Query 013082
Match_columns 450
No_of_seqs 119 out of 1239
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1276 Protoporphyrinogen oxi 100.0 1.1E-54 2.5E-59 403.4 32.0 420 1-432 40-490 (491)
2 COG1232 HemY Protoporphyrinoge 100.0 5.1E-53 1.1E-57 410.5 34.0 400 1-432 29-443 (444)
3 TIGR00562 proto_IX_ox protopor 100.0 7.5E-52 1.6E-56 419.8 39.2 413 1-436 33-461 (462)
4 PLN02576 protoporphyrinogen ox 100.0 9.7E-52 2.1E-56 422.3 39.1 430 1-443 40-495 (496)
5 PRK12416 protoporphyrinogen ox 100.0 9.1E-50 2E-54 404.1 40.4 404 1-436 34-462 (463)
6 PRK11883 protoporphyrinogen ox 100.0 4.7E-44 1E-48 361.9 40.5 400 1-433 29-450 (451)
7 PRK07208 hypothetical protein; 100.0 1.4E-37 3.1E-42 316.5 31.3 406 1-434 31-460 (479)
8 PRK07233 hypothetical protein; 100.0 4E-36 8.7E-41 302.5 30.2 384 1-436 26-432 (434)
9 TIGR03467 HpnE squalene-associ 100.0 2.3E-35 5E-40 295.6 24.6 372 1-433 14-419 (419)
10 PLN02268 probable polyamine ox 100.0 7E-34 1.5E-38 285.9 22.6 364 1-435 27-434 (435)
11 TIGR02732 zeta_caro_desat caro 100.0 1.6E-31 3.4E-36 269.6 21.5 387 1-432 26-474 (474)
12 PLN02487 zeta-carotene desatur 100.0 9.3E-31 2E-35 265.7 26.3 394 1-437 102-555 (569)
13 PLN02568 polyamine oxidase 100.0 4.5E-31 9.7E-36 268.1 23.6 405 1-436 37-536 (539)
14 PLN03000 amine oxidase 100.0 1.7E-30 3.7E-35 269.2 26.2 375 1-441 211-629 (881)
15 PLN02612 phytoene desaturase 100.0 2.1E-30 4.6E-35 266.2 25.0 385 1-437 120-550 (567)
16 TIGR02731 phytoene_desat phyto 100.0 4.7E-30 1E-34 259.4 26.2 380 1-431 26-452 (453)
17 PLN02529 lysine-specific histo 100.0 2.2E-29 4.7E-34 260.5 25.7 374 1-437 187-600 (738)
18 PLN02328 lysine-specific histo 100.0 3.8E-29 8.2E-34 259.7 23.8 384 1-440 265-684 (808)
19 PLN02676 polyamine oxidase 100.0 4.8E-28 1E-32 244.4 22.2 377 1-439 54-477 (487)
20 KOG0685 Flavin-containing amin 100.0 1.1E-28 2.5E-33 234.1 15.8 376 1-438 49-494 (498)
21 PF01593 Amino_oxidase: Flavin 100.0 1.3E-29 2.8E-34 254.9 6.5 392 1-432 18-450 (450)
22 PLN02976 amine oxidase 100.0 3.5E-27 7.6E-32 250.5 22.7 399 1-440 720-1191(1713)
23 COG1231 Monoamine oxidase [Ami 100.0 3.3E-27 7.2E-32 224.6 18.8 384 1-437 34-449 (450)
24 KOG0029 Amine oxidase [Seconda 99.9 9.8E-24 2.1E-28 210.8 19.3 222 200-437 213-461 (501)
25 TIGR02734 crtI_fam phytoene de 99.9 1.4E-21 2.9E-26 200.2 27.5 394 1-439 25-496 (502)
26 TIGR02733 desat_CrtD C-3',4' d 99.9 5.7E-21 1.2E-25 195.1 21.2 392 1-434 28-491 (492)
27 COG3380 Predicted NAD/FAD-depe 99.9 3.5E-22 7.7E-27 176.3 8.3 195 219-435 132-331 (331)
28 COG2907 Predicted NAD/FAD-bind 99.8 1.4E-18 2.9E-23 158.8 16.3 358 1-432 34-422 (447)
29 TIGR02730 carot_isom carotene 99.8 9.2E-17 2E-21 164.0 25.1 391 1-435 27-492 (493)
30 TIGR00031 UDP-GALP_mutase UDP- 99.7 5.5E-15 1.2E-19 143.3 20.5 336 1-432 28-376 (377)
31 COG3349 Uncharacterized conser 99.6 1.5E-14 3.2E-19 141.2 15.4 392 1-437 27-465 (485)
32 COG1233 Phytoene dehydrogenase 99.5 1.8E-13 3.9E-18 138.9 14.1 386 1-435 30-483 (487)
33 PTZ00363 rab-GDP dissociation 99.2 5.6E-09 1.2E-13 104.0 26.2 209 1-247 31-287 (443)
34 COG0562 Glf UDP-galactopyranos 99.0 2.2E-07 4.8E-12 85.3 21.1 335 1-433 28-372 (374)
35 KOG4254 Phytoene desaturase [C 98.5 4.7E-06 1E-10 80.0 15.4 241 194-444 252-555 (561)
36 PF13450 NAD_binding_8: NAD(P) 98.3 5.6E-07 1.2E-11 65.0 2.9 44 1-44 23-68 (68)
37 PF00996 GDI: GDP dissociation 97.8 0.00035 7.5E-09 69.3 12.6 208 2-245 32-284 (438)
38 PRK13977 myosin-cross-reactive 97.7 0.00016 3.5E-09 73.5 8.7 134 1-158 53-203 (576)
39 PF07156 Prenylcys_lyase: Pren 97.3 0.02 4.4E-07 55.8 18.2 130 110-278 67-213 (368)
40 KOG1439 RAB proteins geranylge 96.8 0.09 2E-06 50.6 16.0 89 2-92 32-141 (440)
41 COG5044 MRS6 RAB proteins gera 94.8 0.096 2.1E-06 49.9 7.1 178 2-213 34-236 (434)
42 PRK07494 2-octaprenyl-6-methox 91.2 3.7 8.1E-05 40.5 12.8 76 343-433 235-316 (388)
43 TIGR01984 UbiH 2-polyprenyl-6- 88.1 12 0.00026 36.7 13.6 33 403-435 276-314 (382)
44 PRK08773 2-octaprenyl-3-methyl 84.8 18 0.00038 35.7 12.9 34 403-436 282-321 (392)
45 PRK08850 2-octaprenyl-6-methox 82.8 21 0.00045 35.5 12.4 33 403-435 282-320 (405)
46 TIGR03862 flavo_PP4765 unchara 81.0 1.5 3.3E-05 43.0 3.4 35 401-435 335-375 (376)
47 PRK07608 ubiquinone biosynthes 80.8 50 0.0011 32.3 14.3 32 403-434 280-317 (388)
48 TIGR01988 Ubi-OHases Ubiquinon 80.6 46 0.001 32.5 13.9 34 403-436 276-315 (385)
49 PRK04176 ribulose-1,5-biphosph 79.7 2.1 4.6E-05 39.7 3.8 38 400-437 211-256 (257)
50 PRK07364 2-octaprenyl-6-methox 79.4 54 0.0012 32.5 14.2 33 403-435 294-332 (415)
51 COG1635 THI4 Ribulose 1,5-bisp 78.9 2.1 4.5E-05 38.3 3.1 39 399-437 215-261 (262)
52 TIGR00292 thiazole biosynthesi 78.8 2.4 5.1E-05 39.3 3.8 37 400-436 210-254 (254)
53 PRK09126 hypothetical protein; 78.5 59 0.0013 31.9 14.0 33 403-435 280-318 (392)
54 PRK08020 ubiF 2-octaprenyl-3-m 78.5 51 0.0011 32.4 13.5 33 403-435 281-319 (391)
55 PF03275 GLF: UDP-galactopyran 75.8 14 0.00031 32.7 7.5 114 130-287 1-118 (204)
56 PRK05732 2-octaprenyl-6-methox 75.3 86 0.0019 30.7 14.2 33 403-435 282-320 (395)
57 PLN02661 Putative thiazole syn 70.6 5 0.00011 38.9 3.7 39 399-437 283-329 (357)
58 PRK12769 putative oxidoreducta 69.6 6.1 0.00013 42.2 4.6 38 400-437 615-653 (654)
59 PRK12831 putative oxidoreducta 67.8 7.3 0.00016 39.6 4.6 38 400-437 424-462 (464)
60 COG2081 Predicted flavoprotein 65.7 6.2 0.00013 38.6 3.3 36 400-435 366-407 (408)
61 PRK13984 putative oxidoreducta 64.7 7.2 0.00016 41.2 4.0 37 400-436 566-602 (604)
62 TIGR01989 COQ6 Ubiquinone bios 64.3 1.6E+02 0.0034 29.6 13.4 34 403-436 333-372 (437)
63 TIGR01316 gltA glutamate synth 63.3 8.8 0.00019 38.8 4.1 36 400-435 413-449 (449)
64 PRK12809 putative oxidoreducta 63.1 8.7 0.00019 40.9 4.2 38 400-437 598-636 (639)
65 PRK12810 gltD glutamate syntha 62.4 11 0.00023 38.5 4.6 38 400-437 428-466 (471)
66 PRK08849 2-octaprenyl-3-methyl 61.2 1.7E+02 0.0037 28.7 13.7 30 403-432 279-314 (384)
67 PRK11749 dihydropyrimidine deh 60.4 11 0.00023 38.4 4.1 39 400-438 415-454 (457)
68 PRK05714 2-octaprenyl-3-methyl 60.2 1.8E+02 0.0039 28.7 14.4 32 403-434 285-322 (405)
69 COG0644 FixC Dehydrogenases (f 60.0 14 0.0003 36.7 4.8 35 403-437 269-309 (396)
70 PF03486 HI0933_like: HI0933-l 59.4 6.8 0.00015 39.0 2.5 28 402-429 375-408 (409)
71 PRK10157 putative oxidoreducta 57.8 12 0.00026 37.6 4.0 35 403-437 295-337 (428)
72 PRK12775 putative trifunctiona 57.1 15 0.00033 41.3 4.9 41 399-439 717-758 (1006)
73 PRK12770 putative glutamate sy 56.1 17 0.00037 35.3 4.7 36 401-436 314-350 (352)
74 TIGR01317 GOGAT_sm_gam glutama 56.1 15 0.00033 37.5 4.5 39 399-437 441-480 (485)
75 PRK12778 putative bifunctional 55.4 15 0.00032 40.0 4.4 38 400-437 713-751 (752)
76 PRK12771 putative glutamate sy 54.5 16 0.00034 38.3 4.3 38 400-437 407-445 (564)
77 PF06100 Strep_67kDa_ant: Stre 53.2 14 0.00031 37.3 3.5 106 1-122 33-153 (500)
78 TIGR01318 gltD_gamma_fam gluta 52.5 20 0.00044 36.4 4.6 37 400-436 429-466 (467)
79 TIGR02028 ChlP geranylgeranyl 52.1 23 0.00049 35.2 4.8 35 403-437 270-310 (398)
80 TIGR01292 TRX_reduct thioredox 52.0 14 0.0003 34.6 3.2 35 401-435 264-300 (300)
81 PRK12779 putative bifunctional 51.9 18 0.00039 40.4 4.4 43 400-442 590-633 (944)
82 COG0654 UbiH 2-polyprenyl-6-me 51.7 2.5E+02 0.0053 27.6 16.2 175 219-436 134-317 (387)
83 PRK07333 2-octaprenyl-6-methox 51.3 2.5E+02 0.0054 27.6 14.3 33 403-435 280-318 (403)
84 PF13454 NAD_binding_9: FAD-NA 50.9 16 0.00036 30.8 3.1 26 218-247 129-154 (156)
85 PRK06617 2-octaprenyl-6-methox 50.9 1.8E+02 0.0039 28.4 11.0 29 403-431 273-307 (374)
86 PF01134 GIDA: Glucose inhibit 48.3 24 0.00052 34.8 4.2 37 401-437 354-390 (392)
87 PRK12814 putative NADPH-depend 48.2 24 0.00051 37.7 4.5 38 400-437 464-502 (652)
88 PRK10015 oxidoreductase; Provi 48.0 21 0.00046 35.8 3.9 34 403-436 295-336 (429)
89 PRK09853 putative selenate red 47.7 21 0.00045 39.9 4.0 42 400-441 805-847 (1019)
90 TIGR00275 flavoprotein, HI0933 47.0 11 0.00024 37.5 1.7 28 401-428 366-399 (400)
91 TIGR02023 BchP-ChlP geranylger 47.0 30 0.00065 34.1 4.8 35 403-437 264-304 (388)
92 PLN00093 geranylgeranyl diphos 44.9 27 0.00058 35.4 4.1 35 403-437 309-349 (450)
93 TIGR03315 Se_ygfK putative sel 44.7 26 0.00057 39.2 4.2 36 400-435 803-839 (1012)
94 TIGR01372 soxA sarcosine oxida 42.8 32 0.00068 38.8 4.6 38 402-439 438-475 (985)
95 PRK05335 tRNA (uracil-5-)-meth 39.2 40 0.00086 33.8 4.1 36 401-436 329-364 (436)
96 PRK08013 oxidoreductase; Provi 36.4 4.3E+02 0.0093 26.0 13.7 33 403-435 282-320 (400)
97 PRK06185 hypothetical protein; 36.0 1E+02 0.0022 30.4 6.7 35 403-437 284-324 (407)
98 PRK12835 3-ketosteroid-delta-1 35.3 41 0.00089 35.4 3.8 43 399-441 524-576 (584)
99 PRK08274 tricarballylate dehyd 35.0 39 0.00083 34.3 3.5 37 400-436 416-462 (466)
100 PRK10262 thioredoxin reductase 33.3 23 0.00049 33.9 1.4 41 400-440 277-319 (321)
101 TIGR01816 sdhA_forward succina 31.9 45 0.00097 34.9 3.4 37 400-436 351-397 (565)
102 PF13738 Pyr_redox_3: Pyridine 31.8 36 0.00079 29.7 2.4 26 219-248 111-136 (203)
103 PRK11445 putative oxidoreducta 31.7 57 0.0012 31.6 4.0 33 403-435 264-302 (351)
104 PRK12844 3-ketosteroid-delta-1 31.7 48 0.001 34.6 3.6 35 400-434 505-549 (557)
105 TIGR02032 GG-red-SF geranylger 30.9 45 0.00098 30.9 3.1 29 403-431 261-295 (295)
106 PRK09078 sdhA succinate dehydr 30.2 56 0.0012 34.5 3.8 36 400-435 383-428 (598)
107 COG1249 Lpd Pyruvate/2-oxoglut 30.0 59 0.0013 32.9 3.8 35 399-433 299-334 (454)
108 PRK15317 alkyl hydroperoxide r 29.2 40 0.00087 34.8 2.5 40 400-439 474-515 (517)
109 PRK06116 glutathione reductase 29.1 54 0.0012 33.1 3.4 35 399-433 292-327 (450)
110 PRK06263 sdhA succinate dehydr 28.6 61 0.0013 33.7 3.8 36 400-435 359-403 (543)
111 PRK06481 fumarate reductase fl 28.4 55 0.0012 33.7 3.3 36 400-435 459-503 (506)
112 TIGR00136 gidA glucose-inhibit 28.2 83 0.0018 33.2 4.5 35 402-436 357-391 (617)
113 COG1148 HdrA Heterodisulfide r 28.1 1.6E+02 0.0034 30.1 6.1 38 399-436 508-545 (622)
114 KOG2415 Electron transfer flav 27.8 38 0.00083 33.5 1.9 24 415-438 402-425 (621)
115 PRK12842 putative succinate de 27.7 65 0.0014 33.8 3.8 37 399-435 521-567 (574)
116 TIGR01421 gluta_reduc_1 glutat 27.6 61 0.0013 32.8 3.5 35 399-433 292-327 (450)
117 KOG4405 GDP dissociation inhib 27.5 1.8E+02 0.0039 28.9 6.2 109 20-133 129-244 (547)
118 PRK07121 hypothetical protein; 27.5 60 0.0013 33.2 3.5 35 400-434 447-490 (492)
119 PRK11259 solA N-methyltryptoph 27.2 5.7E+02 0.012 24.6 13.5 76 349-434 285-360 (376)
120 PRK06069 sdhA succinate dehydr 27.1 59 0.0013 34.1 3.3 35 401-435 370-414 (577)
121 PRK08641 sdhA succinate dehydr 27.1 67 0.0014 33.8 3.7 37 399-435 365-410 (589)
122 PTZ00306 NADH-dependent fumara 27.0 59 0.0013 37.4 3.5 40 400-439 858-906 (1167)
123 PF01494 FAD_binding_3: FAD bi 26.8 73 0.0016 30.4 3.8 36 403-438 291-332 (356)
124 COG0492 TrxB Thioredoxin reduc 26.6 51 0.0011 31.4 2.5 41 398-438 261-303 (305)
125 PLN02852 ferredoxin-NADP+ redu 26.6 52 0.0011 33.7 2.7 38 400-437 384-423 (491)
126 TIGR01424 gluta_reduc_2 glutat 26.3 66 0.0014 32.5 3.5 35 399-433 290-325 (446)
127 PRK06134 putative FAD-binding 26.1 62 0.0013 34.0 3.3 37 400-436 526-572 (581)
128 TIGR02485 CobZ_N-term precorri 26.1 73 0.0016 32.0 3.7 35 400-434 385-429 (432)
129 PRK09231 fumarate reductase fl 25.9 70 0.0015 33.6 3.6 36 400-435 369-414 (582)
130 PRK05945 sdhA succinate dehydr 25.8 82 0.0018 33.1 4.1 36 400-435 368-413 (575)
131 PRK12834 putative FAD-binding 25.7 66 0.0014 33.5 3.4 35 399-433 501-548 (549)
132 PRK07843 3-ketosteroid-delta-1 24.8 67 0.0014 33.6 3.2 34 400-433 512-555 (557)
133 COG1135 AbcC ABC-type metal io 24.7 5.9E+02 0.013 24.4 8.9 80 343-435 110-191 (339)
134 PRK12839 hypothetical protein; 24.3 74 0.0016 33.4 3.5 36 400-435 523-568 (572)
135 TIGR01812 sdhA_frdA_Gneg succi 23.7 82 0.0018 32.9 3.7 36 400-435 357-402 (566)
136 TIGR03143 AhpF_homolog putativ 23.0 69 0.0015 33.4 2.9 38 401-438 272-311 (555)
137 PRK09077 L-aspartate oxidase; 23.0 91 0.002 32.4 3.8 36 400-435 364-409 (536)
138 KOG2960 Protein involved in th 23.0 1E+02 0.0022 27.6 3.4 40 399-438 273-320 (328)
139 PRK06175 L-aspartate oxidase; 22.9 87 0.0019 31.5 3.5 36 400-435 342-387 (433)
140 PRK08958 sdhA succinate dehydr 22.7 87 0.0019 33.0 3.6 36 400-435 378-423 (588)
141 PRK07803 sdhA succinate dehydr 22.3 99 0.0022 32.9 4.0 36 400-435 403-447 (626)
142 PRK05675 sdhA succinate dehydr 22.1 1E+02 0.0023 32.2 4.1 36 400-435 360-405 (570)
143 TIGR00551 nadB L-aspartate oxi 22.1 89 0.0019 32.0 3.5 36 400-435 344-389 (488)
144 TIGR03140 AhpF alkyl hydropero 21.8 40 0.00086 34.8 0.9 38 400-437 475-514 (515)
145 PRK07057 sdhA succinate dehydr 21.6 96 0.0021 32.7 3.7 35 401-435 382-426 (591)
146 PTZ00139 Succinate dehydrogena 21.4 1E+02 0.0022 32.7 3.8 36 400-435 400-445 (617)
147 PTZ00318 NADH dehydrogenase-li 21.3 1.3E+02 0.0028 30.1 4.5 38 400-437 306-349 (424)
148 PRK07818 dihydrolipoamide dehy 21.0 90 0.002 31.7 3.3 35 399-433 300-335 (466)
149 PRK12843 putative FAD-binding 20.8 1E+02 0.0022 32.3 3.7 36 400-435 527-572 (578)
150 COG2509 Uncharacterized FAD-de 20.5 1E+02 0.0022 31.0 3.3 36 401-436 448-484 (486)
151 PRK05249 soluble pyridine nucl 20.5 96 0.0021 31.3 3.4 35 399-433 299-334 (461)
152 PRK06467 dihydrolipoamide dehy 20.3 93 0.002 31.7 3.2 35 399-433 301-336 (471)
153 PLN00128 Succinate dehydrogena 20.3 1.2E+02 0.0027 32.2 4.2 37 400-436 421-467 (635)
154 PF05834 Lycopene_cycl: Lycope 20.2 8.1E+02 0.018 23.9 14.3 27 220-250 116-142 (374)
155 PLN02507 glutathione reductase 20.2 1E+02 0.0022 31.7 3.4 35 399-433 327-362 (499)
156 PRK14727 putative mercuric red 20.0 97 0.0021 31.6 3.2 35 399-433 310-345 (479)
No 1
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=403.37 Aligned_cols=420 Identities=37% Similarity=0.607 Sum_probs=340.3
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChH---HHHHHHHHcCCCccccccC----CCCceEEEECCEEeecCC
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEM---EVKGLLDDLGIREKQQFPI----SQYKRYVVRNGVPFLIPT 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~---~~~~l~~~lGl~~~~~~~~----~~~~~~~~~~G~~~~~p~ 72 (450)
|||||++|+||+++|.+ -+|+.||.|+..+.+.++ ++++|+++||++++++..+ ..+++|+|++|++..+|.
T Consensus 40 ~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~ 119 (491)
T KOG1276|consen 40 TLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPS 119 (491)
T ss_pred EEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCc
Confidence 57999999999999954 679999999999997765 8999999999998765422 356799999999999999
Q ss_pred ChhHhhhcc--cCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhh
Q 013082 73 NPIALLTSN--FLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMR 150 (450)
Q Consensus 73 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~ 150 (450)
++...+.+. .+...-...++.++++.... ....|+||++|++|+||+++.+++++||++++|++|+.++|++
T Consensus 120 sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~------~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk 193 (491)
T KOG1276|consen 120 SLVGSLKFSLQPFGKPLLEAFLRELFRKKVS------DPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMK 193 (491)
T ss_pred ccccccccccCcccchhHHHHHhhhccccCC------CCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHH
Confidence 887755432 22112223556676764322 4678999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----c------C----
Q 013082 151 HSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D------G---- 216 (450)
Q Consensus 151 ~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~------~---- 216 (450)
+.|+.+|+.|+++||++.|+++..+.....+.++..++.....+++.++.++||++++++++.. + +
T Consensus 194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~ 273 (491)
T KOG1276|consen 194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS 273 (491)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence 9999999999999999999997755444444444333333334667788999999999988742 1 1
Q ss_pred --Cc-cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCC
Q 013082 217 --RS-ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLE 293 (450)
Q Consensus 217 --~~-~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~ 293 (450)
.. ..++|.+++.+.+ ..+....++++.|+|...++.++ ++..+.+.+++..++|.++.+|++.|.++.+..+.+
T Consensus 274 ~~sk~~~~~~~~tl~~~~-~~~~~~~~~~~~t~~~~k~a~ll--~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~ 350 (491)
T KOG1276|consen 274 GNSKSRSGNWSLTLVDHS-GTQRVVVSYDAATLPAVKLAKLL--RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQ 350 (491)
T ss_pred cccccccCCceeEeEcCC-CceeeeccccccccchHHhhhhc--cccchhhhhhhhcCCCCceEEEEEeccCcccccccc
Confidence 11 2456888887653 23455666667799999999997 767777888999999999999999998865555789
Q ss_pred CeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCc--CCCCCHHHHHHHHHHHHHHHhCCCCCCce
Q 013082 294 GFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKE--LAKASTDELKQIVTSDLRQLLGVEGDPAF 371 (450)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~--~~~~~~eel~~~~~~~L~~~~~~~~~p~~ 371 (450)
|||+++|. +..|+.+.+|+||||..||.+.|.+ .+++++++.+... +...+.||+++.+.++|.+++++..+|..
T Consensus 351 GFG~LvPs-~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~ 427 (491)
T KOG1276|consen 351 GFGLLVPS-EPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVS 427 (491)
T ss_pred cceeeccC-CCCCCCceeEEEeecccCCCCCCCc--eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCccc
Confidence 99999996 3345789999999999999887755 6667777665443 34568999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHhhCC--CeEEecCCcCCCChHHHHHHHHHHHHHHH
Q 013082 372 VNHFFWSKAFPLYGRDYDSVLEAIEKMETNLP--GFFYAGNHRGGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 372 ~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~--~l~~aG~~~~g~~~~~ai~SG~~aA~~i~ 432 (450)
..++-|++|+|||.+||.+.+.+++.+.+..+ +|+++|.|+.|.++.+||+||+++|.+++
T Consensus 428 ~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 428 VNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 99999999999999999999998887777666 79999999999999999999999998875
No 2
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=5.1e-53 Score=410.53 Aligned_cols=400 Identities=28% Similarity=0.445 Sum_probs=328.8
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~ 80 (450)
||||+++|+||.++|+..+|+.+|.|+|.|+...+++.+|++|||+++.+.++.. ...|+|.+|+++++|.+....+..
T Consensus 29 ~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~~~-~~~~i~~~gkl~p~P~~~i~~ip~ 107 (444)
T COG1232 29 TLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWNST-ARKYIYYDGKLHPIPTPTILGIPL 107 (444)
T ss_pred EEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhccCCc-ccceEeeCCcEEECCccceeecCC
Confidence 6899999999999999999999999999999766899999999999999887543 445899999999999876333322
Q ss_pred ccC-ChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHH
Q 013082 81 NFL-SAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (450)
Q Consensus 81 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~ 159 (450)
... +...+.+++.+....... ...+|.||++|++++||+++++++++|++.++|+.+++++|+...++.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~------~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~ 181 (444)
T COG1232 108 LLLSSEAGLARALQEFIRPKSW------EPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA 181 (444)
T ss_pred ccccchhHHHHHHHhhhcccCC------CCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh
Confidence 111 134455555555443222 3578999999999999999999999999999999999999999889999999
Q ss_pred HHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------CC------ccCCCeEEE
Q 013082 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------GR------SALENWSLC 226 (450)
Q Consensus 160 ~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~~------~~~~~~~v~ 226 (450)
++.++++++|+.+...... ......+++++||+++|+++++.. +. +...++.+.
T Consensus 182 e~~~~s~~~g~~~~~~~~~-------------~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~ 248 (444)
T COG1232 182 ERKYGSLLRGAKKEGLPKQ-------------SLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIV 248 (444)
T ss_pred hhhhcchhhhhhhccCccc-------------ccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEE
Confidence 9999999899876532211 011223569999999999988631 11 123456666
Q ss_pred ecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCC
Q 013082 227 SSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQN 306 (450)
Q Consensus 227 ~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~ 306 (450)
+.+|. .++||.||+|+|++.+..++ ++ ......+..++|+++++|.++++++..+..++++|+++++++
T Consensus 249 ~~~g~----~~~~D~VI~t~p~~~l~~ll--~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~--- 317 (444)
T COG1232 249 DVGGE----KITADGVISTAPLPELARLL--GD--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDD--- 317 (444)
T ss_pred EcCCc----eEEcceEEEcCCHHHHHHHc--CC--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCC---
Confidence 67664 79999999999999999997 54 445667888999999999999998644445688999998876
Q ss_pred CCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCC
Q 013082 307 GLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGR 386 (450)
Q Consensus 307 ~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~ 386 (450)
..+.+++|+|++||...|.|+.++.++++..+......++|||+++.++++|.+++++..+|.++.++||++++|+|.+
T Consensus 318 -~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~v 396 (444)
T COG1232 318 -PYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEV 396 (444)
T ss_pred -CcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCccch
Confidence 2389999999999999998999999888877666666788999999999999999999888889999999999999999
Q ss_pred CHHHHHHHHHHHHh-hCCCeEEecCCcCCCChHHHHHHHHHHHHHHH
Q 013082 387 DYDSVLEAIEKMET-NLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 387 g~~~~~~~~~~~~~-~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~ 432 (450)
||.+.+.+++..+. .++||+++|.|+.|.++++||.+|..||++++
T Consensus 397 G~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 397 GHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred hHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 99999888876544 56899999999998999999999999999886
No 3
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=7.5e-52 Score=419.81 Aligned_cols=413 Identities=27% Similarity=0.476 Sum_probs=332.0
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEEC-CEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-GVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~-G~~~~~p~~~~~~~~ 79 (450)
+|||+++|+|||++|.+.+|+.+|+|+|+|+.+++.+.+|+++||+.+.+.. ...+.+|++.+ |+++++|.++..+++
T Consensus 33 ~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~ 111 (462)
T TIGR00562 33 TLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVLVS-DATGQRYVLVNRGKLMPVPTKIAPFVK 111 (462)
T ss_pred EEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccccc-CCCCceEEEECCCceecCCCChHHHhc
Confidence 5899999999999999999999999999999888899999999999876543 23345777776 999999988888877
Q ss_pred cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHH
Q 013082 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (450)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~ 159 (450)
+.++++.+++++..+.+... ....++|+++|+++++|++++++++.|++.++|+.+++++|+.++++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~--------~~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~ 183 (462)
T TIGR00562 112 TGLFSLGGKLRAGMDFIRPA--------SPGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQT 183 (462)
T ss_pred CCCCCchhhHHhhhhhccCC--------CCCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHH
Confidence 77777777777665444311 1245699999999999999999999999999999999999999999999888
Q ss_pred HHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------C------CccCCCeEE
Q 013082 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RSALENWSL 225 (450)
Q Consensus 160 ~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~~~~~~~v 225 (450)
++.+++++.++......+.. .....+....+..+++++||+++|+++++.. + ...+++|.|
T Consensus 184 ~~~~~s~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v 258 (462)
T TIGR00562 184 EQKHGSLILGMKKTRNLPQG-----SGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTL 258 (462)
T ss_pred HHhcCcHHHHHHhhcccCcc-----ccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEE
Confidence 88888887776422100000 0000000011222568999999999877421 1 123466888
Q ss_pred EecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCC
Q 013082 226 CSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQ 305 (450)
Q Consensus 226 ~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~ 305 (450)
++++|+ ++.||+||+|+|++++..|+ ++.+++..+.+.+++|.++.+|++.|+++.|..+..+++++.+..+
T Consensus 259 ~~~~g~----~~~ad~VI~t~P~~~~~~ll--~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~-- 330 (462)
T TIGR00562 259 ELDNGV----TVETDSVVVTAPHKAAAGLL--SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSS-- 330 (462)
T ss_pred EECCCc----EEEcCEEEECCCHHHHHHHh--cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCC--
Confidence 877774 78999999999999999997 6555566778999999999999999988766555577888887654
Q ss_pred CCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCC
Q 013082 306 NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYG 385 (450)
Q Consensus 306 ~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~ 385 (450)
...+.+++|+|+++|.+.|.+..+|++++++..+..+.+++++++++.++++|.++++++.+|.++.+++|++++|+|.
T Consensus 331 -~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~ 409 (462)
T TIGR00562 331 -KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYH 409 (462)
T ss_pred -CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCC
Confidence 2467889999999998888888888899887666677789999999999999999999876799999999999999999
Q ss_pred CCHHHHHHHHHHH-HhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 386 RDYDSVLEAIEKM-ETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 386 ~g~~~~~~~~~~~-~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+||...++.++.. ....+||++||+|+.|.++++||.||+++|++|++.+-
T Consensus 410 ~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 410 VGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred CChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 9999888877653 34467999999999999999999999999999988753
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=9.7e-52 Score=422.26 Aligned_cols=430 Identities=46% Similarity=0.726 Sum_probs=340.5
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~ 80 (450)
+||||++|+|||++|.+.+|+.+|.|+|+|+..++.+.+++++ |+.+.+++......+|++.+|+++++|.++.+++..
T Consensus 40 ~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 118 (496)
T PLN02576 40 LVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTF 118 (496)
T ss_pred EEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhheecCCCCceEEEEECCEEEEcCCChHHhcCc
Confidence 5899999999999999999999999999999888888888888 998876654444567888899999999988887777
Q ss_pred ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHH
Q 013082 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (450)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~ 160 (450)
+++++.+|++++...+...... ...+++|+++|+++++|++++++|++|++.++|+.+++++|+.++++.++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e 193 (496)
T PLN02576 119 DLLSAPGKIRAGLGAFGWKRPP-----PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLE 193 (496)
T ss_pred CcCChhHHHHHhHHHhhccCCC-----CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHH
Confidence 8888888888776655432211 23578999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHhhhhhhhhhh-hhhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------ccCCC-eE
Q 013082 161 KRYGSVIAGAIKSKFSARKEK-SAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------SALEN-WS 224 (450)
Q Consensus 161 ~~~gsl~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~~~~~-~~ 224 (450)
+.+|+++.+++.......... ....+.. ........+++++|||++|+++++.. +. +.+++ |.
T Consensus 194 ~~~gs~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~ 272 (496)
T PLN02576 194 KRGGSIIGGAIKAIQEAKKNPKPEPRDPR-LPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYS 272 (496)
T ss_pred HhcCcHHHHHHHhhhhhcccccccccccc-cccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEE
Confidence 999998888754321100000 0000000 00001233578999999999887521 11 12344 77
Q ss_pred EEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCC------CCCCeeEE
Q 013082 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRR------PLEGFGVL 298 (450)
Q Consensus 225 v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~------~~~~~g~~ 298 (450)
|++.++. +.+++.||+||+|+|++++..|+ .+..|+..+.+.+++|.++.+|++.|++++|+. +..++|++
T Consensus 273 v~~~~~~-g~~~~~ad~VI~a~P~~~l~~ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l 349 (496)
T PLN02576 273 LTYDTPE-GKVNVTAKAVVMTAPLYVVSEML--RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQL 349 (496)
T ss_pred EEEecCC-CceeEEeCEEEECCCHHHHHHHh--cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEE
Confidence 7665321 11368999999999999999997 555666778889999999999999999877654 34678888
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCC--CCceEEeec
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEG--DPAFVNHFF 376 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~--~p~~~~v~~ 376 (450)
.++.+ +...++++|.|..+|++.|++..++++|+++..+..+.+++++++++.++++|++++|... .|..+.+++
T Consensus 350 ~~~~~---~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~ 426 (496)
T PLN02576 350 HPRKQ---GVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRV 426 (496)
T ss_pred ccCCC---CCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeE
Confidence 77654 3467889999999998888877788888887766778889999999999999999998654 677788999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhC--CCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccchhhh
Q 013082 377 WSKAFPLYGRDYDSVLEAIEKMETNL--PGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKM 443 (450)
Q Consensus 377 w~~a~p~~~~g~~~~~~~~~~~~~~~--~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~~ 443 (450)
|++++|+|.+||...++.++..+... +||++||||+.|.++++||.||.++|++|++.+.....-||
T Consensus 427 w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~~~~~~~~ 495 (496)
T PLN02576 427 WPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLESSAYKKM 495 (496)
T ss_pred cCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999988877777655554 79999999999999999999999999999999887766665
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=9.1e-50 Score=404.09 Aligned_cols=404 Identities=21% Similarity=0.364 Sum_probs=322.0
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecC--------C
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIP--------T 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p--------~ 72 (450)
+||||++|+|||++|.+.+|+.+|+|+|+|+.+++.+.+|+++||+.+.+.+. ....+|++.+|+++++| .
T Consensus 34 ~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~p~ 112 (463)
T PRK12416 34 ILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEEMVYN-ETGISYIYSDNTLHPIPSDTIFGIPM 112 (463)
T ss_pred EEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccceecC-CCCceEEEECCeEEECCCCCeecCCC
Confidence 59999999999999999999999999999998889999999999998776543 33457777888877654 3
Q ss_pred ChhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc
Q 013082 73 NPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (450)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~ 152 (450)
++..++..+++++.+|++++.+.+.... ...+++|+.+|+++++++++++++++|++.++|+.+++++|+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~ 185 (463)
T PRK12416 113 SVESLFSSTLVSTKGKIVALKDFITKNK-------EFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMAST 185 (463)
T ss_pred ChHHhhcCCcCCHHHHHHhhhhhccCCC-------CCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHh
Confidence 4455666677888888887777654221 235789999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------C------Cc
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RS 218 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~ 218 (450)
++.+..+++.+++++.++........ ......+++++|||++|+++|+.. + ..
T Consensus 186 ~~~~~~~~~~~~s~~~~~~~~~~~~~-------------~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~ 252 (463)
T PRK12416 186 LPYLLDYKNKYGSIIKGFEENKKQFQ-------------SAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK 252 (463)
T ss_pred hHHHHHHHHhcCcHHHHHHHhhhccC-------------CCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE
Confidence 99988888889998877643210000 001223568999999999887531 1 11
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~ 298 (450)
.+++|.|++.+|+ ++.||+||+|+|++++.+|+ . .|++.+.+.++.|.++.+|++.|+++.|..+.+++|++
T Consensus 253 ~~~~~~v~~~~g~----~~~ad~VI~a~p~~~~~~ll--~--~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l 324 (463)
T PRK12416 253 QGDRYEISFANHE----SIQADYVVLAAPHDIAETLL--Q--SNELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFI 324 (463)
T ss_pred cCCEEEEEECCCC----EEEeCEEEECCCHHHHHhhc--C--CcchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEE
Confidence 3456888877774 68999999999999999997 2 23445567788999999999999976554345679999
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCC--CCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeec
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGG--SRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFF 376 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~--~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~ 376 (450)
+++.+ +....++.|.|++|+...|++..++.+++++ ..++.+.+++++|+.+.++++|+++||+..+|..+.+++
T Consensus 325 ~~~~~---~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~ 401 (463)
T PRK12416 325 VTENS---DLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTN 401 (463)
T ss_pred eeCCC---CCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEE
Confidence 88765 3456778899988988766555666667653 455567788999999999999999999888899999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHH-HhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 377 WSKAFPLYGRDYDSVLEAIEKM-ETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 377 w~~a~p~~~~g~~~~~~~~~~~-~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
|++++|+|.+||...++.++.. ..+.++|++||+++.|.++++||.||++||++|++.++
T Consensus 402 W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 402 WKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred ccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888777653 34568999999999999999999999999999987653
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=4.7e-44 Score=361.92 Aligned_cols=400 Identities=25% Similarity=0.433 Sum_probs=302.2
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCC-------
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~------- 73 (450)
+||||++|+|||++|.+.+|+.+|+|+|+|+..++.+.+++++||+.+.+.... .+..+++.+|+++.+|..
T Consensus 29 ~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~~~~ 107 (451)
T PRK11883 29 TLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVANT-TGQSYIYVNGKLHPIPPGTVMGIPT 107 (451)
T ss_pred EEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceecCC-CCcceEEECCeEEECCCCCeeccCC
Confidence 699999999999999999999999999999888888999999999987654322 234577889998777643
Q ss_pred -hhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc
Q 013082 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (450)
Q Consensus 74 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~ 152 (450)
+..++...+++..++++...+... ... ...+++|+++|++++++++.++.++.|++.++|+.+++++|+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 180 (451)
T PRK11883 108 SIAPFLFAGLVSPIGKLRAAADLRP-PRW------KPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRAT 180 (451)
T ss_pred CchhhhcCCCCCHHHHHHhhCcccC-CCC------CCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHh
Confidence 122222345555555555444311 110 235789999999999999999999999999999999999999988
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------c
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------S 218 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~ 218 (450)
++.+...+..+++++.++.......+ .......++++||+++|++++... +. .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 247 (451)
T PRK11883 181 FPQLAQAEDKYGSLLRGMRKALPKEK-------------KKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK 247 (451)
T ss_pred HHHHHHHHHhcCcHHHHHHhhccccC-------------CCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE
Confidence 87776666667777655543210000 001223458999999999887521 11 1
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~ 298 (450)
.+++|.|++++|+ ++.||+||+|+|++++.+++ .+ |...+.+++++|.++.+|++.|++++ +....+++++
T Consensus 248 ~~~~~~v~~~~g~----~~~~d~vI~a~p~~~~~~l~--~~--~~~~~~~~~~~~~~~~~v~l~~~~~~-~~~~~~~~~~ 318 (451)
T PRK11883 248 SGDGYEIVLSNGG----EIEADAVIVAVPHPVLPSLF--VA--PPAFALFKTIPSTSVATVALAFPESA-TNLPDGTGFL 318 (451)
T ss_pred cCCeEEEEECCCC----EEEcCEEEECCCHHHHHHhc--cC--hhHHHHHhCCCCCceEEEEEEecccc-CCCCCceEEE
Confidence 2456778887774 78999999999999999996 32 34556778899999999999999874 2234557777
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccC
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWS 378 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~ 378 (450)
++.++ +.++.+++|+++++|...|++..++..+.+........+++++++++.++++|++++|+..+|.++.+++|.
T Consensus 319 ~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~ 395 (451)
T PRK11883 319 VARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWK 395 (451)
T ss_pred ecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecC
Confidence 76543 246777889988888878877777666654433334457899999999999999999987788899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHH
Q 013082 379 KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 379 ~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~ 433 (450)
+++|.|.+|+...++.++.....++|||+||+|+.|.++++|+.||+++|++|+.
T Consensus 396 ~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 396 EAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred ccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHHh
Confidence 9999999999876666654333367999999999888999999999999999875
No 7
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=316.51 Aligned_cols=406 Identities=15% Similarity=0.111 Sum_probs=272.5
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~ 80 (450)
+|||+++++||+++|.+.+|+.+|.|+|+|+..++++.+|++++|+.+.+.. .....+++.+|+.+.+|.+..+.+.
T Consensus 31 ~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~l~- 107 (479)
T PRK07208 31 TVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFLL--RPRLSRIYYRGKFFDYPLKAFDALK- 107 (479)
T ss_pred EEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcccc--ccccceEEECCEEecCCcchhHHHH-
Confidence 5899999999999999999999999999999888999999999997544432 1234567789999888877555552
Q ss_pred ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHH
Q 013082 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (450)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~ 160 (450)
.+++..+.+++.+.+..... ...+++|+++|+.+++|++++++++.|++.++|+.+++++|+.|+++++.
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~--- 177 (479)
T PRK07208 108 -NLGLWRTAKCGASYLKARLR------PRKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIK--- 177 (479)
T ss_pred -hCCHhHHHHHHHHHHHHhcC------CCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCccc---
Confidence 35555566655554332111 12468999999999999999999999999999999999999998765542
Q ss_pred HhcCChHHHHHhhhhhhhhh-hhhhhcCchhhhcCCccceEeccchHHHHHhcccc----------CC------ccCCCe
Q 013082 161 KRYGSVIAGAIKSKFSARKE-KSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----------GR------SALENW 223 (450)
Q Consensus 161 ~~~gsl~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----------~~------~~~~~~ 223 (450)
.+++ .+.+...+..... ........ ......+.+++||+++|.++|... +. ..++++
T Consensus 178 --~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~ 251 (479)
T PRK07208 178 --GLSL-GKAIRNALRRSLGLKRRNKEVE---TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGR 251 (479)
T ss_pred --CCCH-HHHHHHHhhhcccccccCCCcc---ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcE
Confidence 2222 1111110000000 00000000 000123457899999999877421 11 123343
Q ss_pred --EEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecC
Q 013082 224 --SLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPS 301 (450)
Q Consensus 224 --~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~ 301 (450)
.+++.+..+....+.||+||+|+|++.+..++ .++.+++..+.++.++|.++.+|++.++++... ...+ +++++
T Consensus 252 v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~--~~~~-~~~~~ 327 (479)
T PRK07208 252 IAVVVVNDTDGTEETVTADQVISSMPLRELVAAL-DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLF--PDNW-IYIHD 327 (479)
T ss_pred EEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc-CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCC--CCce-EEecC
Confidence 22222211112358899999999999999987 223334455667889999999999999876421 1223 33333
Q ss_pred CCCCCCCceEEEEeccCCCCCCCCCCc-EEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC--CCCCceEEeeccC
Q 013082 302 KEQQNGLKTLGTLFSSMMFPDRVPKDL-YLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV--EGDPAFVNHFFWS 378 (450)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~~~~~~p~g~-~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~--~~~p~~~~v~~w~ 378 (450)
.. ..+..+...++..|...|+|. ..+.+.........+++++++++++.++++|.++ ++ ..+|+.+.+++|+
T Consensus 328 ~~----~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l-~~~~~~~~~~~~v~r~~ 402 (479)
T PRK07208 328 PD----VKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL-GLIRPADVEDGFVVRVP 402 (479)
T ss_pred CC----CccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc-CCCChhheeEEEEEEec
Confidence 22 122222222333355567765 3332211112223455789999999999999996 53 3567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc--CCCChHHHHHHHHHHHHHHHHH
Q 013082 379 KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR--GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 379 ~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~--~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++|+|.+||...+..++.++++.+||++||++. ...++++|+.||.++|+.|+..
T Consensus 403 ~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 403 KAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred CcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 9999999999988877765666778999999863 3467999999999999999876
No 8
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=4e-36 Score=302.54 Aligned_cols=384 Identities=19% Similarity=0.213 Sum_probs=271.5
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~ 80 (450)
+|||+++++|||++|++.+|+.+|.|+|+++..++++.+++++||+.+.+.+.. .... ++.+|+.++++ ++..++.+
T Consensus 26 ~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~ 102 (434)
T PRK07233 26 TVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE-TKTG-YYVDGKLYPLG-TPLELLRF 102 (434)
T ss_pred EEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc-CceE-EEECCeEecCC-CHHHHHcC
Confidence 589999999999999999999999999999988899999999999987655432 2233 45678766553 34555555
Q ss_pred ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHH
Q 013082 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (450)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~ 160 (450)
+.++..+++++....+....... ....+++|+++|+.++++++.++.|++|++.++|+.+++++|+.+++..+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 179 (434)
T PRK07233 103 PHLSLIDKFRLGLLTLLARRIKD---WRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG 179 (434)
T ss_pred CCCCHHHHHHhHHHHHhhhhccc---ccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh
Confidence 66666777765443221111000 024578999999999999999999999999999999999999988755443210
Q ss_pred HhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc----------C------CccCCCeE
Q 013082 161 KRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----------G------RSALENWS 224 (450)
Q Consensus 161 ~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----------~------~~~~~~~~ 224 (450)
. ... .......++++||+++|.++|... + ...++++.
T Consensus 180 ----~--~~~---------------------~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~ 232 (434)
T PRK07233 180 ----N--RRY---------------------SLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVT 232 (434)
T ss_pred ----c--ccc---------------------ccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceE
Confidence 0 000 000123568999999998887521 1 11234454
Q ss_pred EEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCC
Q 013082 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQ 304 (450)
Q Consensus 225 v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~ 304 (450)
+...++. +++||+||+|+|++.+.+++ ++.++...+.++++.|.++.++++.++++..+ .+....+..+
T Consensus 233 ~~~~~~~----~~~ad~vI~a~p~~~~~~ll--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~- 301 (434)
T PRK07233 233 GVEVDGE----EEDFDAVISTAPPPILARLV--PDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNINDPG- 301 (434)
T ss_pred EEEeCCc----eEECCEEEECCCHHHHHhhc--CCCcHHHHhhhcccCccceEEEEEEecCCCCC----CceeeecCCC-
Confidence 4444443 79999999999999999986 55444456678889999999999999986421 2322222221
Q ss_pred CCCCceEEEEeccCCCCCCCCCCcEEE--EEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhC-CC-CCCceEEeeccCCC
Q 013082 305 QNGLKTLGTLFSSMMFPDRVPKDLYLY--TTFVGGSRNKELAKASTDELKQIVTSDLRQLLG-VE-GDPAFVNHFFWSKA 380 (450)
Q Consensus 305 ~~~~~~~~~~~~s~~~~~~~p~g~~~l--~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~-~~-~~p~~~~v~~w~~a 380 (450)
.++.++++.++..|...|++++++ .+++.+. ..+..++++++++.++++|.++++ +. ..+++..+.+|+++
T Consensus 302 ---~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a 376 (434)
T PRK07233 302 ---APFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD--HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYA 376 (434)
T ss_pred ---CCcceEEEecccCCccccCCceEEEEeeecCCC--ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccc
Confidence 245566666665665555565543 4454432 234467899999999999999986 43 35778889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc---CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 381 FPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR---GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 381 ~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~---~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+|.+.+|+....+. +.++.+|||||||++ .+.++++|+.||.+||++|++.+.
T Consensus 377 ~~~~~~g~~~~~~~---~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 377 QPIYEPGYLDKIPP---YDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cccccCchhhcCCC---cccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 99999997654332 335678999999963 234799999999999999988764
No 9
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.3e-35 Score=295.61 Aligned_cols=372 Identities=18% Similarity=0.219 Sum_probs=249.8
Q ss_pred CeeccCCCCCeeEEEEecCcE--EEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEE--e---ecCC-
Q 013082 1 MVFEADERAGGKLRSISKDGL--IWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVP--F---LIPT- 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~--~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~--~---~~p~- 72 (450)
+||||++|+|||++|++.+|+ ++|.|+|+++..++++.+|+++||+......+ .....+...+|+. + ++|.
T Consensus 14 ~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 92 (419)
T TIGR03467 14 TLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGP-RLPLPFYDPGGRLSRLRLSRLPAP 92 (419)
T ss_pred EEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcc-cCCcceecCCCCceeecCCCCCCC
Confidence 589999999999999998865 49999999998889999999999998765432 2112222223332 1 1222
Q ss_pred -Ch-hHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhh-cHHHHHHHhhhhhcccccCCcccchh
Q 013082 73 -NP-IALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHF-GREVVDFLIDPFVAGTSAGDPESLVM 149 (450)
Q Consensus 73 -~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~l~~p~~~~~~~~~~~~~Sa 149 (450)
.. ..++..+.+++.++.++............ ...+++|+++|+++++ ++++.+.|+.|++.++|+.+++++|+
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~ 168 (419)
T TIGR03467 93 LHLARGLLRAPGLSWADKLALARALLALRRTRF----RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASA 168 (419)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc----cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 21 22344467787778776554322111100 2457899999999864 88999999999999999999999999
Q ss_pred hccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHh-ccc----------cC--
Q 013082 150 RHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLS-YSH----------DG-- 216 (450)
Q Consensus 150 ~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~-l~~----------~~-- 216 (450)
.+++..+.. +.... .....+++++||++++... ++. .+
T Consensus 169 ~~~~~~~~~----------~~~~~-------------------~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~ 219 (419)
T TIGR03467 169 ALAAKVLRD----------SFLAG-------------------RAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTR 219 (419)
T ss_pred HHHHHHHHH----------HHhcC-------------------CCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCe
Confidence 876554321 01000 0122356889999876533 321 11
Q ss_pred ----CccCCCeEEEec-CCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCC
Q 013082 217 ----RSALENWSLCSS-NQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRP 291 (450)
Q Consensus 217 ----~~~~~~~~v~~~-~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~ 291 (450)
...++++.+.+. +|+ ++.||+||+|+|++++.+|+ +. ++..+.+.+++|.++.+|++.|++++|. +
T Consensus 220 V~~i~~~~~~~~~~~~~~g~----~~~~d~vi~a~p~~~~~~ll--~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~ 290 (419)
T TIGR03467 220 VRSIEANAGGIRALVLSGGE----TLPADAVVLAVPPRHAASLL--PG--EDLGALLTALGYSPITTVHLRLDRAVRL-P 290 (419)
T ss_pred eeEEEEcCCcceEEEecCCc----cccCCEEEEcCCHHHHHHhC--CC--chHHHHHhhcCCcceEEEEEEeCCCcCC-C
Confidence 112445555433 443 78999999999999999996 43 2455678889999999999999998753 2
Q ss_pred CCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC--CCC
Q 013082 292 LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE--GDP 369 (450)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p 369 (450)
..+++.. .. ....+++... . ++...++.+++++ +.++.+++++++++.++++|.+++|.. ..|
T Consensus 291 ~~~~~~~-~~--------~~~~~~~~~~---~-~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~ 355 (419)
T TIGR03467 291 APMVGLV-GG--------LAQWLFDRGQ---L-AGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKP 355 (419)
T ss_pred CCeeeec-CC--------ceeEEEECCc---C-CCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCc
Confidence 2333332 11 1223343221 1 1122355555543 345667899999999999999999754 356
Q ss_pred ceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCC---CChHHHHHHHHHHHHHHHH
Q 013082 370 AFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGG---LSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 370 ~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~~ 433 (450)
++..+.+|.++.+.+.+|+....+ .+.++.++||||||++.+ ..+|||+.||.+||++|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 356 LWARVIKEKRATFAATPGLNRLRP---GARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cceEEEEccCCccccCCcccccCC---CCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 788888898877777777642111 123566899999999754 2589999999999999863
No 10
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=7e-34 Score=285.89 Aligned_cols=364 Identities=16% Similarity=0.157 Sum_probs=239.8
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccC--hHHHHHHHHHcCCCccccccCCCCceEEE---------ECCEEee
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES--EMEVKGLLDDLGIREKQQFPISQYKRYVV---------RNGVPFL 69 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~--~~~~~~l~~~lGl~~~~~~~~~~~~~~~~---------~~G~~~~ 69 (450)
+||||++|+|||++|.+.+|+.+|+|++|++.. ++++.+|++++|++.. . ......+++ .++....
T Consensus 27 ~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (435)
T PLN02268 27 TLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLY--R-TSGDNSVLYDHDLESYALFDMDGNQ 103 (435)
T ss_pred EEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceE--e-ccCCccccccccccccceecCCCCC
Confidence 589999999999999988899999999999853 4568999999999632 1 111112222 2222223
Q ss_pred cCCChhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHh-----------hcHHHHHHHhhhhhcc
Q 013082 70 IPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-----------FGREVVDFLIDPFVAG 138 (450)
Q Consensus 70 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-----------~~~~~~~~l~~p~~~~ 138 (450)
+|......+.. ...++..+...... ...+++|+.+|+.+. +++++.+.++.| +.+
T Consensus 104 ~~~~~~~~~~~------~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 169 (435)
T PLN02268 104 VPQELVTKVGE------TFERILEETEKVRD-------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEG 169 (435)
T ss_pred CCHHHHHHHHH------HHHHHHHHHHHHHh-------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHH
Confidence 33222111110 00112222111010 135789999987543 355566666677 456
Q ss_pred cccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc---
Q 013082 139 TSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--- 215 (450)
Q Consensus 139 ~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--- 215 (450)
+|+.+++++|+..+.. + .+ + ......+.+|+++++++++..
T Consensus 170 ~~~~~~~~ls~~~~~~-----~----~~---------------------~------~g~~~~~~~G~~~l~~~l~~~~~i 213 (435)
T PLN02268 170 WFAADADTISLKSWDQ-----E----EL---------------------L------EGGHGLMVRGYDPVINTLAKGLDI 213 (435)
T ss_pred HhCCChHhCchhhcCC-----c----cc---------------------c------CCCceeecCCHHHHHHHHhccCce
Confidence 7899999999764211 0 00 0 011236889999999887531
Q ss_pred --C------CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhh-hhccCCCCC-cCCCCCCCCCCCeEEEEEEecC
Q 013082 216 --G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEM-KITKGGNLF-PLDFLPEVIYMPLSVIITTFKK 285 (450)
Q Consensus 216 --~------~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~l-l~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~ 285 (450)
+ ...+++|.|++.+|+ ++.||+||+|+|+++++.+ +.+.|..|+ ..+.+++++|.++.+|.+.|++
T Consensus 214 ~~~~~V~~i~~~~~~v~v~~~~g~----~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~ 289 (435)
T PLN02268 214 RLNHRVTKIVRRYNGVKVTVEDGT----TFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDS 289 (435)
T ss_pred eCCCeeEEEEEcCCcEEEEECCCc----EEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCC
Confidence 1 124567889888774 7899999999999999864 223343443 4567889999999999999999
Q ss_pred CCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC
Q 013082 286 ENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV 365 (450)
Q Consensus 286 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~ 365 (450)
++|+. ...+|.+.+... .. ..+.+. . .+.+..+|++++++..+..+.+++++++++.++++|.++++.
T Consensus 290 ~fw~~-~~~~g~~~~~~~-----~~--~~~~~~-~---~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 290 VFWPN-VEFLGVVAPTSY-----GC--SYFLNL-H---KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred CCCCC-CceeeccCCCCC-----Cc--eEEEec-c---cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC
Confidence 98863 344555544322 11 112221 1 123456788888877777777899999999999999999976
Q ss_pred CCCCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCC---CChHHHHHHHHHHHHHHHHHh
Q 013082 366 EGDPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGG---LSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 366 ~~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~~~~ 435 (450)
..+|..+.+++|. +++..+.+|.... ..+.+.++..+|||||+++.. ..||||+.||.+||++|++.|
T Consensus 358 ~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~--~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 358 ATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHD--LYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCccEEEecccCCCCCCCccCCCCCCCCCHH--HHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 5678899999995 3344445664321 122345677799999999732 249999999999999998764
No 11
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.98 E-value=1.6e-31 Score=269.57 Aligned_cols=387 Identities=16% Similarity=0.142 Sum_probs=251.3
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEee--------cC
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFL--------IP 71 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~--------~p 71 (450)
+|||+++++||+++|+. .+|+.+|.|+|+|+..++++.++++++|+.+.+.... ....|...+|++.. .|
T Consensus 26 ~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P 104 (474)
T TIGR02732 26 DIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE-HTHTFVNKGGDIGELDFRFATGAP 104 (474)
T ss_pred EEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc-ceeEEEcCCCcccccccCCCCCCc
Confidence 58999999999999984 6899999999999988999999999999987765432 22233333455321 23
Q ss_pred C-ChhHhhhcccCChhHHHHHhccccccccC----Ccc---cccCCCcCCcHHHHHHHhhcHH-HHHHHhhhhhcccccC
Q 013082 72 T-NPIALLTSNFLSAQSKFQIILEPFLWKKS----DSA---KVSAEDAKESVGGFFQRHFGRE-VVDFLIDPFVAGTSAG 142 (450)
Q Consensus 72 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~s~~~~l~~~~~~~-~~~~l~~p~~~~~~~~ 142 (450)
. .+..+++++.+++.+|++++.+.+..... +.. +.....+++|+.+|++++.+++ ++++|++|++.++++.
T Consensus 105 ~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~ 184 (474)
T TIGR02732 105 FNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFI 184 (474)
T ss_pred hhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 1 23466777889999999876654221100 000 0012357899999999988775 7999999999999999
Q ss_pred CcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHH-----HHHhccccC-
Q 013082 143 DPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV-----LSLSYSHDG- 216 (450)
Q Consensus 143 ~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-----l~~~l~~~~- 216 (450)
+++++|+.++++.+..+.. . .....+.+++||++. +++.+...+
T Consensus 185 ~~~~~Sa~~~~~~~~~~~~-~-----------------------------~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg 234 (474)
T TIGR02732 185 DCENISARCMLTIFMLFAA-K-----------------------------TEASKLRMLKGSPDKYLTKPILEYIEARGG 234 (474)
T ss_pred CHHHHHHHHHHHHHHHHHh-C-----------------------------CCcceeeeecCCcchhHHHHHHHHHHHCCC
Confidence 9999999998775432110 0 011233466777655 334443211
Q ss_pred -----C------ccC--CCe----EEEecCCCccccceecCEEEEcCChhhhhhhhhccCCC--CCcCCCCCCCCCCCeE
Q 013082 217 -----R------SAL--ENW----SLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGN--LFPLDFLPEVIYMPLS 277 (450)
Q Consensus 217 -----~------~~~--~~~----~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~--p~~~~~l~~~~y~~~~ 277 (450)
. ..+ +++ .|++.+|. ..+.+.||+||+|+|++.+++|+ ++.. ....+.+..+.|.++.
T Consensus 235 ~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~-~~~~~~aD~VVlA~p~~~~~~Ll--~~~~~~~~~~~~l~~l~~~pi~ 311 (474)
T TIGR02732 235 KFHLRHKVREIKYEKSSDGSTRVTGLIMSKPE-GKKVIKADAYVAACDVPGIKRLL--PQEWRQFEEFDNIYKLDAVPVA 311 (474)
T ss_pred EEECCCEEEEEEEecCCCCceeEEEEEEecCC-cceEEECCEEEECCChHHHHhhC--ChhhhcCHHHhhHhcCCCCCeE
Confidence 1 111 222 22344332 11358899999999999999997 4432 2244667889999999
Q ss_pred EEEEEecCCCCC-CCCC---------Cee-EEecCCCCCCCCceEEEEeccC-CCC-CCCCCC-cEEEEEEeCCCCCCcC
Q 013082 278 VIITTFKKENVR-RPLE---------GFG-VLVPSKEQQNGLKTLGTLFSSM-MFP-DRVPKD-LYLYTTFVGGSRNKEL 343 (450)
Q Consensus 278 ~v~l~~~~~~~~-~~~~---------~~g-~~~~~~~~~~~~~~~~~~~~s~-~~~-~~~p~g-~~~l~~~~~~~~~~~~ 343 (450)
+|+|.|+++.-. .... +.. +++..+. ...+ .++-. ..+ +..+.+ .++|.+.+... ..+
T Consensus 312 ~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 383 (474)
T TIGR02732 312 TVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADA---DFSC---FADLALTSPDDYYKEGQGSLLQCVLTPG--DPW 383 (474)
T ss_pred EEEEEeccccccccchhhhhcccccccccccccccCc---ccee---eehhhccCHHHHhccCCCeEEEEEEeCh--hhh
Confidence 999999875311 1000 000 0000110 0011 11100 001 111222 34555555432 356
Q ss_pred CCCCHHHHHHHHHHHHHHHhCC-C-CCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCC---CChH
Q 013082 344 AKASTDELKQIVTSDLRQLLGV-E-GDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGG---LSVG 418 (450)
Q Consensus 344 ~~~~~eel~~~~~~~L~~~~~~-~-~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g---~~~~ 418 (450)
.++++++|+++++++|+++++. . .++.++.+.+.+.+.+.+.+|+...++ ...++.+|||+||||+.. .++|
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P---~~~t~~~~l~lAGD~t~~~~pas~e 460 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRP---DQKTPISNFFLAGSYTQQDYIDSME 460 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCC---CCCCCCCCeEEeccccccCchHHHh
Confidence 6789999999999999999963 2 356777888999998888899974432 234567899999999743 5799
Q ss_pred HHHHHHHHHHHHHH
Q 013082 419 KSIASGCKAAELVI 432 (450)
Q Consensus 419 ~ai~SG~~aA~~i~ 432 (450)
+|+.||..||+.|+
T Consensus 461 gAv~sG~~aA~~i~ 474 (474)
T TIGR02732 461 GATLSGRQAAAAIL 474 (474)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999773
No 12
>PLN02487 zeta-carotene desaturase
Probab=99.98 E-value=9.3e-31 Score=265.71 Aligned_cols=394 Identities=16% Similarity=0.118 Sum_probs=259.5
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEE------eecCCC
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVP------FLIPTN 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~------~~~p~~ 73 (450)
+|||+++++||+++|+. .+|+.+|.|+|+++..++++.+++++||+.+.+.++.. ...|+..+|+. +++|..
T Consensus 102 ~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~-~~~~~~~~g~~~~~~~~~p~~~p 180 (569)
T PLN02487 102 DIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVKDH-THTFVNKGGDVGELDFRFPVGAP 180 (569)
T ss_pred EEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccccccc-ceeEEecCCEEeeeccCCCCCch
Confidence 58999999999999996 67999999999999888999999999999887655332 23444446665 233332
Q ss_pred h---hHhhhcccCChhHHHHHhcccccccc----CCc---ccccCCCcCCcHHHHHHHhhcHH-HHHHHhhhhhcccccC
Q 013082 74 P---IALLTSNFLSAQSKFQIILEPFLWKK----SDS---AKVSAEDAKESVGGFFQRHFGRE-VVDFLIDPFVAGTSAG 142 (450)
Q Consensus 74 ~---~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~s~~~~l~~~~~~~-~~~~l~~p~~~~~~~~ 142 (450)
+ ..+++++.+++.+|+++..+.+..+. .+. .+..+..+++|+.+|++++.+++ ++++|++|++.++++.
T Consensus 181 l~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~ 260 (569)
T PLN02487 181 LHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFI 260 (569)
T ss_pred hhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 2 25667788998899987655422110 000 01112467899999999998864 9999999999999999
Q ss_pred CcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHH-HHHhccc----cC-
Q 013082 143 DPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV-LSLSYSH----DG- 216 (450)
Q Consensus 143 ~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~----~~- 216 (450)
+++++|+.+++..+.... .. .....+.+++||+++ |.+.+.. .+
T Consensus 261 ~~d~~SA~~~~~vl~~~~----------~~--------------------~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 261 DCDNISARCMLTIFSLFA----------TK--------------------TEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred CHHHHHHHHHHHHHHHHh----------hc--------------------CCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 999999998766552100 00 011234688999996 7655431 11
Q ss_pred -----C------cc--CCC----eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCC--cCCCCCCCCCCCeE
Q 013082 217 -----R------SA--LEN----WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF--PLDFLPEVIYMPLS 277 (450)
Q Consensus 217 -----~------~~--~~~----~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~--~~~~l~~~~y~~~~ 277 (450)
. .. +++ +.|+++++. ..+.+.||+||+|+|++.+.+|+ ++..++ ..+.+..+.+.+|+
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~-~~~~~~aD~VV~A~p~~~~~~Ll--p~~~~~~~~~~~l~~L~~~pi~ 387 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKAT-EKEIVKADAYVAACDVPGIKRLL--PEQWREYEFFDNIYKLVGVPVV 387 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCC-CceEEECCEEEECCCHHHHHHhC--CchhhccHHHhHHhcCCCeeEE
Confidence 0 01 122 234442111 12358899999999999999997 544332 24567788889999
Q ss_pred EEEEEecCCCCC-CC---------CCCeeE--EecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCC
Q 013082 278 VIITTFKKENVR-RP---------LEGFGV--LVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAK 345 (450)
Q Consensus 278 ~v~l~~~~~~~~-~~---------~~~~g~--~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~ 345 (450)
.|+|.|+++.-. .+ ..++.. ++.+.+ ..+.+.+.-...-....+.+...|.+++++ +..+..
T Consensus 388 tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~----~~f~~di~l~~~~~~~~~~~g~~l~~vis~--a~~~~~ 461 (569)
T PLN02487 388 TVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADAD----FSCFADLALTSPEDYYKEGEGSLIQAVLTP--GDPYMP 461 (569)
T ss_pred EEEEEecccccccccccccccccccccccccccccCCC----cceEeeeecCCHHHHcccCCceEEEEEEcC--CccccC
Confidence 999999976321 10 001111 111111 122222210110000011222466666653 345678
Q ss_pred CCHHHHHHHHHHHHHHHhCCC--CCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc---CCCChHHH
Q 013082 346 ASTDELKQIVTSDLRQLLGVE--GDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR---GGLSVGKS 420 (450)
Q Consensus 346 ~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~---~g~~~~~a 420 (450)
++++||++++.++|.++++.. .++.+..+.+.+.+...+.+|....++ ...++++|||+||||+ ...++|+|
T Consensus 462 ~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP---~~~T~~~nl~LAGD~t~~~yPat~EgA 538 (569)
T PLN02487 462 LSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRP---DQKTPISNFFLAGSYTKQDYIDSMEGA 538 (569)
T ss_pred CCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCC---CCCCCCCCEEEeCcccccCCcchHHHH
Confidence 999999999999999998643 356788888998888777777653322 2356788999999996 22479999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 013082 421 IASGCKAAELVISYLEK 437 (450)
Q Consensus 421 i~SG~~aA~~i~~~~~~ 437 (450)
++||..||+.|++....
T Consensus 539 v~SG~~AA~~i~~~~~~ 555 (569)
T PLN02487 539 TLSGRQAAAYICEAGEE 555 (569)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999876543
No 13
>PLN02568 polyamine oxidase
Probab=99.98 E-value=4.5e-31 Score=268.13 Aligned_cols=405 Identities=15% Similarity=0.154 Sum_probs=254.6
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccC-hHHHHHHHHHcCCCcccccc---C--CCCceEEEECCEEeecCCCh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFP---I--SQYKRYVVRNGVPFLIPTNP 74 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~---~--~~~~~~~~~~G~~~~~p~~~ 74 (450)
+|||+++|+|||++|.+..|+.+|.|++++++. ++.+.+|++++|+....... . .....++..+|..+ +...
T Consensus 37 ~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ 114 (539)
T PLN02568 37 TVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DPSI 114 (539)
T ss_pred EEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcCC--CHHH
Confidence 589999999999999999999999999999953 57899999999996532210 0 01122333355422 2111
Q ss_pred hHhhhcccCChhHHHHHhccccc------------cccCC--cccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccc
Q 013082 75 IALLTSNFLSAQSKFQIILEPFL------------WKKSD--SAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTS 140 (450)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~ 140 (450)
..-+.. .+ ..++.+... ..... ..+......+.|+.+||++++++ .++.+..|+..+++
T Consensus 115 ~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~-~~~~~~~p~~~~~~ 187 (539)
T PLN02568 115 VESIST-LF-----RGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLDA-YWDSVSADEQIKGY 187 (539)
T ss_pred HHHHHH-HH-----HHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHHHH-HHhhcccchhhccc
Confidence 110000 00 000100000 00000 00000012356999999999987 77788899999999
Q ss_pred cCCcccchhhccchhHHHHHHhcCChHH-HHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc----
Q 013082 141 AGDPESLVMRHSFPELWNLEKRYGSVIA-GAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD---- 215 (450)
Q Consensus 141 ~~~~~~~Sa~~~~~~l~~~~~~~gsl~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---- 215 (450)
+.++++++...+++.+..++..++++.. +....... +. + .......+++.||+++|+++|+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~---------~~--~-~~~~g~~~~i~gG~~~Li~~La~~L~~~ 255 (539)
T PLN02568 188 GGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAE---------SE--Y-RMFPGEEITIAKGYLSVIEALASVLPPG 255 (539)
T ss_pred cchhHHHHHHHHHHHHHHhhccccccccHhhcccccc---------Cc--c-eecCCCeEEECCcHHHHHHHHHhhCCCC
Confidence 9999999998888888877766555422 22211000 00 0 001123568999999999887521
Q ss_pred ----C------CccCCCeEEEecCCCccccceecCEEEEcCChhhhhh------hhhccCCCCC-cCCCCCCCCCCCeEE
Q 013082 216 ----G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE------MKITKGGNLF-PLDFLPEVIYMPLSV 278 (450)
Q Consensus 216 ----~------~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~------ll~~~~~~p~-~~~~l~~~~y~~~~~ 278 (450)
+ ...+++|+|++.+|. ++.||+||+|+|++++++ +. |.|..|+ ..++++++.|+.+.|
T Consensus 256 ~I~ln~~V~~I~~~~~~v~V~~~dG~----~~~aD~VIvTvPl~vL~~~~~~~~i~-F~P~LP~~k~~Ai~~l~~g~~~K 330 (539)
T PLN02568 256 TIQLGRKVTRIEWQDEPVKLHFADGS----TMTADHVIVTVSLGVLKAGIGEDSGL-FSPPLPDFKTDAISRLGFGVVNK 330 (539)
T ss_pred EEEeCCeEEEEEEeCCeEEEEEcCCC----EEEcCEEEEcCCHHHHhhccccccce-ecCCCCHHHHHHHHhcCCceeeE
Confidence 1 123466889988874 789999999999999996 33 4555554 467899999999999
Q ss_pred EEEEecCCCCCCC-----CCCeeEEecCCCCCCCCceEEEEeccC---CCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHH
Q 013082 279 IITTFKKENVRRP-----LEGFGVLVPSKEQQNGLKTLGTLFSSM---MFPDRVPKDLYLYTTFVGGSRNKELAKASTDE 350 (450)
Q Consensus 279 v~l~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~s~---~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~ee 350 (450)
|++.|++++|+.. ...+++++...+. +........|... ..+ ...+..+|.+++.|..+..+..+++++
T Consensus 331 i~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~vL~~~~~G~~A~~~e~l~~~~ 407 (539)
T PLN02568 331 LFVELSPRPDGSPEDVAKFPFLQMAFHRSDS-EARHDKIPWWMRRTASICP--IHKNSSVLLSWFAGKEALELEKLSDEE 407 (539)
T ss_pred EEEEecCCCCCcccccccccceeeeecccch-hhhcccccchhhccccccc--cCCCCCEEEEEeccHHHHHHHcCCHHH
Confidence 9999999987531 1222233221110 0000000001100 011 112345888888887677778899999
Q ss_pred HHHHHHHHHHHHhCCC-----------------------CCCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhh
Q 013082 351 LKQIVTSDLRQLLGVE-----------------------GDPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETN 401 (450)
Q Consensus 351 l~~~~~~~L~~~~~~~-----------------------~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~ 401 (450)
+++.+++.|++++|.. ..|..+.+++|. ++|...++|.... ..+.+.+|
T Consensus 408 ~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~--~~~~La~P 485 (539)
T PLN02568 408 IIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGD--DLDRMAEP 485 (539)
T ss_pred HHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChh--HHHHHhCc
Confidence 9999999999999732 257889999993 3444444565421 11234444
Q ss_pred CC-------------CeEEecCCcC--CC-ChHHHHHHHHHHHHHHHHHhc
Q 013082 402 LP-------------GFFYAGNHRG--GL-SVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 402 ~~-------------~l~~aG~~~~--g~-~~~~ai~SG~~aA~~i~~~~~ 436 (450)
++ +|||||+++. .. .+|||+.||.+||++|++.++
T Consensus 486 ~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 486 LPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 43 6999999972 22 499999999999999998764
No 14
>PLN03000 amine oxidase
Probab=99.97 E-value=1.7e-30 Score=269.22 Aligned_cols=375 Identities=17% Similarity=0.167 Sum_probs=233.3
Q ss_pred CeeccCCCCCeeEEEEecC----cEEEccCCCccccCh-HHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChh
Q 013082 1 MVFEADERAGGKLRSISKD----GLIWDEGANTMTESE-MEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI 75 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~----g~~~D~G~~~~~~~~-~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~ 75 (450)
+|||+++|+|||++|.+.. |+.+|+|++|+++.+ +.+..|++++|+... .. .....+++.+|+.+ |....
T Consensus 211 ~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~--~~-~~~~~ly~~~Gk~v--~~~~~ 285 (881)
T PLN03000 211 TVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY--KV-RDKCPLYRVDGKPV--DPDVD 285 (881)
T ss_pred EEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee--ec-CCCCeEEEeCCcCC--chhhh
Confidence 5899999999999999864 578999999999654 567889999999732 22 22456667788754 22111
Q ss_pred H---hhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHH---HhhcHHHH---HHHhhhhhcccccCCccc
Q 013082 76 A---LLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQ---RHFGREVV---DFLIDPFVAGTSAGDPES 146 (450)
Q Consensus 76 ~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~---~~~~~~~~---~~l~~p~~~~~~~~~~~~ 146 (450)
. ...+.++....+++.+.+ ....+.|+.+++. ++++..+. ..++.+.+
T Consensus 286 ~~ve~~fn~lLd~~~~lr~l~~-------------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~l---------- 342 (881)
T PLN03000 286 LKVEVAFNQLLDKASKLRQLMG-------------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHL---------- 342 (881)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc-------------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHH----------
Confidence 1 111111111111111110 1234667766543 12221100 11122111
Q ss_pred chhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-----C-----
Q 013082 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G----- 216 (450)
Q Consensus 147 ~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~----- 216 (450)
..++...++.+..+.....+ .+.. .......+.++||+++|+++|+.. +
T Consensus 343 ----------anLE~~~as~ls~LSl~~wd--------qd~~---~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~ 401 (881)
T PLN03000 343 ----------ANLEYANAGLVSKLSLAFWD--------QDDP---YDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQT 401 (881)
T ss_pred ----------HHHhcccccCHHHHHHHHhh--------hccc---ccCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEE
Confidence 11111111111111100000 0000 001223457999999999998632 1
Q ss_pred -CccCCCeEEEecCCCccccceecCEEEEcCChhhhh--hhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCC
Q 013082 217 -RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVK--EMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPL 292 (450)
Q Consensus 217 -~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~--~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~ 292 (450)
...+++|.|+++++ ++.||+||+|+|+++++ .+. |.|..|+ ..++|++++|+.+.+|++.|++++|+.+.
T Consensus 402 I~~~~dgV~V~~~~~-----~~~AD~VIvTVPlgVLk~~~I~-F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~ 475 (881)
T PLN03000 402 IRYGSNGVKVIAGNQ-----VYEGDMVLCTVPLGVLKNGSIK-FVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL 475 (881)
T ss_pred EEECCCeEEEEECCc-----EEEeceEEEcCCHHHHhhCcee-eCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCC
Confidence 12356788876543 79999999999999999 454 3444554 56789999999999999999999997666
Q ss_pred CCeeEEecCCCCCCCCceEEEEeccCCCCCCCC-CCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC---C-C
Q 013082 293 EGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVP-KDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV---E-G 367 (450)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p-~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~---~-~ 367 (450)
..||.+.++.. .......|.+. .| .+..+|.+|+++..+..+..++++++++.++++|+++++. . +
T Consensus 476 ~~FG~l~~~~~----~rg~~~~f~s~-----sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp 546 (881)
T PLN03000 476 DTFGHLTEDPN----YRGEFFLFYSY-----APVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVP 546 (881)
T ss_pred CceeEEecCCC----CCceeEEEeCC-----CCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccC
Confidence 77888865432 11222334332 22 3456888999887777788899999999999999999963 2 4
Q ss_pred CCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhC--CCeEEecCCcC--C-CChHHHHHHHHHHHHHHHHHhc
Q 013082 368 DPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNL--PGFFYAGNHRG--G-LSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 368 ~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~--~~l~~aG~~~~--g-~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+|..+.+++|. ++|..+.+|.... .++.+.+++ ++|||||+++. . ..||||+.||.+||++|++.+.
T Consensus 547 ~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~--~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 547 DPLQTVCTRWGGDPFSLGSYSNVAVGASGD--DYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred CceEEEEccCCCCCCCCccccCCCCCCchH--HHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence 78899999994 4555556664321 122344554 37999999963 2 3489999999999999998875
Q ss_pred ccchh
Q 013082 437 KSSDD 441 (450)
Q Consensus 437 ~~~~~ 441 (450)
.-...
T Consensus 625 ~~~~~ 629 (881)
T PLN03000 625 ARGIR 629 (881)
T ss_pred hccCC
Confidence 54443
No 15
>PLN02612 phytoene desaturase
Probab=99.97 E-value=2.1e-30 Score=266.23 Aligned_cols=385 Identities=14% Similarity=0.149 Sum_probs=245.3
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEE--CCEEe--e----cC
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVR--NGVPF--L----IP 71 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~--~G~~~--~----~p 71 (450)
+|||+++++||++.|++ .+|+++|.|+|++.+.++++.+|+++||+.+.+.+... ...|.+. .++.. . +|
T Consensus 120 ~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~P 198 (567)
T PLN02612 120 ILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEH-SMIFAMPNKPGEFSRFDFPEVLP 198 (567)
T ss_pred EEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceeccc-ceEEEecCCCCceeeCcCchhcC
Confidence 58999999999999987 48999999999999888999999999999876554222 2222222 23221 2 33
Q ss_pred CC---hhHhhh-cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHh-hcHHHHHHHhhhhhcccccCCccc
Q 013082 72 TN---PIALLT-SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-FGREVVDFLIDPFVAGTSAGDPES 146 (450)
Q Consensus 72 ~~---~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-~~~~~~~~l~~p~~~~~~~~~~~~ 146 (450)
.. +.++++ +..+++.+|+++....+.. ...........+++|+.+|+++. +++.+.+.+++|++.++++.++++
T Consensus 199 ~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~-~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 277 (567)
T PLN02612 199 APLNGIWAILRNNEMLTWPEKIKFAIGLLPA-IVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDE 277 (567)
T ss_pred ChhhhhHHHHhcCccCCHHHHHHHHHhhhHH-hcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 32 344443 3566788888765432110 00000001246789999999884 567788899999999999999999
Q ss_pred chhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccch-HHHHHhcc----cc------
Q 013082 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM-QVLSLSYS----HD------ 215 (450)
Q Consensus 147 ~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~----~~------ 215 (450)
+|+.+++..+..+... .....+.++.|+. +.+.+.+. ..
T Consensus 278 ~S~~~~l~~l~~~l~~------------------------------~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l 327 (567)
T PLN02612 278 LSMQCILIALNRFLQE------------------------------KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRL 327 (567)
T ss_pred hhHHHHHHHHHHHHhc------------------------------cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEe
Confidence 9998877655432110 0111223455554 33433332 11
Q ss_pred C------CccCCC--eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCC-CC-CcCCCCCCCCCCCeEEEEEEecC
Q 013082 216 G------RSALEN--WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG-NL-FPLDFLPEVIYMPLSVIITTFKK 285 (450)
Q Consensus 216 ~------~~~~~~--~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~-~p-~~~~~l~~~~y~~~~~v~l~~~~ 285 (450)
+ ..++++ +.|++.+|+ .+.||+||+|+|++.++.|+ ++. .+ .+.+.++++.+.++++|++.|++
T Consensus 328 ~~~V~~I~~~~~g~v~~v~~~~G~----~~~ad~VI~a~p~~~l~~Ll--~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr 401 (567)
T PLN02612 328 NSRIKKIELNDDGTVKHFLLTNGS----VVEGDVYVSATPVDILKLLL--PDQWKEIPYFKKLDKLVGVPVINVHIWFDR 401 (567)
T ss_pred CCeeeEEEECCCCcEEEEEECCCc----EEECCEEEECCCHHHHHHhC--cchhcCcHHHHHHHhcCCCCeEEEEEEECc
Confidence 1 112334 235666664 78999999999999999986 432 22 34455667889999999999999
Q ss_pred CCCCCCCCCeeEEecCCCCCCCCceEEEEec-cCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhC
Q 013082 286 ENVRRPLEGFGVLVPSKEQQNGLKTLGTLFS-SMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLG 364 (450)
Q Consensus 286 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~ 364 (450)
++|. ... .+++.+ + ....++++ |...+...+++..++.+.++ .+.+|.+++++|+++.++++|+++|+
T Consensus 402 ~~~~-~~~--~~~~~~-~-----~~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~lfp 470 (567)
T PLN02612 402 KLKN-TYD--HLLFSR-S-----PLLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKLFP 470 (567)
T ss_pred ccCC-CCC--ceeecC-C-----CCceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHHCC
Confidence 8643 222 233322 2 12233332 22223334555566554443 34577788999999999999999997
Q ss_pred CC--C-----CCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC-C--CChHHHHHHHHHHHHHHHHH
Q 013082 365 VE--G-----DPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG-G--LSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 365 ~~--~-----~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~-g--~~~~~ai~SG~~aA~~i~~~ 434 (450)
.. . ++..+.+.+.+.++..+.+|...... ...++++||||||||+. + .++|||+.||++||+.|+++
T Consensus 471 ~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp---~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~ 547 (567)
T PLN02612 471 DEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRP---LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQD 547 (567)
T ss_pred cccccccCCceEEEEEEeccCCceEEeCCCCcccCc---cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHH
Confidence 43 1 12333444455544334444432111 12357789999999973 2 46999999999999999998
Q ss_pred hcc
Q 013082 435 LEK 437 (450)
Q Consensus 435 ~~~ 437 (450)
+..
T Consensus 548 ~~~ 550 (567)
T PLN02612 548 YEL 550 (567)
T ss_pred hcc
Confidence 855
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=4.7e-30 Score=259.38 Aligned_cols=380 Identities=16% Similarity=0.160 Sum_probs=239.7
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEE--CCEEe--ecC---C
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVR--NGVPF--LIP---T 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~--~G~~~--~~p---~ 72 (450)
+|||+++++|||++|++ .+|+.+|.|+|+++..++++.+++++||+.+.+.+... ...|... +++.. .+| .
T Consensus 26 ~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (453)
T TIGR02731 26 IVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKSH-SMIFNQPDKPGTFSRFDFPDIPA 104 (453)
T ss_pred EEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecCC-ceEEecCCCCcceeeccCCCCCC
Confidence 58999999999999985 58999999999999888999999999999876544221 1122111 22221 222 2
Q ss_pred Ch---hHhhhc-ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHH-hhcHHHHHHHhhhhhcccccCCcccc
Q 013082 73 NP---IALLTS-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR-HFGREVVDFLIDPFVAGTSAGDPESL 147 (450)
Q Consensus 73 ~~---~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~~~~~~~~l~~p~~~~~~~~~~~~~ 147 (450)
.+ ..++.. +.+++.+++++........ ....+.....+++|+.+|+++ .+++.+.+.++.|++.++|+.+|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~ 183 (453)
T TIGR02731 105 PFNGVAAILRNNDMLTWPEKIKFAIGLLPAI-VRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDEL 183 (453)
T ss_pred CHHHHHHHhcCcCCCCHHHHHHHHHHhHHHH-hcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 22 222322 3577788888765432100 000000124579999999987 57888899999999999999999999
Q ss_pred hhhccchhHHHHHH-hcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccc-----hHHHHHhcccc------
Q 013082 148 VMRHSFPELWNLEK-RYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGG-----MQVLSLSYSHD------ 215 (450)
Q Consensus 148 Sa~~~~~~l~~~~~-~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-----~~~l~~~l~~~------ 215 (450)
|+.++++.+..+.. ..++ ......|| ++.|...+...
T Consensus 184 S~~~~~~~l~~~~~~~~g~-------------------------------~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l 232 (453)
T TIGR02731 184 SMTVVLTALNRFLQERHGS-------------------------------KMAFLDGAPPERLCQPIVDYITSRGGEVRL 232 (453)
T ss_pred HHHHHHHHHHHHHhcCCCC-------------------------------eeEeecCCChHHHHHHHHHHHHhcCCEEeC
Confidence 99998766543211 0111 11123333 33343333211
Q ss_pred C------CccCCC-e-EEEecCCCcc-ccceecCEEEEcCChhhhhhhhhccCCC--CCcCCCCCCCCCCCeEEEEEEec
Q 013082 216 G------RSALEN-W-SLCSSNQEKQ-SLGLSFDAVIMTAPLCNVKEMKITKGGN--LFPLDFLPEVIYMPLSVIITTFK 284 (450)
Q Consensus 216 ~------~~~~~~-~-~v~~~~g~~~-~~~~~ad~VI~t~P~~~~~~ll~~~~~~--p~~~~~l~~~~y~~~~~v~l~~~ 284 (450)
+ ...+++ + .|++.+++++ ..++.||+||+|+|++.+.+|| +... +...+.+.+++|.++.+|++.|+
T Consensus 233 ~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 310 (453)
T TIGR02731 233 NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL--PQPWKQMPFFQKLNGLEGVPVINVHIWFD 310 (453)
T ss_pred CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC--chhhhcCHHHHHhhcCCCCcEEEEEEEEc
Confidence 1 112333 2 3555444211 1158899999999999999997 4322 23456677788999999999999
Q ss_pred CCCCCCCCCCeeEEecCCCCCCCCceEEEEec--cCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 013082 285 KENVRRPLEGFGVLVPSKEQQNGLKTLGTLFS--SMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQL 362 (450)
Q Consensus 285 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~ 362 (450)
++.+. .. ++++++.. .....++ +..++ ..++++.++.++++. +..+.++++||+++.++++|+++
T Consensus 311 ~~~~~--~~--~~~~~~~~------~~~~~~~~s~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~~~L~~~ 377 (453)
T TIGR02731 311 RKLTT--VD--HLLFSRSP------LLSVYADMSETCKE-YADPDKSMLELVFAP--AADWIGRSDEEIIDATMAELAKL 377 (453)
T ss_pred cccCC--CC--ceeeeCCC------cceeecchhhhChh-hcCCCCeEEEEEecC--hhhhhcCCHHHHHHHHHHHHHHh
Confidence 98642 22 34554332 1122222 22222 233345666655542 24567889999999999999999
Q ss_pred hCCC---CCC---ceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC---CCChHHHHHHHHHHHHHH
Q 013082 363 LGVE---GDP---AFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG---GLSVGKSIASGCKAAELV 431 (450)
Q Consensus 363 ~~~~---~~p---~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i 431 (450)
++.. ..+ +++.+.+.+++.+.+.+|.....+ .+.++++||||||+|+. ..+|||||.||.+||++|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~---~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 378 FPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRP---HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CCcccCCCCCceEEEEEEEECCCceeccCCCChhhCc---cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 9632 123 344444556665556677543322 34567889999999962 126999999999999986
No 17
>PLN02529 lysine-specific histone demethylase 1
Probab=99.97 E-value=2.2e-29 Score=260.49 Aligned_cols=374 Identities=16% Similarity=0.156 Sum_probs=229.2
Q ss_pred CeeccCCCCCeeEEEEecC--c--EEEccCCCccccCh-HHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCCh-
Q 013082 1 MVFEADERAGGKLRSISKD--G--LIWDEGANTMTESE-MEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNP- 74 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~--g--~~~D~G~~~~~~~~-~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~- 74 (450)
+|||+++|+|||++|.+.+ | +.+|+|++|++..+ +++..+++++|+..... .....++..+|..+....+.
T Consensus 187 ~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~---~~~~~~~~~~G~~v~~~~~~~ 263 (738)
T PLN02529 187 VVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKV---RDNCPLYKPDGALVDKEIDSN 263 (738)
T ss_pred EEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcccc---CCCceEEeCCCcCcchhhhhh
Confidence 5899999999999999864 3 48999999999653 45889999999864321 22344445577643221110
Q ss_pred -hHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhh------cHHHHHHHhhhhhcccccCCcccc
Q 013082 75 -IALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHF------GREVVDFLIDPFVAGTSAGDPESL 147 (450)
Q Consensus 75 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~~~~l~~p~~~~~~~~~~~~~ 147 (450)
...+ +.++ +++.-+... .+ ...++.|+.+|+.+.. -+...+.++...+..+....+.++
T Consensus 264 ~~~~~-~~~l---~~~~~l~~~-----~~-----~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~ 329 (738)
T PLN02529 264 IEFIF-NKLL---DKVTELRQI-----MG-----GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCL 329 (738)
T ss_pred HHHHH-HHHH---HHHHHHHHh-----cc-----cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCCh
Confidence 0000 0010 111101000 00 1356889999997532 111223344443332333333333
Q ss_pred hhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-----CC-----
Q 013082 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----GR----- 217 (450)
Q Consensus 148 Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~~----- 217 (450)
|..++. .|. ...+ .......+.+.||+++|+++|+.. +.
T Consensus 330 s~LSl~--~~~--~~~~---------------------------~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I 378 (738)
T PLN02529 330 SDLSAA--YWD--QDDP---------------------------YEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTI 378 (738)
T ss_pred HHhhhh--Hhh--hccc---------------------------cccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEE
Confidence 321111 010 0000 001223457999999999998631 11
Q ss_pred -ccCCCeEEEecCCCccccceecCEEEEcCChhhhhhh-hhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCC
Q 013082 218 -SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEM-KITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (450)
Q Consensus 218 -~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~l-l~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~ 294 (450)
..+++|+|+++++ ++.||+||+|+|++++++. +.|.|..|+ +.+++++++|.++.+|++.|++++|+...+.
T Consensus 379 ~~~~dGVtV~t~~~-----~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~ 453 (738)
T PLN02529 379 KYGNDGVEVIAGSQ-----VFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDT 453 (738)
T ss_pred EEcCCeEEEEECCE-----EEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCc
Confidence 2356788875432 7999999999999999953 113444443 5678999999999999999999998654556
Q ss_pred eeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC----CCCc
Q 013082 295 FGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE----GDPA 370 (450)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~----~~p~ 370 (450)
+|++.+...+ .. ....|.+.. .+.+..+|.+++++..+..+..++++++++.+++.|+++++.. ++|.
T Consensus 454 fG~l~~~~~~---~g-~~~~~~~~~----~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi 525 (738)
T PLN02529 454 FGCLNESSNK---RG-EFFLFYGYH----TVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPI 525 (738)
T ss_pred eEEEeccCCC---Cc-eEEEEecCC----CCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCce
Confidence 7777643321 11 112332221 1223357778888877777778899999999999999999742 3678
Q ss_pred eEEeeccCC------CCCCCCCCHHHHHHHHHHHHhh-CCCeEEecCCcCC---CChHHHHHHHHHHHHHHHHHhcc
Q 013082 371 FVNHFFWSK------AFPLYGRDYDSVLEAIEKMETN-LPGFFYAGNHRGG---LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 371 ~~~v~~w~~------a~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.+.+++|.. +|..+.+|.... .+..+.++ .++|||||+++.. ..+|||+.||.+||++|++.+.+
T Consensus 526 ~~v~t~W~~DP~s~GsYS~~~~g~~~~--d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 526 QTICTRWGSDPLSYGSYSHVRVQSSGS--DYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred EEEEccCCcCCCCCCCcccCCCCCchh--HHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 899999952 233333332211 12233344 3589999999632 24899999999999999988755
No 18
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.97 E-value=3.8e-29 Score=259.66 Aligned_cols=384 Identities=17% Similarity=0.187 Sum_probs=236.4
Q ss_pred CeeccCCCCCeeEEEEecCcE----EEccCCCccccC-hHHHHHHHHHcCCCccccccCCCCceEEEECCEEee--cCCC
Q 013082 1 MVFEADERAGGKLRSISKDGL----IWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFL--IPTN 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~----~~D~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~--~p~~ 73 (450)
+|||+++|+|||++|.+..|+ .+|+|++++++. ++.+..+++++|+..... .....+++.+|+.+. ++..
T Consensus 265 ~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~---~~~~~~~~~dG~~~~~~~~~~ 341 (808)
T PLN02328 265 VVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKV---RDICPLYLPDGKAVDAEIDSK 341 (808)
T ss_pred EEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceEec---CCCceEEeCCCcCcchhhhhh
Confidence 589999999999999987653 689999999854 356789999999975322 223456666777542 2222
Q ss_pred hhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccc
Q 013082 74 PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSF 153 (450)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~ 153 (450)
+. .+.+.++....+++...... ....|.|+.++++++ .+.. + +..++.+.+...
T Consensus 342 v~-~~f~~lL~~~~klr~~~~~~-----------~~~~D~SLg~~le~~--~~~~---------~-~~~~~~e~~Ll~-- 395 (808)
T PLN02328 342 IE-ASFNKLLDRVCKLRQAMIEE-----------VKSVDVNLGTALEAF--RHVY---------K-VAEDPQERMLLN-- 395 (808)
T ss_pred HH-HHHHHHHHHHHHHHHhhhhc-----------ccccCcCHHHHHHHH--hhhh---------c-cCCCHHHHHHHH--
Confidence 22 11112222222222111100 123568999999653 1110 0 122333332211
Q ss_pred hhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-----C------CccCCC
Q 013082 154 PELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G------RSALEN 222 (450)
Q Consensus 154 ~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~------~~~~~~ 222 (450)
+.+..++...++.+..+-...... .+. .......+.++||+++|+++|+.. + ...+++
T Consensus 396 w~lanlE~~~gs~ls~LSl~~w~q-------d~~----~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dg 464 (808)
T PLN02328 396 WHLANLEYANASLMSNLSMAYWDQ-------DDP----YEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDG 464 (808)
T ss_pred HHHHHHhccchhhHHHHHhhhhhc-------ccc----ccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCe
Confidence 112222222222222221000000 000 001223468999999999998631 1 123456
Q ss_pred eEEEecCCCccccceecCEEEEcCChhhhhh--hhhccCCCC-CcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEe
Q 013082 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLV 299 (450)
Q Consensus 223 ~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~--ll~~~~~~p-~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~ 299 (450)
|.|+ .+|+ ++.||+||+|+|++++++ +. |.|..| .+.++|+++.|.++.||++.|++++|....+.+|++.
T Consensus 465 V~V~-~~G~----~~~AD~VIvTvPl~vLk~~~I~-F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~ 538 (808)
T PLN02328 465 VIVY-AGGQ----EFHGDMVLCTVPLGVLKKGSIE-FYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLT 538 (808)
T ss_pred EEEE-eCCe----EEEcCEEEECCCHHHHhhcccc-cCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEe
Confidence 7774 4553 799999999999999995 33 344444 4567899999999999999999999876566788776
Q ss_pred cCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC----CCCceEEee
Q 013082 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE----GDPAFVNHF 375 (450)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~----~~p~~~~v~ 375 (450)
++.. ..-....|.+. . .+.+..+|++++++..+..+.+++++++++.+++.|+++++.. ++|..+.++
T Consensus 539 ~d~s----~rG~~~lf~s~--s--~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vt 610 (808)
T PLN02328 539 EDPS----MRGEFFLFYSY--S--SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCT 610 (808)
T ss_pred ecCC----CCceEEEEecC--C--CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEe
Confidence 4322 11111223331 1 1234568888998887777888999999999999999999732 478899999
Q ss_pred ccC------CCCCCCCCCHHHHHHHHHHHHhhC--CCeEEecCCcCC---CChHHHHHHHHHHHHHHHHHhcccch
Q 013082 376 FWS------KAFPLYGRDYDSVLEAIEKMETNL--PGFFYAGNHRGG---LSVGKSIASGCKAAELVISYLEKSSD 440 (450)
Q Consensus 376 ~w~------~a~p~~~~g~~~~~~~~~~~~~~~--~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~~~~~~~~~ 440 (450)
+|. ++|..+.+|.... .+..+.++. ++|||||+++.. ..||||+.||.+||++|++.++....
T Consensus 611 rW~~DP~s~GSYS~~~pG~~~~--~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~ 684 (808)
T PLN02328 611 RWGKDCFTYGSYSYVAVGSSGD--DYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684 (808)
T ss_pred cCCCCCCcCCCCCCCCCCCchh--HHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence 995 3444455665321 112234453 479999999732 24999999999999999998766543
No 19
>PLN02676 polyamine oxidase
Probab=99.96 E-value=4.8e-28 Score=244.38 Aligned_cols=377 Identities=12% Similarity=0.123 Sum_probs=230.2
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc----ChHHHHHHHHHcCCCccccccCCCCceEEEE-CCEEeecCCChh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE----SEMEVKGLLDDLGIREKQQFPISQYKRYVVR-NGVPFLIPTNPI 75 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~----~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~-~G~~~~~p~~~~ 75 (450)
+|||+++|+|||+.+.+..|+.+|+|+++++. ..+.+.++++++|+....... ......++. +|+.+ |....
T Consensus 54 ~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~-~~~~~~~~~~~g~~~--~~~~~ 130 (487)
T PLN02676 54 LILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFYSDF-DNLSSNIYKQDGGLY--PKKVV 130 (487)
T ss_pred EEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCceeecCc-cccceeEECCCCCCC--CHHHH
Confidence 48999999999999999999999999999963 346789999999997532211 111222333 66644 21111
Q ss_pred HhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcH--HHHHHHhhc--H-HHHHHHhhhhhcccccCCcccchhh
Q 013082 76 ALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESV--GGFFQRHFG--R-EVVDFLIDPFVAGTSAGDPESLVMR 150 (450)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~~--~-~~~~~l~~p~~~~~~~~~~~~~Sa~ 150 (450)
..+. ..+ ..+.-..+.+..... +...++.|+ .+++.+... . +....++.. ...++.+++++|+.
T Consensus 131 ~~~~-~~~---~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~ 199 (487)
T PLN02676 131 QKSM-KVA---DASDEFGENLSISLS-----AKKAVDISILTAQRLFGQVPKTPLEMVIDYYNY--DYEFAEPPRVTSLK 199 (487)
T ss_pred HHHH-HHH---HHHHHHHHHHHHhhc-----ccCCCCccHHHHHHHHhhCCCCHHHHHHHHHhc--cceeccCccccchh
Confidence 1000 000 011000000100000 023457777 445554431 1 122222221 12368888888876
Q ss_pred ccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEe--ccchHHHHHhcccc-------------
Q 013082 151 HSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSF--LGGMQVLSLSYSHD------------- 215 (450)
Q Consensus 151 ~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gG~~~l~~~l~~~------------- 215 (450)
.++.. +.. . ..+...+.+ +||+++|+++|+..
T Consensus 200 ~~~~~--------~~~-~------------------------~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~ 246 (487)
T PLN02676 200 NTEPN--------PTF-V------------------------DFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPR 246 (487)
T ss_pred hcCcc--------ccc-c------------------------cCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCc
Confidence 54320 000 0 001112334 68999998877531
Q ss_pred ---CC------ccCCCeEEEecCCCccccceecCEEEEcCChhhhhh--hhhccCCCCC-cCCCCCCCCCCCeEEEEEEe
Q 013082 216 ---GR------SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNLF-PLDFLPEVIYMPLSVIITTF 283 (450)
Q Consensus 216 ---~~------~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~--ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~ 283 (450)
+. ..+++|+|++++|+ ++.||+||+|+|+.+++. +. |.|..|+ ..+++++++|+.+.||.+.|
T Consensus 247 I~l~~~V~~I~~~~~gV~V~~~~G~----~~~a~~VIvtvPl~vLk~~~I~-F~P~LP~~k~~ai~~l~~g~~~Kv~l~f 321 (487)
T PLN02676 247 LKLNKVVREISYSKNGVTVKTEDGS----VYRAKYVIVSVSLGVLQSDLIK-FKPPLPDWKIEAIYQFDMAVYTKIFLKF 321 (487)
T ss_pred eecCCEeeEEEEcCCcEEEEECCCC----EEEeCEEEEccChHHhccCceE-EeCCCCHHHHHHHHhCCceeeEEEEEEe
Confidence 11 12467889998884 799999999999999997 54 5555555 45678899999999999999
Q ss_pred cCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHh
Q 013082 284 KKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~ 363 (450)
++++|+.........+...+ ... ..+|.+ +.. .+++..+|.+++.+..+..+..+++++..+.+++.|++++
T Consensus 322 ~~~FW~~~~~~~~~~~~~~~----~~~-~~~~~~--~~~-~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~ 393 (487)
T PLN02676 322 PYKFWPSGPGTEFFLYAHER----RGY-YPFWQH--LEN-EYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMF 393 (487)
T ss_pred CCCCCCCCCCceeeeeeccc----ccc-chhhhh--ccc-CCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99998642222222222211 000 011111 111 1223346666666655556667899999999999999999
Q ss_pred CCC-CCCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHH
Q 013082 364 GVE-GDPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG---GLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 364 ~~~-~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~ 433 (450)
|.. ..|..+..++|. ++|..+.+|..... .+.+.+|..+|||||+++. ...+|||+.||.+||++|++
T Consensus 394 g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~--~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~ 471 (487)
T PLN02676 394 GPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYE--FDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE 471 (487)
T ss_pred CCCCCCcceEEecccCCCCCCCcccCCCCCCCChhH--HHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHH
Confidence 754 468889999994 45555666754321 1234567789999999963 22489999999999999999
Q ss_pred Hhcccc
Q 013082 434 YLEKSS 439 (450)
Q Consensus 434 ~~~~~~ 439 (450)
.++..-
T Consensus 472 ~l~~~~ 477 (487)
T PLN02676 472 CIKKKK 477 (487)
T ss_pred HhccCc
Confidence 886644
No 20
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=234.07 Aligned_cols=376 Identities=16% Similarity=0.174 Sum_probs=225.9
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc-ChHHHHHHHHHcCCCccccccCC--CCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE-SEMEVKGLLDDLGIREKQQFPIS--QYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~-~~~~~~~l~~~lGl~~~~~~~~~--~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+||||+||+|||++|+...+-.+|+||+|+++ .++++++++++.|....+..+.. ..+.-+..+|+.+ |..+.+.
T Consensus 49 ~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~tg~~~~~~~~~~~~g~~V--~~~~~~~ 126 (498)
T KOG0685|consen 49 LILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVTGPAYVDNFHTRSNGEVV--PEELLDE 126 (498)
T ss_pred EEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccCCccccceeEEEecCccC--cHHHHHH
Confidence 58999999999999999887799999999997 67899999999983221221111 1111123466532 2222221
Q ss_pred hhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHH------------HHHHHhhhhhc----cccc
Q 013082 78 LTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGRE------------VVDFLIDPFVA----GTSA 141 (450)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~------------~~~~l~~p~~~----~~~~ 141 (450)
+. +.........+...+ ..+..|+.+|+.+.|... ++..+++-|+. -...
T Consensus 127 ~~-------~~~~~~~~~~r~~~~-------~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~ 192 (498)
T KOG0685|consen 127 LN-------EITVTLSDKLREAEI-------AHDEGSVGEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGA 192 (498)
T ss_pred HH-------HHHHhhhhhcccccc-------cCccccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeecc
Confidence 11 111111122211111 245678888887643322 22333332222 1112
Q ss_pred CCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc-------
Q 013082 142 GDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH------- 214 (450)
Q Consensus 142 ~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~------- 214 (450)
.+.+++|.+..... + ...| ....-..+-|+..++.-|+.
T Consensus 193 d~l~evs~~~~~ey-~---~~~g------------------------------e~~~~~~~kGy~~iL~~l~~~~p~~~i 238 (498)
T KOG0685|consen 193 DNLSEVSLRALLEY-T---ECPG------------------------------EELLIWNKKGYKRILKLLMAVIPAQNI 238 (498)
T ss_pred Cchhhhhhhhccce-e---ecCc------------------------------hhhheechhHHHHHHHHHhccCCCcch
Confidence 22223332211000 0 0000 00112445566666655431
Q ss_pred -cC--------C-------ccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhh--hccCCCCC-cCCCCCCCCCCC
Q 013082 215 -DG--------R-------SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMK--ITKGGNLF-PLDFLPEVIYMP 275 (450)
Q Consensus 215 -~~--------~-------~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll--~~~~~~p~-~~~~l~~~~y~~ 275 (450)
.+ . +..+.+.|++.||+ .+.||+||||+|+.++++-. .|.|..|. +.++|+++.|+.
T Consensus 239 ~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~----v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGt 314 (498)
T KOG0685|consen 239 ELGLWKRIHLNTRVENINWKNTGEVKLRCSDGE----VFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGT 314 (498)
T ss_pred hcCchhhhcccccceeeccCCCCcEEEEEeCCc----EEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCc
Confidence 01 1 12355899999996 79999999999999999932 13555554 568999999999
Q ss_pred eEEEEEEecCCCCCCCCCCeeEEecCCC-C-CC-----C-CceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCC
Q 013082 276 LSVIITTFKKENVRRPLEGFGVLVPSKE-Q-QN-----G-LKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKAS 347 (450)
Q Consensus 276 ~~~v~l~~~~~~~~~~~~~~g~~~~~~~-~-~~-----~-~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~ 347 (450)
+.|++|.|.+|+||.++.++..++-+.+ . .. + ..+ +.|....+ + ..+|.+++.|..+..+.+++
T Consensus 315 v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~--~~f~~v~~---~---~~vL~gWiaG~~~~~me~ls 386 (498)
T KOG0685|consen 315 VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDI--MGFQPVSW---A---PNVLLGWIAGREARHMETLS 386 (498)
T ss_pred cceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhc--eEEEEcCc---c---hhhhheeccCCcceehhhCC
Confidence 9999999999999877777777764432 0 00 0 011 11221111 1 24888899988888888999
Q ss_pred HHHHHHHHHHHHHHHhC-CC-CCCceEEeeccC------CCCCCCCCCHHH----HHHHHHH--HHhhCCCeEEecCCcC
Q 013082 348 TDELKQIVTSDLRQLLG-VE-GDPAFVNHFFWS------KAFPLYGRDYDS----VLEAIEK--METNLPGFFYAGNHRG 413 (450)
Q Consensus 348 ~eel~~~~~~~L~~~~~-~~-~~p~~~~v~~w~------~a~p~~~~g~~~----~~~~~~~--~~~~~~~l~~aG~~~~ 413 (450)
|||+.+.+...|+++++ .. ++|..+..+.|. ++|...++|... .++.-.+ ....-|.|.|||+++.
T Consensus 387 dEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaTh 466 (498)
T KOG0685|consen 387 DEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATH 466 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEcccccc
Confidence 99999999999999997 33 578888888893 334334444321 1110001 1123356999999962
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHhccc
Q 013082 414 ---GLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 414 ---g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
...++||+.||.+.|+++++.+...
T Consensus 467 r~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 467 RTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred ccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 3458999999999999999866543
No 21
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.96 E-value=1.3e-29 Score=254.86 Aligned_cols=392 Identities=21% Similarity=0.262 Sum_probs=223.7
Q ss_pred CeeccCCCCCeeEEEEecC--cEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCE--EeecCCChhH
Q 013082 1 MVFEADERAGGKLRSISKD--GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGV--PFLIPTNPIA 76 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~--g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~--~~~~p~~~~~ 76 (450)
|||||++|+|||++|++.+ |+.+|.|+|+|+..++.+..++.++|+...+.........+++.... ....+.....
T Consensus 18 ~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (450)
T PF01593_consen 18 TVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFVYWPFGDGRPPWPPSQLP 97 (450)
T ss_dssp EEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEEEEEEEEEEEEEEECHHH
T ss_pred EEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceeeecccccccccccccccc
Confidence 6999999999999999988 99999999999888788999999999865544322222222322221 1111111111
Q ss_pred hh-----------hc-ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHh-hcHHHHHHHhhhhhcccccCC
Q 013082 77 LL-----------TS-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-FGREVVDFLIDPFVAGTSAGD 143 (450)
Q Consensus 77 ~~-----------~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-~~~~~~~~l~~p~~~~~~~~~ 143 (450)
.. .. ..+....+.....+........ . .......++.+|+... +.+...+.++.++........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (450)
T PF01593_consen 98 RNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEP--E-FLEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFL 174 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccccccccchhccchhhhhhhhh--h-hhhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccc
Confidence 00 00 0000000000000000000000 0 0112345666666443 222233334555555555555
Q ss_pred cccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc-------cC
Q 013082 144 PESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH-------DG 216 (450)
Q Consensus 144 ~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~-------~~ 216 (450)
+...++.+....+. .......... ..........|++..+...+.. .+
T Consensus 175 ~~~~~~~~~~~~~~-----~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~ 229 (450)
T PF01593_consen 175 PDESSAALALLSFP-----HFDLQDNGGY--------------------FPFGGLTVGMGGLSLALALAAEELGGEIRLN 229 (450)
T ss_dssp HCTTTHHHHHHHHH-----HCHHHHHHHH--------------------TTSSTEEEETTTTHHHHHHHHHHHGGGEESS
T ss_pred cchhhhhHHHhhhh-----hccccccccc--------------------ccccceeecccchhHHHHHHHhhcCceeecC
Confidence 55555442111110 0000000000 0112223445555555433221 11
Q ss_pred ------CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCC
Q 013082 217 ------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVR 289 (450)
Q Consensus 217 ------~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~ 289 (450)
+..++++.|++.+|+ +++||+||+|+|++.+.++. +.+..|. ..++++.++|.++.+|++.|+.++|+
T Consensus 230 ~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~~~l~~i~-~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~ 304 (450)
T PF01593_consen 230 TPVTRIEREDGGVTVTTEDGE----TIEADAVISAVPPSVLKNIL-LLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWP 304 (450)
T ss_dssp EEEEEEEEESSEEEEEETTSS----EEEESEEEE-S-HHHHHTSE-EESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGG
T ss_pred Ccceeccccccccccccccce----EEecceeeecCchhhhhhhh-hcccccccccccccccccCcceeEEEeeeccccc
Confidence 223567999999985 89999999999999999732 2444444 45667899999999999999999886
Q ss_pred CCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC--CC
Q 013082 290 RPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV--EG 367 (450)
Q Consensus 290 ~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~--~~ 367 (450)
.....+++++.+.. ....++++++..+.. .+..+++.++.+.....+.+++++++++.++++|+++++. ..
T Consensus 305 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~ 377 (450)
T PF01593_consen 305 PDIDFFGILYSDGF-----SPIGYVSDPSKFPGR--PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIP 377 (450)
T ss_dssp STTTESEEEEESST-----SSEEEEEEECCTTSC--TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGG
T ss_pred ccccccceecccCc-----cccccccccccCccc--ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccc
Confidence 43345677765542 234455666555544 2345666666554445567889999999999999999973 34
Q ss_pred CCceEEeeccCC-CCCCCCCCHHHHH--HHH-HHHHhhC-CCeEEecCCcCC---CChHHHHHHHHHHHHHHH
Q 013082 368 DPAFVNHFFWSK-AFPLYGRDYDSVL--EAI-EKMETNL-PGFFYAGNHRGG---LSVGKSIASGCKAAELVI 432 (450)
Q Consensus 368 ~p~~~~v~~w~~-a~p~~~~g~~~~~--~~~-~~~~~~~-~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~ 432 (450)
+|..+.+++|.. .++.++.++.... ... ..+..++ +||||||||+.+ .++++|+.||++||++|+
T Consensus 378 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 378 DPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp EESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 677888899965 5554443333111 112 2345566 699999999753 379999999999999986
No 22
>PLN02976 amine oxidase
Probab=99.95 E-value=3.5e-27 Score=250.49 Aligned_cols=399 Identities=18% Similarity=0.180 Sum_probs=234.3
Q ss_pred CeeccCCCCCeeEEEEec-CcEEEccCCCccccCh---------HHHHHHHHHcCCCccccccCCCCceEEEECCEEeec
Q 013082 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTESE---------MEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLI 70 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~-~g~~~D~G~~~~~~~~---------~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~ 70 (450)
+|||+++++||++++.+. .|+.+|+|++++++.. ..+..+++++|+...... .....|...+|+. +
T Consensus 720 ~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~qlGl~l~~~~--~~~~~yd~~~G~~--V 795 (1713)
T PLN02976 720 TVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLN--SDCPLYDVVTGEK--V 795 (1713)
T ss_pred EEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhcCCcccccc--CCCceeEccCCcC--C
Confidence 589999999999999874 6899999999988531 234457999999753221 2122333346663 3
Q ss_pred CCChhHhhhcccCChhHHHHHhcccc--ccccCCcccccCCCcCCcHHHHHHHhhcHHH----------------HHHHh
Q 013082 71 PTNPIALLTSNFLSAQSKFQIILEPF--LWKKSDSAKVSAEDAKESVGGFFQRHFGREV----------------VDFLI 132 (450)
Q Consensus 71 p~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~----------------~~~l~ 132 (450)
|......+.. ..-+++.... ..... ....++|+.+||...+.... .+.++
T Consensus 796 ~~e~~~~v~~------~fn~lld~~~~~~~~~g------~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1713)
T PLN02976 796 PADLDEALEA------EYNSLLDDMVLLVAQKG------EHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLY 863 (1713)
T ss_pred CHHHHHHHHH------HHHHHHHHHHHHHhhcc------cCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhh
Confidence 3332221110 0001111100 00100 12347899999885442111 01122
Q ss_pred hhhhcccccCCcccchhhccchhHHHH------HHh-c--CChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEecc
Q 013082 133 DPFVAGTSAGDPESLVMRHSFPELWNL------EKR-Y--GSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLG 203 (450)
Q Consensus 133 ~p~~~~~~~~~~~~~Sa~~~~~~l~~~------~~~-~--gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (450)
......+-+.++++.++...+....+. ... + +..+..+ +.. .+ ..+. .+.. .....+.++|
T Consensus 864 ~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV-----Sl~-~~--~qd~-~y~~-fgG~~~rIkG 933 (1713)
T PLN02976 864 DSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV-----SLP-YW--NQDD-VYGG-FGGAHCMIKG 933 (1713)
T ss_pred hhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh-----hhh-hh--hccc-cccc-CCCceEEeCC
Confidence 222222334445555543332221110 000 0 0000000 000 00 0000 0000 1223467999
Q ss_pred chHHHHHhcccc-----C------Cc----------cCCCeEEEecCCCccccceecCEEEEcCChhhhhh--hhhccCC
Q 013082 204 GMQVLSLSYSHD-----G------RS----------ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGG 260 (450)
Q Consensus 204 G~~~l~~~l~~~-----~------~~----------~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~--ll~~~~~ 260 (450)
||++|+++|+.. + .. .+++|.|++.+|+ ++.||+||+|+|+++++. +. |.|.
T Consensus 934 GYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe----tftADaVIVTVPLGVLKag~I~-FsPP 1008 (1713)
T PLN02976 934 GYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS----EFLGDAVLITVPLGCLKAETIK-FSPP 1008 (1713)
T ss_pred CHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC----EEEeceEEEeCCHHHhhhcccc-cCCc
Confidence 999999887531 1 11 1356889988885 799999999999999983 44 5555
Q ss_pred CCCc-CCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCC
Q 013082 261 NLFP-LDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339 (450)
Q Consensus 261 ~p~~-~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~ 339 (450)
.|+. .++|+++.|+.+.+|+|.|++++|+.....||....... ..+.+|. .|+...+.+..+|.+++.|..
T Consensus 1009 LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtd------lrG~~~~--~wnlr~psG~pVLVafv~G~a 1080 (1713)
T PLN02976 1009 LPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETD------LRGQCFM--FWNVKKTVGAPVLIALVVGKA 1080 (1713)
T ss_pred ccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCC------CCceEEE--eccCCCCCCCCEEEEEeccHh
Confidence 5553 467899999999999999999999755566665432211 1222222 122223345557777777766
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHhCCC--CCCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhCCC-eEEecC
Q 013082 340 NKELAKASTDELKQIVTSDLRQLLGVE--GDPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNLPG-FFYAGN 410 (450)
Q Consensus 340 ~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~-l~~aG~ 410 (450)
+..+..++++++++.+++.|+++||.. +.|..+.+++|. ++|..+.+|..... ...+..|+.+ |||||+
T Consensus 1081 AreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d--~d~LAePVggRLFFAGE 1158 (1713)
T PLN02976 1081 AIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGED--YDILGRPVENCLFFAGE 1158 (1713)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchH--HHHHhCCCCCcEEEEeh
Confidence 666778899999999999999999853 478999999994 34444455643211 1234456655 999999
Q ss_pred CcC--C-CChHHHHHHHHHHHHHHHHHhcccch
Q 013082 411 HRG--G-LSVGKSIASGCKAAELVISYLEKSSD 440 (450)
Q Consensus 411 ~~~--g-~~~~~ai~SG~~aA~~i~~~~~~~~~ 440 (450)
++. . ..++||+.||.+||++|+..+.+..+
T Consensus 1159 ATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1159 ATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred hhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 962 2 24899999999999999998866433
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=224.57 Aligned_cols=384 Identities=17% Similarity=0.109 Sum_probs=227.6
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCC-ceEEEECCEEeecCC---ChhH
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQY-KRYVVRNGVPFLIPT---NPIA 76 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~-~~~~~~~G~~~~~p~---~~~~ 76 (450)
+|||+++|+|||+.|.+..|.+.|+|++.+.++++.++.+++++|+...-...+..+ ..|++. ....|. ....
T Consensus 34 ~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~fi~~g~~~~~~~~~---~~~~p~~~~~~~~ 110 (450)
T COG1231 34 QILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPFIRDGDNVIGYVGS---SKSTPKRSLTAAA 110 (450)
T ss_pred EEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCceeccCccccccccc---ccccchhccchhh
Confidence 589999999999999999889999999988888899999999999976422211111 111111 111121 1111
Q ss_pred hhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcc-ccc-CCcccchhhccch
Q 013082 77 LLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAG-TSA-GDPESLVMRHSFP 154 (450)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~-~~~-~~~~~~Sa~~~~~ 154 (450)
.+....-....+.+...+........ ..+.+.+++.+| +.++ .+.|-.+.-.. .++ .++.+.+...-+.
T Consensus 111 d~~~~~~~~~~~a~~~~~~~~~~t~~----~~e~~~~~~~~W--~~~~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~ 181 (450)
T COG1231 111 DVRGLVAELEAKARSAGELDPGLTPE----DRELDLESLAAW--KTSS---LRGLSRDPGARVSPGPIEPGDVSLLHDAL 181 (450)
T ss_pred hhcchhhhhhhhhhcccccCcccCcc----hhhhhhHHHHhh--hhcc---ccccccCccceeccCCCCcccccchhhhh
Confidence 11111000011111111111111111 135677889999 2222 22222221111 122 3333433222111
Q ss_pred hHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------------CCccCC
Q 013082 155 ELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------------GRSALE 221 (450)
Q Consensus 155 ~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------------~~~~~~ 221 (450)
.++. -.++..++. ...+..++...|||++|+++++.. ..+.++
T Consensus 182 ~~~~----~~~~~~~~~--------------------~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~ 237 (450)
T COG1231 182 PLRS----ASVVDRGIG--------------------GEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGD 237 (450)
T ss_pred hhhh----hhhcccccc--------------------ccccchhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCC
Confidence 1100 000000000 011233455569999999987631 123578
Q ss_pred CeEEEecCCCccccceecCEEEEcCChhhhhhhhhccC-CCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEec
Q 013082 222 NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVP 300 (450)
Q Consensus 222 ~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~-~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~ 300 (450)
+|+|++.+.. ++++|.||||+|+.++.+|. +.| .++++++.+..++|.++.++.+.|++++|...-..-|.-+.
T Consensus 238 gV~Vt~~~~~----~~~ad~~i~tiPl~~l~qI~-f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~t 312 (450)
T COG1231 238 GVTVTADDVG----QYVADYVLVTIPLAILGQID-FAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLT 312 (450)
T ss_pred eEEEEeCCcc----eEEecEEEEecCHHHHhhcc-cCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEee
Confidence 8999998832 89999999999999999997 566 34457788889999999999999999999642212233332
Q ss_pred CCCCCCCCceEEEEeccCCCCCCCCCCcEEEE-EEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC-CCCCceE-Eeecc
Q 013082 301 SKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYT-TFVGGSRNKELAKASTDELKQIVTSDLRQLLGV-EGDPAFV-NHFFW 377 (450)
Q Consensus 301 ~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~-~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~-~~~p~~~-~v~~w 377 (450)
+. .+..+.++|+ +.. +|..+|. .|+-+..+..|..+++++..+.++..+.+++|. ..++... ..++|
T Consensus 313 D~------~~~~i~~~s~--~~~--~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W 382 (450)
T COG1231 313 DL------GLGFISYPSA--PFA--DGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDW 382 (450)
T ss_pred cC------CcceEecCcc--ccC--CCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeec
Confidence 21 2333344554 211 2444554 354455566788899999999999999999984 4566555 78889
Q ss_pred CCCCCCCCCCHHHH------HHHHHHHHhhCCCeEEec-CCc--CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 378 SKAFPLYGRDYDSV------LEAIEKMETNLPGFFYAG-NHR--GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 378 ~~a~p~~~~g~~~~------~~~~~~~~~~~~~l~~aG-~~~--~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.. . .|+.|+... ...++.+..+.++||||| ++. .+..++|||+||++||.+|...+++
T Consensus 383 ~~-d-pwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 383 SK-D-PWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred cc-C-CcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 64 2 355553221 111223445667899999 663 2234999999999999999988865
No 24
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=9.8e-24 Score=210.83 Aligned_cols=222 Identities=17% Similarity=0.205 Sum_probs=154.2
Q ss_pred EeccchHHHHHhcccc-----C------CccCCC-eEEEecCCCccccceecCEEEEcCChhhhhh--hhhccCCCCCc-
Q 013082 200 SFLGGMQVLSLSYSHD-----G------RSALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNLFP- 264 (450)
Q Consensus 200 ~~~gG~~~l~~~l~~~-----~------~~~~~~-~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~--ll~~~~~~p~~- 264 (450)
.+.+|+..++.+++.. + ...+++ +.+++.++. .+.+|+||+|+|+++++. +. |.|.+|..
T Consensus 213 ~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~~~~~~~----~~~~d~vvvt~pl~vLk~~~i~-F~P~Lp~~k 287 (501)
T KOG0029|consen 213 LMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKVTVETGD----GYEADAVVVTVPLGVLKSGLIE-FSPPLPRWK 287 (501)
T ss_pred HhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEEEEECCC----eeEeeEEEEEccHHHhccCcee-eCCCCcHHH
Confidence 5788999998887631 1 112223 456666664 599999999999999999 54 55556654
Q ss_pred CCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCC
Q 013082 265 LDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELA 344 (450)
Q Consensus 265 ~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~ 344 (450)
.++|+++.++.+.+|.+.|++.+|+.+.+.||.+...... .... +|.+. .|. + +..+|.+++.+..+..+.
T Consensus 288 ~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~----~~~~-~f~~~-~~~--~-~~~~l~~~~~~~~a~~~~ 358 (501)
T KOG0029|consen 288 QEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVL----RGLF-TFYDC-KPV--A-GHPVLMSVVVGEAAERVE 358 (501)
T ss_pred HHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccc----cchh-hhhhc-Ccc--C-CCCeEEEEehhhhhHHHh
Confidence 4789999999999999999999997566667766433321 1111 23332 121 1 223555555555555677
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CCCCCceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhCCC-eEEecCCc--C
Q 013082 345 KASTDELKQIVTSDLRQLLG--VEGDPAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNLPG-FFYAGNHR--G 413 (450)
Q Consensus 345 ~~~~eel~~~~~~~L~~~~~--~~~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~-l~~aG~~~--~ 413 (450)
.++++++++.++..|+++|+ ....|.++.+.+|. .+++.+.++.... .+..+.++..+ +||||+++ .
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~--~y~~l~~pi~~~~ffage~t~~~ 436 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGD--DYDRLAEPIKNRVFFAGEATSRK 436 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChh--HHHHHhccccCcEEecchhhccc
Confidence 89999999999999999998 33578999999993 3343444443321 23344566666 99999996 2
Q ss_pred C-CChHHHHHHHHHHHHHHHHHhcc
Q 013082 414 G-LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 414 g-~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
. .+++||+.||.++|..|+..+..
T Consensus 437 ~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 437 YPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CCCchHHHHHhhHHHHHHHHHHHHh
Confidence 2 35999999999999999988874
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.90 E-value=1.4e-21 Score=200.24 Aligned_cols=394 Identities=15% Similarity=0.152 Sum_probs=222.2
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCC--ccccc-cCCCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIR--EKQQF-PISQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~--~~~~~-~~~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+|||+++++||+++|++.+||.+|.|+|++... ..+.++++++|+. +.+.+ +.+....+++.+|+.+.++.+...+
T Consensus 25 ~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (502)
T TIGR02734 25 TVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEEL 103 (502)
T ss_pred EEEECCCCCcCceEEEecCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHH
Confidence 589999999999999999999999999988643 4578899999853 32222 1122233344467777777654322
Q ss_pred hhc--ccCCh-hHHH-----------HHhccccccccCC---------cccccCCCcCCcHHHHHHHhhcHHHHHHHhhh
Q 013082 78 LTS--NFLSA-QSKF-----------QIILEPFLWKKSD---------SAKVSAEDAKESVGGFFQRHFGREVVDFLIDP 134 (450)
Q Consensus 78 ~~~--~~l~~-~~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p 134 (450)
... .+.+. .+.+ +.....+...... ...........|+.+|+++.+..+.++.++.
T Consensus 104 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~- 182 (502)
T TIGR02734 104 EAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFS- 182 (502)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhc-
Confidence 110 11100 0000 0000000000000 0000012357899999999888888887776
Q ss_pred hhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc
Q 013082 135 FVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH 214 (450)
Q Consensus 135 ~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 214 (450)
+....++.+|.+.++.+.+ .. +.. ...+.+++.||++.+.+++..
T Consensus 183 ~~~~~~g~~p~~~~~~~~l---~~-----------~~~---------------------~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 183 FHALFLGGNPFRTPSIYAL---IS-----------ALE---------------------REWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred ccceeeccCcccchHHHHH---HH-----------HHH---------------------hhceEEEcCCCHHHHHHHHHH
Confidence 3445677888877753321 10 000 023457889999999888742
Q ss_pred c----------CC------ccCCC-eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCC-CC-CcCCCCCCCCC-C
Q 013082 215 D----------GR------SALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG-NL-FPLDFLPEVIY-M 274 (450)
Q Consensus 215 ~----------~~------~~~~~-~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~-~p-~~~~~l~~~~y-~ 274 (450)
. +. ..+++ +.|++++|+ .+.||.||+|+++..+...| .++. .+ ...+.++++++ .
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~ 302 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADLHHTYRRL-LPNHPRRRYPAARLSRKRPSP 302 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcHHHHHHHh-cCccccccccccccccCCcCC
Confidence 1 11 11223 567777774 78999999999998777543 2332 22 23345666665 4
Q ss_pred CeEEEEEEec---CCCCCCCCCCeeEEecCCCCC-----------CCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCC
Q 013082 275 PLSVIITTFK---KENVRRPLEGFGVLVPSKEQQ-----------NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRN 340 (450)
Q Consensus 275 ~~~~v~l~~~---~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~ 340 (450)
++.+++++++ ++ ++. ...+.+++..+.+. ...+.+.+...|..-|..+|+|++++.+++.....
T Consensus 303 s~~~~~lgl~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~ 380 (502)
T TIGR02734 303 SLFVLYFGLLGVDGH-WPQ-LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHL 380 (502)
T ss_pred eeeEEEEeeccccCc-CCC-cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCC
Confidence 6677899998 33 232 12223333222100 00123333333444467789888766555432211
Q ss_pred ----CcCCCCCHHHHHHHHHHHHHHH-h-CCCCCCceEEee---ccCC--CCCCCCC-CHHHHHHH---HHH--HHhhCC
Q 013082 341 ----KELAKASTDELKQIVTSDLRQL-L-GVEGDPAFVNHF---FWSK--AFPLYGR-DYDSVLEA---IEK--METNLP 403 (450)
Q Consensus 341 ----~~~~~~~~eel~~~~~~~L~~~-~-~~~~~p~~~~v~---~w~~--a~p~~~~-g~~~~~~~---~~~--~~~~~~ 403 (450)
.+|. ...+++.+++++.|+++ + ++....+...+. .|.. ..+.-+. |....+.+ +++ ..++++
T Consensus 381 ~~~~~~~~-~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~ 459 (502)
T TIGR02734 381 GTADVDWS-VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKID 459 (502)
T ss_pred CCCCCCcH-HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCC
Confidence 1232 23577899999999987 5 444333222221 1111 1111111 11111111 122 235678
Q ss_pred CeEEecCCc-CCCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 404 GFFYAGNHR-GGLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 404 ~l~~aG~~~-~g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
|||+||+++ +|.|+.+|+.||+.+|+.|++++....
T Consensus 460 gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 460 NLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999996 678999999999999999998765543
No 26
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.87 E-value=5.7e-21 Score=195.07 Aligned_cols=392 Identities=14% Similarity=0.106 Sum_probs=209.3
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc--ChHHHHHHHHHcCCCcc-ccccCCCCceEEEECC-EEeecCCChhH
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDLGIREK-QQFPISQYKRYVVRNG-VPFLIPTNPIA 76 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~--~~~~~~~l~~~lGl~~~-~~~~~~~~~~~~~~~G-~~~~~p~~~~~ 76 (450)
+|||+++++|||++|++.+||.||.|+|++.. ....+..++++||+... +... .......+.+| ..+.++.+...
T Consensus 28 ~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-d~~~~~~~~dg~~~~~~~~d~~~ 106 (492)
T TIGR02733 28 TLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAKIL-DPACAVDLPDGSEPIPLWHDPDR 106 (492)
T ss_pred EEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccccC-CCCcEEEECCCceEeeeecCHHH
Confidence 58999999999999999999999999998853 22346788999998632 2222 22233344466 34444444432
Q ss_pred hhhc--ccCChhH-HHHHh------------ccccc-cccC----------Cccc-ccCCCcCCcHHHHHHHh--hcHHH
Q 013082 77 LLTS--NFLSAQS-KFQII------------LEPFL-WKKS----------DSAK-VSAEDAKESVGGFFQRH--FGREV 127 (450)
Q Consensus 77 ~~~~--~~l~~~~-~~~~~------------~~~~~-~~~~----------~~~~-~~~~~~~~s~~~~l~~~--~~~~~ 127 (450)
.... ..++... .++.+ ..++. .... .... ........|+.+|+++. +..+.
T Consensus 107 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 186 (492)
T TIGR02733 107 WQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRR 186 (492)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHH
Confidence 2110 0010000 00000 00000 0000 0000 00113458999999875 56667
Q ss_pred HHHHhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHH
Q 013082 128 VDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV 207 (450)
Q Consensus 128 ~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 207 (450)
++.++...+....+.++++.++.+.+..+. +. ....+.++++||+++
T Consensus 187 lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---------------------~~~~G~~~~~GG~~~ 233 (492)
T TIGR02733 187 LRRFLDLQLKLYSQEDADETAALYGATVLQ------------MA---------------------QAPHGLWHLHGSMQT 233 (492)
T ss_pred HHHHHHHHHhhhccCChhhhhHHHHHHHhh------------cc---------------------ccCCCceeecCcHHH
Confidence 777777544323345555666433211100 00 012356789999999
Q ss_pred HHHhcccc----------CCc------cCCC-eEEEecCC-CccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCC
Q 013082 208 LSLSYSHD----------GRS------ALEN-WSLCSSNQ-EKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLP 269 (450)
Q Consensus 208 l~~~l~~~----------~~~------~~~~-~~v~~~~g-~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~ 269 (450)
|+++|+.. +.+ .+++ ..|.+.++ .++.+.+.||+||+|+|+..+.+|+..+..++...+.++
T Consensus 234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~ 313 (492)
T TIGR02733 234 LSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLK 313 (492)
T ss_pred HHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHh
Confidence 99888521 111 1222 12223232 111236899999999999999998721122334455677
Q ss_pred CCCCCCe-EEEEEEecCCCCCCCC-CCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCC--
Q 013082 270 EVIYMPL-SVIITTFKKENVRRPL-EGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAK-- 345 (450)
Q Consensus 270 ~~~y~~~-~~v~l~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~-- 345 (450)
+++|.+. .++++++++...+... ..+...... . ...-+.. ++.-|..+|+|+.++++++.... ..|..
T Consensus 314 ~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~v~~-~~~d~~~aP~G~~~l~~~~~~~~-~~~~~~~ 385 (492)
T TIGR02733 314 KLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-Q-----GSLFVSI-SQEGDGRAPQGEATLIASSFTDT-NDWSSLD 385 (492)
T ss_pred cCCCCCceEEEEEeecccccCCCCCcceeeccCC-C-----ceEEEEe-CCccccCCCCCceEEEEEcCCCH-HHHcCCC
Confidence 8888764 4789999874322111 222222211 1 1111111 22335678888887765543221 11111
Q ss_pred -----CCHHHHHHHHHHHHHHHh-CCCCCCceEEee---ccCC--CCCC---CCCCHHHHHH-HHH-HHHhhCCCeEEec
Q 013082 346 -----ASTDELKQIVTSDLRQLL-GVEGDPAFVNHF---FWSK--AFPL---YGRDYDSVLE-AIE-KMETNLPGFFYAG 409 (450)
Q Consensus 346 -----~~~eel~~~~~~~L~~~~-~~~~~p~~~~v~---~w~~--a~p~---~~~g~~~~~~-~~~-~~~~~~~~l~~aG 409 (450)
.-.+++.+++++.|++++ ++....+...+. .|.. ..+. |...+.-.+. .++ ...++++|||+||
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G 465 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCG 465 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEec
Confidence 124668889999999887 454433222221 1110 1111 1111100000 011 1135788999999
Q ss_pred CCc-CCCChHHHHHHHHHHHHHHHHH
Q 013082 410 NHR-GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 410 ~~~-~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++ +|.|+.+++.||+.+|+.|++.
T Consensus 466 ~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 466 DSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 996 6788999999999999999753
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.86 E-value=3.5e-22 Score=176.35 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=141.6
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccC---CCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCC
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG---GNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~---~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~ 294 (450)
.++.|+|++++|+ ....+|.||+|+|+|++..|| .+ ..|. +++.+..+.|.||+.+.++|..+. +.+..
T Consensus 132 ~~~~W~l~~~~g~---~~~~~d~vvla~PAPQ~~~LL--t~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l-~~P~~- 204 (331)
T COG3380 132 TDNDWTLHTDDGT---RHTQFDDVVLAIPAPQTATLL--TTDADDLPAALRAALADVVYAPCWSAVLGYPQPL-DRPWP- 204 (331)
T ss_pred cCCeeEEEecCCC---cccccceEEEecCCCcchhhc--CcccccchHHHHHhhccceehhHHHHHhcCCccC-CCCCC-
Confidence 3578999997774 378899999999999999998 33 2333 667899999999999999998663 33333
Q ss_pred eeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC-CCCCceEE
Q 013082 295 FGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV-EGDPAFVN 373 (450)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~-~~~p~~~~ 373 (450)
|.++ ++ .+ ++++--++..+++.|.+. ++++..+..++..+.+.++|+.++.+........+. .++|.+..
T Consensus 205 -G~~v-dg-----~~-laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~ 275 (331)
T COG3380 205 -GNFV-DG-----HP-LAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSD 275 (331)
T ss_pred -Cccc-CC-----Ce-eeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHH
Confidence 3332 22 22 333332323467778765 555666666777777888888887777777766653 36889999
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHh
Q 013082 374 HFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 374 v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+|+|+|+.|.-..+..... ...--+||+||||+.|.-+|+|+.||..+|+.|++.|
T Consensus 276 ~H~WrYA~P~~~~~~~~L~------ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 276 AHRWRYAIPNDAVAGPPLD------ADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhccccccccccccCCccc------cCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence 9999999997555443221 1122379999999998789999999999999998754
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=158.76 Aligned_cols=358 Identities=18% Similarity=0.220 Sum_probs=211.9
Q ss_pred CeeccCCCCCeeEEEEe----cCcEEEccCCCcccc-ChHHHHHHHHHcCCCccccccCCCCceEEE--ECCEE-ee-cC
Q 013082 1 MVFEADERAGGKLRSIS----KDGLIWDEGANTMTE-SEMEVKGLLDDLGIREKQQFPISQYKRYVV--RNGVP-FL-IP 71 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~----~~g~~~D~G~~~~~~-~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~--~~G~~-~~-~p 71 (450)
|||||.+|+||+++|.. -+|+.+|.|.+++.. +||++..|++++|....-.+ .+|-. .+|.+ |. .+
T Consensus 34 TLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~as~-----Msf~v~~d~gglEy~g~t 108 (447)
T COG2907 34 TLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTKASF-----MSFSVSLDMGGLEYSGLT 108 (447)
T ss_pred EEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCcccc-----eeEEEEecCCceeeccCC
Confidence 69999999999999994 357899999998885 79999999999999753211 22211 12222 11 11
Q ss_pred CChhHhh--hcccCChhHHHHHhccccccccCCccccc-CCCcCCcHHHHHHH-hhcHHHHHHHhhhhhcccccCCcccc
Q 013082 72 TNPIALL--TSNFLSAQSKFQIILEPFLWKKSDSAKVS-AEDAKESVGGFFQR-HFGREVVDFLIDPFVAGTSAGDPESL 147 (450)
Q Consensus 72 ~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~l~~-~~~~~~~~~l~~p~~~~~~~~~~~~~ 147 (450)
.+..++ +.+++.+ ....++.+.++.-..+..+.+ ....++|+++||++ +|+..+++.++.|+..++|+.+..++
T Consensus 109 -gl~~L~aqk~n~l~p-Rf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~ 186 (447)
T COG2907 109 -GLAGLLAQKRNLLRP-RFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADA 186 (447)
T ss_pred -Cccchhhccccccch-hHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhh
Confidence 011122 1233322 233444443321111000000 24568999999977 69999999999999999999999998
Q ss_pred hhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------C----
Q 013082 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G---- 216 (450)
Q Consensus 148 Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~---- 216 (450)
+..-+ ..+..+.+++|++. +. .++-.+++.||....+++|+.. +
T Consensus 187 ~~~pa-~~~~~f~~nhGll~---l~---------------------~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~ 241 (447)
T COG2907 187 SRYPA-CNFLVFTDNHGLLY---LP---------------------KRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVC 241 (447)
T ss_pred hhhhH-HHHHHHHhccCcee---cC---------------------CCCceeEcccchHHHHHHHhccccceeecCCcee
Confidence 85432 23345566777762 11 1222348999999999888631 1
Q ss_pred --CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCC
Q 013082 217 --RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (450)
Q Consensus 217 --~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~ 294 (450)
.+-.+++.|+..+|. +..+|+||+++-+.++..|| +...|+..+.+..+.|.....|.... ....|.....
T Consensus 242 ~l~rlPdGv~l~~~~G~----s~rFD~vViAth~dqAl~mL--~e~sp~e~qll~a~~Ys~n~aVlhtd-~~lmPrR~~A 314 (447)
T COG2907 242 RLRRLPDGVVLVNADGE----SRRFDAVVIATHPDQALALL--DEPSPEERQLLGALRYSANTAVLHTD-ASLMPRRLRA 314 (447)
T ss_pred eeeeCCCceEEecCCCC----ccccceeeeecChHHHHHhc--CCCCHHHHHHHHhhhhhhceeEEeec-cccccccccc
Confidence 123578888877785 78899999999999999998 65677777889999998766555443 3333332211
Q ss_pred ---eeEEecCCCCCCCCceEEEEeccCCCCCCCCCC-cEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCc
Q 013082 295 ---FGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKD-LYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPA 370 (450)
Q Consensus 295 ---~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g-~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~ 370 (450)
+.++. ... ....-..+.|.-+..... +.. .+.++ + ++. .+ .+|-
T Consensus 315 waswny~~-~~~--~e~~~~~lty~mN~lq~l-~~~~~~~vt-l-n~~---~~-----------------------~dpa 362 (447)
T COG2907 315 WASWNYLG-TVQ--WELCQGSLTYWMNRLQAL-ISVRDYFVT-L-NNR---PW-----------------------VDPA 362 (447)
T ss_pred ccccceec-ccc--ccccCcceeccHHHhhcc-cCCcceEEE-e-cCC---cc-----------------------cChH
Confidence 11111 100 001112222322222111 111 12221 1 110 11 1111
Q ss_pred eEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCCh-HHHHHHHHHHHHHHH
Q 013082 371 FVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSV-GKSIASGCKAAELVI 432 (450)
Q Consensus 371 ~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~-~~ai~SG~~aA~~i~ 432 (450)
. ..++..|..|.|.+..-..++.... .+...+-+|||.|+. .|. |+-+.+|..+|+++-
T Consensus 363 ~-v~~~~ty~HPlf~~~avraqq~l~a-lqg~~~twfcgAy~g-~GFHeDg~~aGl~va~~lg 422 (447)
T COG2907 363 H-VIAERTYPHPLFDPEAVRAQQELWA-LQGARRTWFCGAYFG-RGFHEDGLQAGLAVAEDLG 422 (447)
T ss_pred H-hhHHhhcCCcCCCHHHHHHHHHHHh-hhcCCCCCcchhhhc-cccchhhhhhHHHHHHhcC
Confidence 1 1112234456677766654443322 355568999999984 456 558999999998875
No 29
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.77 E-value=9.2e-17 Score=163.97 Aligned_cols=391 Identities=13% Similarity=0.083 Sum_probs=206.1
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccC----h-HHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES----E-MEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI 75 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~----~-~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~ 75 (450)
+|||+++.+||++++++.+||.+|.|+|.+... . ..+.++++.+|....... ......+.+.+|..+.++.+..
T Consensus 27 ~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~d~~ 105 (493)
T TIGR02730 27 LVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIP-DPVQIHYHLPNGLNVKVHREYD 105 (493)
T ss_pred EEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccC-CCccEEEECCCCeeEeeecCHH
Confidence 589999999999999999999999999987632 2 345677887775433222 1212233334665566665554
Q ss_pred Hhhhc--ccCChhHH--H-----------HHhcc--ccccccCCcc-----cc------cCCCcCCcHHHHHHHhhcHHH
Q 013082 76 ALLTS--NFLSAQSK--F-----------QIILE--PFLWKKSDSA-----KV------SAEDAKESVGGFFQRHFGREV 127 (450)
Q Consensus 76 ~~~~~--~~l~~~~~--~-----------~~~~~--~~~~~~~~~~-----~~------~~~~~~~s~~~~l~~~~~~~~ 127 (450)
.+... ..+ +.+. + ..+.. .+........ .. .......|+.+++.+.+..+.
T Consensus 106 ~~~~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 184 (493)
T TIGR02730 106 DFIQELVAKF-PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPG 184 (493)
T ss_pred HHHHHHHHHC-chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHH
Confidence 32211 111 1100 0 00000 0000000000 00 001124788889988777766
Q ss_pred HHHHhhhhhcccccCC-cccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchH
Q 013082 128 VDFLIDPFVAGTSAGD-PESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQ 206 (450)
Q Consensus 128 ~~~l~~p~~~~~~~~~-~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 206 (450)
++.++...+. .++.. +.+.++..+...+ .. ....+.+++.||++
T Consensus 185 l~~~l~~~~~-~~~~~p~~~~p~~~~~~~~--------------~~--------------------~~~~g~~~~~gG~~ 229 (493)
T TIGR02730 185 LLKFIDIECF-CWSVVPADQTPMINAGMVF--------------SD--------------------RHYGGINYPKGGVG 229 (493)
T ss_pred HHHHHHHHHH-hccCCCcccchhhhHHHhh--------------cc--------------------cccceEecCCChHH
Confidence 6767664322 23333 3454432211000 00 01235678999999
Q ss_pred HHHHhcccc----------CCc------cCCC-eEEEecCCCccccceecCEEEEcCChhhhh-hhhhccC--CCCCcCC
Q 013082 207 VLSLSYSHD----------GRS------ALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVK-EMKITKG--GNLFPLD 266 (450)
Q Consensus 207 ~l~~~l~~~----------~~~------~~~~-~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~-~ll~~~~--~~p~~~~ 266 (450)
.++++|... +.+ .+++ +.|++.+|+ .++||.||+++.+..+. +|+ +. .++....
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~~~~~Ll--~~~~~~~~~~~ 303 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWDTFGKLL--KAENLPKKEKN 303 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHHHHHHhC--CccccchhhHH
Confidence 998887521 111 1222 456666664 78999999997665444 565 32 1222222
Q ss_pred CCCCCCC-CCeEEEEEEecCCCCCCCCCCeeEEecCCCC-CCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCC
Q 013082 267 FLPEVIY-MPLSVIITTFKKENVRRPLEGFGVLVPSKEQ-QNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELA 344 (450)
Q Consensus 267 ~l~~~~y-~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~ 344 (450)
.++++++ .+..+++++++....+.....+..++++.+. ....+.+.+...+..-|..+|+|++++++++.. +...|.
T Consensus 304 ~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~-~~~~w~ 382 (493)
T TIGR02730 304 WQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPS-SMEDWQ 382 (493)
T ss_pred HHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCC-Chhhcc
Confidence 3344455 3577899999875322111112222222110 001223333333434467789898888776532 222222
Q ss_pred CC-------CHHHHHHHHHHHHHHHh-CCCCCCceEEee---ccCC--CCCCCCCCHHHHH--HHHH---HHHhhCCCeE
Q 013082 345 KA-------STDELKQIVTSDLRQLL-GVEGDPAFVNHF---FWSK--AFPLYGRDYDSVL--EAIE---KMETNLPGFF 406 (450)
Q Consensus 345 ~~-------~~eel~~~~~~~L~~~~-~~~~~p~~~~v~---~w~~--a~p~~~~g~~~~~--~~~~---~~~~~~~~l~ 406 (450)
++ ..+++.+.+++.|++++ ++.+..+...+. .|.+ +.+.-..|..... .... ...++++|||
T Consensus 383 ~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLy 462 (493)
T TIGR02730 383 GLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLY 462 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeE
Confidence 11 24668899999999987 454333222211 1211 1111111211110 0011 1236788999
Q ss_pred EecCCc-CCCChHHHHHHHHHHHHHHHHHh
Q 013082 407 YAGNHR-GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 407 ~aG~~~-~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+||+++ +|.|+.+|+.||+.+|+.|..++
T Consensus 463 l~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 463 CVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred EecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999996 68899999999999999998764
No 30
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.67 E-value=5.5e-15 Score=143.32 Aligned_cols=336 Identities=10% Similarity=0.003 Sum_probs=193.2
Q ss_pred CeeccCCCCCeeEEEEecCcEE-EccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSISKDGLI-WDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~-~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~ 79 (450)
+|+|+++++||++.+...+|+. .+.|+|+++..++.+.+++.++. .... + . ....++.+|+++++|.+...+-.
T Consensus 28 ~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-~~~~-~--~-~~~~~~~~g~~~~~P~~~~~i~~ 102 (377)
T TIGR00031 28 LVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF-ELNN-Y--Q-HRVLALYNNLDLTLPFNFNQFRK 102 (377)
T ss_pred EEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc-cccc-e--e-EEEEEEECCeEEccCCCHHHHHH
Confidence 5899999999999998777765 49999999988889999998873 2111 1 1 12456779999999987554432
Q ss_pred cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHH---HHhhcHHHHHHHhhhhhcccccCCcccchhhccchhH
Q 013082 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFF---QRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPEL 156 (450)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l 156 (450)
++.. ...+.+.+.+....... ......++++|. .+.+|+.+++.|+.|+..+.|+.+|+++++.|+- ++
T Consensus 103 --l~~~-~~~~~~~~~l~~~~~~~----~~~~~~~~~e~~d~~~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-Rv 174 (377)
T TIGR00031 103 --LLGV-KDAQELQNFFNAQFKYG----DHVPLEELQEIADPDIQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RV 174 (377)
T ss_pred --hccc-chHHHHHHHHHHHhhcc----cCCCCCCHHHHHHHHHHHHHHHHHHHhccccCceeeCCChHHCCHHHeE-ec
Confidence 1211 11122222221110000 011123455554 8899999999999999999999999999998863 11
Q ss_pred HHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-CCcc--CCCe-EEEecCCCc
Q 013082 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-GRSA--LENW-SLCSSNQEK 232 (450)
Q Consensus 157 ~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-~~~~--~~~~-~v~~~~g~~ 232 (450)
-. .. .. + +. .....-+..+++|+..+.++|... +..+ +..+ .+...++.-
T Consensus 175 P~---~~-------~~---d---------~~----yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~ 228 (377)
T TIGR00031 175 PV---VL-------SE---D---------SS----YFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQL 228 (377)
T ss_pred ce---Ee-------cC---C---------CC----cccccccccccccHHHHHHHHHhcCCCEEEeCCccceeeccccce
Confidence 10 00 00 0 00 011222457899999999887521 1110 0000 000011100
Q ss_pred --cccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEe-cCCCCCCCCCCeeEEecCCCCCCCCc
Q 013082 233 --QSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTF-KKENVRRPLEGFGVLVPSKEQQNGLK 309 (450)
Q Consensus 233 --~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 309 (450)
....+ .+.||.|.|++.+-.-- ..+++|.++-. .+.. +.+.. .....+.+|. + .+
T Consensus 229 ~~~~~~~-~~~vi~Tg~id~~f~~~------------~g~L~yrsl~f-~~e~~~~~~~---q~~~~vnyp~-~----~~ 286 (377)
T TIGR00031 229 HFANKAI-RKPVIYTGLIDQLFGYR------------FGALQYRSLKF-EWERHEFKNF---QGYAVVNFPL-N----VP 286 (377)
T ss_pred eeccccc-cCcEEEecCchHHHhhc------------cCcccceeEEE-EEEEeccccC---CCCeEEEcCC-C----CC
Confidence 00012 28899999998876642 44688987655 3343 32221 1222344452 2 24
Q ss_pred eEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHH
Q 013082 310 TLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYD 389 (450)
Q Consensus 310 ~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~ 389 (450)
...++...+..++.. ..+++.- +.|..+....+..+||.......
T Consensus 287 ~tRI~e~k~f~~~~~--~~t~i~~---------------------------------E~~~~~~~~~~~pyYpi~~~~~~ 331 (377)
T TIGR00031 287 ITRIVEYKHLTYVGS--KQTIVSK---------------------------------EYPGEWKVGDPEPYYPVNDNKNM 331 (377)
T ss_pred cceEEeeecCCCCCC--CCeEEEe---------------------------------ecchhhcCCCceeeeeccCHHHH
Confidence 444444433222111 1122210 11111222233456888888877
Q ss_pred HHHHHHHHHHhhCCCeEEecCC--cCCCChHHHHHHHHHHHHHHH
Q 013082 390 SVLEAIEKMETNLPGFFYAGNH--RGGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~ 432 (450)
.....+..+....+||+|+|.. +....|+.||.+|+++|++++
T Consensus 332 ~~~~~y~~la~~~~~v~~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 332 ALFKKYLELASREDNLILLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 7766666655556799999988 556789999999999999875
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.5e-14 Score=141.17 Aligned_cols=392 Identities=17% Similarity=0.096 Sum_probs=230.7
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEE---CCEE--ee-----
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVR---NGVP--FL----- 69 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~---~G~~--~~----- 69 (450)
|||||++++||.+.|++ .+|.+.|+|-|+|++.|++++.|+++++..+.+..... ...|+-. .|-+ +.
T Consensus 27 t~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~p 105 (485)
T COG3349 27 TLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLREH-TKTFVGSGTRPGAIGRFARPDAP 105 (485)
T ss_pred EEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehHhh-hhhhcccCCCCCcccccccCCCC
Confidence 69999999999999998 68999999999999999999999999999876544221 1222111 2211 11
Q ss_pred cCCC-hhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhh-cHHHHHHHhhhhhcccccCCcccc
Q 013082 70 IPTN-PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHF-GREVVDFLIDPFVAGTSAGDPESL 147 (450)
Q Consensus 70 ~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~l~~p~~~~~~~~~~~~~ 147 (450)
.|.. ....+..+.+...+|.+++.......- ...+...+.++.|+.|||++.- ....++..|.|+..+....+++..
T Consensus 106 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~ 184 (485)
T COG3349 106 QPTNGLKAFLRLPQLPRREKIRFVLRLGDAPI-GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGC 184 (485)
T ss_pred CcchhhhhhhhccccCHHHHhHHhhccccccc-hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccC
Confidence 2221 123444466777888887654321100 0011124688999999999843 357888999999999999999999
Q ss_pred hhhccchhHHHHHHh--cCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHH---------HHhcc---
Q 013082 148 VMRHSFPELWNLEKR--YGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVL---------SLSYS--- 213 (450)
Q Consensus 148 Sa~~~~~~l~~~~~~--~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l---------~~~l~--- 213 (450)
|++..+..+...... .++. ...+.|+.... ++.-.
T Consensus 185 sa~~~lt~~~~~~~~~~~~~i-------------------------------~~~~~g~~~E~~~~p~~~yi~~~G~~v~ 233 (485)
T COG3349 185 SARFFLTILNLFLIVTLEASI-------------------------------LRNLRGSPDEVLLQPWTEYIPERGRKVH 233 (485)
T ss_pred cchhHHHHHHHHHHhccCcch-------------------------------hhhhcCCCcceeeehhhhhccccCceee
Confidence 998765554322111 1111 01122222211 11100
Q ss_pred ----ccC------CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCC-CCcCCCCCCCCCCCeEEEEEE
Q 013082 214 ----HDG------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGN-LFPLDFLPEVIYMPLSVIITT 282 (450)
Q Consensus 214 ----~~~------~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~-p~~~~~l~~~~y~~~~~v~l~ 282 (450)
.+. ......+-+.+.+. ..+...++.++.+...+.+..++. .... .+..+.|-.+...+++++++.
T Consensus 234 ~~~pv~~l~l~~~~~~~~~~g~~~~~~--~~e~~~~~~~~~~~~v~~~~~~~p-s~W~~~~~f~~ly~l~~~p~~~~~l~ 310 (485)
T COG3349 234 ADYPVKELDLDGARGLAKVTGGDVTGP--EQEQQAALAVVDAFAVQRFKRDLP-SEWPKWSNFDGLYGLRLVPVITLHLR 310 (485)
T ss_pred ccceeeeeeccccccccceEeeeecCc--ceEeeehhhhhcccccchHhhcCc-ccccccccccccccccccceeEEEEe
Confidence 000 01111233333322 334567888888888888888861 2222 344567778888999999999
Q ss_pred ecCCCCCCCC--CCeeEEe-cCCCCCCCCceEEEEeccCC-CCCCCCCCc-EEEEEEeCCCCCCcCCCCCHHHHHHHHHH
Q 013082 283 FKKENVRRPL--EGFGVLV-PSKEQQNGLKTLGTLFSSMM-FPDRVPKDL-YLYTTFVGGSRNKELAKASTDELKQIVTS 357 (450)
Q Consensus 283 ~~~~~~~~~~--~~~g~~~-~~~~~~~~~~~~~~~~~s~~-~~~~~p~g~-~~l~~~~~~~~~~~~~~~~~eel~~~~~~ 357 (450)
++...+.... ..+++.. -.. .....++++++.+ ++...-.+. ..+...++ ....+...+++++.....+
T Consensus 311 ~~~~~~~~~~~~~~~~~dn~~~s----~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e~ 384 (485)
T COG3349 311 FDGWVTELTDRNQQFGIDNLLWS----DDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFEK 384 (485)
T ss_pred ecCccccccccchhhhhhccccc----cccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHHHH
Confidence 9864332111 1111110 011 1234556665432 222221122 23322222 1234456688899999999
Q ss_pred HHHHHhCC-CCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc--CC-CChHHHHHHHHHHHHHHHH
Q 013082 358 DLRQLLGV-EGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR--GG-LSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 358 ~L~~~~~~-~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~--~g-~~~~~ai~SG~~aA~~i~~ 433 (450)
.+...+.. .....+..+.+-..+....++|....... ..++.+|++++|||. .. .++|+|..||++||+.|..
T Consensus 385 ~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~---~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~ 461 (485)
T COG3349 385 ELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPE---QKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILD 461 (485)
T ss_pred HhhhcCCchhcccccccceeccccccccCCCccccCCC---CCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHH
Confidence 98855422 12234444445455566677776643221 235678999999995 22 3599999999999999997
Q ss_pred Hhcc
Q 013082 434 YLEK 437 (450)
Q Consensus 434 ~~~~ 437 (450)
.+..
T Consensus 462 ~~~~ 465 (485)
T COG3349 462 NLGH 465 (485)
T ss_pred hhhh
Confidence 7653
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=1.8e-13 Score=138.89 Aligned_cols=386 Identities=16% Similarity=0.141 Sum_probs=184.4
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcC-CCcc-ccccC-CCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLG-IREK-QQFPI-SQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lG-l~~~-~~~~~-~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+|||+++++|||++|++.+||.+|.|++++.-.+. ..++++|+ +... +.... ....+..+.+|+...+..++...
T Consensus 30 ~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~ 107 (487)
T COG1233 30 TVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP--GPLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEAT 107 (487)
T ss_pred EEEEecCCCCcceEEEeccceEeccCcceeecCch--HHHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHH
Confidence 58999999999999999999999999987763322 26777777 5443 22211 22233333356666555544322
Q ss_pred hhc-ccCC--hhHHH-----------HHhccccccccCC----------cccccCCCcCCcHHHHHHHhhcHHHHHHHhh
Q 013082 78 LTS-NFLS--AQSKF-----------QIILEPFLWKKSD----------SAKVSAEDAKESVGGFFQRHFGREVVDFLID 133 (450)
Q Consensus 78 ~~~-~~l~--~~~~~-----------~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~ 133 (450)
... ...+ ...++ +.+...+...... ..-........++.+++...|+++..+.++.
T Consensus 108 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~ 187 (487)
T COG1233 108 AELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLA 187 (487)
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHH
Confidence 110 0000 00011 1111111100000 0000001234567777766677666666655
Q ss_pred hhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcc
Q 013082 134 PFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYS 213 (450)
Q Consensus 134 p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 213 (450)
......+ .+|.+.+ .++..+.. .....++++++|||+.|+++|+
T Consensus 188 ~~~~~~~-~~p~~~~--a~~~~~~~---------------------------------~~~~~G~~~p~GG~~al~~aL~ 231 (487)
T COG1233 188 YSAVYGG-APPSTPP--ALYLLLSH---------------------------------LGLSGGVFYPRGGMGALVDALA 231 (487)
T ss_pred HHHHhcC-CCCCchh--HHHHHHHH---------------------------------hcccCCeeeeeCCHHHHHHHHH
Confidence 4322223 5555555 11111110 0134567899999999999986
Q ss_pred cc----------CCc-----cCC--CeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCC-CCCC
Q 013082 214 HD----------GRS-----ALE--NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEV-IYMP 275 (450)
Q Consensus 214 ~~----------~~~-----~~~--~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~-~y~~ 275 (450)
.. +.+ +++ ++.+++.+| +.+++|.||++.-......+. ..... .+..... +..+
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g----~~~~ad~vv~~~~~~~~~~l~--~~~~~--~~~~~~~~~~~~ 303 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG----ENIEADAVVSNADPALLARLL--GEARR--PRYRGSYLKSLS 303 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEeCCcceEEecccc----ceeccceeEecCchhhhhhhh--hhhhh--hccccchhhhhH
Confidence 31 111 122 355555554 378999999997774444443 21111 1111111 1122
Q ss_pred eEEEEEEecCCCCCCCCCCeeEEecCCCCC---C------CCceEEEEeccCCCCCCCCCCcE-EEEEEeCCCCCCcCCC
Q 013082 276 LSVIITTFKKENVRRPLEGFGVLVPSKEQQ---N------GLKTLGTLFSSMMFPDRVPKDLY-LYTTFVGGSRNKELAK 345 (450)
Q Consensus 276 ~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~---~------~~~~~~~~~~s~~~~~~~p~g~~-~l~~~~~~~~~~~~~~ 345 (450)
....++.++.. .+........+..+..+. . ..+.+.+.-.|..-|.++|.|+. .+.-+..-. .....+
T Consensus 304 al~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~-~~~~~~ 381 (487)
T COG1233 304 ALSLYLGLKGD-LLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP-SLGDYD 381 (487)
T ss_pred HHHhccCCCCC-CcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC-cCCChH
Confidence 33456666543 121112222222222100 0 00012233344444678898865 222222111 111122
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCCCceEEee---ccCCCC--CCCCCCHHH-HHHHH---HHH--HhhCCCeEEecCCc-
Q 013082 346 ASTDELKQIVTSDLRQLL-GVEGDPAFVNHF---FWSKAF--PLYGRDYDS-VLEAI---EKM--ETNLPGFFYAGNHR- 412 (450)
Q Consensus 346 ~~~eel~~~~~~~L~~~~-~~~~~p~~~~v~---~w~~a~--p~~~~g~~~-~~~~~---~~~--~~~~~~l~~aG~~~- 412 (450)
...+++.+. +..++++. ++....+...+. .+..-+ +.-+..+.. .+.+. +.. .++++|||+||+++
T Consensus 382 ~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~ 460 (487)
T COG1233 382 ELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTH 460 (487)
T ss_pred HHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCC
Confidence 233455555 44556554 344333222221 111112 111111111 11111 111 25778999999996
Q ss_pred CCCChHHHHHHHHHHHHHHHHHh
Q 013082 413 GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 413 ~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+|.++.++..++...+..+....
T Consensus 461 PG~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 461 PGGGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred CCCCcchhhhhHHHHHhhhcccc
Confidence 78889999999888887776544
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.24 E-value=5.6e-09 Score=104.01 Aligned_cols=209 Identities=12% Similarity=0.113 Sum_probs=127.1
Q ss_pred CeeccCCCCCeeEEEEec--------------------CcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceE
Q 013082 1 MVFEADERAGGKLRSISK--------------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~--------------------~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (450)
+++|+++++||+.+|++. ..+.+|++++.++.++ .+..++...|+..++.+..- ...|
T Consensus 31 LhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G-~lv~lL~~s~v~ryleF~~l-~g~~ 108 (443)
T PTZ00363 31 LHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG-ELVKILLHTDVTRYLEFKVI-DGSY 108 (443)
T ss_pred EEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC-hHHHHHhhcCccceeeeEEe-ceEE
Confidence 479999999999999842 2355889999888764 57789999999888777443 2466
Q ss_pred EE-ECCEEeecCCChhHhhhcccCChhHHHHHhccc--c-ccccCC--cccccCCCcCCcHHHHHHHh-hcHHHHH---H
Q 013082 61 VV-RNGVPFLIPTNPIALLTSNFLSAQSKFQIILEP--F-LWKKSD--SAKVSAEDAKESVGGFFQRH-FGREVVD---F 130 (450)
Q Consensus 61 ~~-~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~~~s~~~~l~~~-~~~~~~~---~ 130 (450)
++ .+|+++++|.+..+.++.+++++.+|.++.+-. + .....+ .++ ....+..|+.+|+++. +.+...+ +
T Consensus 109 v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~-~~~~d~~T~~d~L~~~~ls~~~~d~i~~ 187 (443)
T PTZ00363 109 VYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHK-GLNLKTMTMAQLYKKFGLEDNTIDFVGH 187 (443)
T ss_pred EEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhc-ccCcccCCHHHHHHHhCCCHHHHHHHHH
Confidence 77 799999999999998888899888887654311 1 100000 000 0113468999999773 3343333 3
Q ss_pred HhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHH
Q 013082 131 LIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSL 210 (450)
Q Consensus 131 l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~ 210 (450)
++..+....+. +.++...+.++..+...+ +. .......++.||++.|++
T Consensus 188 ~ial~~~~~~~----~~pa~~tl~ri~~y~~S~-----~~----------------------~g~~p~~yp~gG~g~L~q 236 (443)
T PTZ00363 188 AVALYTNDDYL----NKPAIETVMRIKLYMDSL-----SR----------------------YGKSPFIYPLYGLGGLPQ 236 (443)
T ss_pred HHHhhcccccc----cCCHHHHHHHHHHHHHHH-----hh----------------------ccCCcceeeCCCHHHHHH
Confidence 33333222222 223333332222211110 00 011233577999999998
Q ss_pred hccc----c------CCc------cCCC--eEEEecCCCccccceecCEEEEcCC
Q 013082 211 SYSH----D------GRS------ALEN--WSLCSSNQEKQSLGLSFDAVIMTAP 247 (450)
Q Consensus 211 ~l~~----~------~~~------~~~~--~~v~~~~g~~~~~~~~ad~VI~t~P 247 (450)
++.. . +.+ .+++ +.|++.+|+ ++.|+.||+...
T Consensus 237 al~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge----~i~a~~VV~~~s 287 (443)
T PTZ00363 237 AFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE----VAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc----EEECCEEEECcc
Confidence 8852 1 111 2223 567777774 789999999543
No 34
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=2.2e-07 Score=85.33 Aligned_cols=335 Identities=13% Similarity=0.139 Sum_probs=184.1
Q ss_pred CeeccCCCCCeeEEEEec--CcEE-EccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISK--DGLI-WDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~--~g~~-~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
.|+|+++.+||-|.+... .|+. .--|||.||..+..+++++..+ .+ +.+....-+-+.+|+.+++|.++..+
T Consensus 28 LIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F-~e----~~~Y~hrVla~~ng~~~~lP~nl~ti 102 (374)
T COG0562 28 LIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQF-TE----FNPYQHRVLALVNGQLYPLPFNLNTI 102 (374)
T ss_pred EEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhh-hh----hhhhccceeEEECCeeeeccccHHHH
Confidence 379999999999999975 5764 5679999998889999999888 21 21111112335699999999876654
Q ss_pred hhc-c-cCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchh
Q 013082 78 LTS-N-FLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPE 155 (450)
Q Consensus 78 ~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~ 155 (450)
-.. . ..++.+ ++.+.+-... .. ...+..++++-.-+..|..+++.|+.++..+-||.+|+++.+..+-.
T Consensus 103 ~ql~G~~~~p~~-a~~~i~~~~~-~~------~~~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~R- 173 (374)
T COG0562 103 NQLFGKNFTPDE-ARKFIEEQAA-EI------DIAEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKR- 173 (374)
T ss_pred HHHhCccCCHHH-HHHHHHHhhc-cc------cccchhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcc-
Confidence 321 1 222221 2222221110 11 23566788888888899999999999999999999999998754311
Q ss_pred HHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccccCCccCCCeEEEecCCC--cc
Q 013082 156 LWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQE--KQ 233 (450)
Q Consensus 156 l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~~~~~~v~~~~g~--~~ 233 (450)
+ -..+ .....+++ ..-+.-+++|+-...+.+... ..-.|++.|+--. .+
T Consensus 174 v---PVr~-----~~dn~YF~------------------d~yQGlP~~GYT~~~~kMl~h---p~I~V~Lntd~~~~~~~ 224 (374)
T COG0562 174 L---PVRL-----NFDNRYFS------------------DTYQGLPKDGYTAMFEKMLDH---PNIDVRLNTDFFDVKDQ 224 (374)
T ss_pred c---ceEE-----cccCcccC------------------cccccCccccHHHHHHHHhcC---CCceEEecCcHHHHhhh
Confidence 0 0000 00000110 111125788998888777521 0112333322110 00
Q ss_pred ccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE-ecCCCCCCCCceEE
Q 013082 234 SLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL-VPSKEQQNGLKTLG 312 (450)
Q Consensus 234 ~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 312 (450)
-....+..||.|-|++..=.-- ..+++|.+.--=+-.++.+ ...+.+.+ +|+.+ .++..
T Consensus 225 ~~~~~~~~VvytG~iD~~Fdy~------------~GrL~YRSL~Fe~e~~~~~----~~Qg~~vmNy~~~d----~p~TR 284 (374)
T COG0562 225 LRAIPFAPVVYTGPIDAYFDYC------------FGRLPYRSLDFEWERLNTG----DFQGTAVMNYPDLD----VPYTR 284 (374)
T ss_pred hcccCCCceEEecchHhhhccc------------cccccceeeceEEEEcccc----cccccceeecCCCC----CCcee
Confidence 0125667999999998776653 2356776432111112211 12333322 23312 23333
Q ss_pred EEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHH
Q 013082 313 TLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVL 392 (450)
Q Consensus 313 ~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~ 392 (450)
++..-..-|+..- ..+++....++.+. .. .-+ .||.....-....
T Consensus 285 i~E~Khf~~~~~~-~~Tvi~~Eyp~~~~------------------------~g---------deP-YYPin~~~n~~l~ 329 (374)
T COG0562 285 ITEFKHFTPERDH-DQTVISREYPREAE------------------------DG---------DEP-YYPINTEENRALL 329 (374)
T ss_pred EEeeeccCCcccC-CCcEEEEecCcccc------------------------CC---------CcC-cccCCchHHHHHH
Confidence 3322111121110 12333322211100 00 011 1444333333444
Q ss_pred HHHHHHHhhCCCeEEecCC--cCCCChHHHHHHHHHHHHHHHH
Q 013082 393 EAIEKMETNLPGFFYAGNH--RGGLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 393 ~~~~~~~~~~~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~~ 433 (450)
..++.+.....+++|.|.- +....|+.||.++...|+.++.
T Consensus 330 ~kY~~lA~~e~nv~f~GRLgtYrY~DMd~~I~~AL~~~~~~l~ 372 (374)
T COG0562 330 AKYRALAKKEENVTFGGRLGTYRYLDMDMAIAEALKTADNLLA 372 (374)
T ss_pred HHHHHHHhhccceEEeeeeeeeEeccHHHHHHHHHHHHHHHhh
Confidence 5555556667799999987 4567899999999999999876
No 35
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.49 E-value=4.7e-06 Score=79.98 Aligned_cols=241 Identities=16% Similarity=0.133 Sum_probs=130.9
Q ss_pred CCccceEeccchHHHHHhccc---c------------CCccCCC--eEEEecCCCccccceecCEEEEcC-Chhhhhhhh
Q 013082 194 RQRGSFSFLGGMQVLSLSYSH---D------------GRSALEN--WSLCSSNQEKQSLGLSFDAVIMTA-PLCNVKEMK 255 (450)
Q Consensus 194 ~~~~~~~~~gG~~~l~~~l~~---~------------~~~~~~~--~~v~~~~g~~~~~~~~ad~VI~t~-P~~~~~~ll 255 (450)
++.+..|+.|||+.+..+++. + +.-.+++ +-|.+.||. .+.+..||++. |-...-+|+
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~----ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT----EVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc----EEEeeeeecCCchHHHHHHhC
Confidence 344556999999999988752 0 0111223 457788885 78889999985 555555786
Q ss_pred hccC-CCCCcCCCCCCCCC-CCeEE----EEEEecCC-CCCCCCCCeeEEe-cCCCC---------C----CCCceEEEE
Q 013082 256 ITKG-GNLFPLDFLPEVIY-MPLSV----IITTFKKE-NVRRPLEGFGVLV-PSKEQ---------Q----NGLKTLGTL 314 (450)
Q Consensus 256 ~~~~-~~p~~~~~l~~~~y-~~~~~----v~l~~~~~-~~~~~~~~~g~~~-~~~~~---------~----~~~~~~~~~ 314 (450)
++ ..|+.. .++++.| +++.+ ..++.+.. ..|-+..++.+.+ +++.+ . .+.+.+...
T Consensus 328 --p~e~LPeef-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~s 404 (561)
T KOG4254|consen 328 --PGEALPEEF-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELS 404 (561)
T ss_pred --CCccCCchh-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEe
Confidence 43 345432 3344444 22221 34443221 1111112232332 22210 0 123455555
Q ss_pred eccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCC-------HHHHHHHHHHHHHHHh-CCCCCCceEEee------cc---
Q 013082 315 FSSMMFPDRVPKDLYLYTTFVGGSRNKELAKAS-------TDELKQIVTSDLRQLL-GVEGDPAFVNHF------FW--- 377 (450)
Q Consensus 315 ~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~-------~eel~~~~~~~L~~~~-~~~~~p~~~~v~------~w--- 377 (450)
+.|..-|.-+|+|+++|..+..... ..|.+.+ .++..+++.+.+.+++ |+....+.+.+- |.
T Consensus 405 iPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~ 483 (561)
T KOG4254|consen 405 IPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGR 483 (561)
T ss_pred cccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcC
Confidence 6666666678889998887764332 2343322 4788899999999876 665443322221 22
Q ss_pred -CCCCCCCCCCHHHH-H----HHHHHHHhhCCCeEEecCC-cCCCChHHHHHHHHHHHHHHHHHhcccchhhhh
Q 013082 378 -SKAFPLYGRDYDSV-L----EAIEKMETNLPGFFYAGNH-RGGLSVGKSIASGCKAAELVISYLEKSSDDKML 444 (450)
Q Consensus 378 -~~a~p~~~~g~~~~-~----~~~~~~~~~~~~l~~aG~~-~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~~~ 444 (450)
.+++--.+.+.... + ..+-+..+++++||+||+. ++|.++-++- |..+|...+.+.+..++-+.|
T Consensus 484 ~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~~~~~~~~l~nl 555 (561)
T KOG4254|consen 484 PGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAILDRKLYSDLKNL 555 (561)
T ss_pred CCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHHhhhhhhHHHhhhh
Confidence 11111111111110 0 0011235789999999999 4676676655 888888877766655554444
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.28 E-value=5.6e-07 Score=65.03 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=39.4
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc--ChHHHHHHHHHc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDL 44 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~--~~~~~~~l~~~l 44 (450)
+|||+++++||++++...+|+.+|.|+|.|.. .++++.+++++|
T Consensus 23 ~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 23 TVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 58999999999999999999999999999986 358999999986
No 37
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.77 E-value=0.00035 Score=69.28 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=116.4
Q ss_pred eeccCCCCCeeEEEEe---------------------cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceE
Q 013082 2 VFEADERAGGKLRSIS---------------------KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (450)
Q Consensus 2 vlEa~~rvGGr~~t~~---------------------~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (450)
.+++++..||...|+. ...|.+|+-|+.++.+. .+.++|-.-|+..++.|..- ...|
T Consensus 32 hiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~g-~LV~lLi~S~V~rYLEFk~V-~~~~ 109 (438)
T PF00996_consen 32 HIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYARG-PLVKLLISSGVTRYLEFKAV-DGSY 109 (438)
T ss_dssp EE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETTS-HHHHHHHHCTGGGGSEEEEE-SEEE
T ss_pred ecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhccC-HHHHHHHhCCcccceEEEEc-ceeE
Confidence 4688899999988874 12578999999888774 68888888999988877543 3578
Q ss_pred EEECCEEeecCCChhHhhhcccCChhHHHHHhcc---ccccccCCc-ccccCCCcCCcHHHHHHHhhc--HHHHHHHhhh
Q 013082 61 VVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILE---PFLWKKSDS-AKVSAEDAKESVGGFFQRHFG--REVVDFLIDP 134 (450)
Q Consensus 61 ~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~~--~~~~~~l~~p 134 (450)
+|.+|+++++|.+-.+.++.+.++..+|-++..- .......+. ........+.++.+++++ |+ +.+.+.+...
T Consensus 110 v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~-f~L~~~~~~~i~ha 188 (438)
T PF00996_consen 110 VYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKK-FGLSENLIDFIGHA 188 (438)
T ss_dssp EEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHH-TTS-HHHHHHHHHH
T ss_pred EEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhccccccccHHHHHHh-cCCCHHHHHHHHHh
Confidence 8999999999999999999899998888654321 111111000 000012357899999975 44 4444444332
Q ss_pred hhcccccCCcc-cchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcc
Q 013082 135 FVAGTSAGDPE-SLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYS 213 (450)
Q Consensus 135 ~~~~~~~~~~~-~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 213 (450)
+ +++..+.. +.++...+.++..+....|. ..+....++..|.+.|++++.
T Consensus 189 i--aL~~~~~~~~~p~~~~l~ri~~yl~Slgr---------------------------yG~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 189 I--ALSLDDSYLTEPAREGLERIKLYLSSLGR---------------------------YGKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp T--S-SSSSGGGGSBSHHHHHHHHHHHHHHCC---------------------------CSSSSEEEETT-TTHHHHHHH
T ss_pred h--hhccCcccccccHHHHHHHHHHHHHHHhc---------------------------cCCCCEEEEccCCccHHHHHH
Confidence 2 22332221 22334445444433222110 122345588899999998874
Q ss_pred c----c------CC------ccCCCeEEEe-cCCCccccceecCEEEEc
Q 013082 214 H----D------GR------SALENWSLCS-SNQEKQSLGLSFDAVIMT 245 (450)
Q Consensus 214 ~----~------~~------~~~~~~~v~~-~~g~~~~~~~~ad~VI~t 245 (450)
. . +. .++++..+.+ .+| +++.|+.||..
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~g----e~v~~k~vI~d 284 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEG----EVVKAKKVIGD 284 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETT----EEEEESEEEEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCC----EEEEcCEEEEC
Confidence 2 1 11 1233433222 344 48999999964
No 38
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.66 E-value=0.00016 Score=73.50 Aligned_cols=134 Identities=10% Similarity=0.086 Sum_probs=80.8
Q ss_pred CeeccCCCCCeeEEEEe--cCcEEEccCCCccccChHHHHHHHHHcCCC--------ccccccC-----CCCceEEEECC
Q 013082 1 MVFEADERAGGKLRSIS--KDGLIWDEGANTMTESEMEVKGLLDDLGIR--------EKQQFPI-----SQYKRYVVRNG 65 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~--~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~--------~~~~~~~-----~~~~~~~~~~G 65 (450)
+|||+++++||++.++. .+|+.++.|++ +...++++.+|++++.-. ++..... ....++++.+|
T Consensus 53 tIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g 131 (576)
T PRK13977 53 TILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRG 131 (576)
T ss_pred EEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCC
Confidence 58999999999999865 68999998877 567789999999888421 1111111 11123222233
Q ss_pred EEeecCCChhHhhhcccCChhHHH--HHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCC
Q 013082 66 VPFLIPTNPIALLTSNFLSAQSKF--QIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGD 143 (450)
Q Consensus 66 ~~~~~p~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~ 143 (450)
..+.. ..+++..|. .++...+. .. ..+++.+++||+.+.|-+.....++++++ +-.
T Consensus 132 ~~~d~----------~~~~L~~k~r~~Ll~l~l~-~e-------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~F----aF~ 189 (576)
T PRK13977 132 EILDT----------DKFGLSKKDRKELLKLLLT-PE-------EKLDDKTIEDWFSPEFFETNFWYYWRTMF----AFE 189 (576)
T ss_pred CEEEC----------cCCCCCHHHHHHHHHHhcc-CH-------HHhCCcCHHHHHhhcCchhHHHHHHHHHH----CCc
Confidence 22211 122222333 33332222 11 36789999999999877666667777763 333
Q ss_pred cccchhhccchhHHH
Q 013082 144 PESLVMRHSFPELWN 158 (450)
Q Consensus 144 ~~~~Sa~~~~~~l~~ 158 (450)
...||..+...+.+
T Consensus 190 -~whSA~E~rry~~r 203 (576)
T PRK13977 190 -KWHSALEMRRYMHR 203 (576)
T ss_pred -hhhHHHHHHHHHHH
Confidence 67787765544443
No 39
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.34 E-value=0.02 Score=55.84 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=77.4
Q ss_pred CcCCcHHHHHHH-hhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCc
Q 013082 110 DAKESVGGFFQR-HFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGS 188 (450)
Q Consensus 110 ~~~~s~~~~l~~-~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~ 188 (450)
.-..|.++||++ .+++...+.++.+.++.-|+.+. ++++-. |+....
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~-----------------G~vSla-------------- 114 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFA-----------------GLVSLA-------------- 114 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhh-----------------hheeee--------------
Confidence 356789999977 46788999999999999999763 454321 111110
Q ss_pred hhhhcCCccceEeccchHHHHHhcccc-----------CC--ccCCC---eEEEecCCCccccceecCEEEEcCChhhhh
Q 013082 189 SEKKRRQRGSFSFLGGMQVLSLSYSHD-----------GR--SALEN---WSLCSSNQEKQSLGLSFDAVIMTAPLCNVK 252 (450)
Q Consensus 189 ~~~~~~~~~~~~~~gG~~~l~~~l~~~-----------~~--~~~~~---~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~ 252 (450)
-...+.+.++||..++.+.|... .. +.+++ +.|++.++. +...-.+|.||+|+|.....
T Consensus 115 ----~a~~gl~sV~GGN~qI~~~ll~~S~A~vl~~~Vt~I~~~~~~~~~~y~v~~~~~~-~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 115 ----GATGGLWSVEGGNWQIFEGLLEASGANVLNTTVTSITRRSSDGYSLYEVTYKSSS-GTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred ----eccCCceEecCCHHHHHHHHHHHccCcEecceeEEEEeccCCCceeEEEEEecCC-CCccccCCEEEECCCccccc
Confidence 01346789999999998877421 11 11222 456655432 22345689999999996555
Q ss_pred hhhhccCCCCCcCCCCCCCCCCCeEE
Q 013082 253 EMKITKGGNLFPLDFLPEVIYMPLSV 278 (450)
Q Consensus 253 ~ll~~~~~~p~~~~~l~~~~y~~~~~ 278 (450)
..+.+....|.. + +-..+|..+.+
T Consensus 190 snI~~~~~~~~i-~-~~~~~Y~~l~v 213 (368)
T PF07156_consen 190 SNITFINFDPPI-D-IPPRPYVHLHV 213 (368)
T ss_pred CCccccCCCCCC-c-cCCCCcEEEEE
Confidence 322123333322 1 12346765544
No 40
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.09 Score=50.61 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred eeccCCCCCeeEEEEec---------------------CcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceE
Q 013082 2 VFEADERAGGKLRSISK---------------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (450)
Q Consensus 2 vlEa~~rvGGr~~t~~~---------------------~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (450)
.+++++..||-..|.+. ..+-+|+=|..++++ ..+..++-+-|+...+.+..- ...|
T Consensus 32 hiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn-~~Lvk~Li~T~V~~YL~fk~i-~gsf 109 (440)
T KOG1439|consen 32 HIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMAN-GELVKILIHTGVTRYLEFKSI-SGSF 109 (440)
T ss_pred EEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhcc-chHHHHHHHhchhhheEEEee-cceE
Confidence 46777788887776521 135689999977766 457778888889888776433 3578
Q ss_pred EEECCEEeecCCChhHhhhcccCChhHHHHHh
Q 013082 61 VVRNGVPFLIPTNPIALLTSNFLSAQSKFQII 92 (450)
Q Consensus 61 ~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~ 92 (450)
+|.+|+++++|.+..+.+++++++..+|-++.
T Consensus 110 v~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 110 VYKKGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred EEECCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 89999999999999999998899888876543
No 41
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.096 Score=49.90 Aligned_cols=178 Identities=16% Similarity=0.210 Sum_probs=111.1
Q ss_pred eeccCCCCCeeEEEEec--------------------CcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEE
Q 013082 2 VFEADERAGGKLRSISK--------------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYV 61 (450)
Q Consensus 2 vlEa~~rvGGr~~t~~~--------------------~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~ 61 (450)
+++++|..|+-..|.+. ..+-+|+-+..++++ ..+..++-+-|+...+.+..- ...|+
T Consensus 34 hiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~-s~l~~iLi~t~v~~YLefk~i-~~~~~ 111 (434)
T COG5044 34 HIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFAN-SELLKILIETGVTEYLEFKQI-SGSFL 111 (434)
T ss_pred EEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhccc-chHHHHHHHhChHhheeeeec-cccEE
Confidence 46777777777776521 135689999988766 568888888999888776433 35678
Q ss_pred EECCEEeecCCChhHhhhcccCChhHHHHHhcc--cc-ccccCCcccccCCCcCCcHHHHHHHhhcH--HHHHHHhhhhh
Q 013082 62 VRNGVPFLIPTNPIALLTSNFLSAQSKFQIILE--PF-LWKKSDSAKVSAEDAKESVGGFFQRHFGR--EVVDFLIDPFV 136 (450)
Q Consensus 62 ~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~s~~~~l~~~~~~--~~~~~l~~p~~ 136 (450)
+.+|+++++|.+-.+.+.++.++..+|-++.+- ++ .+.. +....-+...+.++.+++.+.|+- +..+.+...++
T Consensus 112 ~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~ 190 (434)
T COG5044 112 YRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIA 190 (434)
T ss_pred ecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhh
Confidence 889999999999999988888888777554321 11 1111 100000233456788888887763 33433333332
Q ss_pred cccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcc
Q 013082 137 AGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYS 213 (450)
Q Consensus 137 ~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 213 (450)
- +. + -+..++-++.++.++.+.++.- ......+++-|.+.|++.++
T Consensus 191 l--~l-d-l~~p~re~~erIl~Y~~Sf~~y---------------------------g~~pyLyp~YGl~El~QGFa 236 (434)
T COG5044 191 L--SL-D-LDIPAREALERILRYMRSFGDY---------------------------GKSPYLYPRYGLGELSQGFA 236 (434)
T ss_pred h--hc-c-ccCCchHHHHHHHHHHHhhccc---------------------------CCCcceeeccCchhhhHHHH
Confidence 2 11 1 4556666677766655543321 12223478888999998775
No 42
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.23 E-value=3.7 Score=40.47 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc------CCCC
Q 013082 343 LAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR------GGLS 416 (450)
Q Consensus 343 ~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~------~g~~ 416 (450)
+...+++++.+.+.+.+...++.. ....+...+|.. ... . +.+. .+++.++||.. .|-|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~l~---~~~-~---~~~~--~~rv~LiGDAAH~~~P~~GqG 299 (388)
T PRK07494 235 LLALSDAALSAAIEERMQSMLGKL------TLEPGRQAWPLS---GQV-A---HRFA--AGRTALVGEAAHVFPPIGAQG 299 (388)
T ss_pred HHcCCHHHHHHHHHHHHhhhcCCe------EEccCCcEeech---HHH-H---Hhhc--cCceEEEEhhhhcCCchhhcc
Confidence 345677888777777666665421 111122223322 111 0 1121 26899999982 4678
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013082 417 VGKSIASGCKAAELVIS 433 (450)
Q Consensus 417 ~~~ai~SG~~aA~~i~~ 433 (450)
++-+++.+...|+.+..
T Consensus 300 ~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 300 LNLGLRDVATLVEIVED 316 (388)
T ss_pred cchhHHHHHHHHHHHHh
Confidence 99999999999988865
No 43
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=88.14 E-value=12 Score=36.73 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|++.+..+|+.+....
T Consensus 276 ~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 314 (382)
T TIGR01984 276 PRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR 314 (382)
T ss_pred CCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence 5899999993 56789999999999998886543
No 44
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=84.84 E-value=18 Score=35.74 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=27.3
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++.++||+. .|-|++-|++.+...|+.+.+.++
T Consensus 282 ~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~ 321 (392)
T PRK08773 282 GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHA 321 (392)
T ss_pred CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHh
Confidence 5899999993 466789999999998888876543
No 45
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=82.82 E-value=21 Score=35.46 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|++.+...|+.+....
T Consensus 282 ~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~ 320 (405)
T PRK08850 282 ERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALW 320 (405)
T ss_pred CcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 5899999993 46789999999999998886644
No 46
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=81.02 E-value=1.5 Score=43.00 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=29.6
Q ss_pred hCCCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
..|||||||+-+ .|+.++-|+.||+.|++.+.+.+
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999873 56779999999999999887654
No 47
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=80.75 E-value=50 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHH
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++.+.||.. .|-|++-|++.|..+|+.+...
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~ 317 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGR 317 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHh
Confidence 5899999993 4678999999999999888654
No 48
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=80.56 E-value=46 Score=32.47 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++.++||+. .|.|+.-|++.|..+|+.+...+.
T Consensus 276 ~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~ 315 (385)
T TIGR01988 276 PRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARR 315 (385)
T ss_pred CceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHh
Confidence 5899999993 467899999999999999876553
No 49
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=79.67 E-value=2.1 Score=39.67 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=30.4
Q ss_pred hhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+-+||||+||... -|+-.-+-+.||++||+.|++.|+.
T Consensus 211 ~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 211 EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 3479999999883 2454577788999999999998864
No 50
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=79.41 E-value=54 Score=32.48 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.+.||+. .|-|++-|++.|..+|+.+....
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~ 332 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAH 332 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHH
Confidence 6899999993 56789999999999999987654
No 51
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=78.88 E-value=2.1 Score=38.26 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=30.9
Q ss_pred HhhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 399 ETNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.+-+||||+||... -|+-.-+-+.||++||+.|++.|+.
T Consensus 215 ~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 215 GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 44579999999883 2454577788999999999998864
No 52
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=78.81 E-value=2.4 Score=39.30 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=29.3
Q ss_pred hhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+-+||||+||... -|+..-+-+.||++||+.|++.++
T Consensus 210 ~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 210 EVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 4479999999884 245456777899999999998763
No 53
>PRK09126 hypothetical protein; Provisional
Probab=78.54 E-value=59 Score=31.91 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|+++|..+|+.+...+
T Consensus 280 ~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~ 318 (392)
T PRK09126 280 KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAA 318 (392)
T ss_pred cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 6899999993 46789999999999999887755
No 54
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=78.45 E-value=51 Score=32.42 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-+++.+..+|+.+.+..
T Consensus 281 ~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 319 (391)
T PRK08020 281 PGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNAR 319 (391)
T ss_pred CcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5899999993 46789999999999988887543
No 55
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=75.78 E-value=14 Score=32.71 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=62.8
Q ss_pred HHhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHH
Q 013082 130 FLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLS 209 (450)
Q Consensus 130 ~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~ 209 (450)
+|+.++..+-||.+|+++++..+ .++- ...+ ....++ ...-+..+++|+..+.
T Consensus 1 k~f~~YT~KQWg~~p~eL~~~v~-~RvP---vr~~-----~d~~YF------------------~d~yQgiP~~GYT~~f 53 (204)
T PF03275_consen 1 KFFKGYTKKQWGVDPEELDASVI-KRVP---VRFS-----YDDRYF------------------NDKYQGIPKDGYTKMF 53 (204)
T ss_dssp HHTHHHHHHHHTSSGGGSBCCCC-SCS----BBSS-----S--BS--------------------SSEEEEETTHHHHHH
T ss_pred CccCccCHHHcCCChHHCCHHHh-cCCc---eeeC-----CCCccc------------------cChhhhCchhCHHHHH
Confidence 47888999999999999998443 2210 0000 000000 1112347899999999
Q ss_pred HhccccCCccCCCeEEEecCCCccc----cceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecC
Q 013082 210 LSYSHDGRSALENWSLCSSNQEKQS----LGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKK 285 (450)
Q Consensus 210 ~~l~~~~~~~~~~~~v~~~~g~~~~----~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~ 285 (450)
+.+-. ..++.|.++..-... ....+|.||.|.|++.+-.-. ...|+|.+.--....++.
T Consensus 54 e~mL~-----h~~I~v~l~td~~~~~~~~~~~~~~~viyTG~iDe~F~y~------------~G~L~YRsL~F~~~~l~~ 116 (204)
T PF03275_consen 54 ENMLD-----HPNIEVRLNTDFFDIIEFGGEPYADKVIYTGPIDEYFDYC------------FGELPYRSLRFEFETLDQ 116 (204)
T ss_dssp HHHC------STTEEEECS--GGGCHHHHCCCTEEEEEE-S-HHHHTTTT------------TS---EEEEEEEEEEESS
T ss_pred HHHhC-----CCceEEEcCCCHHHhhcccccccCCeEEEeCCHHHHhCcC------------CCCCceeEEEEEEEEcCC
Confidence 87732 234555543220000 135689999999999877763 336789887666666665
Q ss_pred CC
Q 013082 286 EN 287 (450)
Q Consensus 286 ~~ 287 (450)
..
T Consensus 117 ~~ 118 (204)
T PF03275_consen 117 EN 118 (204)
T ss_dssp S-
T ss_pred CC
Confidence 53
No 56
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.28 E-value=86 Score=30.73 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|+++|..+|+.+...+
T Consensus 282 grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 320 (395)
T PRK05732 282 HRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQAL 320 (395)
T ss_pred CcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHH
Confidence 5899999992 56789999999999998886544
No 57
>PLN02661 Putative thiazole synthesis
Probab=70.62 E-value=5 Score=38.94 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=31.3
Q ss_pred HhhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 399 ETNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.+-+||||++|... -|+..-+-+.||++||+.|++.|+.
T Consensus 283 ~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 283 REVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 34579999999884 2454577788999999999999975
No 58
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.62 E-value=6.1 Score=42.17 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=32.8
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||...|.. +..|+..|+.||..|.+.|..
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 46689999999987765 589999999999999988864
No 59
>PRK12831 putative oxidoreductase; Provisional
Probab=67.84 E-value=7.3 Score=39.62 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=32.1
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
++.||||.+||...|.. +..|+..|+.||..|.+.|..
T Consensus 424 Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 424 TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 45689999999976654 689999999999999988753
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=65.68 E-value=6.2 Score=38.57 Aligned_cols=36 Identities=31% Similarity=0.596 Sum_probs=29.7
Q ss_pred hhCCCeEEecCC------cCCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNH------RGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~------~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
...|||||||+- +.|+.+.-|+.||..|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 457899999965 356778999999999999887654
No 61
>PRK13984 putative oxidoreductase; Provisional
Probab=64.70 E-value=7.2 Score=41.16 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.3
Q ss_pred hhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
++.++||.+||...+..+-.|+..|+.||..|.+.|.
T Consensus 566 Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999998777777899999999999998874
No 62
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=64.26 E-value=1.6e+02 Score=29.59 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=27.6
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++.++||+. .|-|++-+++.+...|+.+....+
T Consensus 333 ~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~ 372 (437)
T TIGR01989 333 KRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVS 372 (437)
T ss_pred CCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5899999983 466789999999999988876553
No 63
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.25 E-value=8.8 Score=38.85 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=30.1
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~ 435 (450)
+..+|||.+||...+.. +..|+..|+.||..|.+.|
T Consensus 413 Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 413 TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 45689999999986654 6899999999999997654
No 64
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.12 E-value=8.7 Score=40.86 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.5
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..++||.+||-..|.. +..|+..|+.||..|...|..
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 46689999999987765 589999999999999988754
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=62.37 E-value=11 Score=38.51 Aligned_cols=38 Identities=39% Similarity=0.454 Sum_probs=32.1
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||...+. .+..|+..|+.||..|.+.+..
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4668999999998655 4689999999999999988753
No 66
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=61.19 E-value=1.7e+02 Score=28.68 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=23.4
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHH
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~ 432 (450)
+++.+.||+. .|-|++-|++.+...++.+.
T Consensus 279 grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~ 314 (384)
T PRK08849 279 NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETE 314 (384)
T ss_pred CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHH
Confidence 5899999993 45678888888887776664
No 67
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=60.43 E-value=11 Score=38.36 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=32.4
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..++||.+||...+. .+..|+..|..||..|.+.+...
T Consensus 415 Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 415 TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999997654 46889999999999999888654
No 68
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=60.18 E-value=1.8e+02 Score=28.67 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHH
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++.++||+. .|-|++-|++.+...|+.+...
T Consensus 285 ~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~ 322 (405)
T PRK05714 285 PGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHA 322 (405)
T ss_pred CCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHH
Confidence 5899999993 4667899999999988887653
No 69
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=60.04 E-value=14 Score=36.68 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=30.7
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|+.++||+. .|.|+.-|+.||+.||+.|.+.+..
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~ 309 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG 309 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999993 5788999999999999999987654
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=59.35 E-value=6.8 Score=39.04 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=23.5
Q ss_pred CCCeEEecCCc------CCCChHHHHHHHHHHHH
Q 013082 402 LPGFFYAGNHR------GGLSVGKSIASGCKAAE 429 (450)
Q Consensus 402 ~~~l~~aG~~~------~g~~~~~ai~SG~~aA~ 429 (450)
.|||||||+-+ .|+.++-|+.||+.|++
T Consensus 375 ~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 375 VPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp STTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 68999999874 56779999999999986
No 71
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=57.82 E-value=12 Score=37.62 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|+.++||+- .+.|+.-|+.||..||+.|.+.++.
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~ 337 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS 337 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999992 3467999999999999999988753
No 72
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=57.11 E-value=15 Score=41.25 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=34.3
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcccc
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
.++.+|||.+||...|.. +..|+..|+.||..|.+.+....
T Consensus 717 ~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 717 STNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356789999999976654 68999999999999999886544
No 73
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=56.14 E-value=17 Score=35.31 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=30.2
Q ss_pred hCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~ 436 (450)
..++||.+||...+.. +..|+..|..||+.|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999875443 78999999999999988874
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=56.12 E-value=15 Score=37.54 Aligned_cols=39 Identities=44% Similarity=0.573 Sum_probs=32.3
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.+..+|||.+||...|.. +..|+..|+.||..|.+.|..
T Consensus 441 ~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 441 STSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred eECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999976544 678999999999999988854
No 75
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.39 E-value=15 Score=40.00 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=32.2
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||-..|.. +..|+..|+.||..|.+.|..
T Consensus 713 Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 713 SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999986654 689999999999999988753
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.53 E-value=16 Score=38.27 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=32.1
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||...|.. +..|+..|+.||..|.+.+..
T Consensus 407 ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 407 TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 45689999999976554 689999999999999888854
No 77
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=53.24 E-value=14 Score=37.27 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=60.4
Q ss_pred CeeccCCCCCeeEEEEe--cCcEEEccCCCccccChHHHHHHHHHcCC--------Ccccc-----ccCCCCceEEEECC
Q 013082 1 MVFEADERAGGKLRSIS--KDGLIWDEGANTMTESEMEVKGLLDDLGI--------REKQQ-----FPISQYKRYVVRNG 65 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~--~~g~~~D~G~~~~~~~~~~~~~l~~~lGl--------~~~~~-----~~~~~~~~~~~~~G 65 (450)
+|||+.+..||-+-+.. ..|+.+=-|.+ +-.++..+.+|++.+=- .|++. .|.....|.+..+|
T Consensus 33 hIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G 111 (500)
T PF06100_consen 33 HILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRG 111 (500)
T ss_pred EEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCC
Confidence 58999999999998764 45776655544 45567888888877631 11111 12234456555455
Q ss_pred EEeecCCChhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHh
Q 013082 66 VPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH 122 (450)
Q Consensus 66 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 122 (450)
+......+ --|+...++.++...+. +. ..+.+.+++|||...
T Consensus 112 ~~~~~~~~-------~~Ls~k~r~eL~kL~l~-~E-------~~L~~~~I~d~F~~~ 153 (500)
T PF06100_consen 112 QIVDTDSK-------FGLSEKDRMELIKLLLT-PE-------EDLGDKRIEDWFSES 153 (500)
T ss_pred ccccccCc-------CCCCHHHHHHHHHHhcC-CH-------HHhCcccHHHhcchh
Confidence 53221111 12444444444443332 11 357889999998764
No 78
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=52.49 E-value=20 Score=36.44 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=31.0
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~ 436 (450)
+..++||.+||...+.. +..|+..|+.||..|...|.
T Consensus 429 T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999986654 58899999999999988764
No 79
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=52.10 E-value=23 Score=35.23 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=30.2
Q ss_pred CCeEEecCC------cCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNH------RGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~------~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|+.++||+ +.|.||.-|+.||..||+.|.+.+..
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 689999998 26778999999999999999887643
No 80
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=52.00 E-value=14 Score=34.61 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=28.3
Q ss_pred hCCCeEEecCCcC--CCChHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHRG--GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~~--g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
..||||.+||... ...+..|+..|..||..|.+.+
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 4689999999864 2347899999999999987653
No 81
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.89 E-value=18 Score=40.36 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=35.4
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcccchhh
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEKSSDDK 442 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~~~~~~ 442 (450)
++.+|||.+||...|.+ +-.|+..|+.||..|...|...-++.
T Consensus 590 Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~~~~~ 633 (944)
T PRK12779 590 TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFTPAEI 633 (944)
T ss_pred cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 46689999999987764 68999999999999998887654443
No 82
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=51.72 E-value=2.5e+02 Score=27.63 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=82.8
Q ss_pred cCCCeEEEec-CCCccccceecCEEEEcCC-hhhhhhhhhccCCCCCcCCCCCCCCCCCe-EEEEEEecCCCCCCCCCCe
Q 013082 219 ALENWSLCSS-NQEKQSLGLSFDAVIMTAP-LCNVKEMKITKGGNLFPLDFLPEVIYMPL-SVIITTFKKENVRRPLEGF 295 (450)
Q Consensus 219 ~~~~~~v~~~-~g~~~~~~~~ad~VI~t~P-~~~~~~ll~~~~~~p~~~~~l~~~~y~~~-~~v~l~~~~~~~~~~~~~~ 295 (450)
.++.+.++++ +|+ +++||.||-|-- -+.+++.+ . ........|... ..+.+....+ .....+
T Consensus 134 ~~~~v~v~l~~dG~----~~~a~llVgADG~~S~vR~~~--~------~~~~~~~~y~~~~l~~~~~~~~~---~~~~~~ 198 (387)
T COG0654 134 DGDGVTVTLSFDGE----TLDADLLVGADGANSAVRRAA--G------IAEFSGRDYGQTALVANVEPEEP---HEGRAG 198 (387)
T ss_pred cCCceEEEEcCCCc----EEecCEEEECCCCchHHHHhc--C------CCCccCCCCCceEEEEEeecCCC---CCCeEE
Confidence 3466778877 774 899999999966 34555554 2 111223345332 2233333211 111112
Q ss_pred eEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEee
Q 013082 296 GVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHF 375 (450)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~ 375 (450)
.++.+.. ..++ + |- ++....+.++........+..+++++. ...+.+.++...........
T Consensus 199 ~~~~~~~-------~~~~-~-----p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~ 259 (387)
T COG0654 199 ERFTHAG-------PFAL-L-----PL--PDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERDPLGRVTLV 259 (387)
T ss_pred EEecCCC-------ceEE-E-----ec--CCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcccccceEEEc
Confidence 2222211 1111 1 11 112233333333223333445566555 45555555443111123333
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 376 FWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 376 ~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
.+...+|.- .. .. +.+.. +++.++||+. .|-|++=+++-+...|+.|.+...
T Consensus 260 ~~~~~~pl~---~~-~a---~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 260 SSRSAFPLS---LR-VA---ERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred ccccccccc---ch-hh---hheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 444444421 11 11 11112 6899999993 455677777777777777766554
No 83
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=51.31 E-value=2.5e+02 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.2
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|+++|..+|+.+...+
T Consensus 280 grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~ 318 (403)
T PRK07333 280 PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAA 318 (403)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 5899999993 46778999999999998887654
No 84
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=50.93 E-value=16 Score=30.76 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=21.3
Q ss_pred ccCCCeEEEecCCCccccceecCEEEEcCC
Q 013082 218 SALENWSLCSSNQEKQSLGLSFDAVIMTAP 247 (450)
Q Consensus 218 ~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P 247 (450)
+.++++.|.+.+|. .+.||+||+|+-
T Consensus 129 ~~~~~~~v~~~~g~----~~~~d~VvLa~G 154 (156)
T PF13454_consen 129 RDDDGYRVVTADGQ----SIRADAVVLATG 154 (156)
T ss_pred EcCCcEEEEECCCC----EEEeCEEEECCC
Confidence 34577888888885 889999999974
No 85
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=50.92 E-value=1.8e+02 Score=28.39 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.6
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHH
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELV 431 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i 431 (450)
+++.+.||+. .|-|++-+++.+...|+.+
T Consensus 273 grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 273 NRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred CCEEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence 6899999993 4567888999888888765
No 86
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=48.28 E-value=24 Score=34.85 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.9
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
..+||||||+-..-.|-+.|..+|..|+..+...++.
T Consensus 354 ~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 354 KIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp SSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3689999999975567899999999999988876654
No 87
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=48.23 E-value=24 Score=37.69 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=32.1
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||...+.. +..|+..|+.||..|.+.+..
T Consensus 464 Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 464 TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999976654 589999999999999988854
No 88
>PRK10015 oxidoreductase; Provisional
Probab=47.96 E-value=21 Score=35.82 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCeEEecCC---c-----CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNH---R-----GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~---~-----~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+|+.++||+ + .+.||.-|+.||+.||+.|.+.+.
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~ 336 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKE 336 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHh
Confidence 589999999 2 356799999999999999998775
No 89
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=47.71 E-value=21 Score=39.89 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=33.4
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHHhcccchh
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISYLEKSSDD 441 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~~~~~~~~ 441 (450)
+..||||.+||...|+ .+..|+..|+.||+.|........++
T Consensus 805 Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~~~~ 847 (1019)
T PRK09853 805 TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIRSHQ 847 (1019)
T ss_pred cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 4568999999997655 47999999999999999877644433
No 90
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=47.02 E-value=11 Score=37.51 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.7
Q ss_pred hCCCeEEecCCc------CCCChHHHHHHHHHHH
Q 013082 401 NLPGFFYAGNHR------GGLSVGKSIASGCKAA 428 (450)
Q Consensus 401 ~~~~l~~aG~~~------~g~~~~~ai~SG~~aA 428 (450)
..|||||||+-+ .|+.++-|+.||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 358999999773 5677999999999987
No 91
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=47.00 E-value=30 Score=34.12 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCeEEecCC------cCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNH------RGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~------~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+++.++||. +.|.|+.-|+.||..||+.|.+.+..
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 579999998 25778999999999999999987753
No 92
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=44.94 E-value=27 Score=35.41 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCeEEecCC------cCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNH------RGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~------~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|+.++||+ +.|.||.-|+.||..||+.|.+.++.
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 589999998 36778999999999999999987643
No 93
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=44.74 E-value=26 Score=39.15 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=29.9
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~ 435 (450)
+..+|||.+||...|+. +..|+..|+.||..|++..
T Consensus 803 Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 803 TNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 45689999999975554 7999999999999998654
No 94
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=42.81 E-value=32 Score=38.77 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 402 ~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
.++||.|||.....++..|+.+|..||..|...+....
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg~~~ 475 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAGFEG 475 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 57999999988656789999999999999998886633
No 95
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=39.18 E-value=40 Score=33.81 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=28.7
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
..+||||||+-..-.|-..|..+|..|+..+...+.
T Consensus 329 ~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 329 KRPNLFFAGQITGVEGYVESAASGLLAGINAARLAL 364 (436)
T ss_pred CCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999997444567899999999988877654
No 96
>PRK08013 oxidoreductase; Provisional
Probab=36.44 E-value=4.3e+02 Score=26.01 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++.++||+. .|-|++-|++.+...|..+...+
T Consensus 282 grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~ 320 (400)
T PRK08013 282 HRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLH 320 (400)
T ss_pred CcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHH
Confidence 5899999993 46789999999999888876544
No 97
>PRK06185 hypothetical protein; Provisional
Probab=36.03 E-value=1e+02 Score=30.44 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=29.0
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+++.++||+. .|-|++-+++.+..+|+.+.+.+..
T Consensus 284 ~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~ 324 (407)
T PRK06185 284 PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRR 324 (407)
T ss_pred CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhcc
Confidence 5899999983 4678999999999999988876543
No 98
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.34 E-value=41 Score=35.38 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=32.6
Q ss_pred HhhCCCeEEecCCc--------C--CCChHHHHHHHHHHHHHHHHHhcccchh
Q 013082 399 ETNLPGFFYAGNHR--------G--GLSVGKSIASGCKAAELVISYLEKSSDD 441 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~--g~~~~~ai~SG~~aA~~i~~~~~~~~~~ 441 (450)
.+++||||-||+-. . |.++-.|+.+|+.|++.+.+..+-...|
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~~~ 576 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAAAD 576 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 35789999999662 1 3447889999999999998876555444
No 99
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=34.97 E-value=39 Score=34.32 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhCCCeEEecCCc----------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR----------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~----------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++||||-||+-. .|.++-.|+.+|+.|++.+.+..+
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 4789999999652 235688899999999999876543
No 100
>PRK10262 thioredoxin reductase; Provisional
Probab=33.26 E-value=23 Score=33.90 Aligned_cols=41 Identities=34% Similarity=0.487 Sum_probs=31.5
Q ss_pred hhCCCeEEecCCcCC-C-ChHHHHHHHHHHHHHHHHHhcccch
Q 013082 400 TNLPGFFYAGNHRGG-L-SVGKSIASGCKAAELVISYLEKSSD 440 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g-~-~~~~ai~SG~~aA~~i~~~~~~~~~ 440 (450)
++.||||.+||-... . .+-.|+..|..||..|.+.+..-.+
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~~~ 319 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAD 319 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhccc
Confidence 567899999999743 2 2455999999999999988865443
No 101
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=31.91 E-value=45 Score=34.92 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=28.7
Q ss_pred hhCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++||||-||+... |.++-+|+.+|+.|++.+.+..+
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 46899999999742 23577899999999999876543
No 102
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=31.82 E-value=36 Score=29.66 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=18.8
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCCh
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPL 248 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~ 248 (450)
.+++|.|++.++. ++.||+||+|+-.
T Consensus 111 ~~~~w~v~~~~~~----~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 111 DGDGWTVTTRDGR----TIRADRVVLATGH 136 (203)
T ss_dssp ETTTEEEEETTS-----EEEEEEEEE---S
T ss_pred eccEEEEEEEecc----eeeeeeEEEeeec
Confidence 4567999998873 7899999999884
No 103
>PRK11445 putative oxidoreductase; Provisional
Probab=31.74 E-value=57 Score=31.62 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+|+.++||+. .|.|+.-|+.+|..+|+.|.+..
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 5899999992 57789999999999999998654
No 104
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.72 E-value=48 Score=34.64 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCc--------C--CCChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHR--------G--GLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~--g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++||||.||+-. . |.++-.|+.+|+.|++.+.+.
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 5789999999752 1 456899999999999998665
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=30.94 E-value=45 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHH
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELV 431 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i 431 (450)
+|+.+.||+. .|.|++-|+++|..||+.|
T Consensus 261 ~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 261 GNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 6899999982 5778999999999999753
No 106
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.16 E-value=56 Score=34.49 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=28.6
Q ss_pred hhCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+... |.++-+|+..|+.|++.+.+..
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 46899999999731 2457889999999999987654
No 107
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=30.00 E-value=59 Score=32.95 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=29.8
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
.++.|+||-+||...+.. .+-|...|..||+.|..
T Consensus 299 ~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 345789999999986654 49999999999999997
No 108
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=29.16 E-value=40 Score=34.80 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=32.3
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcccc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
+..||||.|||-... ..+.-|+.+|..||..+.+.+.+.+
T Consensus 474 Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 474 TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 467899999999643 2378899999999999988886654
No 109
>PRK06116 glutathione reductase; Validated
Probab=29.14 E-value=54 Score=33.07 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=28.5
Q ss_pred HhhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||...+. ..+.|+..|..||+.|..
T Consensus 292 ~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 292 NTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 35678999999987443 368999999999999975
No 110
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.56 E-value=61 Score=33.71 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=28.6
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-+|+.+|+.|++.+.+..
T Consensus 359 t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 359 TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 5789999999863 23457789999999999987654
No 111
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=28.44 E-value=55 Score=33.73 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=28.8
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+-. .|.++-.|+.+|+.|++.+.+..
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 5789999999852 34567889999999999987653
No 112
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=28.23 E-value=83 Score=33.16 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.4
Q ss_pred CCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 402 ~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
++||||||+-....|.+.|..+|..|+-.+...+.
T Consensus 357 ~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~~~~ 391 (617)
T TIGR00136 357 IQGLFFAGQINGTTGYEEAAAQGLMAGINAALKLQ 391 (617)
T ss_pred CCCeEEccccCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 68999999975445688999999988877765543
No 113
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=28.08 E-value=1.6e+02 Score=30.08 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=29.4
Q ss_pred HhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 399 ETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
.+..+|||+||-...--.+.+++..|..||......+.
T Consensus 508 ~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 508 DSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred cccCCcEEEeecccCCccHHHHHHHhHHHHHHHHHHhh
Confidence 34567999999986444689999999888888766554
No 114
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=27.80 E-value=38 Score=33.49 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhccc
Q 013082 415 LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 415 ~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
-|.|.||.||+.||+.|-+++...
T Consensus 402 KGTHtAMKSGmlAAesif~ai~~~ 425 (621)
T KOG2415|consen 402 KGTHTAMKSGMLAAESIFEAIKGL 425 (621)
T ss_pred ccchhhhhcchhHHHHHHHHHhcC
Confidence 368999999999999999988554
No 115
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=27.73 E-value=65 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=29.1
Q ss_pred HhhCCCeEEecCCc--------C--CCChHHHHHHHHHHHHHHHHHh
Q 013082 399 ETNLPGFFYAGNHR--------G--GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~--g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
.+++||||-||+-. . |.++-.|+.+|+.|++.+.+..
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 35789999999652 1 4457889999999999997654
No 116
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=27.63 E-value=61 Score=32.75 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=28.4
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||...+.. .+-|+..|+.||+.|..
T Consensus 292 ~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 292 NTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred cCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 345789999999875443 68999999999999874
No 117
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.52 E-value=1.8e+02 Score=28.94 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred cEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhcccCChhHHHHHhc------
Q 013082 20 GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIIL------ 93 (450)
Q Consensus 20 g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~------ 93 (450)
-|-+|+-+..++..+ ++.+|+=+-++..+..|..- ...+.+.+|++.++|-+-.+.+...-|...+|-.+..
T Consensus 129 RFniDLvpkilys~g-~lI~lLikS~vsrYaEFK~V-~r~l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~ 206 (547)
T KOG4405|consen 129 RFNIDLVPKILYSAG-ELIQLLIKSNVSRYAEFKNV-DRILAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQ 206 (547)
T ss_pred ccchhhhhHHHhccc-HHHHHHHHhcchhhhhhhcc-chhhcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 477899999887764 67888888888776666432 2345567899999998777777666666666532221
Q ss_pred cccccccCCcccccCCCcCCcHHHHHHH-hhcHHHHHHHhh
Q 013082 94 EPFLWKKSDSAKVSAEDAKESVGGFFQR-HFGREVVDFLID 133 (450)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~~~~~~~~l~~ 133 (450)
++......+ . .....+.+|.+||++ +.++.+-..++.
T Consensus 207 ~y~tEk~~~--~-~~~~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 207 EYLTEKDPD--E-YVEFRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred HhhhccCcH--H-HHHhhcCcHHHHHHhcCCChhhHHHHHH
Confidence 222111110 0 123467899999987 455544444443
No 118
>PRK07121 hypothetical protein; Validated
Probab=27.50 E-value=60 Score=33.24 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
.++||||-||+-. .|.++-.|+.+|+.|++.+.+.
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4689999999752 3566889999999999988653
No 119
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=27.24 E-value=5.7e+02 Score=24.61 Aligned_cols=76 Identities=17% Similarity=0.040 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHH
Q 013082 349 DELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAA 428 (450)
Q Consensus 349 eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA 428 (450)
++..+.+.+.+.++++.... ....|...+| +++...-. +.. .+..+|||++.-+. |.|+--+-..|+..|
T Consensus 285 ~~~~~~l~~~~~~~~P~~~~----~~~~~~g~~~-~t~D~~P~---ig~-~~~~~gl~~~~G~~-g~G~~~ap~~g~~la 354 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVGP----CLRGAACTYT-NTPDEHFI---IDT-LPGHPNVLVASGCS-GHGFKFASVLGEILA 354 (376)
T ss_pred HHHHHHHHHHHHHHCCCCCc----cccceEEecc-cCCCCCce---eec-CCCCCCEEEEeccc-chhhhccHHHHHHHH
Confidence 56778888888888753222 2334544333 33322111 111 12357999887773 456777888899999
Q ss_pred HHHHHH
Q 013082 429 ELVISY 434 (450)
Q Consensus 429 ~~i~~~ 434 (450)
+.|+..
T Consensus 355 ~li~~~ 360 (376)
T PRK11259 355 DLAQDG 360 (376)
T ss_pred HHHhcC
Confidence 988764
No 120
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.11 E-value=59 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.3
Q ss_pred hCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
++||||-||+... |.++-+|+.+|+.|++.+.+..
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999732 2457888999999999887654
No 121
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.10 E-value=67 Score=33.84 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=28.3
Q ss_pred HhhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 399 ETNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 399 ~~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
.+++||||-||+.. .|.++-+|+..|+.|++.+.+..
T Consensus 365 ~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 365 MTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 35789999999964 23457789999999998876543
No 122
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=26.95 E-value=59 Score=37.40 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=31.4
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
.++||||-||+-. .|.++-.|+..|+.|++.+.+.++.+.
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 4789999999852 345578899999999999988765543
No 123
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.81 E-value=73 Score=30.36 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+++.+.||+. .|-|++-||.+|..+|+.|...+...
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~ 332 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGE 332 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCC
Confidence 4899999993 46679999999999999988776533
No 124
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=51 Score=31.41 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=32.7
Q ss_pred HHhhCCCeEEecCCcCCC--ChHHHHHHHHHHHHHHHHHhccc
Q 013082 398 METNLPGFFYAGNHRGGL--SVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 398 ~~~~~~~l~~aG~~~~g~--~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..++.||||-|||-..+. -+-.|+..|..||..+.+.+.+.
T Consensus 261 ~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 261 METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 457789999999997443 37888999999999988877653
No 125
>PLN02852 ferredoxin-NADP+ reductase
Probab=26.59 E-value=52 Score=33.73 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=31.6
Q ss_pred hhCCCeEEecCCcCCCC--hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS--VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~--~~~ai~SG~~aA~~i~~~~~~ 437 (450)
++.+|||.+||-..|+. |-.++..|..+|+.|++++..
T Consensus 384 T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 384 DTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 45689999999976654 688999999999999998753
No 126
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=26.35 E-value=66 Score=32.45 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.8
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||...+.. .+.|+..|..||+.|..
T Consensus 290 ~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 290 RTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred ccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 456789999999975443 58999999999999874
No 127
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=26.10 E-value=62 Score=34.01 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=28.8
Q ss_pred hhCCCeEEecCCc----------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR----------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~----------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++||||-||+-. .|.++-.|+.+|+.|++.+.+.+.
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 5789999999631 244578899999999999976554
No 128
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=26.06 E-value=73 Score=31.96 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=27.6
Q ss_pred hhCCCeEEecCCc----------CCCChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHR----------GGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~----------~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+++||||-||+-. .|.++-.|+..|+.|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4789999999742 1456788999999999988654
No 129
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=25.95 E-value=70 Score=33.64 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+... |.++-+|+..|+.|++.+....
T Consensus 369 t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 369 TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 57899999998631 2457889999999999887654
No 130
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.75 E-value=82 Score=33.08 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+... |.++-+|+.+|+.|++.+....
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 46899999999732 2457889999999999987654
No 131
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=25.70 E-value=66 Score=33.53 Aligned_cols=35 Identities=37% Similarity=0.553 Sum_probs=27.1
Q ss_pred HhhCCCeEEecCCcC-------------CCChHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRG-------------GLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~-------------g~~~~~ai~SG~~aA~~i~~ 433 (450)
.+++||||-||+-.. |.++-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 357899999987631 44578899999999998753
No 132
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.77 E-value=67 Score=33.57 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.0
Q ss_pred hhCCCeEEecCCc--------C--CCChHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHR--------G--GLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~--g~~~~~ai~SG~~aA~~i~~ 433 (450)
+++||||-||+.. . |.++-.|+.+|+.|++.+.+
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 5789999998773 1 34467899999999998864
No 133
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.66 E-value=5.9e+02 Score=24.45 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCCh-HHH
Q 013082 343 LAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFP-LYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSV-GKS 420 (450)
Q Consensus 343 ~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p-~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~-~~a 420 (450)
+..++.+|+.+++.+.|.- .|+. .|.++|| +.+-|.-+++.-.|.+ ..-|.|.+|-+.+.. + +..
T Consensus 110 iag~~k~ei~~RV~elLel-VgL~---------dk~~~yP~qLSGGQKQRVaIARAL-a~~P~iLL~DEaTSA--LDP~T 176 (339)
T COG1135 110 LAGVPKAEIKQRVAELLEL-VGLS---------DKADRYPAQLSGGQKQRVAIARAL-ANNPKILLCDEATSA--LDPET 176 (339)
T ss_pred hcCCCHHHHHHHHHHHHHH-cCCh---------hhhccCchhcCcchhhHHHHHHHH-hcCCCEEEecCcccc--CChHH
Confidence 4457889999999887773 4554 5667787 5677777777644544 344889999999752 3 333
Q ss_pred HHHHHHHHHHHHHHh
Q 013082 421 IASGCKAAELVISYL 435 (450)
Q Consensus 421 i~SG~~aA~~i~~~~ 435 (450)
-.|=...-..|.+.+
T Consensus 177 T~sIL~LL~~In~~l 191 (339)
T COG1135 177 TQSILELLKDINREL 191 (339)
T ss_pred HHHHHHHHHHHHHHc
Confidence 334444444444443
No 134
>PRK12839 hypothetical protein; Provisional
Probab=24.35 E-value=74 Score=33.37 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCc----------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-.|+.+|+.|++.+.+..
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 5789999999742 24567899999999999987543
No 135
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=23.65 E-value=82 Score=32.93 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=28.7
Q ss_pred hhCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+... |.++-+|+.+|+.|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 67899999999631 2457889999999999987654
No 136
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.99 E-value=69 Score=33.44 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=29.5
Q ss_pred hCCCeEEecCCcC-C-CChHHHHHHHHHHHHHHHHHhccc
Q 013082 401 NLPGFFYAGNHRG-G-LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 401 ~~~~l~~aG~~~~-g-~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..|+||.+||-.. + ..+..|+..|..||..|.+.+...
T Consensus 272 s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 272 NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhh
Confidence 4589999999753 2 236789999999999998776543
No 137
>PRK09077 L-aspartate oxidase; Provisional
Probab=22.98 E-value=91 Score=32.40 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=28.7
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-+|+..|+.|++.+....
T Consensus 364 t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 364 TDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 5789999999973 1 2467889999999999987654
No 138
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=22.95 E-value=1e+02 Score=27.59 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=30.9
Q ss_pred HhhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 399 ETNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
.+-.||.+++|..+ -|+..-+-+.||..||++++..+..+
T Consensus 273 revvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~kAaq~aLk~f~~~ 320 (328)
T KOG2960|consen 273 REVVPGMIVAGMEVAELDGANRMGPTFGAMMLSGVKAAQQALKHFAAP 320 (328)
T ss_pred hhccCceEEeeeeeeeccCCcccCcchhhhhhcchhHHHHHHHHhcCc
Confidence 35678999999763 24556677789999999999988544
No 139
>PRK06175 L-aspartate oxidase; Provisional
Probab=22.90 E-value=87 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=28.1
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-.|+..|++|++.+....
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999973 1 2457788999999999986543
No 140
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.67 E-value=87 Score=33.00 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=28.0
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-+|+..|+.|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999963 1 2457889999999999887654
No 141
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.25 E-value=99 Score=32.85 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-+|+..|+.|++.+.+..
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 4689999999863 23467889999999998887653
No 142
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.10 E-value=1e+02 Score=32.24 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.2
Q ss_pred hhCCCeEEecCCc----------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-+|+.+|+.|++.+...+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3689999999862 23457889999999999887654
No 143
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=22.07 E-value=89 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=28.7
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-+|+..|+.|++.+.+..
T Consensus 344 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 344 TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999973 1 3457889999999999987654
No 144
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=21.82 E-value=40 Score=34.84 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=29.9
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||-... ..+..|+..|..||..|.+.+.+
T Consensus 475 Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 475 TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 456899999999643 23678999999999998887643
No 145
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.61 E-value=96 Score=32.69 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=27.9
Q ss_pred hCCCeEEecCCcC----------CCChHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHRG----------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~~----------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
++||||-||+... |.++-+|+..|+.|++.+....
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999732 2467889999999999987653
No 146
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=21.36 E-value=1e+02 Score=32.71 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-+|+..|+.|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 3689999999973 1 2467889999999999987654
No 147
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.27 E-value=1.3e+02 Score=30.06 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=30.0
Q ss_pred hhCCCeEEecCCcC------CCChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRG------GLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~------g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..||||.+||-.. ......|+.+|..+|+.|...+..
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999852 123577999999999999988854
No 148
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.05 E-value=90 Score=31.68 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=28.5
Q ss_pred HhhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||...+. ..+.|+..|..||+.|..
T Consensus 300 ~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 300 RTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred ccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 35678999999997543 368899999999999974
No 149
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=20.84 E-value=1e+02 Score=32.33 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=27.5
Q ss_pred hhCCCeEEecCCc--------C--CCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR--------G--GLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~--g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. . |.++-.|+.+|+.|++.+.+..
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 5789999999552 1 3346789999999999987654
No 150
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=20.55 E-value=1e+02 Score=30.96 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=28.8
Q ss_pred hCCCeEEecCCcC-CCChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRG-GLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~-g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
.+.|||.+||... ..++-.|-..|..+|+.|+..+.
T Consensus 448 ~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 448 SIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eecceEEccccccccchhHHHhhhhHHHHHHHHHHhc
Confidence 4678999999842 13589999999999999988764
No 151
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=20.52 E-value=96 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=28.1
Q ss_pred HhhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||-.... ..+.|+..|..||+.|..
T Consensus 299 ~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 299 QTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 34578999999986433 368899999999999974
No 152
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.26 E-value=93 Score=31.69 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.3
Q ss_pred HhhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||..... ..+.|+..|..||+.|..
T Consensus 301 ~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 301 RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcC
Confidence 35678999999986433 368999999999999874
No 153
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=20.26 E-value=1.2e+02 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=29.0
Q ss_pred hhCCCeEEecCCc----C------CCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR----G------GLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~----~------g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++||||-||+.. . |.++-+|+..|+.|++.+.+..+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999973 2 24578899999999999876543
No 154
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=20.21 E-value=8.1e+02 Score=23.86 Aligned_cols=27 Identities=4% Similarity=-0.047 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCccccceecCEEEEcCChhh
Q 013082 220 LENWSLCSSNQEKQSLGLSFDAVIMTAPLCN 250 (450)
Q Consensus 220 ~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~ 250 (450)
++++.|++.+|. +++|+.||-+.+...
T Consensus 116 ~~~~~v~~~~g~----~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 116 GDGVLVVLADGR----TIRARVVVDARGPSS 142 (374)
T ss_pred CceEEEEECCCC----EEEeeEEEECCCccc
Confidence 445788888885 899999999988543
No 155
>PLN02507 glutathione reductase
Probab=20.21 E-value=1e+02 Score=31.71 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=28.7
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
+++.|+||.+||...+.. .+.|...|..||+.|..
T Consensus 327 ~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 327 RTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred cCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcC
Confidence 456789999999975433 58999999999999864
No 156
>PRK14727 putative mercuric reductase; Provisional
Probab=20.01 E-value=97 Score=31.62 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=28.5
Q ss_pred HhhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 399 ETNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
.+..|+||.+||-..... ++-|+..|..||..|..
T Consensus 310 ~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 310 ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred ecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence 456789999999975433 68899999999999874
Done!