BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013082
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/461 (64%), Positives = 349/461 (75%), Gaps = 23/461 (4%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
VFEA+ +AGGKLRS+S+DGLIWDEGANT TESE +V L+D LG+REKQQFP+SQ KRY+
Sbjct: 41 VFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEGDVTFLIDSLGLREKQQFPLSQNKRYI 100
Query: 62 VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
RNG P L+P+NPI L+ SNFLS SK Q +LEP LWK ++VS D+ ESV GFFQR
Sbjct: 101 ARNGTPVLLPSNPIDLIKSNFLSTGSKLQXLLEPILWKNKKLSQVS--DSHESVSGFFQR 158
Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIXXXXXXXXXX 181
HFG+EVVD+LIDPFVAGT GDP+SL HSFPELWNLEKR+GSVI GAI
Sbjct: 159 HFGKEVVDYLIDPFVAGTCGGDPDSLSXHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK 218
Query: 182 XXXXXXXXXXXRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
+RQRGSFSFLGG Q VL LS S SA++
Sbjct: 219 KQGPPKTSANKKRQRGSFSFLGGXQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAID 278
Query: 222 NWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
+WS+ S S ++QS SFDAVI TAPLC+VK KI K GN F L+F+PEV Y+PLSV+I
Sbjct: 279 SWSIISASPHKRQSEEESFDAVIXTAPLCDVKSXKIAKRGNPFLLNFIPEVDYVPLSVVI 338
Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
TTFK+ENV+ PLEGFGVLVPSKEQQ+GLKTLGTLFSS FPDR P ++YLYTTFVGGSRN
Sbjct: 339 TTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSXXFPDRAPNNVYLYTTFVGGSRN 398
Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
+ELAKAS ELK+IVTSDL+QLLG EG+P +VNH +WSKAFPLYG +YDSVL+AI+K E
Sbjct: 399 RELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKXEK 458
Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDD 441
NLPG FYAGNHRGGLSVGK+++SGC AA+LVISYLE S D
Sbjct: 459 NLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTD 499
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 201/454 (44%), Gaps = 46/454 (10%)
Query: 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI--REKQQFPISQYK 58
++ E+ R GG + + + G + ++G N+ + E + L L + R + P ++ +
Sbjct: 43 VLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAK-R 101
Query: 59 RYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGF 118
RYV G +P +P A L S+ L ++ ++ E F ++ + E ES+ F
Sbjct: 102 RYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELF-------SRRAPEGVDESLAAF 154
Query: 119 FQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIXXXXXXX 178
+RH G L+D G AGD E L + +FP L +E+ + S+I GAI
Sbjct: 155 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR 214
Query: 179 XXXXXXXXXXXXXXRRQRGSFS-FLGGMQVL--SLSYS-----HDGRS----ALEN--WS 224
+ G+ S F GG+QVL +L+ S H G A E+ W
Sbjct: 215 QAALPAGTAP-----KLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWR 269
Query: 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLD-----FLPEVIYMPLSVI 279
L +++ LS V++ AP ++ L PLD + + Y P++V+
Sbjct: 270 LIIEEHGRRA-ELSVAQVVLAAPAHATAKL-------LRPLDDALAALVAGIAYAPIAVV 321
Query: 280 ITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339
F + P +GFG LVP++EQ+ + LG + +S FP R LY+ VGG+R
Sbjct: 322 HLGFDAGTLPAP-DGFGFLVPAEEQR---RMLGAIHASTTFPFRAEGGRVLYSCMVGGAR 377
Query: 340 NKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKME 399
L + D L + +L+ L GV P+F F W P Y + + AI+
Sbjct: 378 QPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAAL 437
Query: 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVIS 433
LPG GN G+ + I + + A+ +++
Sbjct: 438 QRLPGLHLIGNAYKGVGLNDCIRNAAQLADALVA 471
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/453 (22%), Positives = 194/453 (42%), Gaps = 42/453 (9%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIRE-------KQQFPI 54
+ EA R GGK++++ KDG I + G ++ E + L+ DLG+ Q + +
Sbjct: 39 LVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVL 98
Query: 55 SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKES 114
+ + G IPT +++ S K + ++ L A + +D +S
Sbjct: 99 VNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFIL-----PASKTKDD--QS 151
Query: 115 VGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIXXX 174
+G FF+R G EVV+ LI+P ++G AGD + L + +FP+ + E+++ S+I G
Sbjct: 152 LGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILG----- 206
Query: 175 XXXXXXXXXXXXXXXXXXRRQRGSFSFLG-GMQV--------LSLSYSHDGR--SALENW 223
+++G F L G+Q L L+ + G + L +
Sbjct: 207 ----MKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHS 262
Query: 224 SLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTF 283
C S + + L D+VI+TAP M L + L + ++ + F
Sbjct: 263 GSCYSLELDNGVTLDADSVIVTAPHKAAAGML----SELPAISHLKNMHSTSVANVALGF 318
Query: 284 KKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKEL 343
+ +V+ EG G ++ + + +++ +P P+ L +VG + ++ +
Sbjct: 319 PEGSVQMEHEGTGFVI---SRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESI 375
Query: 344 AKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDS-VLEAIEKMETNL 402
S +++ IV DL++++ + G+P W ++ P Y + + E E + +
Sbjct: 376 VDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAY 435
Query: 403 PGFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435
PG + G G+ + I G A ++YL
Sbjct: 436 PGVYMTGASFEGVGIPDCIDQGKAAVSDALTYL 468
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 181/462 (39%), Gaps = 51/462 (11%)
Query: 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTES-EMEVKGLL--DDLGIREKQQFPI-- 54
++ E+ ER GG +RS+ +G I++ G + + + + LL +LG+ + + P+
Sbjct: 31 VLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGL-DSEVLPVRG 89
Query: 55 ---SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK-SDSAKVSAED 110
+ R++ G +PT L F +P W + K ++
Sbjct: 90 DHPAAQNRFLYVGGALHALPTG-----LRGLLRPSPPFS---KPLFWAGLRELTKPRGKE 141
Query: 111 AKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGA 170
E+V F QR G EV +D G AG+ L +R FP L+ E+ + S++ G
Sbjct: 142 PDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGL 201
Query: 171 IXXXXXXXXXXXXXXXXXXXXXRRQRGSFSFLGGM----QVLSLSYSHDGRSALENWSLC 226
+ Q +S GG+ Q L + G S L +C
Sbjct: 202 LLGAGRTPQPDSALIRQALAERWSQ---WSLRGGLEMLPQALETHLTSRGVSVLRGQPVC 258
Query: 227 -----SSNQEKQSL---GLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSV 278
+ + K SL L D VI P + E+ + PL I +SV
Sbjct: 259 GLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA---PLARALSAITA-VSV 314
Query: 279 IITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFP--DRVPKDLYLYTTFVG 336
+ + + P++GFG LVPS E LG ++ S+ FP D P L + T +G
Sbjct: 315 AVVNLQYQGAHLPVQGFGHLVPSSEDPG---VLGIVYDSVAFPEQDGSPPGLRV-TVMLG 370
Query: 337 GSRNKELAKA----STDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVL 392
GS + L + S + +Q LG++ P+ P Y + L
Sbjct: 371 GSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKL 430
Query: 393 EAIEKMET--NLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432
E+ + T LP AG G++V I SG +AA V+
Sbjct: 431 ESARQFLTAHRLP-LTLAGASYEGVAVNDCIESGRQAAVSVL 471
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/465 (22%), Positives = 181/465 (38%), Gaps = 44/465 (9%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREK-------QQFPI 54
+ EA ER GGK+ + +DG + G ++ + + L++ +G+ EK Q F +
Sbjct: 34 LLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFIL 93
Query: 55 SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKES 114
+ + G IPT+ + L+ + K ++ L SDS ++ +D
Sbjct: 94 DTGGLHPIPKGAVXGIPTDLDLFRQTTLLTEEEKQEV--ADLLLHPSDSLRIPEQDI--P 149
Query: 115 VGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIXXX 174
+G + + G +V+ LI+P ++G AG+ + ++P+ E++ GS+ G
Sbjct: 150 LGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQXSTFATYPQFVANEQKAGSLFEGX---- 205
Query: 175 XXXXXXXXXXXXXXXXXXRRQRGSF-SFLGGMQVLSLSYS---HDGRSALENWSLCSSNQ 230
+ G F S G++ L LE L S +
Sbjct: 206 --RLXRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISRE 263
Query: 231 E-----KQSLGLSF-DAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPL--SVIITT 282
+ K G + D V++T P V + L P LPE+ + + +T
Sbjct: 264 DGRYRLKTDHGPEYADYVLLTIPHPQVVQ--------LLPDAHLPELEQLTTHSTATVTX 315
Query: 283 FKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKE 342
+ P+EG G +V + + T T + D + FVG N
Sbjct: 316 IFDQQQSLPIEGTGFVVNRRAPYS--ITACTAIDQKW--NHSAPDHTVLRAFVGRPGNDH 371
Query: 343 LAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDY-DSVLEAIEKMETN 401
L S + L+Q V DL ++ G +P V P Y + D + E++
Sbjct: 372 LVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLXDGLPAYTVGHADRIQRVREEVLAQ 431
Query: 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKE 446
PG + AG G+ + +AS E + LE+S D+ + E
Sbjct: 432 YPGIYLAGLAYDGVGLPDCVASAKTXIESI--ELEQSHTDESVNE 474
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 296 GVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQ 353
G LV S NG++ G L+S + PD D++ Y SRN + K DE K
Sbjct: 175 GALVASYPFDNGVQATGALYSRSLTPD---DDVFQYLAHTYASRNPNMKKG--DECKN 227
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 37 VKGLLDDLGIREKQQFPIS--QYKRYV--VRNGVPFLIP--TNPIALLT----SNFLSAQ 86
V L ++GI E+ + +S ++ ++ R+G P + P T + LL +N Q
Sbjct: 263 VDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQ 322
Query: 87 SKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPES 146
+ +++ E +W+ +D +V AE+ S G +V + I+ F +P
Sbjct: 323 IE-ELMFELSMWRCNDELRVRAEELHSSSGS--------KVTKYYIE-FWKQIPPNEPYR 372
Query: 147 LVMRHSFPELWNLEKRYGSVIAGAI 171
+++ H +L+N +R ++A +
Sbjct: 373 VILGHVRDKLYNTRERARHLLASGV 397
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI------REKQQFPIS 55
V EA +R GG+ + + DG + + G ++ + + LLD+LG+ RE + IS
Sbjct: 33 VIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYIS 92
Query: 56 QYKRYVVRNGVPFLIPTN 73
G F PTN
Sbjct: 93 SAGERTRYTGDSF--PTN 108
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI------REKQQFPIS 55
V EA +R GG+ + + DG + + G ++ + + LLD+LG+ RE + IS
Sbjct: 33 VIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYIS 92
Query: 56 QYKRYVVRNGVPFLIPTN 73
G F PTN
Sbjct: 93 SAGERTRYTGDSF--PTN 108
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI------REKQQFPIS 55
V EA +R GG+ + + DG + + G ++ + + LLD+LG+ RE + IS
Sbjct: 33 VIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYIS 92
Query: 56 QYKRYVVRNGVPFLIPTN 73
G F PTN
Sbjct: 93 SAGERTRYTGDSF--PTN 108
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI------REKQQFPIS 55
V EA +R GG+ + + DG + + G ++ + + LLD+LG+ RE + IS
Sbjct: 33 VIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYIS 92
Query: 56 QYKRYVVRNGVPFLIPTN 73
G F PTN
Sbjct: 93 SAGERTRYTGDSF--PTN 108
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 349 DELKQIV----TSDLRQLLGVEGDPAFVNHFFWSKAFPL--YGRDYD-SVLEAIEKMETN 401
D+++Q+V D +++L E D VN+ F S P+ +G D + + + METN
Sbjct: 219 DKIEQLVLEEVKGDRKEIL--EIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETN 276
Query: 402 LPGFFYAGN---HRGGLSVGKSIASGCKAAELVISYLEKSSDDK 442
+ GFF AG+ + G +++ IASG A ++ + D K
Sbjct: 277 IEGFFAAGDICTYEGKVNL---IASGFGEAPTAVNNAKAYMDPK 317
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
V EA +R GG+ + + DG + + G ++ + + LLD+LG++ Y RY
Sbjct: 35 VLEARDRVGGRTWTDTIDGAMLEIGGQWVSPDQTVLMELLDELGLK--------MYSRY- 85
Query: 62 VRNG 65
R+G
Sbjct: 86 -RDG 88
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 274 MPLSVIITTFKKENVRRPLEGFGVLVPSK 302
+PL+ ++ K+ N PL+GFG+ P +
Sbjct: 191 LPLNHLVAKLKEYNAAPPLQGFGISAPDQ 219
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 274 MPLSVIITTFKKENVRRPLEGFGVLVPSK 302
+PL+ ++ K+ N PL+GFG+ P +
Sbjct: 191 LPLNHLVAKLKEYNAAPPLQGFGISAPDQ 219
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 274 MPLSVIITTFKKENVRRPLEGFGVLVPSK 302
+PL+ ++ K+ N PL+GFG+ P +
Sbjct: 191 LPLNHLVAKLKEYNAAPPLQGFGISAPDQ 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,694,220
Number of Sequences: 62578
Number of extensions: 516290
Number of successful extensions: 1371
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 16
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)