BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013082
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia
oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/466 (69%), Positives = 374/466 (80%), Gaps = 27/466 (5%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
+FEAD RAGGKL+++ KDGLIWDEGANTMTES+ EV L DDLGIREK Q PISQ KRY+
Sbjct: 70 LFEADSRAGGKLKTVVKDGLIWDEGANTMTESDEEVTSLFDDLGIREKLQLPISQNKRYI 129
Query: 62 VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
R+G+P L+P+NP+ALL SN LSA+SK QI+LEPFLWKK + AKVS E+A+ESV FF+R
Sbjct: 130 ARDGLPVLLPSNPVALLKSNILSAKSKLQIMLEPFLWKKHNGAKVSDENAQESVAEFFER 189
Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
HFG+E VD+LIDPFVAGTS GDP+SL MRH+FPELWN+E R+GSVI+G I+SK S++KEK
Sbjct: 190 HFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEK 249
Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
E K SS KK R RGSFSF GGMQ VLSLSYSH+G E
Sbjct: 250 GGE-KQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKLQSEVLSLSYSHNGSLTSE 308
Query: 222 NWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
NWS+ S SN Q +DAV++TAP+ NVKE+KI K N F LDF+PEV +PLSVII
Sbjct: 309 NWSVSSMSNSTIQDQ--PYDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVII 366
Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
TTFKK NV+RPLEGFGVLVPS EQ NGLKTLGTLFSSMMFPDR P D+YLYTTFVGGSRN
Sbjct: 367 TTFKKTNVKRPLEGFGVLVPSNEQHNGLKTLGTLFSSMMFPDRAPSDVYLYTTFVGGSRN 426
Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
+ELAKASTDELKQIV+SDL+QLLG EG+P FVNHF+WSKAFPLYGR+YDSVL AIEKME
Sbjct: 427 RELAKASTDELKQIVSSDLQQLLGTEGEPTFVNHFYWSKAFPLYGRNYDSVLRAIEKMER 486
Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKE 446
+LPG FYAGNH+GGLSVGKSIASG KAAEL ISYLE +KM +E
Sbjct: 487 DLPGLFYAGNHKGGLSVGKSIASGYKAAELAISYLE---SNKMTEE 529
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/461 (68%), Positives = 368/461 (79%), Gaps = 23/461 (4%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61
VFEA+ +AGGKLRS+S+DGLIWDEGANTMTESE +V L+D LG+REKQQFP+SQ KRY+
Sbjct: 41 VFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYI 100
Query: 62 VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR 121
RNG P L+P+NPI L+ SNFLS SK Q++LEP LWK ++VS D+ ESV GFFQR
Sbjct: 101 ARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVS--DSHESVSGFFQR 158
Query: 122 HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEK 181
HFG+EVVD+LIDPFVAGT GDP+SL M HSFPELWNLEKR+GSVI GAI+SK S + EK
Sbjct: 159 HFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK 218
Query: 182 SAEAKGSSEKKRRQRGSFSFLGGMQ--------------------VLSLSYSHDGRSALE 221
+S K+RQRGSFSFLGGMQ VL LS S SA++
Sbjct: 219 KQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAID 278
Query: 222 NWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280
+WS+ S S ++QS SFDAVIMTAPLC+VK MKI K GN F L+F+PEV Y+PLSV+I
Sbjct: 279 SWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVI 338
Query: 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340
TTFK+ENV+ PLEGFGVLVPSKEQQ+GLKTLGTLFSSMMFPDR P ++YLYTTFVGGSRN
Sbjct: 339 TTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRN 398
Query: 341 KELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMET 400
+ELAKAS ELK+IVTSDL+QLLG EG+P +VNH +WSKAFPLYG +YDSVL+AI+KME
Sbjct: 399 RELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEK 458
Query: 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDD 441
NLPG FYAGNHRGGLSVGK+++SGC AA+LVISYLE S D
Sbjct: 459 NLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTD 499
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum
GN=PPXI PE=2 SV=1
Length = 548
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 228/469 (48%), Gaps = 54/469 (11%)
Query: 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60
MV EA +RAGG + ++ +DG +W+EG N+ S+ + + D G+++ R+
Sbjct: 98 MVTEARDRAGGNITTVERDGYLWEEGPNSFQPSDPMLT-MAVDCGLKDDLVLGDPNAPRF 156
Query: 61 VVRNGVPFLIPTNPIALLTSNFLSAQSKFQ-----IILEPFLWKKSDSAKVSAEDAKESV 115
V+ G +P+ L + +S K + I L P S +ESV
Sbjct: 157 VLWKGKLRPVPSKLTDLAFFDLMSIPGKLRAGFGAIGLRP-----------SPPGHEESV 205
Query: 116 GGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKF 175
F +R+ G EV + LI+PF +G AGDP L M+ +F ++W LE+ GS+I G F
Sbjct: 206 EQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEETGGSIIGGT----F 261
Query: 176 SARKEKSAEAKGSSE---KKRRQRGSFSFLGGMQVLSLSYSHDGRSALE-NWSLCS-SNQ 230
A KE+S+ K + K + + SF G+++L + S S L+ +W L S +
Sbjct: 262 KAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLSWKLSSITKS 321
Query: 231 EKQSLGLSFD-----------AVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVI 279
EK L+++ +++MT P + I + ++ D L Y P+ +
Sbjct: 322 EKGGYHLTYETPEGVVSLQSRSIVMTVP--SYVASNILRPLSVAAADALSNFYYPPVGAV 379
Query: 280 ITTFKKENVRR------PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTT 333
T+ +E +R L+GFG L P + G++TLGT++SS +FP+R PK L
Sbjct: 380 TITYPQEAIRDERLVDGELKGFGQLHP---RTQGVETLGTIYSSSLFPNRAPKGRVLLLN 436
Query: 334 FVGGSRNKELAKASTDELKQIVTSDLRQLL--GVEGDPAFVNHFFWSKAFP--LYGRDYD 389
++GG++N E+ + +L ++V DLR++L DP V W +A P L G D
Sbjct: 437 YIGGAKNPEILSKTESQLVEVVDRDLRKMLIKPKAQDPLVVGVRVWPQAIPQFLVGH-LD 495
Query: 390 SVLEAIEKMETN-LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437
++ A M N L G F GN+ G+++G+ + + A V +L +
Sbjct: 496 TLSTAKAAMNDNGLEGLFLGGNYVSGVALGRCVEGAYEVASEVTGFLSR 544
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1
Length = 471
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 212/454 (46%), Gaps = 46/454 (10%)
Query: 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI--REKQQFPISQYK 58
++ E+ R GG + + + G + ++G N+ + E + L L + R + P ++ +
Sbjct: 36 VLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAK-R 94
Query: 59 RYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGF 118
RYV G +P +P A L S+ L ++ ++ E F ++ + E ES+ F
Sbjct: 95 RYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELF-------SRRAPEGVDESLAAF 147
Query: 119 FQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSAR 178
+RH G L+D G AGD E L + +FP L +E+ + S+I GAI+++ + R
Sbjct: 148 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR 207
Query: 179 KEKSAEAKGSSEKKRRQRGSFS-FLGGMQVL--SLSYS-----HDGRS----ALEN--WS 224
+ +A G++ K G+ S F GG+QVL +L+ S H G A E+ W
Sbjct: 208 Q--AALPAGTAPK---LSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWR 262
Query: 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLD-----FLPEVIYMPLSVI 279
L +++ LS V++ AP ++ L PLD + + Y P++V+
Sbjct: 263 LIIEEHGRRA-ELSVAQVVLAAPAHATAKL-------LRPLDDALAALVAGIAYAPIAVV 314
Query: 280 ITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339
F + P +GFG LVP++EQ+ + LG + +S FP R LY+ VGG+R
Sbjct: 315 HLGFDAGTLPAP-DGFGFLVPAEEQR---RMLGAIHASTTFPFRAEGGRVLYSCMVGGAR 370
Query: 340 NKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKME 399
L + D L + +L+ L GV P+F F W P Y + + AI+
Sbjct: 371 QPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAAL 430
Query: 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVIS 433
LPG GN G+ + I + + A+ +++
Sbjct: 431 QRLPGLHLIGNAYKGVGLNDCIRNAAQLADALVA 464
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp.
japonica GN=PPOX1 PE=2 SV=1
Length = 536
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 212/467 (45%), Gaps = 48/467 (10%)
Query: 1 MVFEADERAGGKLRSISK--DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYK 58
+V EA R GG + + + +G +W+EG N+ S+ V + D G+++ F
Sbjct: 84 LVTEARARPGGNITTAERAGEGYLWEEGPNSFQPSD-PVLTMAVDSGLKDDLVFGDPNAP 142
Query: 59 RYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGF 118
R+V+ G +P+ P L + +S K + L + +ESV F
Sbjct: 143 RFVLWEGKLRPVPSKPGDLPFFDLMSIPGKLRAGLGAL------GVRAPPPGREESVEDF 196
Query: 119 FQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSAR 178
+R+ G EV + LI+PF +G AGDP L M+ +F ++W LE GS+I G IK+ R
Sbjct: 197 VRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGGTIKT-IQER 255
Query: 179 KEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSY-SHDGRSALENWSLCS-SNQEKQSLG 236
+ + + + SF G+ +L + S G +W L S + + +
Sbjct: 256 GKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLSWKLTSITKSDNKGYA 315
Query: 237 LSFD-----------AVIMTAPLCNVKEMKITKGGNLFPL-----DFLPEVIYMPLSVII 280
L ++ V+MT P ++ L PL D L Y P++ +
Sbjct: 316 LVYETPEGVVSVQAKTVVMTIPSYVASDI-------LRPLSSDAADALSIFYYPPVAAVT 368
Query: 281 TTFKKENVRR------PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTF 334
++ KE +R+ L+GFG L P + G++TLGT++SS +FP+R P L +
Sbjct: 369 VSYPKEAIRKECLIDGELQGFGQLHP---RSQGVETLGTIYSSSLFPNRAPAGRVLLLNY 425
Query: 335 VGGSRNKELAKASTDELKQIVTSDLRQLL--GVEGDPAFVNHFFWSKAFPLYGRDYDSVL 392
+GGS N + + EL + V DLR++L DP + W +A P + + L
Sbjct: 426 IGGSTNTGIVSKTESELVEAVDRDLRKMLINPKAVDPLVLGVRVWPQAIPQFLIGHLDHL 485
Query: 393 EAIEKM--ETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437
EA + + G F GN+ G+++G+ + ++A + YL K
Sbjct: 486 EAAKSALGKGGYDGLFLGGNYVAGVALGRCVEGAYESASQISDYLTK 532
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana
GN=PPOX PE=2 SV=1
Length = 537
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 123/465 (26%), Positives = 217/465 (46%), Gaps = 46/465 (9%)
Query: 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60
+V EA +R GG + + ++G +W+EG N+ S+ + ++D G+++ R+
Sbjct: 87 IVTEAKDRVGGNIITREENGFLWEEGPNSFQPSDPMLTMVVDS-GLKDDLVLGDPTAPRF 145
Query: 61 VVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQ 120
V+ NG +P+ L + +S K + + S + +ESV F +
Sbjct: 146 VLWNGKLRPVPSKLTDLPFFDLMSIGGKIRAGFGALGIRPSPPGR------EESVEEFVR 199
Query: 121 RHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKE 180
R+ G EV + LI+PF +G AGDP L M+ +F ++W LE+ GS+I G K+ RK
Sbjct: 200 RNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQNGGSIIGGTFKA-IQERKN 258
Query: 181 KSAEAKGSSEKKRRQRGSFSFLGGMQVLS------------LSYSHDGRSALENWSLCSS 228
+ K + + SF G+++L LS+ G + LE+ +
Sbjct: 259 APKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLT 318
Query: 229 NQEKQSL-GLSFDAVIMTAPLCNVKEMKITKGGNLFPL-----DFLPEVIYMPLSVIITT 282
+ L + +V+MT P G L PL + L ++ Y P++ + +
Sbjct: 319 YETPDGLVSVQSKSVVMTVP-------SHVASGLLRPLSESAANALSKLYYPPVAAVSIS 371
Query: 283 FKKENVRR------PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG 336
+ KE +R L+GFG L P + G++TLGT++SS +FP+R P L ++G
Sbjct: 372 YPKEAIRTECLIDGELKGFGQLHP---RTQGVETLGTIYSSSLFPNRAPPGRILLLNYIG 428
Query: 337 GSRNKELAKASTDELKQIVTSDLRQLL--GVEGDPAFVNHFFWSKAFPLYGRDYDSVLEA 394
GS N + S EL + V DLR++L DP + W +A P + + +L+
Sbjct: 429 GSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVGHFDILDT 488
Query: 395 IEKMETN--LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437
+ T+ G F GN+ G+++G+ + + A V +++ +
Sbjct: 489 AKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSR 533
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168)
GN=hemY PE=1 SV=1
Length = 470
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 202/454 (44%), Gaps = 44/454 (9%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIRE-------KQQFPI 54
+ EA R GGK++++ KDG I + G ++ E + L+ DLG+ Q + +
Sbjct: 39 LVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVL 98
Query: 55 SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKES 114
+ + G IPT +++ S K + ++ L A + +D +S
Sbjct: 99 VNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFIL-----PASKTKDD--QS 151
Query: 115 VGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSK 174
+G FF+R G EVV+ LI+P ++G AGD + L + +FP+ + E+++ S+I G K++
Sbjct: 152 LGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTR 211
Query: 175 FSARKEKSAEAKGSSEK-KRRQRGSFSFLG-GMQV--------LSLSYSHDGR--SALEN 222
+GS ++ +++G F L G+Q L L+ + G + L +
Sbjct: 212 ----------PQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSH 261
Query: 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITT 282
C S + + L D+VI+TAP M L + L + ++ +
Sbjct: 262 SGSCYSLELDNGVTLDADSVIVTAPHKAAAGML----SELPAISHLKNMHSTSVANVALG 317
Query: 283 FKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKE 342
F + +V+ EG G ++ + + +++ +P P+ L +VG + ++
Sbjct: 318 FPEGSVQMEHEGTGFVI---SRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDES 374
Query: 343 LAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDS-VLEAIEKMETN 401
+ S +++ IV DL++++ + G+P W ++ P Y + + E E + +
Sbjct: 375 IVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASA 434
Query: 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435
PG + G G+ + I G A ++YL
Sbjct: 435 YPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYL 468
>sp|Q10062|PPOX_SCHPO Protoporphyrinogen oxidase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hem14 PE=3 SV=1
Length = 490
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 201/484 (41%), Gaps = 69/484 (14%)
Query: 2 VFEADERAGGKLRSI------SKDG-LIWDEGANTMTESEMEVKGLLD---DLGIREK-- 49
++E R GG L+S+ S G +++++G T+ + + LD LGI +K
Sbjct: 30 LYEKGPRLGGWLQSVKIPCADSPTGTVLFEQGPRTLRPAGVAGLANLDLISKLGIEDKLL 89
Query: 50 ---QQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSA--QSKFQIILEPFLWKKSDSA 104
P S RY+ IP++ + + S A ++LEPF K DS
Sbjct: 90 RISSNSP-SAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKSKRDST 148
Query: 105 KVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS-FPELWNLEKRY 163
ESVG F +R FG+ V D ++ + G AGD L M S F L +EK+Y
Sbjct: 149 D-------ESVGSFMRRRFGKNVTDRVMSAMINGIYAGDLNDLSMHSSMFGFLAKIEKKY 201
Query: 164 GSVIAGAIKSKFS----ARKEKSAEAKGSSEKKR-------RQRGSFSFLGGMQVLSLSY 212
G++ G I++ + + EK+ +A +E K + F+F G++ ++LS
Sbjct: 202 GNITLGLIRALLAREILSPAEKALKAALLAEPKTAELSNSMKSTSMFAFKEGIETITLSI 261
Query: 213 SHDGRSALENWSLCSSNQEK-------QSL----GLSFDAVIMTAPLCNVKEMKITKGGN 261
+ D + N + + K QSL G +++ V+ N
Sbjct: 262 A-DELKKMPNVKIHLNKPAKTLVPHKTQSLVDVNGQAYEYVVFA-----------NSSRN 309
Query: 262 LFPLDFLPEVIYMPLSV-IITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMF 320
L L P++ SV ++ + K+ P+ GFG+L+PS N LG +F S
Sbjct: 310 LENLISCPKMETPTSSVYVVNVYYKDPNVLPIRGFGLLIPSCTPNNPNHVLGIVFDS--- 366
Query: 321 PDRVPKDLYLYTTFVGGS---RNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFW 377
P++ T +GGS +N L + +E L+ L + P N
Sbjct: 367 EQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATLQ 426
Query: 378 SKAFPLYGRDYDSVLEAIEK-METNLPG-FFYAGNHRGGLSVGKSIASGCKAAELVISYL 435
P Y + L +++ +E N+ G G+ G+S+G I +G A + S +
Sbjct: 427 QNCIPQYRVGHQDNLNSLKSWIEKNMGGRILLTGSWYNGVSIGDCIMNGHSTARKLASLM 486
Query: 436 EKSS 439
SS
Sbjct: 487 NSSS 490
>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3
SV=1
Length = 532
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 126/511 (24%), Positives = 209/511 (40%), Gaps = 103/511 (20%)
Query: 2 VFEADERAGGKLRSISKDG------LIWDEGANTMTESEMEVKGL--LDDLGIREKQQFP 53
+FE + GG +++ G +I +EG ++ + L + LGI F
Sbjct: 40 IFEKSNKVGGNIQTRIIQGKNKDEKIIVEEGPRSLRALGRGLNTLEFIKRLGISNDIIFS 99
Query: 54 ISQYK-RYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQ------IILEPFLWKKSDSAKV 106
+ ++V+ +G P IP +TS F + F+ I+ EPF K ++V
Sbjct: 100 SANSNGKFVLLDGKPKEIP------MTSLFDIIKFSFKHSIVSSILKEPF---KKVPSQV 150
Query: 107 SAEDAK--ESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYG 164
D ESV FF R G+ + I+P + G GD +L ++ +F LE +G
Sbjct: 151 KEMDPNWDESVHDFFSRRLGKTMTKTFIEPTILGIYGGDYTNLSIKSTFKRAALLEP-FG 209
Query: 165 SVIAGAIKSKFSARKEKSAEAKGSSEKKR------------------------RQRGSFS 200
+I G++ F ++K+K E +KR ++ G
Sbjct: 210 GLILGSL---FKSKKQKQFELDLDKNEKRLLPSKNELTELFDKDTDKTNVFSFKENGLSR 266
Query: 201 FLGGMQVL----SLSYSHDGRSALE------NWSL-CSSNQEKQSLGLSFDAVIMTAPLC 249
+ ++ L SL+ + S +E N +L + N+ Q +D +I T PL
Sbjct: 267 MIQKLKSLIESDSLTKLYLSTSIVEIEKDVTNGTLKVTDNKGNQ---YQYDQLISTIPLN 323
Query: 250 NVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFK-KENVRRPL--EGFGVLVPSKEQQN 306
+ M L+ L L V Y ++VI +K +NV + + +GFG LVPSKE Q+
Sbjct: 324 QLAPMFKKSDSKLYQL--LQSVNYTSIAVINLIYKSNKNVVKIISDKGFGYLVPSKENQS 381
Query: 307 GLKTLGTLFSSMMFPDRV--------------PKDLYLYTTFVGGS-----RNK---ELA 344
+G F S FP+ V KD + T +GG+ RN ++
Sbjct: 382 ---VIGVCFDSNTFPEFVNNNNNNNNDNDNGNEKDQSIITVMIGGNNGIKDRNDNWIDVT 438
Query: 345 KASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPG 404
S D+L I L ++L +E P F N + P Y + +++ I+ T G
Sbjct: 439 NTSKDKLLDIALKHLDKVLDIESSPDFTNVSIYDNGIPHYNIGHQNLINEIQNHITKNYG 498
Query: 405 --FFYAGNHRGGLSVGKSIASGCKAAELVIS 433
GN G+ + SI K+ +L+ S
Sbjct: 499 TTLLLGGNSIDGVGINDSIH---KSKQLINS 526
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1
Length = 477
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 188/462 (40%), Gaps = 51/462 (11%)
Query: 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTES-EMEVKGLL--DDLGIREKQQFPI-- 54
++ E+ ER GG +RS+ +G I++ G + + + + LL +LG+ + + P+
Sbjct: 31 VLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGL-DSEVLPVRG 89
Query: 55 ---SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK-SDSAKVSAED 110
+ R++ G +PT L F +P W + K ++
Sbjct: 90 DHPAAQNRFLYVGGALHALPTG-----LRGLLRPSPPFS---KPLFWAGLRELTKPRGKE 141
Query: 111 AKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGA 170
E+V F QR G EV +D G AG+ L +R FP L+ E+ + S++ G
Sbjct: 142 PDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGL 201
Query: 171 IKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM----QVLSLSYSHDGRSALENWSLC 226
+ + SA + + ++ Q +S GG+ Q L + G S L +C
Sbjct: 202 LLGAGRTPQPDSALIRQALAERWSQ---WSLRGGLEMLPQALETHLTSRGVSVLRGQPVC 258
Query: 227 -----SSNQEKQSL---GLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSV 278
+ + K SL L D VI P + E+ + PL I +SV
Sbjct: 259 GLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA---PLARALSAITA-VSV 314
Query: 279 IITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFP--DRVPKDLYLYTTFVG 336
+ + + P++GFG LVPS E LG ++ S+ FP D P L + T +G
Sbjct: 315 AVVNLQYQGAHLPVQGFGHLVPSSEDPG---VLGIVYDSVAFPEQDGSPPGLRV-TVMLG 370
Query: 337 GSRNKELAKA----STDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVL 392
GS + L + S + +Q LG++ P+ P Y + L
Sbjct: 371 GSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKL 430
Query: 393 EAIEKMET--NLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432
E+ + T LP AG G++V I SG +AA V+
Sbjct: 431 ESARQFLTAHRLP-LTLAGASYEGVAVNDCIESGRQAAVSVL 471
>sp|Q60HD5|PPOX_MACFA Protoporphyrinogen oxidase OS=Macaca fascicularis GN=PPOX PE=2 SV=1
Length = 477
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 186/463 (40%), Gaps = 53/463 (11%)
Query: 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTES-EMEVKGLL--DDLGIREKQQFPI-- 54
++ E ER GG +RS+ +G I++ G + + + + LL +LG+ + + P+
Sbjct: 31 VLVEGSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGL-DSEVLPVRG 89
Query: 55 ---SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK-SDSAKVSAED 110
+ R++ G +PT L F +P W + K ++
Sbjct: 90 DHPAAQNRFLYVGGALHALPTG-----LRGLLRPSPPFS---KPLFWAGLRELTKPRGKE 141
Query: 111 AKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGA 170
E+V F QR G EV +D G AG+ L +R FP L+ E+ + SV+ G
Sbjct: 142 PDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSVLLGL 201
Query: 171 IKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM----QVLSLSYSHDGRSALENWSLC 226
+ + SA + + ++ Q +S GG+ Q L + G S L +C
Sbjct: 202 LLGAGRTPQPDSALIRQALAERWSQ---WSLRGGLEMLPQALETHLTSRGVSVLRGQPVC 258
Query: 227 -----SSNQEKQSL---GLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSV 278
+ + K SL L D VI P + E+ + PL I +SV
Sbjct: 259 GLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA---PLARALSAITA-VSV 314
Query: 279 IITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFP--DRVPKDLYLYTTFVG 336
+ + + P++GFG LVPS E LG ++ S+ FP D P L + T +G
Sbjct: 315 AVVNLQYQGAHLPVQGFGHLVPSSEDPG---VLGIVYDSVAFPEQDGSPPGLRV-TVMLG 370
Query: 337 GSRNKELAKASTDELKQ-----IVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSV 391
GS + L +AS L Q LG++ P+ P Y +
Sbjct: 371 GSWLQTL-EASGCVLSQELFQQRAQEAAAAQLGLKELPSHCLVHLHKNCIPQYTLGHWQK 429
Query: 392 LEAIEKM--ETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432
LE+ + LP AG G++V I SG +AA V+
Sbjct: 430 LESARQFLAAHRLP-LTLAGASYEGVAVNDCIESGRQAAVSVL 471
>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1
Length = 477
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 193/462 (41%), Gaps = 51/462 (11%)
Query: 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTES-EMEVKGLL--DDLGIREKQQFPI-- 54
++ E +R GG +RSI DG I++ G + + + + LL +LG+ E + P+
Sbjct: 31 ILVEGSKRLGGWIRSIRGSDGAIFELGPRGIRPAGALGARTLLLVSELGL-ESEVLPVRG 89
Query: 55 ---SQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKK-SDSAKVSAED 110
+ R++ G +P+ L F +P W + K ++
Sbjct: 90 DHPAAQNRFLYVGGTLHPLPSG-----LRGLLRPSPPFS---KPLFWAGLRELLKPRGKE 141
Query: 111 AKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGA 170
E+V F QR G EV +D G AG+ L +R FP L+ E+ + S++ G
Sbjct: 142 PDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGL 201
Query: 171 IKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLS-YSH---DGRSALENWSLC 226
+ + + S+ + + ++ Q +S GG++VL + ++H G + L +C
Sbjct: 202 LLGAGQSPQPDSSLIRQARAERWSQ---WSLRGGLEVLPQALHNHLASKGVTVLSGQPVC 258
Query: 227 SSNQE-----KQSLG---LSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSV 278
+ + K SLG L D +I P + ++ + PL + I +SV
Sbjct: 259 GLSLQPEGRWKVSLGDSSLEADHIISAIPASELSKLLPAEAA---PLARILSTIKA-VSV 314
Query: 279 IITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFP--DRVPKDLYLYTTFVG 336
+ + P++GFG LVPS E LG ++ S+ FP D P L + T +G
Sbjct: 315 AVVNLQYRGACLPVQGFGHLVPSSEDPT---VLGIVYDSVAFPEQDGNPPSLRV-TVMLG 370
Query: 337 GSRNKELAKA----STDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVL 392
G ++L A S + +Q LG++ P+ P Y + L
Sbjct: 371 GYWLQKLKAAGHQLSPELFQQQAQEAAATQLGLKEPPSHCLVHLHKNCIPQYTIGHWQKL 430
Query: 393 EAIEKMET--NLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432
++ + T LP AG G++V I SG +AA V+
Sbjct: 431 DSAMQFLTAQRLP-LTLAGASYEGVAVNDCIESGRQAAVAVL 471
>sp|O32434|PPOX_PROFF Protoporphyrinogen oxidase OS=Propionibacterium freudenreichii
subsp. freudenreichii GN=hemY PE=3 SV=1
Length = 527
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 101/473 (21%), Positives = 180/473 (38%), Gaps = 64/473 (13%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFP-------- 53
V E+D+ GGK+ + +DG + ++G ++ L+++LG+ ++ P
Sbjct: 54 VVESDDHFGGKVVTDRRDGFLVEQGPDSFVAYRPAALKLIEELGLSDQVIAPGGGRRVSL 113
Query: 54 ISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKE 113
+S+ K + G+ ++PT +T+ LS K + L+ + ++ D
Sbjct: 114 LSRGKLRPMPAGMGMVLPTRMWPFVTTTVLSWPDKIRAGLDLVIPRR-------LPDHDV 166
Query: 114 SVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKS 173
++G F ++ G +V DP V G + L + P L + E+ + S++ ++
Sbjct: 167 AIGAFLRQRLGDGIVRRFADPMVGGIYGAGIDELSLDAVLPSLRDNERDHRSLMVASLAG 226
Query: 174 -----------------------KFSARKEKSAEAKGSSEKK-RRQRGSFSFLGGMQVLS 209
+ S + SA +G + R RG L + L
Sbjct: 227 GRASRRAARQRAAQNNAQQNSSHQNSTGQNNSAGTRGPAASPFRTLRGGLGQL--IDALV 284
Query: 210 LSYSHDGRSALENWSLCSSNQEKQSLG----LSFDAVIMTAPLCNVKEMKITKGGNLFPL 265
G L N S+ ++ L L DAV++ + + + L P
Sbjct: 285 DQLRAGGVELLVNTSVDLLGRDGVHLSDGRVLPADAVVLAGGVASSARL-------LRPQ 337
Query: 266 DFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKE--QQNGLKTLGTLFSSMMFPDR 323
LP + + + ++ P+ F V S+ + + G SS+ F R
Sbjct: 338 --LPAAARALAQIPLASTTIVSLAWPVSAFDVAPDSQGWLEADAGPVSGLTASSIKFAGR 395
Query: 324 VPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPL 383
P L FV R L A DEL V +R LLGV G+P W K P
Sbjct: 396 APDGSVLMRVFVPDKRGP-LTDAPDDELLSAVIDHVRPLLGVHGEPGLTQITRWHKVMPK 454
Query: 384 YGRDYDSVLEAIEKMETNL----PGFFYAGNHRGGLSVGKSIASGCKAAELVI 432
Y + LE +++ L P + AG+ G+ + I+ +A+ VI
Sbjct: 455 YTVGH---LERAAVVDSTLAEQRPTWAVAGSALHGVGLPDCISDARHSADEVI 504
>sp|Q50008|PPOX_MYCLE Protoporphyrinogen oxidase OS=Mycobacterium leprae (strain TN)
GN=hemY PE=3 SV=1
Length = 451
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 167/459 (36%), Gaps = 80/459 (17%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQF-----PI-- 54
+F+ +R GG LR+ G D GA EV LL +LG+ E+Q+ P+
Sbjct: 34 LFDPGDRLGGVLRTECVGGQPMDLGAEAFLLRRPEVPALLAELGLSERQRATTDARPLIY 93
Query: 55 SQYKRYVVRNGVPFLIPTNP--IALLTSNFLSAQSKFQIILEPFLWKK-SDSAKVSAEDA 111
SQ + + + IP++ +A L + A+ + + P W+ SD A
Sbjct: 94 SQQRLHSLPPDTVAGIPSSATSVAGLVDDATVARIGAEAV-RPLSWEPGSDPAMAE---- 148
Query: 112 KESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAI 171
FG + V L+DP + G AG ++ +R P + ++ GA
Sbjct: 149 ------LVADRFGEQAVARLVDPLLGGVYAGSAATIGLRAGAPSV------AAALDCGAT 196
Query: 172 KSKFSARKEKSAEAKGS-------------SEKKRRQRGSFSFLGGMQVLSLSYSHDGRS 218
+ R+ A G E RR R + V+ L G +
Sbjct: 197 SLMEAVRQGLPPVAAGPVFGALDGGYQVLIDELVRRSRLQWV---AATVVGLDRGTCGWT 253
Query: 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAP-------LCNVKEMKITKGGNLFPLDFLPEV 271
+++ C S D VI+ P L + + +
Sbjct: 254 LVDDTGAC----------WSADGVILAVPAPRLVRLLQQIAPRTVAAASRIVSASSAVVA 303
Query: 272 IYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLY 331
+ +P TTF + + GVLV S E+ L+ SS + + D L
Sbjct: 304 LSVPRD---TTFPQNS--------GVLVASGER---LRAKAVTLSSRKW--GLQGDTQLV 347
Query: 332 TTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSV 391
G ++ + AS DEL SDL + V DP V W A P YG +
Sbjct: 348 RLSFGKFGDQVASTASDDELLAWAVSDLAAVFDVTVDPVDVCVQRWIDAMPQYGPGH--- 404
Query: 392 LEAIEKMETNL-PGFFYAGNHRGGLSVGKSIASGCKAAE 429
+ + ++ L P AG+H G+ V I++ +A E
Sbjct: 405 ADLVAEVRAGLPPTLVVAGSHMDGIGVPACISAAGRAIE 443
>sp|P0A5A7|PPOX_MYCTU Protoporphyrinogen oxidase OS=Mycobacterium tuberculosis GN=hemY
PE=3 SV=1
Length = 452
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 346 ASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNL-PG 404
AS D+L DL + GV DP V W +A P YG + V + ++ L P
Sbjct: 359 ASDDQLLAWAADDLVTVFGVAVDPVDVRVRRWIEAMPQYGPGHADV---VAELRAGLPPT 415
Query: 405 FFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436
AG++ G+ V + + +A VI L+
Sbjct: 416 LAVAGSYLDGIGVPACVGAAGRAVTSVIEALD 447
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQ-----QFPI-- 54
+FE +R GG LR+ G D GA E+ LL +LG+ ++Q P+
Sbjct: 34 LFEPADRLGGVLRTEHIGGQPMDLGAEAFVLRRPEMPALLAELGLSDRQLASTGARPLIY 93
Query: 55 SQYKRYVVRNGVPFLIPTNP--IALLTSNFLSAQSKFQIILEPFLWK-KSDSAKVSAEDA 111
SQ + + + IP++ +A L + A+ + PF W+ SD A
Sbjct: 94 SQQRLHPLPPQTVVGIPSSAGSMAGLVDDATLARIDAEAA-RPFTWQVGSDPA------- 145
Query: 112 KESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMR 150
V FG +VV +DP ++G AG ++ +R
Sbjct: 146 ---VADLVADRFGDQVVARSVDPLLSGVYAGSAATIGLR 181
>sp|P0A5A8|PPOX_MYCBO Protoporphyrinogen oxidase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=hemY PE=3 SV=1
Length = 452
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 346 ASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNL-PG 404
AS D+L DL + GV DP V W +A P YG + V + ++ L P
Sbjct: 359 ASDDQLLAWAADDLVTVFGVAVDPVDVRVRRWIEAMPQYGPGHADV---VAELRAGLPPT 415
Query: 405 FFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436
AG++ G+ V + + +A VI L+
Sbjct: 416 LAVAGSYLDGIGVPACVGAAGRAVTSVIEALD 447
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQ-----QFPI-- 54
+FE +R GG LR+ G D GA E+ LL +LG+ ++Q P+
Sbjct: 34 LFEPADRLGGVLRTEHIGGQPMDLGAEAFVLRRPEMPALLAELGLSDRQLASTGARPLIY 93
Query: 55 SQYKRYVVRNGVPFLIPTNP--IALLTSNFLSAQSKFQIILEPFLWK-KSDSAKVSAEDA 111
SQ + + + IP++ +A L + A+ + PF W+ SD A
Sbjct: 94 SQQRLHPLPPQTVVGIPSSAGSMAGLVDDATLARIDAEAA-RPFTWQVGSDPA------- 145
Query: 112 KESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMR 150
V FG +VV +DP ++G AG ++ +R
Sbjct: 146 ---VADLVADRFGDQVVARSVDPLLSGVYAGSAATIGLR 181
>sp|P18487|A37C_DROME Protein anon-37Cs OS=Drosophila melanogaster GN=anon-37Cs PE=2 SV=3
Length = 504
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 240 DAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYM----PLSVIITTFKKENVRRPLEG- 294
D +I T PL +K PLD + + + PL + ++ K+ + R L+G
Sbjct: 286 DHIICTLPLGVLKSFAGVLFRPTLPLDKMLAIRNLGFGNPLKIYLSY--KKPIGRWLKGS 343
Query: 295 ---FGVLV-PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDE 350
G L+ PS EQQ ++ +VP ++ VGG +E+ K +E
Sbjct: 344 LRPLGTLLNPSVEQQPER----NWTQQVVEISQVPSSQHVLEVHVGGGYYEEIEKLPDEE 399
Query: 351 LKQIVTSDLRQLLGVEGDP---AFVNHFFWSKAFPLYGRDY---DSVLEAIEKMETNL-- 402
L + +T LR+ + P + + + A L GR Y +S ++++ L
Sbjct: 400 LLEQITGLLRRCVSSHLVPYPQELLRSNWSTSACYLGGRPYFSTNSSARDVQRLAAPLGE 459
Query: 403 --PGFFYAGNH---RGGLSVGKSIASGCKAAELVISYLEKS 438
PG +AG+ RG ++ + +SG + A+ +I Y KS
Sbjct: 460 KSPGLLFAGDATSLRGFGTIDAARSSGIREAQRIIDYYLKS 500
>sp|Q58931|TRXB_METJA Putative thioredoxin reductase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1536 PE=3 SV=1
Length = 301
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 396 EKMETNLPGFFYAGNHRGG-LSVGKSIASGCKAAELVISYLEK 437
E TN+ G + G+ RGG + V K++ GC A +I YL+K
Sbjct: 258 ENCRTNIDGIYAVGDVRGGVMQVAKAVGDGCVAMANIIKYLQK 300
>sp|Q8RTI2|RBL2_MAGMG Ribulose bisphosphate carboxylase OS=Magnetospirillum
magnetotacticum GN=cbbM PE=3 SV=1
Length = 459
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 103 SAKVSAEDAKESV--GGFFQRHFGREV--VDFLIDPFVAGTSAGDPESLVMRHSFPELWN 158
SA ++A+D E + G F FG V FL+D FVAG +A R +FP+ +
Sbjct: 229 SANITADDPAEMIARGNFILETFGENASHVAFLVDGFVAGPTA----VTTCRRNFPDTFL 284
Query: 159 LEKRYGSVIAGAIKSKFSAR 178
R G GAI S+ S R
Sbjct: 285 HYHRAGH---GAITSRQSKR 301
>sp|O96566|A37C_DROSI Protein anon-37Cs (Fragment) OS=Drosophila simulans GN=anon-37Cs
PE=3 SV=1
Length = 501
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 240 DAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYM----PLSVIITTFKKENVRRPLEG- 294
D +I T PL +K PLD + + + PL + ++ K+ + R L+G
Sbjct: 283 DHIICTLPLGVLKSFAGVLFRPTLPLDKMLAIRNLGFGNPLKIYLSY--KKPIGRWLKGS 340
Query: 295 ---FGVLV-PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDE 350
G L+ PS EQQ ++ +VP ++ VGG +E+ K DE
Sbjct: 341 LRPLGTLLNPSAEQQ----PERNWTQQVVEISQVPSSQHVLEVHVGGGYYEEIEKLPDDE 396
Query: 351 LKQIVTSDLRQLLGVEGDP---AFVNHFFWSKAFPLYGRDYDSVLEA---IEKMETNL-- 402
L + +T LR+ + P + + + A L GR Y S + + ++++ L
Sbjct: 397 LLEQITGLLRRCVSNNLVPYPQELLRSNWSTSACYLGGRPYFSTINSARDVQRLAAPLGE 456
Query: 403 --PGFFYAGNH---RGGLSVGKSIASGCKAAELVISYLEKSS 439
PG +AG+ G ++ + +SG + A+ +I + K +
Sbjct: 457 KSPGLLFAGDATSLNGFGTIDAARSSGIREAQRIIDFYLKRA 498
>sp|Q2W3S5|RBL2_MAGSA Ribulose bisphosphate carboxylase OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=cbbM PE=3 SV=1
Length = 459
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 103 SAKVSAEDAKESV--GGFFQRHFGREV--VDFLIDPFVAGTSAGDPESLVMRHSFPELWN 158
SA ++A+D E + G F FG V FL+D FVAG +A R +FP+ +
Sbjct: 229 SANITADDPAEMIARGQFILDTFGENASHVAFLVDGFVAGPTA----VTTCRRNFPDTFL 284
Query: 159 LEKRYGSVIAGAIKSKFSAR 178
R G GAI S+ S R
Sbjct: 285 HYHRAGH---GAITSRQSKR 301
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 77 LLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFV 136
+ +N +S Q+K I+ P + K++ VS + KE+VG +E V ++ P V
Sbjct: 220 MKPNNIISPQTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQV 279
Query: 137 AGTSAGD 143
+ G+
Sbjct: 280 KKENVGN 286
>sp|P40974|PUO_KOCRO Putrescine oxidase OS=Kocuria rosea GN=puo PE=1 SV=1
Length = 478
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 2 VFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQF 52
V EA +R GG+ S + DG + G ++ + E+ L+D+LG+ Q++
Sbjct: 42 VLEARDRVGGRTWSKTVDGAFLEIGGQWISPDQTELLALVDELGLETYQRY 92
>sp|Q92375|TRXB_SCHPO Thioredoxin reductase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=trr1 PE=1 SV=1
Length = 322
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 400 TNLPGFFYAGNHRGGL--SVGKSIASGCKAAELVISYLEKSSD 440
T++PGFF AG+ + + S SGC+AA L + YLE+ D
Sbjct: 278 TSIPGFFAAGDVQDKVFRQAITSAGSGCQAALLAMHYLEELED 320
>sp|P04711|CAPP1_MAIZE Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=PEP1 PE=1 SV=2
Length = 970
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 37 VKGLLDDLGIREKQQFPIS--QYKRYV--VRNGVPFLIP--TNPIALLT----SNFLSAQ 86
V L ++GI E+ + +S ++ ++ R+G P + P T + LL +N Q
Sbjct: 263 VDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQ 322
Query: 87 SKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPES 146
+ +++ E +W+ +D +V AE+ S G +V + I+ F +P
Sbjct: 323 IE-ELMFELSMWRCNDELRVRAEELHSSSGS--------KVTKYYIE-FWKQIPPNEPYR 372
Query: 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQ 206
+++ H +L+N +R ++A + E SAE+ +S ++ FL ++
Sbjct: 373 VILGHVRDKLYNTRERARHLLASGV-------SEISAESSFTSIEE--------FLEPLE 417
Query: 207 VLSLSYSHDGRSALENWSLCSSNQEKQSLGLSF 239
+ S G A+ + SL ++ + GLS
Sbjct: 418 LCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSL 450
>sp|Q82FD5|RECF_STRAW DNA replication and repair protein RecF OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=recF PE=3 SV=1
Length = 373
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 175 FSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHDGRS----ALENWSLCSSNQ 230
+AR + A + E+ +QR + ++ +L+ H GRS L+ W +
Sbjct: 140 ITARSPRMAGVRSDYERVLKQRNTL-----LKTAALARRHGGRSMDLSTLDVWDQHLARA 194
Query: 231 EKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLP---------EVIYMPLSVIIT 281
+ L D + PL + ++ GG L++ P + +Y L +
Sbjct: 195 GAELLAQRLDLIAALQPLADKAYEQLAPGGGPIALEYKPSAPGEAHTRDALYEQLMAALA 254
Query: 282 TFKKENVRRPLEGFGVLVPSKEQ 304
+K+ + R G ++ P +++
Sbjct: 255 EARKQEIER---GVTLVGPQRDE 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,013,951
Number of Sequences: 539616
Number of extensions: 7007981
Number of successful extensions: 17878
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 17823
Number of HSP's gapped (non-prelim): 44
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)