-CEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHH
Q 013079 195 FESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNS 271 (450)
Q Consensus 195 i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~ 271 (450)
+++|+||||.+.|+++|+++|+++| +++|+|++|. .....+..+++|++++|+||+++++|++++|+++. ++++++.
T Consensus 157 ~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~ 236 (403)
T 3cog_A 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR 236 (403)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH
T ss_pred EECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH
Confidence 9999999999999999999999999 9999999994 33345667899999999999999888743599987 4788888
Q ss_pred HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCC
Q 013079 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY 349 (450)
Q Consensus 272 l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~ 349 (450)
+..... ..+...++..++++.+.++++..+++++.+++..+.++|++++. ++.+|+++++|.++++.+..+
T Consensus 237 l~~~~~----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~--- 309 (403)
T 3cog_A 237 LRFLQN----SLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT--- 309 (403)
T ss_dssp HHHHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---
T ss_pred HHHHHH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---
Confidence 876554 34555566666666667788888899999999999999998876 788999999999998887654
Q ss_pred CcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079 350 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 428 (450)
Q Consensus 350 g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 428 (450)
+.|++++|.++ ..+...++++.+++.. .++|+|+.+|++++|++.++..++++.+..+|+++++||||+| .+++
T Consensus 310 ~~g~~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~ 384 (403)
T 3cog_A 310 GCTGMVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDE 384 (403)
T ss_dssp CCCSEEEEEESSCHHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCH
T ss_pred CCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCH
Confidence 68999999997 4456777888776522 5899999999999999988889999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q 013079 429 DQRWSQFEKALSRMQD 444 (450)
Q Consensus 429 ~~~i~~l~~al~~~~~ 444 (450)
++++++|.++|.++.+
T Consensus 385 ~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 385 EDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988754
No 10
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=100.00 E-value=3.8e-48 Score=389.54 Aligned_cols=382 Identities=36% Similarity=0.513 Sum_probs=295.8
Q ss_pred ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
++.++++|+ +.....++++.+|+++++|+.+++.++.... ++|+.+.|.|+|+.++..+++++.+|+++|.+..+
T Consensus 9 ~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i 84 (398)
T 1gc0_A 9 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAAC----FAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL 84 (398)
T ss_dssp CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHh----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEE
Confidence 577777774 4434567999999999999999986554432 56677789999999999999999999999999899
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++| |++|+++++.+++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|
T Consensus 85 ~~~s---G~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 159 (398)
T 1gc0_A 85 ALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESP 159 (398)
T ss_dssp EESS---HHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESS
T ss_pred EECC---HHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECC
Confidence 9999 999999999999999999999999999998877544444 79999999999999999999 789999999999
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHHh
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLH 276 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~ 276 (450)
+||||.+.|+++|+++|+++|+++|+|++|. .....+...++|+++.|+||+++++|++++|+++.+++.+. .+....
T Consensus 160 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~ 239 (398)
T 1gc0_A 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL 239 (398)
T ss_dssp CTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHh
Confidence 9999999999999999999999999999993 22334556789999999999999999888899999887665 454433
Q ss_pred hhhhhc-cCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 277 QGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 277 ~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
. . .+.+.++..++.+...++.+..++++..++++.+.+.|++++. ++.+|+++++|.++++.+..+ +.|+
T Consensus 240 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~ 312 (398)
T 1gc0_A 240 K----DMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGG 312 (398)
T ss_dssp H----HHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTT
T ss_pred h----ccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCce
Confidence 3 2 4555666666666667778888889999999999999999875 677899988898888876544 6899
Q ss_pred EEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079 354 LLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 432 (450)
Q Consensus 354 ~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i 432 (450)
+++|.+++. +.+..+++.+++.. +++|+|++++++++|.+.++..++.+++..+|++++.||||+| .+++++++
T Consensus 313 ~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i 387 (398)
T 1gc0_A 313 MIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLL 387 (398)
T ss_dssp EEEEEETTHHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHH
T ss_pred EEEEEECCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHH
Confidence 999999853 45677888877532 6889999999999999888889999999999999999999999 99999999
Q ss_pred HHHHHHHHHh
Q 013079 433 SQFEKALSRM 442 (450)
Q Consensus 433 ~~l~~al~~~ 442 (450)
++|.++|+++
T Consensus 388 ~~l~~al~~~ 397 (398)
T 1gc0_A 388 ADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 11
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.6e-47 Score=387.86 Aligned_cols=384 Identities=30% Similarity=0.427 Sum_probs=319.7
Q ss_pred ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
++.++++|+ ......+|++.+||++++||.+++.+.+...+. ++..+|.|+|+.++..++++++||+++|.+..+
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v 77 (421)
T 2ctz_A 2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFA----LKEFGNIYSRIMNPTVDVLEKRLAALEGGKAAL 77 (421)
T ss_dssp CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHT----TTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhc----cccCCCcccCCCChHHHHHHHHHHHHhCCCceE
Confidence 456677774 444446899999999999999999877776653 335578999999999999999999999998889
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe-CCCCHHHHHHhhhcCCceEEEEec
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFES 197 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v-~~~d~~~l~~ai~~~~t~lv~i~~ 197 (450)
++++ |++|+++++.+++++||+|+++.++|+++...+...... .|+++.++ +.+|++++++++ +++|++|++++
T Consensus 78 ~~~s---Gt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 152 (421)
T 2ctz_A 78 ATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVES 152 (421)
T ss_dssp EESS---HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEES
T ss_pred EecC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEEC
Confidence 9999 999999999998999999999999999988876433333 79999999 888999999999 78999999999
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-C-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC--HHH----H
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----V 269 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~----~ 269 (450)
++||+|.+.|+++|.++|+++|+++|+|++| + ++...+...++|++++|+||+++++|+++||+++.+ .++ +
T Consensus 153 ~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~ 232 (421)
T 2ctz_A 153 IGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRY 232 (421)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTC
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccch
Confidence 9999999999999999999999999999999 3 333456667899999999999999998886777653 222 1
Q ss_pred HHHHH----------------------HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--
Q 013079 270 NSMMD----------------------LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-- 325 (450)
Q Consensus 270 ~~l~~----------------------~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-- 325 (450)
+.+.. .+.......|..+.+..+++...+++.+..+++++.++++++.+.|++++.
T Consensus 233 ~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~ 312 (421)
T 2ctz_A 233 PLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVA 312 (421)
T ss_dssp HHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCee
Confidence 22211 111011134556777777777778888888899888999999999999865
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079 326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404 (450)
Q Consensus 326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~ 404 (450)
.+.+|+++++|+|++++++++. +.|++++|.+++. +.+..|++.++.. + +++|+|+.++++.+|+..+|..++
T Consensus 313 ~v~~p~~~~~~~~~~~~~~~~~--~~g~ivsf~l~~~~~~~~~~~~~l~~~---~-~~~~~G~~~sl~~~~~~~~h~~~~ 386 (421)
T 2ctz_A 313 WVNYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLI---S-HLANVGDTRTLAIHPASTTHSQLS 386 (421)
T ss_dssp EEECTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCCCSSCEEECGGGTTTTTSC
T ss_pred EEECCCCCCCCCHHHHHHhccC--CCceEEEEEeCCCHHHHHHHHHhCCcc---e-ecccCCCCCceeeCCcccccccCC
Confidence 4557999999999999988721 6899999999863 5678899998763 3 789999999999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079 405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439 (450)
Q Consensus 405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 439 (450)
++.+..+|+++++||+|+| .+++++++++|.++|
T Consensus 387 ~~~~~~~g~~~~~vRlS~g-~e~~~~li~~l~~al 420 (421)
T 2ctz_A 387 PEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp HHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence 9889999999999999999 999999999999986
No 12
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=100.00 E-value=5.8e-46 Score=375.37 Aligned_cols=378 Identities=32% Similarity=0.471 Sum_probs=313.6
Q ss_pred ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
++.+.++|+ .+.. .+|+++|||+.++|+.+++++.+.+.+. . ...|.|++..++..+++++++|+++|.+.++
T Consensus 2 ~~~t~~~~~~~~~~-~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~ 75 (412)
T 2cb1_A 2 EYTTLAVLAGLPED-PHGAVGLPIYAVAAYGFKTLEEGQERFA-T----GEGYVYARQKDPTAKALEERLKALEGALEAV 75 (412)
T ss_dssp CHHHHHHHTTCCCC-TTCCSSCCCCCCSBCCCSSHHHHHHHHH-H----CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CccceeeecCCCcC-CCCCcCCCccccceeecCChHHHHHHhc-c----ccCcCcCCCCChHHHHHHHHHHHHhCCCcEE
Confidence 455666774 4333 6899999999999999999888777765 2 2458899999999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+|+| |++|+++++.+++++||+|+++.++|+++...+...... .|+++.+++.+ +++|++++ ++++++|++++|
T Consensus 76 ~~~~---gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~ 149 (412)
T 2cb1_A 76 VLAS---GQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETV 149 (412)
T ss_dssp EESS---HHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESS
T ss_pred EECC---HHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCC
Confidence 9999 999999999999999999999999999988777554554 79999999864 99999999 789999999999
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCC-C-CCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH----------
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---------- 266 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~-~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---------- 266 (450)
+||+|.+.|+++|+++|+++|+++|+|++|+ . +...+...++|+++.|+||+++++|+++||+++.++
T Consensus 150 ~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~ 229 (412)
T 2cb1_A 150 ANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQF 229 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGG
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccc
Confidence 9999999999999999999999999999993 3 455666778999999999999999998866666652
Q ss_pred -----------------HHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--ee
Q 013079 267 -----------------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV 327 (450)
Q Consensus 267 -----------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v 327 (450)
++.+.++... ....|..+.+..++.....++.+..++++..++++++.+.|.+++. .+
T Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~r~~~---~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v 306 (412)
T 2cb1_A 230 LQPDLKGQIPWEALRARCFPERVRTLG---LSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKAL 306 (412)
T ss_dssp GCC-------HHHHGGGHHHHHHHHHH---TTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred ccccccccchhhccchHHHHHHHHHHH---HHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 2333333322 1133445567777776667788888888888899999999998754 47
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHH
Q 013079 328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407 (450)
Q Consensus 328 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~ 407 (450)
.+|+.+++|+|++++++++ +.|++++|.+.+.+....+++.+.+ + . +.|+|+.++++.+|++..+..+++++
T Consensus 307 ~~p~~~~~p~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i---~-~-~~s~g~~~sl~~~~~~~~~~~~~~~~ 378 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRL---L-K-AANLGDARTLLVHPWTTTHSRLKEEA 378 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSS---E-E-CSCCSCSSCEEECTTTTTTTTSCHHH
T ss_pred ECCCCCCCccHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCe---e-e-ecccCCCcceeecCcccccccCCHHH
Confidence 7899999999999999886 6899999999544455666666553 1 2 66888999999888888888889999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 408 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+.++|++++.||+|+| .+++++++++|.++|++
T Consensus 379 ~~~~g~~~~~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 379 RLQAGVTPGLVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred HHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999999999875
No 13
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=7e-46 Score=373.74 Aligned_cols=385 Identities=34% Similarity=0.555 Sum_probs=320.5
Q ss_pred CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
|++.++++|+......++++.+|++.++++.++.+.++.+.+.. +.+.|.|++.+++..+++++.||+++|.+.++
T Consensus 6 ~~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i 81 (404)
T 1e5e_A 6 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAG----QESGYIYTRLGNPTVSNLEGKIAFLEKTEACV 81 (404)
T ss_dssp CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTT----SSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcC----CcCCccccCCcChHHHHHHHHHHHHhCCCcEE
Confidence 45777877754324457899999999999999988666555433 34568899988999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++| |++|+++++.+++++||+|+++.|.|+++...+...... .|+++.+++.+|+++|++++ +++|++|++++|
T Consensus 82 ~~~~---g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p 156 (404)
T 1e5e_A 82 ATSS---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETP 156 (404)
T ss_dssp EESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESS
T ss_pred EeCC---hHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECC
Confidence 9999 999999999999999999999999999998854332333 79999999988999999999 789999999999
Q ss_pred CCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHH
Q 013079 199 SNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDL 275 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~ 275 (450)
+||||.+.|+++|+++|++ +|+++|+|++|..+. ..+..+++|+++.|+||+++++|+|++|++++++++++ .+...
T Consensus 157 ~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~ 236 (404)
T 1e5e_A 157 ANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG 236 (404)
T ss_dssp CTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH
Confidence 9999999999999999999 999999999995443 35666789999999999999999987799999988877 66554
Q ss_pred hhhhhhcc-CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079 276 HQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 352 (450)
Q Consensus 276 ~~~~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 352 (450)
.. .. +...++..++++...++.+..++++..++++.+.+.|++++. ++.+|.+++.|.++++....+ +.|
T Consensus 237 ~~----~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g 309 (404)
T 1e5e_A 237 IK----DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYG 309 (404)
T ss_dssp CC----CCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCC
T ss_pred HH----hCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCc
Confidence 43 23 444555555555556677778888888899999999998864 577899998999988887654 679
Q ss_pred cEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079 353 GLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 431 (450)
Q Consensus 353 ~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 431 (450)
+++.|.+++. +...++++.+++.. .++|+|+.+|++.+|++.++..++++++...|+++++||||+| .++.+++
T Consensus 310 ~~~~~~~~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~l 384 (404)
T 1e5e_A 310 SMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADEL 384 (404)
T ss_dssp SEEEEEETTHHHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHH
Confidence 9999999864 44566776665421 5788999999999999988989999999999998899999999 8999999
Q ss_pred HHHHHHHHHHhhh
Q 013079 432 WSQFEKALSRMQD 444 (450)
Q Consensus 432 i~~l~~al~~~~~ 444 (450)
+++|.+++..+.+
T Consensus 385 i~~l~~al~~~~~ 397 (404)
T 1e5e_A 385 IADFKQGLDALLR 397 (404)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 14
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=3e-44 Score=361.11 Aligned_cols=383 Identities=35% Similarity=0.568 Sum_probs=313.2
Q ss_pred CChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (450)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~ 117 (450)
+++.++++|+. .....++++..|++.++++..+.+.+.... +.++.+.|.|+++.++..+++++++++++|.+..
T Consensus 7 ~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~ 82 (398)
T 2rfv_A 7 YGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAAR----FALEESGYIYTRLGNPTTDALEKKLAVLERGEAG 82 (398)
T ss_dssp SCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHH----C-----CCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHh----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcE
Confidence 46778888854 334567899999999999999987544433 4455677999999999999999999999999988
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197 (450)
Q Consensus 118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~ 197 (450)
+++++ |++|+++++++++++||+|+++.+.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++
T Consensus 83 i~~~s---G~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~ 157 (398)
T 2rfv_A 83 LATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIET 157 (398)
T ss_dssp EEESS---HHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEES
T ss_pred EEECC---HHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEEC
Confidence 99999 999999999999999999999999999998876433233 68999999999999999999 78999999999
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHH
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDL 275 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~ 275 (450)
|+||||.+.|+++|+++|+++|+++|+|++|. .....+..+++|+++.|+||+++++|+|++|+++.++++++ .+...
T Consensus 158 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~ 237 (398)
T 2rfv_A 158 PANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG 237 (398)
T ss_dssp SBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHH
Confidence 99999999999999999999999999999994 33335666789999999999999999887799999988876 55443
Q ss_pred hhhhhhcc-CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079 276 HQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 352 (450)
Q Consensus 276 ~~~~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 352 (450)
.. .. +.+.++..++.+...++.+..++++..++++.+.+.|++++. .+.+|.++..|.++++....+ +.|
T Consensus 238 ~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g 310 (398)
T 2rfv_A 238 LK----DITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPG 310 (398)
T ss_dssp HH----HTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCC
T ss_pred HH----hCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCc
Confidence 33 22 344455555554555566777888888899999999998874 677888888888888765433 678
Q ss_pred cEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079 353 GLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 431 (450)
Q Consensus 353 ~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 431 (450)
++++|++++. +....+++.+... | ++++.|+.++++.++.+.++..++.+++..+|++++.||||+| .++++++
T Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~~---~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~ 385 (398)
T 2rfv_A 311 GIISFEIAGGLEAGRRMINSVELC---L-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDI 385 (398)
T ss_dssp SEEEEEETTHHHHHHHHHTTCSSS---E-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred eEEEEEEcCCHHHHHHHHHhCCcc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHH
Confidence 9999999853 4567787777653 3 7899999999988887777778888888899998999999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013079 432 WSQFEKALSRM 442 (450)
Q Consensus 432 i~~l~~al~~~ 442 (450)
+++|.++|+++
T Consensus 386 i~~l~~al~~~ 396 (398)
T 2rfv_A 386 INDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 15
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=5.2e-42 Score=343.29 Aligned_cols=374 Identities=29% Similarity=0.410 Sum_probs=300.9
Q ss_pred CChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079 39 EDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (450)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~ 117 (450)
+++.++++| |+.....+|++.+||+.++|+.+++. ++ ...|.|+++.++...++++.||++++.+..
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 70 (386)
T 1cs1_A 3 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGF-----------NE-PRAHDYSRRGNPTRDVVQRALAELEGGAGA 70 (386)
T ss_dssp CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBT-----------TB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCcceeEEecCCCccccCCCCCCCccccceeecccc-----------CC-CCCcceeCCCCccHHHHHHHHHHHhCCCcE
Confidence 356677777 44444568999999999999998652 11 246889999999999999999999998888
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197 (450)
Q Consensus 118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~ 197 (450)
+++++ |++|+++++++++++||+|+++.++|+++...+...... .|.++.+++.+|++++++++ ++++++|++++
T Consensus 71 i~~~s---Gt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 145 (386)
T 1cs1_A 71 VLTNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVES 145 (386)
T ss_dssp EEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEEC
T ss_pred EEeCC---HHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeC
Confidence 88899 999999999998999999999999999877766444343 79999999988999999999 78899999999
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHH
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDL 275 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~ 275 (450)
|+||||.+.|+++|.++|+++|+++|+|++|..+. ..+...++|+++.|+||++++++.++||+++.++ ++++.+...
T Consensus 146 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~ 225 (386)
T 1cs1_A 146 PSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW 225 (386)
T ss_dssp SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999994433 3455678999999999999989888779988875 788888765
Q ss_pred hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
.. ..+...++..++.+...++.+..+.++..++++.+.+.|++++. .+.+|.+...|.++++....+ +.|+
T Consensus 226 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~ 298 (386)
T 1cs1_A 226 AN----NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGA 298 (386)
T ss_dssp HH----HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCS
T ss_pred HH----hcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcC---CCce
Confidence 54 22333444444444445566777788888889999999988765 556788888888888776533 6789
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccc---cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079 354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVS---LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 430 (450)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs---~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 430 (450)
+++|.+++. .+.+...|.. .| +.++ +|+..|++++|.+..+...+.+.+..+|+.++.||||+| .+++++
T Consensus 299 ~~~~~~~~~--~~~~~~~l~~---~g-i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~ 371 (386)
T 1cs1_A 299 MLSFELDGD--EQTLRRFLGG---LS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGED 371 (386)
T ss_dssp EEEEEESSC--HHHHHHHHHT---CS-SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHH
T ss_pred EEEEEECCC--HHHHHHHHHh---CC-cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHH
Confidence 999999742 2333344433 22 3443 788888888888777777788888888998899999999 999999
Q ss_pred HHHHHHHHHHHhh
Q 013079 431 RWSQFEKALSRMQ 443 (450)
Q Consensus 431 ~i~~l~~al~~~~ 443 (450)
+++.|.++|+++.
T Consensus 372 ~i~~l~~al~~~~ 384 (386)
T 1cs1_A 372 LIADLENGFRAAN 384 (386)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 16
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=1.6e-41 Score=347.03 Aligned_cols=373 Identities=29% Similarity=0.460 Sum_probs=300.6
Q ss_pred CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (450)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~ 118 (450)
+.+.+.+++-....+..+++++||+.++++.+++.. ....|.|++.+++..+++++.+++++|++.++
T Consensus 85 ~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~------------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i 152 (464)
T 1ibj_A 85 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAI------------ENGPYDYTRSGNPTRDALESLLAKLDKADRAF 152 (464)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSS------------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhccc------------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 456666776432113567899999999998765421 02357788999999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079 119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++| |++|+++++. ++++||+|+++.+.|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|
T Consensus 153 ~~~s---Gt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p 226 (464)
T 1ibj_A 153 CFTS---GMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESP 226 (464)
T ss_dssp EESS---HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSS
T ss_pred EECC---HHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCC
Confidence 9999 9999998885 7899999999999999998776544443 79999999999999999999 789999999999
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccC-ccceEEEEEcC-HHHHHHHHHH
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDL 275 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~-g~~igG~l~~~-~~~~~~l~~~ 275 (450)
+||||.+.|+++|+++|+++|+++|+|++| .+....+..+++|++++|+||+++++ |.++ |+++++ +++++.+...
T Consensus 227 ~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~ 305 (464)
T 1ibj_A 227 TNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFL 305 (464)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHH
T ss_pred CCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999 44445566789999999999999865 6565 898887 4788877665
Q ss_pred hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
+. ..|...++..++++...++.+..++++...+...+.+.|++++. ++.++.+..+|.++++.... .+.|+
T Consensus 306 ~~----~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~ 378 (464)
T 1ibj_A 306 QN----SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGS 378 (464)
T ss_dssp HH----HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCS
T ss_pred HH----hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCce
Confidence 54 34444555555555556677777888877888888899988763 77889998888877765433 36789
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079 354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 433 (450)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 433 (450)
+++|.+++.+....|++.|... | ++++.|+.++++++|+..++...+.+.+..+|+++++||||+| .++.+++++
T Consensus 379 ~~~~~l~~~~~~~~~~~~L~~~---g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~ 453 (464)
T 1ibj_A 379 VFSFITGSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLIS 453 (464)
T ss_dssp EEEEECSCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHH
T ss_pred EEEEEECCHHHHHHHHHhcCcc---e-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHH
Confidence 9999997655456788888753 3 7999999999999887766666665566667888899999999 899999999
Q ss_pred HHHHHHHHh
Q 013079 434 QFEKALSRM 442 (450)
Q Consensus 434 ~l~~al~~~ 442 (450)
+|.++|.++
T Consensus 454 ~L~~al~~~ 462 (464)
T 1ibj_A 454 DLDIAFKTF 462 (464)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhhc
Confidence 999998753
No 17
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=100.00 E-value=4.4e-37 Score=300.73 Aligned_cols=323 Identities=33% Similarity=0.541 Sum_probs=259.3
Q ss_pred HHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHH
Q 013079 103 NLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182 (450)
Q Consensus 103 ~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~ 182 (450)
++++.+|+++|.+..+++++ |++|+++++.+++++||+|+++.++|+++...+..+... .|.++.+++..|+++++
T Consensus 2 ~l~~~la~~~g~~~~i~~~s---G~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~ 77 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIE 77 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHH
T ss_pred hHHHHHHHHhCCCeEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHH
Confidence 68999999999998899999 999999999998999999999999999987776432222 68899999988999999
Q ss_pred HhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCC-CCCccCCCCeEEEeCCCCccccCccceEE
Q 013079 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAG 260 (450)
Q Consensus 183 ~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG 260 (450)
+++ ++++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|... ...+.+.++|+++.|+||+++++|+|++|
T Consensus 78 ~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G 156 (331)
T 1pff_A 78 KHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAG 156 (331)
T ss_dssp HTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCE
T ss_pred Hhh-cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEE
Confidence 999 7889999999999999999999999999999 99999999999322 22344678999999999999999988559
Q ss_pred EEEcCH-HHHHHHHHHhhhhhhc-cCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCc
Q 013079 261 AVCGPA-NLVNSMMDLHQGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHP 336 (450)
Q Consensus 261 ~l~~~~-~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p 336 (450)
+++.++ ++++.+..... . .+...++..++.+...++.+..+.++..++.+.+.+.|++++. .+.++.+.+.|
T Consensus 157 ~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~ 232 (331)
T 1pff_A 157 LVCSRADIIAKVKSQGIK----DITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHP 232 (331)
T ss_dssp EEEECHHHHHHHHHTCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTST
T ss_pred EEEeCcHHHHHHHHHHHH----hhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 999998 88887765544 2 3344444444444444555666777778888888999988743 56678888888
Q ss_pred hhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079 337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 416 (450)
Q Consensus 337 ~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 416 (450)
...++....+ +.|++++|.+++.+....+++...+. ..++|+|+.+|++.+++...+..++.+.+..+|++++
T Consensus 233 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gI~----~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 305 (331)
T 1pff_A 233 GHEIAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHVV----SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDN 305 (331)
T ss_dssp THHHHHHHCS---SCCSEEEEECSSHHHHHHHHHTCSSS----EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTT
T ss_pred cHHHHHhhCC---CCceEEEEEECCHHHHHHHHHhCCCc----eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCC
Confidence 7777765443 67899999998544444444443321 0267899999998888777777788888888999889
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 417 ~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.||||+| .++++++++.+.++|+++
T Consensus 306 ~iRis~~-~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 306 LIRLSVG-CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEe-cCCHHHHHHHHHHHHHHh
Confidence 9999999 999999999999998753
No 18
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=100.00 E-value=1.3e-32 Score=277.16 Aligned_cols=331 Identities=18% Similarity=0.200 Sum_probs=252.5
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHH--
Q 013079 85 GPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALL-- 158 (450)
Q Consensus 85 ~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~-- 158 (450)
.+++++|.|++. .++++++.+|+++|++.+++ ++| |++|+.+++.+++++||+|++++ +.|+++...+
T Consensus 62 ~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~s---Gt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~ 135 (427)
T 3i16_A 62 FTNSSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVN---GTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGI 135 (427)
T ss_dssp SCCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCS---HHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTC
T ss_pred cCCCCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCcc---HHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhc
Confidence 344677888865 48999999999999998877 899 99999999999999999999998 9999887665
Q ss_pred -----HHhCCCccCeeEEEeCC-----CCHHHHHHhhhc--CCceEEEEec----CCCCcccccCHHHHHHHHHh--cCC
Q 013079 159 -----THFFPRACNITTTFVDI-----SDHEMVNSAIVQ--GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGV 220 (450)
Q Consensus 159 -----~~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~--~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi 220 (450)
...+.. .|+++++++. .|++++++++ + ++|++|++++ |+||+|.+.|+++|+++|++ +|+
T Consensus 136 ~~~~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l-~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~ 213 (427)
T 3i16_A 136 TENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDI 213 (427)
T ss_dssp SCCCSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHH-HTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTS
T ss_pred cccchHHHHHH-cCCEEEEecCccCCCcCHHHHHHHh-hCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCC
Confidence 123333 6999999987 4999999999 6 7899999999 99999999999999999999 999
Q ss_pred EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH-H-HHHHHH
Q 013079 221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP-K-VAFELS 296 (450)
Q Consensus 221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-~a~~~~ 296 (450)
++|+|++|+.+ ...+...++|++++|+||++|++|...||++++++++++.+....... ..|....+ . .+++++
T Consensus 214 ~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~l 291 (427)
T 3i16_A 214 ICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP--GIGGECGSTFGVVRSMY 291 (427)
T ss_dssp EEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHH
T ss_pred EEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC--ccCccCCccHHHHHHHH
Confidence 99999999443 467777899999999999999887666799999999999887643211 12211111 2 256667
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079 297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 376 (450)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~ 376 (450)
++++.+..|++++.+++.++++.|+++|.+| +|+ +++|.|+ .+++|.+.+.+.+.+|++.|+...
T Consensus 292 ~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~~-------------~i~~i~l~~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 292 QGLFLAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKRSD-------------IIQSIKFNDKDKLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCSS-------------SCEEEECSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCcc-------------EEEEEEECCHHHHHHHHHHHhhcC
Confidence 7788888999999999999999999999988 787 6666643 289999998888999999998632
Q ss_pred ccccc-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 377 QFGFM-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 377 ~~g~i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..+.. ....|..+.++...+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus 357 ~~~s~~~p~~~~~~gy~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 357 PIDSFVSCEPWDMPGYTDQVIMAAGAF-IQGSSIELSADAPIREPYIAYLQG-GLTFDHAKIGILIALSRI 425 (427)
T ss_dssp SSSTTSCCCCBCC---CCCEEEEECCS-STTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred cccccccCcCCCCCCCCCceeeccCcC-CCCccccccCCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHHH
Confidence 11111 12345555554443331 111111111223456788999999 878888877888887765
No 19
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=100.00 E-value=1.2e-32 Score=276.45 Aligned_cols=330 Identities=19% Similarity=0.216 Sum_probs=251.8
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH--
Q 013079 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT-- 159 (450)
Q Consensus 86 n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~-- 159 (450)
++++.|.|++. ..+++++.+|+++|++.+++ |+| |++|+.+++.+++++||+|+++. +.|.++...+.
T Consensus 49 ~~~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~s---Gt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 49 HPSTGYGYDDE---GRDTLERVYATVFKTEAALVRPQIIS---GTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp CCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCS---HHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCcc---HHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence 44677888865 58899999999999998877 899 99999999999999999999998 99999886652
Q ss_pred ----HhCCCccCeeEEEeCC-----CCHHHHHHhhhcCCceEEEEec----CCCCcccccCHHHHHHHHHh--cCCEEEE
Q 013079 160 ----HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVV 224 (450)
Q Consensus 160 ----~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi~liv 224 (450)
..+.. .|+++.+++. .|++++++++ +++|++|++++ |+||+|.+.|+++|+++|++ +|+++|+
T Consensus 123 g~~~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~liv 200 (409)
T 3jzl_A 123 KQGQGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFV 200 (409)
T ss_dssp SSSSSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cchhhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEE
Confidence 23333 6899999987 5999999999 88999999999 99999999999999999999 9999999
Q ss_pred eCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCC
Q 013079 225 DNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIP 300 (450)
Q Consensus 225 D~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~ 300 (450)
|++|+.+ ...+...++|++++|+||++++++.++||++++++++++.+..... +.....++.+.+. +.++++++
T Consensus 201 D~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~--~~~l~gl~ 278 (409)
T 3jzl_A 201 DNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFF 278 (409)
T ss_dssp ECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCH--HHHHHHHH
T ss_pred eCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHH--HHHHHHHh
Confidence 9999544 3567778999999999999998887778999999999998876432 1112344444322 33455667
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 380 (450)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~ 380 (450)
.+..+++++.+++.++++.|+++|.++ +|+ +++|.| ..+++|.+++.+.+.+|++.|+.....+.
T Consensus 279 ~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~~-------------~~i~~i~l~~~~~~~~~~~~L~~~~~~~s 343 (409)
T 3jzl_A 279 LAPHVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPRT-------------DLIQSVSFHNKEKMVAFAQAIQAASPVNA 343 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSCCEEECSCHHHHHHHHHHHHHTSSSST
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCCc-------------cEEEEEEeCCHHHHHHHHHHHHhcCcccc
Confidence 788899999999999999999999987 776 555553 33899999988889999999986321111
Q ss_pred c-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 381 M-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 381 i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
. ....|..+.++...+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus 344 ~~~p~~~~~~gy~~~~~~~~~~f-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 344 HVLPIGAYMPGYEDDVIMAAGTF-IQGASLELTADGPIREPYQLYVQG-GLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp TSCCCCBCCTTCSSCEEEECCCS-STTCSSSCEEEEESSTTTEEEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCceeEecccc-CCCcceeecCCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHhh
Confidence 1 11224444444433321 111111111223456788999999 878888777777777664
No 20
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=5.9e-32 Score=272.40 Aligned_cols=331 Identities=21% Similarity=0.237 Sum_probs=249.7
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH
Q 013079 84 LGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT 159 (450)
Q Consensus 84 ~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~ 159 (450)
+++ ..+|.|++. .++++++.+|+++|++.+++ ++| |++|+.+++.+++++||+|++.+ +.|+++...+.
T Consensus 63 ~~~-~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~s---Gt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 63 FTN-SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVN---GTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp SCC-CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCS---HHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHT
T ss_pred ccc-CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCc---HHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhc
Confidence 444 567888765 48999999999999998888 899 99999999999999999999998 99998875551
Q ss_pred -------HhCCCccCeeEEEeCC----CCHHHHHHhhhc--CCceEEEEec----CCCCcccccCHHHHHHHHHh--cCC
Q 013079 160 -------HFFPRACNITTTFVDI----SDHEMVNSAIVQ--GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGV 220 (450)
Q Consensus 160 -------~~~~~~~g~~v~~v~~----~d~~~l~~ai~~--~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi 220 (450)
..+.. .|+++.+++. .|+++|++++ + ++|++|++++ |+||+|.+.|+++|+++|++ +|+
T Consensus 136 ~~~~~~~~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i-~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~ 213 (427)
T 3hvy_A 136 MDDSKKVGSLRE-YGVKYKMVDLKDGKVDINTVKEEL-KKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV 213 (427)
T ss_dssp CCTTCCSCCTGG-GTCEEEECCCBTTBCCHHHHHHHH-HHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS
T ss_pred cccchhhhHHHH-cCCEEEEecCCCCCcCHHHHHHHh-hCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC
Confidence 22333 6999999987 6999999999 6 7999999999 99999999999999999999 899
Q ss_pred EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHH
Q 013079 221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELS 296 (450)
Q Consensus 221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~ 296 (450)
++++|++|+.+ ...+...++|++++|+||+++++|.+.||++++++++++.++.... +.....++++. .+++++
T Consensus 214 ~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~~ 291 (427)
T 3hvy_A 214 IVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFG--VMRSLY 291 (427)
T ss_dssp EEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHH
T ss_pred EEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHH--HHHHHH
Confidence 99999999443 4577778999999999999998876678999999999999877432 11112222222 245566
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079 297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 376 (450)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~ 376 (450)
++++.++.+++++.+++.++++.|+++|.++ +|+ +++|.| ..+++|.+.+.+.+.+|++.|+...
T Consensus 292 ~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~-------------~li~~~~l~~~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 292 EGLFMAPHVTIEAVKGAVFCARIMELAGFDV-LPK-YNDKRT-------------DIIQAIKFNDEKKLIDFIKGIQTAS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSEEEEECSSHHHHHHHHHHHHHTC
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCc-------------eEEEEEeCCCHHHHHHHHHHhcccc
Confidence 6777788899999999999999999999987 777 655554 3389999998888999999998632
Q ss_pred ccccc-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 377 QFGFM-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 377 ~~g~i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..+.. ....|..+.++.+.+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus 357 ~~~s~~~p~~~~~~Gy~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 357 PVDSFVQCEAWDMPGYEDKVIMAAGTF-VQGASIELSADAPIREPYIGYLQG-GLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp SSSTTCCC----------CEEEECCCS-STTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCCCCCCcCceeeecccc-CCCccccccCCCCCCCCeeEEEcC-CccHHHHHHHHHHHHHHh
Confidence 11111 12234444444443321 111111112224556788999999 888888877788887765
No 21
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.98 E-value=1.2e-31 Score=266.18 Aligned_cols=335 Identities=13% Similarity=0.128 Sum_probs=228.7
Q ss_pred cCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc---
Q 013079 65 SATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC--- 138 (450)
Q Consensus 65 att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~--- 138 (450)
+++++.+. .+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+ .+++|+| |++|+.+++.+++
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~~ 84 (382)
T 4hvk_A 8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSG---ATEANNLAIIGYAMRN 84 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS---HHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECC---chHHHHHHHHHhhhhh
Confidence 33444444 4788888888888888888888878889999999999999975 5899999 9999999999887
Q ss_pred -cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079 139 -SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212 (450)
Q Consensus 139 -~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~ 212 (450)
++||+|+++.++|+++...+... .+ .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.
T Consensus 85 ~~~gd~vi~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~ 161 (382)
T 4hvk_A 85 ARKGKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEIS 161 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHH-HH-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHH
T ss_pred cCCCCEEEECCCCcHHHHHHHHHH-Hh-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECCCCCceeeCCHHHHH
Confidence 89999999999999998876433 22 58899998865 899999999 88999999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh---hhhccCCCc
Q 013079 213 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTM 287 (450)
Q Consensus 213 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~---~~~~~g~~~ 287 (450)
++|+++|+ +|+|++| +....+....++|+++.|+||++|++| + |+++.+++. .+.....+ .......+.
T Consensus 162 ~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 235 (382)
T 4hvk_A 162 EVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSE 235 (382)
T ss_dssp HHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCC
T ss_pred HHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc--e-EEEEEcCcc--CcCcccccCCCcCccccCCc
Confidence 99999999 9999998 333334444578999999999988777 4 666554432 11111000 000112222
Q ss_pred hH--HHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079 288 NP--KVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362 (450)
Q Consensus 288 ~~--~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 362 (450)
+. ..+. .++.. .+.+....+++.++++++.+.|++++. .+..+... +.+++++|.+++.
T Consensus 236 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 299 (382)
T 4hvk_A 236 NVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK----------------RLPNNVNVRFSYI 299 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS----------------BCTTEEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc----------------cCCCEEEEEECCC
Confidence 22 2221 12111 133455666778889999999987743 44433211 2345889988743
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHH
Q 013079 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKA 438 (450)
Q Consensus 363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~a 438 (450)
+ ...+.+.|... | +.++.|+.|+...... ......+|.+ ++.||||++ ...+++.++.+.++
T Consensus 300 ~-~~~~~~~l~~~---g-i~v~~g~~~~~~~~~~--------~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~ 365 (382)
T 4hvk_A 300 E-GESIVLSLDMA---G-IQASTGSACSSKTLQP--------SHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEV 365 (382)
T ss_dssp C-HHHHHHHHHHT---T-CBCBCC--------CC--------CHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHH
T ss_pred C-HHHHHHHHHHC---C-EEEeeCCccCCCCCcc--------hHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHH
Confidence 2 45677777643 3 6788887664322111 1222334443 588999999 75555555555554
Q ss_pred HHH
Q 013079 439 LSR 441 (450)
Q Consensus 439 l~~ 441 (450)
|.+
T Consensus 366 l~~ 368 (382)
T 4hvk_A 366 LPG 368 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 22
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=2.4e-30 Score=255.04 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=211.1
Q ss_pred CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
..+...++++.+|++++. +.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.+++
T Consensus 49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~ 120 (354)
T 3ly1_A 49 AKNEILMLGNKLAAHHQVEAPSILLTAG---SSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVK 120 (354)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEEC
T ss_pred CCCchHHHHHHHHHHhCCChHHEEEeCC---hHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEec
Confidence 456789999999999995 57999999 9999999999999999999999999999987775 3688999998
Q ss_pred CC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc-----c----
Q 013079 175 IS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A---- 236 (450)
Q Consensus 175 ~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~-----~---- 236 (450)
.+ |+++|++++ + +++++|++++|+||||.+.|++++.++++. +|+++|+|++|+.+.... .
T Consensus 121 ~~~~~~~d~~~l~~~l-~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 199 (354)
T 3ly1_A 121 MLDNWAFDIEGLKAAV-AAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMIT 199 (354)
T ss_dssp CCTTSCCCHHHHHHHH-HTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHH
T ss_pred CCCCCCCCHHHHHHHh-ccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhh
Confidence 77 999999999 6 789999999999999999998888888887 999999999996544321 1
Q ss_pred CC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079 237 RL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 315 (450)
Q Consensus 237 ~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 315 (450)
.. +.++++.|+||.+|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.+++++
T Consensus 200 ~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 275 (354)
T 3ly1_A 200 QGAENIILLKTFSKIHAMAGMRV-GYAVAHPTVIALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQI 275 (354)
T ss_dssp TTCSSEEEEEESSSTTCCGGGCC-EEEECCHHHHHHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeeChhhccChhhhh-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 22 67799999999999899998 9999999998888765541 2222333333333333334456667778889999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
+.+.|++++..+. | +.|.++++.++. ....+.+.|... | +.++ |+.+.
T Consensus 276 l~~~l~~~~~~~~-~-------------------~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~-g~~~~----- 323 (354)
T 3ly1_A 276 LLKALEDLKLPYL-P-------------------SEGNFVFHQLVV--PLKDYQTHMADA---G-VLIG-RAFPP----- 323 (354)
T ss_dssp HHHHHHHHTCCBC-C-------------------CCSSEEEEECSS--CHHHHHHHHHHT---T-EECC-CCCTT-----
T ss_pred HHHHHHHCCCeEC-C-------------------CCceEEEEECCC--CHHHHHHHHHHC---C-EEEe-ecCCC-----
Confidence 9999988765432 2 245688999985 245666666642 3 5555 53310
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.++.||||++ . ++.++.+.++|+++
T Consensus 324 ------------------~~~~iRis~~-~---~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 324 ------------------ADNWCRISLG-T---PQEMQWVADTMREF 348 (354)
T ss_dssp ------------------CTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEEcC-C---HHHHHHHHHHHHHH
Confidence 2578999999 3 33455555555544
No 23
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.97 E-value=3.2e-29 Score=251.08 Aligned_cols=312 Identities=14% Similarity=0.133 Sum_probs=226.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG 153 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~ 153 (450)
+++.+.+.. +.+....|.+.....+..+++++.+++++|.+.+++|+| |++|+.+++++++++||+|+++.|.|++
T Consensus 64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~g---gt~a~~~~~~~~~~~gd~V~~~~p~~~~ 139 (398)
T 3a2b_A 64 KAAQDALEK-YGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFST---GFQSNLGPLSCLMGRNDYILLDERDHAS 139 (398)
T ss_dssp HHHHHHHHH-HCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHSSCTTCEEEEETTCCHH
T ss_pred HHHHHHHHH-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHHhCCCCEEEECCccCHH
Confidence 555555433 222222344444456789999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
+...+. ..|.++..++..|+++|++++ ++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+
T Consensus 140 ~~~~~~-----~~g~~~~~v~~~d~~~l~~~l-~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~ 213 (398)
T 3a2b_A 140 IIDGSR-----LSFSKVIKYGHNNMEDLRAKL-SRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHS 213 (398)
T ss_dssp HHHHHH-----HSSSEEEEECTTCHHHHHHHH-HTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHH-----HcCCceEEeCCCCHHHHHHHH-HhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCc
Confidence 988775 368889999888999999998 44 79999999999999999999999999999999999999995
Q ss_pred CCCC-----CccCC-----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH-HHHHcc
Q 013079 230 PLVL-----SPARL-----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-FELSER 298 (450)
Q Consensus 230 ~~~~-----~~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~~~~~~ 298 (450)
.+.+ ...+. ++|++++|+||+++++| ||+++++++++.+............+.+.+.++ ..++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~ 289 (398)
T 3a2b_A 214 LGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEI 289 (398)
T ss_dssp TTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHH
Confidence 4322 11111 25999999999999765 899999999888876422121122334444322 233333
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079 299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 378 (450)
Q Consensus 299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~ 378 (450)
.+++....+++.++++++.+.|++++..+..| .|.++++.++.......+.+.|...
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~g~~~~~~~~~~~~~~~l~~~l~~~--- 346 (398)
T 3a2b_A 290 IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--------------------ESPILPIFIRSNEKTFWVTKMLQDD--- 346 (398)
T ss_dssp HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--------------------CSSEEEEECCCHHHHHHHHHHHHHT---
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--------------------CCCEEEEEcCCHHHHHHHHHHHHHC---
Confidence 33334566677889999999999876544322 2569999998654567787777652
Q ss_pred cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
| +.+..|+.+.. + ..++.||||++ ...+++.++.+.++|.++.+
T Consensus 347 g-i~v~~~~~~~~---~-----------------~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 347 G-VFVNPVVSPAV---P-----------------AEESLIRFSLM-ATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp T-EECEEECTTTS---C-----------------GGGCEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred C-cEEEeeCCCCC---C-----------------CCCceEEEEEe-CCCCHHHHHHHHHHHHHHHH
Confidence 3 56665543211 0 01478999999 75566666666666665543
No 24
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=1e-29 Score=251.51 Aligned_cols=279 Identities=16% Similarity=0.195 Sum_probs=209.3
Q ss_pred CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.++...++++.+|++++. +.+++|+| |++|+++++.+++++||+|+++.|.|+++...+. ..|.++.+++
T Consensus 65 ~~~~~~~lr~~la~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~ 136 (363)
T 3ffh_A 65 PDGWASSLRKEVADFYQLEEEELIFTAG---VDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIP 136 (363)
T ss_dssp ----CHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEE
T ss_pred CCcchHHHHHHHHHHhCCChhhEEEeCC---HHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEec
Confidence 345678999999999985 57999999 9999999999999999999999999999887775 3688888888
Q ss_pred CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC----Ccc----CCC
Q 013079 175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLG 239 (450)
Q Consensus 175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~----~~~----~~g 239 (450)
.+ |++++++++ ++++++|++++|+||||.+.|+++|.++++.+ |+++|+|++|+.+.. ... ..+
T Consensus 137 ~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 137 LLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK 215 (363)
T ss_dssp CCTTSCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred CCCCCCcCHHHHHHhc-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence 76 999999999 88999999999999999999999999999887 999999999964432 111 125
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 319 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 319 (450)
.++++.|+||.+|++|.|+ |+++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.
T Consensus 216 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 291 (363)
T 3ffh_A 216 NLIITRTFSKIYGLASARV-GYGIADKEIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAF 291 (363)
T ss_dssp TEEEEEESSSTTCCSSCCC-EEEEECHHHHHHHHHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhhcCchhce-eeeecCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999998 9998899999888765541 22333334444444443345666777788999999999
Q ss_pred HHh-CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079 320 MKK-LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 398 (450)
Q Consensus 320 L~~-~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~ 398 (450)
|++ .+..+. |. .|+++++.++. ....+.+.|... | +.++.|+.+
T Consensus 292 l~~~~g~~~~-~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~~g~~~--------- 336 (363)
T 3ffh_A 292 AKRFEKVKLY-PA-------------------NGNFVLIDLGI--EAGTIFSYLEKN---G-YITRSGAAL--------- 336 (363)
T ss_dssp HHHCTTCEEC-CC-------------------CSSEEEEECSS--CHHHHHHHHHHT---T-EECEETTTT---------
T ss_pred HhhCCCceEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHHC---C-eEEEeCccC---------
Confidence 998 455543 22 35688999974 245666666642 3 566655331
Q ss_pred cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+. ++.||||++ . ++.++.+.++|++
T Consensus 337 -------------~~-~~~iRis~~-~---~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 337 -------------GF-PTAVRITIG-K---EEDNSAVIALLEK 361 (363)
T ss_dssp -------------TC-TTEEEEECC-C---HHHHHHHHHHHHH
T ss_pred -------------CC-CCeEEEECC-C---HHHHHHHHHHHHH
Confidence 11 478999999 3 3344555555543
No 25
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=3.2e-30 Score=255.29 Aligned_cols=274 Identities=14% Similarity=0.198 Sum_probs=210.2
Q ss_pred HHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----
Q 013079 102 LNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---- 175 (450)
Q Consensus 102 ~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---- 175 (450)
.++++.||+++|. +.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.+++.
T Consensus 68 ~~lr~~la~~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~ 139 (365)
T 3get_A 68 IELKSTLAQKYKVQNENIIIGAG---SDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHN 139 (365)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCC
T ss_pred HHHHHHHHHHhCCCcceEEECCC---HHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCC
Confidence 6899999999994 57999999 9999999999999999999999999999988775 36888988886
Q ss_pred -CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH--hcCCEEEEeCCCCCCC--------CCccC----CCC
Q 013079 176 -SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTFSPLV--------LSPAR----LGA 240 (450)
Q Consensus 176 -~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~--~~gi~livD~~~~~~~--------~~~~~----~g~ 240 (450)
.|++++++++ ++++++|++++|+||||.+.|+++|.++++ ++|+++|+|++|..+. .+... .+.
T Consensus 140 ~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 3get_A 140 LDEFKKLYETH-KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDN 218 (365)
T ss_dssp HHHHHHHHHHT-TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTT
T ss_pred CCCHHHHHHHh-CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCC
Confidence 3688999999 789999999999999999999998888888 6799999999985332 12221 267
Q ss_pred eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 320 (450)
Q Consensus 241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 320 (450)
++++.|+||.+|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.|
T Consensus 219 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (365)
T 3get_A 219 VLYLGTFSKLYGLGGLRI-GYGIANANIISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFA 294 (365)
T ss_dssp EEEEEESSSTTSCTTTCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecchHhcCcchhe-EEEEcCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998 9998899999988776552 223334444444444443456667777889999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079 321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 400 (450)
Q Consensus 321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~ 400 (450)
++++..+. |. .|+++++.++.. ....+.+.|... | +.++.|+.+
T Consensus 295 ~~~g~~~~-~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~~~----------- 338 (365)
T 3get_A 295 KKHNIKII-DS-------------------YTNFITYFFDEK-NSTDLSEKLLKK---G-IIIRNLKSY----------- 338 (365)
T ss_dssp HHTTCEEC-CC-------------------SSSEEEEECSSS-CHHHHHHHHHTT---T-EECEECGGG-----------
T ss_pred HhCCCEEC-CC-------------------CCeEEEEECCCC-CHHHHHHHHHHC---C-EEEEECccC-----------
Confidence 98866543 22 356889999743 356777777653 3 566666432
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+ ++.||||++ . ++.++.+.++|.+
T Consensus 339 -----------~--~~~iRis~~-~---~~~i~~l~~~l~~ 362 (365)
T 3get_A 339 -----------G--LNAIRITIG-T---SYENEKFFTEFDK 362 (365)
T ss_dssp -----------T--CSEEEEECC-C---HHHHHHHHHHHHH
T ss_pred -----------C--CCEEEEEcC-C---HHHHHHHHHHHHH
Confidence 2 478999999 3 3344555555544
No 26
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=2.5e-30 Score=257.06 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=224.1
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----cCCCEEEE
Q 013079 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----SSGGHVVA 146 (450)
Q Consensus 73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~~gd~Vi~ 146 (450)
.+++.+.+...++||.+.|.+++...+...++++.+|+++|.+ .+++|+| |++|+++++.++. ++||+|++
T Consensus 18 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~vl~ 94 (384)
T 1eg5_A 18 LEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSC---ATESINWILKTVAETFEKRKRTIIT 94 (384)
T ss_dssp HHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESC---HHHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECC---HHHHHHHHHHhhhhhccCCCCEEEE
Confidence 3777777777778887666666655677899999999999965 7999999 9999999999987 78999999
Q ss_pred eCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC--
Q 013079 147 ARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-- 219 (450)
Q Consensus 147 ~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-- 219 (450)
+.++|+++...+..+ . ..|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|
T Consensus 95 ~~~~~~~~~~~~~~~-~-~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~ 171 (384)
T 1eg5_A 95 TPIEHKAVLETMKYL-S-MKGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKE 171 (384)
T ss_dssp CTTSCHHHHHHHHHH-H-HTTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTT
T ss_pred CCCCchHHHHHHHHH-H-hcCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCc
Confidence 999999987766321 1 258888888763 899999999 778999999999999999999999999999999
Q ss_pred CEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH--HHHHHHHhhhhhhccC--CCchHHHHH
Q 013079 220 VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSMMDLHQGALMLLG--PTMNPKVAF 293 (450)
Q Consensus 220 i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~~l~~~~~~~~~~~g--~~~~~~~a~ 293 (450)
+++|+|++|+ ....+...+++|+++.|+||++|++| + |+++.++++ ...+...........+ +.+.+.++.
T Consensus 172 ~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 248 (384)
T 1eg5_A 172 TLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAA 248 (384)
T ss_dssp CEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHH
T ss_pred eEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCccccccccCcccccccCCCCChHHHHHHH
Confidence 9999999973 22233334578999999999999877 5 899888765 2111110000000112 222222222
Q ss_pred HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079 294 ELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 372 (450)
Q Consensus 294 ~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l 372 (450)
.++.. .+.+....+++.++++++.+.|++.+.++..|... +.+.+++|.+++.+ ...+.+.|
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~l 311 (384)
T 1eg5_A 249 RAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI----------------SLPNTLSVSFPNIR-GSTLQNLL 311 (384)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS----------------BCTTEEEEECTTCC-HHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc----------------CCCCEEEEEeCCCC-HHHHHHHH
Confidence 33322 23456667778889999999998865555433200 23558888887432 45677777
Q ss_pred hccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 373 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 373 ~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.. .| +.+..|..|...... +......+|.+ .+.||||++ ...+++.++.+.++|.++
T Consensus 312 ~~---~g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 312 SG---YG-IYVSTSSACTSKDER--------LRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp HH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred hh---CC-eEEeccccccCCCCc--------chHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 54 33 677766554321100 01122334443 478999999 655555555555555443
No 27
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.2e-30 Score=262.05 Aligned_cols=322 Identities=16% Similarity=0.126 Sum_probs=229.1
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh---ccCCCEEEEe
Q 013079 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL---CSSGGHVVAA 147 (450)
Q Consensus 73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l---~~~gd~Vi~~ 147 (450)
.+++.+.+...++||++.|.|++...+..+++++.+|+++|.+ .+++|+| +++++++++.++ +++||+|+++
T Consensus 43 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~al~~~~~~l~~~~~~gd~vi~~ 119 (406)
T 3cai_A 43 ATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGAD---RAVLLSLLAEASSSRAGLGYEVIVS 119 (406)
T ss_dssp HHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESC---HHHHHHHHHHHTGGGGBTTCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCC---hHHHHHHHHHHHhhccCCCCEEEEc
Confidence 3777777766667777777777666788999999999999975 6899999 999999999887 7889999999
Q ss_pred CCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCE
Q 013079 148 RTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT 221 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~ 221 (450)
.++|+++...+..+..+ .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|++
T Consensus 120 ~~~~~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~ 197 (406)
T 3cai_A 120 RLDDEANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGAL 197 (406)
T ss_dssp TTSCGGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCE
T ss_pred CCccHHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCE
Confidence 99999877665432222 58888888875 889999999 78899999999999999999999999999999999
Q ss_pred EEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEE-EEEcCHHHHHHHHHHhhh------hhhccCCC-chHH-
Q 013079 222 VVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQG------ALMLLGPT-MNPK- 290 (450)
Q Consensus 222 livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~~~~~~~~~l~~~~~~------~~~~~g~~-~~~~- 290 (450)
+|+|++|+ ....+...+++|+++.|+||++| ++ + | +++.++++++.+...... .....+.. ....
T Consensus 198 li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~ 273 (406)
T 3cai_A 198 VVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--I-GAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLA 273 (406)
T ss_dssp EEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--C-EEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHH
T ss_pred EEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC--c-CeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHH
Confidence 99999993 22234344589999999999887 44 5 6 999998877665432210 00012221 1111
Q ss_pred HHHHHHccCC----------------cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 291 VAFELSERIP----------------HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 291 ~a~~~~~~~~----------------~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
++..++.... ++....++..++++++.+.|++++. .+..|.. ..++
T Consensus 274 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~~~~ 336 (406)
T 3cai_A 274 GVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPE-----------------AQIP 336 (406)
T ss_dssp HHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCS-----------------SBCS
T ss_pred HHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcc-----------------ccCC
Confidence 1111222111 2455566678889999999988743 4433320 2355
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHH
Q 013079 354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQR 431 (450)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~ 431 (450)
+++|.+++.+ ...+.+.|... | +.++.|+... ....+|.+ .+.||||++ ..++++.
T Consensus 337 ~~~~~~~~~~-~~~~~~~L~~~---g-i~v~~g~~~~----------------~~~~~g~~~~~~~iRis~~-~~~t~e~ 394 (406)
T 3cai_A 337 VVSFAVHKVP-ADRVVQRLADN---G-ILAIANTGSR----------------VLDVLGVNDVGGAVTVGLA-HYSTMAE 394 (406)
T ss_dssp EEEEEETTBC-HHHHHHHHHHT---T-EECEECCSCH----------------HHHHHTTTTTTCCEEEECC-TTCCHHH
T ss_pred EEEEEECCcC-HHHHHHHHHHC---C-cEEecCChHH----------------HHHHcCCCCCCCeEEEEee-cCCCHHH
Confidence 8999987422 45666666542 3 5666664110 11123332 478999999 8888888
Q ss_pred HHHHHHHHHHh
Q 013079 432 WSQFEKALSRM 442 (450)
Q Consensus 432 i~~l~~al~~~ 442 (450)
++.+.++|+++
T Consensus 395 i~~~~~~l~~~ 405 (406)
T 3cai_A 395 VDQLVRALASL 405 (406)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 28
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=2e-30 Score=261.78 Aligned_cols=327 Identities=17% Similarity=0.182 Sum_probs=227.2
Q ss_pred HHHHHhhc--CCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhcc----CCCEE
Q 013079 74 ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCS----SGGHV 144 (450)
Q Consensus 74 ~~~~~~~~--~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~----~gd~V 144 (450)
+++.+.+. ..++||.+ .|.+++...+..+++++.++++++.+ .+++|+| |++|+.++++++.+ +||+|
T Consensus 40 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gt~a~~~a~~~l~~~~~~~gd~V 116 (423)
T 3lvm_A 40 EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG---ATESDNLAIKGAANFYQKKGKHI 116 (423)
T ss_dssp HHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC---hHHHHHHHHHHHHHhhccCCCEE
Confidence 66666666 66788877 67777777788899999999999986 7999999 99999999998874 79999
Q ss_pred EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079 145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219 (450)
Q Consensus 145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g 219 (450)
+++.++|+++...+... .. .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|
T Consensus 117 l~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 193 (423)
T 3lvm_A 117 ITSKTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG 193 (423)
T ss_dssp EEETTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHT
T ss_pred EECCccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcC
Confidence 99999999988776433 22 58899998876 899999999 789999999999999999999999999999999
Q ss_pred CEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh----hhccCC-CchHHHH
Q 013079 220 VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGP-TMNPKVA 292 (450)
Q Consensus 220 i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~-~~~~~~a 292 (450)
+++|+|++|+ ....+....++|+++.|+||.+|++| + |+++.+++....+.....+. ....+. ......+
T Consensus 194 ~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (423)
T 3lvm_A 194 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG 270 (423)
T ss_dssp CEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHH
T ss_pred CEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccccCCcccccccCCCCCHHHHHH
Confidence 9999999983 23345556689999999999988777 5 88887766554433221100 001121 1222222
Q ss_pred H-HHHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013079 293 F-ELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM 369 (450)
Q Consensus 293 ~-~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~ 369 (450)
. .++... ..+....+++.++++++.+.|++++ ..+..+... ..+++++|.+++.. ...+.
T Consensus 271 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~l~ 333 (423)
T 3lvm_A 271 MGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH----------------GAPNILNVSFNYVE-GESLI 333 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT----------------BCTTEEEEEETTSC-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc----------------cCCCeEEEEeCCCC-HHHHH
Confidence 1 222211 2245566677888999999998874 355433211 23568888886433 45677
Q ss_pred HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+.|.. +.++.|..|+..... +......+|+. .+.||||++ ...+++.++.+.++|++
T Consensus 334 ~~l~~------i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~ 394 (423)
T 3lvm_A 334 MALKD------LAVSSGSACTSASLE--------PSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRK 394 (423)
T ss_dssp HHTTT------EECBCCCC-----CC--------CCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred HHHhh------heeccCccccCCCcc--------ccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHH
Confidence 76654 567777665432111 11223334544 488999999 75555555555444443
No 29
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.7e-29 Score=252.29 Aligned_cols=266 Identities=23% Similarity=0.288 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ | .+++++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++..
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~ 141 (385)
T 1b5p_A 70 IPELREALAEKFRRENGLSVTPEETIVTVG---GSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVE 141 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHEEEcCC---hHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEE
Confidence 456777777765 3 357999999 9999999999999999999999999999888775 36778877
Q ss_pred eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC
Q 013079 173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR 237 (450)
Q Consensus 173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~ 237 (450)
++.+ |+++|++++ ++++++|++++||||||.+.+ +++|+++|+++|+++|+|++|+.+.+ +...
T Consensus 142 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 220 (385)
T 1b5p_A 142 VETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR 220 (385)
T ss_dssp EECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG
T ss_pred eecCcccCCCCCHHHHHHhc-CCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHH
Confidence 7752 789999998 778999999999999999976 88999999999999999999965543 2223
Q ss_pred C--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc----CCcHHHHHHHHHH
Q 013079 238 L--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCH 311 (450)
Q Consensus 238 ~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~----~~~l~~~~~~~~~ 311 (450)
+ +.++++.|+||.+|++|+|+ ||++.++++++.+...+... ....+.+.+.++..++.. .+++....+++.+
T Consensus 221 ~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 298 (385)
T 1b5p_A 221 VAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298 (385)
T ss_dssp TCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 3 67899999999999999998 99999999988887655421 122333344444334422 3345556677788
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET 390 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s 390 (450)
+++.+.+.|++++..+..|. .|.++++.++. ......+.+.|.. .| +.+..|+.+
T Consensus 299 ~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~---~g-v~v~~g~~f- 354 (385)
T 1b5p_A 299 RRDLLLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLE---AG-VAVVPGTDF- 354 (385)
T ss_dssp HHHHHHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHH---TT-EECEESGGG-
T ss_pred HHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecCCCCCCHHHHHHHHHH---CC-eEEeccccc-
Confidence 89999999988755543332 34577778751 1124566666653 23 566656432
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079 391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g 423 (450)
+. ++.||||++
T Consensus 355 ---------------------~~-~~~iRis~~ 365 (385)
T 1b5p_A 355 ---------------------AA-FGHVRLSYA 365 (385)
T ss_dssp ---------------------TC-TTEEEEECC
T ss_pred ---------------------CC-CCeEEEEec
Confidence 11 468999999
No 30
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.97 E-value=1.6e-29 Score=252.25 Aligned_cols=294 Identities=15% Similarity=0.103 Sum_probs=211.9
Q ss_pred ccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 166 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~ 166 (450)
+.|+....+..+++++.+++.+| .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..
T Consensus 58 ~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~ 129 (391)
T 3dzz_A 58 FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASG---VVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GN 129 (391)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCC---HHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----Hc
Confidence 45665555667788888888776 467999999 9999999999999999999999999999988775 36
Q ss_pred CeeEEEeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013079 167 NITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVL-- 233 (450)
Q Consensus 167 g~~v~~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~-- 233 (450)
|.++.+++. .|+++|++++.++++++|++++|+||||.+ .++++|+++|+++|+++|+|++|+.+..
T Consensus 130 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 209 (391)
T 3dzz_A 130 GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTD 209 (391)
T ss_dssp TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS
T ss_pred CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCC
Confidence 788888776 489999999933789999999999999999 6789999999999999999999954432
Q ss_pred ----CccCCC---Ce--EEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcH
Q 013079 234 ----SPARLG---AD--VVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHL 302 (450)
Q Consensus 234 ----~~~~~g---~d--i~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l 302 (450)
+...++ .| +++.|+||.+|++|.|+ |+++.+ +++++.+...........++.+.+.++..++... +++
T Consensus 210 ~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 288 (391)
T 3dzz_A 210 EDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWL 288 (391)
T ss_dssp CCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHH
T ss_pred CCceehhhcCccccCcEEEEEeChhhccccchhh-eEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHH
Confidence 122222 34 99999999999899998 999887 8888888766442222344455555544444332 335
Q ss_pred HHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-ccccc
Q 013079 303 GLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQF 378 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~-~~~~~ 378 (450)
....+++.++++++.+.|++ + +..+..|. .+.++++.++.. .....+.+.|. ..
T Consensus 289 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 346 (391)
T 3dzz_A 289 RELKQVLRDNFAYAREFLAKEVPEVKVLDSN-------------------ASYLAWVDISALGMNAEDFCKYLREKT--- 346 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSEECCCC-------------------BSSEEEEECGGGCSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEeccC-------------------ceEEEEEehhhcCCCHHHHHHHHHHhC---
Confidence 56667778899999999988 5 44544332 345677888631 23556777763 32
Q ss_pred cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
| +.++.|+.+.. ..++.||||++ . +++.++.+.+.|.
T Consensus 347 g-i~v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~l~~l~ 383 (391)
T 3dzz_A 347 G-LIISAGNGYRG---------------------NGHEFVRINLA-C--PKELVIDGMQRLK 383 (391)
T ss_dssp C-EECEESGGGCT---------------------TGGGEEEEECC-S--CHHHHHHHHHHHH
T ss_pred C-EEEeCchhhCC---------------------CCCCEEEEEec-C--CHHHHHHHHHHHH
Confidence 3 56666654321 01478999999 5 2333444333333
No 31
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.97 E-value=3.8e-30 Score=255.75 Aligned_cols=338 Identities=12% Similarity=0.112 Sum_probs=226.9
Q ss_pred ccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----c
Q 013079 67 TFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----S 139 (450)
Q Consensus 67 t~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~ 139 (450)
+++.+. .+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+ .+++|+| |++|+++++.++. +
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~l~~~~~~ 86 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSG---ATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESS---HHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCc---hHHHHHHHHHHHHhhccC
Confidence 333344 3777777777678877666666556678899999999999975 6899999 9999999999987 8
Q ss_pred CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHH
Q 013079 140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 214 (450)
Q Consensus 140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~l 214 (450)
+||+|++++++|+++...+.. +.. .|.++++++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~-~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l 163 (382)
T 4eb5_A 87 KGKHILVSAVEHMSVINPAKF-LQK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEV 163 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHH-HTT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHH
T ss_pred CCCEEEECCCcchHHHHHHHH-HHh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEeccCCCccccCCHHHHHHH
Confidence 999999999999998877642 233 68899888863 899999999 7789999999999999999999999999
Q ss_pred HHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHH-hhhhhhccCCCc-hH
Q 013079 215 AHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDL-HQGALMLLGPTM-NP 289 (450)
Q Consensus 215 a~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~-~~~~~~~~g~~~-~~ 289 (450)
|+++|++ |+|++|+ ....+...+++|+++.|+||++|++| + |+++.+++. +...... ........+... ..
T Consensus 164 ~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T 4eb5_A 164 LAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEAKLQPVILGGGQENGLRSGSENVPS 239 (382)
T ss_dssp HTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred HHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEccccccCceecCCCccccccCCCccHHH
Confidence 9999999 9999984 22222223478999999999988766 5 777665542 1111000 000001122211 12
Q ss_pred HHH-HHHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079 290 KVA-FELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 366 (450)
Q Consensus 290 ~~a-~~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~ 366 (450)
..+ ..++.. .+.+....+++.++++++.+.|++++ ..+..|. . ...+++++|.+++. ...
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~-~~~ 302 (382)
T 4eb5_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP--E--------------KRLPNNVNVRFSYI-EGE 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS--S--------------SBCTTEEEEEETTS-CHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc--c--------------cCCCCEEEEEeCCc-CHH
Confidence 111 122221 12345566677888999999998864 3443221 0 01356889998742 245
Q ss_pred HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHH----HHHHHHHH
Q 013079 367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQ----RWSQFEKA 438 (450)
Q Consensus 367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~----~i~~l~~a 438 (450)
.+.+.|... | +.++.|..|+..... ++.....+|.+ ++.||||++ ...+++ +++.|.++
T Consensus 303 ~~~~~l~~~---g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 303 SIVLSLDMA---G-IQASTGSACSSKTLQ--------PSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp HHHHHHHHH---T-CBCBCCCGGGTSSCC--------CCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC---C-EEEeccccccCCCCc--------ccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 677776542 3 677777665432111 11233334543 579999999 654444 44555555
Q ss_pred HHHhhh
Q 013079 439 LSRMQD 444 (450)
Q Consensus 439 l~~~~~ 444 (450)
++++++
T Consensus 370 ~~~~~~ 375 (382)
T 4eb5_A 370 IERLRS 375 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 32
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=5.1e-30 Score=256.81 Aligned_cols=324 Identities=15% Similarity=0.208 Sum_probs=227.0
Q ss_pred HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----ccCCCEE
Q 013079 73 PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----CSSGGHV 144 (450)
Q Consensus 73 ~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~~~gd~V 144 (450)
.+++.+.+...++||.. .|.++....+...++++.||++++. +.+++|+| |++|+++++.++ +++||+|
T Consensus 40 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~v 116 (406)
T 1kmj_A 40 IDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRG---TTEGINLVANSWGNSNVRAGDNI 116 (406)
T ss_dssp HHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHTHHHHCCTTCEE
T ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCC---hhHHHHHHHHHhhhhcCCCCCEE
Confidence 36677777665566653 3455444567789999999999997 57899999 999999999998 8899999
Q ss_pred EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079 145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219 (450)
Q Consensus 145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g 219 (450)
+++.++|++....+...... .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|
T Consensus 117 l~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 194 (406)
T 1kmj_A 117 IISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPLAEMITLAHQHG 194 (406)
T ss_dssp EEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTT
T ss_pred EEecccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcC
Confidence 99999998865443222222 58888888764 789999999 788999999999999999999999999999999
Q ss_pred CEEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh-----------------
Q 013079 220 VTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----------------- 280 (450)
Q Consensus 220 i~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----------------- 280 (450)
+++|+|++|+.. ..+....++|+++.|+||.+|++| + |+++.++++++.+.....++.
T Consensus 195 ~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (406)
T 1kmj_A 195 AKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP 271 (406)
T ss_dssp CEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTT
T ss_pred CEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcccCCCceeecccccccccCCCc
Confidence 999999999432 223233479999999999998877 5 999999888877653322110
Q ss_pred --hccC-CCchHHHHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 281 --MLLG-PTMNPKVAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 281 --~~~g-~~~~~~~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
...+ +.+.+.++. .++..+. .+....+++.++++++.+.|++++ .++..|. +.|+
T Consensus 272 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~ 333 (406)
T 1kmj_A 272 WRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ------------------NRLG 333 (406)
T ss_dssp GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT------------------TCCS
T ss_pred hhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------------CcCC
Confidence 0112 222222222 1222221 344556667888899999998873 4554331 1356
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079 354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 433 (450)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 433 (450)
++.|.+++.+ ...+.+.|... | +.+..|..|+. ......|. ++.||||++ ..++++.++
T Consensus 334 ~~~~~~~~~~-~~~~~~~l~~~---g-i~v~~g~~~~~--------------~~~~~~g~-~~~iRis~~-~~~t~~~i~ 392 (406)
T 1kmj_A 334 VIAFNLGKHH-AYDVGSFLDNY---G-IAVRTGHHCAM--------------PLMAYYNV-PAMCRASLA-MYNTHEEVD 392 (406)
T ss_dssp EEEEEETTCC-HHHHHHHHHHT---T-EECEEECTTCH--------------HHHHHTTC-SCEEEEECC-TTCCHHHHH
T ss_pred EEEEEECCCC-HHHHHHHHhhC---C-cEEEeccccch--------------HHHHhcCC-CCeEEEEee-cCCCHHHHH
Confidence 8888887322 34566666542 3 56666654321 01111232 478999999 877777778
Q ss_pred HHHHHHHHhh
Q 013079 434 QFEKALSRMQ 443 (450)
Q Consensus 434 ~l~~al~~~~ 443 (450)
.+.++|.++.
T Consensus 393 ~~~~~l~~~~ 402 (406)
T 1kmj_A 393 RLVTGLQRIH 402 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777654
No 33
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=5.5e-30 Score=257.86 Aligned_cols=326 Identities=17% Similarity=0.186 Sum_probs=225.7
Q ss_pred HHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----ccCCCEEE
Q 013079 74 ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----CSSGGHVV 145 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~~~gd~Vi 145 (450)
+++.+.+....+||. +.+.|+....+..+++++.||++++. +.+++|+| |++|+++++.++ +++||+|+
T Consensus 46 ~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~Vl 122 (420)
T 1t3i_A 46 EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRN---ATEAINLVAYSWGMNNLKAGDEII 122 (420)
T ss_dssp HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHTHHHHCCTTCEEE
T ss_pred HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCC---hHHHHHHHHHHhhhcccCCCCEEE
Confidence 667666666556665 34667654456789999999999998 67999999 999999999998 88999999
Q ss_pred EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079 146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 220 (450)
Q Consensus 146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi 220 (450)
++.++|++....+..... ..|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 200 (420)
T 1t3i_A 123 TTVMEHHSNLVPWQMVAA-KTGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA 200 (420)
T ss_dssp EETTCCGGGTHHHHHHHH-HHCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC
T ss_pred ECcchhHHHHHHHHHHHH-hcCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCC
Confidence 999999995332221111 257888888763 899999999 7889999999999999999999999999999999
Q ss_pred EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh------------------
Q 013079 221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL------------------ 280 (450)
Q Consensus 221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------ 280 (450)
++|+|++|+.. ..+...+++|+++.|+||.+|++| + |+++.++++++.+.....++.
T Consensus 201 ~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 1t3i_A 201 KVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHK 277 (420)
T ss_dssp EEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGG
T ss_pred EEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCceecCCCccccccccccCCCCchhh
Confidence 99999998432 223344579999999999998877 5 999999888877654332110
Q ss_pred hccC-CCchHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079 281 MLLG-PTMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 355 (450)
Q Consensus 281 ~~~g-~~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 355 (450)
...+ +...+..+.. ++..+. .+....+++.++++++.+.|+++ +.++..|.... .+.|+++
T Consensus 278 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------------~~~~~~~ 343 (420)
T 1t3i_A 278 FEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------------GDRAALA 343 (420)
T ss_dssp GCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------------SCBCSEE
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc--------------cccCCEE
Confidence 0112 2222222221 222221 24556667788899999999987 44554442000 0246789
Q ss_pred EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079 356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 435 (450)
Q Consensus 356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 435 (450)
+|.+++. ....+.+.|... | +.+..|..|.. ......|. ++.||||++ ...+++.++.+
T Consensus 344 ~~~~~~~-~~~~~~~~l~~~---g-i~v~~~~~~~~--------------~~~~~~g~-~~~iRis~~-~~~~~~~i~~~ 402 (420)
T 1t3i_A 344 SFNVAGL-HASDVATMVDQD---G-IAIRSGHHCTQ--------------PLHRLFDA-SGSARASLY-FYNTKEEIDLF 402 (420)
T ss_dssp EEEETTB-CHHHHHHHHHTT---T-EECBCSCTTCH--------------HHHHHTTC-CCCEEEECC-TTCCHHHHHHH
T ss_pred EEEECCC-CHHHHHHHHHHC---C-eEEeeccccch--------------HHHHhcCC-CCeEEEecC-CCCCHHHHHHH
Confidence 9998742 245566666642 3 56666644321 00111222 578999999 76666666666
Q ss_pred HHHHHHh
Q 013079 436 EKALSRM 442 (450)
Q Consensus 436 ~~al~~~ 442 (450)
.++|.++
T Consensus 403 ~~~l~~~ 409 (420)
T 1t3i_A 403 LQSLQAT 409 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 34
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=2.4e-29 Score=248.79 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=209.2
Q ss_pred CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
..+...+++++||+++| .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.+++
T Consensus 63 ~~~~~~~lr~~la~~~g~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~ 134 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGFDPSWIIMANG---SDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFG 134 (360)
T ss_dssp CCSSCHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEEC
T ss_pred CCCchHHHHHHHHHHhCcCcceEEEcCC---HHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEee
Confidence 33445799999999998 467999999 9999999999999999999999999999987775 3688888887
Q ss_pred CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-cc----CCCCeEEEeCCCC
Q 013079 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-PA----RLGADVVVHSISK 249 (450)
Q Consensus 175 ~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~~----~~g~di~~~S~sK 249 (450)
.++...+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... +. ..+.++++.|+||
T Consensus 135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK 214 (360)
T 3hdo_A 135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK 214 (360)
T ss_dssp BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence 653212222221135779999999999999999999999999999999999999654321 11 2267799999999
Q ss_pred ccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013079 250 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 329 (450)
Q Consensus 250 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 329 (450)
.+|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++.++.+++.++++++.+.|++++..+.
T Consensus 215 ~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 289 (360)
T 3hdo_A 215 SYSLAGMRI-GLAIARPEVIAALDKIRDH---YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI- 289 (360)
T ss_dssp TTSCTTSCC-EEEECCHHHHHHHHHHSCS---CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-
T ss_pred hhcCCccce-eeEeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-
Confidence 999999998 9999999999988776541 22333344444444444344666777788999999999998866543
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHH
Q 013079 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409 (450)
Q Consensus 330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~ 409 (450)
+. .|+++++.+++.+ ...+.+.|... | +.++.|+. +
T Consensus 290 ~~-------------------~~~~~~~~~~~~~-~~~l~~~l~~~---g-i~v~~~~~------~-------------- 325 (360)
T 3hdo_A 290 PS-------------------QGNYLFATPPDRD-GKRVYDGLYAR---K-VLVRHFSD------P-------------- 325 (360)
T ss_dssp CC-------------------SSSEEEEECTTCC-HHHHHHHHHHT---T-EECBCCCS------T--------------
T ss_pred CC-------------------CccEEEEECCCCC-HHHHHHHHHHC---C-EEEEECCC------C--------------
Confidence 22 4568888887432 45666776642 3 45554422 0
Q ss_pred hcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 410 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 410 ~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
..++.||||++ +++.++.|.++|.++.+
T Consensus 326 ---~~~~~iRis~~----~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 326 ---LLAHGMRISIG----TREEMEQTLAALKEIGE 353 (360)
T ss_dssp ---TTTTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred ---CCCCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence 01478999999 35567777778777653
No 35
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=1.2e-28 Score=246.42 Aligned_cols=311 Identities=14% Similarity=0.180 Sum_probs=225.8
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG 153 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~ 153 (450)
+++.+.+.. ++++...+.|.....+..+++++.+|+++|.+..+++++ |++|+..++.+++++||+|+++.|.|++
T Consensus 64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~a~~~~l~~~~~~gd~v~~~~~~~~~ 139 (399)
T 3tqx_A 64 KTAQTVVEQ-YGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSS---CFDANGGLFETLLGPEDAIISDELNHAS 139 (399)
T ss_dssp HHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHTTHHHHCCTTCEEEEETTCCHH
T ss_pred HHHHHHHHH-hCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECc---hHHHHHHHHHHhcCCCCEEEECCcccHH
Confidence 555555543 344334444544456789999999999999998899999 9999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079 154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~ 227 (450)
+...+. ..|.++..++..|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++
T Consensus 140 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~ 213 (399)
T 3tqx_A 140 IIDGIR-----LCKAQRYRYKNNAMGDLEAKL-KEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDS 213 (399)
T ss_dssp HHHHHH-----SCCSEEEEECTTCTTHHHHHH-HHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHH-----HcCCceeEeCCCCHHHHHHHH-HhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 988775 468899999888899999888 43 899999999999999999999999999999999999999
Q ss_pred CC-CC-CCC------ccCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH---HH
Q 013079 228 FS-PL-VLS------PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FE 294 (450)
Q Consensus 228 ~~-~~-~~~------~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~ 294 (450)
|+ .+ ... ...+ ++|+++.|+||++++ .+ |||++.++++++.+........ . .++.++..+ ..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g--~~-gG~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 288 (399)
T 3tqx_A 214 HAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGG--AS-GGYTSGHKEIIEWLRNRSRPYL-F-SNTVAPVIVATSLK 288 (399)
T ss_dssp TTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS--SC-CEEEEECHHHHHHHHHHCHHHH-S-SCCCCHHHHHHHHH
T ss_pred ccccccCCCCCchHHhhCCCCCCcEEEecchHhccc--Cc-eEEEEcCHHHHHHHHHhCccee-c-cCCCcHHHHHHHHH
Confidence 93 33 211 0111 579999999999992 23 4999999999988876543221 1 222333222 22
Q ss_pred HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013079 295 LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 373 (450)
Q Consensus 295 ~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~ 373 (450)
.+... ++.....+++.++++++.+.|++++..+. + ..|+++++.++.......+.+.|.
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~l~ 348 (399)
T 3tqx_A 289 VLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-P-------------------GNHPIIPVMLGDAQLATNMADHLL 348 (399)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-C-------------------CSSSEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-C-------------------CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 22222 34566677788999999999998765443 2 246689999987656778888877
Q ss_pred ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 374 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 374 ~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
.. | +.+..+.. +. ....++.||||++ ...+++.++.+.++|.++.+
T Consensus 349 ~~---g-i~v~~~~~------~~--------------~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 349 QE---G-IYVVGFSY------PV--------------VPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp HT---T-EECCEECT------TT--------------SCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HC---C-CEEeeeCC------CC--------------CCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 52 3 44443211 00 0112468999999 76666777777666666543
No 36
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=7.1e-29 Score=245.25 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=203.8
Q ss_pred CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
..+...++++.||++++. +.+++|+| +++++++++++++++| |+|+++.|+|+++...+. ..|.++..+
T Consensus 56 ~~~~~~~lr~~la~~~~~~~~~v~~~~G---~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v 127 (356)
T 1fg7_A 56 PECQPKAVIENYAQYAGVKPEQVLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTV 127 (356)
T ss_dssp CCSSCHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEEC
T ss_pred CCccHHHHHHHHHHHhCCChHHEEEcCC---HHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEe
Confidence 334468899999999986 46899999 9999999999999999 999999999999988775 257788887
Q ss_pred CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH---HHHHHHhcCCEEEEeCCCCCCC--CCcc----CCC
Q 013079 174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE---LSRLAHDKGVTVVVDNTFSPLV--LSPA----RLG 239 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~---I~~la~~~gi~livD~~~~~~~--~~~~----~~g 239 (450)
+.+ |++++++++ + ++++|++++||||||.+.|.++ |+++|+ +|+++|+|++|..+. .+.. ..+
T Consensus 128 ~~~~~~~~d~~~l~~~i-~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~ 204 (356)
T 1fg7_A 128 PTLDNWQLDLQGISDKL-D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYP 204 (356)
T ss_dssp CCCTTSCCCHHHHHTSC-T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCT
T ss_pred eCCCCCCCCHHHHHHHh-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCC
Confidence 753 789999988 6 8999999999999999988554 455566 899999999995443 1222 236
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCc--HHHHHHHHHHHHHHHH
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFA 317 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~~~~~~~~~~~l~ 317 (450)
.++++.|+||++|++|+|+ ||++.++++++.+...+.. ...+.+.+.++..++..... +....+++.++++++.
T Consensus 205 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 280 (356)
T 1fg7_A 205 HLAILRTLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLI 280 (356)
T ss_dssp TEEEEEESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchHhhcCchhhh-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998 9999999999888766542 22333333333333322122 5556667788899999
Q ss_pred HHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-cccccccccc
Q 013079 318 RRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCS 395 (450)
Q Consensus 318 ~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~ 395 (450)
+.|++++. ....|. .|.++++.+++ ...+.+.|.. .| +.+.. |+.+
T Consensus 281 ~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~l~~~L~~---~g-I~v~~~g~~~------ 328 (356)
T 1fg7_A 281 AALKEIPCVEQVFDS-------------------ETNYILARFKA---SSAVFKSLWD---QG-IILRDQNKQP------ 328 (356)
T ss_dssp HHHHHSTTEEEECCC-------------------SSSEEEEEETT---HHHHHHHHHH---TT-EECEECTTST------
T ss_pred HHHHhCCCceEECCC-------------------CCeEEEEECCC---HHHHHHHHHH---CC-EEEEECCCCC------
Confidence 99998863 222332 46688999972 4567777754 33 45554 4332
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+. ++.+|||++ . ++.++.+.++|+++
T Consensus 329 ----------------~~-~~~iRis~~-~---~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 329 ----------------SL-SGCLRITVG-T---REESQRVIDALRAE 354 (356)
T ss_dssp ----------------TC-TTEEEEECC-C---HHHHHHHHHHHHTC
T ss_pred ----------------CC-CCeEEEEeC-C---HHHHHHHHHHHHhh
Confidence 11 368999999 4 45677777777654
No 37
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=3.6e-29 Score=248.60 Aligned_cols=286 Identities=19% Similarity=0.191 Sum_probs=203.1
Q ss_pred ChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 98 NPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.+...++++.+|++++ .+.+++|+| |++|+.+++.+++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~ 133 (375)
T 3op7_A 62 IEGSPAFKKSVSQLYTGVKPEQILQTNG---ATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQ 133 (375)
T ss_dssp TTCCHHHHHHHHTTSSSCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEE
T ss_pred CCChHHHHHHHHHHhccCChhhEEEcCC---hHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEe
Confidence 3446789999999863 477999999 9999999999999999999999999999887765 2577777776
Q ss_pred CC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----CCC
Q 013079 175 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLG 239 (450)
Q Consensus 175 ~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----~~g 239 (450)
.+ |+++|++++ ++++++|++++|+||||.+.| +++|.++|+++|+++|+|++|..+...+. ..+
T Consensus 134 ~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~ 212 (375)
T 3op7_A 134 IEEENGWLPDLEKLRQLI-RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYD 212 (375)
T ss_dssp EEGGGTTEECHHHHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCT
T ss_pred ccccCCCCCCHHHHHHhh-ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcC
Confidence 43 899999999 789999999999999999999 99999999999999999999965544311 125
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC-cHHHHHHHHHHHHHHHHH
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFAR 318 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~l~~ 318 (450)
.++++.|+||.++++|.|+ ||++.++++++.+...+... ...++.+.+.++..++...+ .+....+++.++++.+.+
T Consensus 213 ~~i~~~s~sK~~~~~G~r~-G~v~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 290 (375)
T 3op7_A 213 KGIAVNSLSKTYSLPGIRI-GWVAANHQVTDILRDYRDYT-MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQ 290 (375)
T ss_dssp TEEEEEESSSSSSCGGGCC-EEEECCHHHHHHHTTTGGGT-TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeEChhhcCCcccce-EEEEeCHHHHHHHHHHHhhh-ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999899998 99999999998887655421 12223333333333333222 233344455788889999
Q ss_pred HHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hccccccccccccccccccccccc
Q 013079 319 RMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSG 396 (450)
Q Consensus 319 ~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~ 396 (450)
.|++++. .+..|. .|.++++.++.......+...+ .. .| +.+..|+.+.
T Consensus 291 ~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ll~~---~g-i~v~~g~~~~------ 341 (375)
T 3op7_A 291 WIEEEPLVSYIRPA-------------------VVSTSFVKIAVDMPMEDFCLQLLQE---HG-VLLVPGNRFE------ 341 (375)
T ss_dssp HHHHCTTEEECCCS-------------------SSSCEEEEECCSSCHHHHHHHHHHH---HC-EECEEGGGGT------
T ss_pred HHhhCCCceEecCC-------------------CeEEEeEEcCCCCCHHHHHHHHHHh---CC-EEEeChhhhC------
Confidence 9988654 433332 3446667776322245565555 33 23 4555443321
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCC--HHHHHHHHHHHHHH
Q 013079 397 SSTSSELNAEEKALAGISAGLVRMSVGYLGT--LDQRWSQFEKALSR 441 (450)
Q Consensus 397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~--~~~~i~~l~~al~~ 441 (450)
. ++.+|||++ ..+ +++.++.|.+++.+
T Consensus 342 ----------------~-~~~iRi~~~-~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 342 ----------------R-DGYVRLGFA-CEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp ----------------C-TTEEEECCC-SCHHHHHHHHHHHHHHHGG
T ss_pred ----------------C-CCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 1 478999999 643 33334444444443
No 38
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=1.9e-28 Score=244.27 Aligned_cols=310 Identities=12% Similarity=0.099 Sum_probs=223.1
Q ss_pred HHHHHhhcC-CCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCch
Q 013079 74 ETMRRMFAG-ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152 (450)
Q Consensus 74 ~~~~~~~~~-~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~ 152 (450)
+++.+.+.. ..+++.+.|.|+ ..+...++++.||+++|.+..+++++ |++|+.+++.+++++||.|+++.+.|+
T Consensus 60 ~a~~~~~~~~~~~~~~~~~~~g--~~~~~~~l~~~la~~~g~~~~i~~~s---Gt~a~~~~~~~~~~~gd~v~~~~~~~~ 134 (384)
T 1bs0_A 60 RAWQQGAEQFGIGSGGSGHVSG--YSVVHQALEEELAEWLGYSRALLFIS---GFAANQAVIAAMMAKEDRIAADRLSHA 134 (384)
T ss_dssp HHHHHHHHHHCSCCCSBTTTTC--CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTCCH
T ss_pred HHHHHHHHHhCCCCCCcCcccC--ChHHHHHHHHHHHHHhCCCcEEEeCC---cHHHHHHHHHHhCCCCcEEEEcccccH
Confidence 555555543 122222223333 45788999999999999988999999 999999999999999999999999999
Q ss_pred hHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
.+...+. ..|.++..++..|+++|++++.+. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.
T Consensus 135 ~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~ 209 (384)
T 1bs0_A 135 SLLEAAS-----LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGT 209 (384)
T ss_dssp HHHHHHH-----TSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred HHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCccc
Confidence 9888775 368899999988999999988332 388999999999999999999999999999999999999943
Q ss_pred CCCC------c--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhcc-CCCchHHHHHHHHccCC-
Q 013079 231 LVLS------P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL-GPTMNPKVAFELSERIP- 300 (450)
Q Consensus 231 ~~~~------~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~~~- 300 (450)
..+. + ...+.|++++|+||+++++| |++++++++++.+........... .+.+.+.++..++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 210 GVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRS 285 (384)
T ss_dssp TTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS
T ss_pred ceecCCCCchHHhcCCCCcEEEeeccchhhccC----cEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhc
Confidence 2211 1 12357999999999999654 999999988888765432121111 22222222222333333
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079 301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 379 (450)
Q Consensus 301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g 379 (450)
+.....+++.++++++.+.|++++.++. |. .|+++++.++.......+.+.|... |
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~---g 342 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDLPFTLA-DS-------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G 342 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SC-------------------CSSBCCEEEESHHHHHHHHHHHHHT---T
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCccc-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C
Confidence 3455667788899999999988765543 21 3567888887544567788777652 3
Q ss_pred ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+.+..|+... . ...++.||||++ ...+++.++.+.++|.++
T Consensus 343 -i~v~~~~~~~------~--------------~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 343 -CWVTAIRPPT------V--------------PAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -EECCEECTTS------S--------------CTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred -cEEEeecCCC------C--------------CCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 5555443210 0 012478999999 877788888888887654
No 39
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=1.1e-28 Score=247.45 Aligned_cols=312 Identities=13% Similarity=0.120 Sum_probs=223.0
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG 153 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~ 153 (450)
+++.+.+.. ++++.+.+.|.....+...++++.||+++|.+..+++++ |++|+..++++++++||.|+++.+.|++
T Consensus 66 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~s---Gs~a~~~~~~~~~~~gd~v~~~~~~~~~ 141 (401)
T 1fc4_A 66 AAAKAGMDS-HGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSS---CFDANGGLFETLLGAEDAIISDALNHAS 141 (401)
T ss_dssp HHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHTTHHHHCCTTCEEEEETTCCHH
T ss_pred HHHHHHHHH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCC---hHHHHHHHHHHHcCCCCEEEEcchhHHH
Confidence 555555432 333333344544346788999999999999988889999 9999999999999999999999999998
Q ss_pred HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079 154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~ 227 (450)
+...+. ..|.++..++..|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++
T Consensus 142 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~ 215 (401)
T 1fc4_A 142 IIDGVR-----LCKAKRYRYANNDMQELEARL-KEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDS 215 (401)
T ss_dssp HHHHHH-----TSCSEEEEECTTCHHHHHHHH-HHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECT
T ss_pred HHHHHH-----HcCCceEEECCCCHHHHHHHH-HHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECc
Confidence 877654 368899999888999999988 43 799999999999999999999999999999999999999
Q ss_pred C-CCCCCC-c------cC--CCCeEEEeCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhhh-hccCCCchHHHHHHH
Q 013079 228 F-SPLVLS-P------AR--LGADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGAL-MLLGPTMNPKVAFEL 295 (450)
Q Consensus 228 ~-~~~~~~-~------~~--~g~di~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~-~~~g~~~~~~~a~~~ 295 (450)
| .++... . .. .++|+++.|+||++ ++. ||++++++++++.+........ ....+.+.+.++..+
T Consensus 216 ~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~----gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 291 (401)
T 1fc4_A 216 HAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS----GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKV 291 (401)
T ss_dssp TTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS----CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHH
T ss_pred ccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC----CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHH
Confidence 9 365421 0 11 25799999999999 544 3999999999888876543111 111222222222222
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079 296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY 375 (450)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~ 375 (450)
+..........+++.++++++.+.|++++.++. | +.|+++++.+++......+.+.|...
T Consensus 292 l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~ 351 (401)
T 1fc4_A 292 LEMVEAGSELRDRLWANARQFREQMSAAGFTLA-G-------------------ADHAIIPVMLGDAVVAQKFARELQKE 351 (401)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBC-C-------------------SSSSEEEEEEECHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccc-C-------------------CCCCEEEEEcCChHHHHHHHHHHHHC
Confidence 222222345667778899999999998765443 3 24679999998654567787777652
Q ss_pred ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
| +.+..|..+.. ....+.+|||++ ...+++.++.+.++|.++.+
T Consensus 352 ---g-i~v~~~~~~~~--------------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 395 (401)
T 1fc4_A 352 ---G-IYVTGFFYPVV--------------------PKGQARIRTQMS-AAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp ---T-EECCEECTTSS--------------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred ---C-cEEeeecCCCC--------------------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 3 55555533210 011468999999 76666666666666665533
No 40
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2.5e-29 Score=251.77 Aligned_cols=280 Identities=15% Similarity=0.189 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
..++++.+|+++ | .+.+++|+| |++|+++++++++++| |+|+++.|.|+++...+. ..|.++.
T Consensus 78 ~~~lr~~la~~l~~~~g~~~~~~~i~~~~g---~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~ 149 (398)
T 3ele_A 78 DVETRAAIAEFLNNTHGTHFNADNLYMTMG---AAASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLV 149 (398)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCChHHEEEccC---HHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence 345666666654 3 467999999 9999999999999999 999999999999988775 3688888
Q ss_pred EeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc-
Q 013079 172 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP- 235 (450)
Q Consensus 172 ~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~- 235 (450)
.++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+.+.+..
T Consensus 150 ~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~ 228 (398)
T 3ele_A 150 EVPADTEHFQIDFDALEERI-NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI 228 (398)
T ss_dssp EECCCTTTSSCCHHHHHHTC-CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC
T ss_pred EEecCCcCCcCCHHHHHHHh-CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC
Confidence 88765 899999999 788999999999999999988 6777899998 999999999996544321
Q ss_pred ------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHH------HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH
Q 013079 236 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLV------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 236 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
...+.++++.|+||.+|++|.|+ ||++.+++++ ..+...... ......+......+...++...
T Consensus 229 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~ 304 (398)
T 3ele_A 229 KVPFVTKYYDNTLVCYSYSKSLSLPGERI-GYVLVPDEVYDKAELYAAVCGAGRA---LGYVCAPSLFQKMIVKCQGATG 304 (398)
T ss_dssp CCCCGGGTCSSEEEEEESTTTSSCTTTCC-EEEECCTTSTTHHHHHHHHHHHHHH---TTCCCSCHHHHHHHTTCTTCCC
T ss_pred CcCChHhhcCCeEEEEehhhcCCCcccee-EEEEEcchhhhHHHHHHHHHHHhhh---ccccCCCHHHHHHHHHHhcCHH
Confidence 12367899999999999999998 9998887643 333322221 1111222222222222222211
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
..+++.++++++.+.|++++..+..|. .|.++++.++..+ ...+.+.|.. .| +.+
T Consensus 305 -~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~l~~---~g-i~v 359 (398)
T 3ele_A 305 -DINAYKENRDLLYEGLTRIGYHCFKPD-------------------GAFYMFVKALEDD-SNAFCEKAKE---ED-VLI 359 (398)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECSSSC-HHHHHHHHHT---TT-EEC
T ss_pred -HHHHHHHHHHHHHHHHHHcCCeecCCC-------------------eeEEEEEEcCCCC-HHHHHHHHHH---CC-EEE
Confidence 345677888899999988776655442 3456899987432 5567777764 33 566
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 442 (450)
..|+.+.. ++.||||++ . +++++.++.|.++++++
T Consensus 360 ~~g~~~~~-----------------------~~~iRis~~-~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 360 VAADGFGC-----------------------PGWVRISYC-VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp EESGGGTC-----------------------TTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred eCccccCC-----------------------CCeEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 66644311 478999999 5 23344444555554443
No 41
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=6.3e-31 Score=263.38 Aligned_cols=329 Identities=14% Similarity=0.107 Sum_probs=218.5
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----cCCC-EEE
Q 013079 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----SSGG-HVV 145 (450)
Q Consensus 73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~~gd-~Vi 145 (450)
.+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+ .+++|+| |++|+++++.+++ ++|| +|+
T Consensus 37 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---~t~al~~~~~~l~~~~~~~gd~~Vl 113 (400)
T 3vax_A 37 ADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG---ATESNNIALLGLAPYGERTGRRHII 113 (400)
T ss_dssp HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC---HHHHHHHHHHTTHHHHHHHTCCEEE
T ss_pred HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC---HHHHHHHHHHHHHHhhccCCCCEEE
Confidence 3777777766678887777778777788999999999999975 6999999 9999999999987 8899 999
Q ss_pred EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079 146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 220 (450)
Q Consensus 146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi 220 (450)
++.++|+++...+..+ .+ .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~ 190 (400)
T 3vax_A 114 TSAIEHKAVLEPLEHL-AG-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMHVNNETGVIQPVAELAQQLRATPT 190 (400)
T ss_dssp EETTSCHHHHHHHHHH-HT-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSC
T ss_pred ECccccHhHHHHHHHH-Hh-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEECCCCCceeeCcHHHHHHHHHhcCC
Confidence 9999999988777543 23 68899998875 899999999 7899999999999999999999999999999999
Q ss_pred EEEEeCCCCC--CCCCccCCCCeEEEeCCCCccccCccceEEEEE-cCH-HHH---HHHHHHhhh---hhhccCCCchHH
Q 013079 221 TVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---NSMMDLHQG---ALMLLGPTMNPK 290 (450)
Q Consensus 221 ~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~-~~~-~~~---~~l~~~~~~---~~~~~g~~~~~~ 290 (450)
++|+|++|+. ...+.... +|+++.|+||.+|+.| + |+++ .++ .+. ..+.....+ .......+.+..
T Consensus 191 ~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (400)
T 3vax_A 191 YLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVP 266 (400)
T ss_dssp EEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHH
T ss_pred EEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhccccccccCceecCCCceeeeecCCCCHH
Confidence 9999999832 22233334 8999999999888766 4 6666 544 111 111111100 000112222222
Q ss_pred --HHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079 291 --VAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 365 (450)
Q Consensus 291 --~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 365 (450)
.+. .++.. .+.+.+..+++.++++++.+.|+ .+ ..+..|.. ...+++++|.+++.+ .
T Consensus 267 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~ 328 (400)
T 3vax_A 267 LIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQD----------------HVVPHILNLSFEDVD-A 328 (400)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTT----------------SBCTTEEEEECTTCC-H
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcc----------------cCCCCEEEEEeCCCC-H
Confidence 211 12211 12455666777888899999998 43 35443321 024568999887432 4
Q ss_pred HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013079 366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV-GYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~-g~~~~~~~~i~~l~~al~ 440 (450)
..+.+.|. .+ +.++.|+.|+.....+ ......+|++ ++.||||+ | ...+++.++.+.++|.
T Consensus 329 ~~l~~~L~-~g----i~v~~g~~~~~~~~~~--------~~~~~~~g~~~~~~~~~iRls~~~-~~~t~e~i~~~~~~l~ 394 (400)
T 3vax_A 329 EAFLVTLK-DL----VAVATGSASTSASFTP--------SHVLRAMGLPEEAASKSLRFSWTP-GQATDLDVEELARGVA 394 (400)
T ss_dssp HHHHHHHH-HH----HHHTTTTEEEEEEECC--------HHHHHTTTCCHHHHTSEEEEEEEE-C---------------
T ss_pred HHHHHHHh-cC----cEEEecccccCCCCCc--------cHHHHHcCCCccccCceEEEEccC-CCCCHHHHHHHHHHHH
Confidence 56667666 54 7888887765432221 2223334554 48999999 8 7777777777777776
Q ss_pred Hhh
Q 013079 441 RMQ 443 (450)
Q Consensus 441 ~~~ 443 (450)
++.
T Consensus 395 ~~~ 397 (400)
T 3vax_A 395 KLK 397 (400)
T ss_dssp ---
T ss_pred HHh
Confidence 653
No 42
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=2.6e-29 Score=248.93 Aligned_cols=280 Identities=16% Similarity=0.180 Sum_probs=209.5
Q ss_pred CChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 97 FNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
..+...++++.+|+++|. +.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.++
T Consensus 65 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v 136 (367)
T 3euc_A 65 PVPSSEALRAKLKEVMQVPAGMEVLLGNG---SDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGV 136 (367)
T ss_dssp CCCCHHHHHHHHHHHHTCCTTCEEEEEEH---HHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCC---HHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEe
Confidence 345678999999999998 67999999 9999999999999999999999999999887765 368888888
Q ss_pred CCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCCc-----cC
Q 013079 174 DIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP-----AR 237 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~~-----~~ 237 (450)
+.+ |+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|+.+.... ..
T Consensus 137 ~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 215 (367)
T 3euc_A 137 PLRADFTLDRGAMLAAM-AEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTD 215 (367)
T ss_dssp ECCTTSCCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGT
T ss_pred cCCCCCCCCHHHHHHHh-hccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhh
Confidence 754 899999999 65 8999999999999999964 77888889999 99999999996553221 12
Q ss_pred CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079 238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 317 (450)
Q Consensus 238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 317 (450)
.+.++++.|+||. +++|.++ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.
T Consensus 216 ~~~~i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 290 (367)
T 3euc_A 216 FGNLLVMRTVSKL-GLAGIRL-GYVAGDPQWLEQLDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVA 290 (367)
T ss_dssp CTTEEEEEECCCT-TSCSCCE-EEEEECHHHHHHHGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecchhh-cccccCc-eeeeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999 8899998 9999999888887654431 223334444444444443345667777889999999
Q ss_pred HHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079 318 RRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 396 (450)
Q Consensus 318 ~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~ 396 (450)
+.|+++ +..+ .|. .|.++++.+++ ...+.+.|... | +.++.|+.+.
T Consensus 291 ~~l~~~~g~~~-~~~-------------------~~~~~~~~~~~---~~~l~~~l~~~---g-i~v~~~~~~~------ 337 (367)
T 3euc_A 291 EGMAAHGGVTV-FPS-------------------AANFLLARVPD---AAQTFDRLLAR---K-VLIKNVSKMH------ 337 (367)
T ss_dssp HHHHTSTTCEE-CCC-------------------SSSEEEEECSC---HHHHHHHHHTT---T-EECEECGGGC------
T ss_pred HHHHhCCCcEE-CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-eEEEECCccC------
Confidence 999887 4453 332 45688899872 45677777643 3 5666664431
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+..++.||||++ . ++.++.+.++|+++
T Consensus 338 ---------------~~~~~~iRis~~-~---~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 338 ---------------PLLANCLRVTVS-T---PEENAQFLEAFAAS 364 (367)
T ss_dssp ---------------GGGTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEecC-C---HHHHHHHHHHHHHH
Confidence 012578999999 3 33445555555543
No 43
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.97 E-value=6.1e-29 Score=249.45 Aligned_cols=288 Identities=17% Similarity=0.143 Sum_probs=207.7
Q ss_pred CCChhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079 96 HFNPTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 170 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v 170 (450)
...+..+++++.+++++|. +.+++|+| |++|+++++.+++++||+|+++.|.|+++...+. ..|.++
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~ 150 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPG---TQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEM 150 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---cHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEE
Confidence 3456778889999998886 68999999 9999999999999999999999999999888775 367777
Q ss_pred EEeCC-------C----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013079 171 TFVDI-------S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-- 234 (450)
Q Consensus 171 ~~v~~-------~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-- 234 (450)
..++. + |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~ 229 (407)
T 3nra_A 151 VPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA 229 (407)
T ss_dssp EEEEBCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC
T ss_pred EEeecccccccCcCCCcCHHHHHHHH-hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 77765 1 899999999 678999999999999999998 999999999999999999999543321
Q ss_pred ----c-----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHH
Q 013079 235 ----P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGL 304 (450)
Q Consensus 235 ----~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~ 304 (450)
. ...+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++..++. ...++..
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 307 (407)
T 3nra_A 230 SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL-GVAFGSRAIIARMEKLQAIV-SLRAAGYSQAVLRGWFDEAPGWMED 307 (407)
T ss_dssp CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEEEECHHHHHHHHHHHHHH-TSSSCHHHHGGGGGTTCCCTTHHHH
T ss_pred CCCChhhcCcccCCcEEEEeCcccccCCCeeeE-EEEEcCHHHHHHHHHHHhhh-ccCCChHHHHHHHHHHhccchHHHH
Confidence 1 11356799999999999999998 99999999998887665522 11222222222212222 1234666
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccc
Q 013079 305 RMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMA 382 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~ 382 (450)
+.+++.++++++.+.|++++ ..+..|. .|.++++.++. ......+.+.|.. ..| +.
T Consensus 308 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~ 365 (407)
T 3nra_A 308 RIARHQAIRDELLHVLRGCEGVFARTPQ-------------------AGSYLFPRLPKLAVAPAEFVKILRL--QAG-VV 365 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCBCCCCS-------------------BSSEECCBCCCBSSCHHHHHHHHHH--HHC-EE
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeccCC-------------------eeEEEEEeCCCCCCCHHHHHHHHHH--hCC-EE
Confidence 77778889999999998873 3443222 35678888764 2234566666632 123 56
Q ss_pred cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
++.|+.+.. ...+.||||++ . +++.++.+.++|.
T Consensus 366 v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~~~~l~ 399 (407)
T 3nra_A 366 VTPGTEFSP---------------------HTADSVRLNFS-Q--DHEAAVAAARRIV 399 (407)
T ss_dssp CEEGGGTCT---------------------TCTTBEEEECC-S--CHHHHHHHHHHHH
T ss_pred EeCchhhCC---------------------CCCCEEEEEeC-C--CHHHHHHHHHHHH
Confidence 666655321 12578999999 6 3334444444443
No 44
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.5e-28 Score=244.60 Aligned_cols=295 Identities=13% Similarity=0.103 Sum_probs=207.6
Q ss_pred ccCCCChhHHHHHHHHHHHhCCC--e-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccC
Q 013079 93 YSRHFNPTVLNLSRQMAALEGTE--A-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACN 167 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g~~--~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g 167 (450)
|+....+..+++++.+++++|.+ . +++|+| |++|+.+++.+++++||+|+++.++|++ +...+. ..|
T Consensus 47 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g---~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-----~~g 118 (386)
T 2dr1_A 47 RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSS---GTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE-----SNG 118 (386)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSC---HHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH-----HTT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC---hHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH-----HhC
Confidence 33333577899999999999975 3 789999 9999999999999999999999999998 555443 268
Q ss_pred eeEEEeCC-----CCHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCC
Q 013079 168 ITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLG 239 (450)
Q Consensus 168 ~~v~~v~~-----~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g 239 (450)
.++.+++. .|+++|++++.+ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.. ..+....+
T Consensus 119 ~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~ 198 (386)
T 2dr1_A 119 RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWG 198 (386)
T ss_dssp CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTT
T ss_pred CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccC
Confidence 88888876 389999998842 57999999999999999999999999999999999999998432 23444558
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHH----------------HHh-hhhhhccCCCchHHHHHHHHccC-C-
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMM----------------DLH-QGALMLLGPTMNPKVAFELSERI-P- 300 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~----------------~~~-~~~~~~~g~~~~~~~a~~~~~~~-~- 300 (450)
+|+++.|+||++++++. + |+++.++++++.+. ... ........+...+.++..++... +
T Consensus 199 ~di~~~s~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 276 (386)
T 2dr1_A 199 LDVVFSSSQKAFGVPPG-L-AIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKM 276 (386)
T ss_dssp CSEEEEETTSTTCCCSS-C-EEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEeccccccCCCc-e-EEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999997633 5 99999988877662 111 10111111222222232233222 1
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079 301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 379 (450)
Q Consensus 301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g 379 (450)
.+....+++.++++++.+.|++++.++..|.- ...+++++|.++.......+.+.|... |
T Consensus 277 g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g 337 (386)
T 2dr1_A 277 GGKEKWLEMYEKRAKMVREGVREIGLDILAEPG----------------HESPTITAVLTPPGIKGDEVYEAMRKR---G 337 (386)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT----------------CBCSSEEEEECCTTCCHHHHHHHHHHT---T
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc----------------ccCCceEEEEcCCCCCHHHHHHHHHHC---C
Confidence 25566777889999999999988655443320 014679999997322355677777642 3
Q ss_pred ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+.+..|... ..++.||||++ ...+++.++.+.++|.+
T Consensus 338 -i~v~~~~~~-----------------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~ 374 (386)
T 2dr1_A 338 -FELAKGYGS-----------------------VKEKTFRIGHM-GYMKFEDIQEMLDNLRE 374 (386)
T ss_dssp -EECEECCGG-----------------------GTTTEEEEECC-SSCCHHHHHHHHHHHHH
T ss_pred -eEEecCccc-----------------------cCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 555555321 02478999999 64445555555444443
No 45
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=3e-29 Score=253.15 Aligned_cols=310 Identities=16% Similarity=0.211 Sum_probs=214.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC------C---CeEEEecChHHHHHHHHHHHHHhccCCCEE
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG------T---EAAYCTASDKAGMSAISSVLMQLCSSGGHV 144 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g------~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~V 144 (450)
+++.+.+... ...+.|+.. ....++++.||++++ . +.+++|+| |++|+++++..++++||+|
T Consensus 48 ~a~~~~~~~~----~~~~~y~~~--~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~gd~v 118 (422)
T 3fvs_A 48 EAFQHAVSGD----FMLNQYTKT--FGYPPLTKILASFFGELLGQEIDPLRNVLVTVG---GYGALFTAFQALVDEGDEV 118 (422)
T ss_dssp HHHHHHHHSC----GGGGSCCCT--TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESH---HHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHhCC----CccCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECC---hHHHHHHHHHHHcCCCCEE
Confidence 5666655432 112334432 223456666666554 2 47999999 9999999999999999999
Q ss_pred EEeCCCchhHHHHHHHhCCCccCeeEEEeCC-----------------CCHHHHHHhhhcCCceEEEEecCCCCccccc-
Q 013079 145 VAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA- 206 (450)
Q Consensus 145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-----------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~- 206 (450)
+++.|.|+++...+. ..|.++.+++. .|+++|++++ ++++++|++++|+||||.+.
T Consensus 119 l~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~ 192 (422)
T 3fvs_A 119 IIIEPFFDCYEPMTM-----MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFS 192 (422)
T ss_dssp EEEESCCTTHHHHHH-----HTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred EEcCCCchhhHHHHH-----HcCCEEEEEecccccccccccccccCCCCCHHHHHhhc-CCCceEEEECCCCCCCCcCCC
Confidence 999999999887775 25777766653 2899999999 78899999999999999998
Q ss_pred --CHHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079 207 --NIPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 207 --~l~~I~~la~~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 274 (450)
++++|+++|+++|+++|+|++|+.+.+. ... .+.++++.|+||.+|++|.|+ ||+++++++++.+..
T Consensus 193 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~ 271 (422)
T 3fvs_A 193 REELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRT 271 (422)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceE-EEEEeCHHHHHHHHH
Confidence 5999999999999999999999654322 111 256799999999999999998 999999999888876
Q ss_pred HhhhhhhccCCCchHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhc
Q 013079 275 LHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 346 (450)
Q Consensus 275 ~~~~~~~~~g~~~~~~~a~~~~~--------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~ 346 (450)
.... ....++.+.+.++..++. ..+++....+++.++++++.+.|++++..+..|.
T Consensus 272 ~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 335 (422)
T 3fvs_A 272 VHQN-SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ--------------- 335 (422)
T ss_dssp HHHT-TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS---------------
T ss_pred HHhh-ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC---------------
Confidence 5441 112333344444444443 2345666777789999999999999877665553
Q ss_pred cCCCcCcEEEEEeCCHHH-------------HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCC
Q 013079 347 KEYGFGGLLCLDMETEEK-------------ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 413 (450)
Q Consensus 347 ~~~g~g~~~~~~l~~~~~-------------~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~ 413 (450)
.|.++++.++.... ...+...+.. ..| +.++.|+.|..... ...
T Consensus 336 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~g-v~v~~g~~f~~~~~----------------~~~ 392 (422)
T 3fvs_A 336 ----GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK--NKG-LVAIPVSIFYSVPH----------------QKH 392 (422)
T ss_dssp ----BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH--HHC-EECEEGGGGSCHHH----------------HTT
T ss_pred ----eeeEEEEechhhcccccccccccccccHHHHHHHHHH--hcC-EEEeCcHHhcCCcC----------------CCC
Confidence 46688888753211 2345554322 123 67777765432100 011
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 414 SAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 414 ~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
..+.||||++ . +++.++.+.+.|.+
T Consensus 393 ~~~~iRis~~-~--~~e~i~~~l~~l~~ 417 (422)
T 3fvs_A 393 FDHYIRFCFV-K--DEATLQAMDEKLRK 417 (422)
T ss_dssp SCSEEEEECC-C--CHHHHHHHHHHHHH
T ss_pred CCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence 2589999999 6 44444444444444
No 46
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=2.4e-28 Score=247.48 Aligned_cols=290 Identities=14% Similarity=0.107 Sum_probs=214.3
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
..+...++++.||+++|.+..+++++ |++|+..++.+++++||.|++..+.|.++...+. ..|.++..++..
T Consensus 107 ~~~~~~~l~~~la~~~g~~~~i~~~s---Gs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~ 178 (427)
T 2w8t_A 107 TFHDHMEVEQALRDFYGTTGAIVFST---GYMANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHN 178 (427)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTT
T ss_pred CcHHHHHHHHHHHHHhCCCceEEecC---cHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCC
Confidence 45788999999999999998999999 9999999999999999999999999999888775 367888888888
Q ss_pred CHHHHHHhhhcC----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------c--CCCCeE
Q 013079 177 DHEMVNSAIVQG----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADV 242 (450)
Q Consensus 177 d~~~l~~ai~~~----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~--~~g~di 242 (450)
|+++|++++ +. ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.+.. . ..++|+
T Consensus 179 d~~~le~~l-~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di 257 (427)
T 2w8t_A 179 SVEDLDKRL-GRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDF 257 (427)
T ss_dssp CHHHHHHHH-HTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred CHHHHHHHH-HhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcE
Confidence 999999998 44 78999999999999999999999999999999999999995433221 1 125799
Q ss_pred EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMK 321 (450)
Q Consensus 243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 321 (450)
++.|+||++|++| ||+++++++++.+...........+..+...++. .++..++.+....+++.++++++.+.|+
T Consensus 258 ~~~s~sK~~g~~g----G~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~ 333 (427)
T 2w8t_A 258 VVGTFSKSVGTVG----GFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLK 333 (427)
T ss_dssp EEEESSSTTCSCC----EEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhccCC----CEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999654 9999888887766543211111112222222222 2333334446677788899999999998
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCC
Q 013079 322 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 401 (450)
Q Consensus 322 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~ 401 (450)
++++.+..+. +.|+++++.+++......+.+.|... | +.+..|..++.
T Consensus 334 ~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~~---G-i~v~~~~~~~~---------- 381 (427)
T 2w8t_A 334 AMGFRLGTET------------------CDSAIVAVMLEDQEQAAMMWQALLDG---G-LYVNMARPPAT---------- 381 (427)
T ss_dssp HHTCEESCSS------------------CCSSEEEEEESSHHHHHHHHHHHHHT---T-EECEEECTTTS----------
T ss_pred HcCCcccCCC------------------CCCCEEEEEECCHHHHHHHHHHHHHC---C-eEEeeeCCCCC----------
Confidence 8766543221 14569999998755577788887652 3 55554432210
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 402 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
....+.||||++ ...+++.++.+.++|.++
T Consensus 382 ----------~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 382 ----------PAGTFLLRCSIC-AEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ----------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCeEEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 011468999999 766666666666666554
No 47
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.97 E-value=3.8e-28 Score=237.44 Aligned_cols=276 Identities=16% Similarity=0.167 Sum_probs=204.7
Q ss_pred CCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 96 HFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
+.++...++++.||++++.+ .+++|+| +++++++++..+ +||+|+++.|+|+++...+. ..|.++.++
T Consensus 48 y~~~~~~~lr~~la~~~~~~~~~i~~t~G---~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v 117 (337)
T 3p1t_A 48 YPFDAEPRVMRKLAEHFSCPEDNLMLVRG---IDECFDRISAEF--SSMRFVTAWPGFDGYRARIA-----VSGLRHFEI 117 (337)
T ss_dssp CCTTHHHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHT-----TSCCEEEEE
T ss_pred CCCCchHHHHHHHHHHhCcCHHHEEEeCC---HHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHH-----HcCCEEEEe
Confidence 34678899999999999974 6899999 999999999887 89999999999999887764 368888888
Q ss_pred CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----ccCCCCeEEE
Q 013079 174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----PARLGADVVV 244 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----~~~~g~di~~ 244 (450)
+.+ |+++++++ .++++|++++|+||||.+.|+++|.++|+++++ +|+|++|..+... ....+.++++
T Consensus 118 ~~~~~~~~d~~~l~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~ 193 (337)
T 3p1t_A 118 GLTDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVF 193 (337)
T ss_dssp CBCTTSSBCHHHHTTC---CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEE
T ss_pred cCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEE
Confidence 754 78888764 468999999999999999999999999999997 5669998544321 1122678999
Q ss_pred eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
+|+||.+|++|+|+ ||++.++++++.+..... ....+.+.+.++..++.....+..+.+++.++++++.+.|++++
T Consensus 194 ~S~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g 269 (337)
T 3p1t_A 194 RSFSKSYGLAGLRL-GALFGPSELIAAMKRKQW---FCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG 269 (337)
T ss_dssp EESSSTTCCTTTCC-EEEECCHHHHHHHHTTSC---TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeCchhccCcchhe-EEEEeCHHHHHHHHhhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999998 999999999888865433 12223333334433444333455666777788899999999886
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079 325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404 (450)
Q Consensus 325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~ 404 (450)
..+..| .|+++++.+++.+ .+.+.|... | +.++.|+.+.
T Consensus 270 ~~~~~~--------------------~~~~~~~~~~~~~---~~~~~l~~~---g-i~v~~g~~~~-------------- 308 (337)
T 3p1t_A 270 YRVASS--------------------EANFVLVENAAGE---RTLRFLRER---G-IQVKDAGQFG-------------- 308 (337)
T ss_dssp CCBCCC--------------------SSSEEEEECTTTH---HHHHHHHHT---T-EECEEGGGGT--------------
T ss_pred CEECCC--------------------CCeEEEEEcCCHH---HHHHHHHHC---C-eEEEECccCC--------------
Confidence 554322 3568888887533 344444432 3 5667665431
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
. ++.||||++ . ++.++.|.++|+++.
T Consensus 309 --------~-~~~iRis~~-~---~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 309 --------L-HHHIRISIG-R---EEDNDRLLAALAEYS 334 (337)
T ss_dssp --------C-CSEEEEECC-C---HHHHHHHHHHHHHHT
T ss_pred --------C-CCeEEEecC-C---HHHHHHHHHHHHHHh
Confidence 1 478999999 4 555677777776654
No 48
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=9.6e-29 Score=250.38 Aligned_cols=285 Identities=15% Similarity=0.134 Sum_probs=204.9
Q ss_pred hhHHHHHHHHHHHhC-------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 99 PTVLNLSRQMAALEG-------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g-------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
....++++.+|++++ .+.+++|+| |++|+.+++..++++||+|+++.|+|+++...+. ..|.++.
T Consensus 96 ~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g---~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~ 167 (427)
T 3dyd_A 96 IGFLSSREEIASYYHCPEAPLEAKDVILTSG---CSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVK 167 (427)
T ss_dssp TCCHHHHHHHHHHHCBTTBCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred CCcHHHHHHHHHHHhhcCCCCChHHEEEecC---cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence 456789999999988 467999999 9999999999999999999999999999887775 3577777
Q ss_pred EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------c
Q 013079 172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------P 235 (450)
Q Consensus 172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~ 235 (450)
+++.+ |++++++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. .
T Consensus 168 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 168 LYNLLPEKSWEIDLKQLEYLI-DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp EEEEEGGGTTEECHHHHHSSC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCG
T ss_pred EEecccccCCCCCHHHHHHHh-ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccH
Confidence 76542 899999999 778999999999999999999 999999999999999999999655322 1
Q ss_pred cCCC---CeEEEeCCCCccccCccceEEEEEcC-------HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHH
Q 013079 236 ARLG---ADVVVHSISKFISGGADIIAGAVCGP-------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLG 303 (450)
Q Consensus 236 ~~~g---~di~~~S~sK~~g~~g~~igG~l~~~-------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~ 303 (450)
..++ ..+++.|+||.++++|+|+ ||++.+ +++.+.+...... ...++.+.+.++..++.. .+++.
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~ 323 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWLVPGWRL-GWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYH 323 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSSCGGGCC-EEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHhCCCCcEEEEeeccccCCCcCcce-EEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 1222 3478899999999999999 888765 4566666554331 133444444444444442 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh-ccc
Q 013079 304 LRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ-NYA 376 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l~-~~~ 376 (450)
.+.+++.++++.+.+.|++++ +.+..|. .|.++++.++.. .....+...|. .
T Consensus 324 ~~~~~~~~~~~~l~~~L~~~~g~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~-- 382 (427)
T 3dyd_A 324 NTLSFLKSNADLCYGALAAIPGLRPVRPS-------------------GAMYLMVGIEMEHFPEFENDVEFTERLVAE-- 382 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTEEEECCS-------------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceecCCC-------------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHH--
Confidence 667778889999999999874 3544443 456788887611 12345665553 3
Q ss_pred cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079 377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 442 (450)
.| +.+..|+.+. .++.+|||++ . +++++.++.|.+++.++
T Consensus 383 -~g-V~v~~g~~~~-----------------------~~~~iRis~~-~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 383 -QS-VHCLPATCFE-----------------------YPNFIRVVIT-VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp -HC-EECEEGGGGT-----------------------CTTEEEEESC-SCHHHHHHHHHHHHHHHHHH
T ss_pred -CC-EEEECCcccC-----------------------CCCeEEEEEC-CCHHHHHHHHHHHHHHHHHh
Confidence 23 5666554321 1478999999 5 22344444444444443
No 49
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=7.2e-29 Score=247.47 Aligned_cols=305 Identities=13% Similarity=0.114 Sum_probs=216.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAART 149 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~ 149 (450)
+++.+.+.. ..+.|+....+..+++++.+++.+| .+.+++|+| |++|+++++.+++++||+|+++.|
T Consensus 52 ~a~~~~~~~------~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~ 122 (391)
T 4dq6_A 52 DSLKNRLEQ------EIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPG---VIPAISLLINELTKANDKIMIQEP 122 (391)
T ss_dssp HHHHHHHTT------CCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HHHHHHHhC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCC---hHHHHHHHHHHhCCCCCEEEEcCC
Confidence 555555532 2355776667788899999999887 467999999 999999999999999999999999
Q ss_pred CchhHHHHHHHhCCCccCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHh
Q 013079 150 LYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHD 217 (450)
Q Consensus 150 ~y~~~~~~~~~~~~~~~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~ 217 (450)
.|+++...+. ..|.++.+++.+ |+++|++++ ++ +++|++++|+||||.+ .++++|+++|++
T Consensus 123 ~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 195 (391)
T 4dq6_A 123 VYSPFNSVVK-----NNNRELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLK 195 (391)
T ss_dssp CCTHHHHHHH-----HTTCEEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-----HcCCeEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHH
Confidence 9999988775 367888887754 899999999 66 9999999999999999 568899999999
Q ss_pred cCCEEEEeCCCCCCCCC------ccCC-----CCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCC
Q 013079 218 KGVTVVVDNTFSPLVLS------PARL-----GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP 285 (450)
Q Consensus 218 ~gi~livD~~~~~~~~~------~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~ 285 (450)
+|+++|+|++|..+.+. ...+ +.++++.|+||.+|++|.|+ |+++.++ ++.+.+...........++
T Consensus 196 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
T 4dq6_A 196 HNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVLPDEKDYKLLDDAFTRIDIKRNN 274 (391)
T ss_dssp TTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccce-EEEEeCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999654332 1222 34599999999999899998 9988775 8888887665422212223
Q ss_pred CchHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-
Q 013079 286 TMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 361 (450)
Q Consensus 286 ~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~- 361 (450)
.+.+.++..++... +++..+.+++.++++++.+.|++ ++ ..+..|. .+.++++.++.
T Consensus 275 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 335 (391)
T 4dq6_A 275 CFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE-------------------GTYLLWVDFSAL 335 (391)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS-------------------BSSEEEEECGGG
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC-------------------ccEEEEEEhhhc
Confidence 33333333333332 33556667778899999999987 43 4443322 34466788863
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
......+.+.|... +| +.+..|+.+.. ..++.+|||++ . +++.++.+.++|.+
T Consensus 336 ~~~~~~~~~~l~~~--~g-i~v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 336 GLSDEELESILVQK--GK-VALNQGNSFGI---------------------GGSGYQRINLA-C--PRSMLEEALIRIKN 388 (391)
T ss_dssp CCCHHHHHHHHHHT--TC-EECEEGGGGCT---------------------TCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--CC-EEeeCchhhCC---------------------CCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 12356677777642 24 56666644311 12578999999 5 34444444444443
No 50
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.7e-28 Score=243.93 Aligned_cols=278 Identities=18% Similarity=0.196 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHh----CC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 100 TVLNLSRQMAALE----GT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 100 ~~~~l~~~iA~l~----g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
...++++.+|+++ |. +.+++|+| |++|+++++.+++++||+|++++|+|+++...+. ..|.++.
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g---~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~ 150 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNG---AKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVN 150 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecC---HHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence 3567777888776 53 57999999 9999999999999999999999999999987774 3677887
Q ss_pred EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc
Q 013079 172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA 236 (450)
Q Consensus 172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~ 236 (450)
+++.+ |+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ..
T Consensus 151 ~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~ 229 (389)
T 1o4s_A 151 VVETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL 229 (389)
T ss_dssp EEECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHH
T ss_pred EEecCCccCCCCCHHHHHHhc-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHh
Confidence 77653 789999999 778999999999999999977 999999999999999999999554431 11
Q ss_pred C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079 237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 312 (450)
Q Consensus 237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 312 (450)
. .++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +....+++.++
T Consensus 230 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~ 305 (389)
T 1o4s_A 230 DVSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSHT-TSCINTVAQYAALKALEVD--NSYMVQTFKER 305 (389)
T ss_dssp HHCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred hcCCCCCcEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 1 368999999999999899998 99999999888887655421 1222333333333333222 55666777889
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccc
Q 013079 313 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 313 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~ 391 (450)
++++.+.|++++..+..|. .|.++++.++ .....+.+.|. .. | +.+..|+.+
T Consensus 306 ~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~--~~~~~l~~~l~~~~---g-i~v~~g~~f-- 358 (389)
T 1o4s_A 306 KNFVVERLKKMGVKFVEPE-------------------GAFYLFFKVR--GDDVKFCERLLEEK---K-VALVPGSAF-- 358 (389)
T ss_dssp HHHHHHHHHHTTCCCCCCS-------------------BSSEEEEECS--SCHHHHHHHHHHHH---C-EECEEGGGG--
T ss_pred HHHHHHHHHhcCCeeecCC-------------------cceEEEEeCC--CCHHHHHHHHHHHC---C-EEEeCchhc--
Confidence 9999999998755443221 3557888886 12445666654 32 2 455555332
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+. ++.||||++ . +++.++.+.+.|.+
T Consensus 359 --------------------~~-~~~~Ris~~-~--~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 359 --------------------LK-PGFVRLSFA-T--SIERLTEALDRIED 384 (389)
T ss_dssp --------------------TC-TTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred --------------------CC-CCeEEEEEe-C--CHHHHHHHHHHHHH
Confidence 11 368999999 6 34444444444443
No 51
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=8.4e-29 Score=248.82 Aligned_cols=288 Identities=16% Similarity=0.173 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHhC--------C-CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALEG--------T-EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~g--------~-~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
..++++.+|++++ . +.+++|+| |++|+++++..++++||+|+++.|.|+++...+. ..|.++.
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~ 134 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVG---AYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPV 134 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC---cHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence 4567777777765 3 67999999 9999999999999999999999999999988775 2577777
Q ss_pred EeCCC----------------CHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079 172 FVDIS----------------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV 232 (450)
Q Consensus 172 ~v~~~----------------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~ 232 (450)
+++.+ |++++++++ ++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|+.+.
T Consensus 135 ~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 213 (410)
T 3e2y_A 135 FIPLRSKPTDGMKWTSSDWTFDPRELESKF-SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV 213 (410)
T ss_dssp EEECEECCCCSSCCBGGGEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred EEeccccccccccccccCCcCCHHHHHhhc-CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcc
Confidence 66543 899999999 78899999999999999994 68999999999999999999996543
Q ss_pred CC------ccCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-----
Q 013079 233 LS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE----- 297 (450)
Q Consensus 233 ~~------~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~----- 297 (450)
+. ...+ +.++++.|+||.+|++|.|+ ||+++++++++.+...... ....++.+.+.++..++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~ 291 (410)
T 3e2y_A 214 YTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL-GWSIGPAHLIKHLQTVQQN-SFYTCATPLQAALAEAFWIDIKR 291 (410)
T ss_dssp CTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC-EEEECCHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE-EEEEECHHHHHHHHHHHHh-hccCCChHHHHHHHHHHHhhhcc
Confidence 32 1112 46799999999999999998 9999999998888765541 112333344444444433
Q ss_pred ---cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-----------
Q 013079 298 ---RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE----------- 363 (450)
Q Consensus 298 ---~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~----------- 363 (450)
...++....+++.++++++.+.|++++..+..|. .|.++++.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 352 (410)
T 3e2y_A 292 MDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPD-------------------GGYFIIADVSSLGADLSDMNSDEP 352 (410)
T ss_dssp TTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECGGGCCCCTTCCSSCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------ccEEEEEEchhhhccccccccccc
Confidence 1344666677789999999999999877665553 4668888875210
Q ss_pred HHHHHHHHh-hccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 364 KANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 364 ~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
....+...+ .. .| +.++.|+.|.... ..+ ..++.||||++ . +++.++.+.++|.+
T Consensus 353 ~~~~~~~~ll~~---~g-v~v~~g~~f~~~~----------~~~------~~~~~iRis~~-~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 353 YDYKFVKWMTKH---KK-LTAIPVSAFCDSK----------SKP------HFEKLVRFCFI-K--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHHHHH---HS-EECEEGGGGSCTT----------THH------HHTTEEEEECC-C--CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH---cC-EEEeCchhhCCCC----------CCC------CCCCEEEEEEc-C--CHHHHHHHHHHHHh
Confidence 112444433 32 23 6777776543210 000 01588999999 6 55555555555544
No 52
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=1.4e-28 Score=245.97 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.||+++ ..+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.+
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~ 141 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPG---SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVD 141 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecC---hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEE
Confidence 466777777775 3467999999 9999999999999999999999999999988775 36888888
Q ss_pred eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC
Q 013079 173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR 237 (450)
Q Consensus 173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~ 237 (450)
++.+ |+++|+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+ ....
T Consensus 142 v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 217 (391)
T 3h14_A 142 LPTAPENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE 217 (391)
T ss_dssp EECCGGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG
T ss_pred eecCcccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh
Confidence 8764 77777653 7899999999999999987 88999999999999999999965442 2222
Q ss_pred C-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079 238 L-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316 (450)
Q Consensus 238 ~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 316 (450)
+ +.++++.|+||.+|++|.|+ ||++.++++++.+....... ...++.+.+.++..++...+++....+++.++++.+
T Consensus 218 ~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 218 LTDECYVINSFSKYFSMTGWRV-GWMVVPEDQVRVVERIAQNM-FICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp TCSSSEEEEESSSTTCCTTSCC-EEEECCGGGHHHHHHHHHHT-TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEechhccCCcccee-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 2 56799999999999999998 99999999988887655421 122233333333344443344566667788899999
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
.+.|++++.....+. ..+.++++.++. ......+...|... .| +.++.|+.|..
T Consensus 296 ~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~---- 350 (391)
T 3h14_A 296 LERLPKAGFTRIAPP------------------DGAFYVYADVSDLTDDSRAFAAEILEK--AG-VAVTPGLDFDP---- 350 (391)
T ss_dssp HHHHHHHTCCCBCCC------------------CBTTEEEEECTTTCSCHHHHHHHHHHH--HC-EECEEGGGTCT----
T ss_pred HHHHHHcCCCcccCC------------------CeeEEEEEecCccCCCHHHHHHHHHHH--CC-EEEcCchhhCC----
Confidence 999988765332221 134578888863 22355666665431 23 67777755422
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
...++.||||++ . + ++.++.+.+.|.++
T Consensus 351 ----------------~~~~~~iRis~~-~-~-~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 351 ----------------ERGAGTLRFSYA-R-A-TADIEEGLDRLEAF 378 (391)
T ss_dssp ----------------TTGGGEEEEECC-S-C-HHHHHHHHHHHHHH
T ss_pred ----------------CCCCCeEEEEec-C-C-HHHHHHHHHHHHHH
Confidence 011478999999 6 2 34444444444443
No 53
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=1.3e-28 Score=245.73 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ | .+.+++|+| |++|+++++++++++||+|+++.|+|+++...+. ..|.++..
T Consensus 69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~ 140 (388)
T 1j32_A 69 EPRLREAIAQKLQRDNGLCYGADNILVTNG---GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVI 140 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEE
Confidence 455666666665 3 357899999 9999999999999999999999999999887764 36778888
Q ss_pred eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013079 173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA 236 (450)
Q Consensus 173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~ 236 (450)
++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ..
T Consensus 141 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 219 (388)
T 1j32_A 141 LPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIG 219 (388)
T ss_dssp ECCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred ecCCcccCCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHH
Confidence 7753 789999999 778999999999999999965 899999999999999999999655432 11
Q ss_pred C-----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHH
Q 013079 237 R-----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHC 310 (450)
Q Consensus 237 ~-----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~ 310 (450)
. .+.|+++.|+||++|++|+|+ ||++.++++++.+....... ....+.+.+.++..++.. .+++.+..+++.
T Consensus 220 ~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 297 (388)
T 1j32_A 220 AASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFA 297 (388)
T ss_dssp GSCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred HccccccCCEEEEeechhccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 257999999999999899998 99999999888887654421 122233333333334432 234566667788
Q ss_pred HHHHHHHHHHHhC-CCee
Q 013079 311 HRALIFARRMKKL-GLKV 327 (450)
Q Consensus 311 ~~~~~l~~~L~~~-~~~v 327 (450)
++++++.+.|+++ +..+
T Consensus 298 ~~~~~l~~~L~~~~g~~~ 315 (388)
T 1j32_A 298 ERRRYMLDALNAMPGLEC 315 (388)
T ss_dssp HHHHHHHHHHHTCTTCBC
T ss_pred HHHHHHHHHHhhCCCCcc
Confidence 8999999999887 3343
No 54
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.97 E-value=4.9e-28 Score=240.13 Aligned_cols=280 Identities=17% Similarity=0.206 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
...++++.+|++++ .+.+++|+| |++|+++++.+++++||+|++++|+|+++...+. ..|.++.
T Consensus 67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~ 138 (370)
T 2z61_A 67 GILELREKISELYKDKYKADIIPDNIIITGG---SSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPV 138 (370)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEECCC---hHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence 35677888887764 367999999 9999999999999999999999999999988775 3688888
Q ss_pred EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC----CCCeE
Q 013079 172 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADV 242 (450)
Q Consensus 172 ~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~----~g~di 242 (450)
.++ .|+++|++++ ++++++|++++|+||||.+.|++ |.++|+++|+++|+|++|+.+.+ +... .+.|+
T Consensus 139 ~v~-~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i 215 (370)
T 2z61_A 139 FCD-FTVESLEEAL-SDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTI 215 (370)
T ss_dssp EEC-SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEE
T ss_pred EeC-CCHHHHHHhc-ccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEE
Confidence 888 7899999999 77899999999999999999999 99999999999999999955432 2222 26799
Q ss_pred EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHH
Q 013079 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRM 320 (450)
Q Consensus 243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L 320 (450)
++.|+||.+|++|+|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.++++++.+.|
T Consensus 216 ~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 293 (370)
T 2z61_A 216 LINGFSKLYAMTGWRI-GYVISNDEIIEAILKLQQNL-FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYV 293 (370)
T ss_dssp EEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhccCCccceE-EEEEECHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999899998 99999999988887655421 112222222222222221 1223445566788899999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccccccccccc
Q 013079 321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSST 399 (450)
Q Consensus 321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~~~~~~~~~ 399 (450)
++++..+..|. .|.++++.++. ....+.+.|. .. | +.+..|+.+..
T Consensus 294 ~~~g~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~~---g-i~v~~g~~f~~-------- 340 (370)
T 2z61_A 294 KDFGWEVNNPI-------------------GAYYVFPNIGE--DGREFAYKLLKEK---F-VALTPGIGFGS-------- 340 (370)
T ss_dssp HHTTCBCCCCC-------------------BTTEECCBCSS--CHHHHHHHHHHHH---C-EECEEGGGGCG--------
T ss_pred HHcCCeecCCC-------------------cceEEEEecCC--CHHHHHHHHHHhC---C-EEEeCchhhCC--------
Confidence 88765443221 35577888874 2456666664 32 3 56665544311
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 400 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
..++.+|||++ . +++.++.+.+.|.+
T Consensus 341 -------------~~~~~~Ri~~~-~--~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 341 -------------KGKNYIRISYA-N--SYENIKEGLERIKE 366 (370)
T ss_dssp -------------GGSSBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence 01478999999 5 33444444444443
No 55
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=2.2e-28 Score=249.37 Aligned_cols=288 Identities=16% Similarity=0.170 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHh----CC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 100 TVLNLSRQMAALE----GT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 100 ~~~~l~~~iA~l~----g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
...++++.||+++ |. +.+++|+| +++|++++++.++++||+|+++.|+|+++...+. ..|.++..
T Consensus 119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G---~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~ 190 (448)
T 3aow_A 119 GFTPLRETLMKWLGKRYGISQDNDIMITSG---SQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQ 190 (448)
T ss_dssp CCHHHHHHHHHHHHHHHCCCTTSEEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEE
T ss_pred CcHHHHHHHHHHHHHhcCcCChhhEEEeCc---HHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEE
Confidence 4567888888887 75 67999999 9999999999999999999999999999988775 36777777
Q ss_pred eCCC----CHHHHHHhhhc----C--CceEEE-EecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013079 173 VDIS----DHEMVNSAIVQ----G--RTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---- 234 (450)
Q Consensus 173 v~~~----d~~~l~~ai~~----~--~t~lv~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---- 234 (450)
++.+ |+++|++++ + + ++++|+ +++++||||.+.+ +++|.++|+++|+++|+|++|+.+.+.
T Consensus 191 v~~~~~g~d~~~L~~~l-~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~ 269 (448)
T 3aow_A 191 IPLDDEGMKVEILEEKL-KELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPE 269 (448)
T ss_dssp EEEETTEECHHHHHHHH-HHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCC
T ss_pred eccCCCCCCHHHHHHHH-hhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC
Confidence 7653 899999998 4 4 789985 6899999999986 569999999999999999999555331
Q ss_pred --ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHHHHH
Q 013079 235 --PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRM 306 (450)
Q Consensus 235 --~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~ 306 (450)
...+ +.++++.|+||.++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++... +++....
T Consensus 270 ~~~~~~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~ 346 (448)
T 3aow_A 270 KKIKALDNEGRVIYLGTFSKILA-PGFRI-GWMVGDPGIIRKMEIAKQST-DLCTNVFGQVVAWRYVDGGYLEKHIPEIR 346 (448)
T ss_dssp CCTGGGCTTSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCHHhcCCCCCEEEEccchhhcc-ccccE-EEEEeCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1122 57899999999999 89998 99999999998887655422 1233444455544444432 2344555
Q ss_pred HHHHHHHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 307 KEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 307 ~~~~~~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
+++.++++.+.+.|+++ +..+..|. .|.++++.++...+...+...|... | +.+
T Consensus 347 ~~~~~~~~~l~~~L~~~~~~g~~~~~p~-------------------~g~~~~v~~~~~~~~~~l~~~l~~~---g-V~v 403 (448)
T 3aow_A 347 KFYKPRRDAMLEALEEFMPEGVKWTKPE-------------------GGMFIWVTLPDGIDSKKMLERAIKK---G-VAY 403 (448)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEeCCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-cEE
Confidence 66778899999999874 34444332 4678999997422245677666542 3 566
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 442 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 442 (450)
..|+.+... +..++.||||++ .. ++++.++.|.+++++.
T Consensus 404 ~pg~~f~~~-------------------~~~~~~iRls~~-~~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 404 VPGEAFYAH-------------------RDVKNTMRLNFT-YVDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp EEGGGGSTT-------------------CCCCSEEEEECS-SSCTHHHHHHHHHHHHHHHHH
T ss_pred EcchhhcCC-------------------CCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence 655432110 112578999999 53 3445555555555543
No 56
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.2e-28 Score=244.28 Aligned_cols=272 Identities=15% Similarity=0.097 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHHh----CC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 99 PTVLNLSRQMAALE----GT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 99 ~~~~~l~~~iA~l~----g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
+...++++.+|+++ |. +.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.+
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g---~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~ 146 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG---SKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQ 146 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCE
Confidence 34567888888887 63 47999999 9999999999999999999999999999988775 25777
Q ss_pred EEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------
Q 013079 170 TTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------ 233 (450)
Q Consensus 170 v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------ 233 (450)
+..++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+
T Consensus 147 ~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 225 (412)
T 2x5d_A 147 VRSVPLVPGIDFFNELERAIRES-IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAP 225 (412)
T ss_dssp EEEEECSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred EEEeecCCccCCCCCHHHHHHhc-ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCC
Confidence 7777653 468888888 678999999999999999976 68899999999999999999955432
Q ss_pred CccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHH
Q 013079 234 SPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKE 308 (450)
Q Consensus 234 ~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~ 308 (450)
+... .+.|+++.|+||++|++|+|+ ||+++++++++.+...... ....++.+.+.++..++... +++....++
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 303 (412)
T 2x5d_A 226 SIMQVPGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIARQ 303 (412)
T ss_dssp CGGGSTTGGGTEEEEEECC-CCSCTTSCC-EEEEECHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred ChhhccCccCcEEEEecCccccCCcccce-EEEEcCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1222 267899999999999899998 9999999998888765442 11233344444444444432 345666677
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhhcccccccccccc
Q 013079 309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSL 385 (450)
Q Consensus 309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~l~~~~~~g~i~vs~ 385 (450)
+.++++++.+.|++++..+..| ..|.++++.++... ....+...|.. +.| +.+..
T Consensus 304 ~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~ 361 (412)
T 2x5d_A 304 YQQRRDVLVKGLREAGWMVENP-------------------KASMYVWAKIPEPYAHLGSLEFAKKLLQ--DAK-VSVSP 361 (412)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCC-------------------SBSSEEEEECCTTTGGGCHHHHHHHHHH--HHC-EECEE
T ss_pred HHHHHHHHHHHHHHCCCEecCC-------------------CeeeEEEEEcCCccCCCCHHHHHHHHHH--HCC-EEEeC
Confidence 8889999999998875544322 13557889986321 24567666632 123 56666
Q ss_pred ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079 386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 425 (450)
Q Consensus 386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 425 (450)
|+.+.. ..++.||||++ .
T Consensus 362 g~~f~~---------------------~~~~~iRis~~-~ 379 (412)
T 2x5d_A 362 GIGFGD---------------------YGDDHVRFALI-E 379 (412)
T ss_dssp GGGGCG---------------------GGTTEEEEECC-S
T ss_pred chhhCC---------------------CCCCeEEEEec-C
Confidence 644311 01478999999 6
No 57
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=3.2e-28 Score=242.09 Aligned_cols=305 Identities=15% Similarity=0.082 Sum_probs=215.9
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAART 149 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~ 149 (450)
+++.+.+.. ..+.|+....+..+++++.+++.+| .+.+++|+| |++|+++++.+++++||+|+++.|
T Consensus 44 ~a~~~~~~~------~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~ 114 (383)
T 3kax_A 44 TALKKRIEH------PIFGYTLPPENIGDIICNWTKKQYNWDIQKEWIVFSAG---IVPALSTSIQAFTKENESVLVQPP 114 (383)
T ss_dssp HHHHHHHHS------CCCCCCCCCTTHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHCCTTCEEEECSS
T ss_pred HHHHHHHhc------CCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEcCC---HHHHHHHHHHHhCCCCCEEEEcCC
Confidence 555555543 1345665567788999999999877 357999999 999999999999999999999999
Q ss_pred CchhHHHHHHHhCCCccCeeEEEeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhc
Q 013079 150 LYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDK 218 (450)
Q Consensus 150 ~y~~~~~~~~~~~~~~~g~~v~~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~ 218 (450)
+|+++...+. ..|.++.+++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++
T Consensus 115 ~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~ 188 (383)
T 3kax_A 115 IYPPFFEMVT-----TNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKY 188 (383)
T ss_dssp CCHHHHHHHH-----HTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-----HcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHC
Confidence 9999987775 36778888775 3899999999 889999999999999999987 55677779999
Q ss_pred CCEEEEeCCCCCCCCC------ccCC-----CCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCC
Q 013079 219 GVTVVVDNTFSPLVLS------PARL-----GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPT 286 (450)
Q Consensus 219 gi~livD~~~~~~~~~------~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~ 286 (450)
|+++|+|++|..+.+. ...+ +.++++.|+||.++++|.|+ ||++. ++++++.+...........++.
T Consensus 189 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (383)
T 3kax_A 189 NVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQA-SIIIIPNEKLRQAFTSIQYRQGFHGLNI 267 (383)
T ss_dssp TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCH
T ss_pred CCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhh-eEEEeCCHHHHHHHHHHHhhcccCCCCH
Confidence 9999999999554322 1222 56699999999999999998 99887 6788888876654221112222
Q ss_pred chHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-
Q 013079 287 MNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 362 (450)
Q Consensus 287 ~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~- 362 (450)
+.+.++..++... +++..+.+++.++++++.+.|++ + +..+..|. .+.++++.++..
T Consensus 268 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 328 (383)
T 3kax_A 268 FAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPE-------------------GSFLLWIDCSALN 328 (383)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCS-------------------BSSEEEEECGGGC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-------------------ceEEEEEEccccC
Confidence 3333333333322 22555666778889999999987 4 44544332 344667888631
Q ss_pred HHHHHHHHHhh-ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 363 EKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 363 ~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
.....+.+.|. . .| +.++.|+.+.. ..++.+|||++ . .++.++.+.++|.+
T Consensus 329 ~~~~~~~~~l~~~---~g-i~v~~g~~~~~---------------------~~~~~iRi~~~-~--~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 329 LSQDERTKLLEEK---GK-IIVEPGEKYGL---------------------GGEEHIGINIG-C--PRSVLEEILNRLRH 380 (383)
T ss_dssp CCHHHHHHHHHHT---SC-EECEESGGGCT---------------------TCTTEEEEECS-S--CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh---CC-EEeECchhhcC---------------------CCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 23566777775 3 23 66666654321 12588999999 5 34445555444443
No 58
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=8.3e-29 Score=246.22 Aligned_cols=284 Identities=19% Similarity=0.158 Sum_probs=205.7
Q ss_pred hhHHHHHHHHHHHh----CC----C-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 99 PTVLNLSRQMAALE----GT----E-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 99 ~~~~~l~~~iA~l~----g~----~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
+...++++.+|+++ |. + .+++|+| +++|+++++++++++||+|+++.|+|+++...+. ..|.+
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~ 134 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIG---SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLR 134 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC---cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCE
Confidence 46788999999987 75 3 7999999 9999999999999999999999999999988775 25778
Q ss_pred EEEeCC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc
Q 013079 170 TTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA 236 (450)
Q Consensus 170 v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~ 236 (450)
+..++. .|++++++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+ +..
T Consensus 135 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 213 (376)
T 2dou_A 135 TFLIPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL 213 (376)
T ss_dssp EEEECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG
T ss_pred EEEeeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh
Confidence 888775 3778888888 678999999999999999986 67899999999999999999954432 222
Q ss_pred CC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHH
Q 013079 237 RL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCH 311 (450)
Q Consensus 237 ~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~ 311 (450)
.+ +.++++.|+||.+|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.+
T Consensus 214 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 291 (376)
T 2dou_A 214 ALPGAKERVVELFSLSKSYNLAGFRL-GFALGSEEALARLERVKGVI-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRE 291 (376)
T ss_dssp GSTTGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCCCCcEEEEecchhhcCChhhee-EEEecCHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22 57899999999999899998 99999999998887655421 1223334444444444432 234555666788
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~ 391 (450)
+++.+.+.|+++ ..+..| ..|.++++.++.......+.+.|... | +.+..|+.+..
T Consensus 292 ~~~~l~~~L~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f~~ 347 (376)
T 2dou_A 292 RALGMAEALKGV-LSLLPP-------------------RATMYLWGRLPEGVDDLEFGLRLVER---G-VALAPGRGFGP 347 (376)
T ss_dssp HHHHHHHHHTTT-SEECCC-------------------CBSSEEEEECCTTCCHHHHHHHHHHT---T-EECEEGGGGCG
T ss_pred HHHHHHHHHHHh-cCccCC-------------------CeeEEEEEECCCCCCHHHHHHHHHHC---C-EEEcCchhhCC
Confidence 899999999887 544322 13557889997422245666666542 3 56665544311
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
..++.||||++ . +++.++.+.+.|.+
T Consensus 348 ---------------------~~~~~~Ris~~-~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 348 ---------------------GGKGFVRIALV-R--PLEELLEAAKRIRE 373 (376)
T ss_dssp ---------------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ---------------------CCCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence 01478999999 6 34444544444443
No 59
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=3.9e-28 Score=241.75 Aligned_cols=282 Identities=17% Similarity=0.179 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079 100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 176 (450)
Q Consensus 100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~- 176 (450)
...++++.||++++. +.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++..++.+
T Consensus 62 ~~~~l~~~la~~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~ 133 (381)
T 1v2d_A 62 GLPALREALAEEFAVEPESVVVTSG---ATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDL 133 (381)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEE
T ss_pred CCHHHHHHHHHhcCCChhhEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCC
Confidence 467899999999986 46999999 9999999999999999999999999999887764 257777777653
Q ss_pred -------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc--CCC
Q 013079 177 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLG 239 (450)
Q Consensus 177 -------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~--~~g 239 (450)
|+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+ +.. ..+
T Consensus 134 ~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~ 212 (381)
T 1v2d_A 134 TPEGFRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPE 212 (381)
T ss_dssp ETTEEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTT
T ss_pred CCccCCcCHHHHHHhc-CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCC
Confidence 899999999 788999999999999999976 88999999999999999999965432 122 237
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-c--CCcHHHHHHHHHHHHHHH
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-R--IPHLGLRMKEHCHRALIF 316 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~--~~~l~~~~~~~~~~~~~l 316 (450)
+|+++.|+||.++++|+|+ ||++.++++++.+...... .....+.+.+.++..++. . .+++....+++.++++++
T Consensus 213 ~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 290 (381)
T 1v2d_A 213 RTFTVGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQW-TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLL 290 (381)
T ss_dssp TEEEEEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHHhh-cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999899998 9999998888887665441 112333344444433433 2 344666677788999999
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079 317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 396 (450)
Q Consensus 317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~ 396 (450)
.+.|++.+..+..|. .|.++++.++..+ +...+.. .| +.+..|+.+...
T Consensus 291 ~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~----~~~~l~~---~g-i~v~~g~~~~~~---- 339 (381)
T 1v2d_A 291 AGGLRAMGLRVYVPE-------------------GTYFLMAELPGWD----AFRLVEE---AR-VALIPASAFYLE---- 339 (381)
T ss_dssp HHHHHHTTCCEECCS-------------------BSSEEEEECTTCC----HHHHHHH---TC-EECEEGGGGCSS----
T ss_pred HHHHHHCCCEecCCC-------------------cceEEEEecChHh----HHHHHHh---CC-EEEecchHhCCC----
Confidence 999998766654332 3558889887432 3333332 23 455555433110
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
...++.||||++ . +++.++.+.+.|.+
T Consensus 340 ---------------~~~~~~iRi~~~-~--~~~~i~~~~~~l~~ 366 (381)
T 1v2d_A 340 ---------------DPPKDLFRFAFC-K--TEEELHLALERLGR 366 (381)
T ss_dssp ---------------SCCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence 012578999999 6 34444444444443
No 60
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=4.6e-29 Score=247.13 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=209.1
Q ss_pred ccccCCCChhHHHHHHH-HHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 91 FIYSRHFNPTVLNLSRQ-MAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~-iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
|.+++...+...++++. +|+++|.+.+++|+| |++|+.+++.+++++||+|+++.++|+++...+. ..|.+
T Consensus 45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~ 116 (371)
T 2e7j_A 45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNG---AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLN 116 (371)
T ss_dssp --------CCHHHHHHTHHHHHTTSSEEEEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCE
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCC---hHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCe
Confidence 44556677889999999 999999888899999 9999999999999999999999999999988764 36888
Q ss_pred EEEeC--CC-----CHHHHHHhhhc-----CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCc
Q 013079 170 TTFVD--IS-----DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSP 235 (450)
Q Consensus 170 v~~v~--~~-----d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~ 235 (450)
+.+++ .+ |+++|++++ + +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+... .+.
T Consensus 117 ~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 195 (371)
T 2e7j_A 117 IALVPKTDYPDYAITPENFAQTI-EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSL 195 (371)
T ss_dssp EEEECCCCTTTCCCCHHHHHHHH-HHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCH
T ss_pred EEEeecccCCCCCcCHHHHHHHH-HhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCCh
Confidence 98888 65 899999999 5 689999999999999999999999999999999999999994432 334
Q ss_pred cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH-HHHHhhhhhhc----cCC-CchHHHHHHHHccCCcHH-HHHHH
Q 013079 236 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-MMDLHQGALML----LGP-TMNPKVAFELSERIPHLG-LRMKE 308 (450)
Q Consensus 236 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-l~~~~~~~~~~----~g~-~~~~~~a~~~~~~~~~l~-~~~~~ 308 (450)
..+++|+++.|+||++++++ ++ |+++.++++++. +.....+.... .+. ...+..+... .++.+. ...++
T Consensus 196 ~~~~~di~~~s~sK~~~~~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~l~~~~~~~~~~ 271 (371)
T 2e7j_A 196 KEIGADFIVGSGHKSMAASG-PI-GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMA--SFPHVRERIKRW 271 (371)
T ss_dssp HHHTCSEEEEEHHHHSSCCS-SC-EEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHH--HHHHHHHHGGGH
T ss_pred hhcCCCEEEecCCcCCCCCC-Cc-EEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHH--HHHHHHHHHHHH
Confidence 44578999999999888654 66 999988877666 54332211110 222 2222222211 122222 33445
Q ss_pred H--HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079 309 H--CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 386 (450)
Q Consensus 309 ~--~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G 386 (450)
. .++++++.+.|++++..+..|.. +.+++++|.++ ....+.+.|.. .| +.+..
T Consensus 272 ~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~l~~---~g-i~~~~- 326 (371)
T 2e7j_A 272 DEEVEKARRFAAEMEKLGIKQLGDNP-----------------HNHDLMFFHAE---VLYEISKKAKG---GR-FFLYR- 326 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESSSS-----------------CCSSEEEEECH---HHHHHHHHSSS---GG-GHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCcEEecCCC-----------------ccCceEEEECC---CHHHHHHHHHH---CC-EEEEe-
Confidence 6 78888999999888666554320 13568999986 35677777764 23 33221
Q ss_pred cccccccccccccCCCCCHHHHHhc---CCCCCeEE-EEeCCCC-CHHHHHHHHHHHHHHhh
Q 013079 387 YYETLMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVGYLG-TLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 387 ~~~s~~~~~~~~~~~~~~~~~~~~~---g~~~~~iR-iS~g~~~-~~~~~i~~l~~al~~~~ 443 (450)
.. ... |..++.|| ||++ .. .+++.++.+.++|.++.
T Consensus 327 ~~--------------------~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 327 EL--------------------KSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp HH--------------------HHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred cc--------------------ccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHH
Confidence 00 011 33368899 9999 76 67777778777777654
No 61
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.96 E-value=2.5e-28 Score=243.56 Aligned_cols=285 Identities=15% Similarity=0.134 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
..++++.+|+++ | .+ .+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.
T Consensus 69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~ 140 (386)
T 1u08_A 69 VQALREAIAQKTERLYGYQPDADSDITVTAG---ATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVK 140 (386)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCTTTTEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCC---hHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence 456667777663 5 35 8999999 9999999999999999999999999999888764 3577777
Q ss_pred EeCC------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Ccc
Q 013079 172 FVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPA 236 (450)
Q Consensus 172 ~v~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~~ 236 (450)
.++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+ +..
T Consensus 141 ~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 219 (386)
T 1u08_A 141 RMALQPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVL 219 (386)
T ss_dssp EEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGG
T ss_pred EeecCcccCcCCHHHHHHhh-cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChh
Confidence 7765 3799999999 788999999999999999986 68999999999999999999965432 111
Q ss_pred C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079 237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 311 (450)
Q Consensus 237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 311 (450)
. .+.|+++.|+||.++++|+|+ ||++.++++++.+....... ....+.+.+.++..++.. .+++....+++.+
T Consensus 220 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 297 (386)
T 1u08_A 220 AHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQYL-TFSVNTPAQLALADMLRAEPEHYLALPDFYRQ 297 (386)
T ss_dssp GSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHH
T ss_pred cccCccCcEEEEecchhhcCCcccce-EEEEcCHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 368999999999999999998 99999999888887654311 123333444444344433 2345556667788
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
+++++.+.|++++..+..|. .|.++++.++.. .....+.+.|.. ..| +.+..|+.+
T Consensus 298 ~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f 355 (386)
T 1u08_A 298 KRDILVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVF 355 (386)
T ss_dssp HHHHHHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGG
T ss_pred HHHHHHHHHHHCCCeecCCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEeCchHh
Confidence 89999999988766554332 356899998742 124566665532 123 555555332
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
... ...++.||||++ . +++.++.+.+.|.
T Consensus 356 ~~~-------------------~~~~~~iRis~~-~--~~~~i~~~~~~l~ 384 (386)
T 1u08_A 356 CAD-------------------PFPHKLIRLCFA-K--KESTLLAAAERLR 384 (386)
T ss_dssp CSS-------------------CCCSCEEEEECC-S--CHHHHHHHHHHHT
T ss_pred CCC-------------------CCCCCEEEEEEc-C--CHHHHHHHHHHHh
Confidence 110 012578999999 5 3555555554443
No 62
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.96 E-value=5.6e-28 Score=241.69 Aligned_cols=289 Identities=12% Similarity=0.079 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHhC-----CC-eEEEecChHHHHHHHHHHHHHhccCC-----CEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079 100 TVLNLSRQMAALEG-----TE-AAYCTASDKAGMSAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNI 168 (450)
Q Consensus 100 ~~~~l~~~iA~l~g-----~~-~~~~tsg~~~gt~ai~~al~~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~ 168 (450)
..+.+.+.+++.+| .+ .+++|+| +++|+++++++++++| |+|+++.|.|+++...+. ..|.
T Consensus 71 lr~~la~~l~~~~g~~~~~~~~~i~~t~g---~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~ 142 (396)
T 3jtx_A 71 LRQACANWLKRRYDGLTVDADNEILPVLG---SREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGG 142 (396)
T ss_dssp HHHHHHHHHHHHTTTCCCCTTTSEEEESS---HHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEcCC---cHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCC
Confidence 33444444444445 45 8999999 9999999999999996 799999999999988765 3677
Q ss_pred eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCc---c
Q 013079 169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSP---A 236 (450)
Q Consensus 169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~---~ 236 (450)
++.+++.+ |+++|++++ ++++++|++++|+||||.+.+.+ +|+++|+++|+++|+|++|..+.+.. .
T Consensus 143 ~~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~ 221 (396)
T 3jtx_A 143 EIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPL 221 (396)
T ss_dssp EEEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCC
T ss_pred EEEEeecCCCCCccCHHHHHHhh-ccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 88887753 778888888 66899999999999999998755 59999999999999999996554321 1
Q ss_pred -----------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH
Q 013079 237 -----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 305 (450)
Q Consensus 237 -----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 305 (450)
..+.++++.|+||.++++|.|+ ||++.++++++.+...... .....+.+.+.++..++...+++...
T Consensus 222 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~ 299 (396)
T 3jtx_A 222 GCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS-GFVAGDAELLKNFLLYRTY-HGSAMSIPVQRASIAAWDDEQHVIDN 299 (396)
T ss_dssp CHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-EEEEECHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHCCHHHHHH
T ss_pred hHHhhhhhcccccCcEEEEeccccccCCcccce-EEEEeCHHHHHHHHHHHhh-cccCCCHHHHHHHHHHhCCHHHHHHH
Confidence 2578899999999999999998 9999999999888765541 11223334444444444444556666
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013079 306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 385 (450)
Q Consensus 306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~ 385 (450)
.+++.++++.+.+.|+++ ..+..| ..|.++++.++.. ....+...|.. ..| +.++.
T Consensus 300 ~~~~~~~~~~l~~~l~~~-~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~~l~~--~~g-i~v~~ 355 (396)
T 3jtx_A 300 RRLYQEKFERVIPILQQV-FDVKLP-------------------DASFYIWLKVPDG-DDLAFARNLWQ--KAA-IQVLP 355 (396)
T ss_dssp HHHHHHHHHHHHHHHTTT-SCCCCC-------------------SSSSEEEEECTTS-CHHHHHHHHHH--HHC-EECEE
T ss_pred HHHHHHHHHHHHHHHHhc-CCccCC-------------------CeeEEEEEECCCC-CHHHHHHHHHH--HCC-EEEeC
Confidence 777888889999999765 222222 2466899999852 24456665522 123 67777
Q ss_pred ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
|+.+...... .+...+.||||++ . +++.++.+.+.|.+
T Consensus 356 g~~~~~~~~~---------------~~~~~~~iRis~~-~--~~~~i~~~l~~l~~ 393 (396)
T 3jtx_A 356 GRFLARDTEQ---------------GNPGEGYVRIALV-A--DVATCVKAAEDIVS 393 (396)
T ss_dssp GGGGCCCCTT---------------CCTTTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ChHhCCcccc---------------cCCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 7665331100 0123589999999 6 34445555454443
No 63
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.6e-28 Score=245.42 Aligned_cols=296 Identities=15% Similarity=0.138 Sum_probs=210.7
Q ss_pred ccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccC
Q 013079 93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACN 167 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g 167 (450)
|+....+..+++++.+++++|.+ .+++|+| |++|+++++.+++++||+|+++.|+|++ +...+. ..|
T Consensus 61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g---~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g 132 (393)
T 1vjo_A 61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGT---GTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-----RYG 132 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCc---hHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH-----HcC
Confidence 44333467889999999999874 6899999 9999999999999999999999999998 665553 267
Q ss_pred eeEEEeCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCC
Q 013079 168 ITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLG 239 (450)
Q Consensus 168 ~~v~~v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g 239 (450)
.++.+++. .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+....+
T Consensus 133 ~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~ 211 (393)
T 1vjo_A 133 ADVRTISKPWGEVFSLEELRTAL-ETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWG 211 (393)
T ss_dssp CEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTT
T ss_pred CceEEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccC
Confidence 88888875 3899999999 66 89999999999999999999999999999999999999984 2223333457
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh---hhh-------------hhcc--C-CCchHHHHHHHHccC-
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH---QGA-------------LMLL--G-PTMNPKVAFELSERI- 299 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---~~~-------------~~~~--g-~~~~~~~a~~~~~~~- 299 (450)
+|+++.|+||++++++ ++ |+++.++++++.+.... ... .... + +.+.+.++..++...
T Consensus 212 ~di~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~ 289 (393)
T 1vjo_A 212 VDLAYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA 289 (393)
T ss_dssp CSEEECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEcCcccccCCC-ce-EEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999998777 67 99999998887764320 000 0111 1 112222222333222
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079 300 -PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 378 (450)
Q Consensus 300 -~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~ 378 (450)
..+....+++.++++++.+.|++++.++..|. . +..+.+++|.++.......+.+.|... +
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 351 (393)
T 1vjo_A 290 QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK---------------E-YRLPTLTTVCIPDGVDGKAVARRLLNE--H 351 (393)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG---------------G-GBCSSEEEEECCTTCCHHHHHHHHHHH--H
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCc---------------c-ccCCcEEEEEcCCCCCHHHHHHHHHhh--C
Confidence 12455667788999999999998765544332 0 013568899886322355677776542 2
Q ss_pred cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013079 379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~ 442 (450)
| +.+..|+.+. .++.+||| ++ ..+.++.++.+.++|.++
T Consensus 352 g-i~v~~g~~~~-----------------------~~~~iRis~~~-~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 352 N-IEVGGGLGEL-----------------------AGKVWRVGLMG-FNSRKESVDQLIPALEQV 391 (393)
T ss_dssp C-EECEECCGGG-----------------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred C-EEEecCcccc-----------------------CCCEEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence 3 5666654321 14789999 56 556666677776666654
No 64
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.96 E-value=2.9e-28 Score=243.25 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHh----C----CCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALE----G----TEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
..++++.+|+++ | .+. +++|+| |++|+.+++.+++++||+|+++.|+|+++...+. ..|.++.
T Consensus 65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~ 136 (389)
T 1gd9_A 65 LLELREAIAEKLKKQNGIEADPKTEIMVLLG---ANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPV 136 (389)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESS---TTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEE
Confidence 456777777776 6 357 999999 9999999999999999999999999999987765 2577777
Q ss_pred EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Cc
Q 013079 172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SP 235 (450)
Q Consensus 172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~ 235 (450)
.++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+ +.
T Consensus 137 ~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 215 (389)
T 1gd9_A 137 EVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSI 215 (389)
T ss_dssp EEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCG
T ss_pred EeccCCccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCH
Confidence 77642 789999999 778999999999999999974 89999999999999999999955433 12
Q ss_pred cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC---cHHHHHHH
Q 013079 236 AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKE 308 (450)
Q Consensus 236 ~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~ 308 (450)
.. .++|+++.|+||.+|++|+|+ ||+++++++++.+....... ....+.+.+.++..++.... ++....++
T Consensus 216 ~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 293 (389)
T 1gd9_A 216 ASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKE 293 (389)
T ss_dssp GGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhccCCCCCEEEEecChhhcCCcccce-EEEEECHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 22 257999999999999999998 99999999988887655421 12233333434333433222 34555566
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh-ccccccccccccc
Q 013079 309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ-NYAQFGFMAVSLG 386 (450)
Q Consensus 309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~-~~~~~g~i~vs~G 386 (450)
+.++++++.+.|++++..+..|. .|.++++.++. ......+.+.|. . .| +.+..|
T Consensus 294 ~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g 350 (389)
T 1gd9_A 294 YDRRRKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLKE---AR-VAVVPG 350 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHHH---TC-EECEEG
T ss_pred HHHHHHHHHHHHHHcCCeecCCC-------------------eeeEEEEeccCCCCCHHHHHHHHHHh---CC-EEEeCc
Confidence 78889999999998765443221 34567777752 112456666664 3 23 555555
Q ss_pred cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+.+.. ..++.||||++ . + ++.++.+.+.|.+
T Consensus 351 ~~~~~---------------------~~~~~iRi~~~-~-~-~~~i~~~l~~l~~ 381 (389)
T 1gd9_A 351 SAFGK---------------------AGEGYVRISYA-T-A-YEKLEEAMDRMER 381 (389)
T ss_dssp GGGCG---------------------GGTTBEEEECC-S-C-HHHHHHHHHHHHH
T ss_pred hhhCC---------------------CCCCeEEEEec-C-C-HHHHHHHHHHHHH
Confidence 43210 01478999999 6 3 3444444444443
No 65
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.96 E-value=5.7e-28 Score=241.98 Aligned_cols=288 Identities=12% Similarity=0.070 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ | .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++..
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g---~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~ 139 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAG---VVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIE 139 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEe
Confidence 566777777763 5 457999999 9999999999999999999999999999987775 36777777
Q ss_pred eCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Cc
Q 013079 173 VDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SP 235 (450)
Q Consensus 173 v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~ 235 (450)
++. .|+++|++++.++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+ +.
T Consensus 140 ~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 219 (399)
T 1c7n_A 140 CELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF 219 (399)
T ss_dssp CCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG
T ss_pred cccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccH
Confidence 765 37999999993378999999999999999988 99999999999999999999955432 12
Q ss_pred cC-----CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHH
Q 013079 236 AR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKE 308 (450)
Q Consensus 236 ~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~ 308 (450)
.. .+.++++.|+||.+|++|.|+ ||++.+ +++++.+............+.+.+.++..++.. .+++....++
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 298 (399)
T 1c7n_A 220 QSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKV 298 (399)
T ss_dssp GGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHcCccccCcEEEEEeChhhccccchhe-EEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHH
Confidence 22 246799999999999899998 999886 678888876554221112233333333333332 2345555666
Q ss_pred HHHHHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-ccccccccccc
Q 013079 309 HCHRALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVS 384 (450)
Q Consensus 309 ~~~~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~-~~~~~g~i~vs 384 (450)
+.++++++.+.|++ ++ ..+..| ..+.++++.++.. .....+.+.|. . .| +.+.
T Consensus 299 ~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~ 355 (399)
T 1c7n_A 299 IDKNQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIHK---AQ-IFFD 355 (399)
T ss_dssp HHHHHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHHT---TC-CCCE
T ss_pred HHHHHHHHHHHHHhhCCCCeEecC-------------------CceEEEEEEcccCCCCHHHHHHHHHHh---CC-EEEe
Confidence 78889999999987 53 333222 1344667888631 12456777764 3 23 5666
Q ss_pred cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013079 385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM 442 (450)
Q Consensus 385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 442 (450)
.|+.+.. ..++.||||++ .. ++++.++.|.++++++
T Consensus 356 ~g~~~~~---------------------~~~~~iRis~~-~~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 356 EGYIFGD---------------------GGIGFERINLA-APSSVIQESLERLNKALKDL 393 (399)
T ss_dssp EGGGGCG---------------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCC---------------------CCCCeEEEEec-cCHHHHHHHHHHHHHHHHHH
Confidence 6644321 01478999999 64 2333344455555444
No 66
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.96 E-value=9.7e-29 Score=250.57 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhc--cCCC--EEEEeCCCchhHHHHHHHhCCCccCe
Q 013079 101 VLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNI 168 (450)
Q Consensus 101 ~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~--~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~ 168 (450)
..++++.+|++++ .+.+++|+| |++|+++++.+++ ++|| +|+++.|+|+++...+. ..|.
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g---~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~ 155 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVG---SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQ 155 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTC
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCC---HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCC
Confidence 4678888888876 467999999 9999999999998 9999 99999999999988775 2577
Q ss_pred eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---c-
Q 013079 169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P- 235 (450)
Q Consensus 169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~- 235 (450)
++.+++.+ |+++|+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. +
T Consensus 156 ~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 235 (437)
T 3g0t_A 156 KFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSH 235 (437)
T ss_dssp CCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCS
T ss_pred EEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCc
Confidence 77777653 7899999985578999999999999999987 777899999999999999999543321 1
Q ss_pred -------c----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-H-----------------HHHHhhhhhhccCCC
Q 013079 236 -------A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVN-S-----------------MMDLHQGALMLLGPT 286 (450)
Q Consensus 236 -------~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~-----------------l~~~~~~~~~~~g~~ 286 (450)
. ..+.++++.|+||.++++|.|+ ||++.++++++ . +..... ......+.
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 313 (437)
T 3g0t_A 236 PGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI-GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY-ALSSGATH 313 (437)
T ss_dssp TTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH-HHHSSSCH
T ss_pred ccccchhhccCCCCCcEEEEEcCccCCCCcccee-EEEEECHHHhhhhhhcccccccccchhHHHHHHHHh-hhcCCCCH
Confidence 1 1467899999999999999998 99999988887 6 543332 11123334
Q ss_pred chHHHHHHHHccCCc----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079 287 MNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362 (450)
Q Consensus 287 ~~~~~a~~~~~~~~~----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 362 (450)
+.+.++..++..... +..+.+++.++++.+.+.|++++..+..+.-...|. ..|.++++.+++.
T Consensus 314 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 381 (437)
T 3g0t_A 314 SAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPL------------ADGFYFTVGYKGM 381 (437)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEEC------------CSSSEEEEEETTC
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCC------------ceeEEEEEecCCC
Confidence 444444444433222 677778889999999999998865554110000010 2466899999732
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
....+.+.|... | +.+..|+.+.. ..++.||||++ .. +++.++.+.++|.++
T Consensus 382 -~~~~l~~~L~~~---g-i~v~~~~~~~~---------------------~~~~~iRis~~-~~-~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 382 -DSSKLIEKFVRY---G-MCAITLKTTGS---------------------KRNEAMRICTS-LL-PESQFPDLEKRLQML 433 (437)
T ss_dssp -CHHHHHHHHHHT---T-EECEESTTTTC---------------------CCTTCEEEECS-SS-CGGGHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHc---C-eEEeeccccCC---------------------CCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence 255677777642 3 56665544311 01377999999 64 334445555555544
No 67
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.96 E-value=9e-28 Score=243.08 Aligned_cols=312 Identities=15% Similarity=0.147 Sum_probs=217.0
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEE
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHV 144 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~V 144 (450)
+++.+.+... + ...+.|+.. ....++++.+|+++ | .+ .+++|+| |++|+++++++++++||+|
T Consensus 57 ~a~~~~~~~~--~-~~~~~y~~~--~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~V 128 (429)
T 1yiz_A 57 NALAAAANSP--D-PLANQYTRG--FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVG---AYEALYATIQGHVDEGDEV 128 (429)
T ss_dssp HHHHHHHTCS--C-GGGGSCCCS--SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHhcc--c-cCccCCCCC--CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecC---hHHHHHHHHHHhcCCCCEE
Confidence 5555555431 1 122345432 22456677777664 5 35 8999999 9999999999999999999
Q ss_pred EEeCCCchhHHHHHHHhCCCccCeeEEEeCC---------------CCHHHHHHhhhcCCceEEEEecCCCCcccccC--
Q 013079 145 VAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN-- 207 (450)
Q Consensus 145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~-- 207 (450)
+++.|.|+++...+. ..|.++..++. .|+++|++++ ++++++|++++|+||||.+.+
T Consensus 129 l~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~ 202 (429)
T 1yiz_A 129 IIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRA 202 (429)
T ss_dssp EEEESCCTTHHHHHH-----HTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHH
T ss_pred EEcCCCchhHHHHHH-----HcCCEEEEEeCCcccccccccccCcccCHHHHHHHh-ccCceEEEECCCCCCCCccCCHH
Confidence 999999999988775 25777766653 3789999999 788999999999999999985
Q ss_pred -HHHHHHHHHhcCCEEEEeCCCCCCCC------Ccc----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh
Q 013079 208 -IPELSRLAHDKGVTVVVDNTFSPLVL------SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 276 (450)
Q Consensus 208 -l~~I~~la~~~gi~livD~~~~~~~~------~~~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~ 276 (450)
+++|+++|+++|+++|+|++|+.+.+ +.. ..++|+++.|+||.++++|+|+ ||+++++++++.+....
T Consensus 203 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~ 281 (429)
T 1yiz_A 203 ELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI-GWAYGPEALLKNLQMVH 281 (429)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcce-EEEEeCHHHHHHHHHHH
Confidence 89999999999999999999965432 111 2368999999999999999998 99999999988887654
Q ss_pred hhhhhccCCCchHHHHHHHHcc--------CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccC
Q 013079 277 QGALMLLGPTMNPKVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 348 (450)
Q Consensus 277 ~~~~~~~g~~~~~~~a~~~~~~--------~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~ 348 (450)
. .....++.+.+.++..++.. .+++....+++.++++.+.+.|++++..+..|.
T Consensus 282 ~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 343 (429)
T 1yiz_A 282 Q-NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ----------------- 343 (429)
T ss_dssp H-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-----------------
T ss_pred h-hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-----------------
Confidence 3 11233344444444444443 334556666778899999999988776654332
Q ss_pred CCcCcEEEEEeCCH------------HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079 349 YGFGGLLCLDMETE------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 416 (450)
Q Consensus 349 ~g~g~~~~~~l~~~------------~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 416 (450)
.|.++++.++.. .....+.+.|.. ..| +.+..|+.+.... . .+..++
T Consensus 344 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~g-v~v~~g~~f~~~~---~-------------~~~~~~ 402 (429)
T 1yiz_A 344 --GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTK--SVG-LQGIPPSAFYSEP---N-------------KHLGED 402 (429)
T ss_dssp --BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHH--HTS-EECBCGGGGSCGG---G-------------GGGTTT
T ss_pred --cceEEEEEcccccccccccccccCCCHHHHHHHHHH--hCC-EEEeCchHhCCCc---c-------------cCCCCC
Confidence 466899998742 235567666531 123 5555554321100 0 011257
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 417 ~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.||||++ . +++.++.+.+.|.++
T Consensus 403 ~iRis~~-~--~~e~i~~~l~~l~~~ 425 (429)
T 1yiz_A 403 FVRYCFF-K--KDENLQKAAEILRKW 425 (429)
T ss_dssp EEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred eEEEEec-C--CHHHHHHHHHHHHHh
Confidence 8999999 5 455566666666554
No 68
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=2.9e-28 Score=242.12 Aligned_cols=290 Identities=12% Similarity=0.115 Sum_probs=204.6
Q ss_pred ChhHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 98 NPTVLNLSRQMAALEGTEA----AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~----~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
.+..+++++.+++++|.+. +++|+| |++|++ ++..++++||+|+++.+.|++.. +...... .|.++.++
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g---~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v 106 (384)
T 3zrp_A 34 VEALAYSLKGLRYVMGASKNYQPLIIPGG---GTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVL 106 (384)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSEEEEEESC---HHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEcCC---cHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEe
Confidence 5678999999999999754 899999 999999 99989999999999999997732 1122222 68899998
Q ss_pred CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079 174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHS 246 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S 246 (450)
+.+ |+++|++++...++++|++++++||||.+.|+++|.++|+++|+++|+|++++ ....+....++|+++.|
T Consensus 107 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 186 (384)
T 3zrp_A 107 RPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTA 186 (384)
T ss_dssp CCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEec
Confidence 875 89999999933389999999999999999999999999999999999999983 33344455689999999
Q ss_pred CCCccc-cCccceEEEEEcCHHHHHHH-------------HHHhhhhh-------hccCC-CchHHHHH-HHHccC--Cc
Q 013079 247 ISKFIS-GGADIIAGAVCGPANLVNSM-------------MDLHQGAL-------MLLGP-TMNPKVAF-ELSERI--PH 301 (450)
Q Consensus 247 ~sK~~g-~~g~~igG~l~~~~~~~~~l-------------~~~~~~~~-------~~~g~-~~~~~~a~-~~~~~~--~~ 301 (450)
+||+++ ++| + |+++.++++++.+ ........ ...|. ......+. .++... ..
T Consensus 187 ~~K~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~ 263 (384)
T 3zrp_A 187 SQKALGSAAG--L-GLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEG 263 (384)
T ss_dssp TTSTTCCCSS--E-EEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CcccccCCCc--e-EEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcC
Confidence 999885 444 5 9999998887776 22222110 01122 22222221 222211 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013079 302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 381 (450)
Q Consensus 302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i 381 (450)
+....+++.++++++.+.|++++.++..|. + ....+++++|.+++ .....+.+.|... | +
T Consensus 264 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~---g-i 323 (384)
T 3zrp_A 264 IENRIKRHTMVASAIRAGLEALGLEIVARR----P-----------ESYSNTVTGVILKV-ADPQKVLAGTVNE---G-V 323 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSCSS----G-----------GGBCSSEEEEECSS-SCHHHHHHHHHTT---T-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEccCc----c-----------cccCccEEEEECCC-CCHHHHHHHHHHC---C-E
Confidence 556667788899999999998865543322 0 01246688999986 3356777777652 3 5
Q ss_pred ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.++.|..+ . .+.||||++ ...+++.++.+.++|.++
T Consensus 324 ~v~~g~~~----------------------~--~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 324 EFAPGVHP----------------------A--FKYFRIGHM-GWVTPNDAIIAISVIERT 359 (384)
T ss_dssp CCEECCCT----------------------T--CCEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCC----------------------C--cCEEEEecc-ccCCHHHHHHHHHHHHHH
Confidence 55555311 0 168999999 656666666655555543
No 69
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.96 E-value=3.1e-28 Score=246.08 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=211.3
Q ss_pred ccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 166 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~ 166 (450)
+.|+....+..+++++.+++.++ .+.++||+| +++|++++++.++++||+|++..|.|+++...+. ..
T Consensus 92 ~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g---~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~ 163 (421)
T 3l8a_A 92 FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDG---VVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LN 163 (421)
T ss_dssp SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HT
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HC
Confidence 55666666777888888888877 356999999 9999999999999999999999999999888775 25
Q ss_pred CeeEEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079 167 NITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS- 234 (450)
Q Consensus 167 g~~v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~~- 234 (450)
|.++..++.+ |+++|++++.++++++|++++|+||+|.+ .++++|+++|+++|+++|+|++|+.+...
T Consensus 164 g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 243 (421)
T 3l8a_A 164 DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFG 243 (421)
T ss_dssp TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 7777777643 89999999933789999999999999998 57999999999999999999999655321
Q ss_pred -----ccC-----CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcH
Q 013079 235 -----PAR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHL 302 (450)
Q Consensus 235 -----~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l 302 (450)
... .+.++++.|+||.+|++|.++ |+++.+ +++.+.+...........++.+.+.++..++.. .+++
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~ 322 (421)
T 3l8a_A 244 NTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWL 322 (421)
T ss_dssp CCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHH
T ss_pred CCCccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHH
Confidence 111 256799999999999899998 898887 888888876554222123333444444444432 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccc
Q 013079 303 GLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGF 380 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~ 380 (450)
.+..+++.++++++.+.|+++ +..+..|. .+.++|++++.. .....+.+.|.. ..|
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~--~~g- 380 (421)
T 3l8a_A 323 EELKTVIEGNIKLVIKELEAKTKIKVMEPE-------------------GTYLVWLDFSAYAIAQPQLSEKLQN--EAK- 380 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCEEECCS-------------------BSSEEEEECGGGTCCTTHHHHHHHH--TTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEeCCC-------------------eeEEEEEeccccCCCHHHHHHHHHH--hCC-
Confidence 666677788999999999886 44554332 344667888631 124456666632 123
Q ss_pred cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
+.++.|+.+.. ..++.||||++ . +++.++.+.+.|.+
T Consensus 381 i~v~~g~~f~~---------------------~~~~~iRi~~~-~--~~~~i~~~l~~l~~ 417 (421)
T 3l8a_A 381 VVLNDGAHFGK---------------------EGKYFARLNVA-T--PKNTVQEALSRIIS 417 (421)
T ss_dssp EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred EEEECchhhCC---------------------CCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence 56666654311 11588999999 5 34444544444443
No 70
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.96 E-value=6.2e-28 Score=238.20 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=202.0
Q ss_pred CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.++...++++.+|++++. +.+++|+| |++|+++++..+ |+|+++.|+|+++...+. ..|.++.+++
T Consensus 59 ~~~~~~~l~~~la~~~~~~~~~i~~~~g---~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~ 126 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKLKDIGIVLGNG---ASEIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSY 126 (361)
T ss_dssp CCTTCHHHHHHHHHHHTCCSCEEEEESS---HHHHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred CCccHHHHHHHHHHHhCCCcceEEEcCC---HHHHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEee
Confidence 345568999999999984 57899999 999999999876 899999999999988775 3688888887
Q ss_pred CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC----Ccc----CC
Q 013079 175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL----SPA----RL 238 (450)
Q Consensus 175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~----~~~----~~ 238 (450)
.+ +++++++++ ++ +++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.. .+. ..
T Consensus 127 ~~~~~~~~~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 3ftb_A 127 LDENMCIDYEDIISKI-DD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNY 204 (361)
T ss_dssp CCTTSCCCHHHHHHHT-TT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTC
T ss_pred cCcccCCCHHHHHHhc-cC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccC
Confidence 54 678999999 66 999999999999999986 66788888899999999999954433 211 12
Q ss_pred CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079 239 GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 317 (450)
Q Consensus 239 g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 317 (450)
+.++++.|+||.+|++|.++ ||++ .++++++.+...... ...+.+.+.++..++...+++.++.+++.++++++.
T Consensus 205 ~~~i~~~s~sK~~~~~G~r~-g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 280 (361)
T 3ftb_A 205 SCLFIIRAMTKFFAMPGIRF-GYGITNNKEIAAKIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFI 280 (361)
T ss_dssp SSEEEEEESSSTTSCGGGCC-EEEEESCHHHHHHHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhcCCCCcce-eEEEeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998 8887 899998888755441 222223333333333322335566677788999999
Q ss_pred HHHHhCCC-e-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 318 RRMKKLGL-K-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 318 ~~L~~~~~-~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
+.|++++. . +. +. .|+++++.++. .....+.+.|... | +.++.|+.+.
T Consensus 281 ~~l~~~~~~~~~~-~~-------------------~~~~~~~~~~~-~~~~~l~~~l~~~---g-i~v~~g~~~~----- 330 (361)
T 3ftb_A 281 EELNKIGFIKRVF-SP-------------------HANFVLCRLEN-ISGEKLYDSLLKE---D-IVIRRCCNFI----- 330 (361)
T ss_dssp HHHHHSSSEEEEE-CC-------------------SSSEEEEEESS-SCHHHHHHHHHTT---T-EECEECTTST-----
T ss_pred HHHHhCCCCceec-CC-------------------CCeEEEEEcCC-CCHHHHHHHHHHC---C-eEEeeCccCC-----
Confidence 99998854 4 43 22 35688999985 2355677777652 3 5666664431
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+..++.||||++ . .+.++.|.++|+++
T Consensus 331 ----------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 331 ----------------GLDDSFVRFAIK-D---EKKNTKFLRALKGV 357 (361)
T ss_dssp ----------------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEEcC-C---HHHHHHHHHHHHHH
Confidence 123588999999 4 22344555555544
No 71
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.96 E-value=5.7e-28 Score=239.92 Aligned_cols=280 Identities=12% Similarity=0.067 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITT 170 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v 170 (450)
..++++.+|+++ | .+.+++|+| |++|++++++.++++ ||+|+++.|+|+++...+. ..|.++
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g---~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~ 132 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKENELISTLG---SREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKS 132 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESS---SHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECcC---cHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEE
Confidence 345666666654 5 367999999 999999999999999 9999999999999888775 368888
Q ss_pred EEeCCCCHH----HHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc--
Q 013079 171 TFVDISDHE----MVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-- 236 (450)
Q Consensus 171 ~~v~~~d~~----~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~-- 236 (450)
.+++.++.+ ++++++ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+. ..
T Consensus 133 ~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 211 (376)
T 3ezs_A 133 LLMPLTKENDFTPSLNEKE-LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEA 211 (376)
T ss_dssp EEEECCGGGTSCCCCCHHH-HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHH
T ss_pred EEcccCCCCCcchhHHhhh-ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHc
Confidence 888765221 566667 567999999999999999987 667888899999999999999654331 11
Q ss_pred -------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079 237 -------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 309 (450)
Q Consensus 237 -------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 309 (450)
..+.++++.|+||.+|++|.|+ ||++.++++++.+...... .....+.+.+.++..++...+++....+++
T Consensus 212 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 289 (376)
T 3ezs_A 212 CMLAGNEAFKNVLVIHSLSKRSSAPGLRS-GFIAGDSRLLEKYKAFRAY-LGYTSANAIQKASEAAWLDDRHAEFFRNIY 289 (376)
T ss_dssp HHHTTCTTCTTEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHTT-TCCCCCHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred cccccccccCcEEEEecchhccCCcccee-EEEeeCHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3578899999999999899998 9999999999888766541 112233344444444444444556666677
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079 310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
.++++.+.+.|+ ++. .| +.|.++++.+++ ...+.+.|.. +.| +.++.|+.+
T Consensus 290 ~~~~~~l~~~l~--~~~--~~-------------------~~~~~~~~~~~~---~~~~~~~l~~--~~g-i~v~~g~~~ 340 (376)
T 3ezs_A 290 ANNLKLARKIFK--NTL--IY-------------------PYSFYVYLPVQN---GENFAKTLYQ--NEG-IITLPALYL 340 (376)
T ss_dssp HHHHHHHHHHST--TCC--CC-------------------SBSSEEEEECSC---HHHHHHHHHH--HHC-CBCEEGGGG
T ss_pred HHHHHHHHHHhc--CCC--CC-------------------CcceEEEEECCC---HHHHHHHHHH--hCC-EEEeCcHHh
Confidence 888888888876 322 22 256789999973 3455555543 123 677767554
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
... ...++.||||++ . +++.++.+.++|.++
T Consensus 341 ~~~-------------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 341 GRN-------------------RIGADYVRLALV-Y--DTPLLEKPLEIIETY 371 (376)
T ss_dssp CST-------------------TTTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred CCC-------------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHHH
Confidence 310 112588999998 5 445555555555544
No 72
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.6e-28 Score=246.23 Aligned_cols=289 Identities=20% Similarity=0.218 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHh----CC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----GT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ |. +.+++|+| |++|+.+++++++++||+|+++.|.|+++...+. ..|.++..
T Consensus 97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~ 168 (447)
T 3b46_A 97 RPSLINSLIKLYSPIYNTELKAENVTVTTG---ANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVY 168 (447)
T ss_dssp CHHHHHHHHHHHTTTTTSCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEeCC---HHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEE
Confidence 456777777765 32 56999999 9999999999999999999999999999988775 25666665
Q ss_pred eCC-----------------CCHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079 173 VDI-----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV 232 (450)
Q Consensus 173 v~~-----------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~ 232 (450)
++. .|+++|++++ ++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|..+.
T Consensus 169 v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 247 (447)
T 3b46_A 169 VPINPPKELDQRNTRGEEWTIDFEQFEKAI-TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLY 247 (447)
T ss_dssp EEEECCGGGGTSCBCSTTSEECHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred EeCCCccccccccccccCcccCHHHHHHhh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 542 2789999999 78899999999999999996 58899999999999999999996543
Q ss_pred CC-----ccC-----CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc---
Q 013079 233 LS-----PAR-----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--- 298 (450)
Q Consensus 233 ~~-----~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--- 298 (450)
+. ... .+.|+++.|+||.++++|+|+ ||+++ ++++++.+...... ....++.+.+.++..++..
T Consensus 248 ~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ri-G~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~aL~~~~~ 325 (447)
T 3b46_A 248 FTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRI-GWVLSLNAELLSYAAKAHTR-ICFASPSPLQEACANSINDALK 325 (447)
T ss_dssp CSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCC-EEEECSCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhh-EEEEeCCHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhCCcc
Confidence 31 122 268999999999999999998 99999 99998888765431 1233444444444434432
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---------------H
Q 013079 299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---------------E 363 (450)
Q Consensus 299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---------------~ 363 (450)
..++.+..+++.++++.+.+.|++++..+..|. .|.+++++++.. .
T Consensus 326 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~ 386 (447)
T 3b46_A 326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAPE-------------------GTYFVLVDFSKVKIPEDYPYPEEILNKG 386 (447)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECTTCCCCTTCCCCGGGSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecccccCccccccccccccCC
Confidence 233555667788999999999988776654442 466889988631 2
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
....|...|.. ..| +.+..|+.+... + . .+..++.||||++ . .++.++...+.|.+
T Consensus 387 ~~~~~~~~l~~--~~g-V~v~pg~~f~~~--~-~-------------~~~~~~~iRls~~-~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 387 KDFRISHWLIN--ELG-VVAIPPTEFYIK--E-H-------------EKAAENLLRFAVC-K--DDAYLENAVERLKL 442 (447)
T ss_dssp HHHHHHHHHHH--HTC-EECBCGGGGSCG--G-G-------------GGGGTTEEEEECC-S--CHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHH--hCC-EEEECchHhCCC--C-c-------------cCCCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence 34567766542 123 555555432210 0 0 0011578999999 6 34444444444444
No 73
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=1.6e-27 Score=239.73 Aligned_cols=315 Identities=14% Similarity=0.126 Sum_probs=221.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG 153 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~ 153 (450)
+++.+.++. +++....+.+.....+..+++++.+++++|.+..+++++ |++|+..++++++++||.|+++.+.|++
T Consensus 80 ~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~s---Gt~a~~~~l~~~~~~gd~Vl~~~~~~~~ 155 (409)
T 3kki_A 80 ARLAKSLLE-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQS---GWNANVGLLQTICQPNTNVYIDFFAHMS 155 (409)
T ss_dssp HHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTSCHH
T ss_pred HHHHHHHHH-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecc---hHHHHHHHHHHhcCCCCEEEECCCcCHH
Confidence 556665543 333222222222234566789999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079 154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~ 233 (450)
+...+. ..|.++..++..|+++|++++...++++|++++++||||.+.|+++|.++|+++|+++|+|++|+...+
T Consensus 156 ~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~ 230 (409)
T 3kki_A 156 LWEGAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTH 230 (409)
T ss_dssp HHHHHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred HHHHHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 888775 357888888888999999999434689999999999999999999999999999999999999954221
Q ss_pred Cc--------cC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHccCCcH
Q 013079 234 SP--------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHL 302 (450)
Q Consensus 234 ~~--------~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l 302 (450)
.+ .. .++|+++.|+||.++++ ||++++++++++.+..............+...++. .++...+..
T Consensus 231 g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~ 306 (409)
T 3kki_A 231 GPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESA 306 (409)
T ss_dssp SGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcC
Confidence 10 11 15789999999999976 39999988887776654332211122222122122 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079 303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 382 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~ 382 (450)
....+++.++++++.+.|++++..+. +.+.++++.++.......+.+.|... | +.
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~L~~~---G-v~ 361 (409)
T 3kki_A 307 DNRRQHLDRMARKLRIGLSQLGLTIR---------------------SESQIIGLETGDERNTEKVRDYLESN---G-VF 361 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCC---------------------CSSSEEEEEEESHHHHHHHHHHHHHT---T-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C-ce
Confidence 45556678889999999998765432 24568999998765567777777652 3 33
Q ss_pred cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079 383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV 447 (450)
Q Consensus 383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~ 447 (450)
++.+.. +.. ....+.|||+++ ...+++.++.+.++|.++.+..+
T Consensus 362 v~~~~~------~~~--------------~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~~~ 405 (409)
T 3kki_A 362 GSVFCR------PAT--------------SKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNYGD 405 (409)
T ss_dssp CEEECT------TSS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHSS
T ss_pred EeeeCC------CCc--------------CCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhcCC
Confidence 332211 100 112578999999 77777778887777776654443
No 74
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.96 E-value=7.9e-28 Score=242.21 Aligned_cols=297 Identities=20% Similarity=0.242 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
..++++.+|+++ | .+ .+++|+| |++|+.+++.+++++||+|+++.|+|+++...+. ..|.++.
T Consensus 64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g---~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~ 135 (411)
T 2o0r_A 64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVG---ATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRV 135 (411)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence 355666666664 5 34 7999999 9999999999999999999999999999887764 2577777
Q ss_pred EeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013079 172 FVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------ 234 (450)
Q Consensus 172 ~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------ 234 (450)
+++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+.
T Consensus 136 ~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 214 (411)
T 2o0r_A 136 TVPLVPDGRGFALDADALRRAV-TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLP 214 (411)
T ss_dssp EEECEEETTEEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC
T ss_pred EeeccccccCCCCCHHHHHHhh-ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC
Confidence 7654 3899999999 778999999999999999977 589999999999999999999554321
Q ss_pred ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHH
Q 013079 235 PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEH 309 (450)
Q Consensus 235 ~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~ 309 (450)
... .++|+++.|+||.+|++|+|+ ||++.++++++.+....... ....+.+.+.++..++... +++....+++
T Consensus 215 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 292 (411)
T 2o0r_A 215 LAGFDGMAERTITISSAAKMFNCTGWKI-GWACGPAELIAGVRAAKQYL-SYVGGAPFQPAVALALDTEDAWVAALRNSL 292 (411)
T ss_dssp GGGSTTTGGGEEEEEEHHHHTTCTTTCE-EEEECCHHHHHHHHHHHHHH-TSCCCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhccCCCCCEEEEeechhhcCCccceE-EEEeeCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCChHHHHHHHHHH
Confidence 112 367999999999999999998 99999999988887654421 1334445554444444332 3345556667
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccc
Q 013079 310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGY 387 (450)
Q Consensus 310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~ 387 (450)
.++++++.+.|++++..+..|. .|.++++.++.. .....+.+.|.. ..| +.+..|+
T Consensus 293 ~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~ 350 (411)
T 2o0r_A 293 RARRDRLAAGLTEIGFAVHDSY-------------------GTYFLCADPRPLGYDDSTEFCAALPE--KVG-VAAIPMS 350 (411)
T ss_dssp HHHHHHHHHHHHHHTCEECCCC-------------------BSSEEEEECGGGTCCCHHHHHHHHHH--HHS-EECEEGG
T ss_pred HHHHHHHHHHHHHcCCEecCCC-------------------eeEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEcChh
Confidence 8889999999988766554332 355889998641 124456665531 123 5666664
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.+......++. .. ....++.||||++ . +++.++.+.++|.++.
T Consensus 351 ~f~~~~~~~~~--------~~--~~~~~~~iRis~~-~--~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 351 AFCDPAAGQAS--------QQ--ADVWNHLVRFTFC-K--RDDTLDEAIRRLSVLA 393 (411)
T ss_dssp GGSCCC------------------CCGGGCEEEECC-S--CHHHHHHHHHHHGGGG
T ss_pred hhCCCcccccc--------cc--ccCCCCeEEEEec-C--CHHHHHHHHHHHHHHH
Confidence 43110000000 00 0112478999999 6 3555666666666543
No 75
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=4.1e-28 Score=245.49 Aligned_cols=292 Identities=15% Similarity=0.197 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHHh----C---C--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079 100 TVLNLSRQMAALE----G---T--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 170 (450)
Q Consensus 100 ~~~~l~~~iA~l~----g---~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v 170 (450)
...++++.+|+++ | . +.+++|+| |++|+++++.+++++||+|++..|+|+++...+. ..|.++
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~ 157 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVG---SQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANF 157 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEE
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEecc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEE
Confidence 3567788888877 7 2 46899999 9999999999999999999999999999988775 367777
Q ss_pred EEeCCC----CHHHHHHhhhc-------CCceEEE-EecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079 171 TFVDIS----DHEMVNSAIVQ-------GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS- 234 (450)
Q Consensus 171 ~~v~~~----d~~~l~~ai~~-------~~t~lv~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~- 234 (450)
..++.+ |+++|++++.. .++++|+ +++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.
T Consensus 158 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g 237 (425)
T 1vp4_A 158 VVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG 237 (425)
T ss_dssp EEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS
T ss_pred EEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC
Confidence 777653 89999998832 2789985 7899999999986 668999999999999999999654331
Q ss_pred -----ccC---CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHH
Q 013079 235 -----PAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLG 303 (450)
Q Consensus 235 -----~~~---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~ 303 (450)
... .+.++++.|+||+++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++... +++.
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~ 314 (425)
T 1vp4_A 238 ETVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLK 314 (425)
T ss_dssp CCCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTH
T ss_pred CCCcCHHHhCCCCCEEEEeccccccc-cccce-EEEeeCHHHHHHHHHHhhhh-cCCCCHHHHHHHHHHHhcCCHHHHHH
Confidence 111 257899999999999 99998 99999999988887655422 1233444444444444332 2344
Q ss_pred HHHHHHHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079 304 LRMKEHCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 378 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~ 378 (450)
...+++.++++.+.+.|+++ +..+..|. .|.++++.++.......+.+.|...
T Consensus 315 ~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~~--- 372 (425)
T 1vp4_A 315 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK--- 372 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEecCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---
Confidence 55566788889999999874 34443332 4668999997321234455555432
Q ss_pred cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHhhhc
Q 013079 379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~~~~ 445 (450)
| +.+..|+.+... +..++.||||++ .. +.++.++.|.+++.++.+.
T Consensus 373 g-i~v~~g~~f~~~-------------------~~~~~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 373 K-VFYVPGRVFKVY-------------------DEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp T-EECEEGGGGCTT-------------------CCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CEEECchhhcCC-------------------CCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2 566655432110 112578999999 63 3445556666666655443
No 76
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=5.4e-28 Score=239.34 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=199.2
Q ss_pred hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
+...++++.||++++. +.+++|+| +++++++++..+ +||+|++..|+|+++...+. ..|.++..++.+
T Consensus 59 ~~~~~l~~~la~~~~~~~~~v~~~~g---~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~ 128 (364)
T 1lc5_A 59 ADYFHLHQALARHHQVPASWILAGNG---ETESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLR 128 (364)
T ss_dssp TTCHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEECCC---HHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCC
Confidence 4568899999999986 46899999 999999999987 67999999999999988775 257788887764
Q ss_pred C------HHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC---Ccc----CCCC
Q 013079 177 D------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGA 240 (450)
Q Consensus 177 d------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~---~~~----~~g~ 240 (450)
. ++++.+.+ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|..+.. .+. ..+.
T Consensus 129 ~~~~~~~l~~~~~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 207 (364)
T 1lc5_A 129 EADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 207 (364)
T ss_dssp GGGTTCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred cccccchhHHHHHhc-cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence 2 35455666 578999999999999999998 89999999999999999999954432 222 2368
Q ss_pred eEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079 241 DVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 319 (450)
Q Consensus 241 di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 319 (450)
++++.|+||++|++|.|+ ||++ .++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.
T Consensus 208 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 283 (364)
T 1lc5_A 208 IWVLRSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQA 283 (364)
T ss_dssp EEEEEESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhcCCccce-EEEEECCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999899998 9998 999998888765431 22233333333333322233555666678888999999
Q ss_pred HHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079 320 MKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 398 (450)
Q Consensus 320 L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~ 398 (450)
|++++ ..+. |. .|+++++.++.. ...+.+.|... | +.+..|+.+.
T Consensus 284 L~~~~~~~~~-~~-------------------~g~~~~~~~~~~--~~~l~~~l~~~---g-i~v~~g~~~~-------- 329 (364)
T 1lc5_A 284 LCQLPLLTVY-PG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANYP-------- 329 (364)
T ss_dssp HHTSTTEEEC-CC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTST--------
T ss_pred HhcCCCCEEC-CC-------------------CCeEEEEECCCc--HHHHHHHHHHC---C-cEEeeCcccC--------
Confidence 98873 3432 22 356888988742 33466666542 3 5666554321
Q ss_pred cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+..++.||||++ . .+.++.+.++|+++
T Consensus 330 -------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 330 -------------GLDSRYYRVAIR-S---AAQNERLLAALRNV 356 (364)
T ss_dssp -------------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEEeC-C---HHHHHHHHHHHHHH
Confidence 112578999999 4 33344555555544
No 77
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.8e-28 Score=249.27 Aligned_cols=324 Identities=14% Similarity=0.093 Sum_probs=214.6
Q ss_pred HHHHHhhcCCCCC-------CC-CCccccCCCChhHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHh
Q 013079 74 ETMRRMFAGELGP-------DR-DFFIYSRHFNPTVLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQL 137 (450)
Q Consensus 74 ~~~~~~~~~~~~n-------~~-~~~~y~r~~~~~~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l 137 (450)
+.+.+.++..+.+ ++ +.+.++........++|+.||+++ +.+++++|+| |++|+++++.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G---~t~al~~~~~~l 126 (444)
T 3if2_A 50 ELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNG---SQNAFFYLFNLF 126 (444)
T ss_dssp HHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC---cHHHHHHHHHHH
Confidence 4555555544444 43 233344333445678888888886 3467999999 999999999999
Q ss_pred ccCCC--------------EEEEe-CCCchhHHHHHH--HhCCCccCeeEEEeCC----------CCHHHHHHh---hhc
Q 013079 138 CSSGG--------------HVVAA-RTLYGGTHALLT--HFFPRACNITTTFVDI----------SDHEMVNSA---IVQ 187 (450)
Q Consensus 138 ~~~gd--------------~Vi~~-~~~y~~~~~~~~--~~~~~~~g~~v~~v~~----------~d~~~l~~a---i~~ 187 (450)
+++|| +|+++ .|+|+++...+. ..+.. .|..+..++. .|+++|+++ + +
T Consensus 127 ~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~-~ 204 (444)
T 3if2_A 127 GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEALENLPALK-E 204 (444)
T ss_dssp SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH-T
T ss_pred hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhc-cCceEEecccccccCccccCCCHHHHHHHHHhc-C
Confidence 98887 78875 899998765321 01112 4666666552 389999988 5 6
Q ss_pred CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCC----CCC---ccCCCCeEEEeCCCCccccCccc
Q 013079 188 GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL----VLS---PARLGADVVVHSISKFISGGADI 257 (450)
Q Consensus 188 ~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~----~~~---~~~~g~di~~~S~sK~~g~~g~~ 257 (450)
+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+ .+. +...+.++++.|+||+ +++|.|
T Consensus 205 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r 283 (444)
T 3if2_A 205 GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMR 283 (444)
T ss_dssp TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGC
T ss_pred CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCc
Confidence 78999999999999999998 889999999999999999999532 111 1223688999999997 779999
Q ss_pred eEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH---HH-HHHHHHHHHHHHHHHHHh-CC---CeeeC
Q 013079 258 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKK-LG---LKVLY 329 (450)
Q Consensus 258 igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l---~~-~~~~~~~~~~~l~~~L~~-~~---~~v~~ 329 (450)
+ ||++.++++++.+....... ...++.+.+.++...+...... .. ..+.+.++++.+.+.|++ ++ ..+..
T Consensus 284 ~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 361 (444)
T 3if2_A 284 T-GIIVADAKVIEAVSAMNAVV-NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHK 361 (444)
T ss_dssp C-EEEECCHHHHHHHHHHHHHH-HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEEC
T ss_pred e-EEEEECHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEec
Confidence 8 99999999998887665522 2344555555554444433222 12 234467777788888866 33 23333
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHH
Q 013079 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 408 (450)
Q Consensus 330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~ 408 (450)
|. .|.++++.++. ......+...|... | +.++.|+.|.......+.
T Consensus 362 ~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~g~~~~~~~~~~~~---------- 408 (444)
T 3if2_A 362 PE-------------------GAIFLWLWFKDLPISTLDLYERLKAK---G-TLIVPSEYFFPGVDVSDY---------- 408 (444)
T ss_dssp CC-------------------BSSEEEEEETTCSSCHHHHHHHHHHT---T-EECEEGGGSCTTCCCTTC----------
T ss_pred CC-------------------ccEEEEEEcCCCCCCHHHHHHHHHHC---C-eEEecchhhcCCCCCccc----------
Confidence 32 56789999874 22356677777643 3 678888765432111000
Q ss_pred HhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079 409 ALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 409 ~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 442 (450)
....+.||||++ . +++++.++.|.+++.++
T Consensus 409 ---~~~~~~iRis~~-~~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 409 ---QHAHECIRMSIA-ADEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp ---SGGGSEEEEESS-SCHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCeEEEEEe-CCHHHHHHHHHHHHHHHHHH
Confidence 001378999999 7 12333344455555444
No 78
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.96 E-value=1.3e-27 Score=240.33 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ | .+.+++|+| |++|+.+++.+++++||+|+++.|+|+++...+. ..|.++.+
T Consensus 80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~ 151 (406)
T 1xi9_A 80 LPELRKAIVEREKRKNGVDITPDDVRVTAA---VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVE 151 (406)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEE
Confidence 456777777766 2 357999999 9999999999999999999999999999887774 25777777
Q ss_pred eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC
Q 013079 173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR 237 (450)
Q Consensus 173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~ 237 (450)
++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 152 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 230 (406)
T 1xi9_A 152 YRTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS 230 (406)
T ss_dssp EEEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHH
T ss_pred eecCCCcCCcCCHHHHHHhh-CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHH
Confidence 6542 899999999 778999999999999999976 999999999999999999999554321 112
Q ss_pred --CCC-eEEEeCCCCccccCccceEEEEE--cCH----HHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHH
Q 013079 238 --LGA-DVVVHSISKFISGGADIIAGAVC--GPA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMK 307 (450)
Q Consensus 238 --~g~-di~~~S~sK~~g~~g~~igG~l~--~~~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~ 307 (450)
.+. |+++.|+||+++++|+|+ ||++ .++ ++++.+....... ...+.+.+.++..++. ..+.+....+
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~ 307 (406)
T 1xi9_A 231 LTKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGPMDYLKEYMK 307 (406)
T ss_dssp HCSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred cCCCceEEEEeccccccCCCccEE-EEEEEecCchhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 256 899999999999899998 8888 888 8888887655421 2334444444444443 3333555566
Q ss_pred HHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhh-cccccccccc
Q 013079 308 EHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQ-NYAQFGFMAV 383 (450)
Q Consensus 308 ~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~-~~~~~g~i~v 383 (450)
++.++++.+.+.|++++ ..+..|. .|.++++.++. ......+.+.|. . .| +.+
T Consensus 308 ~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-i~v 364 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEIPGISTTKPQ-------------------GAFYIFPKIEVGPWKNDKEFVLDVLHN---AH-VLF 364 (406)
T ss_dssp HHHHHHHHHHHHHHTSTTEECCCCC-------------------BSSEECCEECSCSCSSHHHHHHHHHHH---HC-EEC
T ss_pred HHHHHHHHHHHHHHhCCCCeeecCC-------------------eeEEEEEecCccCCCCHHHHHHHHHHh---CC-EEE
Confidence 77888999999998873 3332221 24466667763 122456666654 3 23 555
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHH
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSR 441 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~ 441 (450)
..|+.+.. ..++.||||++ . +++++.++.|.+++++
T Consensus 365 ~~g~~f~~---------------------~~~~~lRis~~-~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 365 VHGSGFGE---------------------YGAGHFRAVFL-PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp EEGGGGCG---------------------GGTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred eCchhcCC---------------------CCCCEEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 55543210 01478999999 4 2233444445555444
No 79
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.96 E-value=1e-27 Score=240.77 Aligned_cols=289 Identities=16% Similarity=0.173 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 100 TVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 100 ~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
...++++.+|+++ | .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.
T Consensus 76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g---~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~ 147 (407)
T 2zc0_A 76 GIPELREELAAFLKKYDHLEVSPENIVITIG---GTGALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIE 147 (407)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcceEEEecC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEE
Confidence 4577888888887 7 357899999 9999999999999999999999999999887765 3677887
Q ss_pred EeCCC----CHHHHHHhhhc----C--CceEEE-EecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079 172 FVDIS----DHEMVNSAIVQ----G--RTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS--- 234 (450)
Q Consensus 172 ~v~~~----d~~~l~~ai~~----~--~t~lv~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~--- 234 (450)
+++.+ |+++|++++ + + ++++|+ +++|+||||.+.|++ +|+++|+++|+++|+|++|+.+.+.
T Consensus 148 ~v~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 226 (407)
T 2zc0_A 148 GVPVDNDGMRVDLLEEKI-KELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD 226 (407)
T ss_dssp EEEEETTEECHHHHHHHH-HHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS
T ss_pred EcccCCCCCCHHHHHHHH-HhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence 77653 899999998 4 4 788874 689999999999876 9999999999999999999554321
Q ss_pred ---ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC----CcHHH
Q 013079 235 ---PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGL 304 (450)
Q Consensus 235 ---~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~ 304 (450)
...+ +.++++.|+||+++ +|.|+ ||+++++++++.+....... ...++.+.+.++..++... .++..
T Consensus 227 ~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (407)
T 2zc0_A 227 IVPLKALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAEGEILKKVLMQKQPI-DFCAPAISQYIALEYLKRGYFEKYHLEG 303 (407)
T ss_dssp CCCGGGGCSSCCEEEEEESTTTTC-TTSCC-EEEECCHHHHHHHHHHHTTT-TSSSCHHHHHHHHHHHHTTHHHHHTTTT
T ss_pred CCChhhcCCCCCEEEEcccccccC-CCcce-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHcCCchHHHHHH
Confidence 1122 46789999999999 89997 99999999988887665422 1223344444444444433 23444
Q ss_pred HHHHHHHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079 305 RMKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 382 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~ 382 (450)
..+++.++++++.+.|+++ + ..+..|. .|.++++.++.......+.+.|... +| +.
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~--~g-i~ 361 (407)
T 2zc0_A 304 ALLGYKEKRDIMLKALENHLPNAEFTKPI-------------------AGMFVMFFLPEGADGISFANELMER--EG-VV 361 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCBCCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHH--TC-EE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEecCC-------------------CcEEEEEEcCCCCCHHHHHHHHHHh--CC-eE
Confidence 5566778888999999873 3 3333232 4568999997322245677776542 23 56
Q ss_pred cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079 383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 442 (450)
+..|+.+... +..++.||||++ . ++.++.++.|.++++++
T Consensus 362 v~~g~~~~~~-------------------~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 362 VVPGKPFYTD-------------------ESGKNAIRLNFS-RPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp CBCSGGGCSS-------------------SCCTTEEEEECS-SSCTTHHHHHHHHHHHHHHHH
T ss_pred EECchhccCC-------------------CCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence 6666432110 012578999999 5 44555666666666544
No 80
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.96 E-value=3.1e-28 Score=244.78 Aligned_cols=286 Identities=15% Similarity=0.118 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHh----CC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079 100 TVLNLSRQMAALE----GT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 170 (450)
Q Consensus 100 ~~~~l~~~iA~l~----g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v 170 (450)
...++++.||+++ |. +.+++|+| +++|+++++++++++||+|+++.|+|+++...+. ..|.++
T Consensus 86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~ 157 (404)
T 2o1b_A 86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG---TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKP 157 (404)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC---cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEE
Confidence 4567888888877 74 47899999 9999999999999999999999999999988775 257777
Q ss_pred EEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc
Q 013079 171 TFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA 236 (450)
Q Consensus 171 ~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~ 236 (450)
..++.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+ +..
T Consensus 158 ~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 236 (404)
T 2o1b_A 158 VPLNLEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL 236 (404)
T ss_dssp EEEECCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG
T ss_pred EEeccCcccCcCCHHHHHHhh-ccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh
Confidence 777642 678888888 678999999999999999985 78999999999999999999955432 222
Q ss_pred CC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079 237 RL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 311 (450)
Q Consensus 237 ~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 311 (450)
.+ +.++++.|+||++|++|+|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.+
T Consensus 237 ~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 314 (404)
T 2o1b_A 237 ASENGKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMIQALKKYQTHT-NAGMFGALQDAAIYALNHYDDFLEEQSNVFKT 314 (404)
T ss_dssp GSTTHHHHEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEecchhccCchhhe-EeEecCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 32 46899999999999899998 99999999988887655421 123333444444334333 2335555666788
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~ 391 (450)
+++.+.+.|++++..+..|. .|.++++.++.......+.+.|.. ..| +.+..|+.+..
T Consensus 315 ~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f~~ 372 (404)
T 2o1b_A 315 RRDRFEAMLAKADLPFVHAK-------------------GGIYVWLETPPGYDSEQFEQFLVQ--EKS-ILVAPGKPFGE 372 (404)
T ss_dssp HHHHHHHHHHHTTCCEECCC-------------------BSSEEEEECCTTCCHHHHHHHHHH--HHC-EECEESGGGCG
T ss_pred HHHHHHHHHHhcCCeecCCC-------------------cceEEEEeCCCCCCHHHHHHHHHH--HCC-EEEeCchhhCc
Confidence 89999999998866554332 345789998732123456665432 123 56665644311
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..++.||||++ . + ++.++.+.+.|.++
T Consensus 373 ---------------------~~~~~iRis~~-~-~-~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 373 ---------------------NGNRYVRISLA-L-D-DQKLDEAAIRLTEL 399 (404)
T ss_dssp ---------------------GGTTEEEEECC-S-C-TTHHHHHHHHHHGG
T ss_pred ---------------------CCCCeEEEEEc-C-C-HHHHHHHHHHHHHH
Confidence 01478999999 6 2 33344444444443
No 81
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=5.7e-28 Score=240.82 Aligned_cols=307 Identities=14% Similarity=0.122 Sum_probs=215.0
Q ss_pred CccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccC--
Q 013079 66 ATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSS-- 140 (450)
Q Consensus 66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~-- 140 (450)
++++.+. .+++.+.+...++++. .|. ...+..+++++.+++++|.+ .+++|+| |++|+.+++..+..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~la~~~~~~~~~i~~~~g---gt~a~~~~~~~~~~~~~ 111 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPG---LFK-GTKLLEEKAVALLGSLLNNKDAYGHIVSG---GTEANLMALRCIKNIWR 111 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGG---GBH-HHHHHHHHHHHHHHHHTTCTTCEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcc---cCh-hHHHHHHHHHHHHHHHhCCCCCCEEEecC---cHHHHHHHHHHHHHHHH
Confidence 3344444 3667776665555432 121 23456778999999999864 5699999 999999999988765
Q ss_pred -----------CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC-CceEEEEecCCCCcc
Q 013079 141 -----------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTL 203 (450)
Q Consensus 141 -----------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG 203 (450)
||+|+++.++|+++...+. ..|.++.+++.+ |+++|++++ ++ ++++|++++|+||||
T Consensus 112 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG 185 (397)
T 3f9t_A 112 EKRRKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDYDVDGIIGIAGTTELG 185 (397)
T ss_dssp HHHHTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHSCCCEEEEEBSCTTTC
T ss_pred hhhhhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhcCCeEEEEECCCCCCC
Confidence 8999999999999988775 358888888876 899999999 66 899999999999999
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCCCCCC----------------CCccCCCCeEEEeCCCCccccCccceEEEE-EcCH
Q 013079 204 AVANIPELSRLAHDKGVTVVVDNTFSPLV----------------LSPARLGADVVVHSISKFISGGADIIAGAV-CGPA 266 (450)
Q Consensus 204 ~v~~l~~I~~la~~~gi~livD~~~~~~~----------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~ 266 (450)
.+.|+++|.++|+++|+++|+|++|+.+. ++... ++|+++.|+||+++++ .++ |++ +.++
T Consensus 186 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~-g~~~~~~~ 262 (397)
T 3f9t_A 186 TIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPS-GGILFKDI 262 (397)
T ss_dssp CBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSC-EEEEESSG
T ss_pred CCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCc-eEEEEeCH
Confidence 99999999999999999999999994321 12223 7899999999988644 456 555 5555
Q ss_pred HHHHHHHHHhhhhhhc------cCCC--chHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCc
Q 013079 267 NLVNSMMDLHQGALML------LGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 336 (450)
Q Consensus 267 ~~~~~l~~~~~~~~~~------~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p 336 (450)
.+.+.+..... .... .+.. ......+.++. ....+....++..++++++.+.|++++..+..+.
T Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----- 336 (397)
T 3f9t_A 263 GYKRYLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP----- 336 (397)
T ss_dssp GGGGGTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-----
T ss_pred HHHHhhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCC-----
Confidence 55544321111 1000 0111 12222222222 2334556677778899999999998865543332
Q ss_pred hhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079 337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 416 (450)
Q Consensus 337 ~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 416 (450)
.+++++|.++. ...+.+.|... | +.++.|+. ++
T Consensus 337 --------------~~~~~~~~~~~---~~~~~~~l~~~---g-i~v~~~~~--------------------------~~ 369 (397)
T 3f9t_A 337 --------------ILNIVAIEDED---YKEVCKKLRDR---G-IYVSVCNC--------------------------VK 369 (397)
T ss_dssp --------------SSSEEEEECTT---HHHHHHHHHHT---T-CBCEECSS--------------------------SS
T ss_pred --------------CccEEEEEeCC---HHHHHHHHHhC---C-eEEeccCC--------------------------CC
Confidence 35688888876 34566666542 3 44444321 47
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 417 ~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.||||++ ...+++.++.+.++|.++
T Consensus 370 ~~Ri~~~-~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 370 ALRIVVM-PHIKREHIDNFIEILNSI 394 (397)
T ss_dssp EEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEc-CCCCHHHHHHHHHHHHHh
Confidence 8999999 877888888888887765
No 82
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=1.7e-27 Score=241.04 Aligned_cols=293 Identities=15% Similarity=0.150 Sum_probs=204.7
Q ss_pred CCCChh-HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCC
Q 013079 95 RHFNPT-VLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163 (450)
Q Consensus 95 r~~~~~-~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~ 163 (450)
++..+. ..++++.+|++++ .+.+++|+| +++++.+++++++++||+|+++.|+|+++...+. .
T Consensus 78 ~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G---~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~---~ 151 (428)
T 1iay_A 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG---ATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR---W 151 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH---HHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT---T
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC---hHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHH---H
Confidence 344443 6788888888875 467899999 9999999999999999999999999999865431 1
Q ss_pred CccCeeEEEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079 164 RACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 164 ~~~g~~v~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~ 228 (450)
..|.++..++.+ |++++++++.. .++++|++++|+||||.+.| +++|+++|+++|+++|+|++|
T Consensus 152 -~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~ 230 (428)
T 1iay_A 152 -RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIY 230 (428)
T ss_dssp -TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTT
T ss_pred -hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccc
Confidence 268888888753 78999988832 37899999999999999999 999999999999999999999
Q ss_pred CCCCCC------ccCC--C-------Ce--EEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHH
Q 013079 229 SPLVLS------PARL--G-------AD--VVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPK 290 (450)
Q Consensus 229 ~~~~~~------~~~~--g-------~d--i~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~ 290 (450)
..+.+. ...+ . .| +++.|+||.+|++|.|+ |+++. ++++++.+..... ....+.+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 306 (428)
T 1iay_A 231 AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS---FGLVSTQTQY 306 (428)
T ss_dssp GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT---TSCCCHHHHH
T ss_pred cccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceE-EEEEeCCHHHHHHHHHHHh---cccCCHHHHH
Confidence 553321 1111 1 45 89999999999999998 88887 6778887765433 1223333343
Q ss_pred HHHHHHccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH----
Q 013079 291 VAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---- 362 (450)
Q Consensus 291 ~a~~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---- 362 (450)
++..++.... ++.+..+++.++++++.+.|++++..+..| ..|.++++.++..
T Consensus 307 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~ 367 (428)
T 1iay_A 307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN-------------------NAGLFCWMDLRPLLRES 367 (428)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-------------------SSSSEEEEECGGGCSSS
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-------------------CeeEEEEEechhhcCCC
Confidence 3333333222 234455567888999999999876544322 1466889998742
Q ss_pred --HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 363 --EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 363 --~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
.....+.+.|... +| +.+..|+.+.. ..++.||||++ .. +++.++.+.++|.
T Consensus 368 ~~~~~~~l~~~l~~~--~g-i~v~~~~~~~~---------------------~~~~~iRis~~-~~-~~e~i~~~~~~l~ 421 (428)
T 1iay_A 368 TFDSEMSLWRVIIND--VK-LNVSPGSSFEC---------------------QEPGWFRVCFA-NM-DDGTVDIALARIR 421 (428)
T ss_dssp SHHHHHHHHHHHHHT--SC-EECEEGGGGTC---------------------SSSSEEEEECS-SS-CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh--CC-EEEeCchhhCC---------------------CCCCEEEEEEe-cC-CHHHHHHHHHHHH
Confidence 2345677776531 23 55555533211 01478999999 53 4455566666665
Q ss_pred Hhh
Q 013079 441 RMQ 443 (450)
Q Consensus 441 ~~~ 443 (450)
++.
T Consensus 422 ~~l 424 (428)
T 1iay_A 422 RFV 424 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 83
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=2.2e-27 Score=240.16 Aligned_cols=288 Identities=18% Similarity=0.180 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHHHhCC-----------CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079 99 PTVLNLSRQMAALEGT-----------EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 167 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~-----------~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 167 (450)
+.++.+.+.+++..|. +.+++|+| +++|+++++.+++++||+|+++.|+|+++...+. ..|
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g 153 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSG---SQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLG 153 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGT
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcC
Confidence 3445555555555563 36899999 9999999999999999999999999999887764 367
Q ss_pred eeEEEeCCC----CHHHHHHhhhc-----------CCceEEEE-ecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCC
Q 013079 168 ITTTFVDIS----DHEMVNSAIVQ-----------GRTKVLYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 168 ~~v~~v~~~----d~~~l~~ai~~-----------~~t~lv~i-~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~ 228 (450)
.++..++.+ |+++|++++.. +++++|++ ++||||||.+.+.+ +|+++|+++|+++|+|++|
T Consensus 154 ~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 154 CNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp CEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 788777653 88999998831 46888877 68999999998755 9999999999999999999
Q ss_pred CCCCCC------ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC
Q 013079 229 SPLVLS------PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 299 (450)
Q Consensus 229 ~~~~~~------~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 299 (450)
+.+.+. ...+ +.++++.|+||.++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++...
T Consensus 234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRi-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~ 310 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRI-GFLTGPKPLIERVILHIQVS-TLHPSTFNQLMISQLLHEW 310 (425)
T ss_dssp GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCC-EEEEEEHHHHHHHHHHHHTT-TCSSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCCCCCEEEEccchhhcc-Cccce-EEEecCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Confidence 544321 1222 56799999999998 99998 99999999988887655421 1233334444443333321
Q ss_pred ------CcHHHHHHHHHHHHHHHHHHHHhC--CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH-HH
Q 013079 300 ------PHLGLRMKEHCHRALIFARRMKKL--GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LM 369 (450)
Q Consensus 300 ------~~l~~~~~~~~~~~~~l~~~L~~~--~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~-~~ 369 (450)
+++....+++.++++.+.+.|+++ +. .+..|. .|.++++.++....... +.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~-------------------~g~~~~~~~~~~~~~~~~~~ 371 (425)
T 2r2n_A 311 GEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA-------------------AGMFLWIKVKGINDVKELIE 371 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS-------------------BSSEEEEEETTCSCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC-------------------ceEEEEEEeCCCCCHHHHHH
Confidence 234445556788889999999874 33 233332 56789999974211223 34
Q ss_pred HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
+.+.. .| +.+..|+.+.... +...+.||||++ .. .++.++.+.+.|.
T Consensus 372 ~~l~~---~g-v~v~pg~~f~~~~------------------~~~~~~iRis~~-~~-~~~~i~~~~~~l~ 418 (425)
T 2r2n_A 372 EKAVK---MG-VLMLPGNAFYVDS------------------SAPSPYLRASFS-SA-SPEQMDVAFQVLA 418 (425)
T ss_dssp THHHH---TT-EECEEGGGGSSST------------------TSCCCEEEEECS-SC-CHHHHHHHHHHHH
T ss_pred HHHHH---CC-cEEechhhhcCCC------------------CCCCCEEEEEeC-CC-CHHHHHHHHHHHH
Confidence 44443 23 5666665432100 012478999998 54 3333444444443
No 84
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.96 E-value=9.4e-28 Score=240.43 Aligned_cols=290 Identities=18% Similarity=0.204 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
+...++++.+|+++|. +.+++|+| +++|+++++.+++++||+|++..|.|+++...+. ..|.++..++.+
T Consensus 74 ~~~~~l~~~la~~~g~~~~~v~~~~g---~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~ 145 (397)
T 2zyj_A 74 EGYAPLRAFVAEWIGVRPEEVLITTG---SQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAG 145 (397)
T ss_dssp TCCHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCChhhEEEecc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcC
Confidence 3467899999999985 56899999 9999999999999999999999999999988775 367777777653
Q ss_pred ----CHHHHHHhhhcCCceEEE-EecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccCC----
Q 013079 177 ----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL---- 238 (450)
Q Consensus 177 ----d~~~l~~ai~~~~t~lv~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~~---- 238 (450)
|+++|++++.+.++++|+ +++|+||||.+.+.+ +|+++|+++|+++|+|++|+.+.+. ...+
T Consensus 146 ~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 225 (397)
T 2zyj_A 146 EEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA 225 (397)
T ss_dssp TTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc
Confidence 899999999334788875 689999999998754 8999999999999999999554321 1222
Q ss_pred --CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC--CcHHHHHHHHHHHHH
Q 013079 239 --GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRAL 314 (450)
Q Consensus 239 --g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~ 314 (450)
+.++++.|+||+++ +|.|+ ||++.++++++.+....... ...++.+.+.++..++... +++....+++.++++
T Consensus 226 ~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (397)
T 2zyj_A 226 GYPGVIYLGSFSKVLS-PGLRV-AFAVAHPEALQKLVQAKQGA-DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQ 302 (397)
T ss_dssp TCCCEEEEEESTTTTC-GGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeccccccc-cccee-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34589999999999 89998 99999999988887654422 1223344444444444433 234555566788889
Q ss_pred HHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079 315 IFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 315 ~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~ 391 (450)
.+.+.|+++ +..+..|. .|.++++.++.......+.+.|... | +.+..|+.+..
T Consensus 303 ~l~~~L~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f~~ 359 (397)
T 2zyj_A 303 AMLHALDREVPKEVRYTRPK-------------------GGMFVWMELPKGLSAEGLFRRALEE---N-VAFVPGGPFFA 359 (397)
T ss_dssp HHHHHHHHHSCTTSEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEEEESGGGCT
T ss_pred HHHHHHHHHCCCCeEEccCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CEEechHHhcC
Confidence 999999874 34543332 4668999997322245677766542 3 56655543211
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 442 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 442 (450)
. +..++.||||++ .. ++++.++.|.++++++
T Consensus 360 ~-------------------~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 360 N-------------------GGGENTLRLSYA-TLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp T-------------------SCCTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred C-------------------CCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 0 112578999999 64 3344455555555444
No 85
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.96 E-value=1.1e-27 Score=237.63 Aligned_cols=273 Identities=15% Similarity=0.212 Sum_probs=201.5
Q ss_pred HHHHHHHHHH------hC--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 102 LNLSRQMAAL------EG--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 102 ~~l~~~iA~l------~g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
.++++.+|++ .+ .+.+++|+| +++++++++.+++++||+|+++.|+|+++...+. ..|.++.++
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G---~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v 143 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANG---SNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAV 143 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEE
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCC---hHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEe
Confidence 5788888888 34 356899999 9999999999999999999999999999887764 257777777
Q ss_pred CCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--CccC----CC-C
Q 013079 174 DIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPAR----LG-A 240 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~~----~g-~ 240 (450)
+.+ |++++++++ ++ ++++|++++|+||||.+.|++++.++|+.+++++|+|++|+.+.. +... .+ .
T Consensus 144 ~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (369)
T 3cq5_A 144 SRGADFRIDMDVALEEI-RAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTK 222 (369)
T ss_dssp ECCTTSSCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTT
T ss_pred cCCcCCCCCHHHHHHHh-hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCC
Confidence 643 789999998 55 899999999999999999999999999999999999999954442 2222 35 7
Q ss_pred eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 320 (450)
Q Consensus 241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 320 (450)
++++.|+||++|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|
T Consensus 223 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 298 (369)
T 3cq5_A 223 LVVSRTMSKAFDFAGGRL-GYFVANPAFIDAVMLVRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARL 298 (369)
T ss_dssp EEEEEESSSTTSCGGGCC-EEEEECTHHHHHHHTTSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEEEechHhcCCcccce-EEEEeCHHHHHHHHHcCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999889998 9999998888877654431 223333333343344333345556667788899999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079 321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 400 (450)
Q Consensus 321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~ 400 (450)
++.+..+. |. .|+++++.++. ....+.+.|.. .| +.+..|
T Consensus 299 ~~~g~~~~-~~-------------------~~~~~~~~~~~--~~~~l~~~l~~---~g-i~v~~~-------------- 338 (369)
T 3cq5_A 299 EELGYAVV-PS-------------------ESNFVFFGDFS--DQHAAWQAFLD---RG-VLIRDV-------------- 338 (369)
T ss_dssp HHHTCEEE-CC-------------------SSSEEEEECCS--SHHHHHHHHHH---TT-EECBCC--------------
T ss_pred HhCCCEEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHH---CC-EEEEEC--------------
Confidence 88666554 32 35688998871 24556666653 23 444433
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
+ .++.+|||++ . ++.++.+.++|.++.
T Consensus 339 -----------~-~~~~iRis~~-~---~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 339 -----------G-IAGHLRTTIG-V---PEENDAFLDAAAEII 365 (369)
T ss_dssp -----------S-CTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred -----------C-CCCeEEEEeC-C---HHHHHHHHHHHHHHH
Confidence 0 1468999999 3 344566666666543
No 86
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=1.4e-27 Score=235.02 Aligned_cols=279 Identities=15% Similarity=0.172 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-
Q 013079 99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 175 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~- 175 (450)
+...+++++||++++. +.+++|+| +++|++++++++. ||+|+++.|+|.++...+. ..|.++.+++.
T Consensus 50 ~~~~~lr~~la~~~~~~~~~i~~t~g---~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~ 119 (350)
T 3fkd_A 50 PDAGTLRQMLAKRNSVDNNAILVTNG---PTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSN 119 (350)
T ss_dssp TTCHHHHHHHHHHTTCCGGGEEEESH---HHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETT
T ss_pred CcHHHHHHHHHHHhCcCHHHEEEcCC---HHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecC
Confidence 3347899999999986 47999999 9999999999887 9999999999999987775 36889999887
Q ss_pred CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC-CEEEEeCCCCCCCCCc-------cCCCCeEEEeCC
Q 013079 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPLVLSP-------ARLGADVVVHSI 247 (450)
Q Consensus 176 ~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~~~~~-------~~~g~di~~~S~ 247 (450)
++.+. +..+++++|++++|+||||.+.|+++|.++++.++ .++|+|++|..+.... ...+.++++.|+
T Consensus 120 ~~~~~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~ 195 (350)
T 3fkd_A 120 EDIGE----ADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSF 195 (350)
T ss_dssp SCGGG----SCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEES
T ss_pred Ccccc----CccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecC
Confidence 44322 21268999999999999999999999999998875 7999999996554321 123577999999
Q ss_pred CCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-Ce
Q 013079 248 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LK 326 (450)
Q Consensus 248 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~ 326 (450)
||.++++|.|+ ||++.++++++.+...... ...+.+.+.++..++.....+.++++++.++++++.+.|++++ ..
T Consensus 196 sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 271 (350)
T 3fkd_A 196 SHAYGIPGLRI-GYIVANKDFMKRVAAFSTP---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE 271 (350)
T ss_dssp HHHHSCGGGCC-EEEECCHHHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE
T ss_pred chhccCcchhe-EeEEeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999998 9999999999888765441 2223334444444444433233344444588899999998874 34
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHH
Q 013079 327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 406 (450)
Q Consensus 327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~ 406 (450)
+ .|. .|+++++.++.. ....+.+.|.. ..| +.++.|+.+.
T Consensus 272 ~-~~~-------------------~~~~~~~~~~~~-~~~~l~~~L~~--~~g-i~v~~g~~f~---------------- 311 (350)
T 3fkd_A 272 V-HPS-------------------GTTFFLLRLKKG-TAAELKKYMLE--EYN-MLIRDASNFR---------------- 311 (350)
T ss_dssp E-CCC-------------------SSSEEEEEESSS-CHHHHHHHHHH--TTC-EECEECTTST----------------
T ss_pred E-CCC-------------------CCcEEEEECCCC-CHHHHHHHHHH--HCC-EEEEeCccCC----------------
Confidence 4 232 456888999843 35677777764 123 6777775541
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 407 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 407 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
+..++.||||++ . .+.++.|.++|+++.+
T Consensus 312 -----~~~~~~iRis~~-~---~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 312 -----GLDESYVRITTQ-R---PAQNQLFIKALETFLE 340 (350)
T ss_dssp -----TCCTTEEEEECC-C---HHHHHHHHHHHHHHHT
T ss_pred -----CCCCCEEEEEcC-C---HHHHHHHHHHHHHHHH
Confidence 122588999999 3 3345566666666543
No 87
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.1e-27 Score=237.95 Aligned_cols=283 Identities=15% Similarity=0.133 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 102 LNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 102 ~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
.++++.+|++++ .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.++
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~ 132 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPD---VVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFI 132 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEc
Confidence 445666666554 467999999 9999999999999999999999999999987775 257788888
Q ss_pred CCC---CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cC------
Q 013079 174 DIS---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------ 237 (450)
Q Consensus 174 ~~~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----~~------ 237 (450)
+.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.. ..
T Consensus 133 ~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (377)
T 3fdb_A 133 DATGGINLHDVEKGF-QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA 211 (377)
T ss_dssp ECTTSCCHHHHHHHH-HTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred cCCCCCCHHHHHHHh-ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC
Confidence 876 999999999 778999999999999999975 6678888999999999999995543321 11
Q ss_pred CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013079 238 LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 315 (450)
Q Consensus 238 ~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 315 (450)
.+.++++.|+||.+|++|.|+ ||++. ++++++.+..... ......+.+.+.++..++.. .+++..+.+++.+++++
T Consensus 212 ~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 289 (377)
T 3fdb_A 212 ASVCITITAPSKAWNIAGLKC-AQIIFSNPSDAEHWQQLSP-VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDF 289 (377)
T ss_dssp HHHEEEEECSTTTTTCGGGCC-EEEECCSHHHHHHHHHSCH-HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeChHhccCcchhh-eEEEeCCHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 145699999999999999998 87665 7888888876543 11123333444443344433 23356666778899999
Q ss_pred HHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccc
Q 013079 316 FARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 393 (450)
Q Consensus 316 l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~ 393 (450)
+.+.|++ + +..+..|. .+.++++.++.......+...+.. +.| +.+..|+.+...
T Consensus 290 l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~~~~~- 346 (377)
T 3fdb_A 290 LLHEIPKRIPGAKITPMQ-------------------ATYLMWIDFRDTTIEGSPSEFFIE--KAK-VAMNDGAWFGED- 346 (377)
T ss_dssp HHHHHHHHSTTCEECCCS-------------------BCSEEEEECTTSCCCSCHHHHHHH--HHC-EECEEGGGGCGG-
T ss_pred HHHHHHhhCCCceEecCC-------------------eeEEEEEECcccCCCHHHHHHHHH--hCC-EEecCChhccCC-
Confidence 9999988 4 44554332 345668888742001233333322 123 566666543221
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
.++.||||++ . .++.++.+.++|.+
T Consensus 347 --------------------~~~~~Ris~~-~--~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 347 --------------------GTGFCRLNFA-T--SREVLEEAIDRMAK 371 (377)
T ss_dssp --------------------GTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence 1578999999 6 34444444444444
No 88
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.96 E-value=4.6e-27 Score=234.75 Aligned_cols=269 Identities=18% Similarity=0.132 Sum_probs=187.6
Q ss_pred HHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 104 LSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 104 l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
+++.||+++ | .+.+++|+| +++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPS---VIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESC---HHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeec
Confidence 666666654 4 357999999 9999999999999999999999999999988775 25777777664
Q ss_pred --------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCC
Q 013079 176 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL 238 (450)
Q Consensus 176 --------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~ 238 (450)
.|+++|++++...++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ...+
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence 38999999993348999999999999999977 889999999999999999999554321 1223
Q ss_pred C--C-eEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhc-cCCCchHHHHHHHHccC-CcHHHHHHHHHHH
Q 013079 239 G--A-DVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALML-LGPTMNPKVAFELSERI-PHLGLRMKEHCHR 312 (450)
Q Consensus 239 g--~-di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~ 312 (450)
. . |. +.|+||.+|++|.|+ ||++.+ +++++.+.....+.... .++.+.+.++..++... +++....+++.++
T Consensus 221 ~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 298 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN 298 (390)
T ss_dssp CCSSEEE-EECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHhh-ccCccHhhcccChhh-eEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 2 77 999999999899998 988874 78888776544301111 22233333333333322 3345556667888
Q ss_pred HHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccccc
Q 013079 313 ALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 313 ~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
++.+.+.|++ ++ ..+..| ..|.++++.++.. .....+.+.|.. ..| +.+..|+.+
T Consensus 299 ~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f 356 (390)
T 1d2f_A 299 LTYIADKMNAAFPELNWQIP-------------------QSTYLAWLDLRPLNIDDNALQKALIE--QEK-VAIMPGYTY 356 (390)
T ss_dssp HHHHHHHHHHHCSSCCCCCC-------------------SBCSEEEEECGGGCCCHHHHHHHHHH--TTC-EECEEGGGG
T ss_pred HHHHHHHHHhhCCCCEEecC-------------------CccEEEEEEccccCCCHHHHHHHHHH--HcC-EEeeCcccc
Confidence 8999999987 53 333222 1344668888632 124567776652 123 566666443
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 426 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 426 (450)
.. ..++.||||++ ..
T Consensus 357 ~~---------------------~~~~~~Ris~~-~~ 371 (390)
T 1d2f_A 357 GE---------------------EGRGFVRLNAG-CP 371 (390)
T ss_dssp CG---------------------GGTTEEEEECC-SC
T ss_pred CC---------------------CCCCeEEEEec-CC
Confidence 11 01478999999 63
No 89
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=1.9e-27 Score=240.72 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=207.5
Q ss_pred ccccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHH--HHHHHHhcc--C----------CCEEEEeCCCchhH
Q 013079 91 FIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAI--SSVLMQLCS--S----------GGHVVAARTLYGGT 154 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai--~~al~~l~~--~----------gd~Vi~~~~~y~~~ 154 (450)
+.|+. .....++|+.||++++. +++++|+| +++++ ++++.+++. + ||+|+++.|+|+++
T Consensus 72 ~~Y~~--~~g~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~ 146 (427)
T 3ppl_A 72 RNYGG--LDGIVDIRQIWADLLGVPVEQVLAGDA---SSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRH 146 (427)
T ss_dssp TSSCC--SSCCHHHHHHHHHHHTSCGGGEEECSS---CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHH
T ss_pred cCCCC--CCCcHHHHHHHHHHhCCCcceEEEeCC---cHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHH
Confidence 44543 33467899999999986 56899999 99999 588888777 6 89999999999999
Q ss_pred HHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhcCCceEEEEe-cCCCCcccccCHH---HHHHHH-HhcCCEEEEe
Q 013079 155 HALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVD 225 (450)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~~t~lv~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD 225 (450)
...+. ..|.++..++.+ |+++|++++.++++++|+++ ++|||||.+.+.+ +|+++| +++|+++|+|
T Consensus 147 ~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~D 221 (427)
T 3ppl_A 147 FSITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWD 221 (427)
T ss_dssp HHHHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE
T ss_pred HHHHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 88875 367788777654 89999999844689999876 8999999998876 888888 9999999999
Q ss_pred CCCCCCCCC--------cc-------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH
Q 013079 226 NTFSPLVLS--------PA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 290 (450)
Q Consensus 226 ~~~~~~~~~--------~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~ 290 (450)
++|..+.+. .. ..+.++++.|+||+ +++|+|+ ||+++++++++.+....... ....+.+.+.
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~ 298 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGV-SFFLTSAENRKWYTGHAGIR-GIGPNKVNQL 298 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHH
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccE-EEEEcCHHHHHHHHHHhhcc-cCCCCHHHHH
Confidence 999663321 11 23678999999999 6689998 99999999998887665521 1233444455
Q ss_pred HHHHHHccC----CcHHHHHHHHHHHHHHHHHHHHhC----C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 291 VAFELSERI----PHLGLRMKEHCHRALIFARRMKKL----G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 291 ~a~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~----~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
++..++... +++....+.+.++++.+.+.|++. + ..+..|. .|.++++.++.
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~ 359 (427)
T 3ppl_A 299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-------------------GGYFISLDVVP 359 (427)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-------------------BSSCEEEECST
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-------------------ccEEEEEECCc
Confidence 544444431 223344445667777777777552 2 2333332 47789999985
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHH
Q 013079 362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKA 438 (450)
Q Consensus 362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~a 438 (450)
.. ...+.+.+... | +.+..|+.+.... .+..++.||||++ .. ++++.++.|.++
T Consensus 360 ~~-~~~~~~~l~~~---g-v~v~~~g~~~~~~-----------------~~~~~~~~Ris~~-~~~~~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 360 GT-ASRVAELAKEA---G-IALTGAGSSYPLR-----------------QDPENKNLRLAPS-LPPVEELEVAMDGVATC 416 (427)
T ss_dssp TC-HHHHHHHHHHT---T-EECCCTTTTSGGG-----------------CCTTSCEEEECCS-SSCHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHC---C-CEEecCcCcCCCC-----------------CCCCCCeEEEECC-CCCHHHHHHHHHHHHHH
Confidence 32 55666666642 3 5666644322100 0112588999999 63 344445556666
Q ss_pred HHHh
Q 013079 439 LSRM 442 (450)
Q Consensus 439 l~~~ 442 (450)
+.++
T Consensus 417 l~~~ 420 (427)
T 3ppl_A 417 VLLA 420 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 90
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=1.4e-27 Score=240.50 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHhC--------------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079 100 TVLNLSRQMAALEG--------------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA 165 (450)
Q Consensus 100 ~~~~l~~~iA~l~g--------------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~ 165 (450)
...++++.+|++++ .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. .
T Consensus 76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~ 147 (416)
T 1bw0_A 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG---GSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----A 147 (416)
T ss_dssp CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----H
T ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC---hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----H
Confidence 45678888888877 467999999 9999999999999999999999999999887764 2
Q ss_pred cCeeEEEeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079 166 CNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS- 234 (450)
Q Consensus 166 ~g~~v~~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~- 234 (450)
.|.++..++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|..+.+.
T Consensus 148 ~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 226 (416)
T 1bw0_A 148 YGIGMHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG 226 (416)
T ss_dssp TTCEEEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred cCcEEEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 5777777653 2799999999 778999999999999999998 999999999999999999999554321
Q ss_pred ---------ccCC---CCeEEEeCCCCccccCccceEEEEEcCH--HHHHHHHH-Hhh-hhhhccCCCchHHHHHHHHcc
Q 013079 235 ---------PARL---GADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSER 298 (450)
Q Consensus 235 ---------~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~~-~~~-~~~~~~g~~~~~~~a~~~~~~ 298 (450)
...+ +.++++.|+||.++++|+|+ ||++.++ ++++.+.. .+. .......+.+.+.++..++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 305 (416)
T 1bw0_A 227 KDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLN 305 (416)
T ss_dssp SCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHS
T ss_pred CCCCCCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhc
Confidence 1111 24688999999999999998 8887654 34443331 111 001122333444444444432
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHH
Q 013079 299 --IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMN 370 (450)
Q Consensus 299 --~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~ 370 (450)
..++....+++.++++++.+.|++++ ..+..|. .|.++++.++.. .....+..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (416)
T 1bw0_A 306 TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR-------------------GAMYLMSRIDLEKYRDIKTDVEFFE 366 (416)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC-------------------BTTEEEEEECGGGBSSCCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCHHHcCCCCCHHHHHH
Confidence 23355666777888999999998773 3433232 456788888621 12455666
Q ss_pred Hh-hccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013079 371 YL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR 441 (450)
Q Consensus 371 ~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~ 441 (450)
.| .. .| +.+..|+.+. .++.+|||++ .. ++++.++.|.+++++
T Consensus 367 ~l~~~---~g-i~v~~g~~f~-----------------------~~~~iRis~~-~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 367 KLLEE---EN-VQVLPGTIFH-----------------------APGFTRLTTT-RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp HHHHH---HC-EECEEGGGGT-----------------------CTTEEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---CC-EEEecccccC-----------------------CCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 55 33 23 5555553321 1478999999 52 233333444444443
No 91
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=7.1e-28 Score=240.02 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=207.5
Q ss_pred hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
+...++++.||+++|.+ .+++|+| |++|+++++.++ +++||+|+++.++|+++...+...... .|.++.+++.
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~ 134 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDN---VTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPV 134 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESS---HHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCC---hHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcC
Confidence 67889999999999975 6899999 999999999998 889999999999999987654322222 5888888876
Q ss_pred C-------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH----hcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013079 176 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH----DKGVTVVVDNTFS--PLVLSPARLGADV 242 (450)
Q Consensus 176 ~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~----~~gi~livD~~~~--~~~~~~~~~g~di 242 (450)
+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+ ++|+++|+|++|+ ....+....++|+
T Consensus 135 ~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~ 213 (390)
T 1elu_A 135 AATLNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDY 213 (390)
T ss_dssp GGGSSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSE
T ss_pred CCCCCccchHHHHHHhc-CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCE
Confidence 3 789999999 788999999999999999999999999999 9999999999983 2222333457899
Q ss_pred EEeCCCC-ccccCccceEEEEEcCHHHHHHHHHHhhhh-------------------hhccCCC--chHHHHHHHHc---
Q 013079 243 VVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPT--MNPKVAFELSE--- 297 (450)
Q Consensus 243 ~~~S~sK-~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~--~~~~~a~~~~~--- 297 (450)
++.|+|| .+++.| + |+++.++++++.+.....++ ....+.. ....++..++.
T Consensus 214 ~~~s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~ 290 (390)
T 1elu_A 214 YAFTGHKWFAGPAG--V-GGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ 290 (390)
T ss_dssp EEEESSSTTCCCTT--C-EEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH
T ss_pred EEccccccccCCCc--e-EEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 555444 6 99988887776654321000 0011221 11222222222
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079 298 RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 376 (450)
Q Consensus 298 ~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~ 376 (450)
...++....+++.++++++.+.|+++ +.++..|. + +.|+++.|.++.......+.+.|..
T Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~l~~-- 351 (390)
T 1elu_A 291 RQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-A----------------PQAGLVSFTVDSPLGHRAIVQKLEE-- 351 (390)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-C----------------CSSSEEEEEECSSSCHHHHHHHHHH--
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-c----------------ccccEEEEEcCCCCCHHHHHHHHHH--
Confidence 22336667778899999999999987 44554331 0 3567899998622224567777754
Q ss_pred cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.| +.+..|+ .++.||||++ ...+++.++.+.++|.++
T Consensus 352 -~g-i~v~~~~--------------------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 352 -QR-IYLRTIA--------------------------DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp -TT-EECEEET--------------------------TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred -CC-EEEEecC--------------------------CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 23 4444431 1478999998 777888888888887654
No 92
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=2.2e-26 Score=230.67 Aligned_cols=310 Identities=13% Similarity=0.085 Sum_probs=216.2
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCc
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLY 151 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y 151 (450)
+++.+.+.....++. .+.......+...++++.||+++|.+..+++++ |++++..++..+. .+||+|+++.++|
T Consensus 67 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~s---G~~a~~~~~~~l~~~~~gd~Vl~~~~~~ 142 (401)
T 2bwn_A 67 AAMHEALEAVGAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSS---AYNANDATLSTLRVLFPGLIIYSDSLNH 142 (401)
T ss_dssp HHHHHHHHHHCSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHHHHHSTTCEEEEETTCC
T ss_pred HHHHHHHHHcCCCCC-CcCcccCChHHHHHHHHHHHHHhCCCcEEEECC---cHHHHHHHHHHHhcCCCCCEEEECchhh
Confidence 666666654323332 232222345678999999999999877666677 7778777776654 4899999999999
Q ss_pred hhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
+++...+. ..|.++.+++.+|++++++++.. +++++|++++++||||.+.|+++|.++|+++|+++|+|++|
T Consensus 143 ~~~~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~ 217 (401)
T 2bwn_A 143 ASMIEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVH 217 (401)
T ss_dssp HHHHHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccc
Confidence 99988774 36888999998899999998831 57999999999999999999999999999999999999999
Q ss_pred CC--CCCC---c---cCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCC-chHHHHHHHHc
Q 013079 229 SP--LVLS---P---ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE 297 (450)
Q Consensus 229 ~~--~~~~---~---~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~ 297 (450)
+. +... . ..+ ..|+++.|+||.++++| ||+++++++++.+...........+.. ..+.++..++.
T Consensus 218 ~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~ 293 (401)
T 2bwn_A 218 AVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIA 293 (401)
T ss_dssp TTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHH
T ss_pred cccccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHH
Confidence 52 2111 0 111 35899999999999765 899889888887765433221122222 22222223333
Q ss_pred cCCcH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-c
Q 013079 298 RIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-N 374 (450)
Q Consensus 298 ~~~~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~ 374 (450)
.+... ....+++.++++++.+.|++++..+..| .|++++|.++.......+.+.|. .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~ 353 (401)
T 2bwn_A 294 FLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDPVHTKAVSDMLLSD 353 (401)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCChHHHHHHHHHHHhc
Confidence 33333 5566777888999999998875544322 23589999986444667777763 3
Q ss_pred cccccccccccccccccccccccccCCCCCHHHHHhcCC--CCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~--~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.| +.+..+.. .+. ..+.||||++ ...+++.++.+.++|.++.
T Consensus 354 ---~g-i~v~~~~~----------------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 354 ---YG-VYVQPINF----------------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp ---HC-EECCEECT----------------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC
T ss_pred ---CC-EEEeecCC----------------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHH
Confidence 23 45443321 011 1358999999 8778888888888887764
No 93
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.96 E-value=2.1e-27 Score=240.89 Aligned_cols=288 Identities=17% Similarity=0.166 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 100 TVLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 100 ~~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
...++++.||++++ .+.+++|+| |++|+.+++.+++++||+|+++.|.|+++...+. . ..|.+
T Consensus 87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~g---g~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~-~~g~~ 159 (435)
T 3piu_A 87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG---ATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK---W-RTGVE 159 (435)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT---T-TTCCE
T ss_pred CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCC---hHHHHHHHHHHhcCCCCeEEECCCccccHHHHHH---H-hcCCE
Confidence 35788999998887 577999999 9999999999999999999999999998876542 1 25888
Q ss_pred EEEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079 170 TTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS 234 (450)
Q Consensus 170 v~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~ 234 (450)
+..++.+ |+++|++++.+ .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 239 (435)
T 3piu_A 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS 239 (435)
T ss_dssp EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 8887754 89999998832 28999999999999999976 578889999999999999999553221
Q ss_pred c------c----C---------CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079 235 P------A----R---------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFE 294 (450)
Q Consensus 235 ~------~----~---------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~ 294 (450)
. . + .+.++++.|+||.+|++|.|+ ||+++ ++.+.+.+..... ....+.+.+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 315 (435)
T 3piu_A 240 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS---FGLVSSQTQHLLSA 315 (435)
T ss_dssp SSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGG---GSCCCHHHHHHHHH
T ss_pred CCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeE-EEEEeCCHHHHHHHHHHhh---cCCCCHHHHHHHHH
Confidence 1 1 1 233488999999999999998 88887 5667776665443 12233344444433
Q ss_pred HHccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HH
Q 013079 295 LSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EK 364 (450)
Q Consensus 295 ~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~ 364 (450)
++.... ++.+..+++.++++++.+.|+++++.+..+. .|.++++.++.. ..
T Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~l~~~~~~~~~~~ 376 (435)
T 3piu_A 316 MLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEA 376 (435)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------eeEEEEEEcccccccCCchh
Confidence 433332 2334455678888899999988876554322 456899998742 13
Q ss_pred HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHH
Q 013079 365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSR 441 (450)
Q Consensus 365 ~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~ 441 (450)
...+.+.|.. ++| +.+..|+.+.. ..++.||||++ .. ++++.++.|.+++++
T Consensus 377 ~~~~~~~l~~--~~g-i~v~~g~~~~~---------------------~~~~~iRi~~~-~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 377 EMELWKKIVY--EVH-LNISPGSSCHC---------------------TEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp HHHHHHHHHH--TSC-EECEEGGGGTC---------------------SSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCC-EEEeCCcccCC---------------------CCCCEEEEEee-CCCHHHHHHHHHHHHHHHHH
Confidence 4566666643 234 56665544311 12578999999 63 333344444444444
Q ss_pred h
Q 013079 442 M 442 (450)
Q Consensus 442 ~ 442 (450)
+
T Consensus 432 ~ 432 (435)
T 3piu_A 432 Y 432 (435)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=1.2e-27 Score=235.16 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=198.3
Q ss_pred ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
.+...++++.+|+++|.+ .+++|+| |++|+++++.+++++||+|+++.++|+++. .. ..... .|.++.+++.
T Consensus 33 ~~~~~~l~~~la~~~g~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~ 106 (352)
T 1iug_A 33 REVFLKARGLLREAFRTEGEVLILTGS---GTLAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDY 106 (352)
T ss_dssp HHHHHHHHHHHHHHHTCSSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEcCc---hHHHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeC
Confidence 345789999999999975 6899999 999999999999999999999999999976 22 22222 5888888876
Q ss_pred C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079 176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHS 246 (450)
Q Consensus 176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~di~~~S 246 (450)
+ |++++++ +++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+ ....+....++|+++.|
T Consensus 107 ~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 182 (352)
T 1iug_A 107 PYGDTPRPEDVAK----EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASG 182 (352)
T ss_dssp CTTCCCCTTTSCC----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEE
T ss_pred CCCCCCCHHHHhc----cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEec
Confidence 4 4554443 5789999999999999999999999999999 99999999983 23333334578999999
Q ss_pred CCCc-cccCccceEEEEEcCHHHHHH---------HHHHhhh--hhhccCCC-chHH-HHHHHHcc-CCcHHHHHHHHHH
Q 013079 247 ISKF-ISGGADIIAGAVCGPANLVNS---------MMDLHQG--ALMLLGPT-MNPK-VAFELSER-IPHLGLRMKEHCH 311 (450)
Q Consensus 247 ~sK~-~g~~g~~igG~l~~~~~~~~~---------l~~~~~~--~~~~~g~~-~~~~-~a~~~~~~-~~~l~~~~~~~~~ 311 (450)
+||+ +++.| + |+++.++++++. +...... .....+.. .... ++..++.. .+.+....+++.+
T Consensus 183 ~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 259 (352)
T 1iug_A 183 SQKGLMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAW 259 (352)
T ss_dssp SSSTTCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CcccccCCCc--e-eEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9994 55445 5 888888877654 2211000 01122221 1112 22222222 1235666777889
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~ 391 (450)
+++++.+.|++++..+..|. ..+++++|.++.......+.+.|... | +.++.|+.+
T Consensus 260 ~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~~~~-- 315 (352)
T 1iug_A 260 QNALLYGVGEEGGLRPVPKR------------------FSPAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGGQGP-- 315 (352)
T ss_dssp HHHHHHHHHHHTTCEESCSS------------------BCTTCEEEECCTTCCHHHHHHHHHTT---T-EECEECCGG--
T ss_pred HHHHHHHHHHHCCCcccccc------------------cCCeEEEEEcCCCCCHHHHHHHHHHC---C-EEEEeCCCc--
Confidence 99999999998765554331 13568999987322256677777642 3 565555310
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..++.||||++ ..++++.++.+.++|.++
T Consensus 316 ---------------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 316 ---------------------LKGKVFRLSLM-GAYDRYEALGVAGMFREV 344 (352)
T ss_dssp ---------------------GTTTEEEECCC-SSCCHHHHHHHHHHHHHH
T ss_pred ---------------------cCCCEEEEEcc-ccCCHHHHHHHHHHHHHH
Confidence 02478999999 766666677776666654
No 95
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=4.7e-27 Score=236.41 Aligned_cols=292 Identities=20% Similarity=0.226 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
...++++.+|++++ .+.+++|+| |++|+++++.+++++||+|+++.|+|+++...+. ..|.++.
T Consensus 80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~ 151 (409)
T 2gb3_A 80 GIWELREAFASYYKRRQRVDVKPENVLVTNG---GSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLI 151 (409)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCC---HHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence 35677888887764 267999999 9999999999999999999999999999888765 3577888
Q ss_pred EeCCCC------HHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc-
Q 013079 172 FVDISD------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA- 236 (450)
Q Consensus 172 ~v~~~d------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~- 236 (450)
+++.++ +++|++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+ ...
T Consensus 152 ~v~~~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~ 230 (409)
T 2gb3_A 152 PVTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS 230 (409)
T ss_dssp EEECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG
T ss_pred EeccCCCCCCccHHHHHHhh-CcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccc
Confidence 877642 67888888 678999999999999999964 88999999999999999999954432 111
Q ss_pred C-CCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013079 237 R-LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 313 (450)
Q Consensus 237 ~-~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 313 (450)
. .+.|+++.|+||.+|++|+|+ ||++.++ ++++.+....... ..++.+.+.++..++... .++....+++.+++
T Consensus 231 ~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 307 (409)
T 2gb3_A 231 IESDKVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERV 307 (409)
T ss_dssp SCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecchhccCCccceE-EEEEECcHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2 267999999999999899998 9999887 8888887665422 123333343443444322 23445556678889
Q ss_pred HHHHHHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc---cccccccccccccc
Q 013079 314 LIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY---AQFGFMAVSLGYYE 389 (450)
Q Consensus 314 ~~l~~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~---~~~g~i~vs~G~~~ 389 (450)
+++.+.|++++..+ ..|. .|.++++.+++. ....+.+.|... ...| +.+..|..+
T Consensus 308 ~~l~~~L~~~g~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~g-i~v~~g~~f 366 (409)
T 2gb3_A 308 ETVLKKLEEHGLKRFTKPS-------------------GAFYITAELPVE-DAEEFARWMLTDFNMDGET-TMVAPLRGF 366 (409)
T ss_dssp HHHHHHHHHTTCCCBCCCS-------------------BSSEEEEECSSS-CHHHHHHHHHHSCCBTTEE-EECEEGGGG
T ss_pred HHHHHHHHHcCceeeeCCC-------------------eeEEEEEEeCCC-CHHHHHHHHHhccccccCc-EEEeCchHh
Confidence 99999998876544 3221 355778888622 245566666531 0013 555555332
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~ 443 (450)
... .+..++.||||++ . ++.++.++.|.+++.+++
T Consensus 367 ~~~------------------~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 367 YLT------------------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp CSS------------------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC------------------CCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHhh
Confidence 110 0122578999999 5 334555566666665553
No 96
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=4.2e-27 Score=234.85 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=199.3
Q ss_pred ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
.+..+++++.+|+++|.+ .+++|+| |++|+.+++.+++++||+|+++.++|+++. .. ..... .|.++.+++.
T Consensus 41 ~~~~~~l~~~la~~~g~~~~~v~~t~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~ 114 (392)
T 2z9v_A 41 QLLYEKVVDKAQKAMRLSNKPVILHGE---PVLGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEESSC---THHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCC---chHHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeC
Confidence 345789999999999974 6899999 999999999999999999999999999873 21 12122 5777777775
Q ss_pred C-----CHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCC
Q 013079 176 S-----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSI 247 (450)
Q Consensus 176 ~-----d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~ 247 (450)
+ |+++|++++++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~ 194 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGP 194 (392)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECS
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecC
Confidence 3 89999999842 579999999999999999999999999999999999999983 233333445789999999
Q ss_pred CCcc-ccCccceEEEEEcCHHHHHHHHHHhh-----------------hhhhccCCCchHH--HH-HHHHccC-Cc-HHH
Q 013079 248 SKFI-SGGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNPK--VA-FELSERI-PH-LGL 304 (450)
Q Consensus 248 sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~~--~a-~~~~~~~-~~-l~~ 304 (450)
||++ +++| + |+++.++++++.+..... ......+ +.+.. .+ ..++... +. +..
T Consensus 195 sK~~~~~~g--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~g~~~ 270 (392)
T 2z9v_A 195 NKCLGAPPG--L-TMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPF-TPSVSEINGLDVALDLYLNEGPEA 270 (392)
T ss_dssp SSTTCCCSC--C-EEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSS-CCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccccCCCc--e-eEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCC-CCCHHHHHHHHHHHHHHHhccHHH
Confidence 9965 4556 4 899999888877753210 0001122 22222 11 1222221 11 455
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079 305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 384 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs 384 (450)
..+++.++++++.+.|++++..+..|. +. ...+++++|.++.......+.+.|... +| +.+.
T Consensus 271 ~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-i~v~ 332 (392)
T 2z9v_A 271 VWARHALTAKAMRAGVTAMGLSVWAAS----DS-----------IASPTTTAVRTPDGVDEKALRQAARAR--YG-VVFS 332 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSSS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-EECE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCC----cc-----------ccCCceEEEECCCCCCHHHHHHHHHhc--CC-EEEe
Confidence 566778889999999988755543321 00 024568899986222245677666542 23 5555
Q ss_pred cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079 385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 442 (450)
.|+.+ ..++.||||+ + ...+++.++.+.++|.++
T Consensus 333 ~g~~~-----------------------~~~~~lRi~~~~-~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 333 SGRGE-----------------------TLGKLTRIGHMG-PTAQPIYAIAALTALGGA 367 (392)
T ss_dssp ECCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred cCCCC-----------------------CCCCeEEEeCcc-cccCHHHHHHHHHHHHHH
Confidence 55321 0157899995 5 344455555555555443
No 97
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=6.2e-27 Score=235.70 Aligned_cols=279 Identities=15% Similarity=0.067 Sum_probs=193.9
Q ss_pred HHHHHHHHHHH----hCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 101 VLNLSRQMAAL----EGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 101 ~~~l~~~iA~l----~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
..++++.++++ .+.+ .+++|+| |++|+++++++++++||+|+++.|.|+++...+. ..|.++..+
T Consensus 81 ~~~lr~~la~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~ 152 (413)
T 3t18_A 81 EKDYRKIVIDTLFGPYKPEGYISAIATPG---GTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICE-----EFGRNFKTF 152 (413)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESH---HHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHH-----HHTCEEEEE
T ss_pred CHHHHHHHHHHHhcccCccccCcEEEcCc---cHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHH-----HhCCeEEEe
Confidence 34455555553 3566 8999999 9999999999999999999999999999988775 367788888
Q ss_pred CCC------CHHHHHHhhhcC----Cce-EEEEecC-CCCcccccCHHH---HHHHHH------hcCCEEEEeCCCCCCC
Q 013079 174 DIS------DHEMVNSAIVQG----RTK-VLYFESI-SNPTLAVANIPE---LSRLAH------DKGVTVVVDNTFSPLV 232 (450)
Q Consensus 174 ~~~------d~~~l~~ai~~~----~t~-lv~i~~~-~NptG~v~~l~~---I~~la~------~~gi~livD~~~~~~~ 232 (450)
+.. |+++|++++ ++ +++ ++++++| |||||.+.+.++ |+++|+ ++|+++|+|++|..+.
T Consensus 153 ~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~ 231 (413)
T 3t18_A 153 EFFTDDFAFNIDVYKEAI-DEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA 231 (413)
T ss_dssp CCBCTTSSBCHHHHHHHH-HHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGS
T ss_pred eccCCCCCcCHHHHHHHH-HHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEeccccccc
Confidence 751 799999988 43 677 7888999 999999988654 555665 8999999999985554
Q ss_pred CCcc------C----CCC---eEEEeCCCCccccCccceEEEEEc---CHHHHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079 233 LSPA------R----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELS 296 (450)
Q Consensus 233 ~~~~------~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 296 (450)
.... . ++. +++++|+||.++++|+|+ ||+++ ++++++.+...............+.....++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 310 (413)
T 3t18_A 232 GDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRS-GAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILI 310 (413)
T ss_dssp SSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred CChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcCc-EEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHH
Confidence 3211 1 111 388899999999999998 99987 88998888765442211111112222222222
Q ss_pred ccCCc---------HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013079 297 ERIPH---------LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 367 (450)
Q Consensus 297 ~~~~~---------l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 367 (450)
..++. +....+++.++++.+.+.|++++..+..|. .|.++++.+.+. ..
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------------~~~~~~~~~~~~---~~ 368 (413)
T 3t18_A 311 ELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENKLTMIPYF-------------------GGFFTFIPTDKA---FD 368 (413)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-------------------SSSCEEEECSCH---HH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-------------------ceEEEEeCCCCH---HH
Confidence 22221 223345578888889999998866544332 344677776543 44
Q ss_pred HHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
+.+.|.. .| +.+..| ++.||||++ ..+.+++++.|.++++++.+
T Consensus 369 ~~~~l~~---~g-v~v~~g----------------------------~~~iRis~~-~~~~~~~l~~l~~~l~~~~~ 412 (413)
T 3t18_A 369 IVKDLEK---EN-IFTIPS----------------------------AKGIRVAIC-GVGEEKIPKLVQRLAFYTNK 412 (413)
T ss_dssp HHHHHHH---TT-EECEEC----------------------------SSEEEECTT-TSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CC-EEEecC----------------------------CCceEEEEe-eCCHHHHHHHHHHHHHHHhc
Confidence 5555543 23 444433 367999999 76666669999999987753
No 98
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=2.9e-27 Score=237.39 Aligned_cols=290 Identities=13% Similarity=0.141 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccCeeEEEe
Q 013079 99 PTVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFV 173 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~v~~v 173 (450)
+..+++++.++++++.+. +++|+| |++|+++++.+++++||+|+++.++|++ +...+. ..|.++.++
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~s---gt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~v 117 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGT---SRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR-----RCRAEVHTI 117 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-----HTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCC---cHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH-----HcCCeEEEE
Confidence 567899999999998643 688899 9999999999999999999999999987 554443 268888888
Q ss_pred CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeC
Q 013079 174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHS 246 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S 246 (450)
+.+ |+++|++++...++++|++++|+||||.+.|+++|.++|+++|+++|+|+++ +....+....++|+++.|
T Consensus 118 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s 197 (411)
T 3nnk_A 118 EVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAG 197 (411)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred ecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEec
Confidence 766 8999999993238999999999999999999999999999999999999998 333345555689999999
Q ss_pred CCCc-cccCccceEEEEEcCHHHHHHHHHHhh---h-----------------------------hhhccCCCchHH--H
Q 013079 247 ISKF-ISGGADIIAGAVCGPANLVNSMMDLHQ---G-----------------------------ALMLLGPTMNPK--V 291 (450)
Q Consensus 247 ~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~~---~-----------------------------~~~~~g~~~~~~--~ 291 (450)
+||+ +++.| + |+++.++++++.+..... + .......+.+.. .
T Consensus 198 ~~K~l~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (411)
T 3nnk_A 198 MQKCLGGPSG--T-SPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALF 274 (411)
T ss_dssp STTTTCCCSS--E-EEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHH
T ss_pred CccccCCCCc--e-EEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHH
Confidence 9997 55544 5 999999998887765330 0 000011122221 1
Q ss_pred HH-HHHccC-C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079 292 AF-ELSERI-P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 368 (450)
Q Consensus 292 a~-~~~~~~-~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~ 368 (450)
+. .++... + .+....+++.++++++.+.|++.+..+..|.. ...+.+++|.++.......+
T Consensus 275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l 338 (411)
T 3nnk_A 275 GARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQA 338 (411)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc----------------cccccEEEEECCCCCCHHHH
Confidence 11 122211 1 14566677888999999999987665443320 12466899999632224566
Q ss_pred HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079 369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 369 ~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 442 (450)
.+.|... +| +.+..|.. ...++.||||+ | ..++++.++.+.++|.++
T Consensus 339 ~~~l~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~ 386 (411)
T 3nnk_A 339 RKLMLED--FG-IEIGTSFG-----------------------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAV 386 (411)
T ss_dssp HHHHHHH--HS-EEEEECCG-----------------------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cC-eEEeCccC-----------------------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHH
Confidence 6665431 23 45554411 11257899998 7 655555566665555554
No 99
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.96 E-value=9.8e-27 Score=240.08 Aligned_cols=322 Identities=16% Similarity=0.122 Sum_probs=205.9
Q ss_pred cccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC-----CCeEEEecChHHHHHHHHHHHHHhccCCC
Q 013079 68 FTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG-----TEAAYCTASDKAGMSAISSVLMQLCSSGG 142 (450)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd 142 (450)
++...++++.+.+....+.....|.......+.++.+.+.+++..| .+.+++|+| +++|+.+++..++.+||
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G---~~~ai~~~~~~l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTG---ASDGISTILKILVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESS---HHHHHHHHHHHHCCCCG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCC---HHHHHHHHHHHHcCCCC
Confidence 3333345566666543211112233332223344455555554443 467999999 99999999999998875
Q ss_pred ----EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhcC-----CceEEEEecCCCCccccc
Q 013079 143 ----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISNPTLAVA 206 (450)
Q Consensus 143 ----~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~ 206 (450)
+|+++.|.|+.+...+. ..|.++..++.+ |+++|++++ ++ ++++|++++|+||||.+.
T Consensus 179 ~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~le~~l-~~~~~~~~~k~i~l~np~NPTG~v~ 252 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSAVIS-----ELDAIQVNYYLDEENCWALNVNELRRAV-QEAKDHCDPKVLCIINPGNPTGQVQ 252 (498)
T ss_dssp GGSEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBGGGTTBCCHHHHHHHH-HHHTTTSEEEEEEEESSCTTTCCCC
T ss_pred CCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeeccccccCCCCHHHHHHHH-HhhhccCCCeEEEEECCCCCCCCcC
Confidence 99999999999988875 357777777654 899999998 44 589999999999999996
Q ss_pred C---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----CC--------------CCeEEEeCCCCcc-ccCccceEEEEE-
Q 013079 207 N---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----RL--------------GADVVVHSISKFI-SGGADIIAGAVC- 263 (450)
Q Consensus 207 ~---l~~I~~la~~~gi~livD~~~~~~~~~~~----~~--------------g~di~~~S~sK~~-g~~g~~igG~l~- 263 (450)
+ +++|+++|+++|+++|+|++|..+.+... .+ ...++++|+||.+ |.+|.|+ ||++
T Consensus 253 s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~-G~~~~ 331 (498)
T 3ihj_A 253 SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG-GYMEV 331 (498)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC-EEEEE
T ss_pred CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce-EEEEE
Confidence 6 67799999999999999999966544311 11 1247889999999 7799997 9987
Q ss_pred --cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-----------CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079 264 --GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFARRMKKLG-LKVLY 329 (450)
Q Consensus 264 --~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~ 329 (450)
.++++++.+...... ....+.+.+.++..++.. .++.....+++.++++.+.+.|++++ +.+..
T Consensus 332 ~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~ 409 (498)
T 3ihj_A 332 INLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNP 409 (498)
T ss_dssp ESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC
T ss_pred ecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecC
Confidence 688888888766441 122333444433333322 01123344567888999999998873 34433
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH-----------HHH--HHHHhhccccccccccccccccccccccc
Q 013079 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK-----------ANR--LMNYLQNYAQFGFMAVSLGYYETLMSCSG 396 (450)
Q Consensus 330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~-----------~~~--~~~~l~~~~~~g~i~vs~G~~~s~~~~~~ 396 (450)
|. .|.++++.+..... ... +...|.. .| +.+..|+.+...
T Consensus 410 p~-------------------gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~---~g-I~v~pG~~f~~~---- 462 (498)
T 3ihj_A 410 LQ-------------------GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE---TG-ICVVPGSGFGQR---- 462 (498)
T ss_dssp CC-------------------BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH---HC-BCCEEGGGTCCC----
T ss_pred CC-------------------eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCCC----
Confidence 22 34456655541110 112 2233333 23 666666553210
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhhhc
Q 013079 397 SSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~~~ 445 (450)
...+.+|||++ . ++.++.++.|.+++.++.++
T Consensus 463 ----------------~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 463 ----------------EGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp ----------------TTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 11468999998 5 34556677777777766543
No 100
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=4.6e-27 Score=234.88 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=200.2
Q ss_pred ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHH--HHHHhCCCccCeeEEE
Q 013079 98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHA--LLTHFFPRACNITTTF 172 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~--~~~~~~~~~~g~~v~~ 172 (450)
....+++++.+|+++|.+ .+++|+| |++|+.+++.+++++||+|+++.|+|+++.. .+. ..|.++.+
T Consensus 50 ~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~g~~~~~ 121 (396)
T 2ch1_A 50 FRTMDEVKDGLRYIFQTENRATMCVSGS---AHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-----RYGADVRT 121 (396)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEECCc---HHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH-----HcCCceEE
Confidence 345889999999999974 5889999 9999999999999999999999999999742 222 26888888
Q ss_pred eCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079 173 VDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 244 (450)
Q Consensus 173 v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~ 244 (450)
++. .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|. ....+...+++|+++
T Consensus 122 v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~ 200 (396)
T 2ch1_A 122 IEGPPDRPFSLETLARAI-ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVY 200 (396)
T ss_dssp EECCTTSCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEE
T ss_pred ecCCCCCCCCHHHHHHHH-HhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEE
Confidence 874 3899999999 65 79999999999999999999999999999999999999984 222333445789999
Q ss_pred eCCCCccccCccceEEEEEcCHHHHHHHHHHh--------------hhh------hhccCCC--chHHHHHHHHccC--C
Q 013079 245 HSISKFISGGADIIAGAVCGPANLVNSMMDLH--------------QGA------LMLLGPT--MNPKVAFELSERI--P 300 (450)
Q Consensus 245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--------------~~~------~~~~g~~--~~~~~a~~~~~~~--~ 300 (450)
.|+||+++++. .+ |+++.++++++.+.... ... ....++. ..+.++..++... +
T Consensus 201 ~s~~K~~~~~~-g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 278 (396)
T 2ch1_A 201 TGAQKVLGAPP-GI-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE 278 (396)
T ss_dssp CCCC-CCCCCS-SC-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCccccCCC-Ce-EEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 99999766432 25 88888888777664210 000 0011111 1222222233222 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 380 (450)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~ 380 (450)
.+....+++.++++++.+.|++++.++..|.- .+..+.+++|.++.......+.+.|... +|
T Consensus 279 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g- 340 (396)
T 2ch1_A 279 GLENQIKRRIECAQILYEGLGKMGLDIFVKDP---------------RHRLPTVTGIMIPKGVDWWKVSQYAMNN--FS- 340 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSG---------------GGBCTTEEEEECCTTCCHHHHHHHHHHH--HC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCeeccCCc---------------cccCCceEEEEcCCCCCHHHHHHHHHHh--CC-
Confidence 35566777888999999999887655443320 0123558999986222245676666431 23
Q ss_pred cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCC----CHHHHHHHHHHHHHHhh
Q 013079 381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLG----TLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~----~~~~~i~~l~~al~~~~ 443 (450)
+.+..|..+ ..++.||||+ + .. +.+++++.|.++++++.
T Consensus 341 i~v~~g~~~-----------------------~~~~~iRi~~~~-~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 341 LEVQGGLGP-----------------------TFGKAWRVGIMG-ECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp BCCBCCCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccc-----------------------cCCCEEEEECCC-CcCCHHHHHHHHHHHHHHHHHhC
Confidence 555544321 0257899999 6 43 34455555555555554
No 101
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.95 E-value=2.4e-27 Score=240.11 Aligned_cols=281 Identities=11% Similarity=0.084 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHh-----CC--Ce---EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCc-cCe
Q 013079 100 TVLNLSRQMAALE-----GT--EA---AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNI 168 (450)
Q Consensus 100 ~~~~l~~~iA~l~-----g~--~~---~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~ 168 (450)
...++++.||+++ +. +. +++|+| |++|+++++.+++++||+|+++.|+|+++...+. . .|.
T Consensus 89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~~g~ 160 (430)
T 2x5f_A 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNA---LTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN-----TRNGA 160 (430)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESH---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT-----TTTCC
T ss_pred CCHHHHHHHHHHHhccCcccCCCccceEEEcCC---chHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH-----HhcCC
Confidence 3678999999988 54 67 899999 9999999999999999999999999999987764 3 577
Q ss_pred eEEEeCCC------CHHHHHHhhhcC---CceEEEEecCCCCcccccC---HHHHHHHHHh-----cCCEEEEeCCCCCC
Q 013079 169 TTTFVDIS------DHEMVNSAIVQG---RTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPL 231 (450)
Q Consensus 169 ~v~~v~~~------d~~~l~~ai~~~---~t~lv~i~~~~NptG~v~~---l~~I~~la~~-----~gi~livD~~~~~~ 231 (450)
++..++.+ |+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+.+
T Consensus 161 ~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~ 239 (430)
T 2x5f_A 161 NLQTYPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL 239 (430)
T ss_dssp EEEEECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC
T ss_pred eEEEEeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc
Confidence 88777642 689999988 54 7899999999999999988 8899999999 99999999999654
Q ss_pred CCC-----c-c-C----CCC---eEEEeCCCCccccCccceEEEEEc---CHHHHHHHHHHhhhh---hhccCCCchHHH
Q 013079 232 VLS-----P-A-R----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKV 291 (450)
Q Consensus 232 ~~~-----~-~-~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~---~~~~g~~~~~~~ 291 (450)
.+. + . . .+. ++++.|+||.+|++|+|+ ||++. ++++++.+....... .....+.+.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 318 (430)
T 2x5f_A 240 FYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA 318 (430)
T ss_dssp BCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred cCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHH
Confidence 321 1 1 1 246 789999999999899998 99988 888888887654420 112233344444
Q ss_pred HHHHHc-cCCcHHH---HHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013079 292 AFELSE-RIPHLGL---RMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 363 (450)
Q Consensus 292 a~~~~~-~~~~l~~---~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 363 (450)
+..++. ...+... ..+++.++++.+.+.|+ +.+..+..| ..|.++++.+++.
T Consensus 319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~-------------------~~g~~~~~~~~~~- 378 (430)
T 2x5f_A 319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDF-------------------NSGYFMAIKVHDV- 378 (430)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCC-------------------CBSSEEEEEESSS-
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCC-------------------CceEEEEeCCCCC-
Confidence 444443 2222333 55667888899999998 444443322 1345789999722
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHH
Q 013079 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALS 440 (450)
Q Consensus 364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~ 440 (450)
+...+.+.|.. ..| +.+..| .++.||||++ . +++++.++.|.++++
T Consensus 379 ~~~~~~~~l~~--~~g-i~v~~g---------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 427 (430)
T 2x5f_A 379 DPEALRKHLID--KYS-IGVIAL---------------------------NATDIRIAFS-CVEKDDIPHVFDSIAKAID 427 (430)
T ss_dssp CHHHHHHHHHH--HHC-EECEEC---------------------------SSSEEEEEGG-GSCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCC-EEEecC---------------------------CCCeEEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 24556666653 022 444433 1478999999 4 345555566665555
Q ss_pred H
Q 013079 441 R 441 (450)
Q Consensus 441 ~ 441 (450)
+
T Consensus 428 ~ 428 (430)
T 2x5f_A 428 D 428 (430)
T ss_dssp H
T ss_pred h
Confidence 4
No 102
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=7.9e-27 Score=234.62 Aligned_cols=292 Identities=13% Similarity=0.127 Sum_probs=202.3
Q ss_pred ChhHHHHHHHHHHHhCCCe--E-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccCeeEEE
Q 013079 98 NPTVLNLSRQMAALEGTEA--A-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTF 172 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~--~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~v~~ 172 (450)
.+..+++++.+++++|.+. + ++|+| |++|+.+++.+++++||+|+++.++|++ +...+. ..|.++.+
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s---~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~ 114 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGT---SRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAE-----RYGANVHM 114 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCc---HHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH-----hcCCeeEE
Confidence 5668999999999999753 4 48899 9999999999999999999999999998 433333 26888888
Q ss_pred eCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013079 173 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH 245 (450)
Q Consensus 173 v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~ 245 (450)
++.+ |+++|++++.++++++|++++++||||.+.|+++|.++|+++|+++|+|++| +....+....++|+++.
T Consensus 115 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 194 (416)
T 3isl_A 115 LECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIG 194 (416)
T ss_dssp EECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEEC
T ss_pred EecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEe
Confidence 8876 8999999993268999999999999999999999999999999999999998 33444555668999999
Q ss_pred CCCCc-cccCccceEEEEEcCHHHHHHHHHHh--------------------------------h--hhhhccCCCchHH
Q 013079 246 SISKF-ISGGADIIAGAVCGPANLVNSMMDLH--------------------------------Q--GALMLLGPTMNPK 290 (450)
Q Consensus 246 S~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~--------------------------------~--~~~~~~g~~~~~~ 290 (450)
|+||+ +++.| + |+++.++++++.+.... . ........+.+..
T Consensus 195 s~~K~l~g~~g--~-g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (416)
T 3isl_A 195 GTQKCLSVPSG--M-APITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATT 271 (416)
T ss_dssp CSSSTTCCCSS--E-EEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHH
T ss_pred cCccccCCCCC--e-EEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHH
Confidence 99997 55555 5 99999998887775321 0 0000111122221
Q ss_pred --HH-HHHHccC-Cc-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079 291 --VA-FELSERI-PH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 365 (450)
Q Consensus 291 --~a-~~~~~~~-~~-l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 365 (450)
.+ ..++... +. +....+++.++++++.+.|++.+.++..|.. ...+.+++|.++.....
T Consensus 272 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 335 (416)
T 3isl_A 272 MLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDG 335 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCH
Confidence 11 1222211 12 5566677888999999999987655543320 02466899999632235
Q ss_pred HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHH
Q 013079 366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSR 441 (450)
Q Consensus 366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~ 441 (450)
..+.+.|... +| +.++.|.. ...++.||||++...+ +++.++.|.+++.+
T Consensus 336 ~~l~~~L~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 336 ESVRDMLLAQ--FG-IEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp HHHHHHHHHH--HC-EECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CC-EEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 6677776531 23 56565521 1225789999941333 34444445554444
Q ss_pred h
Q 013079 442 M 442 (450)
Q Consensus 442 ~ 442 (450)
+
T Consensus 390 ~ 390 (416)
T 3isl_A 390 H 390 (416)
T ss_dssp T
T ss_pred c
Confidence 3
No 103
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=6.7e-27 Score=235.45 Aligned_cols=298 Identities=16% Similarity=0.119 Sum_probs=198.5
Q ss_pred ChhHHHHHHHHHHHh------C--CCeEEEecChHHHHHHHHHHHHHhccCCC-----EEEEe-CCCchhHHHHHHHhCC
Q 013079 98 NPTVLNLSRQMAALE------G--TEAAYCTASDKAGMSAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP 163 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~------g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd-----~Vi~~-~~~y~~~~~~~~~~~~ 163 (450)
.....++|+.||+++ + .+++++|+| |++|+++++++++++|| +|+++ .|+|+++...+.....
T Consensus 74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~ 150 (417)
T 3g7q_A 74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNG---SQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDL 150 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCC---cHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhh
Confidence 445678888888886 2 467999999 99999999999999987 89997 9999998765421110
Q ss_pred -CccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCC--
Q 013079 164 -RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL-- 231 (450)
Q Consensus 164 -~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~-- 231 (450)
...+..+..++.+ |+++|+ + ++++++|++++||||||.+.+ +++|+++|+++|+++|+|++|+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~ 227 (417)
T 3g7q_A 151 FVSARPNIELLPEGQFKYHVDFEHLH--I-GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP 227 (417)
T ss_dssp EEECCCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred hccccCcccccCCcccccccCHHHhc--c-ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc
Confidence 0124455555432 777776 5 778999999999999999988 889999999999999999999532
Q ss_pred --CC---CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH---
Q 013079 232 --VL---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--- 303 (450)
Q Consensus 232 --~~---~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~--- 303 (450)
.+ .+...+.++++.|+|| ++++|+|+ ||++.++++++.+....... ...++.+.+.++...+.......
T Consensus 228 ~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (417)
T 3g7q_A 228 GIIFSEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEMIKRNDLLRLSE 304 (417)
T ss_dssp CCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEECCHHHHHHHHHHHHHH-CCCCCSHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccCCCCCEEEEEechh-ccCCCcce-EEEEeCHHHHHHHHHhhcce-eeCCCcHHHHHHHHHHcCcchHHHHH
Confidence 11 1222468899999999 58899998 99999999999887765522 23344555555554444433222
Q ss_pred H-HHHHHHHHHHHHHHHHHh-CC---CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccc
Q 013079 304 L-RMKEHCHRALIFARRMKK-LG---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQ 377 (450)
Q Consensus 304 ~-~~~~~~~~~~~l~~~L~~-~~---~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~ 377 (450)
. ..+++.++++.+.+.|++ ++ ..+..|. .|.++++.++. ......+...|..
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~--- 362 (417)
T 3g7q_A 305 TVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE-------------------GAIFLWLWFKDLPITTELLYQRLKA--- 362 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-------------------BSSEEEEECTTCSSCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-------------------cceEEEEEcCCCCCCHHHHHHHHHH---
Confidence 2 234467777888888876 32 3444332 56789999874 2235667777754
Q ss_pred ccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079 378 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 378 ~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 442 (450)
.| +.+..|+.|....... .+..++.||||++ . +++++.++.|.+++.++
T Consensus 363 ~g-i~v~~g~~f~~~~~~~--------------~~~~~~~iRis~~-~~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 363 RG-VLMVPGHYFFPGLDKP--------------WPHTHQCMRMNYV-PEPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp TT-EECEEGGGGCTTBSSC--------------CGGGGGEEEEESC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CC-EEEECchhhCCCCccc--------------cccCCCeEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence 33 6777776553211000 0001468999999 6 12333445555555544
No 104
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.95 E-value=9.1e-27 Score=228.69 Aligned_cols=281 Identities=19% Similarity=0.177 Sum_probs=192.4
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHH---HHHHhCCCccCeeEEEe
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHA---LLTHFFPRACNITTTFV 173 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~---~~~~~~~~~~g~~v~~v 173 (450)
..+...+++++||+++|.+.+++|+| |++|+.+++.+++++||+|++++|+|.++.. .+. ..|.++.++
T Consensus 36 ~~~~~~~l~~~la~~~g~~~~~~~~~---gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-----~~g~~~~~v 107 (347)
T 1jg8_A 36 EDPTINELERLAAETFGKEAALFVPS---GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV-----LSGVMPHPV 107 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHH-----HTCCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCceEEEecC---cHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhh-----ccCeEEEEe
Confidence 46788999999999999999999999 9999999999989999999999999987543 222 257777776
Q ss_pred CCC-----CHHHHHHhhhcC------CceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCCC--CC---CC
Q 013079 174 DIS-----DHEMVNSAIVQG------RTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS--PL---VL 233 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~------~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~--~~---~~ 233 (450)
.+ |+++|++++ ++ +|++|++++|+||| |.+.| +++|+++|+++|+++|+|++|. .+ ..
T Consensus 108 -~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~ 185 (347)
T 1jg8_A 108 -PGKNGAMDPDDVRKAI-RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV 185 (347)
T ss_dssp -CEETTEECHHHHHHHS-CCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC
T ss_pred -cCCCCccCHHHHHHHh-ccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC
Confidence 32 899999999 53 69999999999999 99876 5688999999999999999862 11 12
Q ss_pred CccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079 234 SPAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH 311 (450)
Q Consensus 234 ~~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~ 311 (450)
++.. .+.|.++.|+||+++++ +|++++.++++++.+...+... ..+.......+......++....++++..+
T Consensus 186 ~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (347)
T 1jg8_A 186 PVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMVDRLKEDHE 260 (347)
T ss_dssp CHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSSTTHHHHHH
T ss_pred ChHHhcccccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 25788888999999865 5557788888888776655421 111111222221111111111112333445
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079 312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET 390 (450)
Q Consensus 312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s 390 (450)
+++.+.+.|++++..+..+. ..++++++.++. ......|.+.|... | +.++.+
T Consensus 261 ~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~---- 314 (347)
T 1jg8_A 261 NARFLALKLKEIGYSVNPED------------------VKTNMVILRTDNLKVNAHGFIEALRNS---G-VLANAV---- 314 (347)
T ss_dssp HHHHHHHHHHHHTCBCCGGG------------------CCSSEEEEECTTSSSCHHHHHHHHHHH---T-EECEEE----
T ss_pred HHHHHHHHHHhcCceeccCC------------------CcceEEEEEcccccCCHHHHHHHHHHC---C-CEEecC----
Confidence 67788888887654432111 235689999873 22256677777542 3 444321
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+ ++.||||++ ...+++.++.+.++|.++
T Consensus 315 ---------------------~--~~~iRl~~~-~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 315 ---------------------S--DTEIRLVTH-KDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp ---------------------E--TTEEEEECC-TTSCHHHHHHHHHHHHHH
T ss_pred ---------------------C--CCeEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 0 367999998 766677777777776654
No 105
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.95 E-value=3.2e-27 Score=240.47 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=205.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEe
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA 147 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~ 147 (450)
+++.+.+... +++...+.|+. .+...++++.||+++ + .+.+++|+| +++++.++ ..++++||+|+++
T Consensus 89 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G---~~~al~~~-~~l~~~gd~Vl~~ 161 (449)
T 3qgu_A 89 DAMAKAAAGL-ATREGYSGYGA--EQGQGALREAVASTFYGHAGRAADEIFISDG---SKCDIARI-QMMFGSKPTVAVQ 161 (449)
T ss_dssp HHHHHHHHGG-GGSCCCCCSTT--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESC---HHHHHHHH-HHHHCSSSCEEEE
T ss_pred HHHHHHHHhh-ccccCCCCCCC--CCCcHHHHHHHHHHHHcCCCCCHHHEEEccC---HHHHHHHH-HHHhCCCCEEEEc
Confidence 5566555432 22223344542 244678999999997 3 467999999 99999998 7888999999999
Q ss_pred CCCchhHHHHHHHhCCCccCee----------EEEeCCCCHHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHH
Q 013079 148 RTLYGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSR 213 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~~~g~~----------v~~v~~~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~ 213 (450)
.|.|+++...+.. .|.+ +..++.++.+.+...+.. +++++|++++|+||||.+.+ +++|++
T Consensus 162 ~p~~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 236 (449)
T 3qgu_A 162 DPSYPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVN 236 (449)
T ss_dssp ESCCTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 9999999887752 4545 667666532222222212 57999999999999999976 778889
Q ss_pred HHHhcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHH--------HHHHH
Q 013079 214 LAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVN--------SMMDL 275 (450)
Q Consensus 214 la~~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--------~l~~~ 275 (450)
+|+++|+++|+|++|+.+... ... .+.++++.|+||.+|++|+|+ ||+++++++++ .+...
T Consensus 237 l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~ 315 (449)
T 3qgu_A 237 FARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTVVPKALKYANGEPVHADWNRV 315 (449)
T ss_dssp HHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEECCTTCBCTTSCBHHHHHHHH
T ss_pred HHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEecCHHHHhhhhhhHHHHHHHH
Confidence 999999999999999554332 111 256899999999999999998 99998877654 33333
Q ss_pred hhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079 276 HQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 353 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~ 353 (450)
.. .....++.+.+.++..++.. .+++.+..+++.++++++.+.|+++++.+..|. .|.
T Consensus 316 ~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~ 375 (449)
T 3qgu_A 316 MT-TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-------------------DAP 375 (449)
T ss_dssp HH-HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS-------------------SSS
T ss_pred hh-cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------Cee
Confidence 22 11112333333333333322 234556667788999999999999877655432 466
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079 354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 433 (450)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 433 (450)
++++.+++. ....+...|.. +.| +.+..|+.+.. ..++.||||+. . +++.++
T Consensus 376 ~~~~~~~~~-~~~~~~~~l~~--~~g-I~v~pg~~f~~---------------------~~~~~iRis~~-~--~~e~i~ 427 (449)
T 3qgu_A 376 YIWVGFPGK-PSWDVFAEILE--RCN-IVTTPGSGYGP---------------------AGEGFVRASAF-G--SRENIL 427 (449)
T ss_dssp EEEEECTTS-CHHHHHHHHHH--HHC-EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHH
T ss_pred EEEEECCCC-CHHHHHHHHHH--HCC-EEEecchHhCC---------------------CCCCeEEEEec-C--CHHHHH
Confidence 899998722 24455555443 123 56666644321 01578999987 4 344455
Q ss_pred HHHHHHHHh
Q 013079 434 QFEKALSRM 442 (450)
Q Consensus 434 ~l~~al~~~ 442 (450)
.+.++|.++
T Consensus 428 ~~l~~l~~~ 436 (449)
T 3qgu_A 428 EAVRRFKEA 436 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 106
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.95 E-value=3.1e-26 Score=236.58 Aligned_cols=289 Identities=13% Similarity=0.080 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~ 171 (450)
...+++.+|+++ | .+.+++|+| +++|+.+++..++ .+||+|+++.|.|+++...+. ..|.++.
T Consensus 136 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~ 207 (500)
T 3tcm_A 136 IHGLRDAIASGIASRDGFPANADDIFLTDG---ASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALV 207 (500)
T ss_dssp CHHHHHHHHHHHHHHHSSCCCGGGEEEESS---SHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred hHHHHHHHHHHHHhhcCCCCCcccEEEcCC---HHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence 445666666654 2 467999999 9999999999998 799999999999999988875 3577777
Q ss_pred EeCC-------CCHHHHHHhhhcC------CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079 172 FVDI-------SDHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP 235 (450)
Q Consensus 172 ~v~~-------~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~ 235 (450)
.++. .|+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+..
T Consensus 208 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~ 286 (500)
T 3tcm_A 208 PYYLNESTGWGLETSDVKKQL-EDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVD 286 (500)
T ss_dssp EEECBTTTTSBCCHHHHHHHH-HHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred EEecccccCCCCCHHHHHHHH-HHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCC
Confidence 7663 3899999998 43 7899999999999999976 6677778999999999999996544321
Q ss_pred ----c-------CC------CCeEEEeCCCCcc-ccCccceEEEEEc---CHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079 236 ----A-------RL------GADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFE 294 (450)
Q Consensus 236 ----~-------~~------g~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~ 294 (450)
. .+ ...++++|+||.+ |++|.|+ ||++. ++++++.+...+. .....+.+.+.++..
T Consensus 287 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~ 363 (500)
T 3tcm_A 287 NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG-GYFEITGFSAPVREQIYKIAS--VNLCSNITGQILASL 363 (500)
T ss_dssp TCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC-EEEEEESCCTTHHHHHHHHHH--TTCCCCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce-EEEEEeCCCHHHHHHHHHHHh--cccCCCHHHHHHHHH
Confidence 0 11 1247889999999 8899998 99876 8888888876554 112333344444444
Q ss_pred HHccC-----------CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079 295 LSERI-----------PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362 (450)
Q Consensus 295 ~~~~~-----------~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 362 (450)
++... +++....+++.++++.+.+.|+++ ++.+..|. .|.++++.+.-.
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------------g~~~~~~~~~lp 424 (500)
T 3tcm_A 364 VMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE-------------------GAMYVFPQICLP 424 (500)
T ss_dssp HHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-------------------BTTEECCEECCC
T ss_pred HhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC-------------------eEEEEeeeecCc
Confidence 44421 223445566788899999999887 33443332 344556444311
Q ss_pred HH------------HHHH-HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CC
Q 013079 363 EK------------ANRL-MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GT 427 (450)
Q Consensus 363 ~~------------~~~~-~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~ 427 (450)
.. ...+ ...|.. .| +.+..|+.+.. ....+.||||++ . ++
T Consensus 425 ~~~~~~~~~~g~~~~~~~~~~ll~~---~g-I~v~pg~~f~~--------------------~~g~~~iRis~~-~~~e~ 479 (500)
T 3tcm_A 425 QKAIEAAKAANKAPDAFYALRLLES---TG-IVVVPGSGFGQ--------------------VPGTWHFRCTIL-PQEDK 479 (500)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH---HC-EECEESTTTCC--------------------CTTCCBEEEESC-SCTTT
T ss_pred hhhHHHHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCC--------------------CCCCCEEEEEEC-CCHHH
Confidence 10 1122 233433 23 67776655421 011468999999 5 56
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 013079 428 LDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 428 ~~~~i~~l~~al~~~~~~ 445 (450)
+++.++.|.++++++.++
T Consensus 480 i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 480 IPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888899999888877653
No 107
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.95 E-value=8.9e-27 Score=235.57 Aligned_cols=264 Identities=20% Similarity=0.264 Sum_probs=204.0
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH--
Q 013079 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT-- 159 (450)
Q Consensus 86 n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~-- 159 (450)
++.++|.|+ ++.++++++.+++++|.+...+ ++| |++|+.+++.+++++||+|++.. +.|.++...+.
T Consensus 55 ~~~~g~~y~---~~~~~~l~~~la~~~g~~~~~~~i~~~s---Gt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~ 128 (431)
T 3ht4_A 55 IPTTGYGYD---DIGRDTLEKVYADVFGAEAGLVRPQIIS---GTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVR 128 (431)
T ss_dssp CCCCTTCCS---CHHHHHHHHHHHHHTTCSEECCBTTSCS---HHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSS
T ss_pred CCCCCCCCC---hhhHHHHHHHHHHHhCCCcccccceeeC---HHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhc
Confidence 345556665 4568999999999999987755 678 99999999999999999999998 99998887652
Q ss_pred ----HhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEec-CCCCccc---ccCHHHHHHHHHh--cCCEEEE
Q 013079 160 ----HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES-ISNPTLA---VANIPELSRLAHD--KGVTVVV 224 (450)
Q Consensus 160 ----~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~-~~NptG~---v~~l~~I~~la~~--~gi~liv 224 (450)
..+.. .|+++++++.+ |+++|++++ +++|++|++++ |+||+|. +.++++|+++|++ +|+++|+
T Consensus 129 g~~~~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~liv 206 (431)
T 3ht4_A 129 GKGVGSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFV 206 (431)
T ss_dssp SCSSSCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ccccchHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 22233 68999999874 999999999 88999999995 6666554 5679999999999 9999999
Q ss_pred eCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh--hhccCCCchHHHHHHHHccCC
Q 013079 225 DNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSERIP 300 (450)
Q Consensus 225 D~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~~~ 300 (450)
|++|+.+. .++..+++|++++|+||++|+.+...||++++++++++.+....... ....++++. .++.+...++
T Consensus 207 Dea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~ 284 (431)
T 3ht4_A 207 DNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFF 284 (431)
T ss_dssp ECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHH
T ss_pred eCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHH--HHHHHHhHhh
Confidence 99995543 56777899999999999988754445699999999998887644311 112222222 1222344556
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 374 (450)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~ 374 (450)
.+..+++++.+++.++.+.|++++.++ +|. ++++ +.+.++.|.+++.+.+.+|++.|+.
T Consensus 285 ~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~-------------~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 285 LAPHVAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP-------------RTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC-------------CSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC-------------CccEEEEEEeCCHHHHHHHHHHHHh
Confidence 677788889999999999999998877 565 3333 2455899999988888999999986
No 108
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=2.6e-26 Score=229.24 Aligned_cols=295 Identities=14% Similarity=0.130 Sum_probs=201.6
Q ss_pred CChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 97 FNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
..+..+++++.+++++|.+ .+++|+| |++|+.+++.+++++||+|+++.++|+++. .. ..... .|.++.++
T Consensus 50 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v 123 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNIATFCLSAS---GHGGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEcCc---HHHHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEE
Confidence 3467899999999999974 4789999 999999999999999999999999999853 11 12122 58888888
Q ss_pred CC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEe
Q 013079 174 DI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVH 245 (450)
Q Consensus 174 ~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~ 245 (450)
+. .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|+++. ....+....++|+++.
T Consensus 124 ~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 202 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDAL-LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYT 202 (393)
T ss_dssp ECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEC
T ss_pred eCCCCCCCCHHHHHHHH-hccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEE
Confidence 74 3899999999 66 89999999999999999999999999999999999999983 2223333457899999
Q ss_pred CCCCc-cccCccceEEEEEcCHHHHHHHHHHh---hhhh-----------------hccCCC-chHHHHH-HHHccC--C
Q 013079 246 SISKF-ISGGADIIAGAVCGPANLVNSMMDLH---QGAL-----------------MLLGPT-MNPKVAF-ELSERI--P 300 (450)
Q Consensus 246 S~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~---~~~~-----------------~~~g~~-~~~~~a~-~~~~~~--~ 300 (450)
|+||+ +|++| + |+++.++++++.+.... ..+. ...+.. .....+. .++... .
T Consensus 203 s~sK~l~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 279 (393)
T 2huf_A 203 GSQKVLGAPPG--I-TPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEE 279 (393)
T ss_dssp CSSSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCC--e-EEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99997 45666 4 88888988888776431 1000 011121 2222211 122222 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 380 (450)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~ 380 (450)
.+....+++.++++++.+.|++++..+..|. . ...+++++|.++.......+.+.|... +|
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g- 340 (393)
T 2huf_A 280 GLPALIARHEDCAKRLYRGLQDAGFELYADP-----K-----------DRLSTVTTIKVPQGVDWLKAAQYAMKT--YL- 340 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-----G-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCeeccCc-----c-----------ccCCcEEEEEcCCCCCHHHHHHHHHHh--CC-
Confidence 2555667778899999999988765543321 0 012458889986222245666666431 23
Q ss_pred cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCC----HHHHHHHHHHHHHHhhh
Q 013079 381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGT----LDQRWSQFEKALSRMQD 444 (450)
Q Consensus 381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~----~~~~i~~l~~al~~~~~ 444 (450)
+.+..|..+ ..++.||||+ + ..+ .+++++.|.+++.+++.
T Consensus 341 i~v~~g~~~-----------------------~~~~~~Ri~~~~-~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 341 VEISGGLGP-----------------------TAGQVFRIGLMG-QNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp EECBCCCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEecCccc-----------------------ccCCEEEEEccc-CcCCHHHHHHHHHHHHHHHHHcCC
Confidence 555555321 0257899999 6 433 44445555555555443
No 109
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=2.1e-26 Score=232.22 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHh----CCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 101 VLNLSRQMAALE----GTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 101 ~~~l~~~iA~l~----g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
..++++.+++++ +.+ .+++|+| |++|+.+++++++++||+|+++.|.|+++...+. ..|.++..+
T Consensus 82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v 153 (418)
T 3rq1_A 82 IPDFLCAAEKECFGNFRPEGHIRSIATAG---GTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTY 153 (418)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESH---HHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEE
T ss_pred hHHHHHHHHHHHhcccCccccccEEECCc---hHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEE
Confidence 445666666644 667 8999999 9999999999999999999999999999988775 368888888
Q ss_pred CCC------CHHHHHHhhhcC----Cce-EEEEecC-CCCcccccCHH---HHHHHHH------hcCCEEEEeCCCCCCC
Q 013079 174 DIS------DHEMVNSAIVQG----RTK-VLYFESI-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLV 232 (450)
Q Consensus 174 ~~~------d~~~l~~ai~~~----~t~-lv~i~~~-~NptG~v~~l~---~I~~la~------~~gi~livD~~~~~~~ 232 (450)
+.+ |+++|++++ ++ +++ +|++++| |||||.+.+.+ +|+++|+ ++|+++|+|++|..+.
T Consensus 154 ~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~ 232 (418)
T 3rq1_A 154 SLFDEHNNFNHEAFQNRV-NELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS 232 (418)
T ss_dssp CSBCTTSSBCHHHHHHHH-HHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS
T ss_pred eeeCCCCCcCHHHHHHHH-HHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence 752 789999988 43 566 8889999 99999998855 5556666 8999999999996554
Q ss_pred CCc------cC----CCC---eEEEeCCCCccccCccceEEEEEc---CHHHHHHHHHHhhhhhh--cc-CCCchHHHHH
Q 013079 233 LSP------AR----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALM--LL-GPTMNPKVAF 293 (450)
Q Consensus 233 ~~~------~~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~--~~-g~~~~~~~a~ 293 (450)
... .. +.. .++++|+||.+|++|+|+ ||+++ ++++++.+......... .. .+...+.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 311 (418)
T 3rq1_A 233 GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMA 311 (418)
T ss_dssp SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Confidence 431 11 112 388899999999999998 99887 88898888765442211 11 2223333333
Q ss_pred HHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079 294 ELSERIP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 366 (450)
Q Consensus 294 ~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~ 366 (450)
.++...+ .+....+++.++++.+.+.|++++..+..|. .|.++++.+++ ..
T Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~---~~ 369 (418)
T 3rq1_A 312 NIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-------------------GGFFITIPTDS---AN 369 (418)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------SSSEEEEECTT---HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------------ceEEEEcCCCC---HH
Confidence 3332221 1123335567888889999988765543222 34567777754 34
Q ss_pred HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079 367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 442 (450)
.+.+.|.. .| +.+..| .+.||||++ . +++++.++.|.++++++
T Consensus 370 ~~~~~l~~---~g-i~v~~g----------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 370 AICEELKK---EH-IYVIAL----------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHHHHH---TT-EECEEC----------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHh---CC-EEEecC----------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 55555553 23 444433 357999998 4 33444455666665554
No 110
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=1e-26 Score=229.27 Aligned_cols=289 Identities=15% Similarity=0.140 Sum_probs=199.4
Q ss_pred hhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhH-HHHHHHhCCCccCeeEEE
Q 013079 99 PTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGT-HALLTHFFPRACNITTTF 172 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~-~~~~~~~~~~~~g~~v~~ 172 (450)
+..+++++.+|+++|.. .+++|+| |++|+++++.+++++||+|++.+ +.|+.. ...+. ..|.++.+
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-----~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGS---GSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG-----LMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESC---HHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH-----HHTCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecC---hHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH-----HhCCceEE
Confidence 67899999999999842 5899999 99999999999999999887765 555543 23332 25777777
Q ss_pred eCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079 173 VDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 244 (450)
Q Consensus 173 v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~ 244 (450)
++. .|+++|++++.+. ++++|++.+++||||.+.|+++|.++|+++|+++|+|++|+ ....+....++|+++
T Consensus 109 v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~ 188 (366)
T 1m32_A 109 YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLI 188 (366)
T ss_dssp EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred EeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEE
Confidence 765 3899999998432 58999999999999999999999999999999999999984 222333345789999
Q ss_pred eCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhh----------h----hccCCCchHH---HHHHHHccCC-c--HH
Q 013079 245 HSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGA----------L----MLLGPTMNPK---VAFELSERIP-H--LG 303 (450)
Q Consensus 245 ~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~----------~----~~~g~~~~~~---~a~~~~~~~~-~--l~ 303 (450)
.|+||++ ++.| + |+++.++++++.+....... . .....+.+.. ++..++.... . +.
T Consensus 189 ~s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~ 265 (366)
T 1m32_A 189 SSANKCIQGVPG--F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVA 265 (366)
T ss_dssp EESSSTTCCCSS--E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ecCcccccCCCc--e-EEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHh
Confidence 9999977 5444 5 99999888776543210000 0 0000122222 2222222221 1 34
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccc
Q 013079 304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFM 381 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i 381 (450)
...+++.++++++.+.|++++..+..|. . ...|.+++|.++. ......+.+.|... | +
T Consensus 266 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i 325 (366)
T 1m32_A 266 ARHQRYQQNQRSLVAGMRALGFNTLLDD-----E-----------LHSPIITAFYSPEDPQYRFSEFYRRLKEQ---G-F 325 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCG-----G-----------GBCSSEEEEECCCCTTCCHHHHHHHHHHT---T-E
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeeccCc-----h-----------hcCceEEEEEcCccCCCCHHHHHHHHHHC---C-E
Confidence 5566778899999999988755443321 0 0135589999873 22356677777642 3 5
Q ss_pred ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.+..|..+ ..+.||||++ ..++++.++.+.++|.++.
T Consensus 326 ~v~~~~~~------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 326 VIYPGKVS------------------------QSDCFRIGNI-GEVYAADITALLTAIRTAM 362 (366)
T ss_dssp ECEECCCS------------------------SSCEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred EEECCcCC------------------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 55555321 1478999999 8777888888888887664
No 111
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=9e-27 Score=234.44 Aligned_cols=316 Identities=15% Similarity=0.122 Sum_probs=210.3
Q ss_pred cccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc------
Q 013079 68 FTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC------ 138 (450)
Q Consensus 68 ~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~------ 138 (450)
+..+. .+++.+.+...++++.....|.....+..+++++.+++++|.+ .+++|+| |++++.+++.+++
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~al~~al~~~~~~~~~~ 115 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDT---TSINLFKVLSAALRVQATR 115 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCC---hhHHHHHHHHhhccccccc
Confidence 44445 3777777766566653221232223467899999999999975 7899999 9999998888776
Q ss_pred cCCCE-EEEeCCCchhHHHHHHHhCCCcc--CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079 139 SSGGH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 215 (450)
Q Consensus 139 ~~gd~-Vi~~~~~y~~~~~~~~~~~~~~~--g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la 215 (450)
++||+ |+++.+.|+++...+..+... . |.++.+++. +++|++++ ++++++|++++++||||.+.|+++|.++|
T Consensus 116 ~~gd~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 191 (416)
T 1qz9_A 116 SPERRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALS 191 (416)
T ss_dssp STTCCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred CCCCcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEeccccCcccccCHHHHHHHH
Confidence 88986 566667888766554322111 3 888989886 78899988 77899999999999999999999999999
Q ss_pred HhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhhh-------------
Q 013079 216 HDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA------------- 279 (450)
Q Consensus 216 ~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~------------- 279 (450)
+++|+++|+|++|+ ....+...+++|+++.|+||+++ +++. + |+++.++++++.+.....++
T Consensus 192 ~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~-~-g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~ 269 (416)
T 1qz9_A 192 HECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-Q-AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY 269 (416)
T ss_dssp HHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-C-CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSC
T ss_pred HHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC-e-EEEEECHHHHhccCCCccccCccccccCCCCcc
Confidence 99999999999983 22223233478999999999974 4442 3 88888877765553321110
Q ss_pred -------hhccCCC-chHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHH
Q 013079 280 -------LMLLGPT-MNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSM 344 (450)
Q Consensus 280 -------~~~~g~~-~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~ 344 (450)
....++. .... ++..++.. .+.+....+++.++++++.+.|+++ +..+..|.. +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---~-------- 338 (416)
T 1qz9_A 270 EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---H-------- 338 (416)
T ss_dssp CBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---G--------
T ss_pred CCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCC---H--------
Confidence 0111221 1122 22222222 2456667778888999999999875 455543320 0
Q ss_pred hccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079 345 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 424 (450)
Q Consensus 345 ~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~ 424 (450)
...+++++|.+++ ...+.+.|... | +.+.. ..++.||||++
T Consensus 339 ----~~~~~~~~~~~~~---~~~l~~~l~~~---g-i~~~~---------------------------~~~~~lRis~~- 379 (416)
T 1qz9_A 339 ----AKRGSHVSFEHPE---GYAVIQALIDR---G-VIGDY---------------------------REPRIMRFGFT- 379 (416)
T ss_dssp ----GGBCSEEEEECTT---HHHHHHHHHTT---T-EECEE---------------------------ETTTEEEEECC-
T ss_pred ----HHcCCEEEEecCC---HHHHHHHHHhC---C-cEecc---------------------------CCCCeEEEeCc-
Confidence 0135689999875 34566666542 2 22210 01478999997
Q ss_pred C-CCHHHHHHHHHHHHHHh
Q 013079 425 L-GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 425 ~-~~~~~~i~~l~~al~~~ 442 (450)
. ..+++.++.+.++|.++
T Consensus 380 ~~~~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 380 PLYTTFTEVWDAVQILGEI 398 (416)
T ss_dssp TTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 4 45566666666666554
No 112
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.95 E-value=3.8e-26 Score=226.48 Aligned_cols=307 Identities=17% Similarity=0.202 Sum_probs=218.0
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
..+..+++++.+|+++|.+.+++|+| ||+|+++++.++ +++||+|+++.++|+++...+. ..|.++.+++.
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~s---Gt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~ 104 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCAN---GTDALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDI 104 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence 46789999999999999999999999 999999999998 8999999999999999988875 36888888876
Q ss_pred C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEEeC
Q 013079 176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHS 246 (450)
Q Consensus 176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~~S 246 (450)
+ |+++|++++ ++++++|+ ++||+|...|+++|.++|+++|+++|+|++|+ +..++....+. |+++.|
T Consensus 105 ~~~~~~~d~~~l~~~i-~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S 180 (367)
T 3nyt_A 105 DPRTYNLDPQLLEAAI-TPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTS 180 (367)
T ss_dssp CTTTCSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEE
T ss_pred CCccCCcCHHHHHHhc-CcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEE
Confidence 5 889999999 88899888 78999999999999999999999999999983 33333333333 999999
Q ss_pred C--CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh--------ccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079 247 I--SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 315 (450)
Q Consensus 247 ~--sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 315 (450)
+ +|+++++|. ||+++. ++++.+.+...+..... .....+....++.....++.++...++.++++++
T Consensus 181 f~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~ 258 (367)
T 3nyt_A 181 FFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAE 258 (367)
T ss_dssp CCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899997675 588876 57788877765542110 0123344555555544556667777777888899
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
+.+.|++.+..+. ..+.... ....++.+.+++ .+.+...|...+ |.++.+....+-..+
T Consensus 259 ~~~~L~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~G----I~~~~~~~~~~~~~~ 317 (367)
T 3nyt_A 259 YDLSLKQVGIGTP--FIEVNNI------------SVYAQYTVRMDN---RESVQASLKAAG----VPTAVHYPIPLNKQP 317 (367)
T ss_dssp HHHHHHHTTCCCC--CCCTTEE------------CCCSSEEEECSS---HHHHHHHHHHHT----CCCBCSCSSCGGGSG
T ss_pred HHHHhccCCeecc--CCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CceeccCCCccccCh
Confidence 9999998764322 1111000 112346666664 345666666433 566665432222222
Q ss_pred ccc-cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 396 GSS-TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 396 ~~~-~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
... ....++...... ...||++++ ...++++++.+.+++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~----~~~l~lp~~-~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 318 AVADEKAKLPVGDKAA----TQVMSLPMH-PYLDTASIKIICAALTNLE 361 (367)
T ss_dssp GGCCTTCCCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHC--
T ss_pred hhhccCCCChHHHHHH----hCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 221 122232222222 478999999 9999999999999887653
No 113
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=2e-26 Score=229.62 Aligned_cols=291 Identities=14% Similarity=0.176 Sum_probs=200.3
Q ss_pred ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhH--HHHHHHhCCCccCeeEEE
Q 013079 98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTF 172 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~--~~~~~~~~~~~~g~~v~~ 172 (450)
.+..+++++.++++++.+ .+++|+| |++|+.+++++++++||+|+++.+.|.+. ...+. ..|.++..
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~g---g~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~g~~~~~ 126 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGS---GHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD-----RIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCC---TTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCC---cHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH-----HcCCceEE
Confidence 456789999999999864 4789999 99999999999999999999998888643 23332 26778887
Q ss_pred eCCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079 173 VDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 244 (450)
Q Consensus 173 v~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~ 244 (450)
++.+ |+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+....++|+++
T Consensus 127 ~~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~ 205 (393)
T 3kgw_A 127 MIKKPGEHYTLQEVEEGL-AQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMY 205 (393)
T ss_dssp EECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEE
T ss_pred EeCCCCCCCCHHHHHHHH-hhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEE
Confidence 7743 899999999 55 89999999999999999999999999999999999999983 333444556889999
Q ss_pred eCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhhh-------------------hccCCCchH--HHHH-HHHccC--
Q 013079 245 HSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGAL-------------------MLLGPTMNP--KVAF-ELSERI-- 299 (450)
Q Consensus 245 ~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~~g~~~~~--~~a~-~~~~~~-- 299 (450)
.|+||++ ++.| + |+++.++++++.+........ .....+.+. ..+. .++...
T Consensus 206 ~s~sK~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 282 (393)
T 3kgw_A 206 SSSQKVLNAPPG--I-SLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAE 282 (393)
T ss_dssp EESSSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ecCcccccCCCc--e-eEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999976 4555 5 999999998887754221100 001112222 2221 222211
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079 300 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 379 (450)
Q Consensus 300 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g 379 (450)
..+....+++.++++++.+.|++++.++..|.. ....+.+++|.++.......+.+.|... +|
T Consensus 283 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g 345 (393)
T 3kgw_A 283 QGLENCWRRHREATAHLHKHLQEMGLKFFVKDP---------------EIRLPTITTVTVPAGYNWRDIVSYVLDH--FS 345 (393)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSG---------------GGBCSSEEEEECCTTBCHHHHHHHHHHH--HC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCeeccCCh---------------hhcCCeEEEEeCCCCCCHHHHHHHHHHh--CC
Confidence 235666777889999999999988665433220 0124567889987332355666666542 23
Q ss_pred ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCC----CHHHHHHHHHHHHHHh
Q 013079 380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLG----TLDQRWSQFEKALSRM 442 (450)
Q Consensus 380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~----~~~~~i~~l~~al~~~ 442 (450)
+.+..|..+ ..++.||||+ + .. +.++.++.|.++++++
T Consensus 346 -i~v~~g~~~-----------------------~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 346 -IEISGGLGP-----------------------TEERVLRIGLLG-YNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp -EECBCCCGG-----------------------GTTTEEEEECCG-GGCCHHHHHHHHHHHHHHHHHS
T ss_pred -EEEeCCccc-----------------------CCCCEEEEEecc-cCCCHHHHHHHHHHHHHHHHhh
Confidence 555555321 1257899998 7 53 3444445555555444
No 114
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.95 E-value=2.7e-26 Score=230.04 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHhC--------CCeEEE--ecChHHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079 101 VLNLSRQMAALEG--------TEAAYC--TASDKAGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACN 167 (450)
Q Consensus 101 ~~~l~~~iA~l~g--------~~~~~~--tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 167 (450)
..++++.+|++++ .+++++ |+| |++|+++++..+. ++||+|++++|+|.++...+. ..|
T Consensus 73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G---~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g 144 (401)
T 7aat_A 73 LADFTRASAELALGENSEAFKSGRYVTVQGIS---GTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAG 144 (401)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTT
T ss_pred CHHHHHHHHHHhcCCCccccccCceEEEecCc---chHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcC
Confidence 4567788887764 567766 999 9999999887664 889999999999999988875 357
Q ss_pred eeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079 168 ITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP 235 (450)
Q Consensus 168 ~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~ 235 (450)
.++..++.+ |++++++.++ ++++++|++++||||||.+.+ +++|+++|+++|+++|+|++|..+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 224 (401)
T 7aat_A 145 LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD 224 (401)
T ss_dssp CEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred CeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCC
Confidence 777777642 7787776663 357899999999999998865 7789999999999999999996665432
Q ss_pred ------------cCCCCeEEEeCCCCccccCccceEEEEEc---CHHH----HHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079 236 ------------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL----VNSMMDLHQGALMLLGPTMNPKVAFELS 296 (450)
Q Consensus 236 ------------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 296 (450)
.....++++.|+||.+|++|+|+ ||++. +++. ...+....... ....+...+..+..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 302 (401)
T 7aat_A 225 INRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPM-YSNPPMNGARIASLIL 302 (401)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhcCCcEEEEecCCcccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHh
Confidence 11256789999999999999998 88764 5553 34444333311 1122222222232222
Q ss_pred cc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 297 ER-------IPHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 297 ~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
.. .+++.+..+++.++++++.+.|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 21 22344555677888999999998874
No 115
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.95 E-value=5.9e-27 Score=237.18 Aligned_cols=335 Identities=15% Similarity=0.099 Sum_probs=207.9
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc--------cCCC
Q 013079 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC--------SSGG 142 (450)
Q Consensus 73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~--------~~gd 142 (450)
.+++.+.+...+++|.+.|.+++...+..+++++.||+++|.+ .+++|+| |++|+++++.+++ ++||
T Consensus 35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~~~~~gd 111 (432)
T 3a9z_A 35 IQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSG---GTESNNLVIHSTVRCFHEQQTLQGR 111 (432)
T ss_dssp HHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESC---HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCC---hHHHHHHHHHHHHhhhhhccccCCc
Confidence 3677777666677887767666656677899999999999974 6899999 9999999999876 4787
Q ss_pred EEEEeCCCc-------------hhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcc
Q 013079 143 HVVAARTLY-------------GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTL 203 (450)
Q Consensus 143 ~Vi~~~~~y-------------~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG 203 (450)
+|++..|.| +++...+..+... .|.++.+++.+ |+++|++++ ++++++|++++|+||||
T Consensus 112 ~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG 189 (432)
T 3a9z_A 112 TVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVEDILAAV-RPTTCLVTIMLANNETG 189 (432)
T ss_dssp ----------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEECCSBCTTTC
T ss_pred cccccccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHHHHHhc-cCCceEEEEECcccCcc
Confidence 666555555 4444444332222 58888888753 789999999 78899999999999999
Q ss_pred cccCHHHHHHHHHhcC----------CEEEEeCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HH
Q 013079 204 AVANIPELSRLAHDKG----------VTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VN 270 (450)
Q Consensus 204 ~v~~l~~I~~la~~~g----------i~livD~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~ 270 (450)
.+.|+++|.++|+++| +++|+|++|+... .+....+.|+++.|+||++| + ++ |+++.+++. ..
T Consensus 190 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~~-G~~~~~~~~~~~ 265 (432)
T 3a9z_A 190 VIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--RI-GALYVRGVGKLT 265 (432)
T ss_dssp BBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--SC-EEEEETTBTTTB
T ss_pred cccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-C--cc-eEEEEccccccC
Confidence 9999999999999999 9999999993322 22223478999999999986 3 35 998887654 22
Q ss_pred HHHHHhhh----hhhccCCC--chHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHH
Q 013079 271 SMMDLHQG----ALMLLGPT--MNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK 342 (450)
Q Consensus 271 ~l~~~~~~----~~~~~g~~--~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~ 342 (450)
.+.....+ .....+.. ....++..++... +.+....+++.++++++.+.|+++ +..+..++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------- 337 (432)
T 3a9z_A 266 PLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFP-------- 337 (432)
T ss_dssp CCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCT--------
T ss_pred CcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCC--------
Confidence 22111000 00011211 1121221222211 234455666788889999999875 44443221100
Q ss_pred HHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCe
Q 013079 343 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGL 417 (450)
Q Consensus 343 ~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~ 417 (450)
+....+++++|.+++. .....+++.+.. +.++.|..|+.... ..........|+. .+.
T Consensus 338 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~~~-------~~~~~~l~~~g~~~~~~~~~ 400 (432)
T 3a9z_A 338 ----GVERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSDHE-------DRPSPVLLSCGIPVDVARNA 400 (432)
T ss_dssp ----TCCBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGGGT-------TSCCHHHHHTTCCHHHHTTE
T ss_pred ----cccCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCCCC-------CCccHHHHhcCCCccccCce
Confidence 0012456888998742 123456665542 56677766543210 0011222334443 478
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 418 VRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 418 iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
||||++ ..++++.++.+.++|.++
T Consensus 401 iRis~~-~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 401 VRLSVG-RSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp EEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred EEEEcC-CCCCHHHHHHHHHHHHHH
Confidence 999999 765566666665555543
No 116
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=2.8e-26 Score=231.68 Aligned_cols=291 Identities=12% Similarity=0.086 Sum_probs=200.7
Q ss_pred hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHH--HHHHHhcc--C---------CCEEEEeCCCchhHHHHHHHhCC
Q 013079 99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFP 163 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~--~al~~l~~--~---------gd~Vi~~~~~y~~~~~~~~~~~~ 163 (450)
+...++++.||++++. +.+++|+| ++++++ +++++++. + ||+|+++.|+|+++...+.
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~---- 142 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNN---SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ---- 142 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSS---CHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH----
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCC---cHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH----
Confidence 4467899999999986 46899999 999998 88888877 7 5999999999999988775
Q ss_pred CccCeeEEEeCCC----CHHHHHHhhh-cCCceEEEEe-cCCCCcccccCHH---HHHHHH-HhcCCEEEEeCCCCCC--
Q 013079 164 RACNITTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPL-- 231 (450)
Q Consensus 164 ~~~g~~v~~v~~~----d~~~l~~ai~-~~~t~lv~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~~~~~-- 231 (450)
..|.++..++.+ |+++|++++. .+++++|+++ ++|||||.+.+.+ +|+++| +++|+++|+|++|..+
T Consensus 143 -~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~ 221 (423)
T 3ez1_A 143 -TLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHL 221 (423)
T ss_dssp -HHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBC
T ss_pred -HcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhc
Confidence 257777777653 8999999994 4689999865 8999999998876 888888 8999999999999632
Q ss_pred CC-------Ccc-------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079 232 VL-------SPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 297 (450)
Q Consensus 232 ~~-------~~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~ 297 (450)
.. +.. ..+.++++.|+||. +++|.|+ ||++.++++++.+....... ....+.+.+.++...+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~ 298 (423)
T 3ez1_A 222 VEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGL-GFVASSEDNIRWLSKYLGAQ-SIGPNKVEQARHVKFLT 298 (423)
T ss_dssp CSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSC-EEEEECHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcce-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHH
Confidence 11 111 23678999999999 5689998 99999999998887765521 12334444444444444
Q ss_pred c-CC----cHHHHHHHHHHHHHHHHHHHHh----CC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079 298 R-IP----HLGLRMKEHCHRALIFARRMKK----LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 366 (450)
Q Consensus 298 ~-~~----~l~~~~~~~~~~~~~l~~~L~~----~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~ 366 (450)
. .. ++....+.+.++++.+.+.|.+ .+ ..+..|. .|.++++.++.. ...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~ 358 (423)
T 3ez1_A 299 EYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-------------------GGYFISLDTAEP-VAD 358 (423)
T ss_dssp HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHH
Confidence 3 22 2233334455666666666654 44 2333332 567899999843 245
Q ss_pred HHHHHhhcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079 367 RLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 442 (450)
Q Consensus 367 ~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 442 (450)
.+...+.. .| +.+.. |..+... .+..++.||||++ .. ++++.++.|.+++.++
T Consensus 359 ~~~~~l~~---~g-v~v~~~g~~~~~~------------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 359 RVVKLAEA---AG-VSLTPAGATYPAG------------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp HHHHHHHH---TT-EECCCTTTTSSTT------------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---CC-cEEecCcccccCC------------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 56666654 23 56555 4332110 0112588999999 64 3444455566666554
Q ss_pred h
Q 013079 443 Q 443 (450)
Q Consensus 443 ~ 443 (450)
.
T Consensus 416 ~ 416 (423)
T 3ez1_A 416 T 416 (423)
T ss_dssp H
T ss_pred H
Confidence 3
No 117
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=6.2e-26 Score=226.40 Aligned_cols=323 Identities=16% Similarity=0.173 Sum_probs=219.8
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCch
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYG 152 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~ 152 (450)
+++.+.+... .+++...+...++++.||+++|.+..+++++ |++|+++++.++ +++||+|+++.++|+
T Consensus 21 ~a~~~~l~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~al~~~l~~l~~~~gd~Vi~~~~~~~ 89 (388)
T 1b9h_A 21 NGLVRALEQG--------QWWRMGGDEVNSFEREFAAHHGAAHALAVTN---GTHALELALQVMGVGPGTEVIVPAFTFI 89 (388)
T ss_dssp HHHHHHHHTS--------CCBTTTCSHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred HHHHHHHHcC--------CeeecCCHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCccH
Confidence 5666665431 1334456789999999999999988889999 999999999998 899999999999999
Q ss_pred hHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeC
Q 013079 153 GTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 226 (450)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~ 226 (450)
++...+. ..|.++.+++.+ |+++|++++ ++++++|+ |+||||.+.++++|.++|+++|+++|+|+
T Consensus 90 ~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~ 160 (388)
T 1b9h_A 90 SSSQAAQ-----RLGAVTVPVDVDAATYNLDPEAVAAAV-TPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDA 160 (388)
T ss_dssp HHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEEC
T ss_pred HHHHHHH-----HcCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEec
Confidence 9988774 368888888753 899999999 77888887 89999999999999999999999999999
Q ss_pred CCCC-CCCC---ccCCCCeEEEeCCC--CccccCccceEEEEEcCHH-H--HHHHHHHhhhhh---------hccCC--C
Q 013079 227 TFSP-LVLS---PARLGADVVVHSIS--KFISGGADIIAGAVCGPAN-L--VNSMMDLHQGAL---------MLLGP--T 286 (450)
Q Consensus 227 ~~~~-~~~~---~~~~g~di~~~S~s--K~~g~~g~~igG~l~~~~~-~--~~~l~~~~~~~~---------~~~g~--~ 286 (450)
+|+. .... ...++ |+++.|+| |++++ .++ |+++.+++ + ++.+...+.... ...|. .
T Consensus 161 a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g--~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 236 (388)
T 1b9h_A 161 AHAHGARWQGKRVGELD-SIATFSFQNGKLMTA--GEG-GAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR 236 (388)
T ss_dssp TTCTTCEETTEEGGGSS-SCEEEECCTTSSSCS--SSC-EEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred chhcCCccCCeeccccc-ceEEEEccCCCcccC--CCe-EEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCC
Confidence 9943 3221 22334 56666665 66653 454 99887765 5 566654332110 01122 2
Q ss_pred chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--H
Q 013079 287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--E 363 (450)
Q Consensus 287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~ 363 (450)
+++..++.+...++.+.++.+++.++++++.+.|++++ ..+..+..... ...+.+++|.+++. .
T Consensus 237 ~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 303 (388)
T 1b9h_A 237 LNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRAD-------------RNSHYMAMFRIPGLTEE 303 (388)
T ss_dssp CBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCC-------------BCCCSEEEEECTTCCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCC-------------ccceEEEEEEeCCcCcc
Confidence 44444444444567777788888889999999999873 44432210000 02456899999842 3
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccc---cCC--------CCCHHHHHhcCCCCCeEEEEeCCCCC-HHHH
Q 013079 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS---TSS--------ELNAEEKALAGISAGLVRMSVGYLGT-LDQR 431 (450)
Q Consensus 364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~---~~~--------~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~ 431 (450)
....+.+.|... | |.++.+...+- ..+... ... .++...... .+.|||+++ ... +++.
T Consensus 304 ~~~~l~~~L~~~---g-I~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~-~~~~t~ed 373 (388)
T 1b9h_A 304 RRNALVDRLVEA---G-LPAFAAFRAIY-RTDAFWELGAPDESVDAIARRCPNTDAIS----SDCVWLHHR-VLLAGEPE 373 (388)
T ss_dssp HHHHHHHHHHHT---T-CCEEECCCCGG-GSHHHHHSSCCSSCHHHHHHTCHHHHHHH----HHEEEEEGG-GGGSCHHH
T ss_pred cHHHHHHHHHHC---C-CCcccccCccc-cChHhHhcCCCcccccccccCCHHHHHHH----hCeEEecCC-CCCCCHHH
Confidence 467788887753 3 56665543110 000000 000 111121111 357999999 877 8888
Q ss_pred HHHHHHHHHHhh
Q 013079 432 WSQFEKALSRMQ 443 (450)
Q Consensus 432 i~~l~~al~~~~ 443 (450)
++.+.++|.++.
T Consensus 374 i~~~~~~l~~~~ 385 (388)
T 1b9h_A 374 LHATAEIIADAV 385 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899988887764
No 118
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.95 E-value=4.9e-26 Score=226.02 Aligned_cols=307 Identities=16% Similarity=0.189 Sum_probs=212.4
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
..+..+++++.+|+++|.+.+++|+| |++|+++++.++ +++||+|+++.++|+++...+. ..|.++.+++.
T Consensus 34 ~~~~~~~l~~~la~~~~~~~~i~~~s---gt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~ 105 (373)
T 3frk_A 34 LGDEDKKFEQEFADYCNVNYCIGCGN---GLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEP 105 (373)
T ss_dssp SSHHHHHHHHHHHHHHTSSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECE
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEec
Confidence 46789999999999999999999999 999999999999 8999999999999999988775 35888888876
Q ss_pred C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeC
Q 013079 176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHS 246 (450)
Q Consensus 176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S 246 (450)
+ |+++|++++ ++++++|+ ++||||.+.|+++|.++|+++|+++|+|++|+ +..++....+ .|+++.|
T Consensus 106 ~~~~~~~d~~~l~~~l-~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S 181 (373)
T 3frk_A 106 DIRTYNIDPSLIESAI-TEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFS 181 (373)
T ss_dssp ETTTTEECGGGTGGGC-CTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred cccccCcCHHHHHHhc-CCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEe
Confidence 5 889999999 77899888 67899999999999999999999999999983 2334444444 7999999
Q ss_pred CC--CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079 247 IS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALI 315 (450)
Q Consensus 247 ~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 315 (450)
++ |+++++|. ||+++.+ +++.+.+...+.+... ..| ..+....+.+....++.++...++..+++++
T Consensus 182 ~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~ 259 (373)
T 3frk_A 182 FYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQK 259 (373)
T ss_dssp CCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 99987553 5888765 5677777655442110 011 1234444444443445566666677777888
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
+.+.|++++ +..|..+.... ..-..+.+...+ ...+.+.|...+ |.++.+....+-..+
T Consensus 260 ~~~~l~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~g----I~v~~~~~~~~~~~~ 318 (373)
T 3frk_A 260 YIAGINNPN--VIIPVEADYAK------------HVWYTFVIRSEK---RDELQKYLNNNG----IGTLIHYPIPIHLQQ 318 (373)
T ss_dssp HHHHCCCTT--EECCCCCTTEE------------CCCSSEEEEESS---HHHHHHHHHHTT----BCCBCSCSSCGGGSG
T ss_pred HHHHhccCc--eEeccCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CCcccCcCCccccCh
Confidence 888887766 33333211000 011234455543 445666666433 666666432222222
Q ss_pred cccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 396 GSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 396 ~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.... ...++..+... .+.||||++ ...++++++.+.++|.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~----~~~lrl~~~-~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 319 AYKDLGFKTGNFPIAEKIA----NEILSIPIW-YGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp GGGGGCCCTTSSHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHTCC
T ss_pred HHHhcCCCCCCCHHHHHHH----hCEEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 1111 01122222211 378999999 9999999999999988764
No 119
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=1e-26 Score=241.81 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=127.3
Q ss_pred HHHHHHHHHHh----CC-------CeEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079 102 LNLSRQMAALE----GT-------EAAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRA 165 (450)
Q Consensus 102 ~~l~~~iA~l~----g~-------~~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~ 165 (450)
.++++.+|+++ +. +++++|+| |++|+++++.+ ++++||+|+++.|+|.++...+. .
T Consensus 141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G---~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-----~ 212 (533)
T 3f6t_A 141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEG---GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-----L 212 (533)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEH---HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-----G
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceEEEECC---HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-----H
Confidence 45566666554 32 57899999 99999999998 78899999999999999876653 3
Q ss_pred cCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccccCHH---HHHHHHH-hcCCEEEEeCCCCCCC
Q 013079 166 CNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLV 232 (450)
Q Consensus 166 ~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~~~ 232 (450)
.|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.+.+ +|+++|+ ++|+++|+|++|+.+.
T Consensus 213 ~g~~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~ 291 (533)
T 3f6t_A 213 KDYELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV 291 (533)
T ss_dssp GGSEEEEECCCEETTTTSEECHHHHHHHS-CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred cCCeEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence 56777777653 899999999 78999999999999999998766 8888888 6899999999996655
Q ss_pred CCccCC-----CCeEEEeCCCCccccCccceEEEEEcCHH
Q 013079 233 LSPARL-----GADVVVHSISKFISGGADIIAGAVCGPAN 267 (450)
Q Consensus 233 ~~~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~ 267 (450)
.....+ +.+++++|+||.+|++|+|+ ||++++++
T Consensus 292 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~ 330 (533)
T 3f6t_A 292 PNFKSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIALNEK 330 (533)
T ss_dssp TTCCCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEEESS
T ss_pred cCccCHhhcCCCCEEEEecCcccCCCcccce-EEEEECcH
Confidence 433222 46799999999999999998 89887654
No 120
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=7e-26 Score=221.67 Aligned_cols=262 Identities=16% Similarity=0.164 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHHhC---C--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 100 TVLNLSRQMAALEG---T--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 100 ~~~~l~~~iA~l~g---~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
...++++.||++++ . +.+++|+| +++++++++.++ ||+|+++ |+|+++...+. ..|.++..++
T Consensus 57 ~~~~lr~~la~~~~~~~~~~~~v~~~~G---~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~ 124 (335)
T 1uu1_A 57 PDEELIEKILSYLDTDFLSKNNVSVGNG---ADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVP 124 (335)
T ss_dssp SCHHHHHHHHHHHTCSSCCGGGEEEESS---HHHHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECC
T ss_pred chHHHHHHHHHHcCCCCCCHHHEEEcCC---hHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEec
Confidence 47889999999998 3 57999999 999999999987 8999999 99999887764 2577888877
Q ss_pred CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-Cc----cCCCCeEEE
Q 013079 175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SP----ARLGADVVV 244 (450)
Q Consensus 175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~~----~~~g~di~~ 244 (450)
.+ |++++ +++++|++++|+||||.+.+.+++.++++..| ++|+|++|..+.. .. ...+.++++
T Consensus 125 ~~~~~~~d~~~l------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~ 197 (335)
T 1uu1_A 125 LTKDLRIPEVNV------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVI 197 (335)
T ss_dssp CCTTSCCCCCCC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEE
T ss_pred cCCCCCCCHHHc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEE
Confidence 54 33332 47899999999999999999999999999889 9999999943321 11 123678999
Q ss_pred eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
.|+||.+|++|.|+ ||+++++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|++++
T Consensus 198 ~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g 273 (335)
T 1uu1_A 198 RTFSKAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG 273 (335)
T ss_dssp EESTTTTTCGGGCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecchhhcCCcccCe-EEEEeCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999899998 9999999998888765541 2333344444444443333456666778889999999998875
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079 325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404 (450)
Q Consensus 325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~ 404 (450)
..+ .|. .|+++++.++. .....+.+.|... | +.++.
T Consensus 274 ~~~-~~~-------------------~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~~------------------- 309 (335)
T 1uu1_A 274 YRI-TDS-------------------RGNFVFVFMEK-EEKERLLEHLRTK---N-VAVRS------------------- 309 (335)
T ss_dssp CCB-CCC-------------------CSSEEEEECCT-HHHHHHHHHHHHH---T-EEEEE-------------------
T ss_pred cEE-cCC-------------------CCeEEEEECCC-CCHHHHHHHHHHC---C-EEEEE-------------------
Confidence 443 232 35688999886 3356677776542 3 33221
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
.++.||||++ . . +.++.+.++|++
T Consensus 310 ---------~~~~iRis~~-~--~-~~i~~~~~~l~~ 333 (335)
T 1uu1_A 310 ---------FREGVRITIG-K--R-EENDMILRELEV 333 (335)
T ss_dssp ---------ETTEEEEECC-C--H-HHHHHHHHHHHC
T ss_pred ---------CCCeEEEEeC-C--H-HHHHHHHHHHHh
Confidence 1468999999 5 2 336666666554
No 121
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.95 E-value=3e-26 Score=224.82 Aligned_cols=287 Identities=16% Similarity=0.155 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHhCC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 99 PTVLNLSRQMAALEGT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
+..+++++.+|+++|. +.+++|+| |++|+++++.++++ |+|+++.++|+++ ... .... ..|.++.+++
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g---~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~-~~g~~~~~v~ 104 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGS---GSLGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAA-LHGLDPEVLD 104 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSC---HHHHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHH-HTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCC---cHHHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHH-HcCCceEEEe
Confidence 4578999999999997 35899999 99999999998876 8999999999986 221 1112 2578888877
Q ss_pred CC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079 175 IS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHS 246 (450)
Q Consensus 175 ~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S 246 (450)
.+ |+++|++++ ++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|
T Consensus 105 ~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 183 (353)
T 2yrr_A 105 FPPGEPVDPEAVARAL-KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTG 183 (353)
T ss_dssp CCTTSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECC
T ss_pred CCCCCCCCHHHHHHHH-HhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEec
Confidence 53 899999999 55 89999999999999999999999999999999999999983 22222233478999999
Q ss_pred CCCcc-ccCccceEEEEEcCHHHHHHHHH----------Hhh--hhhhccCCCchHH--H-HHHHHccC--CcHHHHHHH
Q 013079 247 ISKFI-SGGADIIAGAVCGPANLVNSMMD----------LHQ--GALMLLGPTMNPK--V-AFELSERI--PHLGLRMKE 308 (450)
Q Consensus 247 ~sK~~-g~~g~~igG~l~~~~~~~~~l~~----------~~~--~~~~~~g~~~~~~--~-a~~~~~~~--~~l~~~~~~ 308 (450)
+||++ +++| + |+++.++++++.+.. ... ......+ +.+.. . +..++... ..+....++
T Consensus 184 ~~K~~~~~~g--~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~ 259 (353)
T 2yrr_A 184 SQKCLSAPPG--L-APIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHH-TTPVLLHYALLEALDLVLEEGVAARERR 259 (353)
T ss_dssp TTSTTCCCSS--C-EEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CcccccCCCc--e-EEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCC-CCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99965 4455 5 999999888766530 000 0011222 22222 1 11222211 124556677
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccc
Q 013079 309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 388 (450)
Q Consensus 309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~ 388 (450)
+.++++++.+.|++.+.++..|. . ..+++++|.++.......+.+.|... | +.+..|..
T Consensus 260 ~~~~~~~l~~~L~~~g~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~ 318 (353)
T 2yrr_A 260 AREVYAWVLEELKARGFRPYPKA-----S------------PLPTVLVVRPPEGVDADRLVRALYAE---G-VAVAGGIG 318 (353)
T ss_dssp HHHHHHHHHHHHHHTTCEESCSS-----S------------BCTTEEEEECCTTCCHHHHHHHHHHT---T-EECEECCG
T ss_pred HHHHHHHHHHHHHHCCCccccCc-----c------------CCCeEEEEECCCCCCHHHHHHHHHHC---C-EEEeCCcc
Confidence 88899999999988765543321 0 14557889986222245677776642 3 56665542
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+ ..++.+|||++...+.+++.+.+.++|.++
T Consensus 319 ~-----------------------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 319 P-----------------------TRGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp G-----------------------GTTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred c-----------------------cCCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 1 014789999951333333332555555544
No 122
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=9.7e-26 Score=223.69 Aligned_cols=291 Identities=13% Similarity=0.095 Sum_probs=199.8
Q ss_pred ChhHHHHHHHHHHHhCCC---eEE-EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079 98 NPTVLNLSRQMAALEGTE---AAY-CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~---~~~-~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v 173 (450)
.+..+++++.+++++|.+ .++ +|+| |++|+++++++++++||+|+++.+.|.+.... .... ..|.++..+
T Consensus 51 ~~~~~~~~~~la~~~g~~~~~~~i~~~~g---gt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~-~~g~~~~~v 124 (376)
T 3f0h_A 51 SSTMLENEKFMLEYAKAPEGSKAVFMTCS---STGSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCE-IHEIPYVAL 124 (376)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESSC---HHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHH-HTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCC---hhHHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHH-HcCCceEEE
Confidence 366789999999999875 444 5899 99999999999999999999999877764322 1111 257777777
Q ss_pred CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeC
Q 013079 174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHS 246 (450)
Q Consensus 174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S 246 (450)
+.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.. ..+....++|+++.|
T Consensus 125 ~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s 203 (376)
T 3f0h_A 125 KLEHGKKLTKEKLYEYD-NQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITG 203 (376)
T ss_dssp ECCTTCCCCHHHHHTTT-TSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred eCCCCCCCCHHHHHHhh-ccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEec
Confidence 643 899999988 889999999999999999999999999999999999999998433 233334578999999
Q ss_pred CCCccc-cCccceEEEEEcCHHHHHHHHHHhhhh-----------h--hccCCCchH---HHHHHHHccC--C-cHHHHH
Q 013079 247 ISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA-----------L--MLLGPTMNP---KVAFELSERI--P-HLGLRM 306 (450)
Q Consensus 247 ~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~-----------~--~~~g~~~~~---~~a~~~~~~~--~-~l~~~~ 306 (450)
+||+++ ++| + |+++.++++++.+....... . .....++.. .++..++..+ . .+....
T Consensus 204 ~~K~l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 280 (376)
T 3f0h_A 204 SQKVLACPPG--I-SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEV 280 (376)
T ss_dssp TTTTTCCCSS--C-EEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CcccccCCCc--e-EEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999 566 4 88889998887775321100 0 001122222 1121222211 1 245566
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079 307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 386 (450)
Q Consensus 307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G 386 (450)
++..++++++.+.|++++..+..+. ..+.++.+..++.+ ...+.+.|... +| +.++.|
T Consensus 281 ~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~l~~~l~~~--~g-i~v~~g 338 (376)
T 3f0h_A 281 ARIASQAADFRAKIKDLPFELVSES------------------PANGVTSVHPTTAN-AYDIFLKLKDE--YG-IWICPN 338 (376)
T ss_dssp HHHHHHHHHHHHHTTTSSEEECCSS------------------BBTTEEEEEESSSC-HHHHHHHHHHH--SS-EECEEC
T ss_pred HHHHHHHHHHHHHHHHcCCccCccc------------------cCceEEEEeCCCCC-HHHHHHHHHHh--CC-EEEecC
Confidence 6678888889888887765443221 12335555544322 45666666542 23 455544
Q ss_pred cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
.. ...++.||||++ ...+++.++.+.++|.++.+
T Consensus 339 ~~-----------------------~~~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 339 GG-----------------------EMKDTIFRVGHI-GALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp CG-----------------------GGTTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred cc-----------------------ccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 11 012578999999 77777778888777776543
No 123
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=3.5e-26 Score=228.56 Aligned_cols=286 Identities=12% Similarity=0.121 Sum_probs=199.2
Q ss_pred CCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccC----------CCEEEEeCCCchhHHHHHHHhCCC
Q 013079 95 RHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~----------gd~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
.+..+..+++++.+++++|.+.++||+| |++|++++++.+..+ +|+|++..+.|++....+......
T Consensus 74 ~~~~~~~~~l~~~la~~~g~~~v~~~~~---gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 150 (392)
T 3ruy_A 74 AFHSDQLGPWYEKVAKLTNKEMVLPMNT---GAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSN 150 (392)
T ss_dssp TSEETTHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSC
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEeCc---HHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCC
Confidence 3557889999999999999999999999 999999999876543 679999999998765444221110
Q ss_pred --------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079 165 --------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV 232 (450)
Q Consensus 165 --------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~ 232 (450)
.....+..++.+|+++|++++ ++++++|++++++||||.+.| +++|.++|+++|+++|+|++|.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 229 (392)
T 3ruy_A 151 EEYKRGFGPMLPGIIVIPYGDLEALKAAI-TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLG 229 (392)
T ss_dssp TTTTTTCCSCCSSEEEECTTCHHHHHHHC-CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTT
T ss_pred hhhccccCCCCCCCeeeCcccHHHHHHHh-ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCC
Confidence 001235666777999999999 789999999999999999998 9999999999999999999996553
Q ss_pred CC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHH
Q 013079 233 LS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 304 (450)
Q Consensus 233 ~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~ 304 (450)
.. ......|+++ +||.+++ | .|+ |+++.++++++.+.....+ ....++.+.+.++..++...+. +.
T Consensus 230 ~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~ 303 (392)
T 3ruy_A 230 RTGKVFACDWDNVTPDMYI--LGKALGG-GVFPI-SCAAANRDILGVFEPGSHG-STFGGNPLACAVSIAALEVLEE-EK 303 (392)
T ss_dssp TTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCC-EEEEECHHHHTTCCTTSSC-CSSTTCHHHHHHHHHHHHHHHH-TT
T ss_pred ccccchhhhccCCCCCEEE--EchhhhC-Chhhh-EEEEECHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-hh
Confidence 21 1122467775 6799885 6 787 9999998887766443321 1122222333333333222211 33
Q ss_pred HHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 305 RMKEHCHRALIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
..+++.++++++.+.|++++.. +... .+.|+++++.++. ....+.+.|... | +.+
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~~g~~~~~~~~~--~~~~l~~~l~~~---g-i~v 359 (392)
T 3ruy_A 304 LTERSLQLGEKLVGQLKEIDNPMITEV------------------RGKGLFIGIELNE--PARPYCEQLKAA---G-LLC 359 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTEEEE------------------EEETTEEEEEESS--CSHHHHHHHHTT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEE------------------EeeeeEEEEEEcc--hHHHHHHHHHHC---C-cEE
Confidence 4556788888999999876421 1100 1346789998875 355677777642 3 444
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+.|+ ++.||||++ ...+++.++.+.++|.++
T Consensus 360 ~~~~---------------------------~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 360 KETH---------------------------ENVIRIAPP-LVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp CCBT---------------------------TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ecCC---------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 4321 478999988 777777777777777654
No 124
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.94 E-value=3.7e-26 Score=229.19 Aligned_cols=280 Identities=11% Similarity=0.111 Sum_probs=184.8
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHH--hC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeC
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL--EG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAAR 148 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l--~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~ 148 (450)
+++.+.++.. +++...+.|+. .+...++++.||++ .| .+.+++|+| +++++++++ .++.+||+|+++.
T Consensus 53 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~la~~l~~g~~~~~~v~~~~G---~~~al~~~~-~~~~~gd~Vl~~~ 125 (400)
T 3asa_A 53 EAFASSIARL-SSPTTCRGYGP--DFGLPALRQKLSEDFYRGFVDAKEIFISDG---AKVDLFRLL-SFFGPNQTVAIQD 125 (400)
T ss_dssp HHHHHHHHHH-TSSSCCCCCCC--TTCCHHHHHHHHHTTSTTSSCGGGEEEESC---HHHHHHHHH-HHHCSSCEEEEEE
T ss_pred HHHHHHHhcc-cccccccCCCC--CCCCHHHHHHHHHHHHcCCCCHHHEEEccC---hHHHHHHHH-HHcCCCCEEEECC
Confidence 5555555432 22223344542 23467899999998 46 467999999 999999865 4568899999999
Q ss_pred CCchhHHHHHHHhCCCccCee-EEEeCCCCHHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEE
Q 013079 149 TLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV 223 (450)
Q Consensus 149 ~~y~~~~~~~~~~~~~~~g~~-v~~v~~~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~li 223 (450)
|+|+++...+. ..|.+ +.+++.++.+.+...+.. +++++|++++|+||||.+.+ +++|+++|+++|+++|
T Consensus 126 p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 200 (400)
T 3asa_A 126 PSYPAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILIL 200 (400)
T ss_dssp SCCHHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 99999887764 25766 777765421111111211 57899999999999999987 6678999999999999
Q ss_pred EeCCCCCCCC------CccCC----CCeEEEeCCCCccccCccceEEEEEcCHHH-------HHHHHHHhhhhhhccCCC
Q 013079 224 VDNTFSPLVL------SPARL----GADVVVHSISKFISGGADIIAGAVCGPANL-------VNSMMDLHQGALMLLGPT 286 (450)
Q Consensus 224 vD~~~~~~~~------~~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~-------~~~l~~~~~~~~~~~g~~ 286 (450)
+|++|..+.. +...+ +.++++.|+||.+|++|+|+ ||+++++++ ++.+...........++.
T Consensus 201 ~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (400)
T 3asa_A 201 FDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYADGHFVIQDWERFLSTTFNGASI 279 (400)
T ss_dssp EECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCH
T ss_pred EEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccchhhhHHHHHHHHhccCccCCCh
Confidence 9999964432 12222 25699999999999999998 999988877 666543222111112334
Q ss_pred chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCCHHHH
Q 013079 287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-METEEKA 365 (450)
Q Consensus 287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~~~~~ 365 (450)
+.+.++..++... ++....+++.++++++.+.|++.+..+..|. .|.++++. ++.....
T Consensus 280 ~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~ 339 (400)
T 3asa_A 280 PAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE-------------------HAPYLWVKPTQANISD 339 (400)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------------SSSEEEEECCCTTCCT
T ss_pred HHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CceEEEEeccCCCCCH
Confidence 4444444444333 4555667778889999999998876654332 35689999 7632112
Q ss_pred HHHHHHhhcccccccccccccccc
Q 013079 366 NRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 366 ~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
..+...|.. ..| +.+..|+.+
T Consensus 340 ~~~~~~l~~--~~g-v~v~~g~~f 360 (400)
T 3asa_A 340 RDLFDFFLR--EYH-IAITPGIGF 360 (400)
T ss_dssp TTHHHHHHH--HHS-EECEEGGGG
T ss_pred HHHHHHHHH--hCC-EEEeChhHh
Confidence 345444432 123 566666443
No 125
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=1.6e-25 Score=222.96 Aligned_cols=310 Identities=15% Similarity=0.145 Sum_probs=216.8
Q ss_pred ChhHHHHHHHH-HHHhC-CCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 98 NPTVLNLSRQM-AALEG-TEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 98 ~~~~~~l~~~i-A~l~g-~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.|.++++++.+ |+++| .+.+++|+| ||+|+++++.++ +++||+|+++.++|.++...+. ..|.++++++
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~s---gt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~ 106 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVAN---ATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFID 106 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESC---HHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEe
Confidence 47899999999 99999 889999999 999999999998 8999999999999999988775 3688999987
Q ss_pred CC------CHHHHHHhhhcCC--ceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC---CeE
Q 013079 175 IS------DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG---ADV 242 (450)
Q Consensus 175 ~~------d~~~l~~ai~~~~--t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g---~di 242 (450)
.+ |++++++++.+++ |++|+ ++||+|.+.|+++|.++|+ +|+++|+|++|. +..+....+| .|+
T Consensus 107 ~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~ 182 (377)
T 3ju7_A 107 ISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGM 182 (377)
T ss_dssp BCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSE
T ss_pred cCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcE
Confidence 64 8999999883445 88887 6789999999999999999 999999999983 2222222232 466
Q ss_pred EEeC--CCCccccCccceEEEEEc-CHHHHHHHHHHhhhhh--------hccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079 243 VVHS--ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCH 311 (450)
Q Consensus 243 ~~~S--~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~--------~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~ 311 (450)
.+.| .+|++++ |. ||+++. ++++.+.++..+.+.. ...+..+....++..+..++.+..+.++.++
T Consensus 183 ~~~S~~~~K~l~~-g~--gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~ 259 (377)
T 3ju7_A 183 IIYSFHATKPFGI-GE--GGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTR 259 (377)
T ss_dssp EEEECBTTSSSCC-BS--CEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEEECCCCCcCCC-CC--cEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 5799996 52 577754 6778888877655221 0112335566666666667888888899999
Q ss_pred HHHHHHHHHHhCCC-ee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc--
Q 013079 312 RALIFARRMKKLGL-KV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY-- 387 (450)
Q Consensus 312 ~~~~l~~~L~~~~~-~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~-- 387 (450)
+++++.+.|++++. .+ ..|....+. .-.++.+.+++....+.+++.|...+ |.++.+.
T Consensus 260 ~~~~~~~~L~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~g----I~~~~~~~~ 321 (377)
T 3ju7_A 260 ISEWYKQLLQSNGLMKKGWQLQKTEAV--------------IQQFMPILCPEEVRNKQVIEDLKKQK----IEARLYFSP 321 (377)
T ss_dssp HHHHHHHHHHHTTTTTTTCBCCCCSCB--------------CCSSEEEECCTTSCHHHHHHHHHTTT----BCCBCTTSS
T ss_pred HHHHHHHHhcCCCCccccccCCCCCcc--------------eEEEEEEEeCChhhHHHHHHHHHHCC----CceecccCC
Confidence 99999999998763 11 112111111 11245666664323567888887643 6777765
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079 388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 445 (450)
.|.....-.+.....++..+... .+.|||+++ ...+++.++.+.++|.++...
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~~~----~~~l~lp~~-~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 322 SCHQQVLFRNYKSTDLTRTNKIA----KRIVSLPLW-EGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp CGGGSGGGTTSCBSCCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHTC----
T ss_pred ccccchhhhcCCCCCCHHHHHHH----hCEEECCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 33332111111122333333322 578999999 888899999998888776543
No 126
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.94 E-value=1.1e-25 Score=227.47 Aligned_cols=288 Identities=13% Similarity=0.113 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhCC--CeEEEecChHHHHHHH--HHHHHHhccC------------CCEEEEeCCCchhHHHHHHHhCCC
Q 013079 101 VLNLSRQMAALEGT--EAAYCTASDKAGMSAI--SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 101 ~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai--~~al~~l~~~------------gd~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
..++|+.||++++. +++++|+| +++++ .+++..+..+ +|+|+++.|+|+++...+.
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~----- 149 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDG---SSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE----- 149 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSS---CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----
T ss_pred CHHHHHHHHHHhCCChhHEEEecc---hHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----
Confidence 67899999999986 46899999 99997 6666777665 3479999999999988775
Q ss_pred ccCeeEEEeCCC----CHHHHHHhhhcCCceEEE-EecCCCCcccccCHH---HHHHHHH-hcCCEEEEeCCCC--CCCC
Q 013079 165 ACNITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFS--PLVL 233 (450)
Q Consensus 165 ~~g~~v~~v~~~----d~~~l~~ai~~~~t~lv~-i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~--~~~~ 233 (450)
..|.++..++.+ |+++|++++...++++|+ +++||||||.+.+.+ +|+++|+ ++|+++|+|++|. .+..
T Consensus 150 ~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~ 229 (422)
T 3d6k_A 150 HFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSD 229 (422)
T ss_dssp HHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred HcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCC
Confidence 257777777653 899999999324789988 689999999998866 7888888 8999999999995 3432
Q ss_pred C-----cc--------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-
Q 013079 234 S-----PA--------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI- 299 (450)
Q Consensus 234 ~-----~~--------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~- 299 (450)
. +. ..+.++++.|+||+ +++|+|+ ||+++++++++.+....... ....+.+.+.++..++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glri-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~ 306 (422)
T 3d6k_A 230 EFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGV-SFFASSKENIEWYASHANVR-GIGPNKLNQLAHAQFFGDVA 306 (422)
T ss_dssp CCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHHHHHHCSHH
T ss_pred CCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccce-EEEEeCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHhCcc
Confidence 1 11 23678999999999 6689998 99999999998887665421 1223444444444444331
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHHh----CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013079 300 ---PHLGLRMKEHCHRALIFARRMKK----LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 371 (450)
Q Consensus 300 ---~~l~~~~~~~~~~~~~l~~~L~~----~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~ 371 (450)
+++.+..+.+.++++.+.+.|++ ++. .+..|. .|.++++.++.. ....+...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~ 366 (422)
T 3d6k_A 307 GLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT-------------------GGYFISVDVVPG-TASRVVEL 366 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS-------------------BSSCEEEEESTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC-------------------cceEEEEECCCC-CHHHHHHH
Confidence 22333444566777777777765 232 333332 466899999843 23455555
Q ss_pred hhccccccccccccc-cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079 372 LQNYAQFGFMAVSLG-YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 372 l~~~~~~g~i~vs~G-~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 442 (450)
+.. .| +.+..| ..+.... ...++.||||++ . ++.++.++.|.+++.++
T Consensus 367 l~~---~g-V~v~~~g~~f~~~~------------------~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 367 AKE---AG-IALTGAGSSFPLHN------------------DPNNENIRLAPS-LPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp HHH---TT-EECCCTTTTSGGGC------------------CTTSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---CC-eEEEcCccccCCCC------------------CCCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence 554 23 555553 2221100 012478999999 6 23334444444444443
No 127
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=2.5e-25 Score=220.72 Aligned_cols=314 Identities=16% Similarity=0.230 Sum_probs=215.5
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
..+...++++.+|++++.+.+++|+| |++|+.+++.++ +++||+|+++.++|+++...+. ..|.++.+++.
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~---gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~ 107 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGT---GTDALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDS 107 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECB
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence 46789999999999999999999999 999999999999 8999999999999999987775 36888988887
Q ss_pred C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC
Q 013079 176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI 247 (450)
Q Consensus 176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~ 247 (450)
+ |++++++++ ++++++|+ |+||||.+.|+++|.++|+++|+++|+|++|+.. .++....+ .|+++.|+
T Consensus 108 ~~~~~~d~~~l~~~~-~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~ 183 (374)
T 3uwc_A 108 ENGYVIDPEKIEAAI-TDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSL 183 (374)
T ss_dssp CTTSSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred CCCCCcCHHHHHHhC-CCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeC
Confidence 5 899999999 77888887 8999999999999999999999999999998432 23333333 79999997
Q ss_pred C--CccccCccceEEEEEc-CHHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079 248 S--KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316 (450)
Q Consensus 248 s--K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 316 (450)
| |+++++|. +|+++. ++++.+.+...+..... ..+ ..+....+.......+.+....++..++++++
T Consensus 184 ~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l 261 (374)
T 3uwc_A 184 HPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLY 261 (374)
T ss_dssp SSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 99997564 488775 45677777665431110 011 12344444444445566677777778888888
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079 317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 396 (450)
Q Consensus 317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~ 396 (450)
.+.|++.+..+..|..+.... ..-..+.+..++ ...+.+.|... | +.++.|....+...+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-i~v~~~~~~~~~~~~~ 322 (374)
T 3uwc_A 262 DQSFVDLSEFIDVPVRREGVY------------HVFHIYVLRVKY---RDQLFQYLKDN---G-IEVKIHYPIAMHLQPA 322 (374)
T ss_dssp HHHTGGGTTTEECCCCCTTEE------------CCCSSEEEEETT---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGG
T ss_pred HHHhccCCCeEEeccCCCCCc------------eeeEEEEEEcCC---HHHHHHHHHHC---C-CccccCCCCccccChh
Confidence 888887652022232111000 001234444443 44566666542 3 5666664222211111
Q ss_pred ccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 013079 397 SST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVF 448 (450)
Q Consensus 397 ~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~~ 448 (450)
... ...++..... ..+.||||++ ...+++.++.+.++|.++.+..+|
T Consensus 323 ~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~edi~~~~~~l~~~l~~~~~ 373 (374)
T 3uwc_A 323 AKSLGYQQGDFPMAEKH----GEAVITLPAH-PYLTEEEINYIIKKVREFYLEKHY 373 (374)
T ss_dssp GGGGCCCTTSCHHHHHH----HHHEEEECCC-TTSCHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhcCCccCCCccHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHHHhhcC
Confidence 110 0011111111 1368999999 988899999999999887665544
No 128
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=5.4e-26 Score=223.96 Aligned_cols=285 Identities=9% Similarity=0.034 Sum_probs=198.4
Q ss_pred hhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 99 PTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
+..+++++.+++++|. +.+++|+| |++|+++++.+++++ +.+++..+.|..... .... ..|.++++++.
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g---~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~---~~~~-~~g~~~~~v~~ 114 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLAS---ATEIWERIIQNCVEK-KSFHCVNGSFSKRFY---EFAG-ELGREAYKEEA 114 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESC---HHHHHHHHHHHHCSS-EEEEEECSHHHHHHH---HHHH-HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCC---chHHHHHHHHhccCC-cEEEEcCcHHHHHHH---HHHH-HhCCCeEEEec
Confidence 5678999999999976 35899999 999999999999877 444445444441211 1112 25888888875
Q ss_pred C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc-CCEEEEeCCCCCCCCCccCC-CCeEEEeCCC
Q 013079 176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSPARL-GADVVVHSIS 248 (450)
Q Consensus 176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~~~~~~-g~di~~~S~s 248 (450)
+ |+++|+ + +++|++|++++|+||||.+.|+++|.++|+++ |+++|+|++|..... +..+ .+|+++.|+|
T Consensus 115 ~~~~~~d~~~l~--~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~~~~~~d~~~~s~~ 190 (362)
T 3ffr_A 115 AFGKGFYPADIT--V-PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KFDWTKIDSVFFSVQ 190 (362)
T ss_dssp CTTCCCCGGGCC--C-CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CCCTTSCSEEEEETT
T ss_pred CCCCCCCHHHHh--c-cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-ccChhHCcEEEEecc
Confidence 4 778877 5 78999999999999999999999999999999 999999999843221 1122 2899999999
Q ss_pred Cccc-cCccceEEEEEcCHHHHHHHHHHhhhhh-----------------hccCCCchHH---HHHHHHccC--CcHHHH
Q 013079 249 KFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL-----------------MLLGPTMNPK---VAFELSERI--PHLGLR 305 (450)
Q Consensus 249 K~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-----------------~~~g~~~~~~---~a~~~~~~~--~~l~~~ 305 (450)
|+++ ++| + |+++.++++++.+.....+.. .....+.+.. ++..++..+ ..+..+
T Consensus 191 K~~~~~~G--~-g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 267 (362)
T 3ffr_A 191 KCFGLPAG--L-GVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGI 267 (362)
T ss_dssp STTCCCSC--C-EEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccCCCCc--e-EEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHH
Confidence 9999 666 4 888888888877765443100 0001122211 121222211 125667
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079 306 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 384 (450)
Q Consensus 306 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs 384 (450)
.+++.++++++.+.|+++ +.++..|. +. ...+.+++|.+++ ....+.+.|... | +.++
T Consensus 268 ~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~~~ 326 (362)
T 3ffr_A 268 RKQTEEKAALINTYIESSKVFSFGVED----AK-----------LRSMTTIVANTTM--LPGEINKILEPF---D-MAVG 326 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEESSSC----GG-----------GBCSSEEEEEESS--CHHHHHHHHGGG---T-EEEE
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCC----hh-----------hcCCceEEEecCC--CHHHHHHHHHHC---C-eEEe
Confidence 777889999999999998 44543322 00 0245689999986 467788888753 3 5655
Q ss_pred cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.|..+ ..++.||||++ ..++++.++.+.++|+++.
T Consensus 327 ~g~~~-----------------------~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 327 AGYGS-----------------------KKETQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ECSGG-----------------------GTTTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred cCccc-----------------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 55221 12578999999 8888999999999988753
No 129
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.94 E-value=3.1e-25 Score=221.79 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=169.7
Q ss_pred CccccCCH-HHHHH-hhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--------CC--eEEEecChHHHHHHHHHH
Q 013079 66 ATFTVMEP-ETMRR-MFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASDKAGMSAISSV 133 (450)
Q Consensus 66 tt~~~~~~-~~~~~-~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~--~~~~tsg~~~gt~ai~~a 133 (450)
+++..+.+ +++.+ .+... ..+.|+. .....++++.+|++++ .+ .+++|+| |++|++++
T Consensus 42 ~~~~~~~v~~a~~~~~~~~~-----~~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g---~~~a~~~~ 111 (397)
T 3fsl_A 42 IIPQLQAVAEAEARLNAQPH-----GASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG---GSGALKVG 111 (397)
T ss_dssp CCCCCHHHHHHHHHHHHSCC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHHHHH
T ss_pred CccCcHHHHHHHHhhccCcc-----ccccCCC--CCchHHHHHHHHHHHhcCCcccccccceEEEEcCC---cHHHHHHH
Confidence 34433443 66666 55431 2234442 2334667778887763 35 7899999 99999999
Q ss_pred H--HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C---CHHHHHHhhhc--CCceEEEEecCCCCc
Q 013079 134 L--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPT 202 (450)
Q Consensus 134 l--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~---d~~~l~~ai~~--~~t~lv~i~~~~Npt 202 (450)
+ ..++++||+|+++.|+|+++...+. ..|.++..++. + |++++++++.+ ++++++++++|+|||
T Consensus 112 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~npt 186 (397)
T 3fsl_A 112 ADFLKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPT 186 (397)
T ss_dssp HHHHHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTT
T ss_pred HHHHHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 5 4567899999999999999988775 36778888876 3 89999999932 678999999999999
Q ss_pred ccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCCccccCccceEEEEEc---C
Q 013079 203 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---P 265 (450)
Q Consensus 203 G~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~ 265 (450)
|.+.+ +++|+++|+++|+++|+|++|..+.+.. ...+.++++.|+||.+|++|+|+ ||++. +
T Consensus 187 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~~~~~~~ 265 (397)
T 3fsl_A 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCED 265 (397)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEEEEECSS
T ss_pred CcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEEEEecCC
Confidence 99965 5699999999999999999996665431 12257899999999999999999 88853 4
Q ss_pred HHHHHHHHHHhhhh---hhccCCCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079 266 ANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 266 ~~~~~~l~~~~~~~---~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
++++..+....... .....+...+.++...+.. .+++....+++.++++++.+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 266 AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56665443221101 1122233444444333332 2335556667788999999999876
No 130
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=1.8e-26 Score=236.11 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCC---EEEEeCCCchhHHHHHHHhCCCccCeeE---
Q 013079 99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGG---HVVAARTLYGGTHALLTHFFPRACNITT--- 170 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd---~Vi~~~~~y~~~~~~~~~~~~~~~g~~v--- 170 (450)
...+++++.+|+++|++ .+++|+| +++++++++.+++++|+ +|+++.++|++....+...... .|.++
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g---~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~ 186 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNA---LTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEES 186 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSC---HHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHH
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECC---HHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceee
Confidence 45678999999999974 6899999 99999999999987655 5999999999976654332222 45543
Q ss_pred --EEeCCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCC
Q 013079 171 --TFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLG 239 (450)
Q Consensus 171 --~~v~~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g 239 (450)
..++.+ |+++|++++.+ +++++|++++++||||.+.|+++|.++|+++|+++|+|+++ +....+....+
T Consensus 187 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~ 266 (465)
T 3e9k_A 187 MRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWG 266 (465)
T ss_dssp EEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred eEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcC
Confidence 333332 79999999931 68999999999999999999999999999999999999998 33334444568
Q ss_pred CeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhhhh---------------------hccCCCchHHHHHH---
Q 013079 240 ADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL---------------------MLLGPTMNPKVAFE--- 294 (450)
Q Consensus 240 ~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~---------------------~~~g~~~~~~~a~~--- 294 (450)
+|+++.|+||+++ +++ .+ |+++.++++.+.+.....++. ....++++...+..
T Consensus 267 ~D~~~~s~~K~l~~gp~-~~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~a 344 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAG-GI-AGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHA 344 (465)
T ss_dssp CCEEEECSSSTTCCCTT-CC-CEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHH
T ss_pred CCEEEECcccccccCCC-ce-EEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHH
Confidence 9999999999994 444 35 777777776554421111100 00011222222211
Q ss_pred HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-----------CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 295 LSERIP--HLGLRMKEHCHRALIFARRMKKL-----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 295 ~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-----------~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
++..+. .+....++..++++++.+.|+++ +.++..|.. + .+.|++++|.++.
T Consensus 345 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~------------~~~g~~~~~~~~~ 409 (465)
T 3e9k_A 345 SLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH---V------------EERGCQLTITFSV 409 (465)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS---G------------GGBCSCEEEEECC
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC---H------------hhcccEEEEEecC
Confidence 221111 24555566788888899999873 335544431 1 1357899999872
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013079 362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~ 440 (450)
....+.+.|... | +.+..+ .++.||||+ + ..++++.++.+.++|.
T Consensus 410 --~~~~l~~~L~~~---G-i~v~~~---------------------------~~~~iRis~~~-~~~t~edi~~~~~~l~ 455 (465)
T 3e9k_A 410 --PNKDVFQELEKR---G-VVCDKR---------------------------NPNGIRVAPVP-LYNSFHDVYKFTNLLT 455 (465)
T ss_dssp --TTCCHHHHHHTT---T-EECEEE---------------------------TTTEEEEBCCT-TTCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHC---C-EEEecC---------------------------CCCEEEEeCcc-cCCCHHHHHHHHHHHH
Confidence 234566666542 3 333211 147899999 7 7777888888888887
Q ss_pred Hhhhc
Q 013079 441 RMQDS 445 (450)
Q Consensus 441 ~~~~~ 445 (450)
++.+.
T Consensus 456 ~~l~~ 460 (465)
T 3e9k_A 456 SILDS 460 (465)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 76544
No 131
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.94 E-value=2.4e-25 Score=224.86 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=168.8
Q ss_pred CccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--------CC--eEEEecChHHHHHHHHHHH
Q 013079 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASDKAGMSAISSVL 134 (450)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~--~~~~tsg~~~gt~ai~~al 134 (450)
.+++.+.+ +++.+.+... ..+.|+. .....++++.+++++. .+ .+++|+| |++|+++++
T Consensus 65 ~~~~~~~v~~a~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G---~t~al~~~~ 134 (420)
T 4f4e_A 65 KIPLLRAVRDAEKARVEAG-----LPRGYLP--IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALG---GTGALKIGA 134 (420)
T ss_dssp CCCCCHHHHHHHHHHHHTC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHH
T ss_pred CccCcHHHHHHHHHHhccC-----CCCCCCC--CCCcHHHHHHHHHHhcCCCccccccCceEEEECCc---cHHHHHHHH
Confidence 44444443 6666665531 2234542 2234567777777652 34 7899999 999999994
Q ss_pred --HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C---CHHHHHHhhhc---CCceEEEEecCCCCc
Q 013079 135 --MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ---GRTKVLYFESISNPT 202 (450)
Q Consensus 135 --~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~---d~~~l~~ai~~---~~t~lv~i~~~~Npt 202 (450)
.+++.+||+|+++.|.|+++...+. ..|.++..++. + |++++++++ + ++++++++++|+|||
T Consensus 135 ~~~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~NPt 208 (420)
T 4f4e_A 135 DFLRTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAAL-NGYEPGTIVVLHACCHNPT 208 (420)
T ss_dssp HHHHHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHH-TTCCTTCEEEEECSSCTTT
T ss_pred HHHHHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHH-HhCCCCCEEEEeCCCCCCC
Confidence 4568999999999999999988775 35777777776 2 899999999 5 678999999999999
Q ss_pred ccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCCccccCccceEEEEEc---C
Q 013079 203 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---P 265 (450)
Q Consensus 203 G~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~ 265 (450)
|.+.+ +++|+++|+++|+++|+|++|..+.++. ...+.++++.|+||.+|++|+|+ ||++. +
T Consensus 209 G~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~~~~~ 287 (420)
T 4f4e_A 209 GVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GALSIITDS 287 (420)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEEEEEcCC
Confidence 99965 6689999999999999999997665431 12357899999999999999999 88742 4
Q ss_pred HHHHHHHHHH-hhh--hhhccCCCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079 266 ANLVNSMMDL-HQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 266 ~~~~~~l~~~-~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
+++++.+... ... ......+...+.++...+.. .+++....+++.++++.+.+.|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 288 KDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5655543221 110 11122233344444333322 1234556667888999999999886
No 132
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.94 E-value=1e-25 Score=228.19 Aligned_cols=296 Identities=14% Similarity=0.122 Sum_probs=194.0
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEe
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA 147 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~ 147 (450)
+++.+.+.. +++..+.+.|+. .....++++.||+++ + .+.+++|+| +++++.+ +..++++||+|+++
T Consensus 76 ~a~~~~~~~-~~~~~~~~~y~~--~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G---~~~al~~-l~~l~~~gd~Vl~~ 148 (432)
T 3ei9_A 76 SAMAKKAHE-LSTIEGYSGYGA--EQGAKPLRAAIAKTFYGGLGIGDDDVFVSDG---AKCDISR-LQVMFGSNVTIAVQ 148 (432)
T ss_dssp HHHHHHHHH-TTSTTTCCCCCC--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESC---HHHHHHH-HHHHHCTTCCEEEE
T ss_pred HHHHHHHhc-ccccCCccCCCC--CCCCHHHHHHHHHHHHccCCCCcceEEECCC---hHHHHHH-HHHHcCCCCEEEEe
Confidence 555555543 333333344542 334578899999985 3 457999999 9999987 57778999999999
Q ss_pred CCCchhHHHHHHHhCCCccC---------eeEEEeCCCCHHHHHHhhh-cCCceEEEEecCCCCcccccC---HHHHHHH
Q 013079 148 RTLYGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFESISNPTLAVAN---IPELSRL 214 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~~~g---------~~v~~v~~~d~~~l~~ai~-~~~t~lv~i~~~~NptG~v~~---l~~I~~l 214 (450)
.|.|+++...+..... .| .++.+++.++.+.+...+. .+++++|++++|+||||.+.+ +++|+++
T Consensus 149 ~p~y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l 226 (432)
T 3ei9_A 149 DPSYPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEF 226 (432)
T ss_dssp ESCCTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999887753322 12 2455655542211111121 357899999999999999976 6677788
Q ss_pred HHhcCCEEEEeCCCCCCCCC-----ccCC----CCeEEEeCCCCccccCccceEEEEEcCHHH--------HHHHHHHhh
Q 013079 215 AHDKGVTVVVDNTFSPLVLS-----PARL----GADVVVHSISKFISGGADIIAGAVCGPANL--------VNSMMDLHQ 277 (450)
Q Consensus 215 a~~~gi~livD~~~~~~~~~-----~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~--------~~~l~~~~~ 277 (450)
|+++|+++|+|++|+.+... ...+ +.++++.|+||.+|++|+|+ ||+++++++ .+.+.....
T Consensus 227 a~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (432)
T 3ei9_A 227 AKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIPKKLLYSDGFPVAKDFNRIIC 305 (432)
T ss_dssp HHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECCTTCBCTTSCBHHHHHHHHHH
T ss_pred HHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEChHHhhcchHHHHHHHHHHhc
Confidence 99999999999999544321 1111 46899999999999999998 999988877 666655443
Q ss_pred hhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079 278 GALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 355 (450)
Q Consensus 278 ~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 355 (450)
.. ....+.+.+.++..++. ..+++.+..+++.++++++.+.|+++++.+..|. .|.++
T Consensus 306 ~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~ 365 (432)
T 3ei9_A 306 TC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK-------------------NAPYV 365 (432)
T ss_dssp HS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS-------------------SSSEE
T ss_pred cc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC-------------------cceEE
Confidence 11 11122233333333322 1234556667788999999999998876654332 35689
Q ss_pred EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079 356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 425 (450)
Q Consensus 356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 425 (450)
++.+++.+ ...+...+.. ..| +.+..|+.+.. ..++.||||++ .
T Consensus 366 ~~~~~~~~-~~~~~~~ll~--~~g-v~v~~g~~f~~---------------------~~~~~iRis~~-~ 409 (432)
T 3ei9_A 366 WVHFPNQS-SWDVFAEILE--KTH-VVTTPGSGFGP---------------------GGEGFVRVSAF-G 409 (432)
T ss_dssp EEECTTSC-HHHHHHHHHH--HHC-EECEEGGGGCG---------------------GGTTEEEEECC-S
T ss_pred EEECCCCC-HHHHHHHHHH--HCC-EEEeCchHhCC---------------------CCCCEEEEEec-C
Confidence 99998432 3444444432 123 56666644311 01578999998 5
No 133
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.94 E-value=5.6e-26 Score=227.92 Aligned_cols=303 Identities=15% Similarity=0.142 Sum_probs=203.9
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEE
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVV 145 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi 145 (450)
+++.+.+...+ +.+..+..+..++++++++++++.+.+++|+| |++|++++++.+.. +| |+|+
T Consensus 62 ~a~~~~~~~~~------~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~g---g~~a~~~al~~~~~~~~~~~~~g~~~vi 132 (406)
T 4adb_A 62 EALNEQASKFW------HTGNGYTNEPVLRLAKKLIDATFADRVFFCNS---GAEANEAALKLARKFAHDRYGSHKSGIV 132 (406)
T ss_dssp HHHHHHHTTCS------CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESS---HHHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHhcc------cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 56666554432 22234567889999999999999999999999 99999999998764 66 8999
Q ss_pred EeCCCchhHHHHHHHhCCC--------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc-----CHHHHH
Q 013079 146 AARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-----NIPELS 212 (450)
Q Consensus 146 ~~~~~y~~~~~~~~~~~~~--------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~-----~l~~I~ 212 (450)
+.+|.|+++.......... ..+..+..++.+|+++|++++ ++++++|+++ |+||+|.+. ++++|.
T Consensus 133 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~ 210 (406)
T 4adb_A 133 AFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI-DDSTCAVIVE-PIQGEGGVVPASNAFLQGLR 210 (406)
T ss_dssp EETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC-STTEEEEEEC-SEETTTTSEECCHHHHHHHH
T ss_pred EECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh-cCCeEEEEEe-CCcCCCCCccCCHHHHHHHH
Confidence 9999999875443222110 012466777778999999999 7899999999 899999764 699999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC
Q 013079 213 RLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 285 (450)
Q Consensus 213 ~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~ 285 (450)
++|+++|+++|+|++|+++.... .....|++ |+||.++ +|.|+ |+++.++++++.+.....+ ....++
T Consensus 211 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~ 285 (406)
T 4adb_A 211 ELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPV-GALLATEECARVMTVGTHG-TTYGGN 285 (406)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHHTCCTTSSC-CSSTTC
T ss_pred HHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCe-EEEEEcHHHHhhhccCCcC-CCCCCC
Confidence 99999999999999996553321 12346777 4799999 78998 9999999888776543321 112233
Q ss_pred CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--
Q 013079 286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-- 363 (450)
Q Consensus 286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-- 363 (450)
.+.+.++...+..++. ....+++.++++++.+.|++.+... +... +..+.|.+++|.++...
T Consensus 286 ~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~-------------~~~~~g~~~~~~~~~~~~~ 349 (406)
T 4adb_A 286 PLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINHRY--GLFS-------------EVRGLGLLIGCVLNADYAG 349 (406)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--CCEE-------------EEEEETTEEEEEECTTTTT
T ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCce-------------EEEEEEEEEEEEEeCCcHH
Confidence 3333333333333222 4556667888888888887653211 0000 01145779999998521
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
....+.+.|... | +.+..+ .++.|||+++ ...+++.++.+.++|.
T Consensus 350 ~~~~~~~~l~~~---g-i~v~~~---------------------------~~~~iRi~~~-~~~~~e~i~~~~~~l~ 394 (406)
T 4adb_A 350 QAKQISQEAAKA---G-VMVLIA---------------------------GGNVVRFAPA-LNVSEEEVTTGLDRFA 394 (406)
T ss_dssp CHHHHHHHHHHT---T-EECEES---------------------------STTEEEECCC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---C-cEEeec---------------------------CCCeEEEECC-CCCCHHHHHHHHHHHH
Confidence 356677777642 3 333322 1478999877 5444444444444443
No 134
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.2e-25 Score=224.11 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=201.7
Q ss_pred CCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh
Q 013079 83 ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF 161 (450)
Q Consensus 83 ~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~ 161 (450)
.++||+..|. +....+.++++++.+++++|++. ++||+| ||+|+++++.. +.+||+|++..++|++.... ..
T Consensus 20 ~~~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~s---gt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~ 92 (379)
T 3ke3_A 20 VYTDRALNHM-SKAFQEVMNDLLSNLKTVYNAEAAVIIPGS---GTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QI 92 (379)
T ss_dssp SCCTTSCCTT-SHHHHHHHHHHHHHHHHHHTCSEEEEEESC---HHHHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HH
T ss_pred hccCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEcCC---hhHHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HH
Confidence 4678766554 44445788999999999999865 678899 99999998854 57899999999999875421 11
Q ss_pred CCCccC--eeEEEeC--------------CCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEE
Q 013079 162 FPRACN--ITTTFVD--------------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTV 222 (450)
Q Consensus 162 ~~~~~g--~~v~~v~--------------~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~l 222 (450)
... .| .++.+++ ..|++++++++.++++++|++.+++|++|.+.| +++|.++|+++|+++
T Consensus 93 ~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l 171 (379)
T 3ke3_A 93 LEK-GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLL 171 (379)
T ss_dssp HHH-HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred HHH-hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence 111 23 3555553 248999999984358999999999999999999 999999999999999
Q ss_pred EEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-hh-----------------hhcc
Q 013079 223 VVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-----------------LMLL 283 (450)
Q Consensus 223 ivD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-----------------~~~~ 283 (450)
|+|++++ ...++...+++|+++.|+||+++++.. + |+++.++++++.+..... .. ....
T Consensus 172 i~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g-~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (379)
T 3ke3_A 172 VIDCIASGCVWLDMKELGIDVLISAPQKGWSSTPC-A-GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAY 249 (379)
T ss_dssp EEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC-E-EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCC
T ss_pred EEEecccCCccccccccCCCEEEecchhhcCCCCc-e-EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCC
Confidence 9999985 233344445899999999998875532 4 899999888877653110 00 0001
Q ss_pred CCCchHHHHH---HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079 284 GPTMNPKVAF---ELSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 358 (450)
Q Consensus 284 g~~~~~~~a~---~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 358 (450)
..+++...++ .++..+. .+....+++.++++++.+.|+++++.+..+.-. ..+.+..+.
T Consensus 250 ~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~----------------~~~~i~~~~ 313 (379)
T 3ke3_A 250 HATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGF----------------EAPGVVVSY 313 (379)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTC----------------BCSSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccc----------------cCceEEEEc
Confidence 1122222111 2222111 245566677888999999999987755433210 122355566
Q ss_pred eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHH
Q 013079 359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQ 434 (450)
Q Consensus 359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~ 434 (450)
+++.+ . .+...|.. .| +.++.|..|+... ....+.||||+. . ++++.+++.
T Consensus 314 ~~~~~-~-~~~~~L~~---~G-i~v~~g~~~~~~~------------------~~~~~~lRis~~-~~~t~~di~~~~~~ 368 (379)
T 3ke3_A 314 TERDD-M-HKGSAFAE---AG-LQIAAGVPLKVGE------------------PDNFKTFRLGLF-GLDKLTDIDGTVER 368 (379)
T ss_dssp CSCHH-H-HSSHHHHH---TT-CCCEECCCCSSCC------------------CTTCCEEEEECC-SHHHHTCHHHHHHH
T ss_pred cCCcc-h-HHHHHHHH---CC-eEEeCCccccccc------------------cCcCCEEEEeCC-cCCCHHHHHHHHHH
Confidence 65543 2 12344443 23 5677775443210 012578999998 6 455555555
Q ss_pred HHHHHHHh
Q 013079 435 FEKALSRM 442 (450)
Q Consensus 435 l~~al~~~ 442 (450)
|.++++++
T Consensus 369 l~~~l~~~ 376 (379)
T 3ke3_A 369 FEKALDEV 376 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 135
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.94 E-value=9.3e-25 Score=216.41 Aligned_cols=329 Identities=14% Similarity=0.152 Sum_probs=215.3
Q ss_pred CccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh---ccCC
Q 013079 66 ATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL---CSSG 141 (450)
Q Consensus 66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l---~~~g 141 (450)
.+++.+. .+++.+.+...+. + ..+..+++++.||+++|.+.+++|+| |++|+++++.++ +++|
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~--------~--~~~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~~~~~~~~~~~g 74 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQL--------T--QGKRSLLFEEALCEFLGVKHALVFNS---ATSALLTLYRNFSEFSADR 74 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCC--------S--SSHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHSSCCCTTS
T ss_pred CCCCCHHHHHHHHHHHHcCcc--------c--CChHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHhcccCCCC
Confidence 3444444 3666666643221 1 24678999999999999999999999 999999999999 8899
Q ss_pred CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH
Q 013079 142 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 216 (450)
Q Consensus 142 d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~ 216 (450)
|+|+++.++|+++...+. ..|.++.+++.+ |+++|++++ ++++++|+++++ ||.+.|+++|.++|+
T Consensus 75 d~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~---tG~~~~l~~i~~l~~ 145 (375)
T 2fnu_A 75 NEIITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY---AGKSVEVESVQKLCK 145 (375)
T ss_dssp CEEEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred CEEEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence 999999999999988775 268888888764 788999988 778998887665 999999999999999
Q ss_pred hcCCEEEEeCCCCCCCC-CccCCC--CeEEEeCCC--CccccCccceEEEEEcC-HHHHHHHHHHhhhhh----------
Q 013079 217 DKGVTVVVDNTFSPLVL-SPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGAL---------- 280 (450)
Q Consensus 217 ~~gi~livD~~~~~~~~-~~~~~g--~di~~~S~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~---------- 280 (450)
++|+++|+|++|+.... ....++ .|+++.|+| |++++ | +||+++.+ +++++.+.....+..
T Consensus 146 ~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2fnu_A 146 KHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV 222 (375)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred HcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence 99999999999843221 111121 267766766 99986 6 54555534 778887766543211
Q ss_pred hccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079 281 MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 357 (450)
Q Consensus 281 ~~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 357 (450)
...+ ..+.+..+.......+.+....++..++++++.+.|++++ ..+..+... ..+.+.++++
T Consensus 223 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--------------~~~~~~~~~~ 288 (375)
T 2fnu_A 223 KSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK--------------DKSSNHLYPI 288 (375)
T ss_dssp SSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS--------------SCCCCSCEEE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC--------------CCcceEEEEE
Confidence 0011 1234444444433456677777888899999999998874 343322100 0022346677
Q ss_pred EeCCH-H-HHHHHHHHhhccccccccccccccccc-cccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079 358 DMETE-E-KANRLMNYLQNYAQFGFMAVSLGYYET-LMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 431 (450)
Q Consensus 358 ~l~~~-~-~~~~~~~~l~~~~~~g~i~vs~G~~~s-~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 431 (450)
.++.. . ....+.+.|... | +.++.+ |. ....+... ....++.... ...+.||||++ ...+++.
T Consensus 289 ~~~~~~~~~~~~l~~~L~~~---g-i~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~ 357 (375)
T 2fnu_A 289 LMHQKFFTCKKLILESLHKR---G-ILAQVH--YKPIYQYQLYQQLFNTAPLKSAED----FYHAEISLPCH-ANLNLES 357 (375)
T ss_dssp EECGGGGGGHHHHHHHHHHT---T-EECBCC--CCCGGGSHHHHHHHCCCCCHHHHH----HHHHEEEECCC-TTCCHHH
T ss_pred EeCccccchHHHHHHHHHHC---C-CCcccc--ccccccchhhhcCCCccCChHHHH----HHhCEEEecCC-CCCCHHH
Confidence 77632 1 356777777642 3 454422 11 00000000 0000110111 11368999999 8777888
Q ss_pred HHHHHHHHHHhhh
Q 013079 432 WSQFEKALSRMQD 444 (450)
Q Consensus 432 i~~l~~al~~~~~ 444 (450)
++.+.++|.++.+
T Consensus 358 i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 358 VQNIAHSVLKTFE 370 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 136
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=7.5e-25 Score=217.72 Aligned_cols=287 Identities=11% Similarity=0.128 Sum_probs=191.1
Q ss_pred hHHHHHHHHHHHhCC------CeEEEecChHHHHHHHHHHHHHhc---cCCCEEEEeC-CCchhHH-HHHHHhCCCccCe
Q 013079 100 TVLNLSRQMAALEGT------EAAYCTASDKAGMSAISSVLMQLC---SSGGHVVAAR-TLYGGTH-ALLTHFFPRACNI 168 (450)
Q Consensus 100 ~~~~l~~~iA~l~g~------~~~~~tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~ 168 (450)
...++++.++++++. +.+++|+| |++|+++++.++. ++||+|++.. +.|+... ..+. ..|.
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g---~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~-----~~g~ 110 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGS---GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-----SYGA 110 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESC---TTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-----HTTC
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCc---hHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-----HcCC
Confidence 456788888888875 56899999 9999999999987 8999998874 4555543 3332 2688
Q ss_pred eEEEeCC-C-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccC
Q 013079 169 TTTFVDI-S-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPAR 237 (450)
Q Consensus 169 ~v~~v~~-~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~ 237 (450)
++++++. + |+++|++++ ++ ++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+ ....+...
T Consensus 111 ~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~ 189 (385)
T 2bkw_A 111 QVDVVRPLKIGESVPLELITEKL-SQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDE 189 (385)
T ss_dssp EEEEECCSSTTSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTT
T ss_pred ceEEEecCCCCCCCCHHHHHHHH-hcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccc
Confidence 8888887 3 899999999 54 899999999999999999999999999999 99999999983 23334445
Q ss_pred CCCeEEEeCCCCccc-cCccceEEEEEcCHHHHH-HHH------------------H----HhhhhhhccCCC-chHH-H
Q 013079 238 LGADVVVHSISKFIS-GGADIIAGAVCGPANLVN-SMM------------------D----LHQGALMLLGPT-MNPK-V 291 (450)
Q Consensus 238 ~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~-~l~------------------~----~~~~~~~~~g~~-~~~~-~ 291 (450)
+++|+++.|+||+++ ++| + |+++.++++++ .+. . ...+.....+.. .... +
T Consensus 190 ~~~d~~~~s~~K~~~~~~G--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 266 (385)
T 2bkw_A 190 WGVDFALTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINS 266 (385)
T ss_dssp TTCSEEEEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHH
T ss_pred cCceEEEecCccccccCCc--c-eEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHH
Confidence 578999999999665 566 5 88888887766 431 1 111000001111 1121 1
Q ss_pred HHHHHccCC--cHHHHHHHHHHHHHHHHHHH-HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079 292 AFELSERIP--HLGLRMKEHCHRALIFARRM-KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 368 (450)
Q Consensus 292 a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L-~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~ 368 (450)
+..++..+. .+....+++.++++++.+.| ++++.++..|. +. .+..+++++|.+++ ...+
T Consensus 267 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~-------------~~~~~~~~~~~~~~---~~~~ 329 (385)
T 2bkw_A 267 LDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRY-PS-------------NMSAHGLTAVYVAD---PPDV 329 (385)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCS-SS-------------TTBCSSCEEEECSC---HHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccC-cc-------------cccCCceEEEecCC---HHHH
Confidence 222222211 24556677788999999999 87765554321 00 00146689999976 4567
Q ss_pred HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCC---CCHHHHHHHHHHHHHHh
Q 013079 369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 369 ~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~---~~~~~~i~~l~~al~~~ 442 (450)
.+.|... | +.++.|..+ ...++.+||| +| . ..+++.++.+.++|.++
T Consensus 330 ~~~l~~~---g-i~v~~g~~~----------------------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 330 IAFLKSH---G-VVIAGGIHK----------------------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp HHHHHHT---T-EECBCCCCT----------------------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHC---C-eEEeCCCCc----------------------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHH
Confidence 7766542 3 555555321 0124789999 77 3 23444455555555443
No 137
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.94 E-value=2.5e-26 Score=227.06 Aligned_cols=310 Identities=12% Similarity=0.066 Sum_probs=199.3
Q ss_pred CccccCC-HHHHHHhhcCCCCCCCCCcc---ccCCCChhHHHHHHHHHHHhCCC---eE-EEecChHHHHHHHHHHHHHh
Q 013079 66 ATFTVME-PETMRRMFAGELGPDRDFFI---YSRHFNPTVLNLSRQMAALEGTE---AA-YCTASDKAGMSAISSVLMQL 137 (450)
Q Consensus 66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~---y~r~~~~~~~~l~~~iA~l~g~~---~~-~~tsg~~~gt~ai~~al~~l 137 (450)
++++.+. .+++.+.+....+++++.+. ++.......+++++.+++++|.+ .+ ++|+| |++|+++++.++
T Consensus 12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g---~t~a~~~~~~~l 88 (362)
T 2c0r_A 12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG---ASTQFAMIPMNF 88 (362)
T ss_dssp SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH---HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC---chHHHHHHHHhc
Confidence 3333333 36666666543333333111 22222345789999999999975 54 67799 999999999999
Q ss_pred ccCCCEEEEeCCCchhHH--HHHHHhCCCccCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccc-
Q 013079 138 CSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV- 205 (450)
Q Consensus 138 ~~~gd~Vi~~~~~y~~~~--~~~~~~~~~~~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v- 205 (450)
+++||+|++..+.|.+.. ..+. ..| ++++++.+ |++++ .+ +++|++|++++++||||.+
T Consensus 89 ~~~gd~vl~~~~~~~~~~~~~~~~-----~~g-~~~~v~~~~~~~~~~~~~~~~~--~i-~~~t~~v~~~~~~n~tG~~~ 159 (362)
T 2c0r_A 89 LKEGQTANYVMTGSWASKALKEAK-----LIG-DTHVAASSEASNYMTLPKLQEI--QL-QDNAAYLHLTSNETIEGAQF 159 (362)
T ss_dssp CCTTCEEEEEECSHHHHHHHHHHH-----HHS-CEEEEEECGGGTTCSCCCGGGC--CC-CTTEEEEEEESEETTTTEEC
T ss_pred CCCCCeEEEEecCcHhHHHHHHHH-----HhC-CeEEEecccccccccCCCHHHc--cc-CCCcCEEEEeCCcCccceec
Confidence 999999998877655432 2222 257 77766532 33333 25 7789999999999999995
Q ss_pred cCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh------
Q 013079 206 ANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------ 277 (450)
Q Consensus 206 ~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------ 277 (450)
.|+++| +|+++|+|++|.... .+.. ..|+++.|+||++|++| + ||++.++++++.+.....
T Consensus 160 ~~l~~i------~~~~vivD~a~~~~~~~~~~~--~~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~~~~~~~~~~ 228 (362)
T 2c0r_A 160 KAFPDT------GSVPLIGDMSSDILSRPFDLN--QFGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPKHLPTMLRYD 228 (362)
T ss_dssp SSCCCC------TTSCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCTTSCGGGCHH
T ss_pred cccccc------CCCEEEEEChhhccCCccchh--HCcEEEEeccccccCcC--c-EEEEEcHHHHhhccccCchHHhHH
Confidence 788876 899999999994322 2222 24899999999999887 5 999888877654432100
Q ss_pred ---hhhhccCCC--chHHHHHHHHccC-C--cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhcc
Q 013079 278 ---GALMLLGPT--MNPKVAFELSERI-P--HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANK 347 (450)
Q Consensus 278 ---~~~~~~g~~--~~~~~a~~~~~~~-~--~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~ 347 (450)
......++. ..+.++..++... + .+..+.+++.++++++.+.|++++ . .+..+. ..
T Consensus 229 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----~~--------- 294 (362)
T 2c0r_A 229 TYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV-----DS--------- 294 (362)
T ss_dssp HHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG-----GG---------
T ss_pred HHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh-----HH---------
Confidence 000111222 2222222333222 1 356677778899999999999887 4 443211 00
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079 348 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 427 (450)
Q Consensus 348 ~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 427 (450)
..+++++|.++.......|.+.|... | +.+..|..+ .+.||||++ ..+
T Consensus 295 --~~~~~~~~~~~~~~~~~~~~~~L~~~---g-i~~~~g~~~-------------------------~~~iRis~~-~~~ 342 (362)
T 2c0r_A 295 --RSDMNITFRLASEELEKEFVKASEQE---G-FVGLKGHRS-------------------------VGGLRASIY-NAV 342 (362)
T ss_dssp --BCSSEEEEECSCHHHHHHHHHHHHHT---T-EESCBCCTT-------------------------TCSEEEECC-TTS
T ss_pred --cCCcEEEEEcCCcchHHHHHHHHHHC---C-CeeccCCCC-------------------------CCEEEEECC-CCC
Confidence 13457899988644567788888652 3 444333110 256999999 877
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013079 428 LDQRWSQFEKALSRMQD 444 (450)
Q Consensus 428 ~~~~i~~l~~al~~~~~ 444 (450)
+++.++.+.++|+++.+
T Consensus 343 ~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 343 PYESCEALVQFMEHFKR 359 (362)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 78888998888887643
No 138
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.94 E-value=6.4e-25 Score=219.65 Aligned_cols=301 Identities=13% Similarity=0.148 Sum_probs=201.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc-------cCCCEEEE
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC-------SSGGHVVA 146 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~-------~~gd~Vi~ 146 (450)
+++.+.++.. .|.++++.++..++++++++++++.+.++||+| |++|+..+++.+. .++++|++
T Consensus 59 ~a~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~g---g~ea~~~al~~~~~~~~~~g~~~~~vi~ 129 (395)
T 3nx3_A 59 AKIKAQVDKL------LHTSNLYYNENIAAAAKNLAKASALERVFFTNS---GTESIEGAMKTARKYAFNKGVKGGQFIA 129 (395)
T ss_dssp HHHHHHHTTC------SCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHHhc------cccccccCCHHHHHHHHHHHHhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 5555555432 244555678899999999999999999999999 9999999998765 34789999
Q ss_pred eCCCchhHHHHHHH---------hCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHH
Q 013079 147 ARTLYGGTHALLTH---------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSR 213 (450)
Q Consensus 147 ~~~~y~~~~~~~~~---------~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~ 213 (450)
.++.|++....... .... .+..+.+++.+|+++|++++ ++++++|++++++|++|.+.+ +++|.+
T Consensus 130 ~~~~yhg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~ 207 (395)
T 3nx3_A 130 FKHSFHGRTLGALSLTANEKYQKPFKP-LISGVKFAKYNDISSVEKLV-NEKTCAIILESVQGEGGINPANKDFYKALRK 207 (395)
T ss_dssp ETTCCCCSSHHHHTTCCCHHHHGGGCS-CCSCEEEECTTCHHHHHTTC-CTTEEEEEEESEECTTSCEECCHHHHHHHHH
T ss_pred EcCCcCCCCHHHHhhcCCcccccccCC-CCCCcEEeCCCCHHHHHHhc-cCCeEEEEEeCccCCCCcccCCHHHHHHHHH
Confidence 99999876433211 1111 34567788888999999999 788999999999999999977 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhhhhccCC
Q 013079 214 LAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGP 285 (450)
Q Consensus 214 la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~ 285 (450)
+|++||+++|+||+|.++... ......|++ |+||.+++ |.++ |++++++++ ++.+..... .....++
T Consensus 208 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (395)
T 3nx3_A 208 LCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GAFVINQKVASNSLEAGDH-GSTYGGN 282 (395)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EEEEECHHHHHHHSCTTCC-SSCBSCC
T ss_pred HHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC-CCce-EEEEEchhhhhhhcCCccc-CCCCCCC
Confidence 999999999999999655321 112235665 47899986 8898 999999888 766643322 1112333
Q ss_pred CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
.+.+.++..++..++. +...++..++.+++.+.|+ +++.....+ +.|.+++|.++.
T Consensus 283 ~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~ 342 (395)
T 3nx3_A 283 PLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINEFDFCKKRK-------------------GLGFMQGLSLDK 342 (395)
T ss_dssp HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEECT
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------eEEEEEEEEeCC
Confidence 3333333333321110 1223333444444444444 333211111 357799999985
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
......+.+.|... | +.++.+ .++.||||++ ...+++.++.+.++|++
T Consensus 343 ~~~~~~~~~~l~~~---G-i~v~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~ 390 (395)
T 3nx3_A 343 SVKVAKVIQKCQEN---A-LLLISC---------------------------GENDLRFLPP-LILQKEHIDEMSEKLRK 390 (395)
T ss_dssp TSCHHHHHHHHHHT---T-EECEEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHC---C-CEEecC---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 43356777777642 3 333322 1478999988 76667777777666665
Q ss_pred h
Q 013079 442 M 442 (450)
Q Consensus 442 ~ 442 (450)
+
T Consensus 391 ~ 391 (395)
T 3nx3_A 391 A 391 (395)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=6.9e-25 Score=223.45 Aligned_cols=252 Identities=11% Similarity=0.065 Sum_probs=170.6
Q ss_pred ccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh-CC-------CeEEE--ecChHHHHHHH
Q 013079 62 IEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE-GT-------EAAYC--TASDKAGMSAI 130 (450)
Q Consensus 62 i~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~-g~-------~~~~~--tsg~~~gt~ai 130 (450)
-+.+++++.+.+ +++.++.+.. +...+.|.. .....++++.+|+++ |. +.+++ |+| |++|+
T Consensus 61 d~~~~~~v~~av~~a~~~~~~~~---~~~~~~Y~~--~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~g---gt~al 132 (448)
T 3meb_A 61 DESGKPWILPAVKEAEAIISSDL---SKYNKEYPP--VAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLS---GTGSL 132 (448)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHCT---TTTCCSCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHH
T ss_pred CCCCCEechHHHHHHHHHHhhcc---cCCCCCCCC--CcchHHHHHHHHHHhcCCCccccCcCcEEEEECCc---HHHHH
Confidence 345555555554 4444343111 122344542 234577899999987 64 46888 999 99999
Q ss_pred HH--HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---C-----CHHHHHHhhhc--CCceEEEEecC
Q 013079 131 SS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAIVQ--GRTKVLYFESI 198 (450)
Q Consensus 131 ~~--al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---~-----d~~~l~~ai~~--~~t~lv~i~~~ 198 (450)
++ .+..++.+||+|++++|+|+++...+..++.. .|.++..++. + |++++++++.. ++++++++++|
T Consensus 133 ~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p 211 (448)
T 3meb_A 133 HIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNK-LKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACA 211 (448)
T ss_dssp HHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCT-TTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSS
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHh-CCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCC
Confidence 88 45566789999999999999998877522222 5667766654 2 88999999832 46889999999
Q ss_pred CCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------C-CCCeEEEeCCCCccccCccceEEEE-
Q 013079 199 SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------R-LGADVVVHSISKFISGGADIIAGAV- 262 (450)
Q Consensus 199 ~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~-~g~di~~~S~sK~~g~~g~~igG~l- 262 (450)
|||||.+.+ +++|+++|+++|+++|+|++|..+..... . ...++++.|+||.+|++|+|+ ||+
T Consensus 212 ~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~ 290 (448)
T 3meb_A 212 HNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-GCLH 290 (448)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-EEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccc-eeee
Confidence 999999987 55699999999999999999966654321 1 135688999999999999999 887
Q ss_pred -Ec--------C-H----HHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHH
Q 013079 263 -CG--------P-A----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMK 321 (450)
Q Consensus 263 -~~--------~-~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~ 321 (450)
+. + + .+++.+...... .....+...+.++..++... +.+....+++.++++++.+.|+
T Consensus 291 ~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~ 369 (448)
T 3meb_A 291 VVHAGVEGSVEKNKALSAAMVSGMTLQIRK-TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLA 369 (448)
T ss_dssp EECCCCSSSHHHHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccccCCHHHHHHHHHHHHHHHhc-ccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 3 4 455555443321 11122233333443333321 2245555677888999999998
Q ss_pred hCC
Q 013079 322 KLG 324 (450)
Q Consensus 322 ~~~ 324 (450)
+++
T Consensus 370 ~~~ 372 (448)
T 3meb_A 370 KRK 372 (448)
T ss_dssp HTT
T ss_pred hhC
Confidence 864
No 140
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=7.4e-25 Score=220.38 Aligned_cols=222 Identities=10% Similarity=0.049 Sum_probs=162.3
Q ss_pred CccccCCCChhHHHHHHHHHHHh-C-------CCeEEE--ecChHHHHHHHHHHHH--HhccCC-----CEEEEeCCCch
Q 013079 90 FFIYSRHFNPTVLNLSRQMAALE-G-------TEAAYC--TASDKAGMSAISSVLM--QLCSSG-----GHVVAARTLYG 152 (450)
Q Consensus 90 ~~~y~r~~~~~~~~l~~~iA~l~-g-------~~~~~~--tsg~~~gt~ai~~al~--~l~~~g-----d~Vi~~~~~y~ 152 (450)
.+.|+. .+...++++.||+++ + .+.+++ |+| |++|++++++ .++.+| |+|+++.|+|+
T Consensus 67 ~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g---g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~ 141 (412)
T 1ajs_A 67 NHEYLP--ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG---GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWE 141 (412)
T ss_dssp CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCT
T ss_pred ccCCCC--CCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC---cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcH
Confidence 344542 344578999999988 4 367899 999 9999999964 446789 99999999999
Q ss_pred hHHHHHHHhCCCccCee-EEEeCC---C----CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcC
Q 013079 153 GTHALLTHFFPRACNIT-TTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKG 219 (450)
Q Consensus 153 ~~~~~~~~~~~~~~g~~-v~~v~~---~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~g 219 (450)
++...+. ..|.+ +..++. + |+++|++++.. .++++|++++|+||||.+.+ +++|+++|+++|
T Consensus 142 ~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 216 (412)
T 1ajs_A 142 NHNGVFT-----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 216 (412)
T ss_dssp HHHHHHH-----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 9887775 25777 777765 2 89999998833 36888989999999999965 668999999999
Q ss_pred CEEEEeCCCCCCCCCc-------cC-----CCCeEEEeCCCCccccCccceEEEEEc---CHHHHH----HHHHHhhhhh
Q 013079 220 VTVVVDNTFSPLVLSP-------AR-----LGADVVVHSISKFISGGADIIAGAVCG---PANLVN----SMMDLHQGAL 280 (450)
Q Consensus 220 i~livD~~~~~~~~~~-------~~-----~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~----~l~~~~~~~~ 280 (450)
+++|+|++|..+.+.. .. .+.++++.|+||.+|++|+|+ ||+++ ++++++ .+..... .
T Consensus 217 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~- 293 (412)
T 1ajs_A 217 LFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPDSILRVLSQMQKIVR-V- 293 (412)
T ss_dssp CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-
T ss_pred CEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcce-EEEEEecCCHHHHHHHHHHHHHHHh-c-
Confidence 9999999986664421 11 134699999999999999998 88887 777443 3433222 1
Q ss_pred hcc-CCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 281 MLL-GPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 281 ~~~-g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
... ++.+.+.++..++... +++....+++.++++++.+.|++++
T Consensus 294 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 294 TWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 122 2444454444444332 1345556677888999999998875
No 141
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=1.2e-24 Score=217.36 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=215.2
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
.+...++++.+|++++.+.+++|+| |++|+++++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 38 ~~~~~~l~~~la~~~~~~~~~~~~~---gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~ 109 (393)
T 1mdo_A 38 GPKNQELEAAFCRLTGNQYAVAVSS---ATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVD 109 (393)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBC
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecC---hHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEecc
Confidence 5788999999999999999999999 999999999999 8999999999999999987775 368888888753
Q ss_pred ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC-CeEEEeCCC
Q 013079 177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG-ADVVVHSIS 248 (450)
Q Consensus 177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g-~di~~~S~s 248 (450)
|+++|++++ ++++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+ +.......++ .|+++.|+|
T Consensus 110 ~~~~~~d~~~l~~~l-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~ 185 (393)
T 1mdo_A 110 RDTLMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFH 185 (393)
T ss_dssp TTTCCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECC
T ss_pred CCcCCCCHHHHHHhc-CCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCC
Confidence 799999999 7789998864 589999999999999999999999999995 3333333345 899999999
Q ss_pred --CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------------------ccC--CCchHHHHHHHHccCCcHHHH
Q 013079 249 --KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLR 305 (450)
Q Consensus 249 --K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~ 305 (450)
|++++ .+ +|+++.+ +++++.+...+..... ..| ..+....+......++.+.+.
T Consensus 186 k~K~l~~--~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~ 262 (393)
T 1mdo_A 186 AIKNITC--AE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDAL 262 (393)
T ss_dssp TTSSSCS--SS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHH
T ss_pred CCCcccc--cc-ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHH
Confidence 88864 35 4898875 7888887665431100 011 113344443333344556666
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhccccccccc
Q 013079 306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMA 382 (450)
Q Consensus 306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~ 382 (450)
.++..++++++.+.|++++.++..+..... .+.+.+++|.++. ......+.+.|... | +.
T Consensus 263 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~---g-i~ 325 (393)
T 1mdo_A 263 NARRAAIAAQYHQAMADLPFQPLSLPSWEH-------------IHAWHLFIIRVDEARCGITRDALMASLKTK---G-IG 325 (393)
T ss_dssp HHHHHHHHHHHHHHHHTSSCEECCCCSSCE-------------ECCCSCEEEECCHHHHSSCHHHHHHHHHHT---T-BC
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCC-------------CceeEEEEEEecccccccCHHHHHHHHHhC---C-CC
Confidence 677777888999999887754332110000 0234578999872 11256677777653 3 67
Q ss_pred ccccccccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079 383 VSLGYYETLMSCSGSST---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 383 vs~G~~~s~~~~~~~~~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 445 (450)
++.|..|.... +.... ...++..... ....||||++ ...+++.++.+.++|.++.+.
T Consensus 326 v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 326 TGLHFRAAHTQ-KYYRERFPTLTLPDTEWN----SERICSLPLF-PDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CBCCCCCGGGS-HHHHHHSTTCCCHHHHHH----HTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred cccccCccccC-hhhhccCCccCChhHHHH----HhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 77765542110 00000 0011111111 1468999999 888888899999988876543
No 142
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.93 E-value=4e-25 Score=219.32 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=194.3
Q ss_pred CChhHHHHHHHHHHHhCC-CeEEEecChHHHHHHHHHHHHH---hc---cCC-CEEEEeCCCchhHHHHHHHhCCCc---
Q 013079 97 FNPTVLNLSRQMAALEGT-EAAYCTASDKAGMSAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA--- 165 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~-~~~~~tsg~~~gt~ai~~al~~---l~---~~g-d~Vi~~~~~y~~~~~~~~~~~~~~--- 165 (450)
..+...++++.||+++|. +.+++|+| |++|+++++.. +. ++| |+|++++++|+++...+.......
T Consensus 68 ~~~~~~~l~~~la~~~g~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~ 144 (375)
T 2eh6_A 68 ENPWQEELAHKLVKHFWTEGKVFFANS---GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFH 144 (375)
T ss_dssp CCHHHHHHHHHHHHTSSSCEEEEEESS---HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred CCHHHHHHHHHHHhhcCCCCeEEEeCc---hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence 356788999999999998 88999999 99999999875 34 678 999999999988755443221110
Q ss_pred cCe-----eEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079 166 CNI-----TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP- 235 (450)
Q Consensus 166 ~g~-----~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~- 235 (450)
.|. .+..++..|+++|++++ ++++++|++++++||||.+.+ +++|.++|+++|+++|+|++|+++....
T Consensus 145 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 223 (375)
T 2eh6_A 145 KGFEPLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE 223 (375)
T ss_dssp TTTCSCCSSEEEECTTCHHHHHTTC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred CCCCCCCCCceeCCCchHHHHHHHh-cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Confidence 122 26666777999999999 778999999999999999988 9999999999999999999996554321
Q ss_pred ----cCCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079 236 ----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 309 (450)
Q Consensus 236 ----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 309 (450)
..++ .|++ |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++.. .++.+....++.
T Consensus 224 ~~~~~~~~~~~d~~--s~SK~~~-~g~~~-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~l~~~~~~~~~~ 295 (375)
T 2eh6_A 224 FYAYQHFNLKPDVI--ALAKGLG-GGVPI-GAILAREEVAQSFTPGSH-GSTFGGNPLACRAGTV---VVDEVEKLLPHV 295 (375)
T ss_dssp SSGGGGGTCCCSEE--EECGGGG-TTSCC-EEEEEEHHHHTTCCTTSC-CCSSTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred chhhhhcCCCCCEE--EEccccc-CCCCe-EEEEEcHHHHhhhcCCCC-CCCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 2335 7877 4669999 48888 888888777766543211 1111122222222222 223333455667
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079 310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
.++++++.+.|++++.... + +.|.++++.++.. ...+.+.|.. .| +.+..+
T Consensus 296 ~~~~~~l~~~L~~~~~~~~-~-------------------~~g~~~~~~~~~~--~~~~~~~l~~---~g-i~~~~~--- 346 (375)
T 2eh6_A 296 REVGNYFKEKLKELGKGKV-K-------------------GRGLMLGLELERE--CKDYVLKALE---KG-LLINCT--- 346 (375)
T ss_dssp HHHHHHHHHHHHHTTSSEE-E-------------------EETTEEEEECSSC--CHHHHHHHHH---TT-EECEEE---
T ss_pred HHHHHHHHHHHHHHhcCCc-e-------------------EEEEEEEEEEcCc--HHHHHHHHHH---CC-CEEecC---
Confidence 8888999999988754211 1 2467899998741 3456666543 22 332221
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.++.||||++ ...+++.++.+.++|.++
T Consensus 347 ------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 347 ------------------------AGKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp ------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 1478999998 767777777777777653
No 143
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=2.9e-24 Score=214.60 Aligned_cols=309 Identities=14% Similarity=0.198 Sum_probs=212.1
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
..+...++++.+|++++.+.+++|+| |++|+.+++.++ +++||+|+++.++|+++...+. ..|.++.+++.
T Consensus 54 ~~~~~~~l~~~la~~~~~~~~i~~~~---gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~ 125 (391)
T 3dr4_A 54 VGRFIVEFEKAFADYCGVKHAIACNN---GTTALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDN 125 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEec
Confidence 46789999999999999999999999 999999999999 8999999999999999988775 36888888876
Q ss_pred C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeC
Q 013079 176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHS 246 (450)
Q Consensus 176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S 246 (450)
+ |+++|++++ ++++++|+ ++||||.+.|+++|.++|+++|+++|+|++|+ +........+ .|+++.|
T Consensus 126 ~~~~~~~d~~~l~~~~-~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S 201 (391)
T 3dr4_A 126 DPRTFNLDAAKLEALI-TPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFS 201 (391)
T ss_dssp CTTTCSBCGGGSGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred CccccCcCHHHHHHhc-CCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEE
Confidence 5 789999988 78898888 57899999999999999999999999999984 2322222121 3677777
Q ss_pred C--CCccccCccceEEEEEcC-HHHHHHHHHHhhhhhh--------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHH
Q 013079 247 I--SKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM--------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRA 313 (450)
Q Consensus 247 ~--sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~--------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 313 (450)
+ +|++++ | + ||+++.+ +.+.+.+...+.+... ..| ..+....+.+.......+....++.++++
T Consensus 202 ~s~~K~l~~-g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~ 278 (391)
T 3dr4_A 202 FFGNAIITT-G-E-GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVV 278 (391)
T ss_dssp CBTTSSSCC-B-S-CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCcCCc-C-C-eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 499875 3 3 4777654 5677777655432111 001 22334444443334455666677778888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccccc
Q 013079 314 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 314 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~ 391 (450)
+++.+.|++.+..+..+..+. .....+.++++.+++ ......+.+.|... | |.++.|.....
T Consensus 279 ~~l~~~L~~~g~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~---G-I~v~~~~~p~~ 342 (391)
T 3dr4_A 279 GWYEQKLARLGNRVTKPHVAL------------TGRHVFWMYTVRLGEGLSTTRDQVIKDLDAL---G-IESRPVFHPMH 342 (391)
T ss_dssp HHHHHHHGGGTTSEECCCCCT------------TSCCCCSSEEEEECSSCSSCHHHHHHHHHHT---T-CCCEECCCCGG
T ss_pred HHHHHHhhcCCccccCcCCCC------------CCcceeEEEEEEECCccchhHHHHHHHHHHC---C-CceeecCCccc
Confidence 899999988765544330000 001233467888874 22355677777653 3 66676642211
Q ss_pred ccccccc--cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 392 MSCSGSS--TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 392 ~~~~~~~--~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
. .+... ....++...... ...|||+++ ...++++++.+.++|.++
T Consensus 343 ~-~~~~~~~~~~~~~~~~~~~----~~~lrl~~~-~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 343 I-MPPYAHLATDDLKIAEACG----VDGLNLPTH-AGLTEADIDRVIAALDQV 389 (391)
T ss_dssp G-SGGGGGGCCTTCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHTT
T ss_pred c-ChhhhhcCcCCChHHHHHH----hCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 1 11111 112222222222 467999999 988999999999988765
No 144
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.93 E-value=6.7e-24 Score=212.41 Aligned_cols=327 Identities=12% Similarity=0.062 Sum_probs=221.0
Q ss_pred cCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEe
Q 013079 70 VME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAA 147 (450)
Q Consensus 70 ~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~ 147 (450)
.++ .+++.+.+...|. ....+...++++.||+++|.+.+++|+| |++|+++++.++ +++||+|+++
T Consensus 11 ~~~v~~a~~~~~~~~~~---------~~~g~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~~~~l~~~~gd~Vl~~ 78 (394)
T 1o69_A 11 GGNELKYIEEVFKSNYI---------APLGEFVNRFEQSVKDYSKSENALALNS---ATAALHLALRVAGVKQDDIVLAS 78 (394)
T ss_dssp -CCHHHHHHHHHHHTTT---------SCTTHHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHcCCc---------cCCChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCCCEEEEC
Confidence 344 3666666643222 1123678999999999999999999999 999999999998 8999999999
Q ss_pred CCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC---CceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079 148 RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKG 219 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~---~t~lv~i~~~~NptG~v~~l~~I~~la~~~g 219 (450)
.++|+++...+. ..|.++.+++.+ |+++|++++ ++ ++++|++++ |+|...++++|.++|+++|
T Consensus 79 ~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~ 149 (394)
T 1o69_A 79 SFTFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAI-KECEKKPKALILTH---LYGNAAKMDEIVEICKEND 149 (394)
T ss_dssp SSSCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHH-HHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTT
T ss_pred CCccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHH-hcccCCceEEEEEC---CCCChhhHHHHHHHHHHcC
Confidence 999999988775 268888888754 899999998 54 799999875 8999999999999999999
Q ss_pred CEEEEeCCCC-CCCCCcc---C-CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCC-------
Q 013079 220 VTVVVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPT------- 286 (450)
Q Consensus 220 i~livD~~~~-~~~~~~~---~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~------- 286 (450)
+++|+|++|. ++.+... . .++|+.+.|.+|.+++. ++ |+++.+ +++++.+...+.... ...+.
T Consensus 150 ~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~--~~-G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~g 225 (394)
T 1o69_A 150 IVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS--GG-GMLIGKNKEKIEKARFYSTQAR-ENCLHYEHLDYG 225 (394)
T ss_dssp CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS--SC-EEEEESCHHHHHHHHHHTBTCC-CSSSSCCCSSCC
T ss_pred CEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCC--Cc-eEEEECCHHHHHHHHHHHHhcc-ccCccccccccC
Confidence 9999999995 4432221 1 24678888889988754 35 999884 788888876544210 00000
Q ss_pred ----chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079 287 ----MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362 (450)
Q Consensus 287 ----~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 362 (450)
.....+..++..++.+.++.++..++++++.+.|++. .++. +. ..... ..-.+++|.++..
T Consensus 226 ~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~-~~-~~~~~------------~~~~~~~i~~~~~ 290 (394)
T 1o69_A 226 YNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFL-DE-LENSR------------SNRWLSTALINFD 290 (394)
T ss_dssp CBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECC-CC-CTTEE------------CCCSSEEEEESCC
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-CC-CCCCc------------ceeEEEEEEecch
Confidence 2233343333335667777888899999999999876 3322 21 10000 0112577888721
Q ss_pred ---------------------HHHHHHHHHhhccccccccccccccccccccccccccC--CCCCHHHHHhcCCCCCeEE
Q 013079 363 ---------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVR 419 (450)
Q Consensus 363 ---------------------~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~--~~~~~~~~~~~g~~~~~iR 419 (450)
.....+.+.|... | |.++.|..|... .|..... ..++...... ...+|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~~~~~~~-~p~~~~~~~~~~~~~~~~~----~~~~~ 361 (394)
T 1o69_A 291 KNELNACQKDINISQKNITLHPKISKLIEDLKNK---Q-IETRPLWKAMHT-QEVFKGAKAYLNGNSELFF----QKGIC 361 (394)
T ss_dssp GGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHT---T-CCCBCCCCCGGG-CGGGTTCEEEECSHHHHHH----HHEEE
T ss_pred hhccccccccccccccccccccCHHHHHHHHHHc---C-CcccccCCcccc-chhhhccCCCCChHHHHHh----cCeEE
Confidence 1356777877653 3 677777654321 1111100 0111111111 24567
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013079 420 MSVGYLGTLDQRWSQFEKALSRMQDSG 446 (450)
Q Consensus 420 iS~g~~~~~~~~i~~l~~al~~~~~~~ 446 (450)
+..+ ...++++++.+.++|+++.+..
T Consensus 362 ~~~~-~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 362 LPSG-TAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp ECCC-TTCCHHHHHHHHHHHHHHHC--
T ss_pred ccCC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 7678 8888899999999998875543
No 145
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=8.8e-24 Score=207.73 Aligned_cols=277 Identities=12% Similarity=0.101 Sum_probs=195.0
Q ss_pred CChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH--HHHhCCCcc--CeeEE
Q 013079 97 FNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTT 171 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~--g~~v~ 171 (450)
..+..+++++.+++++|.+. +++|+| |++|+.+++..++++||+|+++.+.|.++... +. .. |.++.
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~---gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~-----~~~~g~~~~ 112 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPT---GTAANALCLSAMTPPWGNIYCHPASHINNDECGAPE-----FFSNGAKLM 112 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESC---HHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH-----HHTTSCEEE
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCC---ccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH-----HHhCCcEEE
Confidence 46788999999999999654 799999 99999999999889999999999999876644 43 13 77888
Q ss_pred EeCCC----CHHHHHH-hhhcC-------CceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCC-----
Q 013079 172 FVDIS----DHEMVNS-AIVQG-------RTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPL----- 231 (450)
Q Consensus 172 ~v~~~----d~~~l~~-ai~~~-------~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~----- 231 (450)
.++.+ |+++|++ ++ ++ ++++|++++|+| ||.+ .++++|.++|+++|+++|+|++|..+
T Consensus 113 ~v~~~~~~~d~~~l~~~~i-~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 190 (356)
T 1v72_A 113 TVDGPAAKLDIVRLRERTR-EKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL 190 (356)
T ss_dssp ECCCGGGCCCHHHHHHHTT-SSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH
T ss_pred EecCCCCeEcHHHHHHHhh-hcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccC
Confidence 88765 8999999 88 54 689999999987 9995 45889999999999999999998321
Q ss_pred CCCccC----CCCeEEEeCCCCccccCccceE-EEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC--cHHH
Q 013079 232 VLSPAR----LGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP--HLGL 304 (450)
Q Consensus 232 ~~~~~~----~g~di~~~S~sK~~g~~g~~ig-G~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~--~l~~ 304 (450)
...+.. .+.|+++.|+||+ +++ +| |+++.++++++.+...+.... .........+......++ ....
T Consensus 191 ~~~~~~~~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 264 (356)
T 1v72_A 191 GCSPAEMTWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAG--HLSSKMRFLSAQIDAYLTDDLWLR 264 (356)
T ss_dssp TCCTTTTTGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTT--CCCSSTHHHHHHHHHHTSTTHHHH
T ss_pred CCCHHHhhhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccC--chhhhHHHHHHHHHHHHHhhhHHH
Confidence 122322 2678999999999 432 43 688888888887765443111 111112222222222222 2334
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 305 RMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
..+++.++++++.+.|+++ +.++..|. .++++++.++. .+.+.|... | +.+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~-----~~~~~l~~~---g-i~v 316 (356)
T 1v72_A 265 NARKANAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDS-----AMIDALLKA---G-FGF 316 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECH-----HHHHHHHHT---T-CBC
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEccCC-------------------CccEEEEEcCH-----HHHHHHHhc---C-eEE
Confidence 5566778889999999876 44554442 35588888862 455555432 2 444
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
..|. .+ ++.+||+++ ...+++.++.+.++|.++.
T Consensus 317 ~~g~-----------------------~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 317 YHDR-----------------------WG--PNVVRFVTS-FATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp BCSS-----------------------SS--TTEEEEECC-TTCCHHHHHHHHHHHHHTC
T ss_pred eccc-----------------------cC--CCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 4331 01 378999999 8777777888878777653
No 146
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=5.3e-25 Score=217.02 Aligned_cols=293 Identities=14% Similarity=0.075 Sum_probs=192.8
Q ss_pred CccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC--EEEEeCCCchhHHHHHHHhCCCccC
Q 013079 90 FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACN 167 (450)
Q Consensus 90 ~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g 167 (450)
...|+ .++...+++++||+++|.+..++++| |++|+.+++++++.+|| .|+++.+.|........ ... ..|
T Consensus 40 ~~~y~--~~~~~~~l~~~la~~~~~~~~i~~~~---G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~-~~~-~~g 112 (357)
T 3lws_A 40 SDQYG--TGAIIEPFEQKFADVLGMDDAVFFPS---GTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG-LKE-LHP 112 (357)
T ss_dssp CEETT--EETTHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HHH-HSS
T ss_pred ccccc--CChHHHHHHHHHHHHhCCCcEEEecC---cHHHHHHHHHHHhhcCCCcEEEecccceeeeeccch-hhh-ccC
Confidence 34455 25788999999999999988888999 99999999999888888 66666666554432100 000 247
Q ss_pred eeEEEeCCC----CHHHHHHhhhcCCceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCCC-----CCCCC
Q 013079 168 ITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS-----PLVLS 234 (450)
Q Consensus 168 ~~v~~v~~~----d~~~l~~ai~~~~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~-----~~~~~ 234 (450)
.++..++.+ |+++|+++. ++++|++++|+||| |.+.+ +++|+++|+++|+++|+|++|. .....
T Consensus 113 ~~~~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 189 (357)
T 3lws_A 113 IETILVGAADRLMTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT 189 (357)
T ss_dssp CEEEECSCTTSCCCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred cEEEEecCCCCCcCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC
Confidence 788887753 889998864 39999999999998 88875 8899999999999999999873 11122
Q ss_pred ccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079 235 PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 312 (450)
Q Consensus 235 ~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 312 (450)
... .+.|+++.|+||++++++ ||++++++++++.+...+.... .........++.. ...++...++++++.++
T Consensus 190 ~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 264 (357)
T 3lws_A 190 AAEIAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYG-GDLISLYPYIVSA-DYYYELRKDRMGQYYEQ 264 (357)
T ss_dssp HHHHHTTSSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTT-CCCSCCHHHHHHH-HHHHHHHTTCHHHHHHH
T ss_pred hHHHHhcCCEEEEeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhc-CCcccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 211 247888999999996554 4899999999988876554110 0111112222211 11222223344556777
Q ss_pred HHHHHHHHHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccccc
Q 013079 313 ALIFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYY 388 (450)
Q Consensus 313 ~~~l~~~L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~ 388 (450)
++++.+.|++++ .++. .|. .++++++.++.. .....+.+.|... | +.+..|..
T Consensus 265 ~~~l~~~L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-i~v~~g~~ 321 (357)
T 3lws_A 265 AKQLAEQFNALPGVHTTPEVP-------------------VSNMFHLHFDGQAADISPKLEQVQEET---G-LGFVGYLV 321 (357)
T ss_dssp HHHHHHHHHTSTTEEEESSSC-------------------SSSEEEEEEESCHHHHHHHHHHHHHHH---C-EESCSCCE
T ss_pred HHHHHHHHHhCCCCeeccCCC-------------------cceEEEEEecCChHHHHHHHHHHHHhc---C-eEEecccc
Confidence 889999999874 3552 232 456899998742 2355666666643 3 45554421
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
. +-....+|+++| ........+.+.++++++.
T Consensus 322 ~----------------------~~~~~~~r~~i~-~~~~~~~~~~l~~al~~l~ 353 (357)
T 3lws_A 322 D----------------------KDGYCSTEISVG-DAYGELDQQTRDAGFARLR 353 (357)
T ss_dssp E----------------------CSSEEEEEEEBC-TTGGGSCHHHHHHHHHHHH
T ss_pred c----------------------CCCceEEEEEec-chhhhcCHHHHHHHHHHHH
Confidence 0 001357999999 7544444455555555554
No 147
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.93 E-value=6e-25 Score=219.97 Aligned_cols=286 Identities=14% Similarity=0.081 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhC-------C-CeEEEecChHHHHHHHHHHHHHhccCCC----EEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 102 LNLSRQMAALEG-------T-EAAYCTASDKAGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 102 ~~l~~~iA~l~g-------~-~~~~~tsg~~~gt~ai~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
.++|+.||++++ . +++++|+| +++++++++.+++++|| +|++++|+|+++...+. ..|.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G---~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~ 142 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTG---STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSG 142 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEH---HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCC---hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCe
Confidence 789999999886 3 47999999 99999999999999999 99999999999988875 25666
Q ss_pred EEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEeCC
Q 013079 170 TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSI 247 (450)
Q Consensus 170 v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~S~ 247 (450)
+..++.+ .+.++ .+++++|++++||||||.+.+ +|++.++.+++++|+|++|..-...+. ..+.+++++|+
T Consensus 143 ~~~~~~d-~~~l~----~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~ 215 (391)
T 3bwn_A 143 MYKWEGD-AWGFD----KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTF 215 (391)
T ss_dssp TEEEEEE-STTCC----CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEH
T ss_pred EEEecCC-HHHcC----CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEec
Confidence 6555542 22222 357999999999999999986 454422233499999999842111122 23678999999
Q ss_pred CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-----------CCcHHHHHHHHHHHHHH
Q 013079 248 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALI 315 (450)
Q Consensus 248 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~ 315 (450)
||.+|++|+|+ ||++. ++++++.+...+... ....+.+.+.++..++.. .+++....+.+.++++.
T Consensus 216 SK~~g~~GlRi-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (391)
T 3bwn_A 216 SKITGHAGSRI-GWALVKDKEVAKKMVEYIIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK 293 (391)
T ss_dssp HHHHSCGGGCE-EEEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCccce-EEEEecCHHHHHHHHHHhccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99986 888988887765521 123344445444444432 34466666778899999
Q ss_pred HHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccc
Q 013079 316 FARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 394 (450)
Q Consensus 316 l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~ 394 (450)
+.+.|++++. .+..|. ..... +... .....|.++++.+++.+ .+...+.. .| +.+..|+.+
T Consensus 294 l~~~L~~~~~~~~~~p~-~~~~~--f~~~---~~~~~g~~~~~~~~~~~---~~~~~l~~---~g-V~v~pg~~f----- 355 (391)
T 3bwn_A 294 LREVVKESDAFTLPKYP-EAFCN--YFGK---SLESYPAFAWLGTKEET---DLVSELRR---HK-VMSRAGERC----- 355 (391)
T ss_dssp HHHHHHTCSSEECCCCC-CEEET--TTTE---EECCCCSEEEEEESSSC---CHHHHHHH---TT-EECEEGGGG-----
T ss_pred HHHHHHhCCCcccccCC-ccccc--cccc---cCCCcceEEEecCCcHH---HHHHHHHH---CC-EEEccCCCC-----
Confidence 9999998742 332221 00000 0000 00023558899997422 22333332 22 566666543
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 395 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 395 ~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
|..++.||||++ . .++.++.+.++|.++
T Consensus 356 -----------------g~~~~~iRis~~-~--~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 356 -----------------GSDKKHVRVSML-S--REDVFNVFLERLANM 383 (391)
T ss_dssp -----------------TCCTTEEEEESC-S--CHHHHHHHHHHHHSC
T ss_pred -----------------CCCCCEEEEEec-C--CHHHHHHHHHHHHHH
Confidence 112578999999 5 455556666666554
No 148
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.93 E-value=1.1e-24 Score=217.75 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=156.0
Q ss_pred ChhHHHHHHHHHHHh---C-----CCeEEE--ecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079 98 NPTVLNLSRQMAALE---G-----TEAAYC--TASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRA 165 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~---g-----~~~~~~--tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~ 165 (450)
.+...++++.||+++ + .+.+++ |+| |++|++++++.+ +.+||+|+++.|+|+++...+. .
T Consensus 68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g---~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~ 139 (396)
T 2q7w_A 68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG---GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----S 139 (396)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----H
T ss_pred CCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc---chhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----H
Confidence 344678899999887 2 456777 999 999999998765 3689999999999999988775 3
Q ss_pred cCeeEEEeCC---C----CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079 166 CNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL 233 (450)
Q Consensus 166 ~g~~v~~v~~---~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~ 233 (450)
.|.++..++. + |++++++++.+ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+
T Consensus 140 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 219 (396)
T 2q7w_A 140 AGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFAR 219 (396)
T ss_dssp TTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSS
T ss_pred cCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence 5778877776 3 89999999832 24788889999999999975 56899999999999999999966544
Q ss_pred C------ccC-C----CCeEEEeCCCCccccCccceEEEEEc---CHH----HHHHHHHHhhhhhhccC-CCchHHHHHH
Q 013079 234 S------PAR-L----GADVVVHSISKFISGGADIIAGAVCG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFE 294 (450)
Q Consensus 234 ~------~~~-~----g~di~~~S~sK~~g~~g~~igG~l~~---~~~----~~~~l~~~~~~~~~~~g-~~~~~~~a~~ 294 (450)
. +.. + +.++++.|+||.+|++|+|+ ||++. +++ +++.+...... ...+ +.+.+.++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~ 296 (396)
T 2q7w_A 220 GLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIRA--NYSNPPAHGASVVAT 296 (396)
T ss_dssp CHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHT--TTSSCCHHHHHHHHH
T ss_pred CccchhHHHHHHHhcCCcEEEEEecccccccccccc-ceEEEEcCCHHHHHHHHHHHHHHHhh--ccCCCCcHHHHHHHH
Confidence 2 111 1 46789999999999999998 88875 554 44444332221 1222 3333333333
Q ss_pred HHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 295 LSERI-------PHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 295 ~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
++... +++....+++.++++.+.+.|++++
T Consensus 297 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 297 ILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33322 2333444567888899999998875
No 149
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.93 E-value=5.9e-24 Score=214.39 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=209.2
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
....+++++.+++++|.+..++++| |++|+++++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 41 ~~l~~~l~~~la~~~g~~~~i~~~~---gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 112 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVPYCVPTTS---GSTALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVE 112 (418)
T ss_dssp CCHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecC
Confidence 4558999999999999998999999 999999999998 8999999999999999988775 368888888754
Q ss_pred ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCC
Q 013079 177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSI 247 (450)
Q Consensus 177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~ 247 (450)
|+++|++++ ++++++|++ +||||.+.++++|.++|+++|+++|+|++|..+. ++...++ .|+++.|+
T Consensus 113 ~~~~~~d~~~l~~~i-~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~ 188 (418)
T 2c81_A 113 ADTYCIDPQLIKSAI-TDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSC 188 (418)
T ss_dssp TTTCSBCHHHHGGGC-CTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred CCCCCcCHHHHHHhh-CCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEec
Confidence 899999999 778999885 4689999999999999999999999999994443 2221221 35666666
Q ss_pred --CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh-----------cc---------C--CCchHHHHHHHHccCCcH
Q 013079 248 --SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM-----------LL---------G--PTMNPKVAFELSERIPHL 302 (450)
Q Consensus 248 --sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~-----------~~---------g--~~~~~~~a~~~~~~~~~l 302 (450)
||++++ | +. |+++. ++++++.+...+..... .. | ..+....++.....++.+
T Consensus 189 s~~K~~~~-g-~~-g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~ 265 (418)
T 2c81_A 189 QQGKVLTA-G-EG-GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL 265 (418)
T ss_dssp CTTSSSCS-S-SC-EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH
T ss_pred cCCcccCC-C-Ce-EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH
Confidence 999997 6 64 99888 47888777665432110 00 0 002233333333345567
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhcccc
Q 013079 303 GLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQ 377 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~~~~~l~~~~~ 377 (450)
....++..++++++.+.|++++ ..+..+. .... ...-.++.|.++. ......+.+.|...
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 330 (418)
T 2c81_A 266 DDKNAIREKNAMFLNDALSKIDGIKVMKRP--PQVS-----------RQTYYGYVFRFDPVKFGGLNADQFCEILREK-- 330 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEECCCC--TTEE-----------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCC--CCCc-----------ccccEEEEEEEccccccccCHHHHHHHHHHc--
Confidence 7777777888889999998774 3443221 0000 0011366677762 11255677777652
Q ss_pred ccccc---cccccccccccccccccC------------------CCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHH
Q 013079 378 FGFMA---VSLGYYETLMSCSGSSTS------------------SELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQF 435 (450)
Q Consensus 378 ~g~i~---vs~G~~~s~~~~~~~~~~------------------~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l 435 (450)
+| +. ++.|..+.- ..+..... ..++..+.. ..+.||||++ ... ++++++.+
T Consensus 331 ~g-I~~~~v~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~gt~edi~~~ 403 (418)
T 2c81_A 331 LN-MGTFYLHPPYLPVH-KNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA----SGQSIVIHHA-ILLAEPSHLSLL 403 (418)
T ss_dssp HT-CCTTTEECCCCCGG-GCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHH
T ss_pred CC-CCcccccccccccc-cCchhcccccccccccccccccccccCCChHHHHH----HhCEEEecCC-ccCCCHHHHHHH
Confidence 23 56 666653211 00100000 011111111 1368999998 877 88888888
Q ss_pred HHHHHHhhhc
Q 013079 436 EKALSRMQDS 445 (450)
Q Consensus 436 ~~al~~~~~~ 445 (450)
.++|.++.+.
T Consensus 404 ~~~l~~~~~~ 413 (418)
T 2c81_A 404 VDAVAELARK 413 (418)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888876543
No 150
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=3.8e-24 Score=214.53 Aligned_cols=307 Identities=19% Similarity=0.171 Sum_probs=202.9
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 176 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~ 176 (450)
.+...++++.+|+++|.+.+++++| |++|+.+++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 62 ~~~~~~l~~~la~~~~~~~~v~~~~---Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 133 (399)
T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNS---GMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPH 133 (399)
T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBC
T ss_pred chhHHHHHHHHHHHHCCCeEEEecC---HHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecC
Confidence 4778999999999999999999999 999999999998 8999999999999999887775 368888887643
Q ss_pred ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC
Q 013079 177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI 247 (450)
Q Consensus 177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~ 247 (450)
|+++|++++ ++++++|+ ++||||.+.|+++|.++|+++|+++|+|++|+.. ..+...++ .|+++.|+
T Consensus 134 ~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~ 209 (399)
T 2oga_A 134 EDHPTLDPLLVEKAI-TPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSF 209 (399)
T ss_dssp SSSSSBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEEC
T ss_pred CCCCCcCHHHHHHhc-CCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeC
Confidence 799999999 77888887 5789999999999999999999999999999433 22333334 69999999
Q ss_pred --CCccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079 248 --SKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316 (450)
Q Consensus 248 --sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 316 (450)
+|+++++| +. |+++.+ +++++.+...+..... ..| ..++...++++...++.+....++..++++++
T Consensus 210 ~~sK~~~~~G-~~-g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l 287 (399)
T 2oga_A 210 YPGKNLGCFG-DG-GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEY 287 (399)
T ss_dssp CTTSSSCCSS-CC-EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCccCCcCC-ce-EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999878 65 888775 7888877665432100 001 12344444444444555555566667777888
Q ss_pred HHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 317 ARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 317 ~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
.+.|++++ ..+. ..++. +.+.++.|.+... ....+.+.|... | +.++.+....+-..+
T Consensus 288 ~~~L~~~~g~~~~--~~~~~--------------~~~~~~~~~~~~~-~~~~l~~~L~~~---g-I~v~~~~~~~~~~~~ 346 (399)
T 2oga_A 288 LSGLAGLPGIGLP--VTAPD--------------TDPVWHLFTVRTE-RRDELRSHLDAR---G-IDTLTHYPVPVHLSP 346 (399)
T ss_dssp HHHTTTCTTCBCC--CCCTT--------------EECCCSSEEEECS-SHHHHHHHHHHT---T-BCCBCSCSSCGGGSH
T ss_pred HHHhccCCCcccc--CCCCC--------------CcceeEEEEEECC-CHHHHHHHHHHC---C-CceecCCCCccccch
Confidence 88887763 3332 11110 1111222333211 244566666542 3 455443210000000
Q ss_pred cccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 396 GSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 396 ~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
.... ....+..... ..+.||||++ ...+++.++.+.++|.++.+
T Consensus 347 ~~~~~~~~~~~~p~~~~~----~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 347 AYAGEAPPEGSLPRAESF----ARQVLSLPIG-PHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp HHHTTSCCTTSCHHHHHH----HHHEEEECCS-TTCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCCChhHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHHH
Confidence 0000 0000000000 1367999999 87788888888888876543
No 151
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=222.21 Aligned_cols=322 Identities=11% Similarity=0.047 Sum_probs=220.5
Q ss_pred ccccccCccccCC--HHHHHHhhcCCCCCCCCCccccCC---CChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHH
Q 013079 60 MSIEASATFTVME--PETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAI 130 (450)
Q Consensus 60 ~pi~~att~~~~~--~~~~~~~~~~~~~n~~~~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai 130 (450)
.-++.+|+.+.|. +++|.+.+...++||++.+..+.. ....++++|+.+++++|++ .++| |+| ||+++
T Consensus 14 ~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~---~T~a~ 90 (377)
T 3e77_A 14 GTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGG---GCGQF 90 (377)
T ss_dssp -CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSH---HHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCc---hHHHH
Confidence 4577778877775 489999998888999887554433 4567899999999999974 3788 578 99999
Q ss_pred HHHHHHhccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 013079 131 SSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTL 203 (450)
Q Consensus 131 ~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG 203 (450)
++++.+++.+ ||+|++...++.+.. +...+.+ .|..+++++.+ ++++++.++ +++|++|++.+..|.||
T Consensus 91 n~a~~~l~~~~~Gd~v~~~~~g~~~~~--~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et~tG 166 (377)
T 3e77_A 91 SAVPLNLIGLKAGRCADYVVTGAWSAK--AAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANETVHG 166 (377)
T ss_dssp HHHHHHHGGGSTTCEEEECCCSHHHHH--HHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEETTTT
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHHH--HHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccCchh
Confidence 9999999865 899988887776542 2244454 68888776653 456666667 78999999988888899
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH--------
Q 013079 204 AVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM-------- 273 (450)
Q Consensus 204 ~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~-------- 273 (450)
.++|+ +|+++|+++|+|.+| +...++..+++ +++.|.||++||+| + |+++.++++++.+.
T Consensus 167 ~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G--~-g~l~~~~~~l~~~~~~~p~~~~ 236 (377)
T 3e77_A 167 VEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG--V-TVVIVRDDLLGFALRECPSVLE 236 (377)
T ss_dssp EECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT--C-EEEEEETTSCSCCCTTSCGGGC
T ss_pred eEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc--c-EEEEEcHHHHhhccCCCCchhh
Confidence 99998 478899999999998 66677777766 58899999999888 5 77766554432111
Q ss_pred --HHhhhhhhccCCCchHHHHHH---HHccC-C--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079 274 --DLHQGALMLLGPTMNPKVAFE---LSERI-P--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM 344 (450)
Q Consensus 274 --~~~~~~~~~~g~~~~~~~a~~---~~~~~-~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~ 344 (450)
...... ...++++....+. ++..+ + .++.+.++..++++++.+.|++++ +.+ .|. .+.+
T Consensus 237 ~~~~~~~~--~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~-~~~---~~~~------ 304 (377)
T 3e77_A 237 YKVQAGNS--SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV-CPV---EPQN------ 304 (377)
T ss_dssp HHHHHTTT--TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEE-CCS---CGGG------
T ss_pred HHHHhhcC--CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCcee-cCC---CHHH------
Confidence 111100 1122333222222 22211 1 255566777889999999999874 443 221 1110
Q ss_pred hccCCCcCcEEEEEeCC----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013079 345 ANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420 (450)
Q Consensus 345 ~~~~~g~g~~~~~~l~~----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRi 420 (450)
..+.+++|.+++ .+....|++.+.. .| |.+..|.. ..+.+|+
T Consensus 305 -----rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~G-i~~~~g~~-------------------------~~g~iRi 350 (377)
T 3e77_A 305 -----RSKMNIPFRIGNAKGDDALEKRFLDKALE---LN-MLSLKGHR-------------------------SVGGIRA 350 (377)
T ss_dssp -----BCSSEEEEEESSTTCCHHHHHHHHHHHHH---TT-EESCBCCT-------------------------TTCSEEE
T ss_pred -----cCCcEEEEEcCCCCCchhHHHHHHHHHHH---CC-cEEeCCCC-------------------------cCCEEEE
Confidence 134479999985 2211457776654 23 44333310 0256999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079 421 SVGYLGTLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 421 S~g~~~~~~~~i~~l~~al~~~~~~ 445 (450)
|++ ..++.+.++.|.++|+++.+.
T Consensus 351 S~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 351 SLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 999 889999999999999987653
No 152
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.93 E-value=1.3e-25 Score=223.43 Aligned_cols=320 Identities=10% Similarity=0.047 Sum_probs=200.9
Q ss_pred cccCccccCCH-HHHHHhhcCCCCCCCCCcc---ccCCCChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHH
Q 013079 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFI---YSRHFNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVL 134 (450)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~---y~r~~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al 134 (450)
++++|+..+++ ++|.+.+...++||++.|. .++.....++++|+.+|+++|++ .++| |+| ||+++++++
T Consensus 32 ~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~---~T~a~n~ai 108 (386)
T 3qm2_A 32 SSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG---GRGQFAGVP 108 (386)
T ss_dssp CSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESC---TTHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC---chHHHHHHH
Confidence 45666666664 7788778778899988543 35555678899999999999974 4788 689 999999999
Q ss_pred HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccc-
Q 013079 135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV- 205 (450)
Q Consensus 135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v- 205 (450)
.+++++||+|++...++.+.. +.....+ .| ++++++.+ ++++++.++ +++|++|.+.+..|.||.+
T Consensus 109 ~~l~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~et~tG~~i 183 (386)
T 3qm2_A 109 LNLLGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNETIDGIAI 183 (386)
T ss_dssp HHHCTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEETTTTEEC
T ss_pred HhccCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCcCCcCEec
Confidence 999999999876666555543 2233344 68 78777653 456677777 7899999998888888996
Q ss_pred cCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH----------
Q 013079 206 ANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM---------- 273 (450)
Q Consensus 206 ~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~---------- 273 (450)
+|+++|. +|+++++|.+| +...++..+++ +++.|.||++||+| + |+++.++++++.+.
T Consensus 184 ~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G--~-g~l~v~~~~~~~~~~~~p~~~~~~ 253 (386)
T 3qm2_A 184 DETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG--L-TLVIVREDLLGKAHESCPSILDYT 253 (386)
T ss_dssp CCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT--E-EEEEEEGGGCSCCCTTSCGGGCHH
T ss_pred Cchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc--c-EEEEECHHHHhhhcccCCcHHHHH
Confidence 9999885 79999999998 66677777765 57799999999888 6 88877665532111
Q ss_pred HHhh-hhhhccCCCchHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCC
Q 013079 274 DLHQ-GALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 349 (450)
Q Consensus 274 ~~~~-~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~ 349 (450)
.... +....+.+.........++..+. .++...++..++++++.+.|++.++... +. + +.+
T Consensus 254 ~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~-~~-~--~~~----------- 318 (386)
T 3qm2_A 254 VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRN-DV-A--QAN----------- 318 (386)
T ss_dssp HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEEC-CB-C--GGG-----------
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCccc-CC-C--HHH-----------
Confidence 1100 00001222233222222332221 2455556678888999999988754111 11 0 110
Q ss_pred CcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079 350 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 429 (450)
Q Consensus 350 g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 429 (450)
...++++|.+++......++..|... | |.+..|..| .+.||+|++ ..+++
T Consensus 319 rs~~iv~f~~~~~~~~~~~~~~L~~~---g-I~~~~g~~~-------------------------~~~iRiS~~-~~~t~ 368 (386)
T 3qm2_A 319 RSRMNVPFQLADNTLDKVFLEESFAA---G-LHALKGHRV-------------------------VGGMRASIY-NAMPI 368 (386)
T ss_dssp BCSSEEEEEESSGGGHHHHHHHHHHT---T-EECCBCCTT-------------------------TCSEEEECC-TTSCH
T ss_pred cCceEEEEECCCccccHHHHHHHHHC---C-CEEeCCCCC-------------------------cCeEEEEcC-CCCCH
Confidence 13458999998521115677777642 3 444433211 145999999 99999
Q ss_pred HHHHHHHHHHHHhhhc
Q 013079 430 QRWSQFEKALSRMQDS 445 (450)
Q Consensus 430 ~~i~~l~~al~~~~~~ 445 (450)
++++.|.++|+++.+.
T Consensus 369 edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 369 EGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 153
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.93 E-value=7.8e-25 Score=218.77 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHHh-C----CCeEEE--ecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 99 PTVLNLSRQMAALE-G----TEAAYC--TASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 99 ~~~~~l~~~iA~l~-g----~~~~~~--tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
....++++.+|+++ + .+.+++ |+| |++|++++++.+.. +||+|+++.|+|+++...+. ..|.+
T Consensus 69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g---~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~ 140 (394)
T 2ay1_A 69 SGEPEFQKAMGELILGDGLKSETTATLATVG---GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLP 140 (394)
T ss_dssp SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCC
T ss_pred CCcHHHHHHHHHHHhCCCCCcccEEEEecCC---chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCc
Confidence 34578899999886 4 367888 999 99999999987754 89999999999999988775 25677
Q ss_pred EEEeCC---C----CHHHHHHhhhcC--CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079 170 TTFVDI---S----DHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--- 234 (450)
Q Consensus 170 v~~v~~---~----d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~--- 234 (450)
+..++. + |++++++++.+. +++++++++|+||||.+.+ +++|+++|+++|+++|+|++|..+...
T Consensus 141 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 220 (394)
T 2ay1_A 141 VQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE 220 (394)
T ss_dssp EEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHH
T ss_pred eEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCccc
Confidence 777765 2 899999988322 4678888999999999976 568899999999999999999665442
Q ss_pred ---ccC-C----CCeEEEeCCCCccccCccceEEEEEc---CHHHHHHHHH----HhhhhhhccC-CCchHHHHHHHHcc
Q 013079 235 ---PAR-L----GADVVVHSISKFISGGADIIAGAVCG---PANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSER 298 (450)
Q Consensus 235 ---~~~-~----g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~----~~~~~~~~~g-~~~~~~~a~~~~~~ 298 (450)
+.. + ..++++.|+||.+|++|+|+ ||++. ++++++.+.. ... . ...+ +.+.+.++..++..
T Consensus 221 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~ 297 (394)
T 2ay1_A 221 DAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATRELAQGAMAFLNR-Q-TYSFPPFHGAKIVSTVLTT 297 (394)
T ss_dssp HHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCCHHHHHHHHHHHS
T ss_pred chHHHHHHhhcCCCEEEEEeccCCCcCcCCcc-ceEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCChHHHHHHHHHhcC
Confidence 111 1 34688999999999999998 88876 6665544322 111 1 1222 44444444444332
Q ss_pred C-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 299 I-------PHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 299 ~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
. +++....+++.++++++.+.|++++
T Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 2344555667888889999998753
No 154
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.93 E-value=5.2e-25 Score=219.11 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCC
Q 013079 101 VLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 177 (450)
Q Consensus 101 ~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d 177 (450)
.+.+++.+++++|+ +.+++|+| |++|+++++.++ +||+|+++.|+|+++...+. ... ..|.++.++ .|
T Consensus 60 ~~~~~~~~a~~~g~~~~~~~~~~~g---gt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~-~~g~~~~~v--~d 130 (374)
T 2aeu_A 60 AEKVNEYGLKHLGGDENDKCVGFNR---TSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCK-IVNAKYFES--DK 130 (374)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHH-HTTCEEEEE--SC
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcC---hHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHH-HcCcEEEEe--CC
Confidence 35677778888898 78899999 999999999987 89999999998877544332 122 268888888 68
Q ss_pred HHHHHHhhhcCCceE-EEEecCCCCcc-cccCHHHHHHHHHhcCCEEEEeCCCCCCC----CC--ccCCCCeEEEeCCCC
Q 013079 178 HEMVNSAIVQGRTKV-LYFESISNPTL-AVANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISK 249 (450)
Q Consensus 178 ~~~l~~ai~~~~t~l-v~i~~~~NptG-~v~~l~~I~~la~~~gi~livD~~~~~~~----~~--~~~~g~di~~~S~sK 249 (450)
+++++++ ++++++ |++++|+|||| ...++++|.++|+++|+++|+|++|+.+. .. +...++|+++.|+||
T Consensus 131 ~~~l~~~--~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK 208 (374)
T 2aeu_A 131 VGEILNK--IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDK 208 (374)
T ss_dssp HHHHHTT--CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTS
T ss_pred HHHHHhc--CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcc
Confidence 9999886 578999 99999999999 88999999999999999999999984331 11 444578999999999
Q ss_pred ccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079 250 FISGGADIIAGAVCGPANLVNSMMDLHQ 277 (450)
Q Consensus 250 ~~g~~g~~igG~l~~~~~~~~~l~~~~~ 277 (450)
++++ .++ ||+++++++++.+.....
T Consensus 209 ~l~g--~~~-G~~~~~~~~~~~l~~~~~ 233 (374)
T 2aeu_A 209 LMEG--PRG-GLLAGKKELVDKIYIEGT 233 (374)
T ss_dssp SSSS--CSC-EEEEEEHHHHHHHHHHHH
T ss_pred cccC--cce-EEEEECHHHHHHHHHhhc
Confidence 9774 455 999999999988876654
No 155
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=1.1e-23 Score=207.17 Aligned_cols=288 Identities=14% Similarity=0.076 Sum_probs=197.8
Q ss_pred ccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH--HHHhCCCcc
Q 013079 91 FIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC 166 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~ 166 (450)
|.+++...+..+++++.+++++|.+ .+++|+| |++|+++++..++++||+|+++.|+|+++... +. ..
T Consensus 41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~ 112 (359)
T 1svv_A 41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISG---GTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE-----AT 112 (359)
T ss_dssp CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESC---HHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH-----HT
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCccEEEeCC---chHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh-----cC
Confidence 3344556788999999999999864 5899999 99999999999999999999999999988763 32 25
Q ss_pred CeeEEEeCCC----CHHHHHHhhhcCC-------ceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCC---
Q 013079 167 NITTTFVDIS----DHEMVNSAIVQGR-------TKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS--- 229 (450)
Q Consensus 167 g~~v~~v~~~----d~~~l~~ai~~~~-------t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~--- 229 (450)
|.++.+++.+ |+++|++++ +++ +++|++++| ||||.+.| +++|.++|+++|+++|+|++|.
T Consensus 113 g~~~~~v~~~~~~~d~~~l~~~l-~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 190 (359)
T 1svv_A 113 GHKVVTAPCPDGKLRVADIESAL-HENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA 190 (359)
T ss_dssp TCCEEEECCTTSCCCHHHHHHHH-HHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH
T ss_pred CCeeEEEeCCCCeecHHHHHHHH-HHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhh
Confidence 7888888765 699999998 443 899999999 79999998 8899999999999999999982
Q ss_pred --CCCCCccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH
Q 013079 230 --PLVLSPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 230 --~~~~~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
....+... ...|+++.|++|+.++.| + |+++.++++++.+...................+.........+.
T Consensus 191 ~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (359)
T 1svv_A 191 LSSPVNDLTLADIARLTDMFYIGATKAGGMFG--E-ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFF 267 (359)
T ss_dssp HTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC--E-EEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHH
T ss_pred hcCCCcchhhhhhhhcCCEEEEecccCCCCCc--e-EEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHH
Confidence 22222221 257899999999866444 4 88888888877665432211001111111122222111223345
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
...+++.++++++.+.|+..+.++..|. .+.++++.++ ..+.+.|... +| +.+
T Consensus 268 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~-----~~~~~~l~~~--~g-i~v 320 (359)
T 1svv_A 268 ELGAHSNKMAAILKAGLEACGIRLAWPS-------------------ASNQLFPILE-----NTMIAELNND--FD-MYT 320 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCC-------------------SSSEECBEEE-----HHHHHHHTTT--EE-CEE
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEccCC-------------------ccceEEEEcC-----HHHHHHHHHh--cC-EEE
Confidence 5667778889999999944344443332 3457777775 2456666542 23 333
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
.|. . ...++.||||++ ...+++.++.+.++|.++.
T Consensus 321 -~~~------~-----------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 321 -VEP------L-----------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp -EEE------E-----------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC-
T ss_pred -Eec------c-----------------cCCCceEEEEcc-CcCCHHHHHHHHHHHHHHH
Confidence 110 0 001468999999 7777777888877777653
No 156
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.93 E-value=4.1e-24 Score=215.86 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=192.3
Q ss_pred CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhCCC---
Q 013079 96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--- 164 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~--- 164 (450)
+..+..++++++|++++|.+.++||+| |++|++++++.+.. +| ++||+.++.|++...........
T Consensus 96 ~~~~~~~~l~~~la~~~g~~~v~~~~g---gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~ 172 (420)
T 2pb2_A 96 FTNEPALRLGRKLIDATFAERVLFMNS---GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKY 172 (420)
T ss_dssp SCCHHHHHHHHHHHHHSSCSEEEEESS---HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHH
T ss_pred cCCHHHHHHHHHHHhhCCCCeEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccc
Confidence 357889999999999999999999999 99999999998765 67 48999999998764332111110
Q ss_pred -----ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccc----cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079 165 -----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS- 234 (450)
Q Consensus 165 -----~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v----~~l~~I~~la~~~gi~livD~~~~~~~~~- 234 (450)
.....+.+++..|+++|++++ ++++++|++++++|++|.+ .++++|.++|+++|+++|+||+|.++...
T Consensus 173 ~~~~~p~~~~~~~~~~~d~~~le~~i-~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g 251 (420)
T 2pb2_A 173 SDGFGPKPADIIHVPFNDLHAVKAVM-DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG 251 (420)
T ss_dssp HTTSSSCCSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cccCCCCCCCeEEecCCCHHHHHHHh-ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC
Confidence 011236677777999999999 7889999999999988862 46899999999999999999999655432
Q ss_pred ------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHH
Q 013079 235 ------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 308 (450)
Q Consensus 235 ------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 308 (450)
......|++ |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++..++..++. ....++
T Consensus 252 ~~~~~~~~~~~~dii--t~sK~l~-~G~~i-G~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~ 325 (420)
T 2pb2_A 252 DLFAYMHYGVTPDIL--TSAKALG-GGFPV-SAMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQG 325 (420)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHH
T ss_pred cHHHHHhcCCCCCeE--Eeccccc-CCCce-EEEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHH
Confidence 112346877 5789999 68898 888888887766543211 11233343444444333433333 345566
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhccccccccccccc
Q 013079 309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLG 386 (450)
Q Consensus 309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~l~~~~~~g~i~vs~G 386 (450)
..++++++.+.|+++... +|... ...+.|.+++|+++... ....+.+.|... | +.+..+
T Consensus 326 ~~~~~~~l~~~L~~~~~~--~~~~~-------------~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~---G-i~v~~~ 386 (420)
T 2pb2_A 326 IHTKRQQFVQHLQAIDEQ--FDIFS-------------DIRGMGLLIGAELKPKYKGRARDFLYAGAEA---G-VMVLNA 386 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCEE-------------EEEEETTEEEEEECGGGTTCHHHHHHHHHHT---T-EECEES
T ss_pred HHHHHHHHHHHHHHHHhc--CCCeE-------------EEEecceEEEEEECCCchHHHHHHHHHHHHC---C-CEEEeC
Confidence 778888888888764100 01000 00135779999997431 255677776642 3 333322
Q ss_pred cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
.++.||||++ ...+++.++.+.++|.+
T Consensus 387 ---------------------------~~~~iRl~~~-~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 387 ---------------------------GADVMRFAPS-LVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp ---------------------------STTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 0368999987 55555555555555544
No 157
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.93 E-value=4.5e-24 Score=214.70 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHh-C-------CCeEEE--ecChHHHHHHHHHHH--HHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079 99 PTVLNLSRQMAALE-G-------TEAAYC--TASDKAGMSAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 166 (450)
Q Consensus 99 ~~~~~l~~~iA~l~-g-------~~~~~~--tsg~~~gt~ai~~al--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~ 166 (450)
....++++.+|+++ + .+.+++ |+| |++|+++++ ..++.+||+|+++.|+|+++...+. ..
T Consensus 73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g---~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~ 144 (412)
T 1yaa_A 73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS---GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQ 144 (412)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TT
T ss_pred CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc---hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----Hc
Confidence 34577888888887 3 467899 999 999999884 3445789999999999999988775 35
Q ss_pred CeeEEEeCC-------CCHHHHHHhhhcC--CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079 167 NITTTFVDI-------SDHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS 234 (450)
Q Consensus 167 g~~v~~v~~-------~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~ 234 (450)
|.++..++. .|+++|++++.+. .+.++++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+.
T Consensus 145 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 224 (412)
T 1yaa_A 145 GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATG 224 (412)
T ss_dssp TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSS
T ss_pred CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 777777765 1899999988332 2455656999999999975 668899999999999999999665432
Q ss_pred -------cc-C---C-C---CeEEEeCCCCccccCccceEEEEE--c-----CHH----HHHHHHHHhhhhhhccCCCch
Q 013079 235 -------PA-R---L-G---ADVVVHSISKFISGGADIIAGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMN 288 (450)
Q Consensus 235 -------~~-~---~-g---~di~~~S~sK~~g~~g~~igG~l~--~-----~~~----~~~~l~~~~~~~~~~~g~~~~ 288 (450)
+. . . . .++++.|+||.+|++|+|+ ||++ + +++ +++.+....... ...++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri-G~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~ 302 (412)
T 1yaa_A 225 DLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQAQNKTIKPAVTSQLAKIIRSE-VSNPPAYG 302 (412)
T ss_dssp CHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCTTHHHHHHHHHHHHHHHHHTT-TSSCCHHH
T ss_pred cccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc-eEEEEEecCCCCCHHHHHHHHHHHHHHHhhc-cCCCChHH
Confidence 11 1 1 2 5789999999999889998 8887 7 555 666665532211 11223334
Q ss_pred HHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 289 PKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 289 ~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
+.++..++... +++....+++.++++++.+.|++++
T Consensus 303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44443344332 2355556677888999999998865
No 158
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.93 E-value=4.7e-25 Score=220.79 Aligned_cols=281 Identities=12% Similarity=0.148 Sum_probs=190.5
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc------C-CCEEEEeCCCchhHHH-HHHHhCCCccCe
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNI 168 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~------~-gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~ 168 (450)
..+..+++++.|++++|.+.+++|+| |++|+.++++.+.. + +++|++.++.|++... .+. . .|.
T Consensus 80 ~~~~~~~l~~~la~~~g~~~v~~~~g---g~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~----~g~ 151 (397)
T 2ord_A 80 WNRPQMELAELLSKNTFGGKVFFANT---GTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-A----TGQ 151 (397)
T ss_dssp EEHHHHHHHHHHHHTTTSCEEEEESS---HHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-H----SBC
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-c----cCC
Confidence 46788999999999999999999999 99999999988753 5 4789999999976443 332 1 232
Q ss_pred e------------EEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccc-c---cCHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079 169 T------------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLV 232 (450)
Q Consensus 169 ~------------v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~-v---~~l~~I~~la~~~gi~livD~~~~~~~ 232 (450)
+ +..++.+|+++|++++ ++++++|++++|+||||. + .++++|.++|+++|+++|+|++|+++.
T Consensus 152 ~~~~~~~~p~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (397)
T 2ord_A 152 PKYQKPFEPLVPGFEYFEFNNVEDLRRKM-SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMG 230 (397)
T ss_dssp HHHHGGGCSCCTTEEEECTTCHHHHHHHC-CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred hhhccccCCCCCCeeEecCCCHHHHHHHh-hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 2 6777778999999999 788999999999999999 3 578999999999999999999996554
Q ss_pred CC--cc---CCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH
Q 013079 233 LS--PA---RLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 305 (450)
Q Consensus 233 ~~--~~---~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 305 (450)
.. +. .++ .|++ |+||.++ +|.|+ |+++.+++++ .+..... .....++.+.+.++..++...+. ...
T Consensus 231 ~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~ 303 (397)
T 2ord_A 231 RTGKLFAYQKYGVVPDVL--TTAKGLG-GGVPI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGF 303 (397)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTH
T ss_pred cCccchhhhhhCCCCCee--eeccccC-CCcCe-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCH
Confidence 32 11 123 6766 5789999 68898 8888777665 4432111 11122233333333333332222 334
Q ss_pred HHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079 306 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 306 ~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v 383 (450)
.+++.++++++.+.|++.+ ..+... ..+.|++++|.++.......+.+.|... | +.+
T Consensus 304 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v 362 (397)
T 2ord_A 304 LEEVEEKGNYLMKKLQEMKEEYDVVAD-----------------VRGMGLMIGIQFREEVSNREVATKCFEN---K-LLV 362 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEE-----------------EEEETTEEEEEECTTSCHHHHHHHHHHT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEE-----------------EEEEeEEEEEEECChHHHHHHHHHHHHC---C-CEE
Confidence 5667778888888887642 211000 0034679999997432355677776542 3 333
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..| .++.||||++ ...+++.++.+.++|.++
T Consensus 363 ~~~---------------------------~~~~iRis~~-~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 363 VPA---------------------------GNNTIRFLPP-LTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp EEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ccC---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 322 1468999987 656666666666666554
No 159
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=6.3e-24 Score=213.51 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=158.9
Q ss_pred CCccccCCCChhHHHHHHHHHHHh-CC-------CeE--EEecChHHHHHHHHHHH---HHhccCCCEEEEeCCCchhHH
Q 013079 89 DFFIYSRHFNPTVLNLSRQMAALE-GT-------EAA--YCTASDKAGMSAISSVL---MQLCSSGGHVVAARTLYGGTH 155 (450)
Q Consensus 89 ~~~~y~r~~~~~~~~l~~~iA~l~-g~-------~~~--~~tsg~~~gt~ai~~al---~~l~~~gd~Vi~~~~~y~~~~ 155 (450)
..+.|+. .+...++++.+|+++ |. +.+ ..|++ |++|+.++. ..++++||+|+++.|.|.++.
T Consensus 71 ~~~~y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~---g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~ 145 (409)
T 4eu1_A 71 TNMDYAP--VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLG---GTGALRIGGDLLNRFVANCNRIYGPDVGYPNHE 145 (409)
T ss_dssp SCCCCCC--TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESH---HHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHH
T ss_pred ccccCCC--CCCcHHHHHHHHHHHcCCCchhhccCceeeeeccc---chHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHH
Confidence 3344543 344568899999875 53 345 45899 999988754 345688999999999999998
Q ss_pred HHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEE
Q 013079 156 ALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV 223 (450)
Q Consensus 156 ~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~li 223 (450)
..+. ..|.++..++.. |+++|++++.+ ++++++++++||||||.+.+ +++|+++|+++|+++|
T Consensus 146 ~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li 220 (409)
T 4eu1_A 146 SIFA-----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPF 220 (409)
T ss_dssp HHHH-----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHH-----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 8775 368888888751 89999999842 35677778999999999987 5569999999999999
Q ss_pred EeCCCCCCCCCc------------cCCCCeEEEeCCCCccccCccceEEEE---EcCHH----HHHHHHHHhhhhhhccC
Q 013079 224 VDNTFSPLVLSP------------ARLGADVVVHSISKFISGGADIIAGAV---CGPAN----LVNSMMDLHQGALMLLG 284 (450)
Q Consensus 224 vD~~~~~~~~~~------------~~~g~di~~~S~sK~~g~~g~~igG~l---~~~~~----~~~~l~~~~~~~~~~~g 284 (450)
+|++|..+.+.. ...+..+++.|+||.+|++|+|+ ||+ +.+++ +++.+....... ....
T Consensus 221 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~ 298 (409)
T 4eu1_A 221 VDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTASAEEAKRLVSQLALLIRPM-YNNP 298 (409)
T ss_dssp EEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSC
T ss_pred EeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCC
Confidence 999996665432 11245688999999999999999 885 56677 555554433211 1223
Q ss_pred CCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 285 PTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 285 ~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
+.+.+.++..++.. .+.+....+++.++++++.+.|++++
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 299 PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444433332 22344556678889999999999875
No 160
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.92 E-value=6.8e-25 Score=219.39 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=190.9
Q ss_pred CChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHH-HHHHhCCC-------
Q 013079 97 FNPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR------- 164 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~~~~------- 164 (450)
..+..+++++.+++++ +.+.+++|+| |++|++++++++. .+||+|++.++.|++... .+. ....
T Consensus 85 ~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~ 160 (395)
T 1vef_A 85 PTPMRGEFYRTLTAILPPELNRVFPVNS---GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPF 160 (395)
T ss_dssp CCHHHHHHHHHHHHTSCTTEEEEEEESS---HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGG
T ss_pred CCHHHHHHHHHHHHhcCCCcCEEEEcCc---HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCccccccc
Confidence 5678999999999999 4567899999 9999999998764 578999999999976433 332 1110
Q ss_pred -ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013079 165 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----- 234 (450)
Q Consensus 165 -~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~----- 234 (450)
.....+..++..|+++|++++ ++++++|++++++||||.+.| +++|.++|+++|+++|+|++|+++...
T Consensus 161 ~p~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~ 239 (395)
T 1vef_A 161 LPLVEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 239 (395)
T ss_dssp CSCSSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred CCCCCCeeEeCCCcHHHHHHHh-ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhH
Confidence 011125566667999999999 778999999988999999887 999999999999999999999655321
Q ss_pred --ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079 235 --PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 312 (450)
Q Consensus 235 --~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 312 (450)
......|++ |+||++++ |.++ |+++.++++++.+..... .....++.+.+.++..++..+.. ....++..++
T Consensus 240 ~~~~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~ 313 (395)
T 1vef_A 240 FEHFGIVPDIL--TLAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAAEL 313 (395)
T ss_dssp HHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred hhhcCCCCCEE--EEcccccC-CCce-EEEEehHHHHhhhccCCc-CCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence 122346766 68999997 8888 888888777665543111 11111222222222222222111 2244566788
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccc
Q 013079 313 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETL 391 (450)
Q Consensus 313 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~ 391 (450)
++++.+.|++++..+... ..+.|.+++|.++.. ...+.+.|. .. | +.+..+
T Consensus 314 ~~~l~~~l~~~~~~~~~~-----------------~~~~g~~~~~~~~~~--~~~l~~~l~~~~---g-i~v~~~----- 365 (395)
T 1vef_A 314 GPWFMEKLRAIPSPKIRE-----------------VRGMGLMVGLELKEK--AAPYIARLEKEH---R-VLALQA----- 365 (395)
T ss_dssp HHHHHHHHHTSCCTTEEE-----------------EEEETTEEEEEESSC--SHHHHHHHHHHH---C-EECEES-----
T ss_pred HHHHHHHHHHhhcCceEE-----------------EEEEEEEEEEEEcCh--HHHHHHHHHHHC---C-eEEecC-----
Confidence 888999998765311000 002467999999742 345666655 32 2 333321
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.++.||||++ ...+++.++.+.++|.++
T Consensus 366 ----------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 366 ----------------------GPTVIRFLPP-LVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp ----------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 1478999998 777777777777777654
No 161
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.92 E-value=5.7e-24 Score=220.44 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHhCCC----eE--EEecChHHHHHHHHHHHHHhccCC--------CEEEEeCCCchhHHHHHHHhCCCcc
Q 013079 101 VLNLSRQMAALEGTE----AA--YCTASDKAGMSAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRAC 166 (450)
Q Consensus 101 ~~~l~~~iA~l~g~~----~~--~~tsg~~~gt~ai~~al~~l~~~g--------d~Vi~~~~~y~~~~~~~~~~~~~~~ 166 (450)
.+++++.+++++|.+ .+ ++|+| |++|+.++++++..+| |+|+++.+.|.++...+. ..
T Consensus 141 e~~l~~~la~~~g~~~~~~~v~~~~t~g---gt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~ 212 (514)
T 3mad_A 141 EAEVVAMTAHMLGGDAAGGTVCGTVTSG---GTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YF 212 (514)
T ss_dssp HHHHHHHHHHHTTGGGGTSCCEEEEESS---HHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HH
T ss_pred HHHHHHHHHHHcCCCCccCCcceEEcCc---HHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----Hc
Confidence 345667779999876 56 99999 9999999999987766 899999999999888775 35
Q ss_pred CeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC---------
Q 013079 167 NITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--------- 232 (450)
Q Consensus 167 g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--------- 232 (450)
|.+++.++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.
T Consensus 213 G~~v~~v~~~~~~~~d~~~Le~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~ 291 (514)
T 3mad_A 213 GIKLVRTPLDADYRADVAAMREAI-TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGY 291 (514)
T ss_dssp TCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred CCeeEEeeeCCCCCCCHHHHHHHh-ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence 8888888866 999999999 7899999999999999999999999999999999999999986442
Q ss_pred ----CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-hh-------hhccCCCch--HHHHHHHHc-
Q 013079 233 ----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-------LMLLGPTMN--PKVAFELSE- 297 (450)
Q Consensus 233 ----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-------~~~~g~~~~--~~~a~~~~~- 297 (450)
++....++|+++.|+||+++++ .++ |+++.+++.......... .+ ....|.... ...++.++.
T Consensus 292 ~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~ 369 (514)
T 3mad_A 292 PVPPFDFRLEGVTSVSADTHKYGYGA-KGT-SVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLS 369 (514)
T ss_dssp CCCCCSTTSTTCCEEEECTTTTTCCC-SSC-EEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCcEEEECchhccCCC-CCe-EEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHH
Confidence 2223448999999999995533 345 777655444332110000 00 001222222 122233222
Q ss_pred -cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079 298 -RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY 375 (450)
Q Consensus 298 -~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~ 375 (450)
....+.+..++..++++++.+.|++++ ..+..+. .++++|...+.+ ...+.+.|...
T Consensus 370 l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--------------------~~~~~~~~~~~~-~~~l~~~L~~~ 428 (514)
T 3mad_A 370 LGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--------------------LWVIAVASDELN-IYQVMEEMAGR 428 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--------------------SSEEEEECSSSC-HHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--------------------eEEEEEeCCCCC-HHHHHHHHHhc
Confidence 223456677778889999999999874 4544322 237888776432 45677777642
Q ss_pred ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHhhhcC
Q 013079 376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRMQDSG 446 (450)
Q Consensus 376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~~~~~ 446 (450)
| +.+ .|. + .++.+|++++. .+++++.++.|.++++++.+.+
T Consensus 429 ---G-i~v-~g~------------------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~ 473 (514)
T 3mad_A 429 ---G-WRL-NGL------------------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHP 473 (514)
T ss_dssp ---T-CBC-EEE------------------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred ---C-CEe-ccC------------------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 332 110 0 03579999872 2567788888888888776544
No 162
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=3.8e-24 Score=219.50 Aligned_cols=290 Identities=17% Similarity=0.131 Sum_probs=196.8
Q ss_pred ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHh----ccCCC-----EEEEeCCCchhHHHHHHHhCCCccC
Q 013079 98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQL----CSSGG-----HVVAARTLYGGTHALLTHFFPRACN 167 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l----~~~gd-----~Vi~~~~~y~~~~~~~~~~~~~~~g 167 (450)
....+++++.+++++|.+.. ++|+| |++|+.+++..+ .++|| +|+++.+.|+++...+. ..|
T Consensus 106 ~~l~~~l~~~la~~~g~~~~~~~~~g---gt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G 177 (474)
T 1wyu_B 106 LRLMWELGEYLKALTGMDAITLEPAA---GAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS-----MAG 177 (474)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH-----HTT
T ss_pred HHHHHHHHHHHHHHHCCCceeecChH---HHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH-----HCC
Confidence 35678899999999998765 57799 999999877654 35787 99999999999887764 368
Q ss_pred eeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cCHHHHHHHHHhcCCEEEEeCCCCCC---CCCccCC
Q 013079 168 ITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPL---VLSPARL 238 (450)
Q Consensus 168 ~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~~~~---~~~~~~~ 238 (450)
.++++++.+ |+++|++++ +++|++|++++| ||+|.+ .++++|+++|+++|+++|+|++|... ..++..+
T Consensus 178 ~~vv~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~ 255 (474)
T 1wyu_B 178 YQVREIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDM 255 (474)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHH
T ss_pred CEEEEecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccC
Confidence 899988875 899999999 788999999998 689999 79999999999999999999998322 2234445
Q ss_pred CCeEEEeCCCCccccC-c---cceEEEEEcCHHHHHHHHH-Hh--hh---------------hhhccCCCchHHHHHHHH
Q 013079 239 GADVVVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH--QG---------------ALMLLGPTMNPKVAFELS 296 (450)
Q Consensus 239 g~di~~~S~sK~~g~~-g---~~igG~l~~~~~~~~~l~~-~~--~~---------------~~~~~g~~~~~~~a~~~~ 296 (450)
++|+++.|+||+++++ | .++ |+++.++++++.+.. .. .+ .....++...+.+++..+
T Consensus 256 g~di~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l 334 (474)
T 1wyu_B 256 GFDVVHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYI 334 (474)
T ss_dssp TCSEEECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHH
Confidence 8999999999999866 3 366 999888877665531 00 00 000112222233333332
Q ss_pred c--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079 297 E--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 374 (450)
Q Consensus 297 ~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~ 374 (450)
. +.+.+.+..++..++++++.+.|++.+.++..+. .....+++.++.......+.+.|..
T Consensus 335 ~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~ 396 (474)
T 1wyu_B 335 RTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDG------------------PSMHEFVAQPPEGFRALDLAKGLLE 396 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS------------------SCCSCEEEBCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC------------------CcceEEEEEcCCCCCHHHHHHHHHH
Confidence 2 1234555667778899999999988755542221 0111134444321224566666654
Q ss_pred cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
. | +.+. + ... + ...++.||||++ ..++++.++.+.++|.++.
T Consensus 397 ~---G-i~~~-~----------~~~----~-------~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 397 L---G-FHPP-T----------VYF----P-------LIVKEALMVEPT-ETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp T---T-CCCC-E----------ESC----S-------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred C---C-cccc-c----------ccc----c-------cccCCEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 2 3 2221 1 000 0 011478999999 7667777777777777654
No 163
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.92 E-value=5.6e-24 Score=215.75 Aligned_cols=288 Identities=13% Similarity=0.128 Sum_probs=184.8
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---------cCC-CEEEEeCCCchhHHHHHHHhCCC--
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR-- 164 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~-- 164 (450)
..+...+++++|++++|.+.++||+| |++|+.++++.+. .+| ++||+.++.|++...........
T Consensus 105 ~~~~~~~l~~~la~~~g~~~v~~~~s---GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~ 181 (433)
T 1z7d_A 105 FSVPLGICERYLTNLLGYDKVLMMNT---GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK 181 (433)
T ss_dssp EEHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence 56778999999999999999999999 9999999998753 367 89999999998864422111000
Q ss_pred ------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079 165 ------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS 234 (450)
Q Consensus 165 ------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~ 234 (450)
.....+..++..|+++|++++.++++++|++++++|++|.+. ++++|.++|+++|+++|+||+|+++...
T Consensus 182 ~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~ 261 (433)
T 1z7d_A 182 CTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT 261 (433)
T ss_dssp ----------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcC
Confidence 001356667778999999998446789999998888999875 7999999999999999999999655321
Q ss_pred -------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079 235 -------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 306 (450)
Q Consensus 235 -------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 306 (450)
......|++ |++|.++ +| +++ |++++++++++.+..... ..+..++.+.+.++..++..++. ....
T Consensus 262 g~~~~~~~~~~~~di~--t~sK~l~-~G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~ 335 (433)
T 1z7d_A 262 GKLLCVHHYNVKPDVI--LLGKALS-GGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLIN-EKLC 335 (433)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGG-TTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHH-TTHH
T ss_pred CcchhhHhcCCCCCEE--EECcccc-CCCCCe-EEEEECHHHHhhhccccc-cccCCCCHHHHHHHHHHHHHHHh-ccHH
Confidence 112346776 6889999 57 787 999999888766543211 11222333333333333222111 1234
Q ss_pred HHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccc
Q 013079 307 KEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV 383 (450)
Q Consensus 307 ~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~v 383 (450)
++..++++++.+.|+++ +..... ...+.|.+++|.++.. .....+.+.|... | +.+
T Consensus 336 ~~~~~~~~~l~~~L~~l~~~~~~~~-----------------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~---G-v~v 394 (433)
T 1z7d_A 336 ENAEKLGGPFLENLKRELKDSKIVR-----------------DVRGKGLLCAIEFKNELVNVLDICLKLKEN---G-LIT 394 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEE-----------------EEEEETTEEEEEECTTTCCHHHHHHHHHHT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeE-----------------EEEeeeeEEEEEEccChhHHHHHHHHHHHC---C-eEE
Confidence 55677778888888764 221100 0114677999999743 1245677766542 3 332
Q ss_pred ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..+ ..+.|||+++ ...+++.++.+.++|.++
T Consensus 395 ~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 395 RDV---------------------------HDKTIRLTPP-LCITKEQLDECTEIIVKT 425 (433)
T ss_dssp CEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ecC---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 211 1478999998 655555566655555543
No 164
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.92 E-value=4.6e-25 Score=217.51 Aligned_cols=303 Identities=11% Similarity=0.029 Sum_probs=196.4
Q ss_pred HHHHHhhcCCCCCCCC-CccccCC---CChhHHHHHHHHHHHhCCC---eEEEecChHHH-HHHHHHHHHHhccC---CC
Q 013079 74 ETMRRMFAGELGPDRD-FFIYSRH---FNPTVLNLSRQMAALEGTE---AAYCTASDKAG-MSAISSVLMQLCSS---GG 142 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~-~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~g-t~ai~~al~~l~~~---gd 142 (450)
+++.+.+... .|+.. .|.++.. ..+..+++++.+|+++|.+ .+++|+| + ++|+.+++..++.+ ||
T Consensus 20 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g---~gt~al~~~~~~l~~~~~~g~ 95 (360)
T 1w23_A 20 ERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQG---GASLQFTMLPMNLLTKGTIGN 95 (360)
T ss_dssp HHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECC---cchHHHHHHHHHhcCCCCccc
Confidence 6666655443 45432 2333221 2235789999999999975 6899999 8 99999999988765 55
Q ss_pred EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHH-hhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079 143 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFESISNPTLAVANIPELSRLA 215 (450)
Q Consensus 143 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~-ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la 215 (450)
.|+++.++|..... +. ..| ++++++.+ |++++++ ++ +++|++|++++|+||||.+.+ + ++
T Consensus 96 ~vi~~~~~~~~~~~-~~-----~~g-~~~~v~~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~~~nptG~~~~--~---i~ 162 (360)
T 1w23_A 96 YVLTGSWSEKALKE-AK-----LLG-ETHIAASTKANSYQSIPDFSEFQL-NENDAYLHITSNNTIYGTQYQ--N---FP 162 (360)
T ss_dssp EEECSHHHHHHHHH-HH-----TTS-EEEEEEECGGGTSCSCCCGGGCCC-CTTEEEEEEESEETTTTEECS--S---CC
T ss_pred EEEecchhHHHHHH-HH-----HhC-CeEEeecccccCcCCccchHhhcc-CCCCCEEEEeCCCCCcceecc--c---cc
Confidence 67766666654322 22 268 88877642 6678888 78 788999999999999999977 3 33
Q ss_pred HhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh--------hccCCC
Q 013079 216 HDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL--------MLLGPT 286 (450)
Q Consensus 216 ~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~--------~~~g~~ 286 (450)
+++|+++|+|++|+..... ..+ ..|++++|+||.+|++| + |+++.++++++.+........ .....+
T Consensus 163 ~~~~~~li~D~a~~~~~~~-~~~~~~di~~~s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T 1w23_A 163 EINHAPLIADMSSDILSRP-LKVNQFGMIYAGAQKNLGPSG--V-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNT 238 (360)
T ss_dssp CCCSSCEEEECTTTTTSSC-CCGGGCSEEEEETTTTTSCTT--C-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSC
T ss_pred ccCCceEEEechhhcCCCC-cCcccCCEEEEEcccccCCCC--c-EEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCC
Confidence 4899999999998433221 122 23899999999999776 6 898888877655433211000 011112
Q ss_pred chHH---HHHHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079 287 MNPK---VAFELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 358 (450)
Q Consensus 287 ~~~~---~a~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 358 (450)
++.. ++..++..+ . .+....+++.++++++.+.|++++ . ....+ |.. ..+.+++|.
T Consensus 239 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~~-----------~~~~~~~~~ 302 (360)
T 1w23_A 239 PPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-----KGS-----------RSLMNVTFN 302 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-----GGG-----------BCSSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC-----chh-----------ccCcEEEEE
Confidence 2222 121222211 1 355566778889999999998876 2 22100 110 124489999
Q ss_pred eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013079 359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 438 (450)
Q Consensus 359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 438 (450)
+++......+++.|... | +.+..|.. .++.||||++ ..++++.++.+.++
T Consensus 303 ~~~~~~~~~~~~~l~~~---g-i~~~~~~~-------------------------~~~~iRis~~-~~~~~~~i~~~~~~ 352 (360)
T 1w23_A 303 LRNEELNQQFLAKAKEQ---G-FVGLNGHR-------------------------SVGGCRASIY-NAVPIDACIALREL 352 (360)
T ss_dssp CSSHHHHHHHHHHHHHT---T-EESCBCCT-------------------------TTCSEEEECC-TTSCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHC---C-eeeecCCC-------------------------CCCeEEEEec-CCCCHHHHHHHHHH
Confidence 98654567788877642 3 34332210 1478999999 88788888888888
Q ss_pred HHHhh
Q 013079 439 LSRMQ 443 (450)
Q Consensus 439 l~~~~ 443 (450)
|.++.
T Consensus 353 l~~~~ 357 (360)
T 1w23_A 353 MIQFK 357 (360)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 165
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.92 E-value=1.5e-23 Score=218.21 Aligned_cols=150 Identities=11% Similarity=0.240 Sum_probs=122.6
Q ss_pred CeEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-------CCHHHHH
Q 013079 115 EAAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVN 182 (450)
Q Consensus 115 ~~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-------~d~~~l~ 182 (450)
+++++|+| +++++.+++.+ ++++||+|++++|.|+++..... +.. .|.++..++. .|+++|+
T Consensus 166 ~~I~~t~G---~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~-~g~~~~~v~~~~~~~~~~d~~~l~ 239 (546)
T 2zy4_A 166 VNLFAVEG---GTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE--LAQ-YALEEVAINADPSLNWQYPDSELD 239 (546)
T ss_dssp EEEEEEEH---HHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH--STT-SCCEEEEEECBGGGTTBCCHHHHG
T ss_pred ceEEEECC---HHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH--HcC-CCcEEEEEecCcccCCCCCHHHHH
Confidence 57899999 99999999987 47899999999999999987653 222 4677777764 3789998
Q ss_pred HhhhcCCceEEEEecCCCCcccccC---HHHHHHHH--HhcCCEEEEeCCCCCCCCCcc---CC--CCeEEEeCCCCccc
Q 013079 183 SAIVQGRTKVLYFESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSPA---RL--GADVVVHSISKFIS 252 (450)
Q Consensus 183 ~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la--~~~gi~livD~~~~~~~~~~~---~~--g~di~~~S~sK~~g 252 (450)
+++ ++++++|++++||||||.+.+ +++|+++| +++|+++|+|++|..+...+. .. +.++++.|+||.+|
T Consensus 240 ~~~-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g 318 (546)
T 2zy4_A 240 KLK-DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFG 318 (546)
T ss_dssp GGG-STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTT
T ss_pred Hhh-CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccC
Confidence 887 788999999999999999986 66788888 778999999999965543221 11 57899999999999
Q ss_pred cCccceEEEEEcCHH-HHHHH
Q 013079 253 GGADIIAGAVCGPAN-LVNSM 272 (450)
Q Consensus 253 ~~g~~igG~l~~~~~-~~~~l 272 (450)
++|+|+ ||++++++ +++.+
T Consensus 319 ~~GlRi-G~~~~~~~~l~~~l 338 (546)
T 2zy4_A 319 ATGWRL-GVVAAHQQNVFDLA 338 (546)
T ss_dssp CGGGCE-EEEEEESSCHHHHH
T ss_pred CCCcce-EEEEECCHHHHHHH
Confidence 999998 99988764 76665
No 166
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.92 E-value=1.1e-23 Score=214.93 Aligned_cols=325 Identities=11% Similarity=0.049 Sum_probs=204.9
Q ss_pred ccccCccccCC-HHHHHHhhcCCCCCCCC--CccccCC--------CChhHHHHHHHHHHHhCCCe-EEEecChHHHHH-
Q 013079 62 IEASATFTVME-PETMRRMFAGELGPDRD--FFIYSRH--------FNPTVLNLSRQMAALEGTEA-AYCTASDKAGMS- 128 (450)
Q Consensus 62 i~~att~~~~~-~~~~~~~~~~~~~n~~~--~~~y~r~--------~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~- 128 (450)
-++++|+..+. .++|.......+.++.+ .+.+... .....+++++.+|+++|++. ++||+| ||+
T Consensus 85 d~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~t~g---~te~ 161 (456)
T 2z67_A 85 KSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPI---STGM 161 (456)
T ss_dssp TCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESS---CHHH
T ss_pred cccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCCEEEeCc---HHHH
Confidence 35667766555 36665533223344332 2222211 12345779999999999865 899999 994
Q ss_pred HHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---C-----CHHHHHHhh-hc---CCceEEE
Q 013079 129 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAI-VQ---GRTKVLY 194 (450)
Q Consensus 129 ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---~-----d~~~l~~ai-~~---~~t~lv~ 194 (450)
++.+++.++.. +|++|++++++|+++...+. ..|+++++++. + |+++|++++ .. .++.+|+
T Consensus 162 a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv 236 (456)
T 2z67_A 162 SISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVL 236 (456)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEE
Confidence 55556665433 67789999999999887764 26888877764 2 899999998 32 4788888
Q ss_pred EecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc---CC--CCeEEEeCCCCccccCccceEEEEEc-CH
Q 013079 195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PA 266 (450)
Q Consensus 195 i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~---~~--g~di~~~S~sK~~g~~g~~igG~l~~-~~ 266 (450)
++++|||||.+.|+++|+++|+++|+++|+|++|+.... .+. .+ ++|+++.|+||+++++ .++ |+++. ++
T Consensus 237 ~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-~g~-G~l~~~~~ 314 (456)
T 2z67_A 237 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG-GLVYSTDA 314 (456)
T ss_dssp EESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC-EEEEESCH
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-CCe-EEEEEcCH
Confidence 999999999999999999999999999999999854322 111 12 7899999999986543 335 88877 57
Q ss_pred HHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHH
Q 013079 267 NLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHEL 340 (450)
Q Consensus 267 ~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l 340 (450)
++++.+.....+ .........++.++. ..+.+.+..++..++++++.+.|+++ +..+..|.
T Consensus 315 ~~~~~l~~~~~g----~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--------- 381 (456)
T 2z67_A 315 EFIKEISLSYPG----RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--------- 381 (456)
T ss_dssp HHHHHHHTTSCS----CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC---------
T ss_pred HHHhhcCcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC---------
Confidence 777766322111 111111222222222 22345566677888999999999886 44333221
Q ss_pred HHHHhccCCCcCcEEEEEe--CCHHHHHHHHHHhhccccccccccc--cccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079 341 LKSMANKEYGFGGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISAG 416 (450)
Q Consensus 341 ~~~~~~~~~g~g~~~~~~l--~~~~~~~~~~~~l~~~~~~g~i~vs--~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 416 (450)
++++|.+ ++. ...+.+.|...+..+ +.+. .| ... ..+.. -...+
T Consensus 382 ------------~~v~~~~~~~~~--~~~l~~~L~~~gi~~-~rv~~~~g-~f~-G~~~~---------------~~~~~ 429 (456)
T 2z67_A 382 ------------SPIASCISVNSD--PVEIAAKLYNLRVTG-PRGIKKTD-HFG-NCYLG---------------TYTHD 429 (456)
T ss_dssp ------------CSSEEEEECSSC--HHHHHHHHHHTTEES-CEEECTTC-HHH-HTCSS---------------CCSCC
T ss_pred ------------CeEEEEEecccH--HHHHHHHHHHcCCCc-ceEEeecC-ccc-ccccc---------------ccCcc
Confidence 2666777 542 234445444311000 1111 00 000 00000 01247
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 417 ~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
+||+|++ ..++++.++.+.++|+++
T Consensus 430 ~vr~s~~-~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 430 YIVMNAA-IGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp EEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred hhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence 8999999 888899999998888764
No 167
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.86 E-value=7.3e-27 Score=233.63 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..++++.+|+++ | .+.+++|+| |++|+.+++++++++||+|++..|.|+++...+. ..|.++..
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~ 139 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEG---VVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVS 139 (392)
Confidence 455666666654 3 456899999 9999999999999999999999999999887664 25666666
Q ss_pred eCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------c
Q 013079 173 VDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------P 235 (450)
Q Consensus 173 v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~ 235 (450)
++. .|++++++++.++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+. .
T Consensus 140 ~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 219 (392)
T 3b1d_A 140 NSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF 219 (392)
Confidence 554 26788888883268899999999999999975 889999999999999999999554321 1
Q ss_pred c---C--CCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHH
Q 013079 236 A---R--LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKE 308 (450)
Q Consensus 236 ~---~--~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~ 308 (450)
. . .+.++++.|+||.+|++|.|+ ||+++++ ++++.+............+.+.+.++..++.. .+++.+..++
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 298 (392)
T 3b1d_A 220 NTVSPDFKDFALVLSSATKTFNIAGTKN-SYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAV 298 (392)
Confidence 1 1 346789999999999899998 9988764 58887766544221112233444434333332 2334455556
Q ss_pred HHHHHHHHHHHHHh
Q 013079 309 HCHRALIFARRMKK 322 (450)
Q Consensus 309 ~~~~~~~l~~~L~~ 322 (450)
+.++++.+.+.|++
T Consensus 299 ~~~~~~~l~~~l~~ 312 (392)
T 3b1d_A 299 LEENIQFAVEYFAQ 312 (392)
Confidence 67788888888876
No 168
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.92 E-value=7.6e-24 Score=215.16 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=193.6
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---------cCC-CEEEEeCCCchhHHHHHHHhCCC--
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR-- 164 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~-- 164 (450)
..+...++++.|++++|.+.++||+| |++|+.++++.+. .+| |+||+.++.|++...........
T Consensus 116 ~~~~~~~l~~~la~~~g~~~v~~~~s---GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~ 192 (439)
T 2oat_A 116 YNNVLGEYEEYITKLFNYHKVLPMNT---GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT 192 (439)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChh
Confidence 45778999999999999999999999 9999999998764 356 89999999998754322111100
Q ss_pred ------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079 165 ------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS 234 (450)
Q Consensus 165 ------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~ 234 (450)
.....+..++.+|+++|++++.++++++|++++++|++|.+. ++++|.++|++||+++|+||+|.++...
T Consensus 193 ~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~ 272 (439)
T 2oat_A 193 SYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 272 (439)
T ss_dssp HHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred cccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 011356677778999999999436789999998888999876 7999999999999999999999655321
Q ss_pred -------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079 235 -------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 306 (450)
Q Consensus 235 -------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 306 (450)
......|++ |++|.+++ | +++ |++++++++++.+..... ..+..++.+.+.++..++..++. ....
T Consensus 273 g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~ 346 (439)
T 2oat_A 273 GRWLAVDYENVRPDIV--LLGKALSG-GLYPV-SAVLCDDDIMLTIKPGEH-GSTYGGNPLGCRVAIAALEVLEE-ENLA 346 (439)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHH
T ss_pred CcchhHHHhCCCCcEE--EecccccC-CCCCe-EEEEECHHHHhccCCCCc-ccCCCcCHHHHHHHHHHHHHHhh-hhHH
Confidence 112246876 68899995 7 787 999999888766643211 11223333333333223222211 1244
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccc
Q 013079 307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVS 384 (450)
Q Consensus 307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs 384 (450)
++..++++++.+.|++++..+.. ...+.|.++++.++.. .....+.+.|... | +.+.
T Consensus 347 ~~~~~~~~~l~~~L~~l~~~~~~-----------------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~---G-v~v~ 405 (439)
T 2oat_A 347 ENADKLGIILRNELMKLPSDVVT-----------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRDN---G-LLAK 405 (439)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTEE-----------------EEEEETTEEEEEECCCSSCCHHHHHHHHHHT---T-EECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcE-----------------EEEeeeeEEEEEEecCccHHHHHHHHHHHHC---C-eEEe
Confidence 56677888888888775321100 0114678999999742 1245677766542 3 3322
Q ss_pred cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.+ .++.|||+++ ...+++.++.+.++|.++
T Consensus 406 ~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 406 PT---------------------------HGDIIRFAPP-LVIKEDELRESIEIINKT 435 (439)
T ss_dssp BS---------------------------SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred cC---------------------------CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence 11 1478999998 766677777776666654
No 169
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=217.31 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc-----CC---CEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079 101 VLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNI 168 (450)
Q Consensus 101 ~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~-----~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~ 168 (450)
.+++++.+++++|.+ .+++|+| |++|+.++++++++ +| |+|+++.+.|.++...+. ..|.
T Consensus 109 ~~~~~~~la~~~g~~~~~~~~~~~~g---gt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~ 180 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGCGTTTSG---GTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGM 180 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCCEEEESS---HHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCC
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEcCc---HHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCC
Confidence 456777788888876 5899999 99999999998764 46 899999999999988875 3688
Q ss_pred eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-----------
Q 013079 169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL----------- 231 (450)
Q Consensus 169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~----------- 231 (450)
++++++.+ |+++|++++ ++++++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+
T Consensus 181 ~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 181 KLRHVELDPTTYQVDLGKVKKFI-NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp EEEEECBCTTTCSBCTTTTGGGC-CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred eEEEEecCcccCcCCHHHHHHHH-hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhccc
Confidence 88888754 588999999 788999999999999999999999999999999999999998522
Q ss_pred ---CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhh-------hccCCCch--HHHHHHHHc-
Q 013079 232 ---VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGAL-------MLLGPTMN--PKVAFELSE- 297 (450)
Q Consensus 232 ---~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~-------~~~g~~~~--~~~a~~~~~- 297 (450)
.++....|+|+++.|+||+++++ .++ |+++.+++.+....... ..+. ...+.... ..+++.++.
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~ 337 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGFAP-KGS-SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVN 337 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTCCC-SSC-EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHH
T ss_pred CCccccccCCCCcEEEECchhhcCCC-CCc-eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHH
Confidence 13333458999999999997432 335 88777655443321110 1000 00011111 222222222
Q ss_pred -cCCcHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079 298 -RIPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 374 (450)
Q Consensus 298 -~~~~l~~~~~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~ 374 (450)
....+.+..++..++++++.+.|++. ++.+..+. .+++++|..++.+ ...+.+.|..
T Consensus 338 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~~~L~~ 397 (497)
T 3mc6_A 338 MGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------------RYSVISFSSKTLN-IHELSDRLSK 397 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------------CSSEEEEECTTTT-HHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------CeeEEEEeCCCCC-HHHHHHHHHh
Confidence 22335566777888999999999994 45554332 3558888876432 5667777765
Q ss_pred cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC--CCCCHHHHHHHHHHHHHHhhhcC
Q 013079 375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQDSG 446 (450)
Q Consensus 375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g--~~~~~~~~i~~l~~al~~~~~~~ 446 (450)
. | +.++.+.. +..+|+++. ..++.+++++.|.+++.++.+.+
T Consensus 398 ~---G-i~v~~~~~--------------------------~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~~ 441 (497)
T 3mc6_A 398 K---G-WHFNALQK--------------------------PVALHMAFTRLSAHVVDEICDILRTTVQELKSES 441 (497)
T ss_dssp T---T-CBCEECCS--------------------------SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC-
T ss_pred C---C-EEEecCCC--------------------------CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 2 3 33332211 235788876 14888999999999988876543
No 170
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=1.2e-22 Score=205.24 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=159.5
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 176 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~- 176 (450)
.+...++++.||++++.+.+++|+| |++|+++++.++. +||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~ 121 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCN---ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDP 121 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESC---HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCC
Confidence 4778999999999999999999999 9999999999875 78999999999999988765 368888888754
Q ss_pred -----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC
Q 013079 177 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS 248 (450)
Q Consensus 177 -----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s 248 (450)
|+++|++++ ++++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+ ++.++...++ .|+++.|+|
T Consensus 122 ~~~~~d~~~l~~~i-~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~s 197 (424)
T 2po3_A 122 DTGNLDPDQVAAAV-TPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFH 197 (424)
T ss_dssp TTSSBCHHHHGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CcCCcCHHHHHHhh-CcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCC
Confidence 899999999 7789999974 489999999999999999999999999995 4543322222 589999998
Q ss_pred --CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079 249 --KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 317 (450)
Q Consensus 249 --K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 317 (450)
|.+++ .++ |+++.+ +++++.+......... ..| ..+.+..+..++...+.+....++..++++++.
T Consensus 198 k~K~l~~--~~~-G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~ 274 (424)
T 2po3_A 198 ATKAVNA--FEG-GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYR 274 (424)
T ss_dssp TTSSSCC--SSC-EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccC--CCC-eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654 565 999888 7888888765442110 011 123444444444334445555556667777777
Q ss_pred HHHHhC
Q 013079 318 RRMKKL 323 (450)
Q Consensus 318 ~~L~~~ 323 (450)
+.|+++
T Consensus 275 ~~L~~~ 280 (424)
T 2po3_A 275 EHLADL 280 (424)
T ss_dssp HHTCSC
T ss_pred HHhccC
Confidence 888765
No 171
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.92 E-value=8e-23 Score=207.46 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=207.3
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh---------ccCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNI 168 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l---------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 168 (450)
.+...++++.||+++|.+.+++++| |++|+++++.++ +++||+|+++.++|+++...+. ..|.
T Consensus 61 ~~~~~~l~~~la~~~g~~~~i~~~s---Gt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~ 132 (437)
T 3bb8_A 61 GRFNDAFEKKLGEYLGVPYVLTTTS---GSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTI-----QNGL 132 (437)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHH-----HTTC
T ss_pred ChHHHHHHHHHHHHHCCCcEEEeCC---HHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHH-----HcCC
Confidence 4688999999999999999999999 999999999988 7889999999999999988875 2688
Q ss_pred eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--
Q 013079 169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG-- 239 (450)
Q Consensus 169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g-- 239 (450)
++.+++.+ |+++|++++ +++|++|++++ ++|...|+++|.++|+++|+++|+|++|. +...+...++
T Consensus 133 ~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~ 208 (437)
T 3bb8_A 133 IPVFVDVDIPTYNVNASLIEAAV-SDKTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTF 208 (437)
T ss_dssp EEEECCEETTTTEECGGGHHHHC-CTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSS
T ss_pred EEEEEeccCccCCcCHHHHHHhc-CCCCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCeecccc
Confidence 88887754 789999999 78899999874 35666999999999999999999999994 3323333345
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHH-HHHHhhhhhh---------------------------------ccCC
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNS-MMDLHQGALM---------------------------------LLGP 285 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-l~~~~~~~~~---------------------------------~~g~ 285 (450)
.|+++.|++|..+.+|.+ ||+++.+++.+.. +...+..... ..|.
T Consensus 209 ~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (437)
T 3bb8_A 209 GDIGTVSFYPAKHITMGE-GGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGY 287 (437)
T ss_dssp SSEEEEECSTTSSSCCSS-CEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCC
T ss_pred cCEEEEECcCCcCCCCCC-eEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCc
Confidence 789999988777777777 4999887554433 3322210000 0111
Q ss_pred --CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCc-CcEEEEEeC-
Q 013079 286 --TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGF-GGLLCLDME- 360 (450)
Q Consensus 286 --~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~-g~~~~~~l~- 360 (450)
.+....+.+.+..++.+...+++..++++++.+.|++++ ..+ .|..+.... .+. ..++.|..+
T Consensus 288 ~~~~~~~~aa~~l~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~ 355 (437)
T 3bb8_A 288 NLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFIE-LPEATENSD-----------PSWFGFPITLKEDS 355 (437)
T ss_dssp BCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTTTEE-CCCCCTTEE-----------CCCSSEEEEECGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-cCCCCCCCc-----------eeeEEEEEEECCcC
Confidence 122333333333344555666667788888999998873 333 332110000 000 113334432
Q ss_pred CHHHHHHHHHHhhcccccccccccccccccccccccccc-----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079 361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST-----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 435 (450)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~-----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 435 (450)
+. ....+.+.|... | |.++.++...+...|.... ...++...... .+.|||+++ ...++++++.+
T Consensus 356 ~~-~~~~l~~~L~~~---G-I~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~lrl~~~-~~~t~~di~~i 425 (437)
T 3bb8_A 356 GV-SRIDLVKFLDEA---K-VGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIM----NQTFWIGIY-PGLTHDHLDYV 425 (437)
T ss_dssp SS-CHHHHHHHHHHT---T-BCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHH----HHEEEECCS-TTCCHHHHHHH
T ss_pred cC-cHHHHHHHHHHC---C-CceeccCCcccccCchhhccCccccCCCcHHHHHh----cCEEEecCC-CCCCHHHHHHH
Confidence 11 245677777653 3 6777775522211121100 12233222222 367999999 99999999999
Q ss_pred HHHHHHhh
Q 013079 436 EKALSRMQ 443 (450)
Q Consensus 436 ~~al~~~~ 443 (450)
.++|.++.
T Consensus 426 ~~~l~~~~ 433 (437)
T 3bb8_A 426 VSKFEEFF 433 (437)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998764
No 172
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.92 E-value=1.6e-23 Score=216.24 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhCCC-------eEEEecChHHHHHHHHHHHHHhccC--------CC-----EEEEeCCCchhHHHHHH
Q 013079 100 TVLNLSRQMAALEGTE-------AAYCTASDKAGMSAISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLT 159 (450)
Q Consensus 100 ~~~~l~~~iA~l~g~~-------~~~~tsg~~~gt~ai~~al~~l~~~--------gd-----~Vi~~~~~y~~~~~~~~ 159 (450)
..+++++.+++++|.+ ..++|+| |++|+.+++.++..+ |+ +|+++.+.|.++...+.
T Consensus 96 le~~~~~~la~l~g~~~~~~~~~~g~~t~g---gtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~ 172 (502)
T 3hbx_A 96 LQNRCVNMIAHLFNAPLEEAETAVGVGTVG---SSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR 172 (502)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccCCcceecCc---HHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH
Confidence 3456777899999987 3467999 999999999877654 76 89999999999888775
Q ss_pred HhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc------CCEEEEeCC
Q 013079 160 HFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNT 227 (450)
Q Consensus 160 ~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~ 227 (450)
..|+++++++.+ |+++|++++ +++|++|++++++||||.+.|+++|.++|+++ |+++|+|++
T Consensus 173 -----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A 246 (502)
T 3hbx_A 173 -----YFEVELKEVKLSEGYYVMDPQQAVDMV-DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAA 246 (502)
T ss_dssp -----HTTCEEEEECCBTTBCSCCHHHHHHHC-CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECT
T ss_pred -----HcCceeEEEecCCCcCcCCHHHHHHHH-hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECC
Confidence 368888888753 899999999 88999999999999999999999999999999 999999999
Q ss_pred CCCCC----CCc-----cCCCCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhhhhh-------ccCCCc--h
Q 013079 228 FSPLV----LSP-----ARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALM-------LLGPTM--N 288 (450)
Q Consensus 228 ~~~~~----~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~-------~~g~~~--~ 288 (450)
|+.+. ... ...++|+++.|+||+++++.. + |++ +.+++.+.........+.. ..+... .
T Consensus 247 ~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g-~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~ 324 (502)
T 3hbx_A 247 SGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG-I-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQ 324 (502)
T ss_dssp TGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-C-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHH
T ss_pred ccchhhhhhCcccccccCCCCceEEEECcccccCCCCC-e-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHH
Confidence 95332 111 123789999999999964432 5 554 5555544222111111100 001111 2
Q ss_pred HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--H
Q 013079 289 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--E 363 (450)
Q Consensus 289 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~ 363 (450)
....+.++. +.+.+.+++++..++++++.+.|++++ +++..+. ...++++|.+++. .
T Consensus 325 ~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------------~~~~~v~f~~~~~~~~ 386 (502)
T 3hbx_A 325 VIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKD------------------EGVPLVAFSLKDSSCH 386 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS------------------SSSSEEEEEESSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC------------------CCceEEEEEecCCCcC
Confidence 222223222 334566778888899999999999987 4654431 1234899998742 1
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH----HHHHHHHH
Q 013079 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR----WSQFEKAL 439 (450)
Q Consensus 364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~----i~~l~~al 439 (450)
....+.+.|... | +.++.. ..|... .....+||+++ ...+.+. +++|.+++
T Consensus 387 ~~~~l~~~L~~~---G-i~v~~~------~~p~~~--------------~~~~~lRisv~-~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 387 TEFEISDMLRRY---G-WIVPAY------TMPPNA--------------QHITVLRVVIR-EDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp CHHHHHHHHHTT---T-CBCCEE------ECCTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC---C-cEEeec------cCCccc--------------CCceEEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 234677777652 3 333211 111110 01367999999 6554444 45555555
Q ss_pred HHhhhcC
Q 013079 440 SRMQDSG 446 (450)
Q Consensus 440 ~~~~~~~ 446 (450)
+.+++.+
T Consensus 442 ~~l~~~~ 448 (502)
T 3hbx_A 442 RELDELP 448 (502)
T ss_dssp HHHHTCC
T ss_pred HHHHhCc
Confidence 5554433
No 173
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=7.3e-24 Score=208.93 Aligned_cols=291 Identities=15% Similarity=0.075 Sum_probs=192.2
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCE--EEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.++..+++++.+|+++|.+..++++| |++|+.++++.++.+||+ |+++.+.|........ ... ..|.++..++
T Consensus 46 ~~~~~~~l~~~la~~~~~~~~i~~~~---g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~-~~~-~~g~~~~~v~ 120 (359)
T 3pj0_A 46 NGAVIEDFETKIAKILGKQSAVFFPS---GTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDG-LKE-LQQITPLLLG 120 (359)
T ss_dssp BSHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HHH-HHCCEEEECS
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcch-HHH-hcCceEEecC
Confidence 46789999999999999988888999 999999999998888886 4455555443321100 000 2477888877
Q ss_pred CC----CHHHHHHhhhcCCceEEEEecCCCCc-ccccCHHH---HHHHHHhcCCEEEEeCCCCCC-----CCCccC--CC
Q 013079 175 IS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVANIPE---LSRLAHDKGVTVVVDNTFSPL-----VLSPAR--LG 239 (450)
Q Consensus 175 ~~----d~~~l~~ai~~~~t~lv~i~~~~Npt-G~v~~l~~---I~~la~~~gi~livD~~~~~~-----~~~~~~--~g 239 (450)
.+ |+++|+++ .+++++|++++|+||+ |.+.++++ |+++|+++|+++|+|++|... ...+.. .+
T Consensus 121 ~~~~~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 198 (359)
T 3pj0_A 121 TANQLLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICAL 198 (359)
T ss_dssp CTTSCCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTT
T ss_pred CcCCCcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhcc
Confidence 54 89999886 5789999999999998 68877555 599999999999999987322 112221 26
Q ss_pred CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 319 (450)
Q Consensus 240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 319 (450)
.|+++.|+||++++++ ||+++.++++++.+...+.... .........++... ..++...++++++.++++++.+.
T Consensus 199 ~d~~~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~a~~-~~l~~~~~~~~~~~~~~~~l~~~ 273 (359)
T 3pj0_A 199 FDSVYVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYG-GDLISLYPYILSAD-YYFEKRIGKMAEYFEAAKGLAER 273 (359)
T ss_dssp CSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTT-CCCSCCHHHHHHHH-HHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhC-CCcchhHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 7899999999998764 5888999999988876543110 01111222222111 12222224556677888899999
Q ss_pred HHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccccccccc
Q 013079 320 MKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 395 (450)
Q Consensus 320 L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~ 395 (450)
|++++ .++. .|. .++++++.++. ......+.+.|... | +.+..|.....
T Consensus 274 L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---G-V~v~~g~~~~~---- 326 (359)
T 3pj0_A 274 FNSCSGVKTVPEVP-------------------VSNMFHVYFENSADEIGAILTKIQDET---G-VGISGYLQEKS---- 326 (359)
T ss_dssp HHTSTTEEEESSSC-------------------SSSEEEEEESSCHHHHHHHHHHHHHHH---C-EECCSCCEEEE----
T ss_pred HhhCCCceeeccCC-------------------cceEEEEEecCccchhHHHHHHHHHhc---C-cEecCCccccC----
Confidence 99874 4553 232 45678888873 22356677777643 3 55555532110
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079 396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 444 (450)
...+.+|++++ ........+++.++++++.+
T Consensus 327 -----------------~~~~~~r~~i~-~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 327 -----------------ADVCAFEVSVG-DAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp -----------------TTEEEEEEECC-TTGGGSCHHHHHHHHHHHHH
T ss_pred -----------------CCceEEEEEec-CccccCCHHHHHHHHHHHHh
Confidence 01367999999 75544445556666665543
No 174
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=4.7e-23 Score=207.61 Aligned_cols=317 Identities=15% Similarity=0.143 Sum_probs=185.7
Q ss_pred HHHHHhhcCCC--CCCCCCccccCCCChhHH-HHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079 74 ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAART 149 (450)
Q Consensus 74 ~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~-~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~ 149 (450)
+++.+.+...+ ++|...|..+....+..+ .+++.+++++|.+.. ++++| |++|+..++.+++++||+|+++.+
T Consensus 50 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~---Gs~a~~~al~~~~~~gd~Vi~~~~ 126 (425)
T 3ecd_A 50 DAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHS---GAQANGAVMLALAKPGDTVLGMSL 126 (425)
T ss_dssp HHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCc---hHHHHHHHHHHccCCCCEEEEccc
Confidence 55555554333 334333333332223334 455889999999887 55999 999999999999999999999999
Q ss_pred CchhHHHHHHHh-CCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEE
Q 013079 150 LYGGTHALLTHF-FPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 222 (450)
Q Consensus 150 ~y~~~~~~~~~~-~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~l 222 (450)
+|++........ ... .++.+..++.+ |+++|++++..+++++|++++|+|| ...++++|.++|+++|+++
T Consensus 127 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~l 203 (425)
T 3ecd_A 127 DAGGHLTHGAKPALSG-KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKL 203 (425)
T ss_dssp -------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEE
T ss_pred ccccceecchhhhhcc-cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEE
Confidence 998832111111 111 23455566544 8999999994368999999999885 6789999999999999999
Q ss_pred EEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHH-H-HH
Q 013079 223 VVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-V-AF 293 (450)
Q Consensus 223 ivD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~-a~ 293 (450)
|+|++| .++. ..+.. .+|+++.|+||++++ .+. |+++.+ +.+.+.+....... ..+....+. . +.
T Consensus 204 i~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g--~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~ 277 (425)
T 3ecd_A 204 MVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRG--PRG-GFVLTNDEEIAKKINSAVFPG--LQGGPLMHVIAGKA 277 (425)
T ss_dssp EEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEESCHHHHHHHHHHHC-------CCCHHHHHHHH
T ss_pred EEECcChHhhhhcccccCchh-cCcEEEecCCcccCC--CCc-EEEEeCCHHHHHHHHhhhCcc--ccCCccHHHHHHHH
Confidence 999995 2221 12222 378999999999953 454 998887 56766665543311 122222222 2 22
Q ss_pred HHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHH
Q 013079 294 ELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMN 370 (450)
Q Consensus 294 ~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~ 370 (450)
.+.. .. +.+....++..++++++.+.|++.+..+..|. +.+.++++.++. ......+..
T Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 339 (425)
T 3ecd_A 278 VAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------TDNHLLLVDLRPKGLKGAQVEQ 339 (425)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------CCceEEEEEeCCCCCCHHHHHH
Confidence 2221 22 34556677788889999999998776654332 245688888862 112344555
Q ss_pred HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHHh
Q 013079 371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSRM 442 (450)
Q Consensus 371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~~ 442 (450)
.|... | +.+..++. |.... .....+.|||+++ ..+ +++.++.+.++|.++
T Consensus 340 ~l~~~---g-i~v~~~~~------p~~~~-----------~~~~~~~iRi~~~-~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 340 ALERA---G-ITCNKNGI------PFDPE-----------KPTITSGIRLGTP-AGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp HHHHT---T-EECEECCC------TTCSS-----------CTTTCSEEEEESH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHc---C-CEeccccc------CCCCC-----------CCCCccceeccch-hheeccCCHHHHHHHHHHHHHH
Confidence 55432 3 45443321 11000 0111467999965 422 256666666655544
No 175
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.92 E-value=2.1e-22 Score=201.06 Aligned_cols=303 Identities=16% Similarity=0.113 Sum_probs=202.9
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-------ccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 169 (450)
..+..+++++.+|+++|.+.++++++ |++|+++++.++ +++||+|+++.++|+++...+. ..|.+
T Consensus 32 ~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~ 103 (390)
T 3b8x_A 32 MGEYVKQYETQFAKTFGSKYAVMVSS---GSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLR 103 (390)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCE
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECC---HHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCE
Confidence 36789999999999999999999999 999999999998 7889999999999999988775 26888
Q ss_pred EEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--
Q 013079 170 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA-- 240 (450)
Q Consensus 170 v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~-- 240 (450)
+.+++.+ |+++|++++ ++++++|+++ |++|...|+++|.++|+++|+++|+|++|+ +...+...+|.
T Consensus 104 ~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~ 179 (390)
T 3b8x_A 104 VKFVDIDINTLNIDIESLKEAV-TDSTKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFG 179 (390)
T ss_dssp EEEECBCTTTCSBCHHHHHHHC-CTTEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSS
T ss_pred EEEEecCccccCcCHHHHHHHh-CcCCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCccccccc
Confidence 8888764 899999999 7789999986 467888999999999999999999999994 33334444454
Q ss_pred eEEEeCC--CCccccCccceEEEEEcCH-HHHHHHHHHhhhhh-h------------------------ccCCC--chHH
Q 013079 241 DVVVHSI--SKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL-M------------------------LLGPT--MNPK 290 (450)
Q Consensus 241 di~~~S~--sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~-~------------------------~~g~~--~~~~ 290 (450)
|+.+.|+ +|.+++ | .||+++.++ ++.+.+...+.+.. . ..|.. +...
T Consensus 180 ~~~~~s~~~~k~~~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 256 (390)
T 3b8x_A 180 LMGTFSSFYSNHIAT-M--EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEM 256 (390)
T ss_dssp SEEEEECCTTSSSCS-S--SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHH
T ss_pred ceEEEEccCCCCCcc-C--CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHH
Confidence 5555432 333432 2 258888765 67766665443110 0 01211 3334
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHH
Q 013079 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANR 367 (450)
Q Consensus 291 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~ 367 (450)
.++..+..++.+++..++..++++++.+.|++++. .+..+. .. .....+++.++. ......
T Consensus 257 ~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~---------------~~~~~~~i~~~~~~~~~~~~ 320 (390)
T 3b8x_A 257 SGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GE---------------SSWFGFSFIIKKDSGVIRKQ 320 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SB---------------CCCCEEEEEECTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CC---------------cccEEEEEEecCcCcccHHH
Confidence 44443334566667777788889999999988743 433221 00 112246667762 112456
Q ss_pred HHHHhhcccccccccccc---cccccc-cccc-cccc-CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079 368 LMNYLQNYAQFGFMAVSL---GYYETL-MSCS-GSST-SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439 (450)
Q Consensus 368 ~~~~l~~~~~~g~i~vs~---G~~~s~-~~~~-~~~~-~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 439 (450)
+.+.|... | |.++. |+.|+. -... .... ...++..+... .+.||||++ ...++++++.+.++|
T Consensus 321 l~~~L~~~---g-I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~-~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 321 LVENLNSA---G-IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLD----KNGLFVGNH-QIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHT---T-BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHH----HHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred HHHHHHHC---C-CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHh----cCEEEeeCC-CCCCHHHHHHHHHhh
Confidence 77777643 3 56665 333332 1100 0000 12333333222 467999999 999999999888775
No 176
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.91 E-value=1.7e-23 Score=211.72 Aligned_cols=308 Identities=11% Similarity=0.113 Sum_probs=195.4
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc---c----CCCEE
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC---S----SGGHV 144 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~---~----~gd~V 144 (450)
+++.+.++....++ ++++..+...++++.++++++ .+.++||+| |++|++++++.+. + +||+|
T Consensus 66 ~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gtea~~~ai~~~~~~~~~~g~~~~~v 137 (429)
T 1s0a_A 66 AAMKSQIDAMSHVM-----FGGITHAPAIELCRKLVAMTPQPLECVFLADS---GSVAVEVAMKMALQYWQAKGEARQRF 137 (429)
T ss_dssp HHHHHHHHHCSCCC-----CSSEECHHHHHHHHHHHHHSCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred HHHHHHHHhccccc-----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCC---HHHHHHHHHHHHHHHhcccCCCCCeE
Confidence 66666654332211 223446678899999999994 578999999 9999999998653 2 58999
Q ss_pred EEeCCCchhHHHHHHHhCC-----------CccCeeEEEeC---------CCCHHHHHHhhhc--CCceEEEEecC-CCC
Q 013079 145 VAARTLYGGTHALLTHFFP-----------RACNITTTFVD---------ISDHEMVNSAIVQ--GRTKVLYFESI-SNP 201 (450)
Q Consensus 145 i~~~~~y~~~~~~~~~~~~-----------~~~g~~v~~v~---------~~d~~~l~~ai~~--~~t~lv~i~~~-~Np 201 (450)
++..|.|+++......... ...++....++ ..|+++|++++.+ +++++|+++++ +||
T Consensus 138 i~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~ 217 (429)
T 1s0a_A 138 LTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGA 217 (429)
T ss_dssp EEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECT
T ss_pred EEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCC
Confidence 9999999875443211100 00123333332 1378899998832 57888888887 899
Q ss_pred cccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHH
Q 013079 202 TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLV 269 (450)
Q Consensus 202 tG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~ 269 (450)
||.+.+ +++|.++|+++|+++|+||+|.++... ......|++ |+||.+++ | .++ |+++++++++
T Consensus 218 tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~i-G~~~~~~~~~ 293 (429)
T 1s0a_A 218 GGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTL-SATLTTREVA 293 (429)
T ss_dssp TTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCC-EEEEECHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccc-eEEEeCHHHH
Confidence 998877 999999999999999999999655321 112346766 57899995 7 888 9999998888
Q ss_pred HHHHHHhh----hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHh
Q 013079 270 NSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 345 (450)
Q Consensus 270 ~~l~~~~~----~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~ 345 (450)
+.+..... ...+..++.+.+.++..++..++. ....++..++++++.+.|++++. .|.+..
T Consensus 294 ~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~----------- 358 (429)
T 1s0a_A 294 ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVAD----------- 358 (429)
T ss_dssp HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEEE-----------
T ss_pred HHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhc---CCCEEE-----------
Confidence 87754210 011122233333333333322111 13345567778888888876421 111100
Q ss_pred ccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079 346 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 425 (450)
Q Consensus 346 ~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 425 (450)
..+.|.+++++++.......+...|... | +.++.. .+.||||++ .
T Consensus 359 --~~~~g~~~~~~~~~~~~~~~l~~~l~~~---G-i~v~~~----------------------------~~~iRis~~-~ 403 (429)
T 1s0a_A 359 --VRVLGAIGVVETTHPVNMAALQKFFVEQ---G-VWIRPF----------------------------GKLIYLMPP-Y 403 (429)
T ss_dssp --EEEETTEEEEEESSCBCHHHHHHHHHHT---T-EECCCB----------------------------TTEEEECCC-T
T ss_pred --EEEeeEEEEEEECCcccHHHHHHHHHHC---C-CEEecc----------------------------CCEEEEECC-C
Confidence 0024668999987422244566666532 2 332210 267999998 7
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 013079 426 GTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 426 ~~~~~~i~~l~~al~~~~ 443 (450)
..+++.++.+.++|.++.
T Consensus 404 ~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp TCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 777777888877777653
No 177
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.91 E-value=1.1e-23 Score=211.04 Aligned_cols=287 Identities=17% Similarity=0.138 Sum_probs=190.8
Q ss_pred HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe--eEEEeCC-----
Q 013079 104 LSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI----- 175 (450)
Q Consensus 104 l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~v~~v~~----- 175 (450)
+++.+++++|.+.. +++++ |++|+.+++.+++++||+|+++.++|+++.... .... ..|. ....++.
T Consensus 74 ar~~la~~~g~~~~~i~~~s---Gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~ 148 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHS---GSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVN-FSGKLYKVVSYGVRPDTE 148 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTS-HHHHHSEEEEECCCTTTS
T ss_pred HHHHHHHHhCCCcceEEecc---hHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHH-hcCceEEEEecCCCcccC
Confidence 34599999998876 66788 889999999999999999999999998774211 0011 1233 3344421
Q ss_pred -CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CC-C----CccCCCCeEEEeCCC
Q 013079 176 -SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-L----SPARLGADVVVHSIS 248 (450)
Q Consensus 176 -~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~-~----~~~~~g~di~~~S~s 248 (450)
.|+++|++++...++++|++++|+|| .+.|+++|.++|+++|+++|+|++|+. +. . .+.. .+|+++.|+|
T Consensus 149 ~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~s 225 (407)
T 2dkj_A 149 LIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTH 225 (407)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESS
T ss_pred ccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEecc
Confidence 38999999993248999999889997 678999999999999999999999843 31 1 1122 3799999999
Q ss_pred CccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079 249 KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG 324 (450)
Q Consensus 249 K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~ 324 (450)
|+++ |.++ |+++++ +++++.+......+. ..+...... ++..++.. ...+....+++.++++++.+.|++++
T Consensus 226 K~l~--g~~~-G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 301 (407)
T 2dkj_A 226 KTLR--GPRG-GLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG 301 (407)
T ss_dssp GGGC--CCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCC--CCCc-eEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9775 4555 999988 788888876554221 122222222 22222222 23456677778889999999999886
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCC
Q 013079 325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 403 (450)
Q Consensus 325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~ 403 (450)
.++..+. +.|+++++.++.. .....+.+.|.. .| +.+..|+... ....
T Consensus 302 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~~~~~~-------~~~~-- 350 (407)
T 2dkj_A 302 YRIVTGG------------------TDNHLFLVDLRPKGLTGKEAEERLDA---VG-ITVNKNAIPF-------DPKP-- 350 (407)
T ss_dssp CEEGGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---TT-EECEECCCTT-------CSSC--
T ss_pred ceeecCC------------------CCceEEEEECcccCCCHHHHHHHHHH---cC-ceecCCcCcc-------cccc--
Confidence 6554321 2467899998731 124566666654 23 5555553210 0000
Q ss_pred CHHHHHhcCCCCCeEEEEeC-------CCCCHHHHHHHHHHHHHH
Q 013079 404 NAEEKALAGISAGLVRMSVG-------YLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 404 ~~~~~~~~g~~~~~iRiS~g-------~~~~~~~~i~~l~~al~~ 441 (450)
...++.+|||++ ..++.+.+++.|.+++.+
T Consensus 351 --------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 --------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp --------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred --------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 011468999983 146677777777777765
No 178
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=3.8e-23 Score=207.86 Aligned_cols=216 Identities=17% Similarity=0.141 Sum_probs=145.5
Q ss_pred HHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-----C
Q 013079 103 NLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----S 176 (450)
Q Consensus 103 ~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-----~ 176 (450)
.+++.+++++|.+.. +++++ |++|+.+++.+++++||+|+++.++|+++..........-.++.+..++. .
T Consensus 75 ~~~~~la~~~g~~~~~i~~~s---Gt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNS---GSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRI 151 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSC
T ss_pred HHHHHHHHHhCCCCcceEecc---HHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCc
Confidence 456689999998876 77888 99999999999999999999999999876542211100002444555544 3
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCc
Q 013079 177 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKF 250 (450)
Q Consensus 177 d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~ 250 (450)
|+++|++++..+++++|++++++| |.+.|+++|.++|+++|+++|+|++| .+.. ..+.. +.|+++.|+||+
T Consensus 152 d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~ 228 (417)
T 3n0l_A 152 DYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKT 228 (417)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTT
T ss_pred CHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccc
Confidence 899999999336899999888876 88999999999999999999999996 2221 11111 479999999999
Q ss_pred cccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013079 251 ISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLK 326 (450)
Q Consensus 251 ~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~ 326 (450)
++ |.+. |+++++ +++.+.+........ ..++.....++.. ++.. . +.+....++..++++++.+.|++.+..
T Consensus 229 l~--g~~~-G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 304 (417)
T 3n0l_A 229 LR--GPRG-GIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFK 304 (417)
T ss_dssp TC--SCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cC--CCCe-eEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 84 4454 999887 788888766544221 1122222222222 2222 2 345666677788889999999886665
Q ss_pred ee
Q 013079 327 VL 328 (450)
Q Consensus 327 v~ 328 (450)
+.
T Consensus 305 ~~ 306 (417)
T 3n0l_A 305 LV 306 (417)
T ss_dssp EG
T ss_pred ec
Confidence 43
No 179
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=2.7e-23 Score=211.85 Aligned_cols=288 Identities=13% Similarity=-0.004 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhCCC-------eEEEecChHHHHHHHHHHHHHhcc--------CC-----CEEEEeCCCchhHHHHHHH
Q 013079 101 VLNLSRQMAALEGTE-------AAYCTASDKAGMSAISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTH 160 (450)
Q Consensus 101 ~~~l~~~iA~l~g~~-------~~~~tsg~~~gt~ai~~al~~l~~--------~g-----d~Vi~~~~~y~~~~~~~~~ 160 (450)
.+++++.+|+++|.+ .+++|+| ||+|+.+++.++.. +| ++|+++. .|.++...+.
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~g---gtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~- 157 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIG---SSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR- 157 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCC---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH-
Confidence 466777789999875 2799999 99999999987753 55 5899999 9988887774
Q ss_pred hCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc------CCEEEEeCCC
Q 013079 161 FFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTF 228 (450)
Q Consensus 161 ~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~ 228 (450)
..|+++++++.+ |+++|++++ +++|++|++++|+||||.+.|+++|+++|+++ |+++|+|++|
T Consensus 158 ----~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~ 232 (452)
T 2dgk_A 158 ----YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 232 (452)
T ss_dssp ----HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred ----HcCceEEEEecCCCCCeECHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence 368899888764 899999999 88899999999999999999999999999995 9999999999
Q ss_pred CCCCC---C---ccC---CCCeEEEeCCCCccccCccceEEEEEcC-HHHH-HHHHHHhhhhhh-------ccCCCc--h
Q 013079 229 SPLVL---S---PAR---LGADVVVHSISKFISGGADIIAGAVCGP-ANLV-NSMMDLHQGALM-------LLGPTM--N 288 (450)
Q Consensus 229 ~~~~~---~---~~~---~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~-~~l~~~~~~~~~-------~~g~~~--~ 288 (450)
+.+.. . +.. .++|+++.|+||++. .+.++ |+++.+ +.++ +.+. ....+.. ..+... .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~-~~~~~-G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 309 (452)
T 2dgk_A 233 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL-APLGC-GWVIWRDEEALPQELV-FNVDYLGGQIGTFAINFSRPAGQ 309 (452)
T ss_dssp GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSC-EEEEESSGGGSCGGGC-EEECCTTCCEEECCSCCSCBCHH
T ss_pred HHHHHHhhCccchhhcCCCCCcEEEECcccccC-CCCCe-EEEEEcCHHHHHHHhc-cCccccCCCCCCcccCCCChhHH
Confidence 54321 1 111 278999999999764 34456 877664 4333 3321 1111100 011111 1
Q ss_pred HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--
Q 013079 289 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-- 363 (450)
Q Consensus 289 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-- 363 (450)
....+.++. +.+.+.++.++..++++++.+.|++++ +++..|+.+. ...++++|.+++..
T Consensus 310 ~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~ 374 (452)
T 2dgk_A 310 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGEDP 374 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTT---------------TBSSEEEEEECTTCCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCC---------------CCeEEEEEEecCcccc
Confidence 222222222 234466677788899999999999886 4655443110 13458999987421
Q ss_pred --HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079 364 --KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441 (450)
Q Consensus 364 --~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 441 (450)
....+.+.|... | +.++.. ..+... -..+.+|||++ ...+++.++.|.++|.+
T Consensus 375 ~~~~~~l~~~L~~~---G-i~v~~~------~~~~~~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~ 429 (452)
T 2dgk_A 375 GYTLYDLSERLRLR---G-WQVPAF------TLGGEA--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKA 429 (452)
T ss_dssp SCCHHHHHHHHHHT---T-CBCCEE------ECSTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhc---C-Ceeeee------eCCccc--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHH
Confidence 135677777642 2 332211 001100 01458999999 75555555555544443
No 180
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.91 E-value=8.3e-23 Score=205.00 Aligned_cols=222 Identities=13% Similarity=0.122 Sum_probs=157.1
Q ss_pred CccccCCCChhHHHHHHHHHHHh-C---C----C--eEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHH
Q 013079 90 FFIYSRHFNPTVLNLSRQMAALE-G---T----E--AAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHAL 157 (450)
Q Consensus 90 ~~~y~r~~~~~~~~l~~~iA~l~-g---~----~--~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~ 157 (450)
.+.|+. .....+||+.+|+++ + . + .+++|+| |++|+.+++..++. + |+|++++|.|+++...
T Consensus 65 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G---~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~ 138 (405)
T 3k7y_A 65 EKPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIG---GTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM 138 (405)
T ss_dssp CCCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEH---HHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH
T ss_pred CCCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCc---hHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH
Confidence 355653 223456777777765 2 1 3 3589999 99999999998877 8 9999999999999988
Q ss_pred HHHhCCCccCeeEEEeCC-C------CHHHHHHhhhc-CCceEEEEecC-CCCcccccC---HHHHHHHHHhcCCEEEEe
Q 013079 158 LTHFFPRACNITTTFVDI-S------DHEMVNSAIVQ-GRTKVLYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 158 ~~~~~~~~~g~~v~~v~~-~------d~~~l~~ai~~-~~t~lv~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD 225 (450)
+. ..|.++..++. + |++++++++.+ +++++|+++++ |||||.+.+ +++|+++|+++++++|+|
T Consensus 139 ~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~D 213 (405)
T 3k7y_A 139 IE-----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFD 213 (405)
T ss_dssp HH-----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HH-----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEe
Confidence 75 36888887764 1 88999998833 46788888765 899999976 668889999999999999
Q ss_pred CCCCCCCCCc-------c----CC-CCeEEEeCCCCccccCccceEEEEE---cCHHHHHHHHH----HhhhhhhccCCC
Q 013079 226 NTFSPLVLSP-------A----RL-GADVVVHSISKFISGGADIIAGAVC---GPANLVNSMMD----LHQGALMLLGPT 286 (450)
Q Consensus 226 ~~~~~~~~~~-------~----~~-g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~~----~~~~~~~~~g~~ 286 (450)
++|..+.+.. . .. ...+++.|+||.|+++|+|+ ||++ .++++++.+.. ... ......+.
T Consensus 214 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 291 (405)
T 3k7y_A 214 IAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GALHIVCKNQEEKKIVFNNLCFIVR-KFYSSPVI 291 (405)
T ss_dssp ESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EEEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCH
T ss_pred cCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHh-cccCCCcH
Confidence 9997665431 0 11 46799999999999999999 9974 35666655532 211 11112223
Q ss_pred chHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHH----hCC
Q 013079 287 MNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMK----KLG 324 (450)
Q Consensus 287 ~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~----~~~ 324 (450)
..+.++..++.. .+++....+++.++++.+.+.|+ +++
T Consensus 292 ~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 292 HTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 333333333332 12233344567899999999998 765
No 181
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=5.6e-23 Score=207.42 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=184.3
Q ss_pred CCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHhCC------C
Q 013079 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFP------R 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~------~ 164 (450)
++..+...++++++++++|. +.++||+| |++|++++++.+.. +||+|++.+|.|++.......... .
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---g~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~ 158 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNS---GTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRS 158 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGC
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCc---hHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccc
Confidence 45567789999999999985 47899999 99999999987543 389999999999865443221110 0
Q ss_pred c---cCeeEEEeCCC---------------------CHHHHH-Hhhhc----CCceEEEEecCCCCcccccC----HHHH
Q 013079 165 A---CNITTTFVDIS---------------------DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPEL 211 (450)
Q Consensus 165 ~---~g~~v~~v~~~---------------------d~~~l~-~ai~~----~~t~lv~i~~~~NptG~v~~----l~~I 211 (450)
. ....+..++.+ |+++|+ +++.+ +++++|+++++|||||.+.+ +++|
T Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l 238 (419)
T 2eo5_A 159 IVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAEL 238 (419)
T ss_dssp SSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHH
T ss_pred ccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHH
Confidence 0 11245555443 367888 88832 46778888777788998766 9999
Q ss_pred HHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhcc
Q 013079 212 SRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLL 283 (450)
Q Consensus 212 ~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~ 283 (450)
.++|+++|+++|+||+|.++.... .....|++ |+||.+++ | +|+ ||++++++++ .+ .... ..+..
T Consensus 239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~ 311 (419)
T 2eo5_A 239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFG 311 (419)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCC
T ss_pred HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCC
Confidence 999999999999999996553211 12245665 68999995 8 998 8888888777 65 3111 11223
Q ss_pred CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CH
Q 013079 284 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 362 (450)
Q Consensus 284 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~ 362 (450)
++.+.+.++..++. .+.+..++..++++++.+.|+++ .... + +.|.++++++. ..
T Consensus 312 ~n~~~~~aa~aal~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-------------------~~g~~~~i~~~~~~ 367 (419)
T 2eo5_A 312 GNALACAIGSKVID---IVKDLLPHVNEIGKIFAEELQGL-ADDV-R-------------------GIGLAWGLEYNEKK 367 (419)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTS-SSEE-E-------------------EETTEEEEECSCHH
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-hhhe-E-------------------eeeEEEEEEEecCc
Confidence 33333433333332 23335566788888999998765 2111 1 35678999984 32
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
.... +.+.|.. .| +.++.+ + ++.||||++ ...+++.++.+.++|.++
T Consensus 368 ~~~~-~~~~l~~---~G-v~v~~~-------------------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 368 VRDR-IIGESFK---RG-LLLLPA-------------------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV 414 (419)
T ss_dssp HHHH-HHHHHHH---TT-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHHH---CC-CEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 3345 7776653 23 333322 1 368999998 766666666666666554
No 182
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.91 E-value=7.5e-24 Score=217.72 Aligned_cols=256 Identities=16% Similarity=0.138 Sum_probs=163.7
Q ss_pred cccCccccCCH-HHHHHhhcCCC--CCCCCCccccC--CCChhHHHHHHHHHHHhCCCe-----EEEecChHHHHHHHHH
Q 013079 63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSR--HFNPTVLNLSRQMAALEGTEA-----AYCTASDKAGMSAISS 132 (450)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r--~~~~~~~~l~~~iA~l~g~~~-----~~~tsg~~~gt~ai~~ 132 (450)
..+.+++.+.+ +++.+.+...+ |+|.+.| |+. ......+.+++++++++|++. .+++++ |++++.+
T Consensus 50 ~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~s---Gs~an~~ 125 (483)
T 1rv3_A 50 IASENFASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS---GSPANFA 125 (483)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECC---cHHHHHH
Confidence 34555544433 66666665555 4554322 221 112233456699999999863 255555 6688888
Q ss_pred HHHHhccCCCEEEEeCCCchhHHHHHHHhC---CCccC--eeEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 013079 133 VLMQLCSSGGHVVAARTLYGGTHALLTHFF---PRACN--ITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP 201 (450)
Q Consensus 133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~---~~~~g--~~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~Np 201 (450)
++.+++++||+|++++++|+++........ ....| +.+..++. .|+++|++++..++|++|++ +++|+
T Consensus 126 ~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~ 204 (483)
T 1rv3_A 126 VYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCY 204 (483)
T ss_dssp HHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC
T ss_pred HHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcC
Confidence 899999999999999999988754321000 00122 34444421 28999999993278999999 88999
Q ss_pred cccccCHHHHHHHHHhcCCEEEEeCCCC-CC-----CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH--------
Q 013079 202 TLAVANIPELSRLAHDKGVTVVVDNTFS-PL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-------- 267 (450)
Q Consensus 202 tG~v~~l~~I~~la~~~gi~livD~~~~-~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-------- 267 (450)
+ .+.|+++|.++|+++|+++|+|++|. ++ ...+.. ++|+++.|+||++++ .+. |+++.+++
T Consensus 205 ~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~G--prg-G~i~~~~~~~~~~~~~ 279 (483)
T 1rv3_A 205 S-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRG--CRA-GMIFYRRGVRSVDPKT 279 (483)
T ss_dssp C-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEEECSBCC-----
T ss_pred C-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCC--CCc-eEEEEcchhhhhcccc
Confidence 8 89999999999999999999999972 22 112222 689999999998853 444 99887653
Q ss_pred -------HHHHHHHHhhhhhhccCCCc-hHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079 268 -------LVNSMMDLHQGALMLLGPTM-NPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 330 (450)
Q Consensus 268 -------~~~~l~~~~~~~~~~~g~~~-~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p 330 (450)
+.+.+....... ..|+.. ...++. .++.. ...+....+++.++++++.+.|+++++++..|
T Consensus 280 g~~~~y~~~~~~~~~~~~~--~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 351 (483)
T 1rv3_A 280 GKEILYNLESLINSAVFPG--LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG 351 (483)
T ss_dssp --CCBCCHHHHHHHHHTTT--TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred CcchhhHHHHHhhhhcCCc--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence 333333221111 123222 222222 12222 23456677778999999999999887766544
No 183
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.91 E-value=4.3e-23 Score=209.40 Aligned_cols=305 Identities=13% Similarity=0.157 Sum_probs=192.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh--CC-CeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeC
Q 013079 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE--GT-EAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAAR 148 (450)
Q Consensus 74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~--g~-~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~ 148 (450)
+++.+.+... . .+.+.++..+..+++++.+++++ +. +.++||+| |++|+..+++.+ ..++++||+.+
T Consensus 66 ~a~~~~~~~~-~----~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---gsea~~~al~~~~~~~~~~~vi~~~ 137 (439)
T 3dxv_A 66 AAVSAAAANP-A----GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHS---GSDANEAAYRAIVKATGRSGVIAFA 137 (439)
T ss_dssp HHHHHHHHSC-S----CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESS---HHHHHHHHHHHHHHHHSCCEEEEET
T ss_pred HHHHHHHHhc-c----CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCC---HHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5555555432 1 23345667788999999999998 45 68999999 999999999875 34567899999
Q ss_pred CCchhHHHHHHHhCCC----------ccCeeEEEeCCC----------CHHHHHHhhh---cCCceEEEEecCCCCcccc
Q 013079 149 TLYGGTHALLTHFFPR----------ACNITTTFVDIS----------DHEMVNSAIV---QGRTKVLYFESISNPTLAV 205 (450)
Q Consensus 149 ~~y~~~~~~~~~~~~~----------~~g~~v~~v~~~----------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v 205 (450)
+.|++........... .....+..++.+ |+++|++++. .+++++|++++++|++|.+
T Consensus 138 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~ 217 (439)
T 3dxv_A 138 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLI 217 (439)
T ss_dssp TCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSB
T ss_pred CCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCc
Confidence 9997755433211000 000012334433 5899999883 4578999999999999999
Q ss_pred cC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079 206 AN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 206 ~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 274 (450)
.+ +++|.++|++||+++|+||+|+++... ......|++ |+||.+++ |+|+ |++++++++++.+..
T Consensus 218 ~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~ri-G~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 218 VPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPL-SAVIAPAEILDCASA 293 (439)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTSCSS
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Ccce-EEEEECHHHHhhhcC
Confidence 88 999999999999999999999655321 112245666 78999995 8998 999999888876654
Q ss_pred HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013079 275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYG 350 (450)
Q Consensus 275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g 350 (450)
... .... ++.+.+.++..++...+. ....++..++++++.+.|++ ++.....+ +
T Consensus 294 ~~~-~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~ 351 (439)
T 3dxv_A 294 FAM-QTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIR-------------------G 351 (439)
T ss_dssp SSC-CTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------E
T ss_pred CCc-CCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------E
Confidence 322 1122 333333333333221111 22334455555566666654 33311111 3
Q ss_pred cCcEEEEEe--------CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 013079 351 FGGLLCLDM--------ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422 (450)
Q Consensus 351 ~g~~~~~~l--------~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~ 422 (450)
.|.++++.+ +.......+.+.+... | +.+..| +...+.|||++
T Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~ 402 (439)
T 3dxv_A 352 RGLACGMELVCDRQSREPARAETAKLIYRAYQL---G-LVVYYV-------------------------GMNGNVLEFTP 402 (439)
T ss_dssp ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH---T-EECEEE-------------------------STTSCEEEECC
T ss_pred EEEEEEEEEecCccccCCCHHHHHHHHHHHHHC---C-cEEeec-------------------------CCCCCEEEEEC
Confidence 577899988 4455566777776542 3 333322 11147899998
Q ss_pred CCCCCH----HHHHHHHHHHHHHh
Q 013079 423 GYLGTL----DQRWSQFEKALSRM 442 (450)
Q Consensus 423 g~~~~~----~~~i~~l~~al~~~ 442 (450)
+ ...+ ++.++.|.+++.++
T Consensus 403 ~-~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 403 P-LTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp C-TTCCHHHHHHHHHHHHHHHHTG
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHH
Confidence 7 5444 44445555555544
No 184
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.91 E-value=1.2e-22 Score=205.05 Aligned_cols=292 Identities=13% Similarity=0.126 Sum_probs=183.0
Q ss_pred CCCChhHHHHHHHHHHHh-C-C-CeEEEecChHHHHHHHHHHHH---HhccCCCEEEEeCCCchhHHHHHHHhCCC----
Q 013079 95 RHFNPTVLNLSRQMAALE-G-T-EAAYCTASDKAGMSAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR---- 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~-g-~-~~~~~tsg~~~gt~ai~~al~---~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~---- 164 (450)
++..+...++++.||+++ + . +.+++|+| |++|++++++ .+.++| +|++.+|.|++...........
T Consensus 80 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~ 155 (426)
T 1sff_A 80 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTT---GSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPY 155 (426)
T ss_dssp TEECHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred ccCCHHHHHHHHHHHHhCCcccccEEEEeCc---hHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccc
Confidence 345678899999999999 5 4 67899999 9999999988 566666 8999999998754322122110
Q ss_pred --ccC---eeEEEeCCC----------CHHHHHHhhhc----CCceEEEEec-CCCCcccccC----HHHHHHHHHhcCC
Q 013079 165 --ACN---ITTTFVDIS----------DHEMVNSAIVQ----GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGV 220 (450)
Q Consensus 165 --~~g---~~v~~v~~~----------d~~~l~~ai~~----~~t~lv~i~~-~~NptG~v~~----l~~I~~la~~~gi 220 (450)
..+ ..+..++.+ |+++|++++.. +++++|++++ ++| ||.+.+ +++|.++|+++|+
T Consensus 156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~ 234 (426)
T 1sff_A 156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGI 234 (426)
T ss_dssp TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCC
Confidence 011 024445442 68889988832 5678888865 466 997777 9999999999999
Q ss_pred EEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079 221 TVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 293 (450)
Q Consensus 221 ~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~ 293 (450)
++|+|++|+++... .....+|++ |+||.+++ |+|+ ||+++++++++.+..... .....++.+.+.++.
T Consensus 235 ~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Glri-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~ 309 (426)
T 1sff_A 235 MLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAAL 309 (426)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHH
T ss_pred EEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCce-EEEEEcHHHHhhhccCCc-CcCCCCCHHHHHHHH
Confidence 99999999655321 111235655 78899997 9998 999998888776643211 111222323333333
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHH
Q 013079 294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKA 365 (450)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~ 365 (450)
.++..++. ....++..++++++.+.|++++.. .|... ...+.|.++++.+. .....
T Consensus 310 aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~ 373 (426)
T 1sff_A 310 EVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEK--HPEIG-------------DVRGLGAMIAIELFEDGDHNKPDAKLT 373 (426)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHT--CTTEE-------------EEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------EEEEEEEEEEEEEecCccccCCChHHH
Confidence 22222111 123445567777777777653200 01000 00024679999994 23345
Q ss_pred HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
..+.+.|... | +.+..|+. .++.||||++ ...+++.++.+.++|.++
T Consensus 374 ~~l~~~l~~~---g-i~v~~~~~-------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 374 AEIVARARDK---G-LILLSCGP-------------------------YYNVLRILVP-LTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHT---T-EECEEEST-------------------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---C-cEEecCCC-------------------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 6677777642 3 45444321 1478999998 655555555555555443
No 185
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=2.9e-23 Score=204.57 Aligned_cols=312 Identities=10% Similarity=0.015 Sum_probs=208.2
Q ss_pred cccCccccCCH-HHHHHhhcCCCCCCCCCccccCC---CChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHH
Q 013079 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVL 134 (450)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al 134 (450)
..++|++.+++ ++|.+.+...++||+|.|..+.. ....++++|+.+++++|++ .++| |+| ||+++++++
T Consensus 10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~---~T~a~n~~~ 86 (361)
T 3m5u_A 10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGG---ASLQFAMIP 86 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSH---HHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCc---HHHHHHHHH
Confidence 44667766664 88888888888999987655443 3467899999999999973 5777 999 999999999
Q ss_pred HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 013079 135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN 207 (450)
Q Consensus 135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~ 207 (450)
.+++ +||++++....+.+.. .. ....+ .|+++++++.+ +++. + + +++|++|++.+..|.||.+.|
T Consensus 87 ~~~~-~~~~~~~i~~~~~~~~-~~-~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~~tG~~~~ 158 (361)
T 3m5u_A 87 MNLA-LNGVCEYANTGVWTKK-AI-KEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNTIYGTQYQ 158 (361)
T ss_dssp HHHC-CSSCEEEEECSHHHHH-HH-HHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEETTTTEECS
T ss_pred HhcC-CCCeEEEEeCCHHHHH-HH-HHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCCCcceeCC
Confidence 9988 7886532222222222 11 22223 57778777543 3344 4 7 789999999888888899876
Q ss_pred HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH-H-------hh
Q 013079 208 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-L-------HQ 277 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~-------~~ 277 (450)
. +++ +|+++|+|.+| +...++.. ..|+++.|.||++|++| + |+++.++++.+.+.. . ..
T Consensus 159 ~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~p~~~~~~~ 227 (361)
T 3m5u_A 159 N-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISG--L-SCIFIRKDMLERSKNKQIPSMLNYLT 227 (361)
T ss_dssp S-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTT--C-EEEEEEHHHHHHHHTCCCCGGGCHHH
T ss_pred c-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCc--c-EEEEEcHHHHhhhcCCCCCceeehHH
Confidence 2 344 49999999998 55556554 36999999999999888 5 888888887766543 0 00
Q ss_pred --hhhhccCCCchHHHH---HHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhcc
Q 013079 278 --GALMLLGPTMNPKVA---FELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANK 347 (450)
Q Consensus 278 --~~~~~~g~~~~~~~a---~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~ 347 (450)
......+ +++.... ..+++.+ . .++...++..++++++.+.|++++ . ....+ +.+
T Consensus 228 ~~~~~~~~~-Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-----~~~--------- 292 (361)
T 3m5u_A 228 HAENQSLFN-TPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-----KKD--------- 292 (361)
T ss_dssp HHHTTTCSS-CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-----GGG---------
T ss_pred HhhcCCCCC-CccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-----HHH---------
Confidence 0011122 3322222 1222211 2 366667778889999999999887 3 33211 110
Q ss_pred CCCcCcEEEEEeCC---HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079 348 EYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 424 (450)
Q Consensus 348 ~~g~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~ 424 (450)
...++++|.+++ .+ ..++..|... | |.+..|.. ..+.+|+|++
T Consensus 293 --rs~~ivsf~~~~~~~~~--~~~~~~L~~~---g-I~~~~g~~-------------------------~~g~iRiS~~- 338 (361)
T 3m5u_A 293 --RSLMNVSFNIAKNKDLE--PLFVKEAEEA---G-MIGLKGHR-------------------------ILGGIRASIY- 338 (361)
T ss_dssp --BCSSEEEEEESSCTTHH--HHHHHHHHHT---T-EECCBCCT-------------------------TTCSEEEECC-
T ss_pred --cCCeEEEEECCCchhhh--HHHHHHHHHC---C-CEEecCCC-------------------------ccCeEEEEcc-
Confidence 134589999985 32 3566777642 3 45444411 0145999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc
Q 013079 425 LGTLDQRWSQFEKALSRMQDS 445 (450)
Q Consensus 425 ~~~~~~~i~~l~~al~~~~~~ 445 (450)
..++.++++.|.++|+++.+.
T Consensus 339 ~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 339 NALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999987643
No 186
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=5.5e-23 Score=206.75 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=163.4
Q ss_pred HHHHHhhcCCC--CCCCCCccccCCCC-hhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079 74 ETMRRMFAGEL--GPDRDFFIYSRHFN-PTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAART 149 (450)
Q Consensus 74 ~~~~~~~~~~~--~n~~~~~~y~r~~~-~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~ 149 (450)
+++.+.+...+ ++|.+.|..+.... ...+.+++.+++++|.+.. +++++ |++|+.+++.+++++||+|+++.+
T Consensus 48 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~s---Gs~a~~~a~~~~~~~gd~v~~~~~ 124 (420)
T 3gbx_A 48 QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHS---GSQANFAVYTALLQPGDTVLGMNL 124 (420)
T ss_dssp HHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecC---cHHHHHHHHHHhcCCCCEEEecch
Confidence 56655554444 55554443333322 3345566899999998775 55788 999999999999999999999999
Q ss_pred CchhHHHHHHHhCCCccCeeEEEeCC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 150 LYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 150 ~y~~~~~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
+|+++............++....++. .|+++|++++...++++|++++|+|| .+.|+++|.++|+++|+++|+
T Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 125 AQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFV 202 (420)
T ss_dssp C------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEE
T ss_pred hhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEE
Confidence 99874421111000001222222221 38999999994346999999989886 478999999999999999999
Q ss_pred eCCCC-CCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcCH---HHHHHHHHHhhhhhhccCCCchH-HHH-H
Q 013079 225 DNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNSMMDLHQGALMLLGPTMNP-KVA-F 293 (450)
Q Consensus 225 D~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---~~~~~l~~~~~~~~~~~g~~~~~-~~a-~ 293 (450)
|++|. ++. ..... .+|+++.|+||+++++. ||++++++ ++.+.+....... ..+..... ..+ .
T Consensus 203 De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~ 276 (420)
T 3gbx_A 203 DMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGPR---GGLILAKGGDEELYKKLNSAVFPS--AQGGPLMHVIAGKA 276 (420)
T ss_dssp ECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSCS---CEEEEESSCCHHHHHHHHHHHC------CCCCHHHHHHHH
T ss_pred ECCcchhceecccCCcccc-cCCEEEeecccCCCCCC---ceEEEEcCCcHHHHHHhhhhcCCC--CCCCcchhHHHHHH
Confidence 99972 221 11222 48999999999996332 49998886 6776665443211 12222222 222 2
Q ss_pred HHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHH
Q 013079 294 ELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMN 370 (450)
Q Consensus 294 ~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~ 370 (450)
.+.. .. +++....+++.++++++.+.|++.+..+..++ ..++++++.++. ......+..
T Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 338 (420)
T 3gbx_A 277 VALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG------------------TENHLFLLDLVDKNLTGKEADA 338 (420)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC------------------CCCeEEEEEcCCCCCCHHHHHH
Confidence 2222 22 34566677788899999999998776654321 235688888752 112344555
Q ss_pred Hhh
Q 013079 371 YLQ 373 (450)
Q Consensus 371 ~l~ 373 (450)
.|.
T Consensus 339 ~l~ 341 (420)
T 3gbx_A 339 ALG 341 (420)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 187
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.90 E-value=1e-22 Score=208.30 Aligned_cols=290 Identities=14% Similarity=0.117 Sum_probs=169.8
Q ss_pred ccCccccCCH-HHHHHhhcCCC--CCCCCCccccCCCChhHH-HHHHHHHHHhCCCe-----EEEecChHHHHHHHHHHH
Q 013079 64 ASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEA-----AYCTASDKAGMSAISSVL 134 (450)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~-~l~~~iA~l~g~~~-----~~~tsg~~~gt~ai~~al 134 (450)
.|.+++.+.+ ++|...+...| |+|.+.|.-|......++ .+++++++++|++. .++++| ||+||.+++
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~s---Gt~An~~al 137 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS---GSPANLAVY 137 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCc---hHHHHHHHH
Confidence 4666665554 77777777666 677665544433222333 45599999999875 366779 999999999
Q ss_pred HHhccCCCEEEEeCCCchhHHHHHH--H--hCCCccCe--eEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCCc
Q 013079 135 MQLCSSGGHVVAARTLYGGTHALLT--H--FFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPT 202 (450)
Q Consensus 135 ~~l~~~gd~Vi~~~~~y~~~~~~~~--~--~~~~~~g~--~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~Npt 202 (450)
.+++++||+|++.++.|.++..... . ... ..|. .+..+++ .|+++|++++...++++|+++.++||
T Consensus 138 ~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~- 215 (490)
T 2a7v_A 138 TALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS-ATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA- 215 (490)
T ss_dssp HHHCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHcCCCCEecccCccccccccchhhhcchhHH-HcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC-
Confidence 9999999999999999876432110 0 000 1232 2333322 28999999884457899998888886
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH---------
Q 013079 203 LAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------- 267 (450)
Q Consensus 203 G~v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~--------- 267 (450)
.+.|+++|.++|+++|+++|+|+++ .++ ...+.. ++|+++.|+||.++++ + ||+++++++
T Consensus 216 -~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~~~~~~~~ 290 (490)
T 2a7v_A 216 -RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp -SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEEEEETTTE
T ss_pred -CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchhccccccc
Confidence 4689999999999999999999996 221 123333 6899999999998654 2 588877653
Q ss_pred ------HHHHHHHHhhhhhhccCCCchHHHHHH-HHc-c-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchh
Q 013079 268 ------LVNSMMDLHQGALMLLGPTMNPKVAFE-LSE-R-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 338 (450)
Q Consensus 268 ------~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~ 338 (450)
+.+.++...... ...++.+...++.. ++. . .+.+.++.++..+++++|.+.|++.++++..++.
T Consensus 291 ~~~~~~l~~~i~~~~~~g-~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t------ 363 (490)
T 2a7v_A 291 REIPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT------ 363 (490)
T ss_dssp EEEECCCHHHHHHHHTTT-TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC------
T ss_pred chhhHHHHHHHHHHhccc-CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC------
Confidence 455555433211 12223333233322 211 1 1244567777889999999999998877643221
Q ss_pred HHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013079 339 ELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 386 (450)
Q Consensus 339 ~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G 386 (450)
...++++.+... .....+...|... | |.++.+
T Consensus 364 ------------~t~lv~vdl~~~g~~~~~~~~~L~~~---G-I~v~~~ 396 (490)
T 2a7v_A 364 ------------DNHLVLVDLRPKGLDGARAERVLELV---S-ITANKN 396 (490)
T ss_dssp ------------SSSEEEEECTTTTCCHHHHHHHHHHT---T-EECEEE
T ss_pred ------------CCeEEEEEeCCCCCCHHHHHHHHHhC---C-eEEecC
Confidence 123888888621 1234455555532 2 555543
No 188
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.90 E-value=1.2e-22 Score=203.48 Aligned_cols=289 Identities=9% Similarity=0.031 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 99 PTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
+..+++++.+|+++|.+ .+++ |+| |++|+++++.+++++| .++++...|............ .|.++.+++
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g---~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~--~g~~~~~v~ 151 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGG---ATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNP--FVGEPIIIT 151 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETC---HHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCT--TSCCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCc---hhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhC--CCCceEEEe
Confidence 45789999999999974 5788 999 9999999999998876 334455555322211112211 256666666
Q ss_pred CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCCcccc
Q 013079 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISG 253 (450)
Q Consensus 175 ~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~ 253 (450)
.++-......+ +++|++|++++++||||.+.|+++|.++ +|+++|+|++|...... ..+ ++|+++.|+||++++
T Consensus 152 ~~~g~~~~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~-~~~~~~di~~~s~sK~~~~ 226 (398)
T 2fyf_A 152 SDPGSAPEPQT-DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP-VDIAETDAYYFAPQKNFAS 226 (398)
T ss_dssp CCTTCCCCCCC-CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC-CCGGGCSEEEECTTSTTCS
T ss_pred cCCCCCCCccc-cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc-cCcccCcEEEEecCcccCC
Confidence 53100001125 6789999999999999999999988887 89999999998433221 122 479999999999998
Q ss_pred CccceEEEEEcCHHHHHHHHHHhh----------hh--------hhccCCC-chHH-HHHHHHccCC-c--HHHHHHHHH
Q 013079 254 GADIIAGAVCGPANLVNSMMDLHQ----------GA--------LMLLGPT-MNPK-VAFELSERIP-H--LGLRMKEHC 310 (450)
Q Consensus 254 ~g~~igG~l~~~~~~~~~l~~~~~----------~~--------~~~~g~~-~~~~-~a~~~~~~~~-~--l~~~~~~~~ 310 (450)
+|. + |+++.++++++.+...+. .. ....++. .... ++..++..+. . +....+++.
T Consensus 227 ~gg-~-g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 304 (398)
T 2fyf_A 227 DGG-L-WLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTA 304 (398)
T ss_dssp CSS-E-EEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCc-e-EEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 853 6 899999988877743210 00 0111211 1111 2222222211 1 556667788
Q ss_pred HHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079 311 HRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389 (450)
Q Consensus 311 ~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~ 389 (450)
++++++.+.|++++ .++..+. |. . ..+.+++|.++.......+.+.|... | +.++.|.
T Consensus 305 ~~~~~l~~~L~~~~g~~~~~~~----~~---------~--~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~g~-- 363 (398)
T 2fyf_A 305 DSSQRLYSWAQERPYTTPFVTD----PG---------L--RSQVVGTIDFVDDVDAGTVAKILRAN---G-IVDTEPY-- 363 (398)
T ss_dssp HHHHHHHHHHHHSTTEEESCCS----GG---------G--BCSSEEEEEECTTSCHHHHHHHHHHT---T-CBCCSCC--
T ss_pred HHHHHHHHHHHHcCCceeccCC----hh---------h--cCCcEEEEECCCCCCHHHHHHHHHHC---C-cEEecCc--
Confidence 89999999999874 4443211 11 0 12348999996322245677777642 3 4444330
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 443 (450)
. ...++.||||++ ..++++.++.+.++|.++.
T Consensus 364 -----------~----------~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 364 -----------R----------KLGRNQLRVAMF-PAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp -----------T----------TTCSSEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred -----------c----------cCCCCEEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 0 012478999999 8777888888888877653
No 189
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.90 E-value=6.6e-22 Score=201.58 Aligned_cols=218 Identities=16% Similarity=0.097 Sum_probs=155.0
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCc-hhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y-~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
..+...++++.||++++.+.+++|+| |++|+++++++++++|| +++.++| +.+...+. ..|.++.+++.
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~---gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~ 142 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQ---GRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVR 142 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESS---HHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBC
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCC---cHHHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEecc
Confidence 46778999999999999999999999 99999999999999999 7778899 66566554 25777777654
Q ss_pred C---------------CHHHHHHhhhcCCc----eEEEEecCCC-CcccccC---HHHHHHHHHhcCCEEEEeCCCCC--
Q 013079 176 S---------------DHEMVNSAIVQGRT----KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP-- 230 (450)
Q Consensus 176 ~---------------d~~~l~~ai~~~~t----~lv~i~~~~N-ptG~v~~---l~~I~~la~~~gi~livD~~~~~-- 230 (450)
+ |+++|++++ ++++ ++|++++|+| |||.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~l~~~i-~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~ 221 (456)
T 2ez2_A 143 DEAHDAGLNIAFKGDIDLKKLQKLI-DEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVEN 221 (456)
T ss_dssp GGGGCTTCCCSCTTCBCHHHHHHHH-HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHH
T ss_pred cccccccccccccCCCCHHHHHHHH-HhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 2 789999998 5555 8999999999 9999887 99999999999999999999832
Q ss_pred --------CCCCcc---------CCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhh---hccCCCchH
Q 013079 231 --------LVLSPA---------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL---MLLGPTMNP 289 (450)
Q Consensus 231 --------~~~~~~---------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~---~~~g~~~~~ 289 (450)
+.+... ....|+++.|++|+++ .| + ||+++. ++++++.+...+.... ...+.....
T Consensus 222 ~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (456)
T 2ez2_A 222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRD 298 (456)
T ss_dssp HHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHH
T ss_pred cccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhH
Confidence 322211 1236888888999876 44 4 499987 6788887765443110 011212112
Q ss_pred HHH--HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079 290 KVA--FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 330 (450)
Q Consensus 290 ~~a--~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p 330 (450)
..+ ......++ ....++..++.+++.+.|++.+..+..|
T Consensus 299 ~~a~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~p 339 (456)
T 2ez2_A 299 MEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAAGVPIVEP 339 (456)
T ss_dssp HHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCCBCSS
T ss_pred HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 222 12222221 3444555666778888888765544333
No 190
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.90 E-value=1.7e-22 Score=202.40 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=186.6
Q ss_pred HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC--eeEEEeCC-----
Q 013079 104 LSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI----- 175 (450)
Q Consensus 104 l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~v~~v~~----- 175 (450)
+++.+++++|.+.. +++++ |++|+.+++.+++++||+|+++.+.|+++...+.. . ...| .++..++.
T Consensus 74 ~r~~la~~~g~~~~~i~~~s---Gt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~ 148 (405)
T 2vi8_A 74 ARERAKQLFGAEHANVQPHS---GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETH 148 (405)
T ss_dssp HHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTC
T ss_pred HHHHHHHHhCCCceEEEecC---cHHHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccC
Confidence 45799999998876 45789 99999999999999999999999999876431100 0 0122 25555543
Q ss_pred -CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-C---CCCccCC-CCeEEEeCCC
Q 013079 176 -SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L---VLSPARL-GADVVVHSIS 248 (450)
Q Consensus 176 -~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~---~~~~~~~-g~di~~~S~s 248 (450)
.|+++|++++ ++ ++++|+++ ++|. |...++++|.++|+++|+++|+|++|+. . ...+..+ ..|+++.|+|
T Consensus 149 ~~d~~~l~~~i-~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~s 225 (405)
T 2vi8_A 149 VIDYDDVREKA-RLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTH 225 (405)
T ss_dssp SBCHHHHHHHH-HHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESS
T ss_pred CcCHHHHHHHH-HhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEecc
Confidence 2899999999 54 78988884 3443 5677899999999999999999999841 1 1111111 5789999999
Q ss_pred CccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079 249 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGL 325 (450)
Q Consensus 249 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~ 325 (450)
|+++++. ||++++++++++.+....... ...+..+.+.++. .++.. ...+....+++.++++++.+.|++++.
T Consensus 226 K~~~g~~---gG~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 301 (405)
T 2vi8_A 226 KTLRGPR---GGMILCQEQFAKQIDKAIFPG-IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301 (405)
T ss_dssp STTCCCS---CEEEEECHHHHHHHHHHHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCC---CeEEEEcHHHHHHHHhhhccc-ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998332 399999988888876654322 1222233333332 22222 234566677788999999999998866
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079 326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404 (450)
Q Consensus 326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~ 404 (450)
.+..|. +.+.++++.++.. .....+.+.|.. .| +.+..|+.+ .... .
T Consensus 302 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~g~~~------~~~~-~--- 349 (405)
T 2vi8_A 302 TLVSGG------------------TDNHLLLVDLRPQQLTGKTAEKVLDE---VG-ITVNKNTIP------YDPE-S--- 349 (405)
T ss_dssp EEGGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---HT-EECEEECCT------TCSS-C---
T ss_pred eEecCC------------------CCceEEEEEccCCCCCHHHHHHHHHH---cC-ceeccCcCc------cccC-C---
Confidence 654432 2456889998621 124456666654 23 566655421 0000 0
Q ss_pred HHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013079 405 AEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM 442 (450)
Q Consensus 405 ~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~ 442 (450)
...++.+|||++ . ..+++.++.+.++|.++
T Consensus 350 -------~~~~~~iRis~~-~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 350 -------PFVTSGIRIGTA-AVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp -------TTTCSEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCceEEeee-eeeecCCCHHHHHHHHHHHHHH
Confidence 011467999999 5 23355556665555554
No 191
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.90 E-value=6.2e-22 Score=200.30 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=123.6
Q ss_pred CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--------cCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
++..+..++++++++++++ .+.++||+| |++|+..+++.++ ..+++|++..+.|+++..........
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 144 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSG---GSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGM 144 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCTTCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCc
Confidence 4567788999999999985 478999999 9999999998876 34689999999999876433211000
Q ss_pred c--------cCe--eEEEeCCC--------CHHHHHHhhhc---CCceEEEEecCCC-CcccccC----HHHHHHHHHhc
Q 013079 165 A--------CNI--TTTFVDIS--------DHEMVNSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDK 218 (450)
Q Consensus 165 ~--------~g~--~v~~v~~~--------d~~~l~~ai~~---~~t~lv~i~~~~N-ptG~v~~----l~~I~~la~~~ 218 (450)
. ... .+.+++.+ |+++|++++.. +++++|++++++| ++|.+.+ +++|.++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 0 000 23334443 34888888832 5678888888898 9999876 99999999999
Q ss_pred CCEEEEeCCCCCCCCC-----cc---CCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHH
Q 013079 219 GVTVVVDNTFSPLVLS-----PA---RLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL 275 (450)
Q Consensus 219 gi~livD~~~~~~~~~-----~~---~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~ 275 (450)
|+++|+||+|.++... .. ....|+++ +||.+++ | +|+ |++++++++++.+...
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~ 286 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPL-AGLLAAPQVYETVMGG 286 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCC-EEEEECHHHHHHHHHT
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-Ccccc-EEEEECHHHHHHHhcc
Confidence 9999999999655321 11 22356664 7899995 8 998 8999999999888753
No 192
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.90 E-value=6.1e-22 Score=202.42 Aligned_cols=298 Identities=14% Similarity=0.105 Sum_probs=188.7
Q ss_pred ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc----CCCE---EEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079 98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITT 170 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~----~gd~---Vi~~~~~y~~~~~~~~~~~~~~~g~~v 170 (450)
.+...+++++||++++.+.++||+| |++|+++++++++. +||+ |+++.+.|..+...+. ..|.++
T Consensus 75 ~~~~~~l~~~la~~~~~~~v~~t~g---gt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~ 146 (467)
T 1ax4_A 75 SRNYYDLKDKAKELFNYDYIIPAHQ---GRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKA 146 (467)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEE
T ss_pred CccHHHHHHHHHHHcCCCcEEEcCC---cHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCce
Confidence 4678899999999999999999999 99999999999888 9998 9988655566565554 245555
Q ss_pred EEeC---------------CCCHHHHHHhhhc---CCceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079 171 TFVD---------------ISDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 171 ~~v~---------------~~d~~~l~~ai~~---~~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~ 228 (450)
..++ ..|+++|++++.. +++++|++++++||+ |.+.+ +++|+++|++||+++|+|+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~ 226 (467)
T 1ax4_A 147 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSAR 226 (467)
T ss_dssp EECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchh
Confidence 5432 1289999999932 379999999999999 77754 679999999999999999986
Q ss_pred CC------------C-CCCccCC------CCeEEEeCCCCccccCccceEEEEEcC-H-HHHHHHHHHhhhh--hhccCC
Q 013079 229 SP------------L-VLSPARL------GADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGP 285 (450)
Q Consensus 229 ~~------------~-~~~~~~~------g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~~~~l~~~~~~~--~~~~g~ 285 (450)
.. . ..++.++ .+|+++.|+||.++++ +||+++.+ + ++++.+....... ....+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 303 (467)
T 1ax4_A 227 FCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG 303 (467)
T ss_dssp HHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTT
T ss_pred hhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCC
Confidence 21 1 1222221 3688999999999875 45888776 6 7887776543311 111122
Q ss_pred CchH-HHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-----
Q 013079 286 TMNP-KVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD----- 358 (450)
Q Consensus 286 ~~~~-~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~----- 358 (450)
.... ..+.. .+..... .+++++..++++++.+.|++.+..+..|. .|.++++.
T Consensus 304 ~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 363 (467)
T 1ax4_A 304 LAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLV 363 (467)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTC
T ss_pred ccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhc
Confidence 2211 11111 2222211 23444455677889999987544443332 35578887
Q ss_pred --eCC-HHHHHHHHHHh-hcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHH
Q 013079 359 --MET-EEKANRLMNYL-QNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRW 432 (450)
Q Consensus 359 --l~~-~~~~~~~~~~l-~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i 432 (450)
++. ......+...| ... | +.++. |+.+.- ..+... . ......+.||||++ .. .+++.+
T Consensus 364 ~~~~~~~~~~~~l~~~L~~~~---g-v~v~~~g~~~~~-~~~~~g----~------~~~~~~~~iRls~~-~~~~t~e~i 427 (467)
T 1ax4_A 364 PQIPGDQFPAQAVINALYLES---G-VRAVEIGSFLLG-RDPATG----E------QKHADMEFMRLTIA-RRVYTNDHM 427 (467)
T ss_dssp TTSCGGGCHHHHHHHHHHHHH---C-EECEEESHHHHC-BCTTTC----S------BCCCSCCEEEEECC-TTSSCHHHH
T ss_pred cccccCCCCHHHHHHHHHHhc---C-ceeeecCccccc-cccccc----c------ccccccceEEEecc-cccCCHHHH
Confidence 432 11356677777 542 3 55555 432110 000000 0 00011378999999 54 555666
Q ss_pred HHHHHHHHHh
Q 013079 433 SQFEKALSRM 442 (450)
Q Consensus 433 ~~l~~al~~~ 442 (450)
+.+.++|.++
T Consensus 428 ~~~~~~l~~~ 437 (467)
T 1ax4_A 428 DYIADALIGL 437 (467)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 193
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.90 E-value=1.1e-22 Score=205.94 Aligned_cols=204 Identities=11% Similarity=0.105 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHh--------ccCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079 101 VLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 101 ~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
..+||+.||++++ .+++++|+| +++++++++.++ +++||+|+++.|.|+++...+..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G---~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~---- 174 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVG---VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY---- 174 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESH---HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCC---HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH----
Confidence 5788899998875 367999999 999999999999 89999999999999999888753
Q ss_pred ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccC--CCCeE
Q 013079 165 ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADV 242 (450)
Q Consensus 165 ~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~--~g~di 242 (450)
.|.++.... .|+++|++++ ++++++|++++||||||.+.+ + + ++ ++..+.|+++..-..+... .+.++
T Consensus 175 -~g~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i 244 (427)
T 2hox_A 175 -FDKKGYVWA-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDI 244 (427)
T ss_dssp -SCBTTEEEE-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSE
T ss_pred -cCCeeeeec-CCHHHHHHhh-cCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceE
Confidence 344433322 2677888888 678999999999999999999 3 2 33 5678899886211112222 46899
Q ss_pred EEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc------------CCcHHHHHHHH
Q 013079 243 VVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------------IPHLGLRMKEH 309 (450)
Q Consensus 243 ~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------------~~~l~~~~~~~ 309 (450)
+++|+||.+|++|+|+ ||++. ++++++.+...+... ....+.+.+.++..++.. .+++....+++
T Consensus 245 ~~~S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (427)
T 2hox_A 245 LLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYMTKN-TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKL 322 (427)
T ss_dssp EEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHH
T ss_pred EEEeChhcCCCCCceE-EEEEECCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHH
Confidence 9999999999999998 99988 588998887765521 122333444444333332 12344555677
Q ss_pred HHHHHHHHHHHHhC
Q 013079 310 CHRALIFARRMKKL 323 (450)
Q Consensus 310 ~~~~~~l~~~L~~~ 323 (450)
.++++++.+.|+++
T Consensus 323 ~~~~~~l~~~L~~~ 336 (427)
T 2hox_A 323 RERWVNITALLDQS 336 (427)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 88899999999887
No 194
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.89 E-value=5.3e-22 Score=202.00 Aligned_cols=291 Identities=10% Similarity=0.117 Sum_probs=184.9
Q ss_pred CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHH-HHHHh--
Q 013079 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHA-LLTHF-- 161 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~-~~~~~-- 161 (450)
.+..+...++++.|+++++ .+.++||+| |++|++++++.+.. +||+|++.++.|++... .+...
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~ 165 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDS---GSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGV 165 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCc---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCC
Confidence 4567788999999999984 467899999 99999999987753 67899999999987643 22210
Q ss_pred -------CCCccCeeEEEeCC--------CC--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHH
Q 013079 162 -------FPRACNITTTFVDI--------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPEL 211 (450)
Q Consensus 162 -------~~~~~g~~v~~v~~--------~d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I 211 (450)
.+...++....++. .| +++|++++.+ +++++|++++.+|+||.+.+ +++|
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l 245 (449)
T 3a8u_X 166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRN 245 (449)
T ss_dssp HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHH
Confidence 00011333333221 14 8999998832 56788888888889999888 9999
Q ss_pred HHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh-------
Q 013079 212 SRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------- 276 (450)
Q Consensus 212 ~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------- 276 (450)
.++|+++|+++|+|++|+.+.... .....|++ |+||.+++ | +|+ |+++.++++++.+....
T Consensus 246 ~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~ 321 (449)
T 3a8u_X 246 REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVE 321 (449)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCS
T ss_pred HHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCccccccc
Confidence 999999999999999996554211 11235766 67899995 6 888 88888888888776421
Q ss_pred -hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079 277 -QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 355 (450)
Q Consensus 277 -~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 355 (450)
....+..++.+.+.++..++..++. ....++..++++++.+.|++++. .|... ...+.|.++
T Consensus 322 ~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~-------------~~~~~g~~~ 384 (449)
T 3a8u_X 322 FPHGYTYSAHPVACAAGLAALCLLQK-ENLVQSVAEVAPHFEKALHGIKG---AKNVI-------------DIRNFGLAG 384 (449)
T ss_dssp SCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEE-------------EEEEETTEE
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEeeeEEEE
Confidence 0011122222222222222221111 12455667778888888876431 01100 001357799
Q ss_pred EEEeCCHH-----HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079 356 CLDMETEE-----KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 430 (450)
Q Consensus 356 ~~~l~~~~-----~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 430 (450)
++.++... ....+.+.|... | +.+..| .+.||||++ ...+++
T Consensus 385 ~i~~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~----------------------------g~~iRis~~-~~~t~~ 431 (449)
T 3a8u_X 385 AIQIAPRDGDAIVRPFEAGMALWKA---G-FYVRFG----------------------------GDTLQFGPT-FNSKPQ 431 (449)
T ss_dssp EEEECCBTTBSSHHHHHHHHHHHHH---T-EECEEE----------------------------TTEEEECCC-TTCCHH
T ss_pred EEEEecCcccccccHHHHHHHHHHC---C-cEEecC----------------------------CCEEEEECC-CcCCHH
Confidence 99997321 122466666532 2 333321 167999987 656666
Q ss_pred HHHHHHHHHHHh
Q 013079 431 RWSQFEKALSRM 442 (450)
Q Consensus 431 ~i~~l~~al~~~ 442 (450)
.++.+.++|.++
T Consensus 432 ~i~~~l~~l~~~ 443 (449)
T 3a8u_X 432 DLDRLFDAVGEV 443 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 195
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.89 E-value=1.7e-22 Score=205.64 Aligned_cols=211 Identities=21% Similarity=0.217 Sum_probs=149.8
Q ss_pred HHHH-HHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----
Q 013079 102 LNLS-RQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---- 175 (450)
Q Consensus 102 ~~l~-~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---- 175 (450)
+++. +++++++|.+.+.+ ++| |++|+..++.+++++||+|++.+++|+++..........-.+..+.+++.
T Consensus 93 e~~a~~~la~~~g~~~~~v~~~s---Gs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (447)
T 3h7f_A 93 ENLARDRAKALFGAEFANVQPHS---GAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPAT 169 (447)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTT
T ss_pred HHHHHHHHHHHcCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCccc
Confidence 4455 99999999988766 899 99999999999999999999999998773211000000001234444442
Q ss_pred --CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCC
Q 013079 176 --SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSI 247 (450)
Q Consensus 176 --~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~ 247 (450)
.|+++|++++...++++|++++++||++. ++++|.++|+++|+++|+|++| .++ ..++. .++|+++.|+
T Consensus 170 ~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~ 246 (447)
T 3h7f_A 170 HLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTV 246 (447)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEES
T ss_pred CCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecC
Confidence 38999999884457899999999998876 9999999999999999999997 322 12222 2579999999
Q ss_pred CCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH--HHHHHHHcc-CC-cHHHHHHHHHHHHHHHHHHHHhC
Q 013079 248 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP--KVAFELSER-IP-HLGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 248 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~--~~a~~~~~~-~~-~l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
||++++ .+. |++++++++++.+....... ..++.... .++..++.. .+ ++..+.++..++++++.+.|++.
T Consensus 247 sK~l~G--~~g-G~i~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 247 HKTLGG--GRS-GLIVGKQQYAKAINSAVFPG--QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp SGGGCC--CSC-EEEEECGGGHHHHHHHHTTT--TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred CcCCCC--CCe-EEEEECHHHHHHHhhhcCCc--ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999873 454 99999988888876654322 22333222 222222222 23 45667778889999999999876
No 196
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.89 E-value=1.2e-22 Score=207.35 Aligned_cols=259 Identities=10% Similarity=0.120 Sum_probs=169.5
Q ss_pred ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhC
Q 013079 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFF 162 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~ 162 (450)
++++.++...+++++|+++++ .+.++||+| |++|++.+++.+.. +| +.||+.++.|++.........
T Consensus 112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~s---GseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~ 188 (457)
T 3tfu_A 112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDS---GSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSIC 188 (457)
T ss_dssp SSSEECHHHHHHHHHHHHHSSTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTS
T ss_pred ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhccc
Confidence 355677889999999999995 467999999 99999999987764 55 489999999987543332110
Q ss_pred C-C--------ccCeeEEEeCC-------CCHHHHHHhhhc--CCceEEEEec-CCCCcccccC----HHHHHHHHHhcC
Q 013079 163 P-R--------ACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKG 219 (450)
Q Consensus 163 ~-~--------~~g~~v~~v~~-------~d~~~l~~ai~~--~~t~lv~i~~-~~NptG~v~~----l~~I~~la~~~g 219 (450)
. . .....+.+++. .|+++|++++.+ +++++|++++ ++|++|.+.+ +++|.++|+++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~g 268 (457)
T 3tfu_A 189 DPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYE 268 (457)
T ss_dssp CCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHT
T ss_pred CCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 0 01112333333 278899998831 6789999999 9999999876 999999999999
Q ss_pred CEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh----hhhhccCCCch
Q 013079 220 VTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMN 288 (450)
Q Consensus 220 i~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~ 288 (450)
+++|+||+|+++.... .....|++ |++|.+++..+|+ |++++++++++.+..... ...+..++.+.
T Consensus 269 illI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 269 VLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred CEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999996654221 12246777 6899998643688 999999999888753211 11122333333
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079 289 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 368 (450)
Q Consensus 289 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~ 368 (450)
+.++..++..++. ....++..++.+++.+.|+++.. .|.+. ...+.|.+++|+++.......+
T Consensus 346 ~aaa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~vr~~G~~~~i~l~~~~~~~~~ 408 (457)
T 3tfu_A 346 CAVSVASVELLLG-QDWRTRITELAAGLTAGLDTARA---LPAVT-------------DVRVCGAIGVIECDRPVDLAVA 408 (457)
T ss_dssp HHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHGGGGG---STTEE-------------EEEECSSCEEEEESSCCCHHHH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhc---CCCee-------------eeecCCeEEEEEECCcccHHHH
Confidence 3333333322111 12344556667778888876421 12111 1114677999999743224566
Q ss_pred HHHhhc
Q 013079 369 MNYLQN 374 (450)
Q Consensus 369 ~~~l~~ 374 (450)
.+.|..
T Consensus 409 ~~~l~~ 414 (457)
T 3tfu_A 409 TPAALD 414 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 197
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.89 E-value=1.4e-21 Score=199.67 Aligned_cols=176 Identities=12% Similarity=0.127 Sum_probs=129.9
Q ss_pred ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhC
Q 013079 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF 162 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~ 162 (450)
+..+..+...+++++|+++.+ .+.++||+| |++|+..+++.+.. .++.|++..+.|++.........
T Consensus 89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~g---GseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~ 165 (460)
T 3gju_A 89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLS---GSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLT 165 (460)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhcc
Confidence 345567888999999999874 467999999 99999999988763 46899999999988654432110
Q ss_pred CC--------ccCeeEEEeCC------CC------------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HH
Q 013079 163 PR--------ACNITTTFVDI------SD------------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IP 209 (450)
Q Consensus 163 ~~--------~~g~~v~~v~~------~d------------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~ 209 (450)
.. .....+..++. +| +++|++++.+ +++++|++++++|++|.+.+ ++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~ 245 (460)
T 3gju_A 166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE 245 (460)
T ss_dssp CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence 00 01112334442 12 6889888832 57889999999999998765 99
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079 210 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 210 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 274 (450)
+|.++|++||+++|+||+|+++.... .....|+++ ++|.+++.++|+ |++++++++++.+..
T Consensus 246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~~~l-g~v~~~~~i~~~~~~ 314 (460)
T 3gju_A 246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAYAPL-SGVIVADRVWQVLVQ 314 (460)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence 99999999999999999996663221 122356665 789998633798 899999999888853
No 198
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.89 E-value=4.6e-22 Score=201.41 Aligned_cols=292 Identities=13% Similarity=0.145 Sum_probs=185.0
Q ss_pred CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC---------
Q 013079 96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF--------- 162 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~--------- 162 (450)
+..+...++++.|+++++ .+.++||+| |++|++++++.+. ..+++|++.+|.|++.........
T Consensus 82 ~~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 158 (433)
T 1zod_A 82 MLSRPVVDLATRLANITPPGLDRALLLST---GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVG 158 (433)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCCEEEEESC---HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCc---hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccC
Confidence 446778999999999996 468999999 9999999998653 335799999999987544322110
Q ss_pred CCccCeeEEEeCC------C---------CHHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHHHHHhcCC
Q 013079 163 PRACNITTTFVDI------S---------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 220 (450)
Q Consensus 163 ~~~~g~~v~~v~~------~---------d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi 220 (450)
+...|+....++. . |+++|++++.+ +++++|++++++||||.+.+ +++|.++|++||+
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~ 238 (433)
T 1zod_A 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM 238 (433)
T ss_dssp CCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC
T ss_pred CCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Confidence 1112444333321 1 38899998832 57788888877899998766 9999999999999
Q ss_pred EEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh-hhhccCCCchHHHH
Q 013079 221 TVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVA 292 (450)
Q Consensus 221 ~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~a 292 (450)
++|+||+|+++.... .....|++ |++|.+++ |+|+ |++++++++++.+...... ..+..++.+.+.++
T Consensus 239 ~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 239 LLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG 314 (433)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred EEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence 999999997654211 12235654 68899996 8998 9999999988887652110 01122333333333
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------
Q 013079 293 FELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------- 361 (450)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------- 361 (450)
..++..++. ....++..++++++.+.|+++ +.....+ +.|.++++.++.
T Consensus 315 ~aal~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~ 374 (433)
T 1zod_A 315 LRVLDVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVR-------------------GRGLLLGVEIVKDRRTKEP 374 (433)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEE
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCC
Confidence 333322111 123455566677777777653 3210111 356788988762
Q ss_pred -HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079 362 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440 (450)
Q Consensus 362 -~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 440 (450)
......+.+.+.. .| +.+..|+. .+ .++.||||++ ...+++.++.+.++|.
T Consensus 375 ~~~~~~~~~~~l~~---~G-v~v~~~~~----------------------~~-~~~~lRi~~~-~~~t~~~i~~~l~~l~ 426 (433)
T 1zod_A 375 ADGLGAKITRECMN---LG-LSMNIVQL----------------------PG-MGGVFRIAPP-LTVSEDEIDLGLSLLG 426 (433)
T ss_dssp CTTHHHHHHHHHHH---TT-EECCEECC----------------------TT-SCCEEEECCC-TTCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---CC-CeEeccCC----------------------CC-CCCEEEEECC-cCCCHHHHHHHHHHHH
Confidence 1235567776654 23 34443321 01 1478999988 6555666666655555
Q ss_pred Hh
Q 013079 441 RM 442 (450)
Q Consensus 441 ~~ 442 (450)
++
T Consensus 427 ~~ 428 (433)
T 1zod_A 427 QA 428 (433)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 199
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.89 E-value=2.8e-22 Score=203.06 Aligned_cols=219 Identities=14% Similarity=0.182 Sum_probs=149.2
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHh---------CC
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FP 163 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~ 163 (450)
+.++...++++++++++ +.+.++||+| |++|++++++.+.. ++++||+..+.|+++....... .+
T Consensus 92 ~~~~~~~~l~~~la~~~~~~~~v~~~~s---Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 168 (434)
T 3l44_A 92 TPTALEVKFAKMLKEAMPALDKVRFVNS---GTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTP 168 (434)
T ss_dssp SCCHHHHHHHHHHHHHCTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCc---hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCC
Confidence 45778899999999998 5688999999 99999999987654 6789999999998754322100 00
Q ss_pred CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...++ .+..++.+|+++|++++.. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~ 248 (434)
T 3l44_A 169 DSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF 248 (434)
T ss_dssp SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred CcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce
Confidence 00111 4556666799999998832 56889999988889999887 999999999999999999999765
Q ss_pred CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079 232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
.... .....|++ |+||.++ +|+|+ |++++++++++.+..... ...+..++.+.+.++..++..++. +
T Consensus 249 ~~g~~~~~~~~~~~~di~--t~sK~~~-~G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~ 323 (434)
T 3l44_A 249 RFMYGGAQDLLGVTPDLT--ALGKVIG-GGLPI-GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-E 323 (434)
T ss_dssp TSSSSCHHHHHTCCCSEE--EEEGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-T
T ss_pred eccccHHHHHcCCCCCee--ehhhhhc-CCcCe-eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-c
Confidence 2111 12235655 5889998 68998 888999988877653211 111223333333333333332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013079 304 LRMKEHCHRALIFARRMKK 322 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~ 322 (450)
...++..++++++.+.|++
T Consensus 324 ~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 324 GLYEKLDELGATLEKGILE 342 (434)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666654
No 200
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.89 E-value=2.7e-21 Score=197.47 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=141.3
Q ss_pred ccccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHH
Q 013079 91 FIYSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTH 160 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~ 160 (450)
|.+.++.++...+++++|+++++ .+.++||+| |++|+..+++.+.. .+++||+..+.|+++......
T Consensus 86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~g---gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~ 162 (459)
T 4a6r_A 86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNS---GSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGAS 162 (459)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHh
Confidence 33445678889999999999984 578999999 99999999998765 468999999999986544322
Q ss_pred hCCC--------ccCeeEEEeCCC---------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----H
Q 013079 161 FFPR--------ACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----I 208 (450)
Q Consensus 161 ~~~~--------~~g~~v~~v~~~---------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l 208 (450)
.... .....+..++.. | +++|++++.. +++++|++++++|++|.+.+ +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 242 (459)
T 4a6r_A 163 LGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYW 242 (459)
T ss_dssp HSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHH
T ss_pred hcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHH
Confidence 1110 011133344422 2 7888888832 56788999988888888877 9
Q ss_pred HHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh--hhh
Q 013079 209 PELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGA 279 (450)
Q Consensus 209 ~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~ 279 (450)
++|.++|++||+++|+||+|+++.... .....|+++ ++|.++++++|+ |++++++++++.+...+ ...
T Consensus 243 ~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~~~~~~~~~ 319 (459)
T 4a6r_A 243 PEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLIAGGDFNHG 319 (459)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCCc-cceeeCHHHHHHhhcCCCcccC
Confidence 999999999999999999996653221 122457765 789999766898 89999999988886321 112
Q ss_pred hhccCCCchHHHHHHHH
Q 013079 280 LMLLGPTMNPKVAFELS 296 (450)
Q Consensus 280 ~~~~g~~~~~~~a~~~~ 296 (450)
.+..++.+.+.++..++
T Consensus 320 ~t~~~~~~~~aaa~aal 336 (459)
T 4a6r_A 320 FTYSGHPVCAAVAHANV 336 (459)
T ss_dssp HHHCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 22445555544444443
No 201
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.88 E-value=2.1e-22 Score=204.95 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=121.9
Q ss_pred CCChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 96 HFNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
......+++++.+|+ +|++. +++|+| +++|+.+++++++++||+|++++++|+++...+. ..|.++.+++
T Consensus 54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G---~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~ 124 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDYDGYFLVNG---TTSGILSVIQSFSQKKGDILMARNVHKSVLHALD-----ISQQEGHFIE 124 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTEEEEEESSH---HHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH-----HHTCCEEECE
T ss_pred CcchHHHHHHHHHHh-cCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH-----HcCCeEEEEe
Confidence 456678999999999 99864 678888 9999999999999999999999999999988775 2466666665
Q ss_pred C--C---------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CC-----CCccC
Q 013079 175 I--S---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-----LSPAR 237 (450)
Q Consensus 175 ~--~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~-----~~~~~ 237 (450)
. + |+++| + .+++++|++++ .|++|.+.|+++|+++|+++|+++|+|++|+. +. .+...
T Consensus 125 ~~~~~~~~~~~~~d~~~l---~-~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~ 199 (446)
T 2x3l_A 125 THQSPLTNHYNKVNLSRL---N-NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLN 199 (446)
T ss_dssp EEECTTTSSEEEEEC-----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGG
T ss_pred CeeccccCcCCCCCHHHH---c-CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHH
Confidence 4 2 44555 4 67899999999 55699999999999999999999999999853 31 23344
Q ss_pred CCCeEEEeCCCCccc-cCccceEEEEEcCHHHHH
Q 013079 238 LGADVVVHSISKFIS-GGADIIAGAVCGPANLVN 270 (450)
Q Consensus 238 ~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~ 270 (450)
.++|+++.|+||+++ +.| + |+++.++++++
T Consensus 200 ~g~Di~~~S~~K~l~~~~g--~-g~l~~~~~~i~ 230 (446)
T 2x3l_A 200 YQADYVVQSFHKTLPALTM--G-SVLYIHKNAPY 230 (446)
T ss_dssp GTCSEEEECHHHHSSSCTT--C-EEEEEETTCTT
T ss_pred cCCCEEEECCccccccccc--c-EEEEEcCCcCC
Confidence 578999999999554 444 4 88877665543
No 202
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.88 E-value=6.8e-21 Score=194.18 Aligned_cols=255 Identities=15% Similarity=0.132 Sum_probs=159.5
Q ss_pred cccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC--
Q 013079 92 IYSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR-- 164 (450)
Q Consensus 92 ~y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~-- 164 (450)
.+..+..+...+++++|+++++ .+.++||+| |++|++.+++.+. ..+++|++..+.|++...........
T Consensus 100 ~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~s---GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 176 (453)
T 4ffc_A 100 CFMVTPYEQYVQVAELLNALTPGDHDKRTALFNS---GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSM 176 (453)
T ss_dssp TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred ccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCc---HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCc
Confidence 3445677888999999999986 467999999 9999999997654 24579999999999865543222110
Q ss_pred -------ccCeeEEEeCCC----C-------------HHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079 165 -------ACNITTTFVDIS----D-------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAH 216 (450)
Q Consensus 165 -------~~g~~v~~v~~~----d-------------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~ 216 (450)
.....+..++.. | ++.|++++..+++++|++++.+++.|.+.+ +++|.++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 011134444433 3 356666662234567777766666677765 999999999
Q ss_pred hcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079 217 DKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 289 (450)
Q Consensus 217 ~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~ 289 (450)
+||+++|+||+|.++.... .....|++ +++|.+++ |+|+ |++++++++++.+..... ..+..++.+.+
T Consensus 257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~ 331 (453)
T 4ffc_A 257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTC 331 (453)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHH
T ss_pred HcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHH
Confidence 9999999999996653221 11235665 47899997 8998 899889888877654332 22233344444
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-----
Q 013079 290 KVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----- 360 (450)
Q Consensus 290 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----- 360 (450)
.++..++..++. ....++..++.+++.+.|+ +++..... .+.|.++++.+.
T Consensus 332 aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~~~~~ 391 (453)
T 4ffc_A 332 AAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIGEV-------------------RGRGAMLAIEIVKPGTL 391 (453)
T ss_dssp HHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE-------------------EEETTEEEEEEBCTTSC
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EeeceEEEEEEecCccc
Confidence 444333332111 1223333444444554444 44431111 146779999883
Q ss_pred --CHHHHHHHHHHhhc
Q 013079 361 --TEEKANRLMNYLQN 374 (450)
Q Consensus 361 --~~~~~~~~~~~l~~ 374 (450)
.......+...+..
T Consensus 392 ~~~~~~~~~~~~~l~~ 407 (453)
T 4ffc_A 392 EPDAALTKSIAAEALS 407 (453)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 34446667776654
No 203
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.88 E-value=3.7e-21 Score=197.89 Aligned_cols=243 Identities=10% Similarity=0.060 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhCCC-----------eEEEecChHHHHHHHHHHHHHhccC---------CC--------E--EEEeCCCc
Q 013079 102 LNLSRQMAALEGTE-----------AAYCTASDKAGMSAISSVLMQLCSS---------GG--------H--VVAARTLY 151 (450)
Q Consensus 102 ~~l~~~iA~l~g~~-----------~~~~tsg~~~gt~ai~~al~~l~~~---------gd--------~--Vi~~~~~y 151 (450)
+++++.+++++|.+ ..++|+| ||+|+.+++.++... || . |+++.+.|
T Consensus 116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g---gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h 192 (486)
T 1js3_A 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS---ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (486)
T ss_dssp HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHhCCCchhcccCCCCCCeEEcCC---cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence 34555667888865 3699999 999999998765321 42 3 78899999
Q ss_pred hhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCc------eEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079 152 GGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELSRLAHDKGV 220 (450)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t------~lv~i~~~~NptG~v~~l~~I~~la~~~gi 220 (450)
.++...+. ..|++++.++.+ |+++|+++| ++++ .+|++++++|+||.+.|+++|+++|+++|+
T Consensus 193 ~s~~~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~ 266 (486)
T 1js3_A 193 SSVERAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI 266 (486)
T ss_dssp HHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTC
T ss_pred HHHHHHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 99888775 368888888874 899999999 5555 388899999999999999999999999999
Q ss_pred EEEEeCCCCCCC--CC-cc----C-CCCeEEEeCCCCccccCccceEEEEEc-CHHH-HHHHH---HHhhh-hh------
Q 013079 221 TVVVDNTFSPLV--LS-PA----R-LGADVVVHSISKFISGGADIIAGAVCG-PANL-VNSMM---DLHQG-AL------ 280 (450)
Q Consensus 221 ~livD~~~~~~~--~~-~~----~-~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~-~~~l~---~~~~~-~~------ 280 (450)
++|+|++|+... .. .. . .++|.++.|+||+++++ ..+ |+++. ++.. .+.+. .+..+ ..
T Consensus 267 ~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~ 344 (486)
T 1js3_A 267 WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT 344 (486)
T ss_dssp EEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC------------CCSCC
T ss_pred EEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCCcccccCCC
Confidence 999999995432 11 11 1 26899999999999975 445 77655 4443 23221 00000 00
Q ss_pred ------hccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCc
Q 013079 281 ------MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGF 351 (450)
Q Consensus 281 ------~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~ 351 (450)
...+........+.++. +.+.+.+..++..++++++.+.|++.+ +++..+. .
T Consensus 345 ~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~ 405 (486)
T 1js3_A 345 DYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------------T 405 (486)
T ss_dssp CGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------------C
T ss_pred CccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-------------------c
Confidence 00111122222322222 335567777888889999999999874 3554321 2
Q ss_pred CcEEEEEeCC-HHHHHHHHHHhhc
Q 013079 352 GGLLCLDMET-EEKANRLMNYLQN 374 (450)
Q Consensus 352 g~~~~~~l~~-~~~~~~~~~~l~~ 374 (450)
+++++|.+++ ......+.+.|..
T Consensus 406 ~~~v~f~~~~~~~~~~~l~~~L~~ 429 (486)
T 1js3_A 406 LGLVCFRLKGSDGLNEALLERINS 429 (486)
T ss_dssp SSEEEEEESSCHHHHHHHHHHHHH
T ss_pred eeEEEEEecChHHHHHHHHHHHHh
Confidence 3488898874 2224667777654
No 204
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.88 E-value=4.8e-21 Score=198.11 Aligned_cols=294 Identities=11% Similarity=0.097 Sum_probs=192.2
Q ss_pred CChhHHHHHH----HHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc--------------CCCEEEEeCCCchhH
Q 013079 97 FNPTVLNLSR----QMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS--------------SGGHVVAARTLYGGT 154 (450)
Q Consensus 97 ~~~~~~~l~~----~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~--------------~gd~Vi~~~~~y~~~ 154 (450)
..|...++++ .+++++|.+ .++||+| ||+|+..++.++.. +++.|+++...|.++
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~g---gt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~ 205 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPG---GAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI 205 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESS---HHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCc---hHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence 4555555544 567777765 5799999 99999999887654 467899999999999
Q ss_pred HHHHHHhCCCccCe---eEEEeCCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079 155 HALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELSRLAHDKGV 220 (450)
Q Consensus 155 ~~~~~~~~~~~~g~---~v~~v~~~-----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~I~~la~~~gi 220 (450)
...+.. .|. ++..++.+ |+++|+++| +++ +++|++++++|++|.+.|+++|+++|+++|+
T Consensus 206 ~~~~~~-----~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~ 279 (511)
T 3vp6_A 206 KKAGAA-----LGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL 279 (511)
T ss_dssp HHHHHH-----TTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred HHHHHH-----cCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC
Confidence 888752 344 77777765 899999999 433 8899999999999999999999999999999
Q ss_pred EEEEeCCCCC-CCCCc----c---CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhh-----------
Q 013079 221 TVVVDNTFSP-LVLSP----A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM----------- 281 (450)
Q Consensus 221 ~livD~~~~~-~~~~~----~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~----------- 281 (450)
++|+|++|+. ....+ . ..++|+++.++||+++.+.. .|++++.++.++.........+..
T Consensus 280 ~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 358 (511)
T 3vp6_A 280 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ-CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYD 358 (511)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC-CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGC
T ss_pred EEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC-eEEEEEeCHHHHHHHhccCCccccCcccccccccC
Confidence 9999999933 32221 1 12579999999999886633 434445566555544221111100
Q ss_pred ------ccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079 282 ------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFG 352 (450)
Q Consensus 282 ------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g 352 (450)
..+.......++.++. +.+.+.+++++..++++++.+.|++.+ +++..+.-+ ..
T Consensus 359 ~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p-----------------~~ 421 (511)
T 3vp6_A 359 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-----------------EH 421 (511)
T ss_dssp CGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC-----------------SS
T ss_pred ccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-----------------Ce
Confidence 0111122333333332 445677888888999999999999874 455442101 23
Q ss_pred cEEEEEeCCH---------H-------HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079 353 GLLCLDMETE---------E-------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 416 (450)
Q Consensus 353 ~~~~~~l~~~---------~-------~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 416 (450)
++++|.+... . ....+.+.|... |.+.++.. + . +-..+
T Consensus 422 ~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---G~~~~~~~--------~-~--------------~~~~~ 475 (511)
T 3vp6_A 422 TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------P-Q--------------GDKAN 475 (511)
T ss_dssp SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH---TSCEEEEE--------E-E--------------TTEEE
T ss_pred EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc---CCEEEEEE--------E-e--------------CCceE
Confidence 3677765311 0 122455555432 21222210 0 0 00124
Q ss_pred eEEEEe-CCCCCHHHHHHHHHHHHHHhhh
Q 013079 417 LVRMSV-GYLGTLDQRWSQFEKALSRMQD 444 (450)
Q Consensus 417 ~iRiS~-g~~~~~~~~i~~l~~al~~~~~ 444 (450)
.+||++ + ..++.+.++.+.+++.++.+
T Consensus 476 ~lRi~~~~-~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 476 FFRMVISN-PAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp EEEECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 799999 5 67788888888888887643
No 205
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.88 E-value=8e-21 Score=193.55 Aligned_cols=292 Identities=16% Similarity=0.121 Sum_probs=181.4
Q ss_pred ccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCC---
Q 013079 93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR--- 164 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~--- 164 (450)
+..+..+...+++++|+++.+ .+.++||+| |++|+.++++.+.. .+++|++..+.|++...........
T Consensus 98 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~s---GseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~ 174 (451)
T 3oks_A 98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNS---GSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMP 174 (451)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCc---HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcc
Confidence 445667888999999999985 467999999 99999999987653 4478999999999865443221100
Q ss_pred ------ccCeeEEEeCCC------------------CHHHHHHhhh---c-CCceEEEEecCCCCcccccC----HHHHH
Q 013079 165 ------ACNITTTFVDIS------------------DHEMVNSAIV---Q-GRTKVLYFESISNPTLAVAN----IPELS 212 (450)
Q Consensus 165 ------~~g~~v~~v~~~------------------d~~~l~~ai~---~-~~t~lv~i~~~~NptG~v~~----l~~I~ 212 (450)
.....+..++.. +++.+++.+. . +++++|++++++++.|.+.+ +++|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~ 254 (451)
T 3oks_A 175 YKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLL 254 (451)
T ss_dssp TTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred cccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHH
Confidence 011134455443 2344444442 1 45778888887777777766 99999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC
Q 013079 213 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 285 (450)
Q Consensus 213 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~ 285 (450)
++|++||+++|+||+|+++... ......|++ |++|.+++ |+|+ |++++++++++.+..... ..+..++
T Consensus 255 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~ 329 (451)
T 3oks_A 255 DWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGN 329 (451)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSC
T ss_pred HHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCC
Confidence 9999999999999999655321 112235666 58899996 8998 899889888877654332 2223334
Q ss_pred CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe--
Q 013079 286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-- 359 (450)
Q Consensus 286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l-- 359 (450)
.+.+.++..++..++. ....++..++.+++.+.|+ +++..... .+.|.++++.+
T Consensus 330 ~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~G~~~~~~~~~ 389 (451)
T 3oks_A 330 PIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-------------------RGRGAMIAMELVK 389 (451)
T ss_dssp HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-------------------EEETTEEEEEEBS
T ss_pred HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EEeeEEEEEEEec
Confidence 3444333333322111 1223344444555555554 34431111 14677999998
Q ss_pred -----CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079 360 -----ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 434 (450)
Q Consensus 360 -----~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 434 (450)
+.......+...+... | +.+..+ +...+.+||++. ...+++.++.
T Consensus 390 ~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~ 439 (451)
T 3oks_A 390 AGTTEPDADLTKALCAGAHAA---G-VIVLSC-------------------------GTYGNVVRFLPP-LSIGDDLLNE 439 (451)
T ss_dssp TTSCCBCHHHHHHHHHHHHHT---T-EECEEE-------------------------CTTSCEEEECCC-TTCCHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHhC---C-cEEecC-------------------------CCCCCEEEEECC-CCCCHHHHHH
Confidence 3444566777776642 3 332221 111368999988 6656666666
Q ss_pred HHHHHHHh
Q 013079 435 FEKALSRM 442 (450)
Q Consensus 435 l~~al~~~ 442 (450)
+.++|.++
T Consensus 440 ~l~~l~~~ 447 (451)
T 3oks_A 440 GLDVLEEV 447 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 206
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.88 E-value=2.9e-21 Score=197.81 Aligned_cols=243 Identities=12% Similarity=0.169 Sum_probs=160.6
Q ss_pred ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhC
Q 013079 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF 162 (450)
Q Consensus 93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~ 162 (450)
+.++.++...+++++|+++.+ .+.++|++| |++|+..+++.+.. .+++||+..+.|+++........
T Consensus 93 ~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~s---GseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~ 169 (472)
T 3hmu_A 93 FFKTTHVPAIALAQKLAELAPGDLNHVFFAGG---GSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALG 169 (472)
T ss_dssp SSSEECHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhcc
Confidence 345567889999999999985 467999999 99999999998764 46789999999988654332111
Q ss_pred C---------CccCeeEEEeCCC---------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HH
Q 013079 163 P---------RACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IP 209 (450)
Q Consensus 163 ~---------~~~g~~v~~v~~~---------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~ 209 (450)
. ...+ +..++.+ | +++|++++.. +++++|++++++|++|.+.+ ++
T Consensus 170 ~~~~~~~~~~~~~~--~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~ 247 (472)
T 3hmu_A 170 GMAGMHAQSGLIPD--VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWP 247 (472)
T ss_dssp CCHHHHHTTCCCSS--EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHH
T ss_pred CChhhccccCCCCC--cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHH
Confidence 0 0012 3334322 1 7888888831 56889999999999999887 99
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhhh
Q 013079 210 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALM 281 (450)
Q Consensus 210 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~ 281 (450)
+|.++|+++|+++|+||+|+++.... .....|+++ ++|.+++.++++ |++++++++++.+.... ....+
T Consensus 248 ~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~~~t 324 (472)
T 3hmu_A 248 EIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNHGYT 324 (472)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCCCCT
T ss_pred HHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcce-EEEEECHHHHHhcccCCccccCC
Confidence 99999999999999999996663221 122467776 779999776898 89989999988872110 11112
Q ss_pred ccCCCchHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079 282 LLGPTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360 (450)
Q Consensus 282 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 360 (450)
..++.+.+.++..++..++. +...++.. ++.+++.+.|+++.. .|... ...+.|.++.|++.
T Consensus 325 ~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~vr~~G~~~~i~~~ 387 (472)
T 3hmu_A 325 YSGHPVAAAVALENLRILEE-ENILDHVRNVAAPYLKEKWEALTD---HPLVG-------------EAKIVGMMASIALT 387 (472)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHGGGG---STTEE-------------EEEEETTEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEEecCceEEEEEe
Confidence 33333433333333322211 12344455 666777777765421 11100 11246779999986
No 207
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.88 E-value=7.4e-22 Score=199.81 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=153.2
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHh---------CC
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FP 163 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~ 163 (450)
+.++...+++++|++++ +.+.++||+| |++|+..+++.+.. .+++|++..+.|++........ .+
T Consensus 90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~---Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 166 (429)
T 3k28_A 90 APTEIENKLAKLVIERVPSIEIVRMVNS---GTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLP 166 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----C
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCC---hHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence 45788899999999998 5788999999 99999999987653 5678999999998654221100 00
Q ss_pred CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...++ .+..++.+|+++|++++.. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~ 246 (429)
T 3k28_A 167 DSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF 246 (429)
T ss_dssp CCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 00111 3455566699999998832 56789999998989999988 999999999999999999999665
Q ss_pred CCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcH
Q 013079 232 VLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHL 302 (450)
Q Consensus 232 ~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l 302 (450)
... .....|++ ++||.+++ |+++ |++++++++++.+..... ...+..++.+.+.++..++...+
T Consensus 247 -~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~i-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-- 319 (429)
T 3k28_A 247 -RVAYNCGQGYYGVTPDLT--CLGKVIGG-GLPV-GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-- 319 (429)
T ss_dssp -TSSTTHHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--
T ss_pred -ccCcchHHHHhCCCCcee--hhhhhhcC-CCCe-EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--
Confidence 211 12235665 48899985 8998 999999988877643221 11112333344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013079 303 GLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~~ 323 (450)
++..++..++++++.+.|++.
T Consensus 320 ~~~~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 320 PESYVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888663
No 208
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.88 E-value=4.1e-21 Score=198.45 Aligned_cols=219 Identities=10% Similarity=0.041 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc--------CC-----C-EEEEeCCCchhHHHHHHHhCC
Q 013079 102 LNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS--------SG-----G-HVVAARTLYGGTHALLTHFFP 163 (450)
Q Consensus 102 ~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~--------~g-----d-~Vi~~~~~y~~~~~~~~~~~~ 163 (450)
+++.+.+++++|.+ .++||+| ||+|+.+++.++.. +| + .|+++.+.|+++...+... .
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~g---gtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g 210 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPG---GAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-G 210 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESS---HHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-T
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCC---cHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-C
Confidence 44556779999865 5899999 99999999987642 46 6 7899999999998887522 1
Q ss_pred CccCe-eEEEeCCC-----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACNI-TTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g~-~v~~v~~~-----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
.|. +++.++.+ |+++|++++ ++ ++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+..
T Consensus 211 --~g~~~v~~v~~~~~~~~d~~~L~~~i-~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~ 287 (504)
T 2okj_A 211 --FGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 287 (504)
T ss_dssp --SCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred --CCcccEEEEecCCCCCCCHHHHHHHH-HHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhH
Confidence 244 77888765 899999998 43 5899999999999999999999999999999999999999433
Q ss_pred CC-C-----ccC-C-CCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCC-----------------
Q 013079 232 VL-S-----PAR-L-GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGP----------------- 285 (450)
Q Consensus 232 ~~-~-----~~~-~-g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~----------------- 285 (450)
.. . ... + ++|+++.|+||+++++. .+ |+++.+ ++++.........+....+.
T Consensus 288 ~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~-g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r 365 (504)
T 2okj_A 288 LLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QC-SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGR 365 (504)
T ss_dssp GGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSC
T ss_pred HHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ce-EEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCC
Confidence 21 1 111 2 68999999999999653 35 777655 45555432111111100000
Q ss_pred CchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079 286 TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLY 329 (450)
Q Consensus 286 ~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~ 329 (450)
.......++.+. +.+.+.+..++..++++++.+.|++.+ +++..
T Consensus 366 r~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 412 (504)
T 2okj_A 366 HVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 412 (504)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESS
T ss_pred CccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 011222222222 234456667778889999999998874 45543
No 209
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.88 E-value=4.7e-21 Score=195.83 Aligned_cols=315 Identities=14% Similarity=0.079 Sum_probs=184.4
Q ss_pred CC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccC-----C---
Q 013079 71 ME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSS-----G--- 141 (450)
Q Consensus 71 ~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~-----g--- 141 (450)
+. .+++.+.+.. +.+.|+ ..+...+++++||++++.+.++||+| |++|+++++++++.+ |
T Consensus 53 ~~v~~a~~~~l~~------~~~~y~--~~~~~~~l~~~la~~~~~~~v~~t~~---gt~A~~~al~~~~~~~~~~~G~~~ 121 (467)
T 2oqx_A 53 GAVTQSMQAAMMR------GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQ---GRGAEQIYIPVLIKKREQEKGLDR 121 (467)
T ss_dssp SCCCHHHHHHTTS------CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEEC-----CCSHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHhcc------Ccceec--cCchhHHHHHHHHHHhCcCcEEEcCC---cHHHHHHHHHHHhccccccCCCCc
Confidence 44 3666666532 112344 35678899999999999999999999 999999999998887 8
Q ss_pred -CEEEEeCCCchh-HHHHHHHhCCCccCeeEEE------eC------C---CCHHHHHHhhhc---CCceEEEEecCCCC
Q 013079 142 -GHVVAARTLYGG-THALLTHFFPRACNITTTF------VD------I---SDHEMVNSAIVQ---GRTKVLYFESISNP 201 (450)
Q Consensus 142 -d~Vi~~~~~y~~-~~~~~~~~~~~~~g~~v~~------v~------~---~d~~~l~~ai~~---~~t~lv~i~~~~Np 201 (450)
|+|++. +.|.. +..... . .|..+.. ++ . .|+++|++++.. +++++|++++|+||
T Consensus 122 ~d~Ii~~-~~h~~t~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~ 195 (467)
T 2oqx_A 122 SKMVAFS-NYFFDTTQGHSQ-I----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195 (467)
T ss_dssp TTCEEEE-SSCCHHHHHHHH-H----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCG
T ss_pred cceEEec-ccccccchhhhh-c----cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccC
Confidence 998877 44433 223222 1 1222211 11 1 289999999932 47999999999999
Q ss_pred c-cccc---CHHHHHHHHHhcCCEEEEeCCCCC-------------CCCCccC------CCCeEEEeCCCCccccCccce
Q 013079 202 T-LAVA---NIPELSRLAHDKGVTVVVDNTFSP-------------LVLSPAR------LGADVVVHSISKFISGGADII 258 (450)
Q Consensus 202 t-G~v~---~l~~I~~la~~~gi~livD~~~~~-------------~~~~~~~------~g~di~~~S~sK~~g~~g~~i 258 (450)
+ |.+. ++++|+++|++||+++|+|+++.. ...++.. ...|+++.|+||.++++ +
T Consensus 196 ~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~ 272 (467)
T 2oqx_A 196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---M 272 (467)
T ss_dssp GGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---S
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---C
Confidence 8 7765 478999999999999999976511 1122222 23688899999999866 3
Q ss_pred EEEEEcCHH-HHHHHHHHhhh-----hhhccCCCchHHHHHHHHccCC-cH-HHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079 259 AGAVCGPAN-LVNSMMDLHQG-----ALMLLGPTMNPKVAFELSERIP-HL-GLRMKEHCHRALIFARRMKKLGLKVLYP 330 (450)
Q Consensus 259 gG~l~~~~~-~~~~l~~~~~~-----~~~~~g~~~~~~~a~~~~~~~~-~l-~~~~~~~~~~~~~l~~~L~~~~~~v~~p 330 (450)
||+++++++ +++.+...+.. .....+. ........+...++ .+ ..++++..++++++.+.|++++..+. |
T Consensus 273 Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~ 350 (467)
T 2oqx_A 273 GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG-LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-Q 350 (467)
T ss_dssp CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-E
T ss_pred ceEEEecChhHHHHHHHHHHhhhccCCcccccc-hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-c
Confidence 588887765 44433322211 0001122 22221111111111 11 23445556778899999988765544 4
Q ss_pred CCCCCchhHHHHHHhccCCCcCcEEEEEeC----C--HHH--HHHHHHHh-hccccccccccccccccccccccccccCC
Q 013079 331 GLEDHPHHELLKSMANKEYGFGGLLCLDME----T--EEK--ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSS 401 (450)
Q Consensus 331 ~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~~--~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~ 401 (450)
. .|.++++.++ + ... ...+...| .. .| +.++.|+.|.....+... .
T Consensus 351 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g-v~~~~~~~~~~~~~~~~g--~ 405 (467)
T 2oqx_A 351 A-------------------GGHAAFVDAGKLLPHIPADQFPAQALACELYKV---AG-IRAVEIGSFLLGRDPKTG--K 405 (467)
T ss_dssp E-------------------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHH---HC-EECEEESHHHHCBCTTTC--S
T ss_pred C-------------------CceEEEEechhhcccCCcccccHHHHHHHHHHh---cC-ceeccccccccccccccc--c
Confidence 2 2457778773 1 111 34456666 43 23 566654433211100000 0
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHH
Q 013079 402 ELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSR 441 (450)
Q Consensus 402 ~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~~ 441 (450)
......+.||||++ .. .+++.++.+.++|.+
T Consensus 406 --------~~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~ 437 (467)
T 2oqx_A 406 --------QLPCPAELLRLTIP-RATYTQTHMDFIIEAFKH 437 (467)
T ss_dssp --------BCCCSCCEEEECCC-TTTSCHHHHHHHHHHHHH
T ss_pred --------cccCccCeEEEEec-CCCCCHHHHHHHHHHHHH
Confidence 00011478999999 76 555555555444443
No 210
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.87 E-value=1.4e-20 Score=191.64 Aligned_cols=294 Identities=12% Similarity=0.100 Sum_probs=185.1
Q ss_pred CCCChhHHHHHHHHHHHhCCC-eEEEecChHHHHHHHHHHHHHhc-----c---CCCEEEEeCCCchhHHHHHHHhCCC-
Q 013079 95 RHFNPTVLNLSRQMAALEGTE-AAYCTASDKAGMSAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPR- 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g~~-~~~~tsg~~~gt~ai~~al~~l~-----~---~gd~Vi~~~~~y~~~~~~~~~~~~~- 164 (450)
.+.++...+++++|+++++.+ .++||+| |++|++.+++.+. . ++++|++..+.|++...........
T Consensus 87 ~~~~~~~~~la~~l~~~~~~~~~v~~~~g---gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 163 (452)
T 3n5m_A 87 SQSHEPAIKLAEKLNEWLGGEYVIFFSNS---GSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQA 163 (452)
T ss_dssp TSEEHHHHHHHHHHHHHHTSCEEEEEESS---HHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCG
T ss_pred ccCCHHHHHHHHHHHHhCCCCceEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCch
Confidence 456788899999999998742 3899999 9999999999876 4 6789999999998865433211100
Q ss_pred -------ccCeeEEEeCC--------CC---------HHHHHHhhh---cCCceEEEEecC-CCCcccccC----HHHHH
Q 013079 165 -------ACNITTTFVDI--------SD---------HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELS 212 (450)
Q Consensus 165 -------~~g~~v~~v~~--------~d---------~~~l~~ai~---~~~t~lv~i~~~-~NptG~v~~----l~~I~ 212 (450)
.....+.+++. .| +++|++++. .+++++|+++++ +| +|.+.+ +++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~ 242 (452)
T 3n5m_A 164 QRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVH 242 (452)
T ss_dssp GGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHH
T ss_pred hhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHH
Confidence 01112344443 23 899999983 267889999999 89 998876 99999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCC-----c--cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHH---Hhh--hh
Q 013079 213 RLAHDKGVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQ--GA 279 (450)
Q Consensus 213 ~la~~~gi~livD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~---~~~--~~ 279 (450)
++|++||+++|+||+|.++... . .....|+++ ++|.+++ | +|+ |++++++++++.+.. .+. ..
T Consensus 243 ~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~~~~~ 318 (452)
T 3n5m_A 243 ETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEFFRHI 318 (452)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCSCCCC
T ss_pred HHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccC-CCcce-EEEEECHHHHHHHhhccCCCCcccc
Confidence 9999999999999999655321 1 122356664 8899997 8 998 899999988877642 111 11
Q ss_pred hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079 280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 355 (450)
Q Consensus 280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 355 (450)
.+..++.+.+.++..++..++. +...++..++.+++.+.|++. +..... .+.|.++
T Consensus 319 ~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~g~~~ 378 (452)
T 3n5m_A 319 NTFGGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDI-------------------RGKGLLV 378 (452)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-------------------EESSSCE
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-------------------EEEEEEE
Confidence 1123333333333333322111 123344555556666666543 321111 1456788
Q ss_pred EEEeCC---------HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079 356 CLDMET---------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 426 (450)
Q Consensus 356 ~~~l~~---------~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 426 (450)
++.+.. .+....+...+.. .| +.+..++.+. ...++.|||+++ ..
T Consensus 379 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~---~G-v~~~~~~~~~---------------------~~~~~~iRi~~~-~~ 432 (452)
T 3n5m_A 379 GIELVNDKETKEPIDNDKIASVVNACKE---KG-LIIGRNGMTT---------------------AGYNNILTLAPP-LV 432 (452)
T ss_dssp EEEEEEETTTTEECCHHHHHHHHHHHHH---TT-EECEECTTSS---------------------TTCCCEEEECCC-TT
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHH---CC-cEEeecCccc---------------------CCCCCEEEEECC-CC
Confidence 888731 2233456666554 23 3333332110 011578999988 76
Q ss_pred CHHHHHHHHHHHHHHh
Q 013079 427 TLDQRWSQFEKALSRM 442 (450)
Q Consensus 427 ~~~~~i~~l~~al~~~ 442 (450)
.+++.++.+.++|+++
T Consensus 433 ~t~e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 433 ISSEEIAFVIGTLKTA 448 (452)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666677766666654
No 211
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.87 E-value=8.3e-22 Score=199.70 Aligned_cols=252 Identities=13% Similarity=0.173 Sum_probs=167.3
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhC---------C
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------P 163 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~---------~ 163 (450)
+..+...++++.|++++ +.+.++||+| |++|+.++++.. +..+++||+..+.|++......... +
T Consensus 93 ~~~~~~~~l~~~la~~~~~~~~v~~~~s---gseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 169 (434)
T 2epj_A 93 APGEAEVLLAEKILGYVKRGGMIRFVNS---GTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVP 169 (434)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCC
Confidence 35778899999999999 7889999999 999999999862 3446789998899987543210000 0
Q ss_pred CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...|+ .+..++..|+++|++++.+ +++++|++++++|++|.+.+ +++|.++|+++|+++|+||+|+++
T Consensus 170 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 249 (434)
T 2epj_A 170 TSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF 249 (434)
T ss_dssp SSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred CCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce
Confidence 11233 3555666799999999832 47889999988889999988 999999999999999999999765
Q ss_pred CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079 232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
.... .....|++ |++|.+++ |+++ |++++++++++.+..... ...+..++.+.+.++..++..++. .
T Consensus 250 ~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~ 324 (434)
T 2epj_A 250 RLGLEGAQGYFNIEGDII--VLGKIIGG-GFPV-GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-E 324 (434)
T ss_dssp TSSTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-S
T ss_pred eCCcchhhHHhCCCCCee--eecchhcC-Ccce-eeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-c
Confidence 3211 12246765 68899997 8887 999999888776643111 011112222232232222222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHH
Q 013079 304 LRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKAN 366 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~ 366 (450)
...++..++++++.+.|+++ +.....+ +.|.++++.++. .....
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 385 (434)
T 2epj_A 325 PVYSVSREAAKALEEAASEVLDRTGLPYTIN-------------------RVESMMQLFIGVEEVSNAAQARKADKKFYV 385 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE-------------------EETTEEEEEETCSCCSSHHHHTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEeCCCcccchhccccCHHHHH
Confidence 23455666777777777653 3311111 357799999874 23356
Q ss_pred HHHHHhhc
Q 013079 367 RLMNYLQN 374 (450)
Q Consensus 367 ~~~~~l~~ 374 (450)
.+.+.|..
T Consensus 386 ~~~~~l~~ 393 (434)
T 2epj_A 386 KLHEEMLR 393 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777764
No 212
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.87 E-value=5.5e-21 Score=194.56 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=119.7
Q ss_pred CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc----CC----CEEEEeCCCchhHHHHHHHhCCC
Q 013079 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~----~g----d~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
.+..+...+++++++++.+ .+.++||+| |++|+..+++.+.. +| |+|++..+.|++...........
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~s---GseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDS---GAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---hHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 4556788999999999984 478999999 99999999988765 44 89999999998865332111000
Q ss_pred --------ccCeeEEEeCCCC----------------HHHHHHhhh--cCCceEEEEecCC-CCcccccC----HHHHHH
Q 013079 165 --------ACNITTTFVDISD----------------HEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSR 213 (450)
Q Consensus 165 --------~~g~~v~~v~~~d----------------~~~l~~ai~--~~~t~lv~i~~~~-NptG~v~~----l~~I~~ 213 (450)
.....+..++.++ +++|++++. .+++++|++++++ |++|.+.+ +++|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~ 239 (448)
T 3dod_A 160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE 239 (448)
T ss_dssp -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence 0011233344333 788999883 2567899999998 99998765 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHH
Q 013079 214 LAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 214 la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~ 274 (450)
+|++||+++|+||+|+++... ......|+++ ++|.+++ | .++ |++++++++++.+..
T Consensus 240 l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~-G~~~i-g~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 240 LCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITG-GYLPI-AVTFATEDIYKAFYD 304 (448)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCC-EEEEEEHHHHHTTCS
T ss_pred HHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccC-CcCce-EEEEECHHHHHHhhh
Confidence 999999999999998655321 1122356664 7899985 8 498 999999988887754
No 213
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.87 E-value=3.7e-21 Score=197.33 Aligned_cols=297 Identities=12% Similarity=0.135 Sum_probs=189.2
Q ss_pred CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhCCC
Q 013079 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~ 164 (450)
.+.++...+++++|+++.+ .+.++||+| |++|+..+++.+.. .++.||+..+.|++...........
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~s---GseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~ 169 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTG---GSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGR 169 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCC
Confidence 4567889999999999984 578999999 99999999988753 2568999999999865443211000
Q ss_pred --------ccCeeEEEeCCC--------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHH
Q 013079 165 --------ACNITTTFVDIS--------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR 213 (450)
Q Consensus 165 --------~~g~~v~~v~~~--------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~ 213 (450)
.....+.+++.. | +++|++++.. +++++|++++++|++|.+.+ +++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~ 249 (476)
T 3i5t_A 170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA 249 (476)
T ss_dssp GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 001123333321 1 7888888832 56889999999999998665 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCC--------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh------hh
Q 013079 214 LAHDKGVTVVVDNTFSPLVLS--------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QG 278 (450)
Q Consensus 214 la~~~gi~livD~~~~~~~~~--------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~ 278 (450)
+|+++|+++|+||+|+++... ......|+++ ++|.+++ | +++ |++++++++++.+.... ..
T Consensus 250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~ 325 (476)
T 3i5t_A 250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTN 325 (476)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECC
T ss_pred HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccc
Confidence 999999999999999665321 1122467775 7899995 7 898 89999999888775431 11
Q ss_pred hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079 279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 358 (450)
Q Consensus 279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 358 (450)
..+..++.+.+.++..++..++. +...++..++.+++.+.|+++.. .|... ...+.|.+++++
T Consensus 326 ~~t~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~v~~~G~~~~i~ 388 (476)
T 3i5t_A 326 GYTYSNQPVACAAALANIELMER-EGIVDQAREMADYFAAALASLRD---LPGVA-------------ETRSVGLVGCVQ 388 (476)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEE-------------EEEEETTEEEEE
T ss_pred cCCCCcCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEEecCceeEEE
Confidence 12233333333333333322211 22345566777788888875431 11110 112467799999
Q ss_pred eCCHH-----------HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---
Q 013079 359 METEE-----------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY--- 424 (450)
Q Consensus 359 l~~~~-----------~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~--- 424 (450)
+.... ....+.+.+.. .| +.+. + . .+.|||++.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G-v~v~----------~---------------~---g~~iRi~p~l~~t 436 (476)
T 3i5t_A 389 CLLDPTRADGTAEDKAFTLKIDERCFE---LG-LIVR----------P---------------L---GDLCVISPPLIIS 436 (476)
T ss_dssp ECCC-----CCHHHHHHHHHHHHHHHH---TT-EECE----------E---------------E---TTEEEECCCTTCC
T ss_pred EecCccccccccchhHHHHHHHHHHHH---CC-CEEE----------e---------------c---CCEEEEECCCCCC
Confidence 87321 24455565543 23 2211 1 1 2679999661
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCC
Q 013079 425 LGTLDQRWSQFEKALSRMQDSGV 447 (450)
Q Consensus 425 ~~~~~~~i~~l~~al~~~~~~~~ 447 (450)
.+++++.++.|.+++.++.+..+
T Consensus 437 ~e~i~~~l~~l~~~l~~~~~~~~ 459 (476)
T 3i5t_A 437 RAQIDEMVAIMRQAITEVSAAHG 459 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 25566667777777776655444
No 214
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.87 E-value=7.6e-21 Score=196.94 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=152.9
Q ss_pred hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc-------c-CCC------EEEEeCCCchhHHHHHHHhC
Q 013079 99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC-------S-SGG------HVVAARTLYGGTHALLTHFF 162 (450)
Q Consensus 99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~-------~-~gd------~Vi~~~~~y~~~~~~~~~~~ 162 (450)
...+++++.+++++|.+ .++||+| ||+|+.+++.++. + +|+ +|+++...|+++...+...
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~g---gtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~- 223 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPG---GSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL- 223 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESS---HHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCC---cHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc-
Confidence 34567788899999975 6899999 9999999988763 2 465 8999999999998877522
Q ss_pred CCccCe-eEEEeCCC-----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 163 PRACNI-TTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 163 ~~~~g~-~v~~v~~~-----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
. .|. +++.++.+ |+++|++++ ++ ++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.
T Consensus 224 g--~g~~~v~~v~~~~~~~~d~~~L~~~i-~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~ 300 (515)
T 2jis_A 224 G--LGTDSVRVVKADERGKMVPEDLERQI-GMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG 300 (515)
T ss_dssp T--SCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGG
T ss_pred C--CCCCcEEEEecCCCCcCCHHHHHHHH-HHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhh
Confidence 1 233 77888764 899999998 43 489999999999999999999999999999999999999943
Q ss_pred CCC--C-----ccCC-CCeEEEeCCCCccccCccceEEEEEcCHH--HHHHHH----HHhhhhhh------c-------c
Q 013079 231 LVL--S-----PARL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DLHQGALM------L-------L 283 (450)
Q Consensus 231 ~~~--~-----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~----~~~~~~~~------~-------~ 283 (450)
... + ...+ ++|+++.|+||+++++. .+ |+++.+++ +++... .+..+... . .
T Consensus 301 ~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~-G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 378 (515)
T 2jis_A 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QC-SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC 378 (515)
T ss_dssp GGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCS
T ss_pred HHHhChhhHhhcCCCccCCEEEECcccccCCCC-Ce-eEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCC
Confidence 322 1 1123 68999999999998553 25 77765544 555421 11100000 0 0
Q ss_pred CCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079 284 GPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLY 329 (450)
Q Consensus 284 g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~ 329 (450)
+-.......+..+. +.+.+.+..++..++++++.+.|++.+ +++..
T Consensus 379 ~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~ 427 (515)
T 2jis_A 379 GRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM 427 (515)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred CCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 00011222222222 223455667778889999999999874 35543
No 215
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.87 E-value=9.5e-21 Score=195.36 Aligned_cols=286 Identities=11% Similarity=0.056 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----c---------cC------CC-EEEEeCCCchhHHHHH
Q 013079 102 LNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----C---------SS------GG-HVVAARTLYGGTHALL 158 (450)
Q Consensus 102 ~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~---------~~------gd-~Vi~~~~~y~~~~~~~ 158 (450)
+++++.+++++|. +.++||+| ||+|+.+++.++ + .+ |+ +|+++.+.|.++...+
T Consensus 143 ~~~~~~la~~~g~~~~~~~~~t~g---gt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~ 219 (497)
T 2qma_A 143 QKVVNWLCDKYDLSEKADGIFTSG---GTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSA 219 (497)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESS---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCeEEcCC---chHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHH
Confidence 3446669999986 56899999 999999999873 3 12 46 7999999999988877
Q ss_pred HHhCCCccCe-eEEEeCCC-----CHHHHHHhhhcC---Cce--EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079 159 THFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG---RTK--VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 159 ~~~~~~~~g~-~v~~v~~~-----d~~~l~~ai~~~---~t~--lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~ 227 (450)
. .+. .|. +++.++.+ |+++|++++... .++ +|++++++|+||.+.|+++|+++|+++|+++|+|++
T Consensus 220 ~-~~g--~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a 296 (497)
T 2qma_A 220 S-WMG--LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGA 296 (497)
T ss_dssp H-HTT--SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred H-HcC--CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehh
Confidence 4 221 243 67777765 889999988321 244 888899999999999999999999999999999999
Q ss_pred CCCCC--CC----ccCC-CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhcc----CCC---------
Q 013079 228 FSPLV--LS----PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLL----GPT--------- 286 (450)
Q Consensus 228 ~~~~~--~~----~~~~-g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~----g~~--------- 286 (450)
|+... .+ ...+ ++|+++.|+||+++++. ++ |+++ .++..++.+..... +.... +..
T Consensus 297 ~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-~~-G~l~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~r 373 (497)
T 2qma_A 297 YGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI-SC-GALLVNDKSNFKFLLHHAD-YLNREHDELPNLVDKSIATTK 373 (497)
T ss_dssp TGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS-SC-EEEEESCGGGGGGGCC---------------------CCSC
T ss_pred hhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc-ce-EEEEEeCHHHHHHhcCCch-hcCCccccCCCccccCCCCCC
Confidence 94332 22 1122 67999999999888764 56 6665 45544433311000 00000 000
Q ss_pred -chHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079 287 -MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362 (450)
Q Consensus 287 -~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 362 (450)
......+..++ +.+.+...+++..++++++.+.|++.+ +++..+. .+++++|.+...
T Consensus 374 ~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v~f~~~~~ 434 (497)
T 2qma_A 374 RFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-------------------SLSTVLFRATHE 434 (497)
T ss_dssp CCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-------------------SSSEEEEEECCS
T ss_pred chhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-------------------CceEEEEEEcCC
Confidence 01122222233 223455677778889999999999874 3543332 245899998632
Q ss_pred -----HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHH
Q 013079 363 -----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFE 436 (450)
Q Consensus 363 -----~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~ 436 (450)
.....+.+.+... | +.+..+ .. .+ ..+.||||+ + ..++++.++.+.
T Consensus 435 ~~~~~~l~~~l~~~l~~~---G-~~~~~~----------~~------------~~-g~~~lRis~~~-~~~t~edi~~~~ 486 (497)
T 2qma_A 435 TADLDELNKALRLEALTR---G-IAVLGE----------TI------------VD-GKTALKFTILN-PCLTTSDFESLL 486 (497)
T ss_dssp SSCHHHHHHHHHHHHHHH---T-SCBCEE----------EE------------ET-TEEEEEEECCC-TTCCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC---C-CEEEEe----------eE------------EC-CEEEEEEEecC-CCCCHHHHHHHH
Confidence 1123444444431 2 111100 00 00 135799998 6 777777888877
Q ss_pred HHHHHhh
Q 013079 437 KALSRMQ 443 (450)
Q Consensus 437 ~al~~~~ 443 (450)
++|.++.
T Consensus 487 ~~l~~~~ 493 (497)
T 2qma_A 487 SKINMLA 493 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 216
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.87 E-value=3.5e-21 Score=196.23 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=150.4
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHH---hccCCCEEEEeCCCchhHHHHHHHhC------CCc
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRA 165 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~------~~~ 165 (450)
+..+..+++.+.+++.. +.+.++||+| |++|+.++++. +.. +++||+.++.|++......... +..
T Consensus 94 ~~~~~~~~la~~l~~~~~~~~~v~~~~g---g~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 169 (453)
T 2cy8_A 94 ASHPLEVRWAERIVAAFPSIRKLRFTGS---GTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPA 169 (453)
T ss_dssp SSCHHHHHHHHHHHHHCTTCSEEEEESC---HHHHHHHHHHHHHHHHC-CCEEEEECC----------------------
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcC
Confidence 35677888888888877 6788999999 99999999987 544 4789999999997654321100 111
Q ss_pred cCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079 166 CNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL 233 (450)
Q Consensus 166 ~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~ 233 (450)
.|+ .+..++..|+++|++++.+ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++..
T Consensus 170 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~ 249 (453)
T 2cy8_A 170 PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRV 249 (453)
T ss_dssp ------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccccc
Confidence 133 3455666799999999832 47889988888888999887 99999999999999999999976522
Q ss_pred Cc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH---Hh-hhhhhccCCCchHHHHHHHHcc-CCcH
Q 013079 234 SP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD---LH-QGALMLLGPTMNPKVAFELSER-IPHL 302 (450)
Q Consensus 234 ~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~---~~-~~~~~~~g~~~~~~~a~~~~~~-~~~l 302 (450)
.. .....|++ |++|.+++ |+++ |++++++++++.+.. .. ....+..++.+.+.++..++.. + .
T Consensus 250 g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~ 323 (453)
T 2cy8_A 250 GNHGMQALLDVQPDLT--CLAKASAG-GLPG-GILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E 323 (453)
T ss_dssp CTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--H
T ss_pred CchhhhHHhCCCCcEE--EEChhhhC-Ccce-EEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h
Confidence 11 12245765 68899996 8887 999999888776543 10 0011122333333333333322 2 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 303 GLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 303 ~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
+...++..++++++.+.|+++ +.....+ +.|.++++.++.
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~ 367 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAY-------------------GRFSGFHLMPGL 367 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-------------------CCTTEEEEEETS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEec
Confidence 234455666777777777653 3311111 357799999974
No 217
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.86 E-value=2.2e-20 Score=191.51 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=186.7
Q ss_pred CChhHHHHHHH----HHHHhCCC-----------eEEEecChHHHHHHHHHHHHHhcc-------------------CCC
Q 013079 97 FNPTVLNLSRQ----MAALEGTE-----------AAYCTASDKAGMSAISSVLMQLCS-------------------SGG 142 (450)
Q Consensus 97 ~~~~~~~l~~~----iA~l~g~~-----------~~~~tsg~~~gt~ai~~al~~l~~-------------------~gd 142 (450)
..|...++++. +++++|.+ ..+||+| ||+|+..++.+... +++
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~g---gt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGT---ASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCc---hHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 35666666655 57777765 4799999 99999998876521 235
Q ss_pred EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHHHH
Q 013079 143 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELS 212 (450)
Q Consensus 143 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~I~ 212 (450)
.|+++..+|.++...+. ..|.+++.++.+ |+++|+++| +++ +.+|+++.++|++|.+.|+++|+
T Consensus 184 ~vi~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i-~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~ 257 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAI-EQDVAEGLIPFYAVVTLGTTNSCAFDYLDECG 257 (475)
T ss_dssp EEEEETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEEECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHH-HHHHHCCCccEEEEEEecCCCCcCcCCHHHHH
Confidence 79999999999988875 368889898874 899999998 432 67888899999999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCC-CCCc----cCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHHhhhhhh--
Q 013079 213 RLAHDKGVTVVVDNTFSPL-VLSP----ARL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALM-- 281 (450)
Q Consensus 213 ~la~~~gi~livD~~~~~~-~~~~----~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~~~~-- 281 (450)
++|+++|+++|+|++|+.. ...+ ... .+|.++.|+||+++.|.. +|++++.++..+. .+.. ...+..
T Consensus 258 ~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~-~~~yl~~~ 335 (475)
T 3k40_A 258 PVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD-CSAMWLKDPSWVVNAFNV-DPLYLKHD 335 (475)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESSGGGC---------------
T ss_pred HHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc-eEEEEEeCHHHHHHHhcC-CccccCCC
Confidence 9999999999999999432 2211 111 369999999998876543 4344555554432 2211 000000
Q ss_pred ------------ccCC-CchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHh
Q 013079 282 ------------LLGP-TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA 345 (450)
Q Consensus 282 ------------~~g~-~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~ 345 (450)
..++ .......+.+++ +.+.+.++.++..++++++.+.|++.+ +++..|.
T Consensus 336 ~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-------------- 401 (475)
T 3k40_A 336 MQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-------------- 401 (475)
T ss_dssp -------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC--------------
T ss_pred cCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC--------------
Confidence 0001 011222222222 334566777888999999999999984 4554332
Q ss_pred ccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079 346 NKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 424 (450)
Q Consensus 346 ~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~ 424 (450)
..++++|.+++ ......+.+.|... |.+.++.+ .. . ....+||+++.
T Consensus 402 -----~~~iv~f~~~~~~~~~~~l~~~L~~~---g~~~~~~~----------~~------------~--g~~~lR~~~~~ 449 (475)
T 3k40_A 402 -----NMGLVCFRLKGSNERNEALLKRINGR---GHIHLVPA----------KI------------K--DVYFLRMAICS 449 (475)
T ss_dssp -----BTTEEEEEESSCHHHHHHHHHHHHHH---TSCBCEEE----------EE------------T--TEEEEEEECCC
T ss_pred -----ceEEEEEEeCCchHHHHHHHHHHHhC---CcEEEEee----------EE------------C--CEEEEEEEeCC
Confidence 23589999863 44456777777642 21222211 10 0 13679999872
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 013079 425 LGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 425 ~~~~~~~i~~l~~al~~~ 442 (450)
..++++.++.+.++|.++
T Consensus 450 ~~tt~~di~~~~~~i~~~ 467 (475)
T 3k40_A 450 RFTQSEDMEYSWKEVSAA 467 (475)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 334556666666555544
No 218
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.86 E-value=3.8e-21 Score=195.85 Aligned_cols=288 Identities=14% Similarity=0.143 Sum_probs=182.2
Q ss_pred CCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc---c-----------CCCEEEEeCCCchhHHHH
Q 013079 95 RHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC---S-----------SGGHVVAARTLYGGTHAL 157 (450)
Q Consensus 95 r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~---~-----------~gd~Vi~~~~~y~~~~~~ 157 (450)
++..+...++++.|+++++ .+.++||+| |++|++.+++.+. . +||+||+..+.|++....
T Consensus 97 ~~~~~~~~~la~~la~~~~~~~~~~v~~~~~---gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~ 173 (449)
T 2cjg_A 97 DVYSVAMARFVETFARVLGDPALPHLFFVEG---GALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGY 173 (449)
T ss_dssp TCCCHHHHHHHHHHHHHHCCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCc---hHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccc
Confidence 3566778999999999984 578999999 9999999997542 2 288999999999875432
Q ss_pred HHHh----------CCCccCeeEEEeCCCC--H-------------HHHHHhhh--cCCceEEEEecCCCCcccccC---
Q 013079 158 LTHF----------FPRACNITTTFVDISD--H-------------EMVNSAIV--QGRTKVLYFESISNPTLAVAN--- 207 (450)
Q Consensus 158 ~~~~----------~~~~~g~~v~~v~~~d--~-------------~~l~~ai~--~~~t~lv~i~~~~NptG~v~~--- 207 (450)
.... ... ....+.+++.+| . ++|++++. .+++++|++++++||+|.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~ 252 (449)
T 2cjg_A 174 TLSLTNTKPTITARFPK-FDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPE 252 (449)
T ss_dssp GGGTCCSCHHHHTTSCC-CCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHH
T ss_pred hhhhcCCchhhcccCCC-CCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHH
Confidence 1110 000 122566666555 2 33888773 267899999988999998776
Q ss_pred -HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH--H--
Q 013079 208 -IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--L-- 275 (450)
Q Consensus 208 -l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~--~-- 275 (450)
+++|.++|++||+++|+||+|+++... ......|++ |++|.+ ++ |++++++++++.+.. .
T Consensus 253 ~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~~~~~~~~~l~~~~~~~ 324 (449)
T 2cjg_A 253 FFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVMAGRRVDEVADNVFAVP 324 (449)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEEECGGGGGSTTCTTTST
T ss_pred HHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEEECHHHhhhhhhcccCC
Confidence 999999999999999999999655322 112346766 478988 46 888888887765221 0
Q ss_pred hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcE
Q 013079 276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGL 354 (450)
Q Consensus 276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~ 354 (450)
.....+..++.+.+.++..++..+.. ....++..++++++.+.|+++... +|. +. ...+.|.+
T Consensus 325 ~~~~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~~~-------------~~~~~g~~ 388 (449)
T 2cjg_A 325 SRLNSTWGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAAD--FPAVVL-------------DPRGRGLM 388 (449)
T ss_dssp TSSCCSSSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH--STTTSE-------------EEEEETTE
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh--CCCcee-------------eEeeccEE
Confidence 11111122333333333333322211 223455677778888888753100 111 00 00135779
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079 355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 434 (450)
Q Consensus 355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 434 (450)
++|+++.......+.+.|... | +.+..+ | .+.||||++ ...+++.++.
T Consensus 389 ~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g--~~~iRi~~~-~~~t~e~i~~ 436 (449)
T 2cjg_A 389 CAFSLPTTADRDELIRQLWQR---A-VIVLPA-------------------------G--ADTVRFRPP-LTVSTAEIDA 436 (449)
T ss_dssp EEEECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHH
T ss_pred EEEEECChHHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEEECC-CCCCHHHHHH
Confidence 999998654456777777542 3 333321 1 378999988 6666666666
Q ss_pred HHHHHHHh
Q 013079 435 FEKALSRM 442 (450)
Q Consensus 435 l~~al~~~ 442 (450)
+.++|.++
T Consensus 437 ~l~~l~~~ 444 (449)
T 2cjg_A 437 AIAAVRSA 444 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 219
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.4e-20 Score=190.40 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=190.6
Q ss_pred CChhHHHHHHHH----HHHhCCC------------eEEEecChHHHHHHHHHHHHHhcc-------------------CC
Q 013079 97 FNPTVLNLSRQM----AALEGTE------------AAYCTASDKAGMSAISSVLMQLCS-------------------SG 141 (450)
Q Consensus 97 ~~~~~~~l~~~i----A~l~g~~------------~~~~tsg~~~gt~ai~~al~~l~~-------------------~g 141 (450)
..|...++++.+ ++++|.+ ..+||+| ||+|+..++.+... ++
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~g---gt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~ 188 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQST---VSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCc---hHHHHHHHHHHHHHHHHHHhhhcCcccccccccCC
Confidence 356666666654 6667753 4599999 99999999876532 46
Q ss_pred CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHH
Q 013079 142 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPE 210 (450)
Q Consensus 142 d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~ 210 (450)
+.|+++...|.++...+. ..|.+++.++.+ |+++|+++| +++ +.+|+++.++|++|.+.|+++
T Consensus 189 ~~v~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~t~~G~id~l~~ 262 (481)
T 4e1o_A 189 LVAYASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAI-EEDKQRGLVPVFVCATLGTTGVCAFDCLSE 262 (481)
T ss_dssp EEEEEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred eEEEEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHH-HHHHhCCCCcEEEEEecCCCCCcCcCCHHH
Confidence 789999999999988874 357888888865 899999999 432 678888999999999999999
Q ss_pred HHHHHHhcCCEEEEeCCCCCC-CCCc----cCCC---CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhh-
Q 013079 211 LSRLAHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM- 281 (450)
Q Consensus 211 I~~la~~~gi~livD~~~~~~-~~~~----~~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~- 281 (450)
|+++|++||+++|+|++|+.. ...+ ...| +|.++.++||+++.|.. +|++++.++..+.........+..
T Consensus 263 I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~ 341 (481)
T 4e1o_A 263 LGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD-CTGFWVKDKYKLQQTFSVNPIYLRH 341 (481)
T ss_dssp HHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred HHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc-eEEEEEeCHHHHHHHhcCCchhccC
Confidence 999999999999999999432 2111 1113 59999999999887654 345556666554322111111100
Q ss_pred --------------ccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079 282 --------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM 344 (450)
Q Consensus 282 --------------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~ 344 (450)
..+........+.++. +.+.+.+++++..++++++.+.|++.+ +++..|.
T Consensus 342 ~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~------------- 408 (481)
T 4e1o_A 342 ANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR------------- 408 (481)
T ss_dssp TTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-------------
T ss_pred cccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------
Confidence 0111112233333222 345567778888999999999999874 3554332
Q ss_pred hccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079 345 ANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423 (450)
Q Consensus 345 ~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g 423 (450)
..++++|.+++ ......+.+.|... |.+.++.+ .. .....+|||++
T Consensus 409 ------~~~~v~f~~~~~~~~~~~l~~~L~~~---g~~~~~~~----------~~--------------~g~~~lR~~~~ 455 (481)
T 4e1o_A 409 ------HLGLVVFRLKGPNSLTENVLKEIAKA---GRLFLIPA----------TI--------------QDKLIIRFTVT 455 (481)
T ss_dssp ------CSSEEEEEESSCHHHHHHHHHHHHHH---CSSBCEEE----------EE--------------TTEEEEEEECC
T ss_pred ------ceeEEEEEeCCchHHHHHHHHHHHhC---CeEEEEee----------EE--------------CCEEEEEEEeC
Confidence 23489999963 44456777777642 21222211 00 01357999987
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 013079 424 YLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 424 ~~~~~~~~i~~l~~al~~~ 442 (450)
...++++.++.+.++|.++
T Consensus 456 ~~~tt~~di~~~~~~i~~~ 474 (481)
T 4e1o_A 456 SQFTTRDDILRDWNLIRDA 474 (481)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 2333566666666666554
No 220
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.86 E-value=1.4e-20 Score=190.30 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=154.3
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH---------HhCC
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT---------HFFP 163 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~---------~~~~ 163 (450)
+.++...++++++++++ +.+.++||+| |++|++++++.+. ..+++|++..+.|++...... ...+
T Consensus 90 ~~~~~~~~la~~l~~~~~~~~~v~~~~s---Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 166 (429)
T 4e77_A 90 APTEMEVKMAQLVTDLVPTMDMVRMVNS---GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP 166 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------C
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCc---HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCC
Confidence 35688899999999998 5678999999 9999999998543 356789999999988754210 0000
Q ss_pred CccC------eeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACN------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g------~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...+ ..+..++..|+++|++++.. +++++|+++++++++|.+.+ +++|.++|+++|+++|+||+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~ 246 (429)
T 4e77_A 167 NSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF 246 (429)
T ss_dssp CCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred CcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 0012 24455666799999999842 46788888887777888887 999999999999999999999755
Q ss_pred CCC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079 232 VLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 232 ~~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
... ......|++ |++|.++ +|+++ |++++++++++.+..... ...+..++.+.+.++..++..++. +
T Consensus 247 r~g~~~~~~~~~~~pdi~--t~sK~~~-~G~~~-G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 321 (429)
T 4e77_A 247 RVALAGAQDYYHVIPDLT--CLGKIIG-GGMPV-GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-V 321 (429)
T ss_dssp TTBTTCHHHHTTCCCSEE--EEEGGGG-TTSCC-EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-T
T ss_pred ccCcchHHHhcCCCCCee--eeccccc-CCCCe-EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 211 112235665 6889999 58998 899999988877653211 111122333333333333332211 2
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 304 LRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
...++..++.+++.+.|++ ++..... .+.|.++++.++.
T Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~ 364 (429)
T 4e77_A 322 GVYETLTELTDSLATGLRHAAKEENIPLVV-------------------NHVGGMFGLFFTN 364 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCEE-------------------EEETTEEEEECCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEE-------------------EEeeeEEEEEEcc
Confidence 2334445555555555544 3331111 1467899999874
No 221
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.86 E-value=6.5e-20 Score=195.55 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=151.5
Q ss_pred CChhHHHHHHHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH-HHHhCCCccCeeEEEeC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVD 174 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~v~~v~ 174 (450)
......++++.+|+++|++..++ ++| +++|+.+++.+++++||+|+++.++|.++... +. ..|.++++++
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nG---tt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~-----l~Ga~~v~v~ 242 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGG---SSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA-----MAGGRPVYLQ 242 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSH---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT-----TTCCEEEEEC
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCH---HHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHH-----HCCCEEEEEe
Confidence 34578999999999999988655 455 56999999999999999999999999998876 32 3688877765
Q ss_pred C----------CCHHHH-----HHhhhcCC------c----eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 175 I----------SDHEMV-----NSAIVQGR------T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 175 ~----------~d~~~l-----~~ai~~~~------t----~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
. .|+++| ++++ +++ + ++|++++| |++|.+.|+++|+++|+++|+++|+|++|+
T Consensus 243 ~~~~~~~i~g~id~e~L~~~~le~~i-~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~ 320 (730)
T 1c4k_A 243 TNRNPYGFIGGIYDSDFDEKKIRELA-AKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWV 320 (730)
T ss_dssp EEECTTCCEEEECGGGSCHHHHHHHT-TTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTC
T ss_pred CCccccCccCCCCHHHHhhhHHHHHh-hcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccc
Confidence 3 166666 8888 544 5 89999998 589999999999999999999999999983
Q ss_pred -CCCC-------CccCC---CCe----EEEeCCCCccccCccceEEEEEcC-HHH--------HHHHHHHhhhhhhccCC
Q 013079 230 -PLVL-------SPARL---GAD----VVVHSISKFISGGADIIAGAVCGP-ANL--------VNSMMDLHQGALMLLGP 285 (450)
Q Consensus 230 -~~~~-------~~~~~---g~d----i~~~S~sK~~g~~g~~igG~l~~~-~~~--------~~~l~~~~~~~~~~~g~ 285 (450)
.+.+ ++... ++| +++.|+||+++++. .||+++.+ +.+ ...+..... ......+
T Consensus 321 ~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~-~~~stsp 397 (730)
T 1c4k_A 321 GYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFN-LFMSTSP 397 (730)
T ss_dssp CGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHH-HHSCSSC
T ss_pred cccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHH-HhCCCCC
Confidence 3222 22333 777 99999999988654 34677432 221 122222211 1001122
Q ss_pred CchHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013079 286 TMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKK-L-GLKVLYP 330 (450)
Q Consensus 286 ~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p 330 (450)
.....++.. +...+. ...++.++..++++++++.|++ . ++++..|
T Consensus 398 ~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 398 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 222222211 111122 2355677788888999999988 3 4565444
No 222
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.86 E-value=2.2e-20 Score=189.56 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=183.5
Q ss_pred ChhHHHHHHHHHHHhCCCeE--EEecChHHHHHHHHHHHHH-hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079 98 NPTVLNLSRQMAALEGTEAA--YCTASDKAGMSAISSVLMQ-LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~~~--~~tsg~~~gt~ai~~al~~-l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~ 174 (450)
.+..+++++.+++++|.+.. ++|+| ++.++++++.+ ..++||+|+++.++|+++...+...... .|+++++++
T Consensus 107 ~~~~~~~~~~la~~~g~~~~~i~~~~g---~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~ 182 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIANASMYDG---ATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEECSCBSSH---HHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCccceEEeCc---HHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEc
Confidence 35678999999999998754 78999 88443333332 2478999999999999998777543332 688998887
Q ss_pred CC----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC---CCCCCCCccCCCCeEEEeCC
Q 013079 175 IS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT---FSPLVLSPARLGADVVVHSI 247 (450)
Q Consensus 175 ~~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~---~~~~~~~~~~~g~di~~~S~ 247 (450)
.. |+++ + +++|++|++++| ||||.+.|+++|+++|+++|+++|+|.. ++.+ ..+..+++|++++|.
T Consensus 183 ~~~~~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-~~~~~~g~D~~~~s~ 255 (438)
T 1wyu_A 183 LEGGRTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-KPPGAYGADIAVGDG 255 (438)
T ss_dssp CBTTBCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-CCHHHHTCSEEEEEC
T ss_pred CcCCccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-CCCccCCCCEEEECC
Confidence 53 3333 6 678999999999 9999999999999999999999996633 3332 233456899999995
Q ss_pred CC-----ccccCccceEEEEEcCHHHHHHHHHHhhh--------------------h-hhccCCC----chHHHHHHH--
Q 013079 248 SK-----FISGGADIIAGAVCGPANLVNSMMDLHQG--------------------A-LMLLGPT----MNPKVAFEL-- 295 (450)
Q Consensus 248 sK-----~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------------------~-~~~~g~~----~~~~~a~~~-- 295 (450)
+| +++++ ++ |+++.++++++.+.....+ . ....+.. .....+..+
T Consensus 256 kk~~~~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~ 332 (438)
T 1wyu_A 256 QSLGLPMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAM 332 (438)
T ss_dssp TTTTCCCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHH
T ss_pred cccCCCccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHH
Confidence 55 33334 45 8998888776554211000 0 0001111 122222111
Q ss_pred -Hc--cCCcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013079 296 -SE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 371 (450)
Q Consensus 296 -~~--~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~ 371 (450)
+. ..+.+.+..++..++++++.+.|+++ ++++..|. + .-.++.|.++. ....+.+.
T Consensus 333 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~--------------~~~~~~~~~~~--~~~~~~~~ 392 (438)
T 1wyu_A 333 YLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRA 392 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----C--------------eEEEEEEeCCC--CHHHHHHH
Confidence 11 11235556667788899999999987 55654432 0 11245566541 24566666
Q ss_pred hhcccccccccc--ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079 372 LQNYAQFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442 (450)
Q Consensus 372 l~~~~~~g~i~v--s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 442 (450)
|... | +.+ ..|..+ +++.||||++ ..++++.++.+.++|.++
T Consensus 393 L~~~---g-i~v~~~~~~~~------------------------~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 393 LAER---G-FHGATPVPREY------------------------GENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp HHHT---T-CCCCEECCTTS------------------------CSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHC---C-ceecccccccc------------------------CCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 6642 2 444 223111 1478999999 888888889988888765
No 223
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.86 E-value=3e-21 Score=195.10 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHH---------hCCC
Q 013079 97 FNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPR 164 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~ 164 (450)
..+...++++++++++ +.+.++||+| |++|+.++++... ..+++||+..+.|++....... ..+.
T Consensus 90 ~~~~~~~la~~l~~~~~~~~~v~~~~g---gsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 166 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVPSIEMVRFVNS---GTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS 166 (427)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC
Confidence 6788899999999998 4678999999 9999999995432 3357899999999864322100 0011
Q ss_pred ccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079 165 ACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV 232 (450)
Q Consensus 165 ~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~ 232 (450)
..|+ .+..++..|+++|++++.. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~ 246 (427)
T 3fq8_A 167 SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFR 246 (427)
T ss_dssp CSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT
T ss_pred CCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 0121 2555666799999999833 27899999999999999988 9999999999999999999997651
Q ss_pred CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHHH
Q 013079 233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL 304 (450)
Q Consensus 233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~ 304 (450)
.. ......|++ |+||.++ +|+|+ |++++++++++.+..... ...+..++.+.+.++..++..++. +.
T Consensus 247 ~g~~~~~~~~~~~~di~--t~sK~~~-~G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~ 321 (427)
T 3fq8_A 247 IAYGGVQEKFGVTPDLT--TLGKIIG-GGLPV-GAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PG 321 (427)
T ss_dssp TBTTHHHHHTTCCCSEE--EECGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TT
T ss_pred cCcchhhHhcCCCCChh--hhhhhhh-CCcce-EEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cC
Confidence 11 112235665 5779999 58998 999999988877653211 011122233333333333322211 22
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013079 305 RMKEHCHRALIFARRMKK 322 (450)
Q Consensus 305 ~~~~~~~~~~~l~~~L~~ 322 (450)
..++..++++++.+.|++
T Consensus 322 ~~~~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLA 339 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555666666654
No 224
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.85 E-value=2.5e-20 Score=187.27 Aligned_cols=223 Identities=14% Similarity=0.084 Sum_probs=147.0
Q ss_pred ccccCCCChhHHHHHHHHHHHh-CC----C--eEEEecChHHHHHHHHHHHHHh----ccCCCEEEEeCCCchhHHHHHH
Q 013079 91 FIYSRHFNPTVLNLSRQMAALE-GT----E--AAYCTASDKAGMSAISSVLMQL----CSSGGHVVAARTLYGGTHALLT 159 (450)
Q Consensus 91 ~~y~r~~~~~~~~l~~~iA~l~-g~----~--~~~~tsg~~~gt~ai~~al~~l----~~~gd~Vi~~~~~y~~~~~~~~ 159 (450)
|.|.- .....+|++.+++++ |. + ..+-|.| ||.|+..++..+ +.+||+|++++|.|+.+...+.
T Consensus 81 ~~Y~p--~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~g---gtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~ 155 (420)
T 4h51_A 81 YEYLP--ISGYQPFIDEAVKIIYGNTVELENLVAVQTLS---GTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVK 155 (420)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHC---CGGGEEEEEEEH---HHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHH
T ss_pred CCCCC--cCChHHHHHHHHHHhcCCCccccccceeeecC---chHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHH
Confidence 55652 334566788888864 32 1 2366889 999888777654 4689999999999999988886
Q ss_pred HhCCCccCee-EEEe---CCC----CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeC
Q 013079 160 HFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDN 226 (450)
Q Consensus 160 ~~~~~~~g~~-v~~v---~~~----d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~ 226 (450)
. .|.+ +... +.. |.+.+.+.+. .++++++++.+||||||.+.+ +++|+++|+++++++++|+
T Consensus 156 ~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~ 230 (420)
T 4h51_A 156 A-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDS 230 (420)
T ss_dssp H-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred H-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeeh
Confidence 2 4543 3222 211 6677666652 467888888999999999964 7799999999999999999
Q ss_pred CCCCCCCCcc------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH-------HHHHhhhhhhccCCCc
Q 013079 227 TFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-------MMDLHQGALMLLGPTM 287 (450)
Q Consensus 227 ~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-------l~~~~~~~~~~~g~~~ 287 (450)
+|.++.+... .....+++.|+||.++++|+|+ ||++.+....+. +..... ......+..
T Consensus 231 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~r-~~~s~~p~~ 308 (420)
T 4h51_A 231 AYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSLLLKDKTKRADVKSVMDSLIR-EEYTCPPAH 308 (420)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSCHHHHHHHHHHHHHHHH-TTTSSCCHH
T ss_pred hhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEecccCHHHHHHHHHHHHHhhh-cccCcchHH
Confidence 9977754311 1135688999999999999999 888654333222 222222 111222223
Q ss_pred hHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079 288 NPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 325 (450)
Q Consensus 288 ~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~ 325 (450)
.+..+...+.. .+++....+++.++|+.|.+.|++.+.
T Consensus 309 ~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 309 GARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333222 112334455678889999999988753
No 225
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.85 E-value=1.1e-20 Score=190.77 Aligned_cols=252 Identities=17% Similarity=0.174 Sum_probs=165.5
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHH--hccCCCEEEEeCCCchhHHHHHHHhC---------C
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQ--LCSSGGHVVAARTLYGGTHALLTHFF---------P 163 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~--l~~~gd~Vi~~~~~y~~~~~~~~~~~---------~ 163 (450)
+..+...++++.+++++ +.+.++||+| |++|+.++++. .+..++.||+.++.|+++........ +
T Consensus 89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~---g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 165 (424)
T 2e7u_A 89 APSPLEVALAKKVKRAYPFVDLVRFVNS---GTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVP 165 (424)
T ss_dssp SCCHHHHHHHHHHHHHCTTCCEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence 45677899999999999 6788999999 99999999985 23345789999999987543221000 0
Q ss_pred CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...|+ .+..++..|+++|++++.+ +++++|++++.++++|.+.+ +++|.++ ++||+++|+||+|+++
T Consensus 166 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~ 244 (424)
T 2e7u_A 166 SSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF 244 (424)
T ss_dssp SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT
T ss_pred CCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc
Confidence 01232 3555666799999998832 46778888776667998887 9999999 9999999999999766
Q ss_pred CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079 232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 303 (450)
Q Consensus 232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 303 (450)
.... .....|++ |++|.+++ |+++ |++++++++++.+..... ...+..++.+.+.++..++..++..+
T Consensus 245 ~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 320 (424)
T 2e7u_A 245 RLAFGGATELLGLKPDLV--TLGKILGG-GLPA-AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP 320 (424)
T ss_dssp TSSTTHHHHHHTCCCSEE--EECGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred ccchhHHHHHhCCCcchh--hhhhhhhC-Ccce-EEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3211 11235765 78999995 8898 999999888876643111 01112222233333323332221113
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHH
Q 013079 304 LRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKAN 366 (450)
Q Consensus 304 ~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~ 366 (450)
...++..++++++.+.|+++ +.....+ +.|.++++.++. .....
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVN-------------------RVGSMITVFFTEGPVVTFQDARRTDTELFK 381 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-------------------eeceEEEEEEeCCCCcchhhhcccCHHHHH
Confidence 34556677777888877653 3311111 357799999864 23355
Q ss_pred HHHHHhhc
Q 013079 367 RLMNYLQN 374 (450)
Q Consensus 367 ~~~~~l~~ 374 (450)
.+.+.|..
T Consensus 382 ~~~~~l~~ 389 (424)
T 2e7u_A 382 RFFHGLLD 389 (424)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 67777654
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.83 E-value=5.1e-19 Score=190.20 Aligned_cols=214 Identities=13% Similarity=0.066 Sum_probs=148.6
Q ss_pred CChhHHHHHHHHHHHhCCCeEE-EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAY-CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~-~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
....+..+++.+++++|.+..+ +++| +++|+.+++.+++++||+|++++++|.++...+. ..|.++++++.
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~G---tt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~ 274 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVG---TSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVP 274 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSH---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECC
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCc---HHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeC
Confidence 3456889999999999998765 4555 5789999999999999999999999999888764 25788888764
Q ss_pred C---------------CHHHHHHhhhc-CCce--------EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-C
Q 013079 176 S---------------DHEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P 230 (450)
Q Consensus 176 ~---------------d~~~l~~ai~~-~~t~--------lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~ 230 (450)
+ |+++|++++.. ++++ +|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 2 79999999843 2454 8889988 799999999999999999999999999984 3
Q ss_pred CCCC-------ccCCC--CeE------EEeCCCCccccCccceEEEEEcCHH---H-HHHHHHHhhhhhhccCCCchHHH
Q 013079 231 LVLS-------PARLG--ADV------VVHSISKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKV 291 (450)
Q Consensus 231 ~~~~-------~~~~g--~di------~~~S~sK~~g~~g~~igG~l~~~~~---~-~~~l~~~~~~~~~~~g~~~~~~~ 291 (450)
+.+. +. .+ +|+ ++.|+||+++++. .||+++.+++ + ...+....... ....+.....+
T Consensus 354 ~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~-~s~sp~~~~ia 429 (755)
T 2vyc_A 354 ARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMH-ATTSPLYAICA 429 (755)
T ss_dssp GGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHT-SCSSCCHHHHH
T ss_pred cccCcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHh-CCCCHHHHHHH
Confidence 2222 22 45 676 9999999988654 3477755432 1 12232221100 01112221122
Q ss_pred HHH-HHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013079 292 AFE-LSERIPH--LGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 292 a~~-~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
+.. +...+.. ...+.++..++.+++++.|+++
T Consensus 430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l 464 (755)
T 2vyc_A 430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_dssp HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 2222222 3456677788888888888764
No 227
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.71 E-value=6.7e-22 Score=201.06 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=163.7
Q ss_pred CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCe--eE
Q 013079 96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI--TT 170 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~v 170 (450)
+.++...+|+++|++++ +.+.++|++| |++|+..+++.+. ..+++||+.+..|++...... ..+...|+ .+
T Consensus 137 ~~~~~~~~Lae~L~~~~p~~~~v~~~nS---GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~ 212 (465)
T 2yky_A 137 TQTENEALFAEAVCDRFPSIDLVRFTNS---GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHV 212 (465)
Confidence 45677889999999998 6788999999 9999999998642 345899999999988654321 00111344 34
Q ss_pred EEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cCCC-
Q 013079 171 TFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----ARLG- 239 (450)
Q Consensus 171 ~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----~~~g- 239 (450)
..++..|+++|++++.+ +++++|++++++|++|.+.+ +++|.++|+++|+++|+||+|+ +.... ...+
T Consensus 213 ~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv 291 (465)
T 2yky_A 213 VLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGI 291 (465)
Confidence 44555689999998832 68999999988888998876 9999999999999999999998 53211 1113
Q ss_pred -CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH--h--hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079 240 -ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 314 (450)
Q Consensus 240 -~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 314 (450)
.|++ |++|.+|+ |+++ ||+++++++++.+... . ....+..++.+.+.++...+..++. ....++..++.+
T Consensus 292 ~pDi~--t~sK~lg~-G~pi-G~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~ 366 (465)
T 2yky_A 292 SADLT--TLGKYIGG-GMSF-GAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGD 366 (465)
Confidence 4554 69999997 8998 9999999988877651 1 1112234444444444444433322 234455566677
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079 315 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361 (450)
Q Consensus 315 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 361 (450)
++.+.|++...+...+. ...+.|.+++|.+.+
T Consensus 367 ~l~~~L~~~~~~~~~~~---------------~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 367 RFRANLNRIAVENQAPL---------------QFTGLGSLGTIHFSR 398 (465)
Confidence 77777765421111111 112578899998864
No 228
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.79 E-value=1e-18 Score=178.98 Aligned_cols=283 Identities=16% Similarity=0.165 Sum_probs=171.5
Q ss_pred ChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc-------c------------------CC---CEEEEe
Q 013079 98 NPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC-------S------------------SG---GHVVAA 147 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~-------~------------------~g---d~Vi~~ 147 (450)
.+..+++++.|+++. +.+.++||+| |++|+..+++.+. + +| ++||+.
T Consensus 109 ~~l~~~la~~l~~~~~~~~~~v~f~~s---GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~ 185 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGMSQLITMAC---GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 185 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCcCEEEEeCC---chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEE
Confidence 344555565566665 5678999999 9999999998763 1 35 899999
Q ss_pred CCCchhHHHHHHHhCCC----ccCe-----eEEEeCC-----------------CCHHHHHHhhhcC------CceEEEE
Q 013079 148 RTLYGGTHALLTHFFPR----ACNI-----TTTFVDI-----------------SDHEMVNSAIVQG------RTKVLYF 195 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~----~~g~-----~v~~v~~-----------------~d~~~l~~ai~~~------~t~lv~i 195 (450)
++.|++........... ..+. ....++. .|+++|++++ ++ ++++|++
T Consensus 186 ~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~viv 264 (472)
T 1ohv_A 186 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLI-VKYRKKKKTVAGIIV 264 (472)
T ss_dssp TTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEEEE
T ss_pred CCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHH-HhcCCCCCCEEEEEE
Confidence 99998855433211110 0011 1111110 1578888888 44 7999999
Q ss_pred ecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCC----CeEEEeCCCCcc-ccCccceEEE
Q 013079 196 ESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLG----ADVVVHSISKFI-SGGADIIAGA 261 (450)
Q Consensus 196 ~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g----~di~~~S~sK~~-g~~g~~igG~ 261 (450)
++++|++|.+.+ +++|.++|+++|+++|+||+|+++... ...++ +|++ |++|.+ + ||+
T Consensus 265 e~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~ 336 (472)
T 1ohv_A 265 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGF 336 (472)
T ss_dssp CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEE
T ss_pred cCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCc
Confidence 999999999887 999999999999999999999654332 11224 6776 577994 4 367
Q ss_pred EEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHH
Q 013079 262 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHEL 340 (450)
Q Consensus 262 l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l 340 (450)
++ ++++. .+..... ..+..++.+.+.++..++..+.. ....++..++++++.+.|+++... +|. +.
T Consensus 337 ~~-~~~~~-~~~~~~~-~~T~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~v~------- 403 (472)
T 1ohv_A 337 FH-KEEFR-PNAPYRI-FNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR--YPQFIS------- 403 (472)
T ss_dssp EE-CGGGS-CSSSSSS-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTTCE-------
T ss_pred cC-chhhc-ccccccc-cCccCccHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhh--CCCcEE-------
Confidence 66 55542 1111111 11122333333333333322111 123455677777888877654110 111 00
Q ss_pred HHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013079 341 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420 (450)
Q Consensus 341 ~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRi 420 (450)
...+.|.+++|++++......+...|... | +.+..+ | .+.|||
T Consensus 404 ------~~~~~g~~~~~~~~~~~~~~~~~~~l~~~---G-v~~~~~-------------------------g--~~~iRi 446 (472)
T 1ohv_A 404 ------RVRGRGTFCSFDTPDESIRNKLISIARNK---G-VMLGGC-------------------------G--DKSIRF 446 (472)
T ss_dssp ------EEEEETTEEEEECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEE
T ss_pred ------eecCCceEEEEEeCChhHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEE
Confidence 01145779999987644466777777542 2 222211 1 368999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHhh
Q 013079 421 SVGYLGTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 421 S~g~~~~~~~~i~~l~~al~~~~ 443 (450)
|++ ...+++.++.+.++|.++.
T Consensus 447 ~~~-~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 447 RPT-LVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp CCC-TTCCHHHHHHHHHHHHHHH
T ss_pred ECC-CCCCHHHHHHHHHHHHHHH
Confidence 999 8777887888777776654
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.73 E-value=7.6e-17 Score=170.71 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=148.5
Q ss_pred CChhHHHHHHHHHHHhCCCeEEEecChHHH-HHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079 97 FNPTVLNLSRQMAALEGTEAAYCTASDKAG-MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~g-t~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~ 175 (450)
....+.++++.+|+++|++.++|+++ | +.||.+++.+++++||+|++++++|.++...+. +.|.++++++.
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~n---Gts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~ 264 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTN---GTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRP 264 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECC
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECc---HHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence 44578999999999999999877666 6 699999999999999999999999999988764 36888888874
Q ss_pred C---------------CHHHHHHhhhc-CCce---EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC--
Q 013079 176 S---------------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL-- 233 (450)
Q Consensus 176 ~---------------d~~~l~~ai~~-~~t~---lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~-- 233 (450)
. |+++|++++.. ++++ +|++++| |++|.+.|+++|+++|+.++ +++|++|+ ++.+
T Consensus 265 ~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 265 TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp CBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred cccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence 2 79999999943 3445 8899999 99999999999999998764 79999983 3322
Q ss_pred -----CccCCC--CeEE---EeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhhhhccCCCchHHHHHH-HHccCC-
Q 013079 234 -----SPARLG--ADVV---VHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFE-LSERIP- 300 (450)
Q Consensus 234 -----~~~~~g--~di~---~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~~- 300 (450)
+....+ +|++ ++|+||.+++.. .||++..+.++ ...+..... ....+.+.....++.. +.+.++
T Consensus 342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~-~~~STSpsy~~~AsldaA~~~~~~ 418 (715)
T 3n75_A 342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYM-MHTTTSPHYGIVASTETAAAMMKG 418 (715)
T ss_dssp GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHH-HTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred ccccccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHH-hhcCCCchHHHHHHHHHHHHHHHh
Confidence 222223 5655 999999998642 24777654432 223332222 1112222222222222 222222
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhC
Q 013079 301 -HLGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 301 -~l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
.-.++.++..++.+++++.|+++
T Consensus 419 ~~g~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 419 NAGKRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHh
Confidence 23445667778888888888765
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.68 E-value=3e-16 Score=158.44 Aligned_cols=240 Identities=16% Similarity=0.143 Sum_probs=157.7
Q ss_pred ChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH-HhCCCccCeeEEEe
Q 013079 98 NPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT-HFFPRACNITTTFV 173 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~-~~~~~~~g~~v~~v 173 (450)
++...++.+.|++.+ +.+.++|++| |+||+..+++... ...++|+....+|++...... ...+.........+
T Consensus 126 ~~~~~~lae~l~~~~p~~~~v~f~~S---GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~ 202 (454)
T 4ao9_A 126 NLLEGRLARLICERFPQIEQLRFTNS---GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL 202 (454)
T ss_dssp ESSHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEeCc---hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC
Confidence 345567888888877 4578999999 9999999998653 234689999999987432210 00011112345566
Q ss_pred CCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCC-CCC----CccCCCCeE
Q 013079 174 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSP-LVL----SPARLGADV 242 (450)
Q Consensus 174 ~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~-~~~----~~~~~g~di 242 (450)
+.+|++.+++.+++ +++.+|++|.+.+..|.+.| +++|.++|++||+++|+||++++ ... ....+..|+
T Consensus 203 p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi 282 (454)
T 4ao9_A 203 PYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDL 282 (454)
T ss_dssp CTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSE
T ss_pred CCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcE
Confidence 77899999998843 46889999999999999877 99999999999999999999942 111 112234688
Q ss_pred EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh---hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 319 (450)
Q Consensus 243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 319 (450)
++ ++|.+|+ |.++ |++++++++++.+..... +..+..|+.+...++...+..++. +...++..++.++|.+.
T Consensus 283 ~t--~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 283 TT--LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRAR 357 (454)
T ss_dssp EE--EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred EE--eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHH
Confidence 87 8999984 6788 888899888876643211 112234444444444444444443 33445556666677777
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079 320 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360 (450)
Q Consensus 320 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 360 (450)
|+++..+...+. +.+|.|.++.++|.
T Consensus 358 L~~l~~~~~~~~---------------~vrg~G~m~gi~f~ 383 (454)
T 4ao9_A 358 LNALCANEGVAM---------------QFTGIGSLMNAHFV 383 (454)
T ss_dssp HHHHHHHHTBSC---------------EEEEETTEEEEESC
T ss_pred HHHHHhhCCCCE---------------EEeeeceEEEEEEe
Confidence 655311100111 12367889999874
No 231
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.66 E-value=1e-14 Score=147.75 Aligned_cols=255 Identities=16% Similarity=0.160 Sum_probs=153.9
Q ss_pred CChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC------C-
Q 013079 97 FNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------R- 164 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~- 164 (450)
.++...++.++|+++.. .+.++|++| |+||+..|++... ...++|+.....||+.......... .
T Consensus 105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~s---GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~ 181 (456)
T 4atq_A 105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNS---GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTN 181 (456)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTT
T ss_pred CcHHHHHHHHHHHHhCCCCCCcEEEEeCC---hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccC
Confidence 35566778889999875 356899999 9999999997542 2346899999999885432211100 0
Q ss_pred --ccCeeEEEeCCC-----------CHHHHHH-------hhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCC
Q 013079 165 --ACNITTTFVDIS-----------DHEMVNS-------AIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 220 (450)
Q Consensus 165 --~~g~~v~~v~~~-----------d~~~l~~-------ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi 220 (450)
.....+..++.. +.+.+++ .+..+++.+|++|.++...|.+.+ +++|.++|++||+
T Consensus 182 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gi 261 (456)
T 4atq_A 182 FGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGI 261 (456)
T ss_dssp SCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCC
Confidence 011234444432 2333322 222346889999999998898854 9999999999999
Q ss_pred EEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079 221 TVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 293 (450)
Q Consensus 221 ~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~ 293 (450)
++|+||+++++.. ....+..|+++ ++|.+| .|.++ |++++++++++.+..... ..++.|+.+...++.
T Consensus 262 llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg-gg~P~-~av~~~~~i~~~~~~~~~-~~Tf~gnpla~aaal 336 (456)
T 4atq_A 262 VFIADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIA-GGLPL-SAITGRADLLDAVHPGGL-GGTYGGNPVACAAAL 336 (456)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGG-TTSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHH
T ss_pred ceEecccccccCCccccccccccCCCCchhh--hhhccc-CcCCc-eeeEecHHHHhcccccCC-CCCCCCChHHHHhhH
Confidence 9999999966531 12223579988 789988 56788 888888888776643322 223444444444444
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CH
Q 013079 294 ELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TE 362 (450)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~ 362 (450)
..+..++. +...++..+..+++.+.|+++ +.. ..|. ..+.+|.|.++.|++. ..
T Consensus 337 a~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~-------------v~~VRG~Gl~~giel~~~~~~~~~~ 401 (456)
T 4atq_A 337 AAIDTMEQ-HDLNGRARHIEELALGKLRELAAELSAG-GGSV-------------VGDIRGRGAMLAIELVQPGSKEPNA 401 (456)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCC------C-------------EEEEEEETTEEEEEEBCTTSCCBCH
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhcccc-cCCc-------------eEEeeecceEEEEEEecCCCCCcCH
Confidence 43332211 012233334444555555432 210 0010 0133478999999984 33
Q ss_pred HHHHHHHHHhhc
Q 013079 363 EKANRLMNYLQN 374 (450)
Q Consensus 363 ~~~~~~~~~l~~ 374 (450)
+.+..+...+..
T Consensus 402 ~~~~~v~~~~~~ 413 (456)
T 4atq_A 402 ELTKAVAAACLK 413 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445566666654
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.65 E-value=2.9e-14 Score=145.01 Aligned_cols=290 Identities=15% Similarity=0.209 Sum_probs=176.1
Q ss_pred CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc-------cCC-CEEEEeCCCchhHHHH-HH------
Q 013079 97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHAL-LT------ 159 (450)
Q Consensus 97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~-~~------ 159 (450)
.++...+|.++|+++.. .+.++|++| |+||+..|++... +++ .+||.....||+.... +.
T Consensus 109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~s---GsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~ 185 (473)
T 4e3q_A 109 MSDQTVMLSEKLVEVSPFDSGRVFYTNS---GSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY 185 (473)
T ss_dssp EEHHHHHHHHHHHHHSSCSSCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred cCHHHHHHHHHHHhhCCCCccEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence 35667788899999885 468999999 9999999998542 122 4788888898874322 21
Q ss_pred --HhCCCccCeeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHH
Q 013079 160 --HFFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELS 212 (450)
Q Consensus 160 --~~~~~~~g~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~ 212 (450)
.+.....+ ...++.. ..+++++.+. .+++.+|++|.++...|.+.+ +++|.
T Consensus 186 ~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr 263 (473)
T 4e3q_A 186 NSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL 263 (473)
T ss_dssp GGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred ccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHH
Confidence 01111112 2222221 1234444442 246789999999998898854 99999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh------hh
Q 013079 213 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GA 279 (450)
Q Consensus 213 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~ 279 (450)
++|+++|+++|+||+++++... ......|+++ ++|.+++.+.++ |+++.++++.+.+..... +.
T Consensus 264 ~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg 340 (473)
T 4e3q_A 264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHG 340 (473)
T ss_dssp HHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred HHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCCc-ccccccHHHHHHhccccccccccccC
Confidence 9999999999999999776421 1223578888 899999766888 888889899887754321 12
Q ss_pred hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079 280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 359 (450)
Q Consensus 280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 359 (450)
.++.|+.+...++...+..++. +...++..+..++|.+.|+++.. .|.+. +.+|.|.++.+++
T Consensus 341 ~T~~Gnpla~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vRG~Gl~~giel 403 (473)
T 4e3q_A 341 FTASGHPVGCAIALKAIDVVMN-EGLAENVRRLAPRFEERLKHIAE---RPNIG-------------EYRGIGFMWALEA 403 (473)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHTT---STTEE-------------EEEEETTEEEEEE
T ss_pred CCCCCCcchhhhhhhhhhhhcc-ccHHHHHHHHHHHHHHHHHHHhc---CCCee-------------EEeecceEEEEEE
Confidence 2233443333333333322211 11233445556667777765421 11110 2337888999997
Q ss_pred CC-----------HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---C
Q 013079 360 ET-----------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---L 425 (450)
Q Consensus 360 ~~-----------~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~ 425 (450)
.. .....++...+.. .|++....| +.|||+..+ .
T Consensus 404 v~~~~~~~~~~~~~~~~~~~~~~~~~---~Gll~~~~g-----------------------------~~i~l~PPL~it~ 451 (473)
T 4e3q_A 404 VKDKASKTPFDGNLSVSERIANTCTD---LGLICRPLG-----------------------------QSVVLCPPFILTE 451 (473)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHH---TTEECEEET-----------------------------TEEEECCCTTCCH
T ss_pred ecCccccccccccHHHHHHHHHHHHH---CCcEEEecC-----------------------------CEEEEeCCCCCCH
Confidence 41 1124455555543 233322222 346665441 3
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 013079 426 GTLDQRWSQFEKALSRMQ 443 (450)
Q Consensus 426 ~~~~~~i~~l~~al~~~~ 443 (450)
+++++.++.|.++|+++.
T Consensus 452 ~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 452 AQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777788888887764
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.65 E-value=4.7e-15 Score=146.73 Aligned_cols=193 Identities=11% Similarity=0.105 Sum_probs=135.1
Q ss_pred eEEEecChHHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC--------CHHHHHH
Q 013079 116 AAYCTASDKAGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNS 183 (450)
Q Consensus 116 ~~~~tsg~~~gt~ai~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~--------d~~~l~~ 183 (450)
..++++| +|.++.+++.+.+++ +|.||+++..|.++...+. +.|.+++++++. |++++++
T Consensus 136 ~~flVnG---sTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli-----L~Gl~Pv~V~p~~d~~~~~id~e~le~ 207 (501)
T 3hl2_A 136 NCFVVPM---ATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI-----TAGFEPVVIENVLEGDELRTDLKAVEA 207 (501)
T ss_dssp EEEEESS---CHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECEEEETTEEEECHHHHHH
T ss_pred cEEEECc---HHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH-----HcCCeEEEEeeeecccccCCCHHHHHH
Confidence 4688999 998888888777764 4999999999999998885 478888888752 8999999
Q ss_pred hhhcC--Cce-EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC------CccCCC-CeEEEeCCCCccc
Q 013079 184 AIVQG--RTK-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL------SPARLG-ADVVVHSISKFIS 252 (450)
Q Consensus 184 ai~~~--~t~-lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~------~~~~~g-~di~~~S~sK~~g 252 (450)
+|++. +.. +|+.++++|..+.+.|+++|+++|++||+++|||++| .++.+ +..++| +|+++.|.||.+-
T Consensus 208 aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~ll 287 (501)
T 3hl2_A 208 KVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFM 287 (501)
T ss_dssp HHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHC
T ss_pred HHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccce
Confidence 99432 233 3444445555567799999999999999999999999 44322 122347 9999999999987
Q ss_pred cCccceEEEE--EcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079 253 GGADIIAGAV--CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 323 (450)
Q Consensus 253 ~~g~~igG~l--~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~ 323 (450)
.+ +||.+ ..++++++.+.....+. . +.......++.+. +.+.+.+.+++..++.++|.+.|+++
T Consensus 288 vp---IGG~ii~~~d~e~l~~~~~~yPGr--~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 288 VP---VGGAIIAGFNDSFIQEISKMYPGR--A--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp CC---SSCEEEEESCHHHHHHHHHTSCSC--B--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee---cCceEEEeCCHHHHHHHHHhCCCC--C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 34544 34667777764432211 1 1112222333332 44556677777888888888888774
No 234
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.62 E-value=2.2e-14 Score=143.61 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079 100 TVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTF 172 (450)
Q Consensus 100 ~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~ 172 (450)
..+.+...+.+++|... .++++| +|.++++++.+.+++ ++.|++++..|.++...+. +.|+..++
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~G---aT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~-----l~Gl~p~~ 170 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPM---ATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESS---CHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECC---HHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH-----HcCCeeEE
Confidence 34567777777778543 489999 886666666555554 7899999999999998885 47888888
Q ss_pred eCC---C-----CHHHHHHhhhcC--CceEEEEecC-CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC------
Q 013079 173 VDI---S-----DHEMVNSAIVQG--RTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------ 234 (450)
Q Consensus 173 v~~---~-----d~~~l~~ai~~~--~t~lv~i~~~-~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~------ 234 (450)
+++ + |++.|+++|... +..++++.+| ++.+|.+.|+++|+++|++||+++|||++|+. +.+.
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 250 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHH
Confidence 765 2 899999999432 2344444444 45567899999999999999999999999943 3221
Q ss_pred ccCC-CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHH
Q 013079 235 PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHC 310 (450)
Q Consensus 235 ~~~~-g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~ 310 (450)
..+. ++|+++.|.||++..+-. ++++. .+++.++.+.....+ ...+......+..+. +.+.+.+.+++..
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~g----~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~ 324 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPG----RASASPSLDVLITLLSLGCSGYRKLLKERK 324 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCS----CBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhhc----CCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 699999999999986632 35554 566776666443210 111111223333222 2233445555567
Q ss_pred HHHHHHHHHHHhCC
Q 013079 311 HRALIFARRMKKLG 324 (450)
Q Consensus 311 ~~~~~l~~~L~~~~ 324 (450)
++++++.+.|++++
T Consensus 325 ~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 325 EMFVYLSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 77788888886643
No 235
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.57 E-value=1.1e-13 Score=136.43 Aligned_cols=283 Identities=14% Similarity=0.152 Sum_probs=170.9
Q ss_pred cccccCccccCCH-HHHHHhhcCCCCCCCCCccccC--CCChhHHHH----HHHHHHHhCCCeE-----EEecChHHHHH
Q 013079 61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR--HFNPTVLNL----SRQMAALEGTEAA-----YCTASDKAGMS 128 (450)
Q Consensus 61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r--~~~~~~~~l----~~~iA~l~g~~~~-----~~tsg~~~gt~ 128 (450)
.+-+|-.++.+.+ +++-..+...|.- +|.--| .+...++++ .++..+++|++.+ +=.-| |+.
T Consensus 58 eLIASEN~~S~aV~~a~gS~ltnKYaE---GyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~S---Gs~ 131 (490)
T 3ou5_A 58 ELIASENFCSRAALEALGSCLNNKYSE---GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS---GSP 131 (490)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGTCCCC---C----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHH
T ss_pred eEecCCCcCCHHHHHHhcCcccccccC---CCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCC---HHH
Confidence 4556777766554 5555556555422 222112 123444433 3456678898753 44457 999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCchhHHHHHH--HhCC-CccCe--eEEEeCCC------CHHHHHHhhhcCCceEEEEec
Q 013079 129 AISSVLMQLCSSGGHVVAARTLYGGTHALLT--HFFP-RACNI--TTTFVDIS------DHEMVNSAIVQGRTKVLYFES 197 (450)
Q Consensus 129 ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~--~~~~-~~~g~--~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~ 197 (450)
||.+++.++++|||+|+..+..+++....-. ...+ ...|. ++..+.++ |.|++++.....++++|++-.
T Consensus 132 AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~ 211 (490)
T 3ou5_A 132 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 211 (490)
T ss_dssp HHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECC
Confidence 9999999999999999999988877654320 0000 00121 12222111 899998877567899999865
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-----
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA----- 266 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~----- 266 (450)
..+| ...|.+++.++|++.|.++++|.++ ++...+|... +|+++.|.||.+.||- ||+|+.++
T Consensus 212 SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~ 285 (490)
T 3ou5_A 212 SAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAV 285 (490)
T ss_dssp SSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEE
T ss_pred ccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEEeccccccc
Confidence 4443 5689999999999999999999997 4445678776 8999999999998764 68887654
Q ss_pred ----------HHHHHHHHHhhhhhhccCCCchHHHHHHH--Hc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC
Q 013079 267 ----------NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 333 (450)
Q Consensus 267 ----------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~ 333 (450)
++.+++...--.. ...|+.+...+|.+. .. ....+....++..++++.|++.|.+.|+++..-+..
T Consensus 286 ~~k~~~~~~~~~~kkin~aVFPg-~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTd 364 (490)
T 3ou5_A 286 DPKTGREIPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTD 364 (490)
T ss_dssp CC--CCEEECCCHHHHHHHHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred cccccchhHHHHHHHHHhhcCcc-ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCC
Confidence 3555665432211 123344333333322 11 223456677778999999999999999987654422
Q ss_pred CCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079 334 DHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 374 (450)
Q Consensus 334 ~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~ 374 (450)
+ .++.+++. +...++..++...+
T Consensus 365 n------------------HlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 365 N------------------HLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp S------------------SEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred c------------------eEEEEeccccCCCHHHHHHHHHHcCc
Confidence 2 27888875 34456666666553
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.51 E-value=2.4e-13 Score=147.31 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=118.0
Q ss_pred CCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc-----cC------------CCEEEEeCCCchhHH
Q 013079 96 HFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC-----SS------------GGHVVAARTLYGGTH 155 (450)
Q Consensus 96 ~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~-----~~------------gd~Vi~~~~~y~~~~ 155 (450)
..++...+|.++|+++.+ .+.++|++| |++|+..|++... .. ..+||.....||+..
T Consensus 421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~S---GSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T 497 (831)
T 4a0g_A 421 NVYEPALKCAELLLDGVGKGWASRVYFSDN---GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497 (831)
T ss_dssp EECHHHHHHHHHHHHTTTTTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCC---hhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence 346777899999999987 468999999 9999999998652 11 236888888887643
Q ss_pred -HHHHHhCC---------Ccc-Cee---------------EEEeCC------------CC------------------HH
Q 013079 156 -ALLTHFFP---------RAC-NIT---------------TTFVDI------------SD------------------HE 179 (450)
Q Consensus 156 -~~~~~~~~---------~~~-g~~---------------v~~v~~------------~d------------------~~ 179 (450)
..+..... .+. +.. ....+. .+ .+
T Consensus 498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (831)
T 4a0g_A 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA 577 (831)
T ss_dssp HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence 22321000 000 100 011110 12 25
Q ss_pred HHHHhhh-------cCCceEEEEecC-CCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCC
Q 013079 180 MVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA 240 (450)
Q Consensus 180 ~l~~ai~-------~~~t~lv~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~ 240 (450)
.|++.+. .+++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++++.... ..+..
T Consensus 578 ~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 657 (831)
T 4a0g_A 578 YLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP 657 (831)
T ss_dssp HHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC
T ss_pred HHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC
Confidence 6777663 245789999997 898888864 8999999999999999999996653211 12246
Q ss_pred eEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 274 (450)
|+++ ++|.+++...++ |++++++++++.+..
T Consensus 658 Diit--lsK~L~gG~~Pl-gav~~~~~i~~~~~~ 688 (831)
T 4a0g_A 658 DIAC--FAKLLTGGMVPL-AVTLATDAVFDSFSG 688 (831)
T ss_dssp SEEE--ECGGGGTTSSCC-EEEEECHHHHHTTCS
T ss_pred cEEE--EecccccCccCc-EEEEECHHHHHHHhc
Confidence 8775 999998633688 999999998887643
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=68.40 E-value=7.9 Score=33.66 Aligned_cols=38 Identities=5% Similarity=0.138 Sum_probs=33.2
Q ss_pred cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 187 ~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.-.+..|+++-..|+.|....+.++.++|++||+.++.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 44678888887778999999999999999999998874
No 238
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=50.75 E-value=29 Score=30.18 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=31.5
Q ss_pred cCCceEEEEecC-CCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 187 QGRTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 187 ~~~t~lv~i~~~-~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.-.+..|+++-+ .|+.|......++.++|++||++++.
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345777877763 56889999999999999999999874
No 239
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=50.16 E-value=26 Score=29.08 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=44.7
Q ss_pred chhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079 151 YGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219 (450)
Q Consensus 151 y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g 219 (450)
|.--...+..++.. .|+++.++..+ .++++.+++...++.+|.++.... .....+.++.+.+++.+
T Consensus 31 HdiG~~~va~~l~~-~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 31 HDRGAKVVARALRD-AGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp CCHHHHHHHHHHHH-TTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHHHHHhcC
Confidence 33333444445554 79999988754 778887777567888888865542 34567888888888754
No 240
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=48.90 E-value=99 Score=27.89 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=37.0
Q ss_pred cCeeEEEeCCCCHHHHHHhhhcCCceEEEEec-CCCCcccccCHHHHHHHHHhcC-CEEEE
Q 013079 166 CNITTTFVDISDHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKG-VTVVV 224 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~-~~NptG~v~~l~~I~~la~~~g-i~liv 224 (450)
.++++...|..|.+.+.+++ + +...|+... ..++...+.....+.+.|++.| +.-++
T Consensus 55 ~~~~~~~~D~~d~~~l~~~~-~-~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 55 LGAKLIEASLDDHQRLVDAL-K-QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp TTCEEECCCSSCHHHHHHHH-T-TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred CCeEEEeCCCCCHHHHHHHH-h-CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 47777777888999999988 4 355554432 2222223455678999999988 64443
No 241
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=46.20 E-value=30 Score=30.56 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=30.8
Q ss_pred cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 187 ~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.-.+..|+++-. |+.|....++++.++|++||+.++.
T Consensus 176 Gl~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 346777777765 6779999999999999999999875
No 242
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=45.38 E-value=40 Score=29.59 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=30.5
Q ss_pred cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 187 ~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.-.+..|+++-. |+.|......++.++|++||++++.
T Consensus 165 Gl~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 165 GFKPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp TSCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 345677777755 7789999999999999999998874
No 243
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.32 E-value=50 Score=28.48 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred chhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC----CEEEEe
Q 013079 151 YGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----VTVVVD 225 (450)
Q Consensus 151 y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g----i~livD 225 (450)
|.--...+..++.. .|+++.++..+ .++++.+++...++.+|.+..-. +.....+.++.+.+++.+ +++++=
T Consensus 101 H~iG~~~va~~l~~-~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 101 HDIGKNLVAMMLES-GGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMNMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp CCHHHHHHHHHHHH-TTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred cHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 33333444445554 79999988765 67888777755678888886543 335667888888888765 666653
No 244
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=42.29 E-value=1e+02 Score=22.82 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=53.1
Q ss_pred eEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEE
Q 013079 116 AAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 194 (450)
Q Consensus 116 ~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~ 194 (450)
.++++.+ |.-+..++ ..+...| .+|++.+..-.... .+. . .++.....+..+.+.+.+.+ . +..+|+
T Consensus 7 ~v~I~G~---G~iG~~~~-~~l~~~g~~~v~~~~r~~~~~~-~~~----~-~~~~~~~~d~~~~~~~~~~~-~-~~d~vi 74 (118)
T 3ic5_A 7 NICVVGA---GKIGQMIA-ALLKTSSNYSVTVADHDLAALA-VLN----R-MGVATKQVDAKDEAGLAKAL-G-GFDAVI 74 (118)
T ss_dssp EEEEECC---SHHHHHHH-HHHHHCSSEEEEEEESCHHHHH-HHH----T-TTCEEEECCTTCHHHHHHHT-T-TCSEEE
T ss_pred eEEEECC---CHHHHHHH-HHHHhCCCceEEEEeCCHHHHH-HHH----h-CCCcEEEecCCCHHHHHHHH-c-CCCEEE
Confidence 4566665 54444433 3344556 56666554332222 221 2 46677777778889998887 3 566666
Q ss_pred EecCCCCcccccCHHHHHHHHHhcCCEEE
Q 013079 195 FESISNPTLAVANIPELSRLAHDKGVTVV 223 (450)
Q Consensus 195 i~~~~NptG~v~~l~~I~~la~~~gi~li 223 (450)
...+.. ....+.+.|.+.|+..+
T Consensus 75 ~~~~~~------~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFF------LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGG------GHHHHHHHHHHTTCEEE
T ss_pred ECCCch------hhHHHHHHHHHhCCCEE
Confidence 554321 24678888888888754
No 245
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=42.16 E-value=62 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=21.9
Q ss_pred cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEE
Q 013079 187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223 (450)
Q Consensus 187 ~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~li 223 (450)
+++.-+|.+.. .|...++-++++.++++|+.+|
T Consensus 86 ~~~d~~i~iS~----sG~t~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 86 RPTDLMIGVSV----WRYLRDTVAALAGAAERGVPTM 118 (187)
T ss_dssp CTTEEEEEECC----SSCCHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCCEE
Confidence 34444444432 5666778889999999886654
No 246
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=41.66 E-value=1.1e+02 Score=26.65 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=48.5
Q ss_pred CEEEEeCC--C-chhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEE--ecCCCCcccccCHHHHHHHH
Q 013079 142 GHVVAART--L-YGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYF--ESISNPTLAVANIPELSRLA 215 (450)
Q Consensus 142 d~Vi~~~~--~-y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i--~~~~NptG~v~~l~~I~~la 215 (450)
.+|++..+ + |.--...+..++.. .|+++.++..+ .++++.+++...++.+|.+ .... +.....++++.+.+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGA-NGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRL 169 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHH-TSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHH-CCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHH
Confidence 35655432 3 33333344444444 79999998665 7788877665778888888 5543 34556688888888
Q ss_pred HhcC
Q 013079 216 HDKG 219 (450)
Q Consensus 216 ~~~g 219 (450)
++.+
T Consensus 170 ~~~~ 173 (215)
T 3ezx_A 170 NEEK 173 (215)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8865
No 247
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=40.58 E-value=1.3e+02 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=35.1
Q ss_pred EEEeCCCCHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 170 TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 170 v~~v~~~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
+..++.+..+.+..++ . .++.+|++ ||...+-+++.++|+++|++++.
T Consensus 55 l~I~~G~r~~~~l~a~-~~~~~~~iIl------t~g~~~~~~i~~~A~~~~ipvl~ 103 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTAL-EMPNVRCLIL------TGNLEPVQLVLTKAEERGVPVIL 103 (139)
T ss_dssp EEEEETTCHHHHHHHT-TCTTEEEEEE------ETTCCCCHHHHHHHHHHTCCEEE
T ss_pred EEEEcCCHHHHHHHHH-hCCCCcEEEE------cCCCCCCHHHHHHHHHCCCeEEE
Confidence 4444455666666777 5 67888887 45666778899999999999875
No 248
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=40.15 E-value=1.6e+02 Score=27.25 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=54.9
Q ss_pred CCeEEEecChHHHHHHHHHHHHHhccCCC--EEEE--eCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCC
Q 013079 114 TEAAYCTASDKAGMSAISSVLMQLCSSGG--HVVA--ARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGR 189 (450)
Q Consensus 114 ~~~~~~tsg~~~gt~ai~~al~~l~~~gd--~Vi~--~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~ 189 (450)
....++|-| .+......+....+.|. +|++ ++|.+.+... +..+ .. .|++++.+... .+...+ . +
T Consensus 121 ~g~~ILTh~---~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~l-a~~L-~~-~gI~vtli~Ds---a~~~~m-~-~ 189 (315)
T 3ecs_A 121 DGATILTHA---YSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKM-AKAL-CH-LNVPVTVVLDA---AVGYIM-E-K 189 (315)
T ss_dssp TTEEEEECS---CCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHH-HHHH-HT-TTCCEEEECGG---GHHHHG-G-G
T ss_pred CCCEEEEcC---CcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHH-HHHH-HH-cCCCEEEEehh---HHHHHH-H-h
Confidence 345677765 44444444444444453 4555 4466666644 3233 33 69999987532 233334 2 4
Q ss_pred ceEEEEecC-CCCccccc-C--HHHHHHHHHhcCCEEEEe
Q 013079 190 TKVLYFESI-SNPTLAVA-N--IPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 190 t~lv~i~~~-~NptG~v~-~--l~~I~~la~~~gi~livD 225 (450)
...|++-.- --..|.+. . --.++-+|+.+|++|+|=
T Consensus 190 vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 190 ADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp CSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 555555321 12233332 1 346788899999998874
No 249
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=39.81 E-value=1.6e+02 Score=26.51 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCCCEEEEeC--CC-chhHHHHHHHh--------CCCcc-CeeEEEeCCC-CHHHHHHhhhcCCceE
Q 013079 126 GMSAISSVLMQLCSSGGHVVAAR--TL-YGGTHALLTHF--------FPRAC-NITTTFVDIS-DHEMVNSAIVQGRTKV 192 (450)
Q Consensus 126 gt~ai~~al~~l~~~gd~Vi~~~--~~-y~~~~~~~~~~--------~~~~~-g~~v~~v~~~-d~~~l~~ai~~~~t~l 192 (450)
.+..+...+........+|++.. .+ |.--...+..+ +.. . |+++.++-.+ .++++.+++...++.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~-~~G~eVi~LG~~vp~e~iv~aa~e~~~d~ 183 (262)
T 1xrs_B 105 SMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLER-YEMIDAYNLGSQVANEDFIKKAVELEADV 183 (262)
T ss_dssp CHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGG-CTTEEEEECCSSBCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHh-cCCcEEEECCCCCCHHHHHHHHHHcCCCE
Confidence 45555545544443333555432 23 33333334333 554 7 9999987665 6777777765678888
Q ss_pred EEEecCCCCcc-cccCHHHHHHHHHhcC----CEEEEeC
Q 013079 193 LYFESISNPTL-AVANIPELSRLAHDKG----VTVVVDN 226 (450)
Q Consensus 193 v~i~~~~NptG-~v~~l~~I~~la~~~g----i~livD~ 226 (450)
|.+.....+.- .+..+.++.+.+++.| +.+++=.
T Consensus 184 VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG 222 (262)
T 1xrs_B 184 LLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGG 222 (262)
T ss_dssp EEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEEC
T ss_pred EEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 88865543210 4566788888888765 6676644
No 250
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=39.20 E-value=85 Score=28.55 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC--EEEE--eCCCchhHHHHHHHhCCCccCeeEEEeCCCCHH
Q 013079 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG--HVVA--ARTLYGGTHALLTHFFPRACNITTTFVDISDHE 179 (450)
Q Consensus 104 l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd--~Vi~--~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~ 179 (450)
..+.-++++.....++|-+ .+......++.+.+.|. +|++ ++|.+.+ ...+..+. . .|++++.+...
T Consensus 99 Ia~~a~~~I~~g~~IlT~~---~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~-~-~gI~vtli~ds--- 169 (276)
T 1vb5_A 99 LASIGAQLIDDGDVIITHS---FSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELE-F-SGIEFEVITDA--- 169 (276)
T ss_dssp HHHHHHHHCCTTEEEECCS---CCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHH-H-TTCCEEEECGG---
T ss_pred HHHHHHHHccCCCEEEEeC---CChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHH-H-CCCCEEEEcHH---
Confidence 3334444454455677543 22222233444434333 5776 4577777 33332332 2 58999887622
Q ss_pred HHHHhhhcCCceEEEEec-CCCCcccc---cCHHHHHHHHHhcCCEEEEe
Q 013079 180 MVNSAIVQGRTKVLYFES-ISNPTLAV---ANIPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 180 ~l~~ai~~~~t~lv~i~~-~~NptG~v---~~l~~I~~la~~~gi~livD 225 (450)
.+-..+ . +...|++-. --...|.+ .--..++..|+++++++++=
T Consensus 170 a~~~~m-~-~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~ 217 (276)
T 1vb5_A 170 QMGLFC-R-EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVA 217 (276)
T ss_dssp GHHHHH-T-TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-c-cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEe
Confidence 222334 2 566666631 11123333 23457888899999988873
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=39.15 E-value=1.6e+02 Score=28.80 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhCC----------CeE-EEecChHHH--HHHHHHHHHHhccCCCEEE-E-eCCCchhHHHHHHHhCCC
Q 013079 100 TVLNLSRQMAALEGT----------EAA-YCTASDKAG--MSAISSVLMQLCSSGGHVV-A-ARTLYGGTHALLTHFFPR 164 (450)
Q Consensus 100 ~~~~l~~~iA~l~g~----------~~~-~~tsg~~~g--t~ai~~al~~l~~~gd~Vi-~-~~~~y~~~~~~~~~~~~~ 164 (450)
....+.+.|.++++. ..+ +++...++| |-+..++ ..+.+.|.+|+ + .++..++....+..+..+
T Consensus 75 v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA-~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~ 153 (443)
T 3dm5_A 75 IIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLA-RYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDR 153 (443)
T ss_dssp HHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEEECCCSSTHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHH-HHHHHCCCeEEEEeCCCcchhHHHHHHHHHHh
Confidence 345566666666652 123 444322223 2222333 23445565543 3 444445555555444343
Q ss_pred ccCeeEEEeCC-CCHHHH-HHhh---hcCCceEEEEecCCCCc---ccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 165 ACNITTTFVDI-SDHEMV-NSAI---VQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 165 ~~g~~v~~v~~-~d~~~l-~~ai---~~~~t~lv~i~~~~Npt---G~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
.|+++...+. .|+.++ .+++ ...+..+|+|.++..-. .....+.++.+..+...+++|+|+..
T Consensus 154 -~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 154 -YHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -GTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 5766544322 254433 2222 13457899998773211 11123445555555567899999874
No 252
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=38.14 E-value=15 Score=36.33 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=52.4
Q ss_pred cCCCEEEEeCCCch--hHHHHHHHhCCCccCeeEEEeCCCCHH-----HHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079 139 SSGGHVVAARTLYG--GTHALLTHFFPRACNITTTFVDISDHE-----MVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211 (450)
Q Consensus 139 ~~gd~Vi~~~~~y~--~~~~~~~~~~~~~~g~~v~~v~~~d~~-----~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I 211 (450)
.+|..+|+.-.++. .+..-+..++.. +|+..+++++..-. .-...-..-++.- + .++...|+..+++++
T Consensus 7 ~~g~~~i~~~f~W~w~~ia~e~~~yl~~-~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y--~i~~~~Gt~~df~~l 82 (496)
T 4gqr_A 7 QQGRTSIVHLFEWRWVDIALECERYLAP-KGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-Y--KLCTRSGNEDEFRNM 82 (496)
T ss_dssp CTTCCEEEEETTCCHHHHHHHHHHTTTT-TTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-S--CSCBTTBCHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHH-hCCCEEEeCccccCccCCCCCCCcccccCccC-c--eeCCCCCCHHHHHHH
Confidence 34666776655553 332333355665 79998888754100 0000000001111 1 355678999999999
Q ss_pred HHHHHhcCCEEEEeCCCC
Q 013079 212 SRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 212 ~~la~~~gi~livD~~~~ 229 (450)
++-||++||.||+|-|+-
T Consensus 83 v~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 83 VTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp HHHHHHTTCEEEEEECCS
T ss_pred HHHHHHCCCEEEEEEccC
Confidence 999999999999999873
No 253
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=37.53 E-value=1.9e+02 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 180 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 180 ~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.+...+ +++..+|.+.. .|...++-++++.|+++|+.+|.
T Consensus 107 ~l~~~~-~~~Dvvi~iS~----SG~t~~~~~~~~~ak~~g~~vi~ 146 (201)
T 3trj_A 107 QVAALG-NEDDILLVITT----SGDSENILSAVEEAHDLEMKVIA 146 (201)
T ss_dssp HHHHHC-CTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhC-CCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCcEEE
Confidence 344445 55555555533 57777888999999999977653
No 254
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=36.11 E-value=2.1e+02 Score=26.93 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHhccCCC--EEEE--eCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC-CCCccccc--
Q 013079 134 LMQLCSSGG--HVVA--ARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI-SNPTLAVA-- 206 (450)
Q Consensus 134 l~~l~~~gd--~Vi~--~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~-~NptG~v~-- 206 (450)
+....+.|. +|++ ++|.+.+.......+. + .|++++.+...-... .+.+.+...|++-.- --..|.+.
T Consensus 173 l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~-~-~GI~vtlI~Dsa~~~---~M~~~~Vd~VivGAd~V~aNG~v~NK 247 (347)
T 1t9k_A 173 IRAAVESGKRIRVFADETRPYLQGARLTAWELM-K-DGIEVYVITDNMAGW---LMKRGLIDAVVVGADRIALNGDTANK 247 (347)
T ss_dssp HHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHH-T-TTCEEEEECGGGHHH---HHHTTCCSEEEECCSEEETTSCEEEE
T ss_pred HHHHHHCCCeEEEEEeCCCCccccHHHHHHHHH-h-CCCCEEEEehhHHHH---HhhcCCCCEEEECccEEecCCCEEec
Confidence 333334443 5665 3477776543332333 2 699999986322333 332345666666311 01123332
Q ss_pred -CHHHHHHHHHhcCCEEEEe
Q 013079 207 -NIPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 207 -~l~~I~~la~~~gi~livD 225 (450)
=--.++-+||.+|++|+|=
T Consensus 248 iGT~~lAl~Ak~~~vPfyV~ 267 (347)
T 1t9k_A 248 IGTYSLAVLAKRNNIPFYVA 267 (347)
T ss_dssp TTHHHHHHHHHHTTCCEEEE
T ss_pred ccHHHHHHHHHHcCCCEEEe
Confidence 1346788899999999884
No 255
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=34.44 E-value=1.3e+02 Score=26.49 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=31.1
Q ss_pred CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079 167 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 220 (450)
Q Consensus 167 g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi 220 (450)
++.+...|..|.+.+.+++ + +...|+......+...+.-...+.+.|++.++
T Consensus 45 ~~~~~~~D~~d~~~~~~~~-~-~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 45 GITVRQADYGDEAALTSAL-Q-GVEKLLLISSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp TCEEEECCTTCHHHHHHHT-T-TCSEEEECC--------CHHHHHHHHHHHHTC
T ss_pred CCeEEEcCCCCHHHHHHHH-h-CCCEEEEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence 5677777888999999988 4 34555543322222223446688888888775
No 256
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=34.23 E-value=1.8e+02 Score=26.41 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079 140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210 (450)
Q Consensus 140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~------~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~ 210 (450)
++..+++..+.|.-+. + .+|++...+.. . ++.+|.+.++..+.++|+++.-.++ +-
T Consensus 178 ~~~~~v~~H~af~Yf~---~-----~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 242 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLA---K-----RFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KI 242 (286)
T ss_dssp SCCEEEEEESCCHHHH---H-----HTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HH
T ss_pred CCCEEEEECCchHHHH---H-----HCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 4677888777766322 2 15666544321 1 4555666665578999998765444 23
Q ss_pred HHHHHHhcCCEEEE
Q 013079 211 LSRLAHDKGVTVVV 224 (450)
Q Consensus 211 I~~la~~~gi~liv 224 (450)
+..++++.|+.+++
T Consensus 243 ~~~la~~~g~~v~~ 256 (286)
T 3gi1_A 243 AHAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHHhCCeEEE
Confidence 34567888988764
No 257
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=32.88 E-value=1.8e+02 Score=23.78 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=23.0
Q ss_pred cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEE--EEeC
Q 013079 187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV--VVDN 226 (450)
Q Consensus 187 ~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~l--ivD~ 226 (450)
+++.-+|.+.. .|...++-++++.++++|+.+ |+|.
T Consensus 95 ~~~d~vI~iS~----sG~t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 95 TPQDVVIAISN----SGESSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp CTTCEEEEECS----SSCCHHHHHHHHHHHTTTCCEEEEESC
T ss_pred CCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 34444555432 466777888899999987654 4554
No 258
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=32.67 E-value=18 Score=35.59 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
++...|+..+++++++-||++|+.||+|-|+
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4556788889999999999999999999987
No 259
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=32.66 E-value=2.4e+02 Score=24.20 Aligned_cols=122 Identities=10% Similarity=0.059 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe---eEE
Q 013079 98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI---TTT 171 (450)
Q Consensus 98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~---~v~ 171 (450)
.+...++-..++...++. .++=..+ |+......+...+.++.+|+..+..-... ..++....+ .|. ++.
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~---G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~-~g~~~~~i~ 112 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITP---AAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFRE-AGYSPSRVR 112 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEEST---THHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHH-TTCCGGGEE
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcC---CchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHH-cCCCcCcEE
Confidence 567777778888888776 6654444 44333333333345567888877664433 333333322 343 366
Q ss_pred EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 172 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 172 ~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
++.. |..++...+......+|++..... ....-++++.++.+ .|-.+++|++.
T Consensus 113 ~~~g-da~~~l~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~Lk-pGG~lv~dn~~ 165 (221)
T 3dr5_A 113 FLLS-RPLDVMSRLANDSYQLVFGQVSPM--DLKALVDAAWPLLR-RGGALVLADAL 165 (221)
T ss_dssp EECS-CHHHHGGGSCTTCEEEEEECCCTT--THHHHHHHHHHHEE-EEEEEEETTTT
T ss_pred EEEc-CHHHHHHHhcCCCcCeEEEcCcHH--HHHHHHHHHHHHcC-CCcEEEEeCCC
Confidence 6543 444443323134567888753211 00011333333333 36677888875
No 260
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.66 E-value=57 Score=23.56 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 178 ~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~ 227 (450)
..+..+++++.+.++|++.+--.| .-...|..+|++++++++.-..
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~----~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP----ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH----HHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEECC
Confidence 456777785677888888654333 2356788899999999886543
No 261
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.92 E-value=45 Score=26.73 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=41.0
Q ss_pred chhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079 151 YGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219 (450)
Q Consensus 151 y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g 219 (450)
|.--...+..++.. .|+++.++..+ .++++.+++...++.+|.++....+ ....++++.+.+++.+
T Consensus 16 HdiG~~~v~~~l~~-~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 16 HAVGNKILDHAFTN-AGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ--GEIDCKGLRQKCDEAG 82 (137)
T ss_dssp CCHHHHHHHHHHHH-TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST--HHHHHTTHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcC--cHHHHHHHHHHHHhcC
Confidence 43333344445554 79999887544 6788877775667888888765532 2334566676676654
No 262
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=30.98 E-value=67 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=29.7
Q ss_pred cCCceEEEEecCCCC-----------cccccCHHHHHHHHHhcCCEEEE
Q 013079 187 QGRTKVLYFESISNP-----------TLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 187 ~~~t~lv~i~~~~Np-----------tG~v~~l~~I~~la~~~gi~liv 224 (450)
.-.+..|+++-. |+ .|......++.++|++||+.++.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345677777654 44 69999999999999999999875
No 263
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=30.97 E-value=1e+02 Score=28.00 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=36.5
Q ss_pred cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC-CEEEE
Q 013079 166 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 224 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-i~liv 224 (450)
.|+++...|..|.+.+.+++ + ....|+..... . .+.....+.+.|++.| +.-++
T Consensus 58 ~~v~~v~~Dl~d~~~l~~a~-~-~~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 58 LGAIIVKGELDEHEKLVELM-K-KVDVVISALAF--P-QILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp TTCEEEECCTTCHHHHHHHH-T-TCSEEEECCCG--G-GSTTHHHHHHHHHHHCCCCEEE
T ss_pred CCCEEEEecCCCHHHHHHHH-c-CCCEEEECCch--h-hhHHHHHHHHHHHhcCCCCEEE
Confidence 47788888888999999998 4 35555433221 1 2445678899999887 65444
No 264
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.84 E-value=28 Score=25.47 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013079 208 IPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~~ 227 (450)
-.+|.++|+++|++++.|-.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 56899999999999999853
No 265
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=30.48 E-value=87 Score=29.42 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCchhHHHHHHHhCCCccCeeEEEeCCCC-HHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeC
Q 013079 148 RTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 226 (450)
Q Consensus 148 ~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d-~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~ 226 (450)
-|.|.++...... .+. ..+-+.+++... .+.+.+++....++.+++-+..-|. .+.++|.++|+++|+.++==+
T Consensus 64 vpvy~sv~ea~~~-~p~-~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e---~~~~~l~~~a~~~g~rliGPN 138 (334)
T 3mwd_B 64 IPVFKNMADAMRK-HPE-VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE---ALTRKLIKKADQKGVTIIGPA 138 (334)
T ss_dssp EEEESSHHHHHHH-CTT-CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCH---HHHHHHHHHHHHHTCEEECSS
T ss_pred ceeeCCHHHHhhc-CCC-CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHHcCCEEEccC
Confidence 3667777776532 112 356777777765 4677777833678877774433222 467899999999999888666
Q ss_pred CC
Q 013079 227 TF 228 (450)
Q Consensus 227 ~~ 228 (450)
+.
T Consensus 139 c~ 140 (334)
T 3mwd_B 139 TV 140 (334)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 266
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=29.79 E-value=1.6e+02 Score=26.33 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred CEEEEeCC---CchhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh
Q 013079 142 GHVVAART---LYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 217 (450)
Q Consensus 142 d~Vi~~~~---~y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~ 217 (450)
.+|++..+ .|.--...+..++.. .|+++.++..+ .++++.+++...++.+|.+.... +.....+.++.+.+++
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~-~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~--~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRA-NGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALM--TTTMYAFKEVNDMLLE 200 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHH-TTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCC--TTTTTHHHHHHHHHHT
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeec--cCCHHHHHHHHHHHHh
Confidence 45654432 333333344444544 79999877543 56677666645678888876543 3345678888888887
Q ss_pred cC--CEEEE
Q 013079 218 KG--VTVVV 224 (450)
Q Consensus 218 ~g--i~liv 224 (450)
.+ +.+++
T Consensus 201 ~~~~~~v~v 209 (258)
T 2i2x_B 201 NGIKIPFAC 209 (258)
T ss_dssp TTCCCCEEE
T ss_pred cCCCCcEEE
Confidence 54 44444
No 267
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=29.43 E-value=27 Score=34.62 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
+....|+..+++++++.||++|+.||+|-|+-+
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 103 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNH 103 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 344568888999999999999999999999733
No 268
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=28.92 E-value=32 Score=33.68 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=27.8
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
+...|+..+++++++-||++|+.||+|-|+-+.
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 112 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVINHR 112 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 344688889999999999999999999997433
No 269
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=28.65 E-value=29 Score=34.40 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=27.8
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
++...|+..+++++++.||++|+.||+|-|+-+
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 105 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVMNH 105 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 334468888999999999999999999999733
No 270
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=28.50 E-value=2e+02 Score=25.96 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCEEEEeC
Q 013079 208 IPELSRLAHDKGVTVVVDN 226 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~ 226 (450)
+.++.+.++++|+++++|-
T Consensus 149 ~~~~~~~a~~~~~~v~~D~ 167 (309)
T 3umo_A 149 LTQLISAAQKQGIRCIVDS 167 (309)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 6688888889999999995
No 271
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=28.39 E-value=29 Score=34.41 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
++...|+..+++++++.||++|+.||+|-|+-+
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH 107 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNH 107 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 344468888999999999999999999999733
No 272
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=28.01 E-value=30 Score=34.72 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
++...|+..+++++++.||++|+.||+|-|+-+
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH 106 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDH 106 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecCC
Confidence 334468888999999999999999999999733
No 273
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=27.88 E-value=1.7e+02 Score=26.07 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=35.2
Q ss_pred cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC-CEEEE
Q 013079 166 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 224 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-i~liv 224 (450)
.|+++...|..|.+.+.+++ +. ...|+..... ..+.....+.+.|++.| +.-++
T Consensus 56 ~~v~~v~~D~~d~~~l~~~~-~~-~d~vi~~a~~---~~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 56 SGANIVHGSIDDHASLVEAV-KN-VDVVISTVGS---LQIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TTCEEECCCTTCHHHHHHHH-HT-CSEEEECCCG---GGSGGGHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEEeccCCHHHHHHHH-cC-CCEEEECCcc---hhhhhHHHHHHHHHhcCCCceEe
Confidence 47787777888999999988 43 4455433221 11334578888998887 64444
No 274
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.88 E-value=83 Score=26.97 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE--eCCCCCCCCCccCCCCeEEEeCCCCcccc
Q 013079 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKFISG 253 (450)
Q Consensus 176 ~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv--D~~~~~~~~~~~~~g~di~~~S~sK~~g~ 253 (450)
.|.++|++++ ..+...|++- .|.+..++++.+.++++|-.+++ |-+ .++ +..+.+.+++. +.+++
T Consensus 17 r~~~~l~~al-~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli-~Gl--s~d~~ai~fL~----~~~~p 83 (192)
T 3kts_A 17 HNQKDMEKIL-ELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLV-NGL--KNDDYAIDFLC----TEICP 83 (192)
T ss_dssp SSSHHHHHHT-TSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGE-ETC--CCSHHHHHHHH----HTTCC
T ss_pred cCHHHHHHHH-cCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCch-hcc--CCcHHHHHHHH----hCCCC
Confidence 4789999999 6667777773 47889999999999999755444 433 222 22222333332 33343
Q ss_pred CccceEEEEEcCHHHHHHHHH
Q 013079 254 GADIIAGAVCGPANLVNSMMD 274 (450)
Q Consensus 254 ~g~~igG~l~~~~~~~~~l~~ 274 (450)
- |.+..+...+...+.
T Consensus 84 d-----GIIsTk~~~i~~Ak~ 99 (192)
T 3kts_A 84 D-----GIISTRGNAIMKAKQ 99 (192)
T ss_dssp S-----EEEESCHHHHHHHHH
T ss_pred C-----EEEeCcHHHHHHHHH
Confidence 2 667777777666654
No 275
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=27.41 E-value=2.8e+02 Score=25.06 Aligned_cols=70 Identities=7% Similarity=0.109 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C---CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079 140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212 (450)
Q Consensus 140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~ 212 (450)
++..+++..+.|.-+.. .+|++...+.. . ++.+|.+.++..+.++|+++.-.++- -+.
T Consensus 189 ~~~~~v~~H~af~Yf~~--------~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~ 253 (291)
T 1pq4_A 189 PQRKFIVFHPSWAYFAR--------DYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFSTK-------SSE 253 (291)
T ss_dssp SCCEEEESSCCCHHHHH--------HTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCH-------HHH
T ss_pred CCCEEEEECCchHHHHH--------HCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHH
Confidence 36678888877763322 15666554331 1 44555555645688999987655542 223
Q ss_pred HHHHhcCCEEEE
Q 013079 213 RLAHDKGVTVVV 224 (450)
Q Consensus 213 ~la~~~gi~liv 224 (450)
.++++.|+.+++
T Consensus 254 ~ia~~~g~~v~~ 265 (291)
T 1pq4_A 254 AIAAEIGAGVEL 265 (291)
T ss_dssp HHHHHHTCEEEE
T ss_pred HHHHHcCCeEEE
Confidence 457778877654
No 276
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=27.40 E-value=2.9e+02 Score=25.21 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=39.1
Q ss_pred cCeeEEEeCCCCHHHHHHhhhcCCceEEEEec-CCCCcccccCHHHHHHHHHhcC-CEEEEeCCC
Q 013079 166 CNITTTFVDISDHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKG-VTVVVDNTF 228 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~-~~NptG~v~~l~~I~~la~~~g-i~livD~~~ 228 (450)
.++++...|..|.+.+.+++...+..+|+... ..| +.....|.+.|++.| +..++=.+|
T Consensus 60 ~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n----~~~~~~l~~aa~~~g~v~~~v~S~~ 120 (346)
T 3i6i_A 60 KGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGES----ILDQIALVKAMKAVGTIKRFLPSEF 120 (346)
T ss_dssp TTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCGGG----GGGHHHHHHHHHHHCCCSEEECSCC
T ss_pred CCcEEEEeecCCHHHHHHHHhhCCCCEEEECCchhh----HHHHHHHHHHHHHcCCceEEeeccc
Confidence 47888888888999999998422455555432 223 334578999999888 665543344
No 277
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=27.35 E-value=34 Score=34.42 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=27.3
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
...|+..+++++++-||++|+.||+|-|+-+
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH 117 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNH 117 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 5568889999999999999999999998733
No 278
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=27.17 E-value=33 Score=34.01 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
...|+..+++++++.||++|+.||+|-|+-
T Consensus 76 p~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 105 (488)
T 1wza_A 76 PDYGTLEDFHKLVEAAHQRGIKVIIDLPIN 105 (488)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 346888899999999999999999999973
No 279
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=26.44 E-value=3.4e+02 Score=28.54 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=50.0
Q ss_pred CEEEEeCC---CchhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh
Q 013079 142 GHVVAART---LYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 217 (450)
Q Consensus 142 d~Vi~~~~---~y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~ 217 (450)
.+|++... .|.--...+..++.. .|++|.....+ .++++.++....++.+|.++... ++....+.++++.+++
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~-~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~--~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFAD-LGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLA--AGHKTLVPELIKELNS 681 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHH-TTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECS--SCHHHHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHh-CCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeec--HHHHHHHHHHHHHHHh
Confidence 35665443 344434444444444 79999887665 67777666657788899887654 3444558899999988
Q ss_pred cCC
Q 013079 218 KGV 220 (450)
Q Consensus 218 ~gi 220 (450)
.|+
T Consensus 682 ~G~ 684 (762)
T 2xij_A 682 LGR 684 (762)
T ss_dssp TTC
T ss_pred cCC
Confidence 764
No 280
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=26.42 E-value=2.1e+02 Score=25.15 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=32.2
Q ss_pred CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcc--cccCHHHHHHHHHhcCC
Q 013079 167 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL--AVANIPELSRLAHDKGV 220 (450)
Q Consensus 167 g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG--~v~~l~~I~~la~~~gi 220 (450)
++++...|..|.+.+.+++ + +...|+.....++.. .+.-...+.+.|++.++
T Consensus 46 ~~~~~~~D~~d~~~l~~~~-~-~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 46 GVEVRHGDYNQPESLQKAF-A-GVSKLLFISGPHYDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp TCEEEECCTTCHHHHHHHT-T-TCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEeccCCHHHHHHHH-h-cCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCC
Confidence 5677777888999999988 4 355555433322211 12234577888888775
No 281
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=26.39 E-value=36 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=28.5
Q ss_pred CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
++...|+..+++++++-||++|+.||.|-|+.+.
T Consensus 74 idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~NH~ 107 (424)
T 2dh2_A 74 IDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107 (424)
T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEECCTTTT
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECCCcC
Confidence 3445688889999999999999999999997443
No 282
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=26.29 E-value=31 Score=33.69 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
+...|+..+++++++.||++|+.||+|-|+-
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 93 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLPIH 93 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3346888899999999999999999999863
No 283
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.29 E-value=1.2e+02 Score=28.21 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=40.6
Q ss_pred ccCCCEEEEeCCCch------hHHHHHHHhCCCccCeeEEEeCCC-------------CHHHHHHhhhcCCceEEEEecC
Q 013079 138 CSSGGHVVAARTLYG------GTHALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 138 ~~~gd~Vi~~~~~y~------~~~~~~~~~~~~~~g~~v~~v~~~-------------d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++||+|-+.+|+.+ .........+.. .|++++.-+.. -.++|.+++.++++++|+...-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTD-MGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHh-CCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 578999888877643 122222233444 68888765421 2567888886778899887644
Q ss_pred CCCcccc
Q 013079 199 SNPTLAV 205 (450)
Q Consensus 199 ~NptG~v 205 (450)
..-+-.+
T Consensus 88 G~g~~rl 94 (327)
T 4h1h_A 88 GFNSNQL 94 (327)
T ss_dssp CSCGGGG
T ss_pred chhHHHH
Confidence 4333333
No 284
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=26.09 E-value=1.8e+02 Score=26.28 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=36.2
Q ss_pred cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC-CEEEE
Q 013079 166 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 224 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-i~liv 224 (450)
.++++...|..|.+.+.+++ +. ...|+..... . .+.-...+.+.|++.| +.-++
T Consensus 56 ~~v~~v~~D~~d~~~l~~a~-~~-~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 56 MGVTIIEGEMEEHEKMVSVL-KQ-VDIVISALPF--P-MISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp TTCEEEECCTTCHHHHHHHH-TT-CSEEEECCCG--G-GSGGGHHHHHHHHHHCCCCEEE
T ss_pred CCcEEEEecCCCHHHHHHHH-cC-CCEEEECCCc--c-chhhHHHHHHHHHHhCCccEEe
Confidence 47788888888999999998 43 5555443221 1 1445678889998887 65444
No 285
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.08 E-value=1e+02 Score=28.44 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079 140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210 (450)
Q Consensus 140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~------~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~ 210 (450)
++..+++..+.|.-+ ++ .+|++...+.. . ++.+|.+.++..++++|+++.-.++ +-
T Consensus 189 ~~~~~v~~H~af~Yf---a~-----~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~ 253 (312)
T 2o1e_A 189 EKKEFITQHTAFGYL---AK-----EYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASS-------KV 253 (312)
T ss_dssp SCCEEEESSCTTHHH---HH-----HTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCH-------HH
T ss_pred CCCEEEEECCchHHH---HH-----HCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 456788877766522 22 25776655421 1 4455555564567889987754443 34
Q ss_pred HHHHHHhcCCEEE
Q 013079 211 LSRLAHDKGVTVV 223 (450)
Q Consensus 211 I~~la~~~gi~li 223 (450)
+..++++.|+.++
T Consensus 254 ~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 254 ADTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHHHHHHhCCcEE
Confidence 5556788888764
No 286
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=26.08 E-value=1.2e+02 Score=22.81 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=35.0
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEE-EEeCCC
Q 013079 177 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTV-VVDNTF 228 (450)
Q Consensus 177 d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~l-ivD~~~ 228 (450)
+++.|.+.++..++..|++-.|-|..|+..+ .++.++..++.++++ .+||-+
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERl 95 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5677777775568889999999888887754 445444443336665 477754
No 287
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=26.00 E-value=25 Score=37.05 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=24.6
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 203 LAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 203 G~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
|+..+++++++-||++|+.||.|-|+.+.
T Consensus 313 ~~~~dfk~LV~~aH~~GI~VIlDvV~NHt 341 (718)
T 2e8y_A 313 TRKTELKQMINTLHQHGLRVILDVVFNHV 341 (718)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred ccHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 34678999999999999999999997443
No 288
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=25.91 E-value=31 Score=36.21 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=26.8
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
..|++.+.+++++++.||++|+-||.|-|+.+.
T Consensus 248 ~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~ 280 (714)
T 2ya0_A 248 KNPEKRIAEFKNLINEIHKRGMGAILDVVYNHT 280 (714)
T ss_dssp TSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred CCccchHHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 344455788999999999999999999997443
No 289
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=25.30 E-value=1.6e+02 Score=27.68 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=52.6
Q ss_pred CeEEEecChHHHHHHHHHHHHHhccCCC--EEEEe--CCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCc
Q 013079 115 EAAYCTASDKAGMSAISSVLMQLCSSGG--HVVAA--RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT 190 (450)
Q Consensus 115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd--~Vi~~--~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t 190 (450)
...++|-+ -+......++...+.|. +|++. +|.+.+ ......+ .. .|++++.+... .+...+ .+.
T Consensus 142 g~~ILTh~---~S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qG-rltA~eL-~~-~GI~vtlI~Ds---a~~~~M--~~V 210 (338)
T 3a11_A 142 GDVIMTHC---HSKAAISVMKTAWEQGKDIKVIVTETRPKWQG-KITAKEL-AS-YGIPVIYVVDS---AARHYM--KMT 210 (338)
T ss_dssp TCEEEECS---CCHHHHHHHHHHHHTTCCCEEEEECCTTTTHH-HHHHHHH-HH-TTCCEEEECGG---GTTTTG--GGC
T ss_pred CCEEEEeC---CcHHHHHHHHHHHHCCCeEEEEEeCCCCchhh-HHHHHHH-Hh-CCCCEEEEehH---HHHHHH--HhC
Confidence 34677654 33222334444444443 56663 477777 3333233 33 69999987521 222222 345
Q ss_pred eEEEEecC-CCCccccc---CHHHHHHHHHhcCCEEEEe
Q 013079 191 KVLYFESI-SNPTLAVA---NIPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 191 ~lv~i~~~-~NptG~v~---~l~~I~~la~~~gi~livD 225 (450)
..|++-.- --..|.+. =--.++-+||.+|++|+|=
T Consensus 211 d~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~ 249 (338)
T 3a11_A 211 DKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIA 249 (338)
T ss_dssp SEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEE
T ss_pred CEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEe
Confidence 56665311 11223332 2346788899999999884
No 290
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.28 E-value=40 Score=25.25 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013079 208 IPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~~ 227 (450)
-.+|.++|+++|++++.|-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46899999999999999853
No 291
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=24.79 E-value=87 Score=23.68 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 178 ~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.++..+++++.+.++|++..-..|. -..+|..+|.+++++++.
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~~----~~~~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPTV----RKSEIEYYASLAQISIHH 69 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCHH----HHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH----HHHHHHHHHHHcCCcEEE
Confidence 4567777866788888885533332 267888899999999884
No 292
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=24.72 E-value=35 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
+...|+..+++++++-||++|+.||+|-|+.+
T Consensus 91 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 122 (478)
T 2guy_A 91 NENYGTADDLKALSSALHERGMYLMVDVVANH 122 (478)
T ss_dssp CTTSCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 34467888999999999999999999998743
No 293
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=24.51 E-value=33 Score=33.58 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.4
Q ss_pred CcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 201 PTLAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 201 ptG~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
..|+..+++++++.|+++|+.||+|-++
T Consensus 79 ~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 79 EYGTLADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3466678999999999999999999986
No 294
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=24.50 E-value=37 Score=32.81 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.5
Q ss_pred CcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 201 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 201 ptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
..|+..+++++++-||++|+.||+|-|+.+.
T Consensus 64 ~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~ 94 (405)
T 1ht6_A 64 KYGNAAELKSLIGALHGKGVQAIADIVINHR 94 (405)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEEECcCcc
Confidence 3577888999999999999999999997443
No 295
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.49 E-value=31 Score=34.54 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
-.-|+..+++++++-||++|+.||.|-|+-
T Consensus 74 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 103 (549)
T 4aie_A 74 PQYGTMADMDELISKAKEHHIKIVMDLVVN 103 (549)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 345788899999999999999999999973
No 296
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=24.43 E-value=26 Score=34.69 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=49.8
Q ss_pred CCEEEEeCCC--chhHHHHHHHhCCCccCeeEEEeCCCC--HH-HHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079 141 GGHVVAARTL--YGGTHALLTHFFPRACNITTTFVDISD--HE-MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 215 (450)
Q Consensus 141 gd~Vi~~~~~--y~~~~~~~~~~~~~~~g~~v~~v~~~d--~~-~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la 215 (450)
++.|++.--+ +.++..-+...+.. +|+...++.+.- .. +-...-..-++.- + .++...|+..+++++++.|
T Consensus 9 ~~~~i~~~F~w~~~gi~~~~ldyL~~-LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~d-y--~idp~~Gt~~d~~~lv~~~ 84 (471)
T 1jae_A 9 GRNSIVHLFEWKWNDIADECERFLQP-QGFGGVQISPPNEYLVADGRPWWERYQPVS-Y--IINTRSGDESAFTDMTRRC 84 (471)
T ss_dssp TCEEEEEETTCCHHHHHHHHHHTTTT-TTEEEEECCCCSCBBCCTTCCGGGGGSBCC-S--CSEETTEEHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHH-cCCCEEEeCccccccCCCCCCccccccccc-c--cccCCCCCHHHHHHHHHHH
Confidence 4566654443 44444432134555 798888876530 00 0000000001111 2 3444578889999999999
Q ss_pred HhcCCEEEEeCCCCC
Q 013079 216 HDKGVTVVVDNTFSP 230 (450)
Q Consensus 216 ~~~gi~livD~~~~~ 230 (450)
|++|+.||+|-|+-+
T Consensus 85 h~~Gi~VilD~V~NH 99 (471)
T 1jae_A 85 NDAGVRIYVDAVINH 99 (471)
T ss_dssp HHTTCEEEEEECCSB
T ss_pred HHCCCEEEEEEeccc
Confidence 999999999999733
No 297
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=24.25 E-value=2.8e+02 Score=25.24 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=50.8
Q ss_pred CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC-C--chhHHHHHHHhCCC--ccCeeEEEeCCCCHHHHHHhhhcC
Q 013079 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAART-L--YGGTHALLTHFFPR--ACNITTTFVDISDHEMVNSAIVQG 188 (450)
Q Consensus 114 ~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~-~--y~~~~~~~~~~~~~--~~g~~v~~v~~~d~~~l~~ai~~~ 188 (450)
...+++|.+ +|.-+-.+ +..|++.|.+|++..- . .......+...... ..++++...|..|.+.+.+++ .
T Consensus 25 ~~~vlVtGa--tG~iG~~l-~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~- 99 (351)
T 3ruf_A 25 PKTWLITGV--AGFIGSNL-LEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM-K- 99 (351)
T ss_dssp CCEEEEETT--TSHHHHHH-HHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT-T-
T ss_pred CCeEEEECC--CcHHHHHH-HHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-c-
Confidence 445666653 14444333 3345666777665432 1 22222222111100 025677777778999999988 4
Q ss_pred CceEEEEec-CCCCcccccC-----------HHHHHHHHHhcCC
Q 013079 189 RTKVLYFES-ISNPTLAVAN-----------IPELSRLAHDKGV 220 (450)
Q Consensus 189 ~t~lv~i~~-~~NptG~v~~-----------l~~I~~la~~~gi 220 (450)
+..+|+-.. ..++.....+ ...|.+.|++.++
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~ 143 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455555332 2221111111 3357888887764
No 298
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.20 E-value=3e+02 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=24.7
Q ss_pred HhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEE
Q 013079 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223 (450)
Q Consensus 183 ~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~li 223 (450)
..+ +++.-+|.+.. .|...++-++++.||++|+.+|
T Consensus 105 ~~~-~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 105 ALG-HAGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp HHC-CTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred hcC-CCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 334 55555555533 4677788899999999997654
No 299
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=23.85 E-value=39 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013079 208 IPELSRLAHDKGVTVVVDNT 227 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~~ 227 (450)
-.+|.++|+++|++++.|-.
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 46899999999999999853
No 300
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=23.67 E-value=3.9e+02 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079 188 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228 (450)
Q Consensus 188 ~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 228 (450)
.+.++|++.... + ..-+.++.+.++++|+++++|-..
T Consensus 130 ~~~~~v~~~g~~-~---~~~~~~~~~~a~~~g~~v~~D~~~ 166 (299)
T 3ikh_A 130 VAGDILLQQGNF-S---LDKTRALFQYARSRGMTTVFNPSP 166 (299)
T ss_dssp CTTCEEEECSCS-C---HHHHHHHHHHHHHTTCEEEECCCS
T ss_pred ccCCEEEECCCC-C---HHHHHHHHHHHHHcCCEEEEcccc
Confidence 356677764211 0 123567888899999999999764
No 301
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=23.50 E-value=47 Score=33.89 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=26.7
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...|+..+++++++-||++|+.||.|-|+.+.
T Consensus 213 p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 213 PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 34567788999999999999999999997444
No 302
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=23.38 E-value=37 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
...|+..+++++++-||++|+.||+|-|+.+
T Consensus 91 p~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH 121 (475)
T 2z1k_A 91 PILGGNEALRHLLEVAHAHGVRVILDGVFNH 121 (475)
T ss_dssp GGGTCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 3457788999999999999999999998743
No 303
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.21 E-value=41 Score=25.47 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCEEEEeC
Q 013079 208 IPELSRLAHDKGVTVVVDN 226 (450)
Q Consensus 208 l~~I~~la~~~gi~livD~ 226 (450)
-.+|.++|+++|++++.|-
T Consensus 29 A~~I~e~A~e~gVPi~e~~ 47 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDI 47 (98)
T ss_dssp HHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHcCCCeecCH
Confidence 4589999999999999984
No 304
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.08 E-value=1.6e+02 Score=28.11 Aligned_cols=61 Identities=8% Similarity=-0.024 Sum_probs=33.5
Q ss_pred ccCCCEEEEeCCCchhH------HHHHHHhCCCccCeeEEEeCCC-------------CHHHHHHhhhcCCceEEEEecC
Q 013079 138 CSSGGHVVAARTLYGGT------HALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 198 (450)
Q Consensus 138 ~~~gd~Vi~~~~~y~~~------~~~~~~~~~~~~g~~v~~v~~~-------------d~~~l~~ai~~~~t~lv~i~~~ 198 (450)
+++||+|-+.+|+.+.. .......+.. .|++++.-+.. -.++|.+++.++++++|+..--
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR-KGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 45677776666664321 1111123333 56666654321 3567777885677888887544
Q ss_pred C
Q 013079 199 S 199 (450)
Q Consensus 199 ~ 199 (450)
.
T Consensus 119 G 119 (371)
T 3tla_A 119 G 119 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 305
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=22.57 E-value=36 Score=33.77 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
+...|+..+++++++-||++|+.||+|-|+-+
T Consensus 96 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH 127 (488)
T 2wc7_A 96 DPMLGGNEAFKELLDAAHQRNIKVVLDGVFNH 127 (488)
T ss_dssp CGGGTHHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 33457788999999999999999999998733
No 306
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=22.25 E-value=36 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.8
Q ss_pred cccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 202 TLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 202 tG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
.|+..+++++++.||++|+.||+|-|+.+.
T Consensus 71 ~G~~~d~~~lv~~~h~~Gi~VilD~V~NH~ 100 (422)
T 1ua7_A 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHT 100 (422)
T ss_dssp TEEHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 588899999999999999999999997443
No 307
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=22.14 E-value=4.8e+02 Score=24.28 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHH-HHh------hhcCCceEEEEecC
Q 013079 127 MSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV-NSA------IVQGRTKVLYFESI 198 (450)
Q Consensus 127 t~ai~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l-~~a------i~~~~t~lv~i~~~ 198 (450)
|-++.++...... +|..++..+.++......++.+.-. .-++.....++.+++ .+. ++..++++|+|.++
T Consensus 43 tL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd--~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 43 NFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD--PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC--GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC--HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecc
Confidence 3344444433322 3566665555443222223322111 012333445566554 222 43457889999887
Q ss_pred CCCc--------------cccc-------CHHHHHHHHHhcCCEEEE
Q 013079 199 SNPT--------------LAVA-------NIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 199 ~Npt--------------G~v~-------~l~~I~~la~~~gi~liv 224 (450)
+.-. |.+. -+.+|..+++++|+.+++
T Consensus 121 ~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 121 GNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp TTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 6643 1111 144566778999988664
No 308
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=21.77 E-value=2.8e+02 Score=21.45 Aligned_cols=54 Identities=15% Similarity=0.376 Sum_probs=33.8
Q ss_pred cCeeEEEeCCCCHHHHHHhhhc----------CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEE
Q 013079 166 CNITTTFVDISDHEMVNSAIVQ----------GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223 (450)
Q Consensus 166 ~g~~v~~v~~~d~~~l~~ai~~----------~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~li 223 (450)
++..+..++..|++.+.+.+.. ..+-+|-+.... ...++.+|.++++++|+.+|
T Consensus 15 ~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 15 FTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 4555666656688777776621 112233344332 23689999999999998875
No 309
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=21.58 E-value=41 Score=33.25 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS 229 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~ 229 (450)
+...|+..+++++++.||++|+.||+|-|+-
T Consensus 91 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 91 NSNFGTADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp CTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 3446778899999999999999999999973
No 310
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=21.45 E-value=44 Score=34.10 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
...|+..+++++++.||++|+.||.|-|+.+.
T Consensus 217 p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 217 PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 34577889999999999999999999997444
No 311
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=21.40 E-value=1.2e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 178 ~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
.++..+++++.+.++|++.+-..|. -..+|..+|++++++++.
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~~----~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGIH----TKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH----HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCHH----HHHHHHHHHHHcCCCEEE
Confidence 4667777866788898886544442 256788899999998774
No 312
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=21.09 E-value=3.2e+02 Score=28.61 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=51.9
Q ss_pred CEEEEeC---CCchhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh
Q 013079 142 GHVVAAR---TLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 217 (450)
Q Consensus 142 d~Vi~~~---~~y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~ 217 (450)
.+|++.. ..|.--...+..++.. .|++|.....+ .++++.++....+..+|.++... +.....+.++++.+++
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~-~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~--~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYAD-LGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDK 673 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHH-HTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECS--SCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHh-CCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeec--HhHHHHHHHHHHHHHh
Confidence 3555443 2344434444444443 79999887665 67777666657788899887754 3344557889988888
Q ss_pred cCC---EEEEe
Q 013079 218 KGV---TVVVD 225 (450)
Q Consensus 218 ~gi---~livD 225 (450)
.|+ ++++=
T Consensus 674 ~G~~~i~VivG 684 (727)
T 1req_A 674 LGRPDILITVG 684 (727)
T ss_dssp TTCTTSEEEEE
T ss_pred cCCCCCEEEEc
Confidence 764 55553
No 313
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=21.06 E-value=43 Score=34.01 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=26.4
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
...|+..+++++++.||++|+.||+|-|+.+
T Consensus 87 p~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 117 (570)
T 1m53_A 87 KEYGTMEDFDSLVAEMKKRNMRLMIDVVINH 117 (570)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 3457788899999999999999999998733
No 314
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=21.00 E-value=77 Score=28.86 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=28.9
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079 177 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224 (450)
Q Consensus 177 d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv 224 (450)
++.+|.+.++..+.++|+++.-.++ .-.+.|.++|++.|+.+++
T Consensus 200 ~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 200 DMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp HHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHHHHHHhcCCceEE
Confidence 4455555564568899997754332 2256788889999977654
No 315
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=20.96 E-value=45 Score=33.75 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
+...|+..+++++++.||++|+.||+|-|+.+
T Consensus 73 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH 104 (557)
T 1zja_A 73 MKEYGTMEDFDRLMAELKKRGMRLMVDVVINH 104 (557)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 33467888999999999999999999998733
No 316
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.89 E-value=1.7e+02 Score=23.80 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=36.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHH-HHHHhcCCE-EEEeCCCC
Q 013079 177 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELS-RLAHDKGVT-VVVDNTFS 229 (450)
Q Consensus 177 d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~-~la~~~gi~-livD~~~~ 229 (450)
+.+.|.+.+...++..|+|..|-|..|+..+ .+..+ .++++.+++ +.+||.++
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 6888998886668899999999887777643 23444 344445765 45798764
No 317
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=20.47 E-value=45 Score=36.63 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.2
Q ss_pred CcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 201 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 201 ptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
|++.+.+++++++.||++|+-||.|-|+.+.
T Consensus 557 ~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt 587 (1014)
T 2ya1_A 557 PEKRIAEFKNLINEIHKRGMGAILDVVYNHT 587 (1014)
T ss_dssp TTHHHHHHHHHHHHHHTTTCEEEEEECTTCC
T ss_pred ccchHHHHHHHHHHHHHcCCEEEEEEecccc
Confidence 3344678899999999999999999998444
No 318
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=20.44 E-value=45 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=26.9
Q ss_pred CCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079 200 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 231 (450)
Q Consensus 200 NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 231 (450)
..-|+..+++++++-||++|+.||.|-|+.+.
T Consensus 214 ~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 214 PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 34577788999999999999999999987443
No 319
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=20.38 E-value=3.4e+02 Score=26.45 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC-eeEEEeC--CCCHHHHHHhhhcCCceEEEEecCCCCc
Q 013079 126 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN-ITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPT 202 (450)
Q Consensus 126 gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-~~v~~v~--~~d~~~l~~ai~~~~t~lv~i~~~~Npt 202 (450)
..+++..... ++++=+-+.+.+|....-...+..+..+ .+ +.+.--+ +.+++.+++.+...-..+|.+- .|-.
T Consensus 281 ~~elid~y~~-lle~ypI~~IEDPl~~dD~eg~a~Lt~~-lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIK--vnqi 356 (441)
T 3qtp_A 281 VDGLIAEYVD-YGKHYPIASIEDPFAEDDWAAWNKFTVE-HGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIK--VNQI 356 (441)
T ss_dssp HHHHHHHHHH-HHHHSCEEEEESCSCTTCHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEEC--GGGT
T ss_pred HHHHHHHHHH-HhhhcceeeecCCCChHHHHHHHHHHHh-cCCceEEeccccccCHHHHHHHHHcCCCCEEEec--cccc
Confidence 4566555443 3333346678887655444444333333 45 4443322 2378899888844445566553 3568
Q ss_pred ccccCHHHHHHHHHhcCCEEEEe
Q 013079 203 LAVANIPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 203 G~v~~l~~I~~la~~~gi~livD 225 (450)
|.+.+..+++++|+++|+.+++=
T Consensus 357 GGITEalkaa~lA~~~G~~vmvs 379 (441)
T 3qtp_A 357 GTLTETFKTIKMAQEKGWGVMAS 379 (441)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEe
Confidence 89999999999999999987763
No 320
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=20.37 E-value=47 Score=34.05 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079 199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 230 (450)
Q Consensus 199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 230 (450)
+...|+..+++++++-||++|+.||+|-|+-+
T Consensus 202 dp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH 233 (599)
T 3bc9_A 202 RTKYGTKGELENAIDALHNNDIKVYFDAVLNH 233 (599)
T ss_dssp SBTTBCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 34468889999999999999999999999733
No 321
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=20.06 E-value=1.5e+02 Score=22.14 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEe
Q 013079 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 225 (450)
Q Consensus 178 ~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD 225 (450)
.++..+++++.+.++|++.+-..|. -..+|..+|+.++++++.-
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~~----~~~~i~~~c~~~~vp~~~~ 67 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASSN----TAKKVTDKCNYYKVPYKKV 67 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH----HHHHHHHHHHHTTCCEEEE
T ss_pred hhhhHHHHhcCceeEEEEecccccc----chhhhcccccccCCCeeee
Confidence 4667778867788899886544433 2567888899999987653
Done!