Query 013082
Match_columns 450
No_of_seqs 119 out of 1239
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sez_A Protoporphyrinogen oxid 100.0 4E-47 1.4E-51 388.4 34.1 437 1-442 40-500 (504)
2 2ivd_A PPO, PPOX, protoporphyr 100.0 6.7E-44 2.3E-48 362.1 33.2 412 1-437 43-475 (478)
3 3lov_A Protoporphyrinogen oxid 100.0 9.1E-44 3.1E-48 360.8 33.5 414 1-439 33-469 (475)
4 3i6d_A Protoporphyrinogen oxid 100.0 1.4E-44 4.9E-49 366.0 26.1 408 1-435 38-468 (470)
5 3nks_A Protoporphyrinogen oxid 100.0 5.3E-44 1.8E-48 362.7 25.4 411 1-434 31-473 (477)
6 4gde_A UDP-galactopyranose mut 100.0 2E-38 6.9E-43 324.6 17.4 399 1-433 38-477 (513)
7 4dsg_A UDP-galactopyranose mut 100.0 8.6E-37 2.9E-41 309.1 17.4 388 1-432 37-452 (484)
8 1s3e_A Amine oxidase [flavin-c 100.0 1E-33 3.5E-38 290.1 22.9 394 1-441 31-460 (520)
9 3ka7_A Oxidoreductase; structu 100.0 8.9E-33 3.1E-37 275.9 17.6 360 1-432 27-424 (425)
10 2vvm_A Monoamine oxidase N; FA 100.0 7.3E-32 2.5E-36 274.7 21.0 384 1-440 66-490 (495)
11 2yg5_A Putrescine oxidase; oxi 100.0 4.4E-32 1.5E-36 273.2 15.6 385 1-435 32-451 (453)
12 3nrn_A Uncharacterized protein 100.0 1.1E-30 3.9E-35 260.4 21.3 362 1-440 27-410 (421)
13 2jae_A L-amino acid oxidase; o 100.0 7E-30 2.4E-34 259.7 2.7 394 1-437 38-487 (489)
14 1b37_A Protein (polyamine oxid 99.9 1.4E-26 4.9E-31 234.1 18.1 381 1-438 32-461 (472)
15 2iid_A L-amino-acid oxidase; f 99.9 1.3E-26 4.3E-31 236.2 16.4 387 1-439 60-488 (498)
16 1v0j_A UDP-galactopyranose mut 99.9 1.7E-25 5.7E-30 221.0 20.5 333 1-435 35-387 (399)
17 2bi7_A UDP-galactopyranose mut 99.9 7.5E-25 2.6E-29 215.0 24.8 333 1-438 30-373 (384)
18 1rsg_A FMS1 protein; FAD bindi 99.9 1.2E-25 3.9E-30 230.0 19.1 375 1-439 36-511 (516)
19 2z3y_A Lysine-specific histone 99.9 2.3E-26 7.8E-31 241.2 13.8 230 197-437 392-660 (662)
20 1i8t_A UDP-galactopyranose mut 99.9 9.4E-25 3.2E-29 213.1 23.8 327 1-433 28-365 (367)
21 2xag_A Lysine-specific histone 99.9 2.3E-26 8E-31 244.2 12.2 232 197-441 563-835 (852)
22 3hdq_A UDP-galactopyranose mut 99.9 4.5E-23 1.5E-27 201.4 23.1 327 1-433 56-389 (397)
23 4dgk_A Phytoene dehydrogenase; 99.9 1.8E-23 6.1E-28 213.0 20.4 396 1-440 28-496 (501)
24 2b9w_A Putative aminooxidase; 99.9 3.7E-24 1.3E-28 213.4 14.6 368 1-432 34-423 (424)
25 4gut_A Lysine-specific histone 99.9 7.1E-24 2.4E-28 223.9 15.0 383 1-433 363-775 (776)
26 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 2.7E-24 9.3E-29 208.2 8.7 219 198-434 104-341 (342)
27 3k7m_X 6-hydroxy-L-nicotine ox 99.9 8.9E-23 3E-27 203.9 16.0 364 1-434 28-425 (431)
28 3ayj_A Pro-enzyme of L-phenyla 99.8 3E-19 1E-23 184.9 10.8 234 197-439 338-683 (721)
29 1yvv_A Amine oxidase, flavin-c 99.7 1E-16 3.5E-21 154.3 12.7 215 199-438 103-330 (336)
30 1d5t_A Guanine nucleotide diss 99.5 6E-13 2E-17 132.5 21.5 350 1-432 33-427 (433)
31 2bcg_G Secretory pathway GDP d 99.5 1E-12 3.5E-17 131.6 19.8 348 1-432 38-438 (453)
32 3p1w_A Rabgdi protein; GDI RAB 99.2 4.1E-11 1.4E-15 119.2 11.5 213 1-248 47-312 (475)
33 2e1m_C L-glutamate oxidase; L- 99.0 3.9E-10 1.3E-14 97.7 6.8 108 329-438 37-155 (181)
34 1vg0_A RAB proteins geranylger 99.0 5E-08 1.7E-12 100.0 22.2 261 18-334 221-506 (650)
35 2e1m_A L-glutamate oxidase; L- 98.4 2.4E-07 8.2E-12 89.5 5.7 50 1-50 71-131 (376)
36 3kkj_A Amine oxidase, flavin-c 97.9 7.5E-06 2.6E-10 74.8 5.6 87 345-438 243-330 (336)
37 2e1m_B L-glutamate oxidase; L- 97.9 1.2E-06 4.2E-11 70.5 0.1 103 235-363 4-108 (130)
38 3kkj_A Amine oxidase, flavin-c 94.6 0.018 6.2E-07 51.7 3.4 44 1-44 29-72 (336)
39 3fpz_A Thiazole biosynthetic e 88.4 0.21 7E-06 46.8 2.5 39 399-437 280-326 (326)
40 1yvv_A Amine oxidase, flavin-c 84.9 0.54 1.8E-05 43.7 3.4 46 1-46 29-74 (336)
41 3ihg_A RDME; flavoenzyme, anth 83.5 10 0.00036 37.7 12.5 39 403-441 301-345 (535)
42 4a5l_A Thioredoxin reductase; 70.5 4.1 0.00014 37.1 4.7 38 400-437 274-313 (314)
43 3fbs_A Oxidoreductase; structu 69.5 4.4 0.00015 36.5 4.6 38 400-437 255-293 (297)
44 2cul_A Glucose-inhibited divis 68.8 4.1 0.00014 35.6 4.0 34 401-435 197-231 (232)
45 1trb_A Thioredoxin reductase; 67.8 4.7 0.00016 36.8 4.5 39 400-438 276-316 (320)
46 3qj4_A Renalase; FAD/NAD(P)-bi 67.6 2.1 7.1E-05 40.0 1.9 44 1-44 31-80 (342)
47 3f8d_A Thioredoxin reductase ( 67.6 5 0.00017 36.5 4.6 38 401-438 278-319 (323)
48 1fl2_A Alkyl hydroperoxide red 67.4 5.1 0.00018 36.4 4.6 38 400-437 267-306 (310)
49 4gcm_A TRXR, thioredoxin reduc 66.7 4.7 0.00016 36.8 4.2 39 399-437 267-307 (312)
50 2gqf_A Hypothetical protein HI 66.6 2.7 9.2E-05 40.4 2.5 33 401-433 362-400 (401)
51 2i0z_A NAD(FAD)-utilizing dehy 65.8 3.4 0.00012 40.3 3.1 35 401-435 403-443 (447)
52 3itj_A Thioredoxin reductase 1 65.4 5.8 0.0002 36.4 4.6 38 400-437 297-336 (338)
53 2gjc_A Thiazole biosynthetic e 63.9 4.5 0.00015 37.6 3.4 36 401-436 282-325 (326)
54 3cty_A Thioredoxin reductase; 63.8 7.1 0.00024 35.7 4.8 38 400-437 278-317 (319)
55 3jsk_A Cypbp37 protein; octame 62.0 5.2 0.00018 37.5 3.4 39 400-438 291-337 (344)
56 2xve_A Flavin-containing monoo 59.9 6.6 0.00023 38.4 4.0 47 400-446 305-351 (464)
57 3oz2_A Digeranylgeranylglycero 59.8 7.6 0.00026 36.4 4.4 35 403-437 277-317 (397)
58 3r9u_A Thioredoxin reductase; 59.8 8.2 0.00028 34.9 4.5 38 400-437 274-313 (315)
59 2ywl_A Thioredoxin reductase r 59.4 9.8 0.00033 31.3 4.5 38 400-437 133-172 (180)
60 1vdc_A NTR, NADPH dependent th 58.0 8.8 0.0003 35.2 4.4 38 400-437 285-324 (333)
61 2q0l_A TRXR, thioredoxin reduc 57.9 10 0.00035 34.3 4.7 36 401-436 272-309 (311)
62 2vdc_G Glutamate synthase [NAD 57.5 8.6 0.00029 37.6 4.3 38 400-437 407-445 (456)
63 3v76_A Flavoprotein; structura 56.7 4.4 0.00015 39.2 2.0 30 401-430 381-416 (417)
64 2q7v_A Thioredoxin reductase; 53.3 13 0.00045 33.9 4.7 38 400-437 274-313 (325)
65 3lzw_A Ferredoxin--NADP reduct 52.2 13 0.00045 33.8 4.5 39 400-438 275-317 (332)
66 2a87_A TRXR, TR, thioredoxin r 51.6 13 0.00046 34.1 4.5 39 400-438 278-318 (335)
67 4fk1_A Putative thioredoxin re 51.5 9.6 0.00033 34.6 3.4 37 400-436 262-300 (304)
68 4a9w_A Monooxygenase; baeyer-v 50.7 11 0.00037 34.7 3.7 38 400-437 312-353 (357)
69 3nlc_A Uncharacterized protein 46.7 12 0.00041 37.5 3.4 37 401-437 507-544 (549)
70 2zbw_A Thioredoxin reductase; 42.4 25 0.00085 32.1 4.8 38 400-437 277-318 (335)
71 3cp8_A TRNA uridine 5-carboxym 40.7 22 0.00076 36.3 4.3 36 401-436 377-412 (641)
72 1rp0_A ARA6, thiazole biosynth 40.3 19 0.00064 32.4 3.4 38 401-438 232-277 (284)
73 1hyu_A AHPF, alkyl hydroperoxi 39.5 25 0.00087 34.8 4.5 38 400-437 478-517 (521)
74 3ab1_A Ferredoxin--NADP reduct 37.1 33 0.0011 31.7 4.7 39 400-438 288-330 (360)
75 3d1c_A Flavin-containing putat 36.1 29 0.00098 32.1 4.1 45 401-445 299-348 (369)
76 3h28_A Sulfide-quinone reducta 35.8 38 0.0013 32.4 5.0 38 401-438 285-335 (430)
77 2gv8_A Monooxygenase; FMO, FAD 35.2 25 0.00085 33.9 3.6 45 401-445 327-371 (447)
78 3ces_A MNMG, tRNA uridine 5-ca 34.3 36 0.0012 34.8 4.6 37 401-437 383-419 (651)
79 3h8l_A NADH oxidase; membrane 32.3 43 0.0015 31.7 4.7 37 401-437 298-337 (409)
80 3sx6_A Sulfide-quinone reducta 32.2 44 0.0015 32.0 4.8 38 401-438 296-346 (437)
81 3vrd_B FCCB subunit, flavocyto 29.2 48 0.0016 31.2 4.4 38 400-437 284-325 (401)
82 2gag_A Heterotetrameric sarcos 29.0 47 0.0016 35.8 4.7 39 400-438 408-446 (965)
83 1gte_A Dihydropyrimidine dehyd 28.7 43 0.0015 36.4 4.4 37 400-436 471-508 (1025)
84 3k30_A Histamine dehydrogenase 28.3 23 0.00079 36.5 2.1 38 400-437 639-676 (690)
85 2zxi_A TRNA uridine 5-carboxym 27.2 52 0.0018 33.5 4.4 35 402-436 389-423 (637)
86 2gmh_A Electron transfer flavo 27.2 54 0.0018 33.0 4.6 34 403-436 347-386 (584)
87 3atr_A Conserved archaeal prot 26.4 58 0.002 31.3 4.5 34 403-436 282-321 (453)
88 1qo8_A Flavocytochrome C3 fuma 26.3 26 0.0009 35.1 2.1 36 400-435 519-563 (566)
89 1cjc_A Protein (adrenodoxin re 26.3 35 0.0012 33.2 2.9 36 402-437 359-396 (460)
90 1y56_A Hypothetical protein PH 26.1 68 0.0023 31.3 5.0 36 402-437 343-378 (493)
91 3ic9_A Dihydrolipoamide dehydr 26.0 50 0.0017 32.3 4.0 34 400-433 303-337 (492)
92 1y0p_A Fumarate reductase flav 25.4 26 0.0009 35.1 1.9 36 400-435 524-568 (571)
93 3lad_A Dihydrolipoamide dehydr 25.4 51 0.0017 32.0 3.9 35 400-434 308-343 (476)
94 4dna_A Probable glutathione re 25.4 51 0.0017 31.9 3.9 35 400-434 296-331 (463)
95 3g5s_A Methylenetetrahydrofola 25.1 46 0.0016 31.9 3.3 36 401-436 327-362 (443)
96 3o0h_A Glutathione reductase; 24.5 53 0.0018 32.0 3.9 35 400-434 316-351 (484)
97 1chu_A Protein (L-aspartate ox 24.3 36 0.0012 33.9 2.6 37 400-436 365-411 (540)
98 1lqt_A FPRA; NADP+ derivative, 24.2 37 0.0013 33.0 2.6 37 401-437 350-388 (456)
99 3dk9_A Grase, GR, glutathione 23.7 56 0.0019 31.7 3.9 35 400-434 321-356 (478)
100 3l8k_A Dihydrolipoyl dehydroge 23.4 60 0.002 31.4 4.0 35 400-434 298-333 (466)
101 1d4d_A Flavocytochrome C fumar 23.4 29 0.001 34.8 1.7 36 400-435 525-569 (572)
102 1v59_A Dihydrolipoamide dehydr 23.0 63 0.0021 31.3 4.1 34 400-433 315-349 (478)
103 2a8x_A Dihydrolipoyl dehydroge 22.8 60 0.0021 31.3 3.9 34 400-433 299-333 (464)
104 3cgv_A Geranylgeranyl reductas 22.4 92 0.0031 28.9 5.0 33 403-435 277-315 (397)
105 1o94_A Tmadh, trimethylamine d 22.4 31 0.0011 35.8 1.8 36 400-435 664-699 (729)
106 4hb9_A Similarities with proba 22.1 63 0.0021 30.1 3.8 37 403-439 311-353 (412)
107 3mfn_A Uncharacterized protein 22.0 58 0.002 25.5 2.7 31 404-435 119-149 (157)
108 3urh_A Dihydrolipoyl dehydroge 22.0 61 0.0021 31.6 3.8 35 400-434 328-363 (491)
109 1dxl_A Dihydrolipoamide dehydr 22.0 67 0.0023 31.0 4.0 34 400-433 307-341 (470)
110 1ges_A Glutathione reductase; 21.7 67 0.0023 30.9 3.9 34 400-433 293-327 (450)
111 2hqm_A GR, grase, glutathione 21.5 67 0.0023 31.2 3.9 34 400-433 312-346 (479)
112 3nix_A Flavoprotein/dehydrogen 21.1 73 0.0025 30.0 4.0 35 403-437 288-328 (421)
113 1ebd_A E3BD, dihydrolipoamide 20.2 71 0.0024 30.7 3.8 34 400-433 298-332 (455)
114 1zmd_A Dihydrolipoyl dehydroge 20.0 72 0.0025 30.9 3.8 35 400-434 310-345 (474)
No 1
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=4e-47 Score=388.36 Aligned_cols=437 Identities=69% Similarity=1.138 Sum_probs=330.1
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~ 80 (450)
+|||+++++|||++|.+.+|+.+|.|+|+++..++.+.++++++|+.+.+.++.....+|++.+|+.+.+|.++..++..
T Consensus 40 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 119 (504)
T 1sez_A 40 TVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKS 119 (504)
T ss_dssp EEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHS
T ss_pred EEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhcc
Confidence 58999999999999999999999999999987788999999999998766554433457778899999999888777776
Q ss_pred ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHHH
Q 013082 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (450)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~ 160 (450)
.++++.++++++.+.+......... ...+++|+.+|++++++++++++++.|++.++|+.+++++|+.++++.++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 197 (504)
T 1sez_A 120 NFLSTGSKLQMLLEPILWKNKKLSQ--VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLE 197 (504)
T ss_dssp SSSCHHHHHHHHTHHHHC------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHH
T ss_pred ccCCHHHHHHHhHhhhccCcccccc--cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHH
Confidence 7777777777766554322211000 12457999999999999999999999999999999999999999999999988
Q ss_pred HhcCChHHHHHhhhhhhhhhhh--hhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------ccCCC--
Q 013082 161 KRYGSVIAGAIKSKFSARKEKS--AEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------SALEN-- 222 (450)
Q Consensus 161 ~~~gsl~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~~~~~-- 222 (450)
+.+|+++.|++...+....... ...... ......+.++++||+++|+++|+.. +. ..+++
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~ 275 (504)
T 1sez_A 198 KRFGSVILGAIRSKLSPKNEKKQGPPKTSA--NKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDS 275 (504)
T ss_dssp HHTSCHHHHHHHHTTC----------CCCS--CCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSS
T ss_pred HHhCCHHHHHHHhhhcccccccccccchhh--ccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCc
Confidence 8889888877654321110000 000000 0001234679999999999887532 11 12344
Q ss_pred ----eEEEecCCCccc-cceecCEEEEcCChhhhhhhhhccCC-CCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCee
Q 013082 223 ----WSLCSSNQEKQS-LGLSFDAVIMTAPLCNVKEMKITKGG-NLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFG 296 (450)
Q Consensus 223 ----~~v~~~~g~~~~-~~~~ad~VI~t~P~~~~~~ll~~~~~-~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g 296 (450)
|.|++.++++.. +++.||+||+|+|++.+.+++ .++. .+.....+.+++|.++.+|++.|++++|+.+..+++
T Consensus 276 ~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll-~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 354 (504)
T 1sez_A 276 AIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMK-IAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFG 354 (504)
T ss_dssp SSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSE-EESSSSBCCCTTSCCCCEEEEEEEEEEEEGGGBSSCCCSSE
T ss_pred ccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHh-hcccCCcccHHHHhcCCCCceEEEEEEEchhhcCCCCCceE
Confidence 677765321111 378999999999999999986 2111 111113377889999999999999988865667788
Q ss_pred EEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeec
Q 013082 297 VLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFF 376 (450)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~ 376 (450)
+++++.+..++..+.+++|.|..+|..+|+|+.+|++|+++..+..+..++++++++.++++|+++++...+|.++.+++
T Consensus 355 ~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~ 434 (504)
T 1sez_A 355 VLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLY 434 (504)
T ss_dssp EECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEE
T ss_pred EEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeE
Confidence 88876542112356788888878887778888888999987766677788999999999999999998776788999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccchhh
Q 013082 377 WSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDK 442 (450)
Q Consensus 377 w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~ 442 (450)
|.+++|+|.+||...++.++...++.+||||||+++.|.++++|+.||.+||++|++.+.....++
T Consensus 435 w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~~l~~~~~~~ 500 (504)
T 1sez_A 435 WSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVSTDS 500 (504)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC---
T ss_pred CCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999877666655566788999999999888899999999999999999997765544
No 2
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=6.7e-44 Score=362.07 Aligned_cols=412 Identities=26% Similarity=0.460 Sum_probs=318.6
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccC-CCCceEEEECCEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPI-SQYKRYVVRNGVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~-~~~~~~~~~~G~~~~~p~~~~~~~~ 79 (450)
+|||+++++|||++|.+.+|+.+|.|++++...++.+.++++++|+.+.+.... .....+++.+|+.+.+|.+...++.
T Consensus 43 ~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 122 (478)
T 2ivd_A 43 VLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLA 122 (478)
T ss_dssp EEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHT
T ss_pred EEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhcc
Confidence 589999999999999999999999999999877889999999999987655322 2346788889999999988877777
Q ss_pred cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHH
Q 013082 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (450)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~ 159 (450)
..++++.++.+++.+.+.... ...+++|+.+|+++++++++++.++.|++.++|+.+++++|+.++++.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 195 (478)
T 2ivd_A 123 SDILPLGARLRVAGELFSRRA-------PEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKM 195 (478)
T ss_dssp CSSSCHHHHHHHHGGGGCCCC-------CTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHH
T ss_pred CCCCCHHHHHHHhhhhhcCCC-------CCCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHH
Confidence 677777778787766654222 2357899999999999999999999999999999999999999999888887
Q ss_pred HHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCC----ccceEeccchHHHHHhcccc-------C------CccCCC
Q 013082 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQ----RGSFSFLGGMQVLSLSYSHD-------G------RSALEN 222 (450)
Q Consensus 160 ~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~ 222 (450)
+..+++++.++...... .... .+ + .... ...++++||+++|+++++.. + ...+++
T Consensus 196 ~~~~~~~~~~~~~~~~~--~~~~--~~---~-~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~ 267 (478)
T 2ivd_A 196 EREHRSLILGAIRAQKA--QRQA--AL---P-AGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGG 267 (478)
T ss_dssp HHHHSSHHHHHHHHHHH--HTCC----------CCSCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--C
T ss_pred HHhcCcHHHHHHHhhhc--cccc--cC---c-ccccccccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCe
Confidence 77788876665432100 0000 00 0 0011 45679999999999877521 1 123456
Q ss_pred eEEEe---cCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEe
Q 013082 223 WSLCS---SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLV 299 (450)
Q Consensus 223 ~~v~~---~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~ 299 (450)
|.|++ .+|+ ++.||+||+|+|++++.+|+ ++.++...+.+++++|.++.+|++.|++++|+.+ +++++++
T Consensus 268 ~~v~~~~~~~g~----~~~ad~vV~a~~~~~~~~ll--~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~ 340 (478)
T 2ivd_A 268 WRLIIEEHGRRA----ELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGFGFLV 340 (478)
T ss_dssp CEEEEEETTEEE----EEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCC-CSSEEEC
T ss_pred EEEEEeecCCCc----eEEcCEEEECCCHHHHHHHh--hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCC-CceEEEe
Confidence 88887 5553 78999999999999999986 5544445667788999999999999998877532 5677777
Q ss_pred cCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCC
Q 013082 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSK 379 (450)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~ 379 (450)
|..+ +.++.+++|++..++.+.|++..+|++++++..+..+.+.+++++.+.++++|+++++....|.+..+++|.+
T Consensus 341 ~~~~---~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~ 417 (478)
T 2ivd_A 341 PAEE---QRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPL 417 (478)
T ss_dssp CGGG---CCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESS
T ss_pred cCCC---CCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence 6533 2356778898877776677777888888877666566678999999999999999998766788888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 380 AFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 380 a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
++|.|.+|+...+..++......+||||||+++.|.++++|+.||++||++|++.+++
T Consensus 418 ~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~gA~~SG~~aA~~i~~~l~~ 475 (478)
T 2ivd_A 418 GIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLNDCIRNAAQLADALVAGNTS 475 (478)
T ss_dssp CCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHHHHHHHHHHHHHHHCC----
T ss_pred cccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999997665555433333679999999998888999999999999999887654
No 3
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=9.1e-44 Score=360.81 Aligned_cols=414 Identities=18% Similarity=0.286 Sum_probs=321.3
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCC-------
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~------- 73 (450)
+|||+++++||+++|.+.+|+.+|.|+|++...++.+.++++++|+.+.+... .....+++.+|+++.+|..
T Consensus 33 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~p~ 111 (475)
T 3lov_A 33 TLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKLVRN-NTSQAFILDTGGLHPIPKGAVMGIPT 111 (475)
T ss_dssp EEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGEEEC-CCCCEEEEETTEEEECCSSEETTEES
T ss_pred EEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceEeec-CCCceEEEECCEEEECCCcccccCcC
Confidence 58999999999999999999999999999988888999999999998876542 2456788889998887643
Q ss_pred -hhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc
Q 013082 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (450)
Q Consensus 74 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~ 152 (450)
+..++...+++..+++ .+.+.+....... ....+++|+.+|++++++.++.++++.|++.++|+.+++++|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~ 187 (475)
T 3lov_A 112 DLDLFRQTTLLTEEEKQ-EVADLLLHPSDSL---RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFAT 187 (475)
T ss_dssp CHHHHTTCSSSCHHHHH-HHHHHHHSCCTTC---CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGCCCTTTSBSTTT
T ss_pred chHHHhhccCCChhHHH-HhhCcccCCcccc---cCCCCCcCHHHHHHHHhCHHHHHHHHHHHhceeecCChHHcCHHHH
Confidence 3556666777777766 4444432111100 0145789999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------c
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------S 218 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~ 218 (450)
++.+..++..+++++.++......+.... .... ....+..+++++||+++|+++++.. +. +
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 262 (475)
T 3lov_A 188 YPQFVANEQKAGSLFEGMRLMRPLDQLPQ---TPQT--TIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISR 262 (475)
T ss_dssp CHHHHHHHHHHSSHHHHHHHTCC-------------------CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEE
T ss_pred HHHHHHHHHhcCcHHHHHHHhcccccccc---cccc--cccCCCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEE
Confidence 99998888888888777643210000000 0000 0001234579999999999877521 11 1
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~ 298 (450)
.+++|.|++.+| ++.||+||+|+|++++.+|+ .+. + . +.+.+++|.++.+|++.|++++ +.+.+++|++
T Consensus 263 ~~~~~~v~~~~g-----~~~ad~vV~a~p~~~~~~ll--~~~-~-~-~~~~~~~~~~~~~v~l~~~~~~-~~~~~g~g~l 331 (475)
T 3lov_A 263 EDGRYRLKTDHG-----PEYADYVLLTIPHPQVVQLL--PDA-H-L-PELEQLTTHSTATVTMIFDQQQ-SLPIEGTGFV 331 (475)
T ss_dssp ETTEEEEECTTC-----CEEESEEEECSCHHHHHHHC--TTS-C-C-HHHHTCCEEEEEEEEEEEECCS-SCSSSSSEEE
T ss_pred eCCEEEEEECCC-----eEECCEEEECCCHHHHHHHc--Ccc-C-H-HHHhcCCCCeEEEEEEEECCcC-CCCCCCEEEE
Confidence 345688888776 68999999999999999997 322 2 2 5667889999999999999886 4456778899
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccC
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWS 378 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~ 378 (450)
+++.+ +..+.+++|++..++...|+ ..+|++++++..+..+.+++++++++.++++|++++|...+|.++.+++|+
T Consensus 332 ~~~~~---~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~ 407 (475)
T 3lov_A 332 VNRRA---PYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLM 407 (475)
T ss_dssp ECTTS---SCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEE
T ss_pred ecCCC---CCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 87765 35678899999888887776 678888887766666778899999999999999999987789999999999
Q ss_pred CCCCCCCCCHHHHHHHHHH-HHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 379 KAFPLYGRDYDSVLEAIEK-METNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 379 ~a~p~~~~g~~~~~~~~~~-~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
+++|+|++|+...+..++. +.++.+||||||+++.+.++++|+.||+++|++|+..+....
T Consensus 408 ~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~aA~~i~~~l~~~~ 469 (475)
T 3lov_A 408 DGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKTMIESIELEQSHTD 469 (475)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHHHHHHHHHTC----
T ss_pred cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999877776654 446778999999999888999999999999999999886653
No 4
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-44 Score=366.01 Aligned_cols=408 Identities=23% Similarity=0.411 Sum_probs=303.3
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCC-------
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~------- 73 (450)
+|||+++++|||++|.+.+|+.+|.|+|+++..++.+.++++++|+.+.+... .....+++.+|+++.+|..
T Consensus 38 ~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~p~ 116 (470)
T 3i6d_A 38 TLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNN-ATGQSYVLVNRTLHPMPKGAVMGIPT 116 (470)
T ss_dssp EEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCCTTEEEC-CCCCEEEECSSCEEECCC--------
T ss_pred EEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCcceeecC-CCCccEEEECCEEEECCCCcccCCcC
Confidence 58999999999999999999999999999988888999999999998776532 2346788889988777643
Q ss_pred -hhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc
Q 013082 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (450)
Q Consensus 74 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~ 152 (450)
+..++...+++..++++.+.+.+.... ...++.|+.+|++++++.+..+.++.|++.++|+.+++++|+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 189 (470)
T 3i6d_A 117 KIAPFVSTGLFSLSGKARAAMDFILPAS-------KTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMST 189 (470)
T ss_dssp -------------CCSHHHHHHHHSCCC-------SSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHH
T ss_pred chHHhhccCcCCHHHHHHHhcCcccCCC-------CCCCCcCHHHHHHHhcCHHHHHHhccchhcEEecCCHHHhhHHHH
Confidence 233333344444445555544443211 246789999999999999999999999999999999999999988
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC------c
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------S 218 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~ 218 (450)
++.+..++..++++..++...... .. . ..+ ........++++||+++|+++++.. +. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~--~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 261 (470)
T 3i6d_A 190 FPQFYQTEQKHRSLILGMKKTRPQ-GS-G----QQL--TAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSH 261 (470)
T ss_dssp CGGGCC---------------------------------------EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEE
T ss_pred HHHHHHHHHhcCcHHHHHHhhccc-cc-c----ccc--cccCCceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEE
Confidence 888766666667765554322100 00 0 000 0001234568999999999877521 11 2
Q ss_pred cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE
Q 013082 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (450)
Q Consensus 219 ~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~ 298 (450)
.+++|.|++++|+ ++.||+||+|+|++++.+|+ .+. +..+.+++++|.++.+|++.|++++|+.+..++|++
T Consensus 262 ~~~~~~v~~~~g~----~~~ad~vi~a~p~~~~~~l~--~~~--~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l 333 (470)
T 3i6d_A 262 SGSCYSLELDNGV----TLDADSVIVTAPHKAAAGML--SEL--PAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFV 333 (470)
T ss_dssp CSSSEEEEESSSC----EEEESEEEECSCHHHHHHHT--TTS--TTHHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEE
T ss_pred cCCeEEEEECCCC----EEECCEEEECCCHHHHHHHc--CCc--hhhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEE
Confidence 3567899998884 79999999999999999997 322 344567789999999999999999886556788999
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccC
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWS 378 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~ 378 (450)
+++.. ...+.+++|++.+++...|++..+|++++++.++..+..++++++++.++++|++++|...+|..+.+++|+
T Consensus 334 ~~~~~---~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~ 410 (470)
T 3i6d_A 334 ISRNS---DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWH 410 (470)
T ss_dssp ECSTT---CCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEE
T ss_pred ccCCC---CCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcC
Confidence 88765 356778889988788777888788888887777667778899999999999999999887788999999999
Q ss_pred CCCCCCCCCHHHHHHHHHH-HHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHh
Q 013082 379 KAFPLYGRDYDSVLEAIEK-METNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 379 ~a~p~~~~g~~~~~~~~~~-~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++|+|++|+...+..++. +.++.+||+|||+|+.|.++++|+.||.++|++|++.+
T Consensus 411 ~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 411 ESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp EEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999877666654 44667899999999988899999999999999999876
No 5
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.3e-44 Score=362.71 Aligned_cols=411 Identities=23% Similarity=0.343 Sum_probs=310.7
Q ss_pred CeeccCCCCCeeEEEEec-CcEEEccCCCccccC---hHHHHHHHHHcCCCccccccC----CCCceEEEECCEEeecCC
Q 013082 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTES---EMEVKGLLDDLGIREKQQFPI----SQYKRYVVRNGVPFLIPT 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~-~g~~~D~G~~~~~~~---~~~~~~l~~~lGl~~~~~~~~----~~~~~~~~~~G~~~~~p~ 72 (450)
+|||+++++||+++|.+. +|+.+|.|++++... ++.+.+|++++|+.+++.... ....+|++.+|+++.+|.
T Consensus 31 ~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~ 110 (477)
T 3nks_A 31 VLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110 (477)
T ss_dssp EEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCC
T ss_pred EEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCC
Confidence 589999999999999875 699999999998754 678899999999987654321 123478888999999987
Q ss_pred ChhHhhhc-ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhc
Q 013082 73 NPIALLTS-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRH 151 (450)
Q Consensus 73 ~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~ 151 (450)
++..++.. ..+......+++.+.+.. . ...+++|+.+|++++++.++.+++++|++.++|+.+++++|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~ 182 (477)
T 3nks_A 111 GLRGLLRPSPPFSKPLFWAGLRELTKP-R-------GKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRS 182 (477)
T ss_dssp SSCC---CCTTSCSCSSHHHHTTTTSC-C-------CCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHHHSSCTTTBBHHH
T ss_pred ChhhcccccchhhhHHHHHHHHhhhcC-C-------CCCCCcCHHHHHHHhhCHHHHHHHHHHHhcccccCCHHHhhHHH
Confidence 65444321 222211223333343321 1 23567999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----------cCC----
Q 013082 152 SFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----------DGR---- 217 (450)
Q Consensus 152 ~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----------~~~---- 217 (450)
+++.++.++..+++++.|++........ ...+.+.........+++++||+++|+++|+. .+.
T Consensus 183 ~~~~l~~~e~~~gsl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~ 259 (477)
T 3nks_A 183 CFPSLFQAEQTHRSILLGLLLGAGRTPQ---PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCG 259 (477)
T ss_dssp HCHHHHHHHHHHSCHHHHHHHC-----C---CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccccC---CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEE
Confidence 9999999888899998887643211000 00000000001234578999999999987742 111
Q ss_pred --ccCCC-eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCC
Q 013082 218 --SALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (450)
Q Consensus 218 --~~~~~-~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~ 294 (450)
..+++ |.|+++++ ++.||+||+|+|++.+.+|+ ++..|+..+.+.+++|.++.+|++.|++++|+ .++
T Consensus 260 i~~~~~~~~~v~~~~~-----~~~ad~vv~a~p~~~~~~ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~--~~~ 330 (477)
T 3nks_A 260 LSLQAEGRWKVSLRDS-----SLEADHVISAIPASVLSELL--PAEAAPLARALSAITAVSVAVVNLQYQGAHLP--VQG 330 (477)
T ss_dssp EEECGGGCEEEECSSC-----EEEESEEEECSCHHHHHHHS--CGGGHHHHHHHHTCCEEEEEEEEEEETTCCCS--SCS
T ss_pred EEEcCCceEEEEECCe-----EEEcCEEEECCCHHHHHHhc--cccCHHHHHHHhcCCCCcEEEEEEEECCCCCC--CCC
Confidence 12345 88876443 78999999999999999996 55555566778889999999999999998774 467
Q ss_pred eeEEecCCCCCCCCceEEEEeccCCCCCCC-CCCcEEEEEEeCCCCCCcC----CCCCHHHHHHHHHHHHHHHhCCCCCC
Q 013082 295 FGVLVPSKEQQNGLKTLGTLFSSMMFPDRV-PKDLYLYTTFVGGSRNKEL----AKASTDELKQIVTSDLRQLLGVEGDP 369 (450)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~-p~g~~~l~~~~~~~~~~~~----~~~~~eel~~~~~~~L~~~~~~~~~p 369 (450)
+|+++|+.+ +..+++++|+|.++|.+. |++..+|++++++.+...+ .+++++++++.++++|++++|+..+|
T Consensus 331 ~g~l~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~ 407 (477)
T 3nks_A 331 FGHLVPSSE---DPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMP 407 (477)
T ss_dssp SEEECCTTT---CSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCC
T ss_pred ceEEccCCC---CCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 899998765 356889999998888653 3467888999876543322 25699999999999999999988789
Q ss_pred ceEEeeccCCCCCCCCCCHHHHHHHHHHHHhh-CCCeEEecCCcCCCChHHHHHHHHHHHHHHHHH
Q 013082 370 AFVNHFFWSKAFPLYGRDYDSVLEAIEKMETN-LPGFFYAGNHRGGLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 370 ~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~ 434 (450)
..+.+++|++++|+|++|+...+..++..... .++|++||+|+.|.++++|+.||++||++|+.+
T Consensus 408 ~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 408 SHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp SEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887777653333 468999999999999999999999999999864
No 6
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=100.00 E-value=2e-38 Score=324.56 Aligned_cols=399 Identities=12% Similarity=0.123 Sum_probs=269.7
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~ 79 (450)
+|||+++++||+++|+. .+|+.+|.|+|+|+.+++.+.+|++++|....... ......+++.+|+++++|... .+
T Consensus 38 ~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~~~~-~~~~~~~i~~~g~~~~~p~~~--~~- 113 (513)
T 4gde_A 38 MIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWY-THQRISYVRCQGQWVPYPFQN--NI- 113 (513)
T ss_dssp EEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGGGEE-EEECCEEEEETTEEEESSGGG--GG-
T ss_pred EEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccceeE-EecCceEEEECCeEeecchhh--hh-
Confidence 59999999999999974 68999999999999889999999999987543222 222456788999998887532 11
Q ss_pred cccCChhHHHHHhcccc---ccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhH
Q 013082 80 SNFLSAQSKFQIILEPF---LWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPEL 156 (450)
Q Consensus 80 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l 156 (450)
..+......++....+ ..... ...++.|+++|+.+++|+++++.++.|++.++|+.+++++|+.|+.+++
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~ 186 (513)
T 4gde_A 114 -SMLPKEEQVKCIDGMIDAALEARV------ANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERV 186 (513)
T ss_dssp -GGSCHHHHHHHHHHHHHHHHHHHT------CCSCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSC
T ss_pred -hhcchhhHHHHHHHHHHHHHhhhc------ccccccCHHHHHHHhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhh
Confidence 1122222333222111 10111 2456789999999999999999999999999999999999999886654
Q ss_pred HHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc----------CCc----cCCC
Q 013082 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----------GRS----ALEN 222 (450)
Q Consensus 157 ~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----------~~~----~~~~ 222 (450)
..... .....+....... ... .......+.++||+++++++++.. +.+ ..++
T Consensus 187 ~~~~~--~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~ 252 (513)
T 4gde_A 187 AAPNL--KAVTTNVILGKTA---------GNW---GPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANN 252 (513)
T ss_dssp CCCCH--HHHHHHHHHTCCC---------CSC---BTTBEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTT
T ss_pred cccch--hhhhhhhhhcccc---------ccc---ccccceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccC
Confidence 21100 0001111111000 000 001122346789999999888531 111 1234
Q ss_pred eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCC
Q 013082 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSK 302 (450)
Q Consensus 223 ~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~ 302 (450)
..+++.+|. ++.||+||+|+|++.+.+++ .+ ++.......++|.++.+|++.++........+.+++++++.
T Consensus 253 ~~v~~~~G~----~~~ad~vI~t~P~~~l~~~l--~~--~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~ 324 (513)
T 4gde_A 253 KTVTLQDGT----TIGYKKLVSTMAVDFLAEAM--ND--QELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPED 324 (513)
T ss_dssp TEEEETTSC----EEEEEEEEECSCHHHHHHHT--TC--HHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCST
T ss_pred CEEEEcCCC----EEECCEEEECCCHHHHHHhc--Cc--hhhHhhhhcccCCceEEEEEEEeccccccccccceeeccCC
Confidence 456777875 89999999999999999997 32 22334556789999999999998764332233444555543
Q ss_pred CCC-----------------CCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC
Q 013082 303 EQQ-----------------NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV 365 (450)
Q Consensus 303 ~~~-----------------~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~ 365 (450)
+-. ....+.+.+|.+..++...+.+...+.+++.+.....+..+++|++++.++++|.++.++
T Consensus 325 ~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i 404 (513)
T 4gde_A 325 NCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEML 404 (513)
T ss_dssp TCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSS
T ss_pred CCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCC
Confidence 300 011233344444445544443333344444433344566889999999999999999877
Q ss_pred CC--CCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCC--cCC--CChHHHHHHHHHHHHHHHH
Q 013082 366 EG--DPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNH--RGG--LSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 366 ~~--~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~--~~g--~~~~~ai~SG~~aA~~i~~ 433 (450)
.. +++...++||++|||+|.+||...++.++..+.. +|||++|.. +.. ..+++||.+|+.||+.|+.
T Consensus 405 ~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~-~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 405 KPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD-KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp CTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh-cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 64 4578889999999999999999988888765555 699999965 222 3699999999999999985
No 7
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=100.00 E-value=8.6e-37 Score=309.11 Aligned_cols=388 Identities=17% Similarity=0.161 Sum_probs=277.4
Q ss_pred CeeccCCCCCeeEEEE-ecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~-~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~ 79 (450)
+|||+++++||+++|+ ..+|+.+|.|+|+++..++.+.+++++++ . ... .....++++.+|+++++|.+. .+
T Consensus 37 ~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~-~-~~~--~~~~~~~~~~~g~~~~~P~~~--~~- 109 (484)
T 4dsg_A 37 HLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV-Q-GWN--VLQRESWVWVRGRWVPYPFQN--NI- 109 (484)
T ss_dssp EEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHC-S-CEE--EEECCCEEEETTEEEESSGGG--CG-
T ss_pred EEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHh-h-hhh--hccCceEEEECCEEEEeCccc--hh-
Confidence 5899999999999996 68899999999999888889999999985 3 222 223457788999999988321 11
Q ss_pred cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHHH
Q 013082 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (450)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~ 159 (450)
..++...+.+++...+..... ....+++|+++|+.+++|.+++++|+.|++.++|+.+++++|+.|+++++...
T Consensus 110 -~~l~~~~~~~~~~~ll~~~~~-----~~~~~~~s~~e~~~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~ 183 (484)
T 4dsg_A 110 -HRLPEQDRKRCLDELVRSHAR-----TYTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPV 183 (484)
T ss_dssp -GGSCHHHHHHHHHHHHHHHHC-----CCSSCCSSHHHHHHHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCC
T ss_pred -hhCCHHHHHHHHHHHHHHHhc-----cCCCCCCCHHHHHHHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCC
Confidence 234444444444333221100 02457899999999999999999999999999999999999999887654320
Q ss_pred HHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccc--eEeccchHHHHHhcccc--------CC--cc-----CCC
Q 013082 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS--FSFLGGMQVLSLSYSHD--------GR--SA-----LEN 222 (450)
Q Consensus 160 ~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gG~~~l~~~l~~~--------~~--~~-----~~~ 222 (450)
. ...++.+++..... . ....... |.++||+++|+++++.. +. ++ +++
T Consensus 184 ~--l~~~~~~~~~~~~~---------~-----~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~ 247 (484)
T 4dsg_A 184 D--LERIRRNIQENRDD---------L-----GWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAK 247 (484)
T ss_dssp C--HHHHHHHHHHTCCC---------C-----CCSTTSEEEEESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETTTT
T ss_pred C--HHHHHHHHhhcccc---------c-----CCCccceEEeecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEecCC
Confidence 0 00112232211000 0 0001112 24569999999887531 11 11 111
Q ss_pred eEEEecCCCccccceecCEEEEcCChhhhhhhhhccC----CCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEE
Q 013082 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG----GNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (450)
Q Consensus 223 ~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~----~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~ 298 (450)
.|++.+|+ ++.||+||+|+|++.+.+++ .+ .+++..+.+.+++|.++.+|++.|+++......++++++
T Consensus 248 -~v~~~~G~----~~~ad~VI~a~p~~~~~~ll--~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~ 320 (484)
T 4dsg_A 248 -TITFSNGE----VVSYDYLISTVPFDNLLRMT--KGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLY 320 (484)
T ss_dssp -EEEETTSC----EEECSEEEECSCHHHHHHHE--ECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEE
T ss_pred -EEEECCCC----EEECCEEEECCCHHHHHHHh--hccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEE
Confidence 24456663 79999999999999999997 43 344455668889999999999999876321113568888
Q ss_pred ecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCC-CC-ceEEeec
Q 013082 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEG-DP-AFVNHFF 376 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~-~p-~~~~v~~ 376 (450)
+|+.+ .++..+++.++.+|..+|+|++++.+.++.. ..+.++++++++.++++|.++.++.+ ++ ....++|
T Consensus 321 vp~~~----~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r 393 (484)
T 4dsg_A 321 FPEDT----SPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYR 393 (484)
T ss_dssp CCSTT----CSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEE
T ss_pred EEcCC----CeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEE
Confidence 88765 3455667777788888898888777666432 34467999999999999999876653 34 4567899
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCC---cCC-CChHHHHHHHHHHHHHHH
Q 013082 377 WSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNH---RGG-LSVGKSIASGCKAAELVI 432 (450)
Q Consensus 377 w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~---~~g-~~~~~ai~SG~~aA~~i~ 432 (450)
|+++||+|.+|+...++.++..+... ||+++|++ .++ .++++||.||++||++|+
T Consensus 394 ~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 394 IEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp EEEEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred eCccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999888888766666 99999984 343 479999999999999997
No 8
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=1e-33 Score=290.06 Aligned_cols=394 Identities=15% Similarity=0.172 Sum_probs=265.5
Q ss_pred CeeccCCCCCeeEEEEecC-cEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCC------
Q 013082 1 MVFEADERAGGKLRSISKD-GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------ 73 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~-g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~------ 73 (450)
+|||+++++|||++|.+.. |+.+|.|++++...++.+.++++++|+...... .....+++.+|+.+.++..
T Consensus 31 ~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~g~~~~~~~~~p~~~~ 108 (520)
T 1s3e_A 31 VVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVN--EVERLIHHVKGKSYPFRGPFPPVWN 108 (520)
T ss_dssp EEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECC--CSSEEEEEETTEEEEECSSSCCCCS
T ss_pred EEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceecc--cCCceEEEECCEEEEecCCCCCCCC
Confidence 5899999999999999985 999999999998777889999999999764433 2234555678887665432
Q ss_pred hhHhhhc-ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc
Q 013082 74 PIALLTS-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (450)
Q Consensus 74 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~ 152 (450)
+...... .++ ..+..+...+..............+++|+.+|++++++++.++.++.+++.+.++.+++++|+.++
T Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~ 185 (520)
T 1s3e_A 109 PITYLDHNNFW---RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWF 185 (520)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHH
Confidence 1111100 011 011111111100000000000124688999999999888888999999999999999999998876
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc-------cC------Ccc
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH-------DG------RSA 219 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~-------~~------~~~ 219 (450)
+..+ ...+++.. +... ......++++||+++|+++++. .+ ...
T Consensus 186 ~~~~----~~~g~~~~-~~~~-------------------~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~ 241 (520)
T 1s3e_A 186 LWYV----KQCGGTTR-IIST-------------------TNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQT 241 (520)
T ss_dssp HHHH----HTTTCHHH-HHCS-------------------TTSTTSEEETTCTHHHHHHHHHHHGGGEESSCCEEEEECS
T ss_pred HHHH----hhcCchhh-hccc-------------------CCCcceEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEEC
Confidence 4322 23343311 1100 0122346899999999987752 11 123
Q ss_pred CCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCe-eE
Q 013082 220 LENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGF-GV 297 (450)
Q Consensus 220 ~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~-g~ 297 (450)
+++|.|++.+|+ ++.||+||+|+|++++.+|+ +.|..|. ..+.+++++|.++.+|++.|++++|+. .++ |.
T Consensus 242 ~~~v~v~~~~g~----~~~ad~VI~a~p~~~l~~l~-~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~--~~~~g~ 314 (520)
T 1s3e_A 242 RENVLVETLNHE----MYEAKYVISAIPPTLGMKIH-FNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK--KDYCGT 314 (520)
T ss_dssp SSSEEEEETTSC----EEEESEEEECSCGGGGGGSE-EESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGG--GTEEEE
T ss_pred CCeEEEEECCCe----EEEeCEEEECCCHHHHccee-eCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccC--CCCCce
Confidence 566888888874 79999999999999999987 4444443 456788999999999999999988742 233 44
Q ss_pred EecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC--CCCceEEee
Q 013082 298 LVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE--GDPAFVNHF 375 (450)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~ 375 (450)
++...++ .....+|++.. .+++..+|++++.+..+..|.+++++++.+.++++|+++++.. .+|.++.++
T Consensus 315 ~~~~~~~----~~~~~~~d~~~----~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~ 386 (520)
T 1s3e_A 315 MIIDGEE----APVAYTLDDTK----PEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEK 386 (520)
T ss_dssp EEECSTT----CSCSEEEECCC----TTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEE
T ss_pred eeccCCC----CceEEEeeCCC----CCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCccEEEEE
Confidence 4422221 12334666542 1223357777876654455677899999999999999999764 478889999
Q ss_pred ccCC------CC-CCCCCCHHHHHHHHH-HHHhhCCCeEEecCCc---CCCChHHHHHHHHHHHHHHHHHhcccchh
Q 013082 376 FWSK------AF-PLYGRDYDSVLEAIE-KMETNLPGFFYAGNHR---GGLSVGKSIASGCKAAELVISYLEKSSDD 441 (450)
Q Consensus 376 ~w~~------a~-p~~~~g~~~~~~~~~-~~~~~~~~l~~aG~~~---~g~~~~~ai~SG~~aA~~i~~~~~~~~~~ 441 (450)
+|.. ++ +.+.+|+... ++ .+.++++||||||+++ ...+++||+.||.+||++|++.+.....+
T Consensus 387 ~W~~~~~~~G~~~~~~~~g~~~~---~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~~~~~~ 460 (520)
T 1s3e_A 387 NWCEEQYSGGCYTTYFPPGILTQ---YGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPED 460 (520)
T ss_dssp EGGGCTTTCSSSCBCCCTTHHHH---HGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred eeCCCCCCCCCCccccCCCcccc---chHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9952 22 2566776432 22 2345678999999985 22369999999999999999998765443
No 9
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=8.9e-33 Score=275.95 Aligned_cols=360 Identities=14% Similarity=0.098 Sum_probs=257.8
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc--ChHHHHHHHHHcCCCccccccCCCCceEEEEC-----------CEE
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-----------GVP 67 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~--~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~-----------G~~ 67 (450)
+|||+++++||+++++..+|+.+|.|++++.. .++.+.++++++|+...+.... ..+++.+ |+.
T Consensus 27 ~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 3ka7_A 27 EVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVRSE---MTTVRVPLKKGNPDYVKGFKD 103 (425)
T ss_dssp EEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEECC---CCEEEEESSTTCCSSTTCEEE
T ss_pred EEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEecC---CceEEeecCCCcccccccccc
Confidence 58999999999999999999999999987763 3468899999999987655432 2223332 555
Q ss_pred eecCCChhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccc
Q 013082 68 FLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESL 147 (450)
Q Consensus 68 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 147 (450)
+.++. .. ..+++.++.++......... ...++.|+.+|++++++.+.+++++.|++..+++.+++++
T Consensus 104 ~~~~~----~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (425)
T 3ka7_A 104 ISFND----FP--SLLSYKDRMKIALLIVSTRK-------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEV 170 (425)
T ss_dssp EEGGG----GG--GGSCHHHHHHHHHHHHHTTT-------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGS
T ss_pred eehhh----hh--hhCCHHHHHHHHHHHHhhhh-------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccc
Confidence 55432 11 34566666665543322111 1346789999999999999999999999999999999999
Q ss_pred hhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----------cCC
Q 013082 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----------DGR 217 (450)
Q Consensus 148 Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----------~~~ 217 (450)
|+.++++.+..... ..+.++++||++.|+++|.. .+.
T Consensus 171 s~~~~~~~~~~~~~---------------------------------~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~ 217 (425)
T 3ka7_A 171 PVEEVFEIIENMYR---------------------------------FGGTGIPEGGCKGIIDALETVISANGGKIHTGQ 217 (425)
T ss_dssp BHHHHHHHHHHHHH---------------------------------HCSCEEETTSHHHHHHHHHHHHHHTTCEEECSC
T ss_pred hHHHHHHHHHHHHh---------------------------------cCCccccCCCHHHHHHHHHHHHHHcCCEEEECC
Confidence 98877665443210 12346899999999887752 111
Q ss_pred c------cCCCeE-EEecCCCccccceecCEEEEcCChhhhhhhhhccCC-----CCCcCCCCCCCCCCCeEEEEEEecC
Q 013082 218 S------ALENWS-LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG-----NLFPLDFLPEVIYMPLSVIITTFKK 285 (450)
Q Consensus 218 ~------~~~~~~-v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~-----~p~~~~~l~~~~y~~~~~v~l~~~~ 285 (450)
+ .+++|. |+++ |+ ++.||+||+|+|+..+.+|+ ++. ++++.+.+++++|.++++|++.+++
T Consensus 218 ~V~~i~~~~~~~~gv~~~-g~----~~~ad~VV~a~~~~~~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 290 (425)
T 3ka7_A 218 EVSKILIENGKAAGIIAD-DR----IHDADLVISNLGHAATAVLC--SEALSKEADAAYFKMVGTLQPSAGIKICLAADE 290 (425)
T ss_dssp CEEEEEEETTEEEEEEET-TE----EEECSEEEECSCHHHHHHHT--TTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESS
T ss_pred ceeEEEEECCEEEEEEEC-CE----EEECCEEEECCCHHHHHHhc--CCcccccCCHHHHHHhhCcCCCceEEEEeecCC
Confidence 1 234454 5554 43 79999999999999999987 322 2223455677889988999999998
Q ss_pred CCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCC
Q 013082 286 ENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGV 365 (450)
Q Consensus 286 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~ 365 (450)
+.+ .+++++++.+. ..+.++++.|..+|.++|+|++++.+++...+ +. .+. .+++++.++++|+++++.
T Consensus 291 ~~~----~~~~~~~~~~~----~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~-~~-~~~-~~~~~~~~~~~l~~~~p~ 359 (425)
T 3ka7_A 291 PLV----GHTGVLLTPYT----RRINGVNEVTQADPELAPPGKHLTMCHQYVAP-EN-VKN-LESEIEMGLEDLKEIFPG 359 (425)
T ss_dssp CSS----CSSSEEECCSS----SSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-GG-GGG-HHHHHHHHHHHHHHHSTT
T ss_pred Ccc----CcCEEEECCCh----hhcceEEeccCCCCCcCCCCCeEEEEEecccc-cc-ccc-hHHHHHHHHHHHHHhCCC
Confidence 743 34566665543 35777888998899999999998877664322 11 122 245679999999999953
Q ss_pred CCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCC---CChHHHHHHHHHHHHHHH
Q 013082 366 EGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGG---LSVGKSIASGCKAAELVI 432 (450)
Q Consensus 366 ~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g---~~~~~ai~SG~~aA~~i~ 432 (450)
..++...+++|+.++|+|.+|+.... ....+++|||+||||+.+ .++++|+.||++||++|+
T Consensus 360 -~~~~~~~v~~~~~~~P~~~~~~~~~~----~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 360 -KRYEVLLIQSYHDEWPVNRAASGTDP----GNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp -CCEEEEEEEEEBTTBCSBSSCTTCCC----CSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred -CceEEEEEEEECCCccccccccCCCC----CCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence 34555688899999999999965321 123456799999999854 789999999999999886
No 10
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.98 E-value=7.3e-32 Score=274.70 Aligned_cols=384 Identities=13% Similarity=0.082 Sum_probs=253.0
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCcccccc---CCCCceEEEEC--CEEeecCCC-h
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFP---ISQYKRYVVRN--GVPFLIPTN-P 74 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~---~~~~~~~~~~~--G~~~~~p~~-~ 74 (450)
+|||+++|+|||++|.+.+|+.+|+|+|+++..++.+.++++++|+.+.+... ......|++.+ |+.+.+|.. .
T Consensus 66 ~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (495)
T 2vvm_A 66 LLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAE 145 (495)
T ss_dssp EEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHHH
T ss_pred EEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHHHH
Confidence 58999999999999999999999999999988789999999999997655432 12234666666 666666542 1
Q ss_pred hHhhhcccCChhHHHH----Hhccccc--cccCCcccccCCCcCCcHHHHHHHhh--cHHHHHHHhhhhhcccccCCccc
Q 013082 75 IALLTSNFLSAQSKFQ----IILEPFL--WKKSDSAKVSAEDAKESVGGFFQRHF--GREVVDFLIDPFVAGTSAGDPES 146 (450)
Q Consensus 75 ~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~~~~l~~p~~~~~~~~~~~~ 146 (450)
...+.. .+ ....+ .....+. ........ ....+++|+.+|+++.. ..+..+.++.+++..+++.++++
T Consensus 146 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (495)
T 2vvm_A 146 DELLRS-AL--HKFTNVDGTNGRTVLPFPHDMFYVPE-FRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLEN 221 (495)
T ss_dssp HHHHHH-HH--HHHHCSSSSTTTTTCSCTTSTTSSTT-HHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHHHHH-HH--HHHHccchhhhhhcCCCCCCcccCcc-hhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcch
Confidence 111110 00 00000 0000000 00000000 01246889999998864 23456789999999999999999
Q ss_pred chhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----c-------
Q 013082 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D------- 215 (450)
Q Consensus 147 ~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~------- 215 (450)
+|+.+++..+.. ..++. .+.. ...+.++++||++++++++.. .
T Consensus 222 ~s~~~~~~~~~~---~~~~~-~~~~----------------------~~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~ 275 (495)
T 2vvm_A 222 SSFGEFLHWWAM---SGYTY-QGCM----------------------DCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVF 275 (495)
T ss_dssp SBHHHHHHHHHH---TTSSH-HHHH----------------------HHHHSEEETTCHHHHHHHHHHHHHTTTCEEEES
T ss_pred hhHHHHHHHHHH---cCCCH-HHHH----------------------hhhceEEeCCCHHHHHHHHHHHhhhcCceEEEe
Confidence 998876544321 11111 1110 012357899999999877642 1
Q ss_pred CC------ccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCC-CcCCCCCCCCCCCeEEEEEEecCCCC
Q 013082 216 GR------SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENV 288 (450)
Q Consensus 216 ~~------~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p-~~~~~l~~~~y~~~~~v~l~~~~~~~ 288 (450)
+. ..++++.|++.+|. ++.||+||+|+|++++.+|+ +.|..| ...+.++.+.|.++.+|++.|++++|
T Consensus 276 ~~~V~~i~~~~~~v~v~~~~g~----~~~ad~vI~a~~~~~l~~i~-~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~~ 350 (495)
T 2vvm_A 276 GCPVRSVVNERDAARVTARDGR----EFVAKRVVCTIPLNVLSTIQ-FSPALSTERISAMQAGHVSMCTKVHAEVDNKDM 350 (495)
T ss_dssp SCCEEEEEECSSSEEEEETTCC----EEEEEEEEECCCGGGGGGSE-EESCCCHHHHHHHHHCCCCCCEEEEEEESCGGG
T ss_pred CCEEEEEEEcCCEEEEEECCCC----EEEcCEEEECCCHHHHhhee-eCCCCCHHHHHHHHhcCCCceeEEEEEECCccC
Confidence 11 12456888888774 78999999999999999986 444444 34566778899999999999998765
Q ss_pred CCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCC
Q 013082 289 RRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGD 368 (450)
Q Consensus 289 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~ 368 (450)
. ...|+..+ +. ++ ..+|++.. .|++..+|+++++.. .. +++++..+.++++|+++++...+
T Consensus 351 ~---~~~g~~~~-~~-----~~-~~~~~~~~----~~~~~~vl~~~~~~~--~~---~~~~e~~~~~~~~L~~~~~~~~~ 411 (495)
T 2vvm_A 351 R---SWTGIAYP-FN-----KL-CYAIGDGT----TPAGNTHLVCFGNSA--NH---IQPDEDVRETLKAVGQLAPGTFG 411 (495)
T ss_dssp G---GEEEEECS-SC-----SS-CEEEEEEE----CTTSCEEEEEEECST--TC---CCTTTCHHHHHHHHHTTSTTSCC
T ss_pred C---CceeEecC-CC-----Cc-EEEecCCC----CCCCCeEEEEEeCcc--cc---CCCHHHHHHHHHHHHHhcCCCCC
Confidence 2 22233322 21 22 23454322 345567777776432 11 35556778899999998754357
Q ss_pred CceEEeeccC------CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 369 PAFVNHFFWS------KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG---GLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 369 p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
|..+.+++|. ++++.+.+|+.... ...+.++.++|||||+++. ...+|||+.||.+||++|++.+....
T Consensus 412 ~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~--~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~~~ 489 (495)
T 2vvm_A 412 VKRLVFHNWVKDEFAKGAWFFSRPGMVSEC--LQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTKR 489 (495)
T ss_dssp EEEEEECCTTTCTTTSSSSCCCCTTHHHHH--HHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred ceEEEEeEcCCCCCCCCCccCcCCCcchhh--HHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhcccc
Confidence 8888999994 57888889986421 2234566789999999974 24599999999999999999886554
Q ss_pred h
Q 013082 440 D 440 (450)
Q Consensus 440 ~ 440 (450)
.
T Consensus 490 ~ 490 (495)
T 2vvm_A 490 E 490 (495)
T ss_dssp -
T ss_pred C
Confidence 3
No 11
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.97 E-value=4.4e-32 Score=273.23 Aligned_cols=385 Identities=14% Similarity=0.164 Sum_probs=251.5
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEEC-CEEeecCC-----Ch
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-GVPFLIPT-----NP 74 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~-G~~~~~p~-----~~ 74 (450)
+|||+++++||+++|.+.+|+.+|.|++++...++.+.++++++|+....... .....++.+ |+.+.++. ++
T Consensus 32 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~ 109 (453)
T 2yg5_A 32 AVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYR--EGESVYISSAGERTRYTGDSFPTNE 109 (453)
T ss_dssp EEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEECCC--CSEEEEECTTSCEEEECSSSCSCCH
T ss_pred EEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCccccccc--CCCEEEEeCCCceeeccCCCCCCCh
Confidence 58999999999999999899999999999887678899999999997543332 222222333 65544421 22
Q ss_pred hHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcc-cchhhccc
Q 013082 75 IALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPE-SLVMRHSF 153 (450)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~-~~Sa~~~~ 153 (450)
..... +......+..+...+..............+++|+.+|++++++++.++.++.+++.+.|+.+++ ++|+.+++
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 187 (453)
T 2yg5_A 110 TTKKE--MDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAV 187 (453)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHH
T ss_pred hhHHH--HHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHH
Confidence 11110 0000001111111010000000000012468999999999888888888999999999999999 99987764
Q ss_pred hhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------CC------ccC
Q 013082 154 PELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------GR------SAL 220 (450)
Q Consensus 154 ~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~~------~~~ 220 (450)
..+ ...++... +... .+...++++||+++|+++++.. +. ..+
T Consensus 188 ~~~----~~~g~~~~-~~~~--------------------~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~ 242 (453)
T 2yg5_A 188 LMA----ASAGSFSH-LVDE--------------------DFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNE 242 (453)
T ss_dssp HHH----HHTTCHHH-HHCH--------------------HHHTCEEETTCTHHHHHHHHHHHGGGEECSCCEEEEEEET
T ss_pred HHh----ccCCcHhh-hccC--------------------CCcceEEEcCChHHHHHHHHHhcCCcEEcCCceEEEEEeC
Confidence 432 22333211 1000 0112468999999999877521 11 124
Q ss_pred CC-eEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCe-eE
Q 013082 221 EN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGF-GV 297 (450)
Q Consensus 221 ~~-~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~-g~ 297 (450)
++ |.|++ +|. ++.||+||+|+|++++.+|+ +.+..|+ ..+.+++++|.++.+|++.|++++|+. .++ +.
T Consensus 243 ~~~v~v~~-~~~----~~~ad~VI~a~p~~~~~~l~-~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~--~~~~g~ 314 (453)
T 2yg5_A 243 SGATVLAD-GDI----RVEASRVILAVPPNLYSRIS-YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRE--DGLSGT 314 (453)
T ss_dssp TEEEEEET-TTE----EEEEEEEEECSCGGGGGGSE-EESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGG--GTEEEE
T ss_pred CceEEEEE-CCe----EEEcCEEEEcCCHHHHhcCE-eCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCC--CCCCce
Confidence 45 77775 443 78999999999999999986 4444443 456788899999999999999887742 223 34
Q ss_pred EecCCCCCCCCceEEEEeccCCCCCCCCCC-cEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC-CCCceEEee
Q 013082 298 LVPSKEQQNGLKTLGTLFSSMMFPDRVPKD-LYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE-GDPAFVNHF 375 (450)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g-~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~-~~p~~~~v~ 375 (450)
+++... ....+|+++ .|++ ..+|++++.+..+..|.+++++++.+.++++|+++++.. .+|.++.++
T Consensus 315 ~~~~~~------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~ 383 (453)
T 2yg5_A 315 GFGASE------VVQEVYDNT-----NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYES 383 (453)
T ss_dssp EECTTS------SSCEEEECC-----CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGGCCSEEEEC
T ss_pred eecCCC------CeEEEEeCC-----CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCCCccEEEEe
Confidence 443322 123456654 2333 457778876544445667789999999999999999754 478888999
Q ss_pred ccCC------CC-CCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC--C-CChHHHHHHHHHHHHHHHHHh
Q 013082 376 FWSK------AF-PLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG--G-LSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 376 ~w~~------a~-p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~--g-~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+|.. ++ +.+.+|+..... ..+.++.+||||||+++. + .+++||+.||.+||++|++.+
T Consensus 384 ~W~~~~~~~G~~~~~~~~g~~~~~~--~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 451 (453)
T 2yg5_A 384 DWGSEEWTRGCYAASFDLGGLHRYG--ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARS 451 (453)
T ss_dssp CTTTCTTTCSSSCEEECTTHHHHHG--GGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCCCCCcCcCCCCccccch--HHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHHHh
Confidence 9952 22 345677543211 123456789999999962 2 259999999999999999876
No 12
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.97 E-value=1.1e-30 Score=260.42 Aligned_cols=362 Identities=13% Similarity=0.062 Sum_probs=243.6
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc--ChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~--~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~ 78 (450)
+|||+++++||+++|++.+|+.+|.|++++.. .++.+.++++++|+...+..... . ..++.+|+.+.+|...
T Consensus 27 ~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~-~-~~~~~~g~~~~~~~~~---- 100 (421)
T 3nrn_A 27 IVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSNP-K-GKILWEGKIFHYRESW---- 100 (421)
T ss_dssp EEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEECSS-S-CEEEETTEEEEGGGGG----
T ss_pred EEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEECCC-C-eEEEECCEEEEcCCch----
Confidence 58999999999999999999999999987764 35688999999999765543222 2 3345689888776422
Q ss_pred hcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHh-hcHHHHHHHhhhhhcccccCCcccchhhccchhHH
Q 013082 79 TSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-FGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELW 157 (450)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~ 157 (450)
..+++.++.++........... ...++.|+.+|+.++ ++.+.++.++.|++..+++.++.++|+.++++.+.
T Consensus 101 --~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (421)
T 3nrn_A 101 --KFLSVKEKAKALKLLAEIRMNK-----LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIR 173 (421)
T ss_dssp --GGCC--------CCHHHHHTTC-----CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHH
T ss_pred --hhCCHhHHHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 2244444444433221111100 123568999999998 88889999999999999999999999987766554
Q ss_pred HHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----------cCC------ccCC
Q 013082 158 NLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----------DGR------SALE 221 (450)
Q Consensus 158 ~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----------~~~------~~~~ 221 (450)
.+.. ..+.++++||++.+++++.. .+. ..++
T Consensus 174 ~~~~---------------------------------~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~ 220 (421)
T 3nrn_A 174 AALR---------------------------------WGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEK 220 (421)
T ss_dssp HHHH---------------------------------HCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTT
T ss_pred HHhh---------------------------------cCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECC
Confidence 3210 12346899999999888752 111 1234
Q ss_pred CeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecC
Q 013082 222 NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPS 301 (450)
Q Consensus 222 ~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~ 301 (450)
+| |+ .+|+ ++.||+||+|+|+..+.+|+..+..++...+.+.+++|.++.+|++.++++.+ ..++++++.
T Consensus 221 ~v-V~-~~g~----~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~----~~~~~~~~~ 290 (421)
T 3nrn_A 221 KV-YT-RDNE----EYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPR----IGNTIVFTP 290 (421)
T ss_dssp EE-EE-TTCC----EEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSCS----SCSSEEECT
T ss_pred EE-EE-eCCc----EEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCcc----cCCeEEEcC
Confidence 56 54 4443 79999999999999999997211233334456678889999999999998742 245566665
Q ss_pred CCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCC
Q 013082 302 KEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAF 381 (450)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~ 381 (450)
+. . +.++.+.|...|..+|+|+.++.++..- ...+.++.++.++++|+++++ .. ....+++|..++
T Consensus 291 ~~----~-~~~i~~~s~~~p~~ap~G~~~~~~~~~~------~~~~~~~~~~~~~~~L~~~~p-~~--~~~~~~~~~~~~ 356 (421)
T 3nrn_A 291 GL----M-INGFNEPSALDKSLAREGYTLIMAHMAL------KNGNVKKAIEKGWEELLEIFP-EG--EPLLAQVYRDGN 356 (421)
T ss_dssp TS----S-SCEEECGGGTCGGGSCTTEEEEEEEEEC------TTCCHHHHHHHHHHHHHHHCT-TC--EEEEEEEC----
T ss_pred Cc----c-eeeEeccCCCCCCcCCCCceEEEEEEee------ccccHHHHHHHHHHHHHHHcC-CC--eEEEeeeccCCC
Confidence 44 2 6677888888888899998877665421 123445669999999999998 33 345677899999
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCC-Ch--HHHHHHHHHHHHHHHHHhcccch
Q 013082 382 PLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGL-SV--GKSIASGCKAAELVISYLEKSSD 440 (450)
Q Consensus 382 p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~-~~--~~ai~SG~~aA~~i~~~~~~~~~ 440 (450)
|++....... ++ .++ +|||+||||+.+. ++ ++|+.||.+||+.| .+.+-++
T Consensus 357 p~~~~~~~~~---~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l--~~~~~~~ 410 (421)
T 3nrn_A 357 PVNRTRAGLH---IE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL--NLGSFSE 410 (421)
T ss_dssp ---------C---CC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT--TSCCCCT
T ss_pred CcccccCCCC---CC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh--CcCchhh
Confidence 9874332221 22 356 8999999998766 56 99999999999999 5555444
No 13
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.95 E-value=7e-30 Score=259.66 Aligned_cols=394 Identities=13% Similarity=0.130 Sum_probs=233.2
Q ss_pred CeeccCCCCCeeEEEEec-----------------CcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEE-
Q 013082 1 MVFEADERAGGKLRSISK-----------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVV- 62 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~-----------------~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~- 62 (450)
+|||+++++|||++|.+. +|+.+|.|++++...+ .+.++++++|+...... ......|++
T Consensus 38 ~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~ 115 (489)
T 2jae_A 38 TVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-ITLDYCRELGVEIQGFG-NQNANTFVNY 115 (489)
T ss_dssp EEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-THHHHHHHHTCCEEEEC-CCCTTSEEEC
T ss_pred EEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-HHHHHHHHcCCceEEcc-ccCCCceEEe
Confidence 589999999999999875 5789999999998776 89999999999754322 222346666
Q ss_pred EC-----CEEeecCCChhHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhc
Q 013082 63 RN-----GVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVA 137 (450)
Q Consensus 63 ~~-----G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~ 137 (450)
.+ |+.+.+|.....+.. .+ .+-++..... ...+. . ....+++|+.+|+++ +++...+..+.+...
T Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~--~~--~~l~~~~~~~---~~~~~-~-~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 185 (489)
T 2jae_A 116 QSDTSLSGQSVTYRAAKADTFG--YM--SELLKKATDQ---GALDQ-V-LSREDKDALSEFLSD-FGDLSDDGRYLGSSR 185 (489)
T ss_dssp CCSSTTTTCCEEHHHHHHHHHH--HH--HHHHHHHHHH---TTTTT-T-SCHHHHHHHHHHHHH-HTTCCTTSCCCCCGG
T ss_pred cCCcccCCccccHHHHhhhhhc--cH--HHHHHHHHhc---ccccc-c-cchhhHHHHHHHHHH-hhhhhhccccccccc
Confidence 55 765554422111110 00 0000000000 00000 0 011345699999986 554332223333333
Q ss_pred ccccCCcccchhhcc---chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc
Q 013082 138 GTSAGDPESLVMRHS---FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH 214 (450)
Q Consensus 138 ~~~~~~~~~~Sa~~~---~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 214 (450)
..|..++........ ...+... ..+.+....... . . .......++++||+++|+++|+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~-------~----~~~~~~~~~~~gG~~~l~~~l~~ 247 (489)
T 2jae_A 186 RGYDSEPGAGLNFGTEKKPFAMQEV---IRSGIGRNFSFD----F-------G----YDQAMMMFTPVGGMDRIYYAFQD 247 (489)
T ss_dssp GCEEECCCBTTCCCEECCCCCHHHH---HHHTTTTTGGGG----G-------C----TTTSSSEEEETTCTTHHHHHHHH
T ss_pred hhhccCCCcccccCCCCCCcCHHHH---hhhhHHHHHhhh----h-------c----cccCccEEeecCCHHHHHHHHHH
Confidence 333322211100000 0011110 000000000000 0 0 01134567999999999987752
Q ss_pred c--------CC------ccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEE
Q 013082 215 D--------GR------SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVII 280 (450)
Q Consensus 215 ~--------~~------~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~ 280 (450)
. +. ..+++|.|++.+|. ..+++.||+||+|+|++++..|+ .+.++...+.+++++|.++.+|+
T Consensus 248 ~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~-~~~~~~ad~vI~a~p~~~l~~l~--~~l~~~~~~~l~~~~~~~~~kv~ 324 (489)
T 2jae_A 248 RIGTDNIVFGAEVTSMKNVSEGVTVEYTAGG-SKKSITADYAICTIPPHLVGRLQ--NNLPGDVLTALKAAKPSSSGKLG 324 (489)
T ss_dssp HHCGGGEETTCEEEEEEEETTEEEEEEEETT-EEEEEEESEEEECSCHHHHTTSE--ECCCHHHHHHHHTEECCCEEEEE
T ss_pred hcCCCeEEECCEEEEEEEcCCeEEEEEecCC-eEEEEECCEEEECCCHHHHHhCc--cCCCHHHHHHHHhCCCccceEEE
Confidence 1 11 23566888877652 12378999999999999999986 34444456778889999999999
Q ss_pred EEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHH
Q 013082 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLR 360 (450)
Q Consensus 281 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~ 360 (450)
+.|++++|+.....+|.+...+ .++..+.+++..++ .| ...++.+|+++..+..|..++++++++.++++|+
T Consensus 325 l~~~~~~w~~~~~~~g~~~~~~-----~~~~~~~~~s~~~~--~~-~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~~L~ 396 (489)
T 2jae_A 325 IEYSRRWWETEDRIYGGASNTD-----KDISQIMFPYDHYN--SD-RGVVVAYYSSGKRQEAFESLTHRQRLAKAIAEGS 396 (489)
T ss_dssp EEESSCHHHHTTCCCSCEEEES-----STTCEEECCSSSTT--SS-CEEEEEEEEETHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EEeCCCCccCCCCcccccccCC-----CCceEEEeCCCCCC--CC-CCEEEEEeeCCchhhhhhcCCHHHHHHHHHHHHH
Confidence 9999987753323454332221 24556666665442 23 2345556776655555667899999999999999
Q ss_pred HHhCC--CCCCceEEeeccCCC------CCCCC------CCHHHHHHHHHHHHhhCCCeEEecCCc--CCCChHHHHHHH
Q 013082 361 QLLGV--EGDPAFVNHFFWSKA------FPLYG------RDYDSVLEAIEKMETNLPGFFYAGNHR--GGLSVGKSIASG 424 (450)
Q Consensus 361 ~~~~~--~~~p~~~~v~~w~~a------~p~~~------~g~~~~~~~~~~~~~~~~~l~~aG~~~--~g~~~~~ai~SG 424 (450)
++++. ...|....+++|... ++.+. +|.... ....+.++.+||||||+++ .+.++++|+.||
T Consensus 397 ~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~faG~~~~~~~~~v~gAi~sg 474 (489)
T 2jae_A 397 EIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATP--EYEKLLEPVDKIYFAGDHLSNAIAWQHGALTSA 474 (489)
T ss_dssp HHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCH--HHHHHTSCBTTEEECSGGGBSSTTSHHHHHHHH
T ss_pred HHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchh--hHHHHhCCCCcEEEeEHHhccCccHHHHHHHHH
Confidence 99975 356777788899643 22222 222111 1123445667999999986 466799999999
Q ss_pred HHHHHHHHHHhcc
Q 013082 425 CKAAELVISYLEK 437 (450)
Q Consensus 425 ~~aA~~i~~~~~~ 437 (450)
.+||++|++.+..
T Consensus 475 ~~aA~~i~~~l~~ 487 (489)
T 2jae_A 475 RDVVTHIHERVAQ 487 (489)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987754
No 14
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.94 E-value=1.4e-26 Score=234.10 Aligned_cols=381 Identities=14% Similarity=0.166 Sum_probs=231.2
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCcccc----ChHHHHHHHHH-cCCCccccccCCCCceEEEE-CCEEeecCCCh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE----SEMEVKGLLDD-LGIREKQQFPISQYKRYVVR-NGVPFLIPTNP 74 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~----~~~~~~~l~~~-lGl~~~~~~~~~~~~~~~~~-~G~~~~~p~~~ 74 (450)
+|||+++++||+++|.+.+|+.+|.|+++++. ..+.+.+++++ +|+....... .....+++. +|+.++.+. .
T Consensus 32 ~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~-~ 109 (472)
T 1b37_A 32 LILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDF-DYLAQNVYKEDGGVYDEDY-V 109 (472)
T ss_dssp EEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCEEECCC-TTGGGCEECSSSSBCCHHH-H
T ss_pred EEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCceeeccC-ccccceeEcCCCCCCCHHH-H
Confidence 58999999999999999999999999999972 34578999999 9997532211 112233443 676543321 1
Q ss_pred hHhhhcccCChhHHHHHhccccccccCCcccccCCCcCCcHHH--HHHHhhc---HHHHHHHhhhhhc-ccccCCcccch
Q 013082 75 IALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGG--FFQRHFG---REVVDFLIDPFVA-GTSAGDPESLV 148 (450)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l~~~~~---~~~~~~l~~p~~~-~~~~~~~~~~S 148 (450)
...+. ....+.-..+.+. ..... ...++.|+.+ ++.+... ....+.++++++. ..++.+++.+|
T Consensus 110 ~~~~~-----~~~~~~~~~~~~~-~~~~~----~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 179 (472)
T 1b37_A 110 QKRIE-----LADSVEEMGEKLS-ATLHA----SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 179 (472)
T ss_dssp HHHHH-----HHHHHHHHHHHHH-HTSCT----TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBB
T ss_pred HHHHH-----HHHHHHHHHHHHH-Hhhcc----ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccc
Confidence 11110 0000100001010 00000 1245667654 5544331 1123455666553 34566777777
Q ss_pred hhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------------
Q 013082 149 MRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD------------- 215 (450)
Q Consensus 149 a~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------------- 215 (450)
+..+++.. .+... .....+..++||+++|+++|+..
T Consensus 180 ~~~~~~~~------------~~~~~-------------------~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~ 228 (472)
T 1b37_A 180 LQNTVPLA------------TFSDF-------------------GDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVD 228 (472)
T ss_dssp STTTSSCH------------HHHHH-------------------CSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCC
T ss_pred hhhccccc------------ccccc-------------------CCceeeeecCCcHHHHHHHHHHhccccccccccccc
Confidence 54433211 00000 00111124589999998776421
Q ss_pred -----CC------ccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhh-hccCCCCC-cCCCCCCCCCCCeEEEEEE
Q 013082 216 -----GR------SALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMK-ITKGGNLF-PLDFLPEVIYMPLSVIITT 282 (450)
Q Consensus 216 -----~~------~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll-~~~~~~p~-~~~~l~~~~y~~~~~v~l~ 282 (450)
+. ..++++.|++.+|. +++||+||+|+|+.+++.++ .+.|..|+ ..+.+++++|.++.+|++.
T Consensus 229 ~~i~~~~~V~~i~~~~~~v~v~~~~g~----~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~ 304 (472)
T 1b37_A 229 PRLQLNKVVREIKYSPGGVTVKTEDNS----VYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLK 304 (472)
T ss_dssp TTEESSCCEEEEEECSSCEEEEETTSC----EEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEE
T ss_pred cEEEcCCEEEEEEEcCCcEEEEECCCC----EEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEE
Confidence 11 12456888888874 79999999999999999864 12333333 4567788899999999999
Q ss_pred ecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 013082 283 FKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQL 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~ 362 (450)
|++++|+.. .+.++++....+ ..... +|.+ +....| +..+|++++.+..+..|..++++++.+.++++|+++
T Consensus 305 ~~~~~w~~~-~~~~~~~~~~~~---~~~~~-~~~~--~~~~~p-~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~ 376 (472)
T 1b37_A 305 FPRKFWPEG-KGREFFLYASSR---RGYYG-VWQE--FEKQYP-DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKM 376 (472)
T ss_dssp CSSCCSCCS-TTCSEEEECCSS---TTSSC-EEEE--CTTTST-TCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCC-CCcceEEecccC---Cccce-eeec--ccCCCC-CCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999988642 234444432221 11111 2221 111123 334565566543223455679999999999999999
Q ss_pred h-CCC-CCCceEEeecc------CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC---CCChHHHHHHHHHHHHHH
Q 013082 363 L-GVE-GDPAFVNHFFW------SKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG---GLSVGKSIASGCKAAELV 431 (450)
Q Consensus 363 ~-~~~-~~p~~~~v~~w------~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i 431 (450)
+ |.. .+|+.+.+++| .++++.+.+|+... ....+.++++||||||+++. +.+++||+.||.+||++|
T Consensus 377 ~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~--~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i 454 (472)
T 1b37_A 377 FPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY--EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEIL 454 (472)
T ss_dssp CTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHH--HHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChh--HHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHH
Confidence 9 654 57788888999 55666677776532 12234567889999999973 346999999999999999
Q ss_pred HHHhccc
Q 013082 432 ISYLEKS 438 (450)
Q Consensus 432 ~~~~~~~ 438 (450)
++.+...
T Consensus 455 ~~~l~~~ 461 (472)
T 1b37_A 455 INCAQKK 461 (472)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9887543
No 15
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.94 E-value=1.3e-26 Score=236.19 Aligned_cols=387 Identities=16% Similarity=0.127 Sum_probs=227.0
Q ss_pred CeeccCCCCCeeEEEEe--cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCC---Chh
Q 013082 1 MVFEADERAGGKLRSIS--KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT---NPI 75 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~--~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~---~~~ 75 (450)
+|||+++++|||++|.+ ..|+.+|.|++++...++.+.++++++|+...... ......+++.+|.....+. .+.
T Consensus 60 ~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (498)
T 2iid_A 60 TVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFS-QENDNAWYFIKNIRKKVGEVKKDPG 138 (498)
T ss_dssp EEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEEEEC-SCCTTSEEEETTEEEEHHHHHHCGG
T ss_pred EEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCceeec-ccCCccEEEeCCeeecccccccCcc
Confidence 58999999999999988 57999999999998777889999999999643221 2223455667776443210 000
Q ss_pred Hhhhccc------CChhHHHHHhcccccc--ccCCcccccCCCcCCcHHHHHHHhh--cHHHHHHHhhhhhcccccCCcc
Q 013082 76 ALLTSNF------LSAQSKFQIILEPFLW--KKSDSAKVSAEDAKESVGGFFQRHF--GREVVDFLIDPFVAGTSAGDPE 145 (450)
Q Consensus 76 ~~~~~~~------l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~~~~l~~p~~~~~~~~~~~ 145 (450)
.+...+ ....+.+......+.. ............++.|+.+|+++.. +....+ ++..++......
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--- 213 (498)
T 2iid_A 139 -LLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVD-MIGDLLNEDSGY--- 213 (498)
T ss_dssp -GGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHH-HHHHHTTCGGGT---
T ss_pred -ccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHHHHHHHccCCCHHHHH-HHHHhcCcccch---
Confidence 000000 0001111000000000 0000000001235689999998742 344433 222222110000
Q ss_pred cchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------C--
Q 013082 146 SLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G-- 216 (450)
Q Consensus 146 ~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~-- 216 (450)
..+ ....+. ..... ......++++||+++|+++|+.. +
T Consensus 214 ~~~---~~~~~~-----------~~~~~-------------------~~~~~~~~~~gG~~~l~~~l~~~l~~~i~~~~~ 260 (498)
T 2iid_A 214 YVS---FIESLK-----------HDDIF-------------------AYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQ 260 (498)
T ss_dssp TSB---HHHHHH-----------HHHHH-------------------TTCCCEEEETTCTTHHHHHHHHHTGGGEESSCE
T ss_pred hHH---HHHHHH-----------HHhcc-------------------ccCcceEEeCCcHHHHHHHHHHhcccccccCCE
Confidence 000 000000 00000 01234568999999998877521 1
Q ss_pred ----CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCC-CcCCCCCCCCCCCeEEEEEEecCCCCCCC
Q 013082 217 ----RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRP 291 (450)
Q Consensus 217 ----~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p-~~~~~l~~~~y~~~~~v~l~~~~~~~~~~ 291 (450)
...+++|.|++.+|+....+++||+||+|+|+..+..+. +.|..| ...+++++++|.++.+|++.|++++|+..
T Consensus 261 V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~-f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~ 339 (498)
T 2iid_A 261 VIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIK-FNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDD 339 (498)
T ss_dssp EEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSE-EESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGG
T ss_pred EEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhhee-cCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCC
Confidence 123567888887764212247999999999999998886 344344 45677889999999999999999988531
Q ss_pred CCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCC---
Q 013082 292 LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGD--- 368 (450)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~--- 368 (450)
..++.+...+ .+...+.|.+.. .|++..+|.+++.+..+..+..++++++.+.++++|++++++...
T Consensus 340 -~~~~~~~~~~-----~~~~~~~~~s~~----~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~ 409 (498)
T 2iid_A 340 -GIHGGKSTTD-----LPSRFIYYPNHN----FTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQ 409 (498)
T ss_dssp -TCCSSEEEES-----STTCEEECCSSC----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred -CccCCcccCC-----CCcceEEECCCC----CCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhhh
Confidence 1112111111 122344555432 355566777777654445566789999999999999999986421
Q ss_pred --CceEEeeccCC------CCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC--CCChHHHHHHHHHHHHHHHHHhccc
Q 013082 369 --PAFVNHFFWSK------AFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG--GLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 369 --p~~~~v~~w~~------a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~--g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..+.+++|.. ++..+.++..... ...+.++.++|||||+++. ..+++||+.||.+||++|++.+..+
T Consensus 410 ~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~--~~~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~~~ 487 (498)
T 2iid_A 410 SFCYPSVIQKWSLDKYAMGGITTFTPYQFQHF--SDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASENP 487 (498)
T ss_dssp HHEEEEEEEEGGGCTTTCSSEECCCTTHHHHH--HHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhcCccEEEecCCCCCCCceeeecCCcchHHH--HHHHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 12367789964 2222333433211 1234556789999999972 2359999999999999999988655
Q ss_pred c
Q 013082 439 S 439 (450)
Q Consensus 439 ~ 439 (450)
+
T Consensus 488 ~ 488 (498)
T 2iid_A 488 S 488 (498)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.7e-25 Score=221.00 Aligned_cols=333 Identities=12% Similarity=0.113 Sum_probs=215.6
Q ss_pred CeeccCCCCCeeEEEEec--CcEEE-ccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISK--DGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~--~g~~~-D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+|||+++++||+++|.+. +|+.+ |.|+|+|+..++.+.++++++|+-. .+ ....+++.+|+.+++|.++..+
T Consensus 35 ~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~~~~~~G~~~~~p~~~~~~ 109 (399)
T 1v0j_A 35 LVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDFT--DY---RHRVFAMHNGQAYQFPMGLGLV 109 (399)
T ss_dssp EEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCCBC--CC---CCCEEEEETTEEEEESSSHHHH
T ss_pred EEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhhhh--cc---ccceEEEECCEEEeCCCCHHHH
Confidence 589999999999999987 79988 5999999988899999999999732 11 2245677899999999875332
Q ss_pred hhc--ccCChhHHHH-HhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhcc--
Q 013082 78 LTS--NFLSAQSKFQ-IILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS-- 152 (450)
Q Consensus 78 ~~~--~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~-- 152 (450)
... ..+.+ ++++ ++.+.+. .. ...+++|+++|+.+++|++++++++.|++.++|+.+++++|+.++
T Consensus 110 ~~l~~~~~~~-~~~~~~l~~~~~--~~------~~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~ 180 (399)
T 1v0j_A 110 SQFFGKYFTP-EQARQLIAEQAA--EI------DTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITR 180 (399)
T ss_dssp HHHHTSCCCH-HHHHHHHHHHGG--GS------CTTC----CCHHHHHHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSC
T ss_pred HHHhcccCCH-HHHHHHHHHHhh--cc------CCCCcccHHHHHHHHHhHHHHHHHHHHHHHhhcCCChhhcChHhhhc
Confidence 211 11122 3333 3333221 11 124678999999999999999999999999999999999998876
Q ss_pred chhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccc-eEeccchHHHHHhccccCCccCCCeEEEecCCC
Q 013082 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS-FSFLGGMQVLSLSYSHDGRSALENWSLCSSNQE 231 (450)
Q Consensus 153 ~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~~~~~~~~~~v~~~~g~ 231 (450)
++.... . + . ....... .+++||+++|+++|+.. .+..|.++..-
T Consensus 181 ~~~~~~----~------------~---------~-----~~~~~~~~~~p~gG~~~l~~~l~~~-----~g~~I~l~~~V 225 (399)
T 1v0j_A 181 LPVRYT----F------------D---------N-----RYFSDTYEGLPTDGYTAWLQNMAAD-----HRIEVRLNTDW 225 (399)
T ss_dssp CCCCSS----S------------C---------C-----CSCCCSEEECBTTHHHHHHHHHTCS-----TTEEEECSCCH
T ss_pred ceeEec----c------------c---------c-----chhhhhhcccccccHHHHHHHHHhc-----CCeEEEECCch
Confidence 221000 0 0 0 0001112 27899999999998742 12344433221
Q ss_pred ccc----cce-ecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCC
Q 013082 232 KQS----LGL-SFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQN 306 (450)
Q Consensus 232 ~~~----~~~-~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~ 306 (450)
... ..+ .||+||+|+|++++.++. +..++|.++.++.+.++.+.++ ....+++++.+
T Consensus 226 ~~I~~~v~~~~~aD~VI~t~p~~~l~~~~------------l~~l~y~s~~~~~~~~~~~~~~---~~~~~~~~~~~--- 287 (399)
T 1v0j_A 226 FDVRGQLRPGSPAAPVVYTGPLDRYFDYA------------EGRLGWRTLDFEVEVLPIGDFQ---GTAVMNYNDLD--- 287 (399)
T ss_dssp HHHHHHHTTTSTTCCEEECSCHHHHTTTT------------TCCCCEEEEEEEEEEESSSCSS---SSSEEEECCTT---
T ss_pred hhhhhhhhhcccCCEEEECCcHHHHHhhh------------hCCCCcceEEEEEEEEccccCC---CCeEEEeCCCC---
Confidence 000 134 799999999999988763 3468999999999999765422 11234555432
Q ss_pred CCceEEEEeccCCCCCCC-CCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCC
Q 013082 307 GLKTLGTLFSSMMFPDRV-PKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYG 385 (450)
Q Consensus 307 ~~~~~~~~~~s~~~~~~~-p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~ 385 (450)
.+...+++.++..|... |+++.+++...... |. + .. ...+|.+.
T Consensus 288 -~~~~ri~~~~~~~~~~~~~~~~~~v~~e~~~~----~~------------------------~-----~~-~~~ypv~~ 332 (399)
T 1v0j_A 288 -VPYTRIHEFRHFHPERDYPTDKTVIMREYSRF----AE------------------------D-----DD-EPYYPINT 332 (399)
T ss_dssp -SSCSEEEEGGGGCTTSCCCSSCEEEEEEEEEE----CC------------------------T-----TS-CCCEECCC
T ss_pred -CCcceeEeecCCCCCCcCCCCCeEEEEeeccc----cc------------------------C-----CC-ccccccCc
Confidence 23344555555446554 44556665443211 10 0 01 12266666
Q ss_pred CCHHHHHHHHHHHHhhC---CCeEEecCC--cCCCChHHHHHHHHHHHHHHHHHh
Q 013082 386 RDYDSVLEAIEKMETNL---PGFFYAGNH--RGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 386 ~g~~~~~~~~~~~~~~~---~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
.++...++.++.+..+. +||+|||++ +.+.++|+||.||+++|++|.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~~~ 387 (399)
T 1v0j_A 333 EADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPH 387 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCEEEccceEEEEecCHHHHHHHHHHHHHHHhhhh
Confidence 67776666666555444 699999997 666789999999999999997543
No 17
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.94 E-value=7.5e-25 Score=215.05 Aligned_cols=333 Identities=14% Similarity=0.095 Sum_probs=222.3
Q ss_pred CeeccCCCCCeeEEEEec--CcEEE-ccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISK--DGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~--~g~~~-D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+|+|+++++||+++|.+. +|+.+ |.|+|+|+..++++.++++++|... .. . ...+++.+|+.+++|.+...+
T Consensus 30 ~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~~--~~--~-~~~~~~~~g~~~~~P~~~~~~ 104 (384)
T 2bi7_A 30 HIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEMM--PY--V-NRVKATVNGQVFSLPINLHTI 104 (384)
T ss_dssp EEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSCEE--EC--C-CCEEEEETTEEEEESCCHHHH
T ss_pred EEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhhhc--cc--c-cceEEEECCEEEECCCChhHH
Confidence 589999999999999987 79886 9999999988899999999998632 11 1 234567899999999876443
Q ss_pred hhc--ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccc--
Q 013082 78 LTS--NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSF-- 153 (450)
Q Consensus 78 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~-- 153 (450)
... ..+++.+..+++.+... . ...+++|+++|+.+++|++++++++.|++.++|+.+++++|+.++.
T Consensus 105 ~~l~~~~~~~~~~~~~l~~~~~--~-------~~~~~~sl~e~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~ 175 (384)
T 2bi7_A 105 NQFFSKTCSPDEARALIAEKGD--S-------TIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRL 175 (384)
T ss_dssp HHHTTCCCCHHHHHHHHHHHSC--C-------SCSSCCBHHHHHHHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSC
T ss_pred HHHhcccCCHHHHHHHHHHhhh--c-------cCCCCcCHHHHHHHhhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhcc
Confidence 211 11233322233333221 1 1246789999999999999999999999999999999999988752
Q ss_pred hhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccce--EeccchHHHHHhccccCCccCCCeEEEecCCC
Q 013082 154 PELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSF--SFLGGMQVLSLSYSHDGRSALENWSLCSSNQE 231 (450)
Q Consensus 154 ~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gG~~~l~~~l~~~~~~~~~~~~v~~~~g~ 231 (450)
+.... .. .....+.| +++||+++++++++.. .+..|.++..-
T Consensus 176 ~~~~~----~~---------------------------~~~~~~~~~~~p~gG~~~l~~~l~~~-----~g~~I~l~~~V 219 (384)
T 2bi7_A 176 PVRFN----YD---------------------------DNYFNHKFQGMPKCGYTQMIKSILNH-----ENIKVDLQREF 219 (384)
T ss_dssp CCCSS----SC---------------------------CCSCCCSEEEEETTHHHHHHHHHHCS-----TTEEEEESCCC
T ss_pred ccccc----cc---------------------------cccccccccEEECcCHHHHHHHHHhc-----CCCEEEECCee
Confidence 11000 00 00001123 8999999999999742 24556655431
Q ss_pred ccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceE
Q 013082 232 KQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTL 311 (450)
Q Consensus 232 ~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 311 (450)
...-...||+||+|+|++.+.+++ +.+++|.++..+++.++ +.++ ....+.+++.+ .+..
T Consensus 220 ~~~i~~~~d~VI~a~p~~~~~~~~------------lg~l~y~s~~~v~~~~d-~~~~---~~~~~n~~~~~----~~~~ 279 (384)
T 2bi7_A 220 IVEERTHYDHVFYSGPLDAFYGYQ------------YGRLGYRTLDFKKFTYQ-GDYQ---GCAVMNYCSVD----VPYT 279 (384)
T ss_dssp CGGGGGGSSEEEECSCHHHHTTTT------------TCCCCEEEEEEEEEEEE-SCSS---SSSEEEECSTT----SSSS
T ss_pred ehhhhccCCEEEEcCCHHHHHHhh------------cCCCCcceEEEEEEEeC-CCCC---CCEEEEecCCC----CCee
Confidence 100112499999999999988873 33689999999999997 4322 11223555432 2333
Q ss_pred EEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHH
Q 013082 312 GTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSV 391 (450)
Q Consensus 312 ~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~ 391 (450)
.+++.++..|...+ ++++++..... .|. + ..- ..||.++.++...
T Consensus 280 ri~~~~~~~~~~~~-~~~~v~~e~~~----~~~------------------------~-----~~~-p~ypv~~~~~~~~ 324 (384)
T 2bi7_A 280 RITEHKYFSPWEQH-DGSVCYKEYSR----ACE------------------------E-----NDI-PYYPIRQMGEMAL 324 (384)
T ss_dssp EEEEGGGGCTTSCC-SEEEEEEEEEE----ECC------------------------T-----TCC-CCEECCCHHHHHH
T ss_pred eEEEeeccCCCCCC-CCEEEEEEEec----ccc------------------------C-----CCc-cccccCChhHHHH
Confidence 45555544455543 44555543221 000 0 011 2367777788877
Q ss_pred HHHHHHHHhhCCCeEEecCC--cCCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 392 LEAIEKMETNLPGFFYAGNH--RGGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 392 ~~~~~~~~~~~~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
++.++.+....+||+|||.+ +.+.++|+||.||+++|++|++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~~~~~~ 373 (384)
T 2bi7_A 325 LEKYLSLAENETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLNSLTEN 373 (384)
T ss_dssp HHHHHHHHTTCSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEccccEEEEeCCHHHHHHHHHHHHHHHhhhhhcc
Confidence 77777666656899999987 567789999999999999998766443
No 18
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.93 E-value=1.2e-25 Score=229.95 Aligned_cols=375 Identities=13% Similarity=0.117 Sum_probs=208.3
Q ss_pred CeeccCCCCCeeEEEEec-CcEEEccCCCccccC-hHHHHHHHHHcCCCcccc-ccCCCCceEEEE-CCEEeecCCChhH
Q 013082 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQ-FPISQYKRYVVR-NGVPFLIPTNPIA 76 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~-~g~~~D~G~~~~~~~-~~~~~~l~~~lGl~~~~~-~~~~~~~~~~~~-~G~~~~~p~~~~~ 76 (450)
+||||++|+|||++|.+. +|+.+|+|+++++.. .+.+.+++.++|+.+... .....+..+.+. ++.. ++.....
T Consensus 36 ~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 113 (516)
T 1rsg_A 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGR--VDHDKEL 113 (516)
T ss_dssp EEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHCCCCEECCCCCCEEEETTTEE--CTTCTTT
T ss_pred EEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCcceeEEECCCCEEEEcCCCcc--ccccHHH
Confidence 589999999999999986 899999999999854 456888888888742110 000111122222 2221 1000000
Q ss_pred hhhcccCChhHHH-HHhccccccccCCcccccCCCcCCcHHHHHHHhhcHH------HHHHHhhhhh---cccccCCccc
Q 013082 77 LLTSNFLSAQSKF-QIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGRE------VVDFLIDPFV---AGTSAGDPES 146 (450)
Q Consensus 77 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~------~~~~l~~p~~---~~~~~~~~~~ 146 (450)
.+. .+ .+.+ ++....+. .. ...+++|+.+|+.+.++.. ....++.+++ ...++.++++
T Consensus 114 ~~~-~~---~~~~~~~~~~~~~-~~-------~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 181 (516)
T 1rsg_A 114 LLE-IV---DNEMSKFAELEFH-QH-------LGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKL 181 (516)
T ss_dssp CHH-HH---HHHHHHHHHHHC---------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTT
T ss_pred HHH-HH---HHHHHHHHHHHhh-hc-------cCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHH
Confidence 000 00 0011 11111111 11 1346789999998755431 1112222222 2334556666
Q ss_pred chhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc--------CC-
Q 013082 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR- 217 (450)
Q Consensus 147 ~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~- 217 (450)
+|+.+.+.. .....++.+| +++|+++|+.. +.
T Consensus 182 ~s~~~~~~~--------------------------------------~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~ 222 (516)
T 1rsg_A 182 LSAKDTYFG--------------------------------------HQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCE 222 (516)
T ss_dssp SBHHHHCCC--------------------------------------CSSCCEEESC-HHHHHHHHHTTSCGGGEETTCC
T ss_pred CChHHHHhh--------------------------------------ccCcchhhhC-HHHHHHHHHHhCCCCEEEECCE
Confidence 664432100 0011235566 99998877521 11
Q ss_pred -----cc-CCCeEEEecCCCccccceecCEEEEcCChhhhhhh----------hhccCCCC-CcCCCCCCCCCCCeEEEE
Q 013082 218 -----SA-LENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEM----------KITKGGNL-FPLDFLPEVIYMPLSVII 280 (450)
Q Consensus 218 -----~~-~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~l----------l~~~~~~p-~~~~~l~~~~y~~~~~v~ 280 (450)
.. ++++.|++.+|+ ++.||+||+|+|+.+++.. +.+.|..| .+.+++++++|.++.||+
T Consensus 223 V~~I~~~~~~~v~v~~~~g~----~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~ 298 (516)
T 1rsg_A 223 VKSITREPSKNVTVNCEDGT----VYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVI 298 (516)
T ss_dssp EEEEEECTTSCEEEEETTSC----EEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc----EEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEE
Confidence 12 346888888874 7999999999999999742 11333334 456789999999999999
Q ss_pred EEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEecc----------------------CCC--CC-----CCCCCcEEE
Q 013082 281 TTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSS----------------------MMF--PD-----RVPKDLYLY 331 (450)
Q Consensus 281 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s----------------------~~~--~~-----~~p~g~~~l 331 (450)
+.|++++|+.+...+..+....+ .+.. .++. ..| |. ..+.+..+|
T Consensus 299 l~f~~~fW~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 372 (516)
T 1rsg_A 299 FEFEECCWSNESSKIVTLANSTN-----EFVE-IVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASF 372 (516)
T ss_dssp EEESSCCSCCSCSEEEECCCCCH-----HHHH-HHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEE
T ss_pred EEeCCCCCCCCCCcEEEeCCCCc-----cchh-hcccCcccchhhhcccccccccccccccccCceeEEEeeecCCCcEE
Confidence 99999998644333433322110 0000 0000 001 10 012234467
Q ss_pred EEEeCCCCCCcCCCC--CHHHHHHH---HHHHHHHHhCC-------C-C-------CCc--eEEeeccC------CCCCC
Q 013082 332 TTFVGGSRNKELAKA--STDELKQI---VTSDLRQLLGV-------E-G-------DPA--FVNHFFWS------KAFPL 383 (450)
Q Consensus 332 ~~~~~~~~~~~~~~~--~~eel~~~---~~~~L~~~~~~-------~-~-------~p~--~~~v~~w~------~a~p~ 383 (450)
.+++.+..+..+..+ +++++.+. +++.|.+++|. . + .|. .+.+++|. ++|..
T Consensus 373 ~~~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~ 452 (516)
T 1rsg_A 373 MMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSA 452 (516)
T ss_dssp EEEECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCC
T ss_pred EEEecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCC
Confidence 788876544445555 88887654 66666666652 1 1 154 78888994 45555
Q ss_pred CCCCHHHHHHHHHHHH-hhCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 384 YGRDYDSVLEAIEKME-TNLPGFFYAGNHRG---GLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 384 ~~~g~~~~~~~~~~~~-~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
+.+|.... ...+.+. ++.++|||||+++. ...++||+.||.+||++|++.+...-
T Consensus 453 ~~~g~~~~-~~~~~l~~~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~~ 511 (516)
T 1rsg_A 453 CFPGDDPV-DMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLEH 511 (516)
T ss_dssp CBC----C-HHHHHHHHCSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCHH-HHHHHhccCCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhhh
Confidence 56666321 0112233 24568999999972 23489999999999999999876543
No 19
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.93 E-value=2.3e-26 Score=241.15 Aligned_cols=230 Identities=14% Similarity=0.186 Sum_probs=163.4
Q ss_pred cceEeccchHHHHHhcccc-----C------CccCCCeEEEecCC--CccccceecCEEEEcCChhhhhhhh---hccCC
Q 013082 197 GSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCSSNQ--EKQSLGLSFDAVIMTAPLCNVKEMK---ITKGG 260 (450)
Q Consensus 197 ~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~v~~~~g--~~~~~~~~ad~VI~t~P~~~~~~ll---~~~~~ 260 (450)
..+.++||+++|+++|+.. + ...+++|.|++.++ .+...+++||+||+|+|+.+++++. .|.|.
T Consensus 392 ~~~~~~gG~~~l~~~La~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~ 471 (662)
T 2z3y_A 392 SHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP 471 (662)
T ss_dssp CCEEETTCTTHHHHHHTTTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESC
T ss_pred ceeeecCcHHHHHHHHHhcCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCC
Confidence 4579999999999988631 1 12356788887651 0112479999999999999999841 13444
Q ss_pred CCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCC
Q 013082 261 NLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339 (450)
Q Consensus 261 ~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~ 339 (450)
.|+ ..+++++++|.++.+|+|.|++++|+.+...+|.+.+...+ .....++|++. +..+|++++.|..
T Consensus 472 LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~---~~~~~~~~~~~--------~~~vL~~~~~G~~ 540 (662)
T 2z3y_A 472 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTAS---RGELFLFWNLY--------KAPILLALVAGEA 540 (662)
T ss_dssp CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTT---TTEEEEEECCS--------SSSEEEEEECTHH
T ss_pred CCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCC---CCceeEEEeCC--------CCCEEEEEeccHh
Confidence 454 45678899999999999999999987555677877665431 34456666543 1237777887766
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHhCCC--CCCceEEeeccCC------CCCCCCCCHHHH-HHHHHH----------HHh
Q 013082 340 NKELAKASTDELKQIVTSDLRQLLGVE--GDPAFVNHFFWSK------AFPLYGRDYDSV-LEAIEK----------MET 400 (450)
Q Consensus 340 ~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~~w~~------a~p~~~~g~~~~-~~~~~~----------~~~ 400 (450)
+..+..++++++++.++++|++++|.. .+|..+.+++|.. +|..+.+|.... .+.+.. ..+
T Consensus 541 a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~ 620 (662)
T 2z3y_A 541 AGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQ 620 (662)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccC
Confidence 666778899999999999999999864 4788999999954 455555664321 111110 012
Q ss_pred hCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRG---GLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+.++|||||+++. ...+|||+.||.+||++|++.+..
T Consensus 621 ~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~g 660 (662)
T 2z3y_A 621 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG 660 (662)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHccC
Confidence 3368999999974 235999999999999999988754
No 20
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.93 E-value=9.4e-25 Score=213.13 Aligned_cols=327 Identities=12% Similarity=0.091 Sum_probs=216.4
Q ss_pred CeeccCCCCCeeEEEEecCcEEEc-cCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWD-EGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D-~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~ 79 (450)
+|+|+++++||+++|...+|+.+| .|+|+|+..++.+.++++++|.... . . ...+++.+|+.+++|.+...+..
T Consensus 28 ~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~--~--~-~~~~~~~~g~~~~~p~~~~~~~~ 102 (367)
T 1i8t_A 28 LVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVEFNR--F--T-NSPLAIYKDKLFNLPFNMNTFHQ 102 (367)
T ss_dssp EEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSCBCC--C--C-CCCEEEETTEEEESSBSHHHHHH
T ss_pred EEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhhhhh--c--c-ccceEEECCeEEEcCCCHHHHHH
Confidence 589999999999999998999995 9999998878899999999986321 1 1 22446779999999887544321
Q ss_pred c-ccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccc--hhH
Q 013082 80 S-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSF--PEL 156 (450)
Q Consensus 80 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~--~~l 156 (450)
. ....+.+..+++.+... .. ...+++|+++|+.+++|++++++++.|++.++|+.+|+++|+.++. +..
T Consensus 103 l~~~~~~~~~~~~l~~~~~--~~------~~~~~~s~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~ 174 (367)
T 1i8t_A 103 MWGVKDPQEAQNIINAQKK--KY------GDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVR 174 (367)
T ss_dssp HHCCCCHHHHHHHHHHHTT--TT------CCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBC
T ss_pred HhccCCHHHHHHHHHHHhh--cc------CCCCCccHHHHHHHHHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceee
Confidence 1 11122222233332221 11 1246789999999999999999999999999999999999987652 110
Q ss_pred HHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccce--EeccchHHHHHhccccCCccCCCeEEEecCCCccc
Q 013082 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSF--SFLGGMQVLSLSYSHDGRSALENWSLCSSNQEKQS 234 (450)
Q Consensus 157 ~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gG~~~l~~~l~~~~~~~~~~~~v~~~~g~~~~ 234 (450)
.. . + .....+.| +++||+++++++++. +..|.++..-...
T Consensus 175 ~~----~------------~---------------~~~~~~~~~~~p~gG~~~l~~~l~~-------g~~i~l~~~V~~i 216 (367)
T 1i8t_A 175 FT----F------------D---------------NNYFSDRYQGIPVGGYTKLIEKMLE-------GVDVKLGIDFLKD 216 (367)
T ss_dssp SS----S------------C---------------CCSCCCSEEECBTTCHHHHHHHHHT-------TSEEECSCCGGGS
T ss_pred ec----c------------c---------------cccccchhhcccCCCHHHHHHHHhc-------CCEEEeCCceeee
Confidence 00 0 0 00001223 889999999999874 2344443321000
Q ss_pred ---cceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceE
Q 013082 235 ---LGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTL 311 (450)
Q Consensus 235 ---~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 311 (450)
....||+||+|+|++.+.++. +.+++|.++..|++.++++.++ ....+++++.+ .+..
T Consensus 217 ~~~v~~~~D~VV~a~p~~~~~~~~------------l~~l~y~s~~~v~~~~d~~~~~---~~~~~~~~~~~----~~~~ 277 (367)
T 1i8t_A 217 KDSLASKAHRIIYTGPIDQYFDYR------------FGALEYRSLKFETERHEFPNFQ---GNAVINFTDAN----VPYT 277 (367)
T ss_dssp HHHHHTTEEEEEECSCHHHHTTTT------------TCCCCEEEEEEEEEEESSSCSS---SSSEEEECCTT----SSCS
T ss_pred chhhhccCCEEEEeccHHHHHHHh------------hCCCCCceEEEEEEEeccccCC---CCeEEEeCCCC----Ccee
Confidence 024799999999999876652 4478999999999999877543 12224455332 2445
Q ss_pred EEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHH
Q 013082 312 GTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSV 391 (450)
Q Consensus 312 ~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~ 391 (450)
.+++.++..|... ++++++....+. |. + .-.+.||.+..++...
T Consensus 278 ri~~~~~~~~~~~--~~~~v~~e~~~~----~~------------------------~------~~~p~ypv~~~~~~~~ 321 (367)
T 1i8t_A 278 RIIEHKHFDYVET--KHTVVTKEYPLE----WK------------------------V------GDEPYYPVNDNKNMEL 321 (367)
T ss_dssp EEEEGGGGSCCCC--SCEEEEEEEEEE----CC------------------------T------TSCCCEECCSHHHHHH
T ss_pred eEEeecccCCCCC--CCEEEEEEEecc----cC------------------------C------CCeeecccCChhHHHH
Confidence 5666665445422 345554332111 10 0 1112366666666666
Q ss_pred HHHHHHHHhhCCCeEEecCC--cCCCChHHHHHHHHHHHHHHHH
Q 013082 392 LEAIEKMETNLPGFFYAGNH--RGGLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 392 ~~~~~~~~~~~~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~~ 433 (450)
+..++......+||+|||.+ +.+.++|+||.||+++|+.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 322 FKKYRELASREDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp HHHHHHHHHHCTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCEEEcccceeeEecCHHHHHHHHHHHHHHHhc
Confidence 66666655667899999987 7777899999999999999863
No 21
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.93 E-value=2.3e-26 Score=244.23 Aligned_cols=232 Identities=15% Similarity=0.174 Sum_probs=164.8
Q ss_pred cceEeccchHHHHHhcccc-----C------CccCCCeEEEecCC--CccccceecCEEEEcCChhhhhhhh---hccCC
Q 013082 197 GSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCSSNQ--EKQSLGLSFDAVIMTAPLCNVKEMK---ITKGG 260 (450)
Q Consensus 197 ~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~v~~~~g--~~~~~~~~ad~VI~t~P~~~~~~ll---~~~~~ 260 (450)
..+.++|||++|+++|+.. + ...+++|.|++.+. .+...+++||+||+|+|+.++++++ .|.|.
T Consensus 563 ~~~~~~gG~~~L~~aLa~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~ 642 (852)
T 2xag_A 563 SHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP 642 (852)
T ss_dssp CCEEETTCTTHHHHHHTTTCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESC
T ss_pred ceEEecCcHHHHHHHHHhCCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCC
Confidence 4578999999999988631 1 12356788887651 0112479999999999999999842 13444
Q ss_pred CCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCC
Q 013082 261 NLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339 (450)
Q Consensus 261 ~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~ 339 (450)
.|. ..++|++++|.++.+|+|.|++++|+.+...||++.+...+ ....+++|++. +..+|++|+++..
T Consensus 643 LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~---~~~l~~~~~~~--------~~pvLl~~v~G~~ 711 (852)
T 2xag_A 643 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTAS---RGELFLFWNLY--------KAPILLALVAGEA 711 (852)
T ss_dssp CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTT---TTTTCEEEECS--------SSSEEEEEECHHH
T ss_pred CCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCC---CCceEEEecCC--------CCCEEEEEecCcC
Confidence 444 45678899999999999999999987545678877655431 22344556543 1237778887765
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHhCCC--CCCceEEeeccCC------CCCCCCCCHHHHHHHHHHHHh-----------
Q 013082 340 NKELAKASTDELKQIVTSDLRQLLGVE--GDPAFVNHFFWSK------AFPLYGRDYDSVLEAIEKMET----------- 400 (450)
Q Consensus 340 ~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~~w~~------a~p~~~~g~~~~~~~~~~~~~----------- 400 (450)
+..+..++++++++.++++|+++||.. .+|..+.+++|.. +|..+.+|..... ...+..
T Consensus 712 a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~--~~~L~~P~~~~~~~p~~ 789 (852)
T 2xag_A 712 AGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGND--YDLMAQPITPGPSIPGA 789 (852)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTH--HHHTTSCBCCCCSSTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhh--HHHHhCccccccccccc
Confidence 566778899999999999999999864 4788999999964 4555556653210 111222
Q ss_pred --hCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHHHhcccchh
Q 013082 401 --NLPGFFYAGNHRG---GLSVGKSIASGCKAAELVISYLEKSSDD 441 (450)
Q Consensus 401 --~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~~~~~~~~~ 441 (450)
+.++|||||+++. ...+|||+.||.+||++|++.+......
T Consensus 790 ~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~~~~ 835 (852)
T 2xag_A 790 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYT 835 (852)
T ss_dssp CCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred cCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 2358999999963 2358999999999999999988665443
No 22
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.91 E-value=4.5e-23 Score=201.43 Aligned_cols=327 Identities=11% Similarity=0.081 Sum_probs=217.2
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEE-ccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhh
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~-D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~ 78 (450)
+|+|+++++||+++|.. ..|+.+ |.|+|+|+..++.+.++++++|... ...+..+++.+|+++++|.++..+.
T Consensus 56 ~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~~lP~~~~~~~ 130 (397)
T 3hdq_A 56 LIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWR-----PYQHRVLASVDGQLLPIPINLDTVN 130 (397)
T ss_dssp EEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCCEE-----ECCCBEEEEETTEEEEESCCHHHHH
T ss_pred EEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhhcc-----cccccceEEECCEEEEcCCChHHHH
Confidence 58999999999999987 789875 9999999988899999999998532 1223567788999999998764432
Q ss_pred h--cccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhH
Q 013082 79 T--SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPEL 156 (450)
Q Consensus 79 ~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l 156 (450)
. ...+++.....++.. ... ...+++|+++|+.+++|++++++|+.|++.++|+.+++++|+.|+. ++
T Consensus 131 ~l~~~~~~~~~~~~~l~~----~~~------~~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~-Rv 199 (397)
T 3hdq_A 131 RLYGLNLTSFQVEEFFAS----VAE------KVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWGLDPSELDASVTA-RV 199 (397)
T ss_dssp HHHTCCCCHHHHHHHHHH----HCC------CCSSCCBHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGG-GS
T ss_pred HhhccCCCHHHHHHHHhh----ccc------CCCCCcCHHHHHHHhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHH-hc
Confidence 1 112333332222221 111 2467899999999999999999999999999999999999998652 11
Q ss_pred HHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccccCCccCCCeEEEecCCC-cccc
Q 013082 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHDGRSALENWSLCSSNQE-KQSL 235 (450)
Q Consensus 157 ~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~~~~~~v~~~~g~-~~~~ 235 (450)
- ... . .+.- .....-...++||+++|.+++... .++.|.++..- ....
T Consensus 200 p-----~~~----------~--------~d~~---yf~~~~qg~P~gGy~~l~e~l~~~-----~g~~V~l~~~v~~~~~ 248 (397)
T 3hdq_A 200 P-----TRT----------N--------RDNR---YFADTYQAMPLHGYTRMFQNMLSS-----PNIKVMLNTDYREIAD 248 (397)
T ss_dssp C-----CCS----------S--------CCCB---SCCCSEEEEETTCHHHHHHHHTCS-----TTEEEEESCCGGGTTT
T ss_pred C-----ccc----------c--------cCcc---chhhhheeccCCCHHHHHHHHHhc-----cCCEEEECCeEEeccc
Confidence 0 000 0 0000 000111136999999999998632 24455543220 0113
Q ss_pred ceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEe
Q 013082 236 GLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLF 315 (450)
Q Consensus 236 ~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 315 (450)
++.||+||+|+|++.+... .+.+++|.++.++++.++.+.+. ....+.+|+.+ +...++.
T Consensus 249 ~~~~d~vI~T~P~d~~~~~------------~~g~L~yrsl~~~~~~~~~~~~~---~~~~vn~~d~~-----p~tRi~e 308 (397)
T 3hdq_A 249 FIPFQHMIYTGPVDAFFDF------------CYGKLPYRSLEFRHETHDTEQLL---PTGTVNYPNDY-----AYTRVSE 308 (397)
T ss_dssp TSCEEEEEECSCHHHHTTT------------TTCCCCEEEEEEEEEEESSSCSC---SSSEEECSSSS-----SCSEEEE
T ss_pred cccCCEEEEcCCHHHHHHH------------hcCCCCCceEEEEEEEeccccCC---CCeEEEeCCCC-----cceEEEe
Confidence 6789999999999887543 14478999999999999876532 22235556432 4555665
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHHHHH
Q 013082 316 SSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAI 395 (450)
Q Consensus 316 ~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~ 395 (450)
.++. +.. +.++++|+...+... .+| -||............+
T Consensus 309 ~k~~-~~~-~~~~t~i~~Ey~~~~---------------------------~~p----------yYpv~~~~~~~~~~~y 349 (397)
T 3hdq_A 309 FKHI-TGQ-RHHQTSVVYEYPRAE---------------------------GDP----------YYPVPRPENAELYKKY 349 (397)
T ss_dssp HHHH-HCC-CCSSEEEEEEEEESS---------------------------SSC----------CEECCSHHHHHHHHHH
T ss_pred eccc-CCC-CCCCEEEEEEECCCC---------------------------Ccc----------ccccCchhHHHHHHHH
Confidence 5442 433 345677665432100 111 1565554444444555
Q ss_pred HHHHhhCCCeEEecCC--cCCCChHHHHHHHHHHHHHHHH
Q 013082 396 EKMETNLPGFFYAGNH--RGGLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 396 ~~~~~~~~~l~~aG~~--~~g~~~~~ai~SG~~aA~~i~~ 433 (450)
..+....+||+|+|.. +....|+.+|.+|+.+++.+++
T Consensus 350 ~~~a~~~~~v~~~GRlg~y~Y~~md~~i~~al~~~~~~~~ 389 (397)
T 3hdq_A 350 EALADAAQDVTFVGRLATYRYYNMDQVVAQALATFRRLQG 389 (397)
T ss_dssp HHHHHHCTTEEECSTTTTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEcccceEEEeccHHHHHHHHHHHHHHHhc
Confidence 5555556899999998 5667899999999999998865
No 23
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.91 E-value=1.8e-23 Score=213.05 Aligned_cols=396 Identities=13% Similarity=0.126 Sum_probs=183.7
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCc--cccc-cCCCCceEEEECCEEeecCCChhHh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIRE--KQQF-PISQYKRYVVRNGVPFLIPTNPIAL 77 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~--~~~~-~~~~~~~~~~~~G~~~~~p~~~~~~ 77 (450)
+|||+++++|||++|++.+|+.+|.|+|++... ..+.++++.+|... .+.+ +.....++.+.+|+.+.++.++..+
T Consensus 28 ~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (501)
T 4dgk_A 28 LLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDP-SAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRL 106 (501)
T ss_dssp EEECCC-------CEEEETTEEEECSCCCBSCT-HHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHH
T ss_pred EEEccCCCCCCcEEEEEeCCEEEecCceeecCc-hhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHH
Confidence 589999999999999999999999999987543 45678899988542 2222 1123345555688888777765443
Q ss_pred hhc-ccCChhHH--H----HHhcccccc-----ccCC----------cccccCCCcCCcHHHHHHHhhcHHHHHHHhhhh
Q 013082 78 LTS-NFLSAQSK--F----QIILEPFLW-----KKSD----------SAKVSAEDAKESVGGFFQRHFGREVVDFLIDPF 135 (450)
Q Consensus 78 ~~~-~~l~~~~~--~----~~~~~~~~~-----~~~~----------~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~ 135 (450)
... .-+++.+. + +.....+.. .... ...........|+.+++.+.+..+.++.++...
T Consensus 107 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 186 (501)
T 4dgk_A 107 EAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFH 186 (501)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhh
Confidence 211 00111111 0 111100000 0000 000000001235666776666655555555422
Q ss_pred hcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc-
Q 013082 136 VAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH- 214 (450)
Q Consensus 136 ~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~- 214 (450)
...++..|.+.++...+ +.. + ....+.++++||+++|+++|+.
T Consensus 187 -~~~~g~~p~~~~~~~~~--~~~-----------~----------------------~~~~G~~~p~GG~~~l~~aL~~~ 230 (501)
T 4dgk_A 187 -SLLVGGNPFATSSIYTL--IHA-----------L----------------------EREWGVWFPRGGTGALVQGMIKL 230 (501)
T ss_dssp -HHHHHSCC--CCCTHHH--HHH-----------H----------------------HSCCCEEEETTHHHHHHHHHHHH
T ss_pred -hcccCCCcchhhhhhhh--hhh-----------h----------------------hccCCeEEeCCCCcchHHHHHHH
Confidence 22345555554432211 100 0 0134567999999999988752
Q ss_pred ---------cCCc------cCCCeE-EEecCCCccccceecCEEEEcCChhhhhh-hhhccCCCCCcCCCCCCCCCC-Ce
Q 013082 215 ---------DGRS------ALENWS-LCSSNQEKQSLGLSFDAVIMTAPLCNVKE-MKITKGGNLFPLDFLPEVIYM-PL 276 (450)
Q Consensus 215 ---------~~~~------~~~~~~-v~~~~g~~~~~~~~ad~VI~t~P~~~~~~-ll~~~~~~p~~~~~l~~~~y~-~~ 276 (450)
.+.+ .++++. |++++|+ ++.||+||++++++.+.. |+...+......+.+++.++. +.
T Consensus 231 ~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~----~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~ 306 (501)
T 4dgk_A 231 FQDLGGEVVLNARVSHMETTGNKIEAVHLEDGR----RFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSL 306 (501)
T ss_dssp HHHTTCEEECSCCEEEEEEETTEEEEEEETTSC----EEECSCEEECCC---------------------------CCEE
T ss_pred HHHhCCceeeecceeEEEeeCCeEEEEEecCCc----EEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccccCCce
Confidence 1111 234444 7788885 899999999998887765 541111222334566666664 45
Q ss_pred EEEEEEecCCCCCCCCCCeeEEecCCCCC-----------CCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCC
Q 013082 277 SVIITTFKKENVRRPLEGFGVLVPSKEQQ-----------NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAK 345 (450)
Q Consensus 277 ~~v~l~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~ 345 (450)
.+++++++.+. + ....+.+++..+... ...+...+...|..-|..+|+|+..+.+++.... ..+.+
T Consensus 307 ~~~~~~l~~~~-~-~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~-~~~~~ 383 (501)
T 4dgk_A 307 FVLYFGLNHHH-D-QLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPH-LGTAN 383 (501)
T ss_dssp EEEEEEESSCC-T-TSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECC-TTTSC
T ss_pred eEEEecccCCc-c-ccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCc-ccccc
Confidence 57888988653 2 222333333222100 0011222333444446678888887766553221 11112
Q ss_pred ----CCHHHHHHHHHHHHHHHh--CCCCCCceEEee---ccCCCCCC-----CCCCHHHHH-HHHHH--HHhhCCCeEEe
Q 013082 346 ----ASTDELKQIVTSDLRQLL--GVEGDPAFVNHF---FWSKAFPL-----YGRDYDSVL-EAIEK--METNLPGFFYA 408 (450)
Q Consensus 346 ----~~~eel~~~~~~~L~~~~--~~~~~p~~~~v~---~w~~a~p~-----~~~g~~~~~-~~~~~--~~~~~~~l~~a 408 (450)
...+++.+++++.|++.+ ++...++...+. .|..-+.. |.......+ ..+|+ ..++++|||+|
T Consensus 384 ~~~~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~ 463 (501)
T 4dgk_A 384 LDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLV 463 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEE
Confidence 234677888888888765 232222222221 23221111 111111000 01222 23678999999
Q ss_pred cCCc-CCCChHHHHHHHHHHHHHHHHHhcccch
Q 013082 409 GNHR-GGLSVGKSIASGCKAAELVISYLEKSSD 440 (450)
Q Consensus 409 G~~~-~g~~~~~ai~SG~~aA~~i~~~~~~~~~ 440 (450)
|+++ +|.|+++|+.||+.||+.|+++|..-+.
T Consensus 464 G~~t~pG~Gv~ga~~SG~~aA~~il~dL~gG~~ 496 (501)
T 4dgk_A 464 GAGTHPGAGIPGVIGSAKATAGLMLEDLIGGSH 496 (501)
T ss_dssp CCH------HHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9996 6788999999999999999999865443
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.91 E-value=3.7e-24 Score=213.44 Aligned_cols=368 Identities=15% Similarity=0.207 Sum_probs=216.9
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCC-ChhHhhh
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT-NPIALLT 79 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~-~~~~~~~ 79 (450)
+|||+++++|||++|.+.+|+.+|.|++++...++.+.++++++|+... . .....++++.+|+.+ .|. ++....
T Consensus 34 ~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~--~-~~~~~~~~~~~g~~~-~~~~~~~~~~- 108 (424)
T 2b9w_A 34 TILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVD--G-PKLRREFLHEDGEIY-VPEKDPVRGP- 108 (424)
T ss_dssp EEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCC--S-CCCCEEEECTTSCEE-CGGGCTTHHH-
T ss_pred EEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCccc--c-ccccceeEcCCCCEe-ccccCcccch-
Confidence 5899999999999999999999999999988778899999999998642 2 122345555577654 221 111100
Q ss_pred cccCChhHHHH-Hhccccc-cccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHH
Q 013082 80 SNFLSAQSKFQ-IILEPFL-WKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELW 157 (450)
Q Consensus 80 ~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~ 157 (450)
.......++. .+...+. ..............++|+.+|++++..+...+.+..|++.+.|+ ++.++|+.+++..
T Consensus 109 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~-- 184 (424)
T 2b9w_A 109 -QVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYG-HFDNVPAAYVLKY-- 184 (424)
T ss_dssp -HHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCCCC-CTTTSBHHHHHHH--
T ss_pred -hHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhccC-ChHhcCHHHHHHh--
Confidence 0000001111 1111110 00000000001234689999999877667788888999888886 5677777654211
Q ss_pred HHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-------CC------ccCCCeE
Q 013082 158 NLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------GR------SALENWS 224 (450)
Q Consensus 158 ~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~~------~~~~~~~ 224 (450)
.+. .++... .....+++.+|++++++++... +. ..+++|.
T Consensus 185 ------~~~-~~~~~~--------------------~~~~~~~~~~g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~ 237 (424)
T 2b9w_A 185 ------LDF-VTMMSF--------------------AKGDLWTWADGTQAMFEHLNATLEHPAERNVDITRITREDGKVH 237 (424)
T ss_dssp ------SCH-HHHHHH--------------------HHTCCBCCTTCHHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEE
T ss_pred ------hhH-hhhhcc--------------------cCCceEEeCChHHHHHHHHHHhhcceEEcCCEEEEEEEECCEEE
Confidence 111 111110 0123467899999999887521 11 2345688
Q ss_pred EEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCC
Q 013082 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQ 304 (450)
Q Consensus 225 v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~ 304 (450)
|++++| ++.||+||+|+|+..+.+++ ++ .|+.++.+.+++|.+.. +.+.+.+.. + .+..++|+...
T Consensus 238 v~~~~g-----~~~ad~Vv~a~~~~~~~~~l--~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~----~~~~~~~~~~~ 303 (424)
T 2b9w_A 238 IHTTDW-----DRESDVLVLTVPLEKFLDYS--DA-DDDEREYFSKIIHQQYM-VDACLVKEY-P----TISGYVPDNMR 303 (424)
T ss_dssp EEESSC-----EEEESEEEECSCHHHHTTSB--CC-CHHHHHHHTTCEEEEEE-EEEEEESSC-C----SSEEECGGGGS
T ss_pred EEECCC-----eEEcCEEEECCCHHHHhhcc--CC-CHHHHHHHhcCCcceeE-EEEEEeccC-C----cccccccCCCC
Confidence 888776 58999999999999988875 43 33333445677776643 333333332 2 13345554321
Q ss_pred CCCCceEE-EEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCC
Q 013082 305 QNGLKTLG-TLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPL 383 (450)
Q Consensus 305 ~~~~~~~~-~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~ 383 (450)
....+ .++.+..++. +...++++|+.+. ...+.+.+++++.+.++++|.+ ++++. +.......|.. +|.
T Consensus 304 ---~~~~g~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~-l~~~~-~~~~~~~~w~~-~p~ 373 (424)
T 2b9w_A 304 ---PERLGHVMVYYHRWAD---DPHQIITTYLLRN-HPDYADKTQEECRQMVLDDMET-FGHPV-EKIIEEQTWYY-FPH 373 (424)
T ss_dssp ---GGGTTSCCEEEECCTT---CTTSCEEEEEECC-BTTBCCCCHHHHHHHHHHHHHH-TTCCE-EEEEEEEEEEE-EEE
T ss_pred ---CcCCCcceEEeeecCC---CCceEEEEEeccC-CCcccccChHHHHHHHHHHHHH-cCCcc-cccccccceee-eec
Confidence 01111 2333333331 1234666676543 3456677899999999999998 66531 11122335643 443
Q ss_pred -----CCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHH
Q 013082 384 -----YGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 384 -----~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~ 432 (450)
+..|+...+. ..++.+||||||+|+.....|+|+.||.+||+.|+
T Consensus 374 ~~~~~~~~G~~~~~~----~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 374 VSSEDYKAGWYEKVE----GMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp CCHHHHHTTHHHHHH----HTTTGGGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred cCHHHHhccHHHHHH----HHhCCCCceEeccccccccHHHHHHHHHHHHHHhc
Confidence 3344433222 12345689999999854447999999999999874
No 25
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.90 E-value=7.1e-24 Score=223.91 Aligned_cols=383 Identities=17% Similarity=0.163 Sum_probs=221.2
Q ss_pred CeeccCCCCCeeEEEEe-cCcEEEccCCCccccC-hHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhh
Q 013082 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-~~g~~~D~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~ 78 (450)
+|||+++++|||++|.+ .+|+.+|+|++++++. .+.+..+++++|+...... . ...++..+|+... .......
T Consensus 363 ~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~--~-~~~l~~~~g~~~~--~~~~~~~ 437 (776)
T 4gut_A 363 TVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFG--E-RCDLIQEGGRITD--PTIDKRM 437 (776)
T ss_dssp EEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCEECC--S-CCCEECTTSCBCC--HHHHHHH
T ss_pred EEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcccccc--c-ccceEccCCcccc--hhHHHHH
Confidence 58999999999999987 4699999999998753 4578889999999753221 1 2233333554311 0011110
Q ss_pred hcccCChhHHHHHhccccccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchhhccchhHHH
Q 013082 79 TSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWN 158 (450)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~ 158 (450)
.. . ....+..... +.... ....+.++.+++.+.+.. ++.. .+.+...+....+...+..
T Consensus 438 ~~-~--~~~ll~~~~~-~~~~~-------~~~~d~sl~~~~~~~~~~-----~l~~-----~gv~~~~l~~~~l~~~~~~ 496 (776)
T 4gut_A 438 DF-H--FNALLDVVSE-WRKDK-------TQLQDVPLGEKIEEIYKA-----FIKE-----SGIQFSELEGQVLQFHLSN 496 (776)
T ss_dssp HH-H--HHHHHHHHHH-HGGGC-------CGGGCCBHHHHHHHHHHH-----HHHH-----SCCCCCHHHHHHHHHHHHH
T ss_pred HH-H--HHHHHHHHHH-Hhhcc-------cccccccHHHHHHHHHHH-----HHHh-----cCCCccchhHHHHHHHHHH
Confidence 00 0 0001111111 11111 123567777777653321 2221 1111111111110000001
Q ss_pred HHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc-----C------CccCCCeEEEe
Q 013082 159 LEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCS 227 (450)
Q Consensus 159 ~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~v~~ 227 (450)
++...|+.+.. .+... +. ..... .........+.+|++.++++++.. + ...+++|.|++
T Consensus 497 l~~~~G~~l~~-----ls~~~-~~-~~~~~---~~~~G~~~~~~~G~~~l~~aLa~gl~I~l~t~V~~I~~~~~~v~V~~ 566 (776)
T 4gut_A 497 LEYACGSNLHQ-----VSARS-WD-HNEFF---AQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTT 566 (776)
T ss_dssp HHHHHTSCTTS-----BBTTT-TT-GGGGS---CCCCSCEEECTTCTHHHHHHHHTTSCEESSCCEEEEECSSSSEEEEE
T ss_pred HHHhcCCChHH-----cChhh-hh-hhhhH---HhcCCCeEEECChHHHHHHHHHhCCcEEcCCeeEEEEEcCCEEEEEE
Confidence 11111110000 00000 00 00000 001223457899999999887521 1 22456799998
Q ss_pred cCCCccccceecCEEEEcCChhhhhhhh-hccCCCC-CcCCCCCCCCCCCeEEEEEEecCCCCCCC---CCCeeEEecCC
Q 013082 228 SNQEKQSLGLSFDAVIMTAPLCNVKEMK-ITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRP---LEGFGVLVPSK 302 (450)
Q Consensus 228 ~~g~~~~~~~~ad~VI~t~P~~~~~~ll-~~~~~~p-~~~~~l~~~~y~~~~~v~l~~~~~~~~~~---~~~~g~~~~~~ 302 (450)
.+|. ++.||+||+|+|++++++.. .+.|..| ...+.+.+++|.++.+|++.|++++|+.. ...+|.+.+..
T Consensus 567 ~~G~----~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~ 642 (776)
T 4gut_A 567 TDGT----GYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 642 (776)
T ss_dssp TTCC----EEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSG
T ss_pred CCCc----EEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCc
Confidence 8874 79999999999999998621 1344344 34567888999999999999999998532 23455554433
Q ss_pred CCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCC--CCCceEEeeccCC-
Q 013082 303 EQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVE--GDPAFVNHFFWSK- 379 (450)
Q Consensus 303 ~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~--~~p~~~~v~~w~~- 379 (450)
+ ...+.++++++. | +++..+|.++++|..+..+..++++|+++.++++|++++|.. +.|..+.+++|..
T Consensus 643 ~---~~~~~~~~~d~~--p---~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~d 714 (776)
T 4gut_A 643 S---KRGLFAVFYDMD--P---QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTD 714 (776)
T ss_dssp G---GTTEEEEEEESC--T---TSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGC
T ss_pred C---CCceEEEEecCC--C---CCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCC
Confidence 3 234666666653 2 122457778887755556778999999999999999999864 4788999999953
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHhhC-CCeEEecCCcC---CCChHHHHHHHHHHHHHHHH
Q 013082 380 -----AFPLYGRDYDSVLEAIEKMETNL-PGFFYAGNHRG---GLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 380 -----a~p~~~~g~~~~~~~~~~~~~~~-~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~ 433 (450)
++..+.+|... ..+..+..+. ++|+|||+++. ...+|||+.||.+||++|++
T Consensus 715 p~s~Gsys~~~~g~~~--~~~~~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 715 PWIQMAYSFVKTGGSG--EAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp TTTCCSEEEEBTTCCT--HHHHHHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCccCCCCch--hHHHHHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 22222333221 1122344453 68999999973 23499999999999999975
No 26
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=208.22 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=162.9
Q ss_pred ceEeccchHHHHHhccc-------cC------CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCC----
Q 013082 198 SFSFLGGMQVLSLSYSH-------DG------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG---- 260 (450)
Q Consensus 198 ~~~~~gG~~~l~~~l~~-------~~------~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~---- 260 (450)
.|...+|++++++++.. .+ .+.+++|+|++++|+ .+.||+||+|+|++++.+|+ .+.
T Consensus 104 ~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~----~~~ad~vV~A~p~~~~~~ll--~~~~~~l 177 (342)
T 3qj4_A 104 NFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGS----PEQFDLIVLTMPVPEILQLQ--GDITTLI 177 (342)
T ss_dssp EEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSC----CEEESEEEECSCHHHHTTCB--STHHHHS
T ss_pred ceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCC----EEEcCEEEECCCHHHHHHHh--ccccccc
Confidence 36788999999887742 11 224567999988874 68999999999999999997 322
Q ss_pred CCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCC-CCCcEEEEEEeCCCC
Q 013082 261 NLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRV-PKDLYLYTTFVGGSR 339 (450)
Q Consensus 261 ~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~-p~g~~~l~~~~~~~~ 339 (450)
+++..+.+.+++|.++.+|++.|++++|. +....|+++++.. .+..+.+++.+ +++. +++..++++++++.+
T Consensus 178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~g~~~~~~~-----~~~~~~~~~~k-~~r~~~~~~~~~v~~~~~~~ 250 (342)
T 3qj4_A 178 SECQRQQLEAVSYSSRYALGLFYEAGTKI-DVPWAGQYITSNP-----CIRFVSIDNKK-RNIESSEIGPSLVIHTTVPF 250 (342)
T ss_dssp CHHHHHHHHTCCBCCEEEEEEECSSCC---CCSCSEEECSSCS-----SEEEEEEHHHH-TTCCCC-CCCEEEEEECHHH
T ss_pred CHHHHHHHhcCCccccEEEEEEECCCCcc-CCceeeEEccCCc-----ceEEEEccccC-CCCCCCCCCceEEEECCHHH
Confidence 22346778899999999999999987543 2345677776432 23333455554 5543 333346667777666
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHH-hhCCCeEEecCCcCCCChH
Q 013082 340 NKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKME-TNLPGFFYAGNHRGGLSVG 418 (450)
Q Consensus 340 ~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~-~~~~~l~~aG~~~~g~~~~ 418 (450)
+.++.+++++++++.++++|++++|...+|+++.++||.+++|+|.+.. . ...+. ...|+|++||||+.|.++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~--~---~~~~~~~~~~~l~laGd~~~g~~v~ 325 (342)
T 3qj4_A 251 GVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAAN--C---PGQMTLHHKPFLACGGDGFTQSNFD 325 (342)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSS--S---CSCEEEETTTEEEECSGGGSCSSHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCC--C---cceeEecCCccEEEEccccCCCCcc
Confidence 6667789999999999999999999777899999999999999986621 0 00111 3558999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013082 419 KSIASGCKAAELVISY 434 (450)
Q Consensus 419 ~ai~SG~~aA~~i~~~ 434 (450)
+|+.||.+||++|++.
T Consensus 326 ~ai~sg~~aa~~i~~~ 341 (342)
T 3qj4_A 326 GCITSALCVLEALKNY 341 (342)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999764
No 27
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.89 E-value=8.9e-23 Score=203.86 Aligned_cols=364 Identities=11% Similarity=0.069 Sum_probs=222.8
Q ss_pred CeeccCCCCCeeEEEEecC---cEEEccCCCccccC-hHHHHHHHHHcCCCccccccCCCCceEE-EECCEEeec---CC
Q 013082 1 MVFEADERAGGKLRSISKD---GLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYV-VRNGVPFLI---PT 72 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~---g~~~D~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~~-~~~G~~~~~---p~ 72 (450)
+|||+++++||++.|.+.+ |..+|.|++++... ++.+.++++++|+...... .....++ ..+|+.... +.
T Consensus 28 ~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
T 3k7m_X 28 LLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAAAS--EFTSFRHRLGPTAVDQAFPIPG 105 (431)
T ss_dssp EEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEECC--CCCEECCBSCTTCCSSSSCCCG
T ss_pred EEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeeecC--CCCcEEEEecCCeecCCCCCCH
Confidence 5899999999999999887 99999999999877 7899999999999753222 1111111 224432211 11
Q ss_pred ChhHhhhcccCChhHHHHHhc--cccccccC-CcccccCCCcCCcHHHHHHHhhcHHHHHHHhhhhhcccccCCcccchh
Q 013082 73 NPIALLTSNFLSAQSKFQIIL--EPFLWKKS-DSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVM 149 (450)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p~~~~~~~~~~~~~Sa 149 (450)
.....+.. ...++.. ..+..... .... ....+ .|+.+|+.+...++....++.++....++.++.++|+
T Consensus 106 ~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~-~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 177 (431)
T 3k7m_X 106 SEAVAVEA------ATYTLLRDAHRIDLEKGLENQD-LEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASA 177 (431)
T ss_dssp GGHHHHHH------HHHHHHHHHTTCCTTTCTTSSS-CGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBH
T ss_pred HHHHHHHH------HHHHHHHHHHhcCCCCCccCcc-hhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhH
Confidence 11111110 0011111 00100000 0000 01234 8999999887766677778888888899999999998
Q ss_pred hccchhHHHHHHhcCChHHH-HHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhcccc------C------
Q 013082 150 RHSFPELWNLEKRYGSVIAG-AIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD------G------ 216 (450)
Q Consensus 150 ~~~~~~l~~~~~~~gsl~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------~------ 216 (450)
..++..+. ..+..+.. +. ... ..+.+|++.+++++... +
T Consensus 178 ~~~~~~~~----~~~~~~~~~~~-----------------------~~~-~~~~~g~~~l~~~~~~~~g~i~~~~~V~~i 229 (431)
T 3k7m_X 178 LWMLQLVA----AHHYSILGVVL-----------------------SLD-EVFSNGSADLVDAMSQEIPEIRLQTVVTGI 229 (431)
T ss_dssp HHHHHHHH----HTTSCHHHHHH-----------------------TCC-EEETTCTHHHHHHHHTTCSCEESSCCEEEE
T ss_pred HHHHHHHH----hcCCccceeec-----------------------chh-hhcCCcHHHHHHHHHhhCCceEeCCEEEEE
Confidence 76543322 12211111 11 011 17899999998776521 1
Q ss_pred CccCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCe
Q 013082 217 RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGF 295 (450)
Q Consensus 217 ~~~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~ 295 (450)
...++++.|++.+|. +++||+||+|+|+++++.+. +.|..|. ..+.+..+.|...++|.+.|+.++ + ++
T Consensus 230 ~~~~~~v~v~~~~g~----~~~ad~vi~a~~~~~l~~i~-~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~-~----~i 299 (431)
T 3k7m_X 230 DQSGDVVNVTVKDGH----AFQAHSVIVATPMNTWRRIV-FTPALPERRRSVIEEGHGGQGLKILIHVRGAE-A----GI 299 (431)
T ss_dssp ECSSSSEEEEETTSC----CEEEEEEEECSCGGGGGGSE-EESCCCHHHHHHHHHCCCCCEEEEEEEEESCC-T----TE
T ss_pred EEcCCeEEEEECCCC----EEEeCEEEEecCcchHhhee-eCCCCCHHHHHHHHhCCCcceEEEEEEECCCC-c----Cc
Confidence 123567888888874 79999999999999999886 4554444 345667778999999999999764 1 22
Q ss_pred eEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCceEEee
Q 013082 296 GVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPAFVNHF 375 (450)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~~~~v~ 375 (450)
+...+ ......+++.. ...+..+|.+++.+.. +...+.+ .+.+.|+++++. ..|..+..+
T Consensus 300 --~~~~d------~~~~~~~~~~~----~~~~~~~l~~~~~g~~---~~~~~~~----~~~~~l~~~~~~-~~~~~~~~~ 359 (431)
T 3k7m_X 300 --ECVGD------GIFPTLYDYCE----VSESERLLVAFTDSGS---FDPTDIG----AVKDAVLYYLPE-VEVLGIDYH 359 (431)
T ss_dssp --EEEBS------SSSSEEEEEEE----CSSSEEEEEEEEETTT---CCTTCHH----HHHHHHHHHCTT-CEEEEEECC
T ss_pred --eEcCC------CCEEEEEeCcC----CCCCCeEEEEEecccc---CCCCCHH----HHHHHHHHhcCC-CCccEeEec
Confidence 21111 11223344321 1134567777776543 2222332 355667776642 237778888
Q ss_pred ccC------CCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcC---CCChHHHHHHHHHHHHHHHHH
Q 013082 376 FWS------KAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRG---GLSVGKSIASGCKAAELVISY 434 (450)
Q Consensus 376 ~w~------~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g~~~~~ai~SG~~aA~~i~~~ 434 (450)
+|. ++|..+.+|.... ....+.++.++|||||+++. ...+|||+.||.+||++|+..
T Consensus 360 ~W~~d~~~~G~~~~~~~g~~~~--~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 360 DWIADPLFEGPWVAPRVGQFSR--VHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp CTTTCTTTSSSSCCCCTTTTTT--SSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCCCCcCCCCCcc--cHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence 993 4555666665321 01123456679999998752 234999999999999999863
No 28
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.78 E-value=3e-19 Score=184.91 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=136.7
Q ss_pred cceEeccchHHHHHhcccc---------C---C--c---cCCC-------eEEEec-CCCccccceecCEEEEcCChhhh
Q 013082 197 GSFSFLGGMQVLSLSYSHD---------G---R--S---ALEN-------WSLCSS-NQEKQSLGLSFDAVIMTAPLCNV 251 (450)
Q Consensus 197 ~~~~~~gG~~~l~~~l~~~---------~---~--~---~~~~-------~~v~~~-~g~~~~~~~~ad~VI~t~P~~~~ 251 (450)
..+++.||+++|+++|+.. + + + .+++ ++|++. +| ...+++||+||+|+|++.+
T Consensus 338 ~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G--~~~~~~aD~VIvTvP~~~L 415 (721)
T 3ayj_A 338 EYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHN--AVHSEAYDFVILAVPHDQL 415 (721)
T ss_dssp EECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTC--CEEEEEESEEEECSCHHHH
T ss_pred ceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCC--ceEEEEcCEEEECCCHHHH
Confidence 3568999999998776421 0 1 1 1123 777443 34 2236899999999999999
Q ss_pred hh------hh-------h--------------ccCCC-C--------CcCCCCCCCCCCCeEEEEEEe-----cCCCCCC
Q 013082 252 KE------MK-------I--------------TKGGN-L--------FPLDFLPEVIYMPLSVIITTF-----KKENVRR 290 (450)
Q Consensus 252 ~~------ll-------~--------------~~~~~-p--------~~~~~l~~~~y~~~~~v~l~~-----~~~~~~~ 290 (450)
.. +- . ++|.. | ...+++++++|.+..||.+.| ++++|..
T Consensus 416 ~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~ 495 (721)
T 3ayj_A 416 TPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQ 495 (721)
T ss_dssp HHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCE
T ss_pred hhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccc
Confidence 64 20 0 13322 3 345778999999999999999 8898864
Q ss_pred CCCC--eeEEecCCCCCCCCceEEEEe-ccCCCCCCCCCCc-EEEEEEeCCCCCCcC------CCCCHHH-------HHH
Q 013082 291 PLEG--FGVLVPSKEQQNGLKTLGTLF-SSMMFPDRVPKDL-YLYTTFVGGSRNKEL------AKASTDE-------LKQ 353 (450)
Q Consensus 291 ~~~~--~g~~~~~~~~~~~~~~~~~~~-~s~~~~~~~p~g~-~~l~~~~~~~~~~~~------~~~~~ee-------l~~ 353 (450)
. .+ .+..+.+ .++..+++ .+....+..+++. .+|..|.-+..+..+ ..+++++ +++
T Consensus 496 ~-~g~~i~~s~TD------~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~ 568 (721)
T 3ayj_A 496 W-RGEPIKAVVSD------SGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYR 568 (721)
T ss_dssp E-TTEECCEEEET------TTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHH
T ss_pred c-CCCCceeeecC------CCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHH
Confidence 3 12 1222211 23333332 2110001123333 356666644322233 2334444 499
Q ss_pred HHHHHHH--HHhCCCC--------------CCceEEeeccC-----CCCCCCCCCHHHH---HHHHH--H-HHhhCCCeE
Q 013082 354 IVTSDLR--QLLGVEG--------------DPAFVNHFFWS-----KAFPLYGRDYDSV---LEAIE--K-METNLPGFF 406 (450)
Q Consensus 354 ~~~~~L~--~~~~~~~--------------~p~~~~v~~w~-----~a~p~~~~g~~~~---~~~~~--~-~~~~~~~l~ 406 (450)
.++++|+ ++++... .+.+...+.|. +++..+.+|.... ...+. . +..+..+||
T Consensus 569 ~~l~~la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dps~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~ 648 (721)
T 3ayj_A 569 TMVNRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFF 648 (721)
T ss_dssp HHHHHTCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGSTTSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEE
T ss_pred HHHHHHhhhccCccccccccchhhhhhhhcccCceEEEeCCCCCCCCccccCCCccchhhhhhhhhhhhccccCCCCCEE
Confidence 9999999 6664211 13456778894 3333455665211 11111 0 112335799
Q ss_pred EecCCcC--CCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 407 YAGNHRG--GLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 407 ~aG~~~~--g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
||||++. +..++|||.||.+||..|+..+....
T Consensus 649 fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~~~~ 683 (721)
T 3ayj_A 649 IASDSYSHLGGWLEGAFMSALNAVAGLIVRANRGD 683 (721)
T ss_dssp ECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EeehhhccCCceehHHHHHHHHHHHHHHHHhcCCC
Confidence 9999963 34599999999999999999886644
No 29
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.69 E-value=1e-16 Score=154.27 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=158.6
Q ss_pred eEeccchHHHHHhccc-----cC------CccCCCeEEEecCCCccccce-ecCEEEEcCChhhhhhhhhccCCCCCcCC
Q 013082 199 FSFLGGMQVLSLSYSH-----DG------RSALENWSLCSSNQEKQSLGL-SFDAVIMTAPLCNVKEMKITKGGNLFPLD 266 (450)
Q Consensus 199 ~~~~gG~~~l~~~l~~-----~~------~~~~~~~~v~~~~g~~~~~~~-~ad~VI~t~P~~~~~~ll~~~~~~p~~~~ 266 (450)
+....|++.+.+++.. .+ .+.+++|.|++++|. .. .||.||+|+|+..+.+++ . ..|.+..
T Consensus 103 ~~~~~~~~~l~~~l~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~----~~~~a~~vV~a~g~~~~~~~~--~-~~~~l~~ 175 (336)
T 1yvv_A 103 WVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQ----NHGPFSHVIIATPAPQASTLL--A-AAPKLAS 175 (336)
T ss_dssp EEESSCTHHHHHHHHTTCCEECSCCEEEEEECSSCEEEEETTSC----EEEEESEEEECSCHHHHGGGG--T-TCHHHHH
T ss_pred EEcCccHHHHHHHHHccCcEEecCEEEEEEEeCCEEEEEeCCCc----CccccCEEEEcCCHHHHHHhh--c-cCHHHHH
Confidence 4556788888877642 11 224567999988874 44 599999999999999986 3 2444556
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCC
Q 013082 267 FLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKA 346 (450)
Q Consensus 267 ~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~ 346 (450)
.+..++|.++.++++.|+++.+. + ..+++++. ...+.++++..+|.+.+.+ ..++++..+.++..+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~-------~~~~~l~~~~~~p~~~~~~-~~~v~~~~~~~~~~~~~~ 244 (336)
T 1yvv_A 176 VVAGVKMDPTWAVALAFETPLQT-P--MQGCFVQD-------SPLDWLARNRSKPERDDTL-DTWILHATSQWSRQNLDA 244 (336)
T ss_dssp HHTTCCEEEEEEEEEEESSCCSC-C--CCEEEECS-------SSEEEEEEGGGSTTCCCSS-EEEEEEECHHHHHHTTTS
T ss_pred HHhhcCccceeEEEEEecCCCCC-C--CCeEEeCC-------CceeEEEecCcCCCCCCCC-cEEEEEeCHHHHHHHHhC
Confidence 67789999999999999987542 2 23444442 1356777776667654432 345555544444556678
Q ss_pred CHHHHHHHHHHHHHHHhCCC-CCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHH
Q 013082 347 STDELKQIVTSDLRQLLGVE-GDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGC 425 (450)
Q Consensus 347 ~~eel~~~~~~~L~~~~~~~-~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~ 425 (450)
+++++.+.++++|.+++|.. ..|....+++|.+++|++..++... ....++|++||||+.+.++++|+.||.
T Consensus 245 ~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~a~~~~~~~~~~~-------~~~~~rl~laGDa~~g~gv~~a~~sg~ 317 (336)
T 1yvv_A 245 SREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWGAL-------SDADLGIYVCGDWCLSGRVEGAWLSGQ 317 (336)
T ss_dssp CHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCSCE-------EETTTTEEECCGGGTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCccCCCCCCCCCee-------ecCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999865 3678889999999999988776421 123479999999998889999999999
Q ss_pred HHHHHHHHHhccc
Q 013082 426 KAAELVISYLEKS 438 (450)
Q Consensus 426 ~aA~~i~~~~~~~ 438 (450)
++|+.|.+.+...
T Consensus 318 ~lA~~l~~~~~~~ 330 (336)
T 1yvv_A 318 EAARRLLEHLQLE 330 (336)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhhh
Confidence 9999999988764
No 30
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.53 E-value=6e-13 Score=132.47 Aligned_cols=350 Identities=10% Similarity=0.062 Sum_probs=187.7
Q ss_pred CeeccCCCCCeeEEEEe-----c----------------CcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCce
Q 013082 1 MVFEADERAGGKLRSIS-----K----------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKR 59 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~-----~----------------~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~ 59 (450)
+|+|+++++||+++|++ . .++.+|+|++++... ..+.++++++|+.+.+.+... ...
T Consensus 33 ~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~-~~l~~ll~~lgl~~~l~~~~~-~~~ 110 (433)
T 1d5t_A 33 LHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMAN-GQLVKMLLYTEVTRYLDFKVV-EGS 110 (433)
T ss_dssp EEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETT-SHHHHHHHHHTGGGGCCEEEC-CEE
T ss_pred EEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeecc-chHHHHHHHcCCccceEEEEe-Cce
Confidence 58999999999999998 1 468899999988755 468999999999876544322 246
Q ss_pred EEEECCEEeecCCChhHhhhcccCChhHHHHH---hccccccccCCc--ccccCCCcCCcHHHHHHHhhcHHHHHHHhhh
Q 013082 60 YVVRNGVPFLIPTNPIALLTSNFLSAQSKFQI---ILEPFLWKKSDS--AKVSAEDAKESVGGFFQRHFGREVVDFLIDP 134 (450)
Q Consensus 60 ~~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~l~~p 134 (450)
|++.+|+.+.+|.+..+.+...+++..++.++ +.........+. .+ ....+++|+.+|+++.+-.+..+.++..
T Consensus 111 ~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~ 189 (433)
T 1d5t_A 111 FVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFE-GVDPQNTSMRDVYRKFDLGQDVIDFTGH 189 (433)
T ss_dssp EEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGT-TCCTTTSBHHHHHHHTTCCHHHHHHHHH
T ss_pred EEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhcc-ccccccCCHHHHHHHcCCCHHHHHHHHH
Confidence 77789999999988655544455554443322 111110000000 00 0124678999999876544444445443
Q ss_pred hhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc
Q 013082 135 FVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH 214 (450)
Q Consensus 135 ~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 214 (450)
.+....+.++.+.++...+..+..+....+. ..+...++++||+++|++++..
T Consensus 190 ~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~---------------------------~g~~~~~~p~gG~~~l~~~l~~ 242 (433)
T 1d5t_A 190 ALALYRTDDYLDQPCLETINRIKLYSESLAR---------------------------YGKSPYLYPLYGLGELPQGFAR 242 (433)
T ss_dssp HTSCCSSSGGGGSBSHHHHHHHHHHHHSCCS---------------------------SSCCSEEEETTCTTHHHHHHHH
T ss_pred HHHhccCCCccCCCHHHHHHHHHHHHHHHHh---------------------------cCCCcEEEeCcCHHHHHHHHHH
Confidence 3222233455555544332222111100000 0112356999999999988752
Q ss_pred ----------cCCc------cCCCeEEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEE
Q 013082 215 ----------DGRS------ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSV 278 (450)
Q Consensus 215 ----------~~~~------~~~~~~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~ 278 (450)
.+.+ .++++.+...+|+ ++.||+||+|+|+... .+ .. +. + ....
T Consensus 243 ~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~----~~~ad~VV~a~~~~~~--~~--~~--------~~--~--~~~~ 302 (433)
T 1d5t_A 243 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGE----VARCKQLICDPSYVPD--RV--RK--------AG--Q--VIRI 302 (433)
T ss_dssp HHHHHTCCCBCSCCCCEEEEETTEEEEEEETTE----EEECSEEEECGGGCGG--GE--EE--------EE--E--EEEE
T ss_pred HHHHcCCEEECCCEEEEEEEeCCEEEEEEECCe----EEECCEEEECCCCCcc--cc--cc--------cC--c--ceeE
Confidence 1111 1234442234553 7899999999988642 22 21 11 1 1122
Q ss_pred EEEEecCCCCCC--CCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCCHHHHHHHHH
Q 013082 279 IITTFKKENVRR--PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTDELKQIVT 356 (450)
Q Consensus 279 v~l~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~eel~~~~~ 356 (450)
+.+ ++++. +. ....+.++++...- +..+..-+...| .-|..+|+|++++.+++.... .+.++-++.++
T Consensus 303 ~~i-l~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~~p~------~~~~~~l~~~~ 372 (433)
T 1d5t_A 303 ICI-LSHPI-KNTNDANSCQIIIPQNQV-NRKSDIYVCMIS-YAHNVAAQGKYIAIASTTVET------TDPEKEVEPAL 372 (433)
T ss_dssp EEE-ESSCC-TTSTTCSSEEEEECGGGT-TCSSCEEEEEEE-GGGTSSCTTCEEEEEEEECCS------SCHHHHTHHHH
T ss_pred EEE-EcCcc-cccCCCceEEEEeCcccc-CCCCCEEEEEEC-CCCcccCCCCEEEEEEEecCC------CCHHHHHHHHH
Confidence 233 55542 21 11344555554210 011223232333 335678999888776653221 12222222322
Q ss_pred HHHHHHhC-CCCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHHHHHHH
Q 013082 357 SDLRQLLG-VEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKAAELVI 432 (450)
Q Consensus 357 ~~L~~~~~-~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~ 432 (450)
+. ++ ...+ .+.++.+. .|. + . ...+|||+++++.....+|+++.+++..-++|.
T Consensus 373 ~~----l~~~~~~--~~~~~~~~--~~~---~---------~--~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~ 427 (433)
T 1d5t_A 373 GL----LEPIDQK--FVAISDLY--EPI---D---------D--GSESQVFCSCSYDATTHFETTCNDIKDIYKRMA 427 (433)
T ss_dssp TT----TCSCSEE--EEEEEEEE--EES---C---------C--STTTCEEECCCCCSCSBSHHHHHHHHHHHHHHH
T ss_pred HH----hhhHHhh--eeccceee--eec---C---------C--CCCCCEEECCCCCccccHHHHHHHHHHHHHHHh
Confidence 22 22 1111 11222210 111 0 0 112589999999777778999999999988875
No 31
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.49 E-value=1e-12 Score=131.60 Aligned_cols=348 Identities=11% Similarity=0.077 Sum_probs=177.1
Q ss_pred CeeccCCCCCeeEEEEecCc-EE---------------Ec--------cCCCccccChHHHHHHHHHcCCCccccccCCC
Q 013082 1 MVFEADERAGGKLRSISKDG-LI---------------WD--------EGANTMTESEMEVKGLLDDLGIREKQQFPISQ 56 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g-~~---------------~D--------~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~ 56 (450)
+|||+++++|||++|++.+| +. ++ +|++++. ....+.++++++|+.+.+.+....
T Consensus 38 ~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l~-~~~~l~~ll~~lg~~~~l~~~~~~ 116 (453)
T 2bcg_G 38 LHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLM-ANGELTNILIHTDVTRYVDFKQVS 116 (453)
T ss_dssp EEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEE-TTSHHHHHHHHHTGGGTCCEEECC
T ss_pred EEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccccceee-cCcHHHHHHHhcCCccceEEEEcc
Confidence 58999999999999987655 22 33 3444333 335789999999997665543222
Q ss_pred CceEEEECCEEeecCCChhHhhhcccCChhHHHHHhc---cc--cccccCCcccccCCCcCCcHHHHHHHhhcHHHHHHH
Q 013082 57 YKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIIL---EP--FLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFL 131 (450)
Q Consensus 57 ~~~~~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~l 131 (450)
..|++.+|+.+.+|.+..+.+...+++..+|.++.. .. +....+..++ ....+..|+.+|+++.+-.+....+
T Consensus 117 -~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~s~~~~l~~~~~~~~l~~~ 194 (453)
T 2bcg_G 117 -GSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQ-GLDLDKNTMDEVYYKFGLGNSTKEF 194 (453)
T ss_dssp -CEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGGST-TCCTTTSBHHHHHHHTTCCHHHHHH
T ss_pred -ceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchhhh-ccccccCCHHHHHHHhCCCHHHHHH
Confidence 477788999999998855545545555544433211 11 1100000000 0124678999999875443334444
Q ss_pred hhhhhcccccCCc-ccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccce-EeccchHHHH
Q 013082 132 IDPFVAGTSAGDP-ESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSF-SFLGGMQVLS 209 (450)
Q Consensus 132 ~~p~~~~~~~~~~-~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~ 209 (450)
+.-... +.+.+. ...++...+..+..+. ..+.. ...+.| +++||+++|+
T Consensus 195 l~~~~~-l~~~~~~~~~p~~~~~~~~~~~~-------~s~~~---------------------~~~~~~~~p~gG~~~l~ 245 (453)
T 2bcg_G 195 IGHAMA-LWTNDDYLQQPARPSFERILLYC-------QSVAR---------------------YGKSPYLYPMYGLGELP 245 (453)
T ss_dssp HHHHTS-CCSSSGGGGSBHHHHHHHHHHHH-------HHHHH---------------------HSSCSEEEETTCTTHHH
T ss_pred HHHHHH-hccCccccCCchHHHHHHHHHHH-------HHHHh---------------------hcCCceEeeCCCHHHHH
Confidence 432111 111110 0112222221111110 00000 011234 8999999999
Q ss_pred Hhccc----------cCCc------c--CCCe-EEEecCCCccccceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCC
Q 013082 210 LSYSH----------DGRS------A--LENW-SLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPE 270 (450)
Q Consensus 210 ~~l~~----------~~~~------~--~~~~-~v~~~~g~~~~~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~ 270 (450)
++++. .+.+ . ++++ .|++ +|+ ++.||+||+|+++.. .++ . +
T Consensus 246 ~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~----~~~ad~VV~a~~~~~-~~l---~-----------~ 305 (453)
T 2bcg_G 246 QGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLG----TFKAPLVIADPTYFP-EKC---K-----------S 305 (453)
T ss_dssp HHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTE----EEECSCEEECGGGCG-GGE---E-----------E
T ss_pred HHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCe----EEECCEEEECCCccc-hhh---c-----------c
Confidence 88752 1111 1 2232 3444 343 789999999988752 222 1 1
Q ss_pred CC-CCCeEEEEEEecCCCCCC--CCCCeeEEecCCCCCCCCceEEEEeccCCCCCCCCCCcEEEEEEeCCCCCCcCCCCC
Q 013082 271 VI-YMPLSVIITTFKKENVRR--PLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKAS 347 (450)
Q Consensus 271 ~~-y~~~~~v~l~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~ 347 (450)
.+ + ++..+.+ ++++. +. ....+.++++...-. ..+..-+...|. ....+|+|++++.+++.... .+
T Consensus 306 ~~~~-~~~~~~i-~~~~~-~~~~~~~~~~ii~~~~~~~-~~~~~~v~~~s~-~d~~aP~G~~~~~v~~~~~~------~~ 374 (453)
T 2bcg_G 306 TGQR-VIRAICI-LNHPV-PNTSNADSLQIIIPQSQLG-RKSDIYVAIVSD-AHNVCSKGHYLAIISTIIET------DK 374 (453)
T ss_dssp EEEE-EEEEEEE-ESSCC-TTSTTCSSEEEEECGGGTT-CSSCEEEEEEEG-GGTSSCTTCEEEEEEEECCS------SC
T ss_pred cCCc-ceeEEEE-Ecccc-CCCCCCccEEEEeCccccC-CCCCEEEEEeCC-CCCCCCCCcEEEEEEEecCC------CC
Confidence 11 2 2223333 66553 21 123444555532100 112222222232 22467999888777664321 12
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHHHHHH
Q 013082 348 TDELKQIVTSDLRQLLGVEGDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIASGCKA 427 (450)
Q Consensus 348 ~eel~~~~~~~L~~~~~~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~SG~~a 427 (450)
.++-++.+++.|. +... ..+.+..+. .|. + . ...+|||++|++.....+++|+.+++++
T Consensus 375 ~~~~l~~~~~~l~---~~~~--~~~~~~~~~--~~~---~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (453)
T 2bcg_G 375 PHIELEPAFKLLG---PIEE--KFMGIAELF--EPR---E---------D--GSKDNIYLSRSYDASSHFESMTDDVKDI 433 (453)
T ss_dssp HHHHTHHHHGGGC---SCSE--EEEEEEEEE--EES---S---------C--STTTSEEECCCCCSCSBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---hHHH--hhccchhee--eec---C---------C--CCCCCEEECCCCCccccHHHHHHHHHHH
Confidence 2222333333322 1111 112222211 011 0 0 1126899999998777799999999999
Q ss_pred HHHHH
Q 013082 428 AELVI 432 (450)
Q Consensus 428 A~~i~ 432 (450)
+++|.
T Consensus 434 ~~~~~ 438 (453)
T 2bcg_G 434 YFRVT 438 (453)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 32
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.22 E-value=4.1e-11 Score=119.23 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=136.9
Q ss_pred CeeccCCCCCeeEEEEecC--------------------cEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceE
Q 013082 1 MVFEADERAGGKLRSISKD--------------------GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~--------------------g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (450)
+|+|+++++||++.|++.+ +|.+|++++++... ..+.+++.++|+.+++.+... ...|
T Consensus 47 ~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~~-g~L~~lL~~~gv~~ylef~~~-~~~y 124 (475)
T 3p1w_A 47 LVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVG-GNLVKILKKTRVTNYLEWLVV-EGSY 124 (475)
T ss_dssp EEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEETT-SHHHHHHHHTTCGGGSCEEEC-SEEE
T ss_pred EEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeecC-cHHHHHHHHCCchheeEEEec-Ccce
Confidence 4899999999999998632 57899999977644 578999999999998877543 3456
Q ss_pred EEE---------CCEEeecCCChhHhhhcccCChhHHHHHhccc--cc-cccCC--cccccCCCcCCcHHHHHHHh-hcH
Q 013082 61 VVR---------NGVPFLIPTNPIALLTSNFLSAQSKFQIILEP--FL-WKKSD--SAKVSAEDAKESVGGFFQRH-FGR 125 (450)
Q Consensus 61 ~~~---------~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~s~~~~l~~~-~~~ 125 (450)
++. +|+++++|.+..++++++.+++.+|.++..-. +. ....+ .++ ....++.|+.+|+++. +.+
T Consensus 125 ~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~~~~~~~~-~~~l~~~s~~e~l~~~gls~ 203 (475)
T 3p1w_A 125 VYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWD-NLDPYKLTMLEIYKHFNLCQ 203 (475)
T ss_dssp EEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCTTCGGGST-TCCTTTSBHHHHHHHTTCCH
T ss_pred EEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhhccchhhh-cccccCCCHHHHHHHcCCCH
Confidence 665 67899999998888888999999988754321 11 00000 000 0123678999999873 456
Q ss_pred HHHHHHhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhhhhhhhhhhhhhhcCchhhhcCCccceEeccch
Q 013082 126 EVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM 205 (450)
Q Consensus 126 ~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 205 (450)
.+.+.++.++.-.. ..++.+.++...+.++..+.. |+ +. .......+++||+
T Consensus 204 ~l~~fl~~alaL~~-~~~~~~~~a~~~l~ri~~y~~---Sl--~~----------------------yg~s~~~yp~gG~ 255 (475)
T 3p1w_A 204 LTIDFLGHAVALYL-NDDYLKQPAYLTLERIKLYMQ---SI--SA----------------------FGKSPFIYPLYGL 255 (475)
T ss_dssp HHHHHHHHHTSCCS-SSGGGGSBHHHHHHHHHHHHH---HH--HH----------------------HSSCSEEEETTCT
T ss_pred HHHHHHHHHHHhhc-CCCcccCCHHHHHHHHHHHHH---HH--hh----------------------cCCCceEEECCCH
Confidence 66665545443222 223444565555444332211 10 00 0123456999999
Q ss_pred HHHHHhccc----------cCC------c-cCCC-eEEEecCCCccccceecCEEEEcCCh
Q 013082 206 QVLSLSYSH----------DGR------S-ALEN-WSLCSSNQEKQSLGLSFDAVIMTAPL 248 (450)
Q Consensus 206 ~~l~~~l~~----------~~~------~-~~~~-~~v~~~~g~~~~~~~~ad~VI~t~P~ 248 (450)
+.|++++.. .+. . .+++ +.|++++|+ ++.||+||++...
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~----~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGE----IAYCDKVICDPSY 312 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSC----EEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCc----EEECCEEEECCCc
Confidence 999988742 111 1 1223 457777774 7999999999753
No 33
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.01 E-value=3.9e-10 Score=97.71 Aligned_cols=108 Identities=10% Similarity=0.063 Sum_probs=78.5
Q ss_pred EEEEEEeCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCCCc-eE--EeeccC------CCCCCCCCCHHHHHHHHHHHH
Q 013082 329 YLYTTFVGGSRNKELAKASTDELKQIVTSDLRQLLGVEGDPA-FV--NHFFWS------KAFPLYGRDYDSVLEAIEKME 399 (450)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~eel~~~~~~~L~~~~~~~~~p~-~~--~v~~w~------~a~p~~~~g~~~~~~~~~~~~ 399 (450)
.+|.+|+.+..+..+..++++++++.++++|+++||....+. .+ .+++|. +++..+.+|..... ...+.
T Consensus 37 ~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~--~~~l~ 114 (181)
T 2e1m_C 37 VVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAF--HLDVV 114 (181)
T ss_dssp EEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCGGGGGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHH--HHHHH
T ss_pred EEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCCCcHhhccCcceecccCCCCCCCCcccCcCCCchHHH--HHHHh
Confidence 577788765545556678999999999999999997543443 56 788994 34445567765321 12344
Q ss_pred hhCCCeEEecCCcC--CCChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRG--GLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~--g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
++..+|||||+++. ...|+||+.||.+||++|++.+...
T Consensus 115 ~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~~~ 155 (181)
T 2e1m_C 115 RPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPVGD 155 (181)
T ss_dssp SCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC--
T ss_pred CCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhccC
Confidence 56679999999974 3459999999999999999877543
No 34
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=98.98 E-value=5e-08 Score=100.02 Aligned_cols=261 Identities=11% Similarity=0.071 Sum_probs=147.3
Q ss_pred cCcEEEccCCCccccChHHHHHHHHHcCCCccccccCCCCceEEEECCEEeecCCChhHhhhcccCChhHHHHHhcc---
Q 013082 18 KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILE--- 94 (450)
Q Consensus 18 ~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~~~~~G~~~~~p~~~~~~~~~~~l~~~~~~~~~~~--- 94 (450)
..+|.||+|++.++..+ .+.++|.++|+.+++.+... ...|++.+|+++.+|.+..++++.+.+++.+|.++.+-
T Consensus 221 ~R~f~~DL~PklL~~~g-~lv~LL~~sgV~~yLEFk~v-~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~ 298 (650)
T 1vg0_A 221 GRRFNIDLVSKLLYSRG-LLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTF 298 (650)
T ss_dssp GGGCCEESSCCCEESSS-HHHHHHHHHTGGGGCCEEEC-CEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CCCeEEeeCCeeeeCCc-HHHHHHHHcCCcceeeEEEc-cceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 46899999999888664 58999999999988877433 34677788889999999999998889998888765431
Q ss_pred ccccccCCcccccCCCcCCcHHHHHHHhhc-HHHHHHHhhhhhcccccCCcccchhhccchhHHHHHHhcCChHHHHHhh
Q 013082 95 PFLWKKSDSAKVSAEDAKESVGGFFQRHFG-REVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKS 173 (450)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~~~~l~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~gsl~~g~~~~ 173 (450)
...... .... ....+..|+.+|+++.+. +.+.+.+...+ +++..+ ..++...+..+..+....+.
T Consensus 299 ~~~~~~-~p~~-~~~~d~~S~~d~L~~~~ls~~L~~~L~~~l--al~~~~--~~pa~~~l~~i~~~l~sl~~-------- 364 (650)
T 1vg0_A 299 CVEYEE-HPDE-YRAYEGTTFSEYLKTQKLTPNLQYFVLHSI--AMTSET--TSCTVDGLKATKKFLQCLGR-------- 364 (650)
T ss_dssp HHTGGG-CHHH-HHTTTTSBHHHHHTTSSSCHHHHHHHHHHT--TC--CC--SCBHHHHHHHHHHHHHHTTS--------
T ss_pred HHHhcc-ChHH-HhhhccCCHHHHHHHhCCCHHHHHHHHHHH--hccCCC--CCchhHHHHHHHHHHHHHHh--------
Confidence 111000 0000 014578999999998644 44444443332 333222 12332222222111111000
Q ss_pred hhhhhhhhhhhhcCchhhhcCCccceEeccchHHHHHhccc----------cCCc------cC--CCeE-EEecCCCccc
Q 013082 174 KFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----------DGRS------AL--ENWS-LCSSNQEKQS 234 (450)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----------~~~~------~~--~~~~-v~~~~g~~~~ 234 (450)
..+.+.++++||+++|+++|.. .+.+ .+ +++. |++.+|+
T Consensus 365 -------------------yg~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge--- 422 (650)
T 1vg0_A 365 -------------------YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ--- 422 (650)
T ss_dssp -------------------SSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC---
T ss_pred -------------------hccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCC---
Confidence 0123567999999999988742 1111 12 3343 3345564
Q ss_pred cceecCEEEEcCChhhhhhhhhccCCCCCcCCCCCCCCCCCeEEEEEEecCCCCCCCCC-Cee-EEecCCCCCCCCceEE
Q 013082 235 LGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLE-GFG-VLVPSKEQQNGLKTLG 312 (450)
Q Consensus 235 ~~~~ad~VI~t~P~~~~~~ll~~~~~~p~~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~ 312 (450)
++.||+||++ +..+... . ..++++..+.++.+.++++..+.... ..+ +.+|.... ..+.+-
T Consensus 423 -~i~A~~VVs~--~~~lp~~---------~---~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~~~g--~~~~V~ 485 (650)
T 1vg0_A 423 -RIISKHFIIE--DSYLSEN---------T---CSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVR 485 (650)
T ss_dssp -EEECSEEEEE--GGGBCTT---------T---TTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEE
T ss_pred -EEEcCEEEEC--hhhcCHh---------H---hccccccceEEEEEEecCCCCCcCCCcceEEEEccCccC--CCCCEE
Confidence 8999999992 2222111 1 11235667778888888764322111 223 33455431 122222
Q ss_pred EEeccCCCCCCCCCCcEEEEEE
Q 013082 313 TLFSSMMFPDRVPKDLYLYTTF 334 (450)
Q Consensus 313 ~~~~s~~~~~~~p~g~~~l~~~ 334 (450)
++-.|. -+..+|+|.+++.+.
T Consensus 486 i~~~Ss-~~~~cP~G~~Vv~ls 506 (650)
T 1vg0_A 486 VIELCS-STMTCMKGTYLVHLT 506 (650)
T ss_dssp EEEECG-GGTSSCTTCEEEEEE
T ss_pred EEEeCC-CCCCCCCCCEEEEEE
Confidence 322332 345689998876544
No 35
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.39 E-value=2.4e-07 Score=89.48 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=44.7
Q ss_pred CeeccC-CCCCeeEEEEe----------cCcEEEccCCCccccChHHHHHHHHHcCCCccc
Q 013082 1 MVFEAD-ERAGGKLRSIS----------KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQ 50 (450)
Q Consensus 1 ~vlEa~-~rvGGr~~t~~----------~~g~~~D~G~~~~~~~~~~~~~l~~~lGl~~~~ 50 (450)
+|||++ +++|||++|.+ ..|+.+|.|++++...++.+.++++++|+....
T Consensus 71 ~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~lGl~~~~ 131 (376)
T 2e1m_A 71 TILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALIDKLGLKRRL 131 (376)
T ss_dssp EEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred EEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHHHHcCCCcce
Confidence 589999 99999999997 358999999999987788999999999997654
No 36
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=97.95 E-value=7.5e-06 Score=74.83 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCC-CCCceEEeeccCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEecCCcCCCChHHHHHH
Q 013082 345 KASTDELKQIVTSDLRQLLGVE-GDPAFVNHFFWSKAFPLYGRDYDSVLEAIEKMETNLPGFFYAGNHRGGLSVGKSIAS 423 (450)
Q Consensus 345 ~~~~eel~~~~~~~L~~~~~~~-~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~~~~ai~S 423 (450)
.....+..+.....+....+.. ..+....+++|.+++|........ ..+..+||++|||++.|.++++|+.|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~~~~~~~-------~~~~~~~v~l~GDa~~g~gv~~A~~s 315 (336)
T 3kkj_A 243 DASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWGA-------LSDADLGIYVCGDWCLSGRVEGAWLS 315 (336)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCSS-------EEETTTTEEECCGGGTTSSHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhccCCcCcchheeccceeecccccccCccc-------eeeCCCCEEEEecccCCcCHHHHHHH
Confidence 4566677777777777766544 567888999999887765444321 11234799999999988899999999
Q ss_pred HHHHHHHHHHHhccc
Q 013082 424 GCKAAELVISYLEKS 438 (450)
Q Consensus 424 G~~aA~~i~~~~~~~ 438 (450)
|+.||+.|++.|++-
T Consensus 316 G~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 316 GQEAARRLLEHLQLE 330 (336)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999754
No 37
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.94 E-value=1.2e-06 Score=70.48 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=58.0
Q ss_pred cceecCEEEEcCChhhhhhhhhccCCCCC-cCCCCCCCCCCCeEEEEEEecCCCCCCCCCCeeEEecCCCCCCCCceEEE
Q 013082 235 LGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGT 313 (450)
Q Consensus 235 ~~~~ad~VI~t~P~~~~~~ll~~~~~~p~-~~~~l~~~~y~~~~~v~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 313 (450)
++++||+||+|+|+++++.+. |.|..|. ..+++++++|++..||.+.|++++|+. ++..
T Consensus 4 ~~~~Ad~VIvTvP~~vL~~I~-F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~--~~~~----------------- 63 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLRFVK-VTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEF--TEAD----------------- 63 (130)
T ss_dssp EEEEESEEEECSCHHHHTTSE-EESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGC--CHHH-----------------
T ss_pred eEEEcCEEEEcCCHHHHhcCc-CCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCC--CCcc-----------------
Confidence 478999999999999999986 5554554 567889999999999999999998853 1110
Q ss_pred EeccCCCCCCCCCCcEEEEEEeC-CCCCCcCCCCCHHHHHHHHHHHHHHHh
Q 013082 314 LFSSMMFPDRVPKDLYLYTTFVG-GSRNKELAKASTDELKQIVTSDLRQLL 363 (450)
Q Consensus 314 ~~~s~~~~~~~p~g~~~l~~~~~-~~~~~~~~~~~~eel~~~~~~~L~~~~ 363 (450)
++.+. ++..| + ++.+|++ |..+..|..+++ +-.+.++..|..++
T Consensus 64 -gd~s~-~~~~p-g--~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~ 108 (130)
T 2e1m_B 64 -WKREL-DAIAP-G--LYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAH 108 (130)
T ss_dssp -HHHHH-HHHST-T--HHHHHHHHCCCSCCCC-------------------
T ss_pred -ccccC-CCCCC-e--EEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhC
Confidence 11110 00011 2 5556664 666667777765 56777778888776
No 38
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=94.65 E-value=0.018 Score=51.68 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=36.9
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHc
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDL 44 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~l 44 (450)
+|||+++++|||++|.+..+..+|+|++.+......+......+
T Consensus 29 ~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~ 72 (336)
T 3kkj_A 29 HLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQW 72 (336)
T ss_dssp EEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHH
T ss_pred EEEECCCCCCCcccccccCCceeecCccccccCcHHHHHHHHHH
Confidence 58999999999999999999999999998876666665555544
No 39
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.21 Score=46.76 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=31.0
Q ss_pred HhhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 399 ETNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 399 ~~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.+..||||.|||.. .|+.+-+++.||++||+.|++.|++
T Consensus 280 ~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~laa 326 (326)
T 3fpz_A 280 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 326 (326)
T ss_dssp CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999973 1444567889999999999998863
No 40
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=84.95 E-value=0.54 Score=43.74 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=40.1
Q ss_pred CeeccCCCCCeeEEEEecCcEEEccCCCccccChHHHHHHHHHcCC
Q 013082 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI 46 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~~g~~~D~G~~~~~~~~~~~~~l~~~lGl 46 (450)
+|||+++.+||++.+....+..+|.|.+.+....+.+.+++++++.
T Consensus 29 ~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (336)
T 1yvv_A 29 HLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQA 74 (336)
T ss_dssp EEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHh
Confidence 5899999999999999999999999999888767778888877643
No 41
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=83.51 E-value=10 Score=37.67 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcccchh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEKSSDD 441 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~~~~~ 441 (450)
++++++||+. .|-|++-||.++..+|..|...++.....
T Consensus 301 grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~ 345 (535)
T 3ihg_A 301 GRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGA 345 (535)
T ss_dssp TTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred CCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcH
Confidence 5899999993 57789999999999999998766544333
No 42
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=70.52 E-value=4.1 Score=37.11 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=30.7
Q ss_pred hhCCCeEEecCCcCCC--ChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGL--SVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~--~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
++.||||.|||-..+. .+.-|+.+|..||..|.+.|++
T Consensus 274 Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 274 TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999986543 3678999999999999887753
No 43
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=69.48 E-value=4.4 Score=36.45 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhCCCeEEecCCcC-CCChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRG-GLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~-g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..||||.+||... ...+..|+..|..||..|.+.+..
T Consensus 255 t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 255 TTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp CSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35689999999965 345899999999999999988764
No 44
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=68.81 E-value=4.1 Score=35.62 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.7
Q ss_pred hCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~ 435 (450)
..|+||.+||.. +.+ ...++.+|+.+|+.|++.+
T Consensus 197 ~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 197 RLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceeeeecc-cCccHHHHHHHHHHHHHHHHhhc
Confidence 468999999997 555 4777999999999998876
No 45
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=67.81 E-value=4.7 Score=36.80 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=31.9
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..|+||.+||.... ..+..|+.+|..||..|.+.+...
T Consensus 276 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 276 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHHhc
Confidence 456899999999643 357899999999999999998754
No 46
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=67.61 E-value=2.1 Score=39.96 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=32.3
Q ss_pred CeeccCCCCCeeEEEEec---CcEEEccCCCccccChH---HHHHHHHHc
Q 013082 1 MVFEADERAGGKLRSISK---DGLIWDEGANTMTESEM---EVKGLLDDL 44 (450)
Q Consensus 1 ~vlEa~~rvGGr~~t~~~---~g~~~D~G~~~~~~~~~---~~~~l~~~l 44 (450)
+|||+++.+|||+.+.+. .+..+|.|++.+..... .+.++++++
T Consensus 31 ~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~ 80 (342)
T 3qj4_A 31 AVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL 80 (342)
T ss_dssp EEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred EEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence 589999999999998875 45789999997754332 344555544
No 47
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=67.61 E-value=5 Score=36.52 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=31.7
Q ss_pred hCCCeEEecCCcC----CCChHHHHHHHHHHHHHHHHHhccc
Q 013082 401 NLPGFFYAGNHRG----GLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 401 ~~~~l~~aG~~~~----g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..+|||.+||... ...+..|+.+|..||..|.+.+...
T Consensus 278 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 278 SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHh
Confidence 4689999999965 2458999999999999999888654
No 48
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=67.43 E-value=5.1 Score=36.40 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=31.1
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||.... ..+..|+.+|..||..|.+.+..
T Consensus 267 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 306 (310)
T 1fl2_A 267 TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIR 306 (310)
T ss_dssp CSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHH
Confidence 346899999999643 35789999999999999988753
No 49
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=66.72 E-value=4.7 Score=36.83 Aligned_cols=39 Identities=36% Similarity=0.638 Sum_probs=31.4
Q ss_pred HhhCCCeEEecCCcC-CC-ChHHHHHHHHHHHHHHHHHhcc
Q 013082 399 ETNLPGFFYAGNHRG-GL-SVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 399 ~~~~~~l~~aG~~~~-g~-~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.++.||||.+||-.. +. .+..|+..|+.||..|.+.++.
T Consensus 267 ~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 267 TTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp BCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999863 33 4789999999999999877754
No 50
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=66.63 E-value=2.7 Score=40.43 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred hCCCeEEecCCc------CCCChHHHHHHHHHHHHHHHH
Q 013082 401 NLPGFFYAGNHR------GGLSVGKSIASGCKAAELVIS 433 (450)
Q Consensus 401 ~~~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~ 433 (450)
..|||||||+-+ .|+.+.-|+.||+.|++.+.+
T Consensus 362 ~~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 362 QVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp SSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 478999999863 566789999999999998743
No 51
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=65.80 E-value=3.4 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=28.8
Q ss_pred hCCCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 401 NLPGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 401 ~~~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
.+||||+||+-+ .|.++..|+.+|+.|++.+.+..
T Consensus 403 ~i~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~ 443 (447)
T 2i0z_A 403 FTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA 443 (447)
T ss_dssp SSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999773 45668999999999999987654
No 52
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=65.44 E-value=5.8 Score=36.41 Aligned_cols=38 Identities=39% Similarity=0.564 Sum_probs=31.7
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||.... ..+..|+.+|..||..|.+.+..
T Consensus 297 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 297 TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhc
Confidence 456899999999732 45799999999999999998864
No 53
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=63.92 E-value=4.5 Score=37.62 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.6
Q ss_pred hCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
-+|+||++|... -|+.+-+-+.||++||+.|++.|.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence 578999999873 355567888999999999998874
No 54
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=63.75 E-value=7.1 Score=35.65 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=31.3
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||.... ..+..|+..|..||..|.+.+..
T Consensus 278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 317 (319)
T 3cty_A 278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSIS 317 (319)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 356899999999643 35799999999999999988753
No 55
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=61.99 E-value=5.2 Score=37.49 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=31.5
Q ss_pred hhCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+-+||||++|... -|+-.-+-+.||++||+.|++.|...
T Consensus 291 ~v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~~~ 337 (344)
T 3jsk_A 291 EIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFDLR 337 (344)
T ss_dssp EEETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEcCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHHhh
Confidence 3468999999883 35666788899999999999988643
No 56
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=59.88 E-value=6.6 Score=38.42 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=38.8
Q ss_pred hhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccchhhhhhc
Q 013082 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLKE 446 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~~~~~ 446 (450)
+..|+||++||-..+..++-|-..|+.+|+.+......++...|.++
T Consensus 305 t~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~ 351 (464)
T 2xve_A 305 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKAD 351 (464)
T ss_dssp SSSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHH
T ss_pred CCCCCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 35689999999766666788999999999999988888888888643
No 57
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=59.82 E-value=7.6 Score=36.42 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|++++||+. .|.|++-|+.+|..+|+.|.+.+..
T Consensus 277 ~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~ 317 (397)
T 3oz2_A 277 PGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIES 317 (397)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHc
Confidence 5899999983 5778999999999999999876643
No 58
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=59.81 E-value=8.2 Score=34.92 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=31.1
Q ss_pred hhCCCeEEecCCcC-C-CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRG-G-LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~-g-~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..+|||.+||... + ..+..|+..|..||..|.+.+..
T Consensus 274 t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 313 (315)
T 3r9u_A 274 TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIES 313 (315)
T ss_dssp CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHHHh
Confidence 35689999999952 2 35899999999999999988753
No 59
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=59.45 E-value=9.8 Score=31.34 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=30.7
Q ss_pred hhCCCeEEecCCcCCC--ChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGL--SVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~--~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||-.... .+..|+..|..||..|...++.
T Consensus 133 t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 172 (180)
T 2ywl_A 133 TSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLRG 172 (180)
T ss_dssp CSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhhh
Confidence 3558999999996433 5789999999999999887653
No 60
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=58.02 E-value=8.8 Score=35.21 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=31.2
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||.... .....|+..|..||..|.+.+..
T Consensus 285 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 324 (333)
T 1vdc_A 285 TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 324 (333)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHHh
Confidence 356899999999643 45789999999999999988853
No 61
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=57.87 E-value=10 Score=34.34 Aligned_cols=36 Identities=44% Similarity=0.484 Sum_probs=30.3
Q ss_pred hCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
..|+||.+||...+ ..+..|+..|..||..|.+.++
T Consensus 272 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 272 NVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLE 309 (311)
T ss_dssp SSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHh
Confidence 56899999999753 3579999999999999988774
No 62
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=57.48 E-value=8.6 Score=37.59 Aligned_cols=38 Identities=39% Similarity=0.469 Sum_probs=31.9
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..++||.+||...+.. +..|+..|+.||..|...+..
T Consensus 407 Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 407 TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 45689999999976554 799999999999999988754
No 63
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=56.66 E-value=4.4 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=24.4
Q ss_pred hCCCeEEecCC------cCCCChHHHHHHHHHHHHH
Q 013082 401 NLPGFFYAGNH------RGGLSVGKSIASGCKAAEL 430 (450)
Q Consensus 401 ~~~~l~~aG~~------~~g~~~~~ai~SG~~aA~~ 430 (450)
..|||||||+- +.|+.+.-|..||+.|++.
T Consensus 381 ~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 381 EVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 45899999965 3566789999999988864
No 64
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=53.32 E-value=13 Score=33.94 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=31.2
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||.... ..+..|+..|..||..|...+..
T Consensus 274 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 313 (325)
T 2q7v_A 274 TNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAA 313 (325)
T ss_dssp CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999643 35799999999999999988753
No 65
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=52.16 E-value=13 Score=33.83 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=31.7
Q ss_pred hhCCCeEEecCCc---CCC-ChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHR---GGL-SVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~---~g~-~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..+|||.+||.. .+. .+..|+..|..||..|.+.+...
T Consensus 275 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 275 TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhChh
Confidence 3568999999995 223 47999999999999999988654
No 66
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=51.58 E-value=13 Score=34.09 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=31.4
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..|+||.+||.... .....|+.+|..||..|.+.+...
T Consensus 278 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~~~ 318 (335)
T 2a87_A 278 TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEH 318 (335)
T ss_dssp CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 456899999999643 347889999999999999877543
No 67
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=51.51 E-value=9.6 Score=34.58 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=30.0
Q ss_pred hhCCCeEEecCCc-CCC-ChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR-GGL-SVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~-~g~-~~~~ai~SG~~aA~~i~~~~~ 436 (450)
++.||||.|||-. .+. .+..|+.+|..||..|.+.|.
T Consensus 262 Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 262 TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999985 233 378899999999999988774
No 68
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=50.67 E-value=11 Score=34.75 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhCCCeEEecC--CcC-C-CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGN--HRG-G-LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~--~~~-g-~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..||||.+|| ... + ..+..|+..|..+|+.|.+.++.
T Consensus 312 t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 312 LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 46789999994 442 2 34788999999999999999876
No 69
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=46.72 E-value=12 Score=37.51 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=30.4
Q ss_pred hCCCeEEecCCcC-CCChHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRG-GLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~-g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.++|||.|||... ..||-.|-.+|.++|+.|+..+..
T Consensus 507 ~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~~~~~ 544 (549)
T 3nlc_A 507 NLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVA 544 (549)
T ss_dssp TCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEccccCChhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999942 236999999999999999988753
No 70
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=42.45 E-value=25 Score=32.05 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=30.5
Q ss_pred hhCCCeEEecCCcC--C--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRG--G--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~--g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..|+||.+||... + ..+..|+..|..||..|...+..
T Consensus 277 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (335)
T 2zbw_A 277 TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYANP 318 (335)
T ss_dssp CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 35689999999852 2 24689999999999999988754
No 71
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=40.66 E-value=22 Score=36.27 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=29.1
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
..+||||||+-....|.+.|..+|..|+..+.....
T Consensus 377 ~~~gLf~AGqi~g~~Gy~eA~a~G~~AG~naa~~~~ 412 (641)
T 3cp8_A 377 PVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKIL 412 (641)
T ss_dssp SSBTEEECSGGGTBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEEeecCCccHHHHHHHHHHHHHHHHHHhc
Confidence 368999999997656788999999999888765543
No 72
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=40.35 E-value=19 Score=32.39 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=31.3
Q ss_pred hCCCeEEecCCc--------CCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 401 NLPGFFYAGNHR--------GGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 401 ~~~~l~~aG~~~--------~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..|++|.+|+.. .++.+.+++.||..+|..|.+.|+..
T Consensus 232 ~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~ 277 (284)
T 1rp0_A 232 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLP 277 (284)
T ss_dssp EETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhh
Confidence 458999999873 35668999999999999999988543
No 73
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=39.47 E-value=25 Score=34.79 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=31.2
Q ss_pred hhCCCeEEecCCcCC--CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG--LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g--~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..||||.+||.... ..+..|+.+|..||..|.+.+..
T Consensus 478 ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~~ 517 (521)
T 1hyu_A 478 TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIR 517 (521)
T ss_dssp CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHHh
Confidence 456899999999643 35799999999999999987754
No 74
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=37.13 E-value=33 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=30.8
Q ss_pred hhCCCeEEecCCcC--C--CChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRG--G--LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~--g--~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..|+||.+||... + ..+..|+..|..||+.|...+...
T Consensus 288 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 288 TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcCCc
Confidence 35689999999852 2 246889999999999999877543
No 75
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=36.13 E-value=29 Score=32.14 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.7
Q ss_pred hCCCeEEecCCcCC-----CChHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 013082 401 NLPGFFYAGNHRGG-----LSVGKSIASGCKAAELVISYLEKSSDDKMLK 445 (450)
Q Consensus 401 ~~~~l~~aG~~~~g-----~~~~~ai~SG~~aA~~i~~~~~~~~~~~~~~ 445 (450)
..|+||.+||.... ..+..+-..|..+|+.|...++.++...|++
T Consensus 299 ~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~ 348 (369)
T 3d1c_A 299 RYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIE 348 (369)
T ss_dssp SSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHH
Confidence 46799999998522 2345666778889999998888776655664
No 76
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=35.82 E-value=38 Score=32.37 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=30.8
Q ss_pred hCCCeEEecCCcCC-------------CChHHHHHHHHHHHHHHHHHhccc
Q 013082 401 NLPGFFYAGNHRGG-------------LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 401 ~~~~l~~aG~~~~g-------------~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..||||.+||.... .....|+..|..||+.|.+.+...
T Consensus 285 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~g~ 335 (430)
T 3h28_A 285 TYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp SSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 56899999998532 136889999999999999988654
No 77
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=35.24 E-value=25 Score=33.95 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=36.3
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKSSDDKMLK 445 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~~~~~~~~ 445 (450)
..|+|+++|+.......+-|...|..+|+.|....+.++...|.+
T Consensus 327 ~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~ 371 (447)
T 2gv8_A 327 PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 371 (447)
T ss_dssp TCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHH
T ss_pred CCCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 457999999986544568888999999999988888888777765
No 78
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=34.34 E-value=36 Score=34.78 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.0
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
..+||||||.-..-.|-+.|..+|..|+..+......
T Consensus 383 ~~~gLf~AGqinGttGYeEAaaqGl~AG~nAa~~~~~ 419 (651)
T 3ces_A 383 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSAD 419 (651)
T ss_dssp SSBTEEECSGGGTCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHHHHHHHHhcC
Confidence 3579999998865557889999999988887765543
No 79
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=32.31 E-value=43 Score=31.68 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.3
Q ss_pred hCCCeEEecCCcC--C-CChHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRG--G-LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~--g-~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
..||||.+||... . .....|...|..||+.|...+..
T Consensus 298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l~~ 337 (409)
T 3h8l_A 298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGV 337 (409)
T ss_dssp SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999963 2 34688999999999999998833
No 80
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=32.25 E-value=44 Score=32.05 Aligned_cols=38 Identities=16% Similarity=-0.049 Sum_probs=30.6
Q ss_pred hCCCeEEecCCcCC-------------CChHHHHHHHHHHHHHHHHHhccc
Q 013082 401 NLPGFFYAGNHRGG-------------LSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 401 ~~~~l~~aG~~~~g-------------~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
..||||.+||.... .....|+..|..+|+.|.+.+...
T Consensus 296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~ 346 (437)
T 3sx6_A 296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGR 346 (437)
T ss_dssp SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57899999998531 135789999999999999988654
No 81
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=29.22 E-value=48 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=30.2
Q ss_pred hhCCCeEEecCCcCC----CChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGG----LSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g----~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..||||-+||...+ ...+-|...|..+|+.|++.++.
T Consensus 284 t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G 325 (401)
T 3vrd_B 284 SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKG 325 (401)
T ss_dssp SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 356899999998633 23578999999999999988754
No 82
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=28.98 E-value=47 Score=35.82 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=32.6
Q ss_pred hhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhccc
Q 013082 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEKS 438 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~~ 438 (450)
+..|+||.+||.....++..|+..|..||..|...+...
T Consensus 408 ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~~lg~~ 446 (965)
T 2gag_A 408 DAVANQHLAGAMTGRLDTASALSTGAATGAAAATAAGFA 446 (965)
T ss_dssp SCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEecCCchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 356899999999765667899999999999999888643
No 83
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=28.66 E-value=43 Score=36.37 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=30.8
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+..++||.+||...+. .+..|+..|+.||+.|...+.
T Consensus 471 Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 471 TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999997654 369999999999999998764
No 84
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=28.26 E-value=23 Score=36.55 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=31.6
Q ss_pred hhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+..++||.+||......+..|+..|..||..|...+..
T Consensus 639 t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l~g 676 (690)
T 3k30_A 639 GEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVLPS 676 (690)
T ss_dssp TSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhccC
Confidence 35789999999976556788999999999999887643
No 85
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=27.22 E-value=52 Score=33.51 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 402 ~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
.+||||||+-..-.|-++|..+|..|+......+.
T Consensus 389 ~~gLf~AGqinGt~GyeEAaaqGl~AG~nAa~~~~ 423 (637)
T 2zxi_A 389 IRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAF 423 (637)
T ss_dssp SBTEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeeecCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 57999999997556788999999888877765543
No 86
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=27.15 E-value=54 Score=32.96 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=29.5
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+|+.++||+. .|-|++-|+.+|..+|+.|...++
T Consensus 347 ~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~ 386 (584)
T 2gmh_A 347 PGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLT 386 (584)
T ss_dssp TTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 6899999983 467899999999999999988764
No 87
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=26.36 E-value=58 Score=31.33 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=29.1
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+|+.++||+. .|.|+.-|+.+|..+|+.|.+.+.
T Consensus 282 ~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~ 321 (453)
T 3atr_A 282 NGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFE 321 (453)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 5899999982 577899999999999999987653
No 88
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=26.33 E-value=26 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=28.1
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-.|+..|+.|++.+.+..
T Consensus 519 ~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~~ 563 (566)
T 1qo8_A 519 KPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHA 563 (566)
T ss_dssp CEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 5788999999873 23346789999999999987654
No 89
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=26.27 E-value=35 Score=33.16 Aligned_cols=36 Identities=14% Similarity=0.447 Sum_probs=29.4
Q ss_pred CCCeEEecCCcCCC-C-hHHHHHHHHHHHHHHHHHhcc
Q 013082 402 LPGFFYAGNHRGGL-S-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 402 ~~~l~~aG~~~~g~-~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.|+||.+||-..++ + +..|+..|..+|+.|..++..
T Consensus 359 ~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l~~ 396 (460)
T 1cjc_A 359 VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKA 396 (460)
T ss_dssp CTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999986433 2 678999999999999988754
No 90
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=26.10 E-value=68 Score=31.33 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=30.1
Q ss_pred CCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 402 LPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 402 ~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
.++||.+||......+..|+..|..||..|...+..
T Consensus 343 ~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg~ 378 (493)
T 1y56_A 343 KDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFGY 378 (493)
T ss_dssp ETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 478999999975445789999999999999987743
No 91
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=25.96 E-value=50 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+. ..+.|+..|..||+.|..
T Consensus 303 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 303 TSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp CSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 4568999999997543 358999999999999986
No 92
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=25.41 E-value=26 Score=35.11 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=28.1
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-.|+..|+.|++.+.+..
T Consensus 524 ~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~ 568 (571)
T 1y0p_A 524 QVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568 (571)
T ss_dssp CEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 5789999999873 23457789999999999987643
No 93
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=25.39 E-value=51 Score=31.96 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||...++ ..+.|+..|..||+.|...
T Consensus 308 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (476)
T 3lad_A 308 TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGH 343 (476)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 5678999999997444 3689999999999999753
No 94
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=25.36 E-value=51 Score=31.88 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=28.9
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||...+.. .+.|+..|..||+.|...
T Consensus 296 t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 296 TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 46689999999875443 689999999999999854
No 95
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=25.08 E-value=46 Score=31.94 Aligned_cols=36 Identities=22% Similarity=0.101 Sum_probs=27.9
Q ss_pred hCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHhc
Q 013082 401 NLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
..+||||||+-..-.|.+.|..+|..|+..+...+.
T Consensus 327 ~~~~Lf~AGqi~G~~Gy~eAaa~Gl~AG~naa~~~~ 362 (443)
T 3g5s_A 327 EAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKAL 362 (443)
T ss_dssp TEEEEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEECccccccHHHHHHHHhHHHHHHHHHHHhc
Confidence 357999999997546788999999888877765543
No 96
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=24.46 E-value=53 Score=31.95 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||...+.. .+.|+..|..||+.|...
T Consensus 316 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 316 TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 45689999999975443 689999999999999864
No 97
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=24.28 E-value=36 Score=33.93 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCc-C---------CCChHHHHHHHHHHHHHHHHHhc
Q 013082 400 TNLPGFFYAGNHR-G---------GLSVGKSIASGCKAAELVISYLE 436 (450)
Q Consensus 400 ~~~~~l~~aG~~~-~---------g~~~~~ai~SG~~aA~~i~~~~~ 436 (450)
+++||||.||+.. . |.++-.|+..|+.|++.+.+...
T Consensus 365 t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 411 (540)
T 1chu_A 365 TDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMP 411 (540)
T ss_dssp CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999873 1 23467799999999999877653
No 98
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=24.16 E-value=37 Score=32.97 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=29.1
Q ss_pred hCCCeEEecCCcCCC-C-hHHHHHHHHHHHHHHHHHhcc
Q 013082 401 NLPGFFYAGNHRGGL-S-VGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 401 ~~~~l~~aG~~~~g~-~-~~~ai~SG~~aA~~i~~~~~~ 437 (450)
..||||.+||-..++ + +..|+..|..+|+.|+.++..
T Consensus 350 ~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l~~ 388 (456)
T 1lqt_A 350 GSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGN 388 (456)
T ss_dssp TCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999985433 2 567999999999999987743
No 99
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=23.67 E-value=56 Score=31.70 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=28.8
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~ 434 (450)
+..||||.+||...+. ..+.|+..|..||+.|...
T Consensus 321 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 321 TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 4568999999997443 3689999999999999864
No 100
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=23.44 E-value=60 Score=31.40 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=28.9
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||..... ..+.|+..|..||+.|...
T Consensus 298 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 298 TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 4568999999997543 4689999999999999854
No 101
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.37 E-value=29 Score=34.83 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=28.2
Q ss_pred hhCCCeEEecCCc---------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHR---------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~---------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+++||||-||+.. .|.++-.|+..|+.|++.+.+..
T Consensus 525 ~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~ 569 (572)
T 1d4d_A 525 KPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA 569 (572)
T ss_dssp SEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 5789999999873 23357789999999999987543
No 102
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=23.04 E-value=63 Score=31.31 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=28.4
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+.. .+.|+..|..||+.|..
T Consensus 315 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 315 SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 45689999999975443 68999999999999986
No 103
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=22.84 E-value=60 Score=31.31 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=28.3
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+.. .+.|+..|..||+.|..
T Consensus 299 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 299 TNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 45689999999975443 68899999999999985
No 104
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=22.37 E-value=92 Score=28.86 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=28.3
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHh
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+|+.++||.. .|.|++-|+.+|..+|+.|.+.+
T Consensus 277 ~~v~liGDAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~ 315 (397)
T 3cgv_A 277 PGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEccccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999982 57789999999999999888765
No 105
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=22.36 E-value=31 Score=35.81 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=29.6
Q ss_pred hhCCCeEEecCCcCCCChHHHHHHHHHHHHHHHHHh
Q 013082 400 TNLPGFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
+..++||.+||......+..|+..|..||..|...+
T Consensus 664 t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 664 NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp GTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred cCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 456899999998754457889999999999997654
No 106
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=22.10 E-value=63 Score=30.13 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=29.5
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcccc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEKSS 439 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~~~ 439 (450)
+++.++||+. .|-|++-||+.|...|..|...+....
T Consensus 311 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~ 353 (412)
T 4hb9_A 311 STVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHE 353 (412)
T ss_dssp CSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5799999992 467899999999999998877655433
No 107
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=22.04 E-value=58 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=25.8
Q ss_pred CeEEecCCcCCCChHHHHHHHHHHHHHHHHHh
Q 013082 404 GFFYAGNHRGGLSVGKSIASGCKAAELVISYL 435 (450)
Q Consensus 404 ~l~~aG~~~~g~~~~~ai~SG~~aA~~i~~~~ 435 (450)
-|++|+.+ .|....+.+..|+++|+.|+...
T Consensus 119 ~LhlAM~Y-dG~~~a~v~K~Gl~~Ae~iI~wv 149 (157)
T 3mfn_A 119 QLHLVMAY-DGVGDAEVVKLGFQRAEIIIDWV 149 (157)
T ss_dssp HHCCCCCC-TCCCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cCcchHHHHHHHHHHHHHHHHHH
Confidence 47788776 56778999999999999998765
No 108
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=21.96 E-value=61 Score=31.55 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=28.6
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||...++ ..+.|+..|..||+.|...
T Consensus 328 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 363 (491)
T 3urh_A 328 TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQ 363 (491)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCC
Confidence 4568999999997443 4699999999999999753
No 109
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=21.95 E-value=67 Score=30.99 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=28.2
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+.. .+.|+..|..||+.|..
T Consensus 307 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 307 TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 45689999999975443 68899999999999975
No 110
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=21.69 E-value=67 Score=30.89 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=28.1
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+. ..+.|+..|..+|+.|..
T Consensus 293 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 293 TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 4568999999986433 468999999999999985
No 111
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=21.49 E-value=67 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=28.1
Q ss_pred hhCCCeEEecCCcCCC-ChHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGL-SVGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~-~~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+. ..+.|+..|..||+.|..
T Consensus 312 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcC
Confidence 4568999999996433 468999999999999985
No 112
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=21.10 E-value=73 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.9
Q ss_pred CCeEEecCCc------CCCChHHHHHHHHHHHHHHHHHhcc
Q 013082 403 PGFFYAGNHR------GGLSVGKSIASGCKAAELVISYLEK 437 (450)
Q Consensus 403 ~~l~~aG~~~------~g~~~~~ai~SG~~aA~~i~~~~~~ 437 (450)
+|+.++||+. .|.|+.-|+.+|..+|+.|.+.+..
T Consensus 288 ~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~ 328 (421)
T 3nix_A 288 DGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKG 328 (421)
T ss_dssp TTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999983 5778999999999999999887654
No 113
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=20.24 E-value=71 Score=30.70 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=28.2
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVIS 433 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~ 433 (450)
+..|+||.+||...+.. .+.|+..|..||+.|..
T Consensus 298 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 298 TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 45689999999975443 68899999999999975
No 114
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=20.00 E-value=72 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred hhCCCeEEecCCcCCCC-hHHHHHHHHHHHHHHHHH
Q 013082 400 TNLPGFFYAGNHRGGLS-VGKSIASGCKAAELVISY 434 (450)
Q Consensus 400 ~~~~~l~~aG~~~~g~~-~~~ai~SG~~aA~~i~~~ 434 (450)
+..|+||.+||...+.. .+.|+..|..||+.|...
T Consensus 310 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 310 TKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 45689999999975443 588999999999999853
Done!