Query 013083
Match_columns 450
No_of_seqs 384 out of 2703
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 00:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 3.8E-99 8E-104 755.5 39.3 428 6-446 2-439 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 9.5E-39 2.1E-43 311.3 16.7 214 201-420 144-366 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-35 2.7E-40 308.0 16.8 211 202-421 428-647 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 3.2E-35 7E-40 297.1 14.6 207 204-420 300-515 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-33 2.5E-38 289.8 19.8 210 203-421 506-728 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 3.9E-34 8.4E-39 293.3 15.0 223 205-438 187-419 (802)
7 KOG0731 AAA+-type ATPase conta 100.0 1.2E-32 2.5E-37 293.7 18.1 213 202-420 305-527 (774)
8 KOG0736 Peroxisome assembly fa 100.0 6.6E-32 1.4E-36 282.9 19.3 229 203-441 667-906 (953)
9 KOG0727 26S proteasome regulat 100.0 1.7E-31 3.6E-36 249.3 14.1 211 204-420 151-370 (408)
10 PTZ00454 26S protease regulato 100.0 2.2E-30 4.7E-35 265.6 19.7 214 202-421 139-361 (398)
11 KOG0728 26S proteasome regulat 100.0 5.1E-31 1.1E-35 245.8 12.2 214 201-420 140-362 (404)
12 KOG0726 26S proteasome regulat 100.0 1.8E-31 3.8E-36 253.4 9.1 215 199-419 176-399 (440)
13 KOG0735 AAA+-type ATPase [Post 100.0 3.7E-30 8E-35 267.6 17.9 214 199-421 656-880 (952)
14 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-30 3.6E-35 255.2 13.0 207 205-420 209-426 (491)
15 COG0465 HflB ATP-dependent Zn 100.0 9.2E-30 2E-34 267.4 15.5 233 203-442 145-398 (596)
16 TIGR03689 pup_AAA proteasome A 100.0 3.1E-29 6.7E-34 262.3 16.9 183 202-392 176-380 (512)
17 PRK03992 proteasome-activating 100.0 7.7E-29 1.7E-33 254.7 19.0 214 202-421 125-347 (389)
18 COG1223 Predicted ATPase (AAA+ 100.0 2.7E-29 5.9E-34 235.4 13.5 205 203-421 116-329 (368)
19 TIGR01241 FtsH_fam ATP-depende 100.0 5.8E-29 1.3E-33 263.5 17.8 212 202-420 49-269 (495)
20 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-28 2.6E-33 272.3 20.5 209 204-420 449-666 (733)
21 PTZ00361 26 proteosome regulat 100.0 7.8E-29 1.7E-33 255.9 16.8 216 199-420 174-398 (438)
22 KOG0652 26S proteasome regulat 100.0 8.1E-29 1.8E-33 232.3 13.8 207 203-415 166-381 (424)
23 KOG0739 AAA+-type ATPase [Post 100.0 2.7E-29 5.9E-34 239.2 10.1 200 205-415 130-339 (439)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 3.4E-28 7.3E-33 254.6 17.7 204 204-420 224-438 (489)
25 CHL00176 ftsH cell division pr 100.0 1.2E-27 2.7E-32 257.6 18.1 212 202-420 177-397 (638)
26 COG0464 SpoVK ATPases of the A 100.0 3.5E-27 7.5E-32 250.1 20.2 211 202-421 236-457 (494)
27 KOG0729 26S proteasome regulat 99.9 7.5E-28 1.6E-32 226.4 12.2 214 199-420 168-392 (435)
28 PF14363 AAA_assoc: Domain ass 99.9 2E-27 4.4E-32 197.1 11.1 97 28-125 1-98 (98)
29 PLN00020 ribulose bisphosphate 99.9 1.1E-26 2.4E-31 230.4 17.9 178 233-419 139-339 (413)
30 TIGR01242 26Sp45 26S proteasom 99.9 2.4E-26 5.3E-31 234.6 18.3 214 201-420 115-337 (364)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.4E-26 2.9E-31 262.5 15.7 197 230-439 1618-1882(2281)
32 KOG0651 26S proteasome regulat 99.9 1.4E-26 3E-31 222.1 11.9 203 205-415 129-342 (388)
33 KOG0737 AAA+-type ATPase [Post 99.9 5.7E-26 1.2E-30 223.2 13.5 207 206-421 90-306 (386)
34 PRK10733 hflB ATP-dependent me 99.9 1.3E-25 2.9E-30 243.8 16.9 211 204-421 148-367 (644)
35 TIGR01243 CDC48 AAA family ATP 99.9 2E-24 4.3E-29 238.8 19.2 208 203-419 173-389 (733)
36 KOG0730 AAA+-type ATPase [Post 99.9 2.2E-23 4.8E-28 217.2 17.1 207 203-421 180-396 (693)
37 KOG0732 AAA+-type ATPase conta 99.9 1.6E-23 3.5E-28 229.2 15.5 208 203-419 260-482 (1080)
38 KOG0740 AAA+-type ATPase [Post 99.9 1.1E-23 2.3E-28 213.7 13.0 212 201-422 146-367 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 1.4E-23 3E-28 212.9 11.7 221 205-436 216-461 (744)
40 PF05496 RuvB_N: Holliday junc 99.8 2E-19 4.2E-24 168.4 19.1 192 201-421 17-223 (233)
41 KOG0742 AAA+-type ATPase [Post 99.8 6.1E-20 1.3E-24 181.8 10.5 221 155-392 297-530 (630)
42 PF00004 AAA: ATPase family as 99.8 5.9E-20 1.3E-24 159.1 8.3 123 245-376 1-132 (132)
43 KOG0744 AAA+-type ATPase [Post 99.8 3.9E-19 8.5E-24 171.8 10.1 179 206-391 140-341 (423)
44 PRK00080 ruvB Holliday junctio 99.8 2.1E-17 4.5E-22 166.5 18.3 192 201-420 18-224 (328)
45 TIGR02881 spore_V_K stage V sp 99.8 3.9E-17 8.5E-22 159.4 19.5 176 207-400 5-201 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 7.4E-17 1.6E-21 159.3 17.9 174 208-398 23-217 (287)
47 PF05673 DUF815: Protein of un 99.7 2.4E-16 5.2E-21 149.5 20.1 179 192-398 13-215 (249)
48 TIGR02880 cbbX_cfxQ probable R 99.7 8.8E-17 1.9E-21 158.7 17.2 172 209-397 23-215 (284)
49 PRK04195 replication factor C 99.7 1.8E-16 3.8E-21 167.7 19.2 165 193-393 3-176 (482)
50 TIGR00635 ruvB Holliday juncti 99.7 1.1E-16 2.4E-21 159.3 16.3 182 206-415 2-198 (305)
51 COG2255 RuvB Holliday junction 99.7 1.3E-16 2.9E-21 152.3 15.2 193 201-422 19-226 (332)
52 COG2256 MGS1 ATPase related to 99.7 4.5E-17 9.9E-22 162.2 12.2 194 201-440 17-219 (436)
53 PHA02544 44 clamp loader, smal 99.7 1.2E-15 2.5E-20 152.8 19.6 158 192-390 9-173 (316)
54 PRK14962 DNA polymerase III su 99.7 6.9E-16 1.5E-20 161.8 17.4 154 201-391 7-190 (472)
55 PLN03025 replication factor C 99.7 7.9E-16 1.7E-20 154.5 16.7 158 193-392 2-173 (319)
56 TIGR00763 lon ATP-dependent pr 99.7 1.7E-15 3.7E-20 168.5 20.1 158 209-390 321-505 (775)
57 PRK14956 DNA polymerase III su 99.7 8.1E-16 1.8E-20 159.6 16.3 156 201-393 11-196 (484)
58 PRK06893 DNA replication initi 99.7 1.6E-15 3.4E-20 145.3 16.9 205 199-449 7-219 (229)
59 PRK12323 DNA polymerase III su 99.7 5.1E-16 1.1E-20 164.9 13.5 180 201-417 9-224 (700)
60 PRK07003 DNA polymerase III su 99.7 2.3E-15 4.9E-20 161.9 17.8 158 200-394 8-195 (830)
61 KOG2004 Mitochondrial ATP-depe 99.6 6.4E-15 1.4E-19 154.9 18.4 159 208-390 411-596 (906)
62 PRK14960 DNA polymerase III su 99.6 2.7E-15 5.9E-20 159.8 15.7 159 201-396 8-196 (702)
63 PRK06645 DNA polymerase III su 99.6 6.6E-15 1.4E-19 155.2 18.3 187 192-419 9-230 (507)
64 PRK14961 DNA polymerase III su 99.6 6.7E-15 1.5E-19 150.3 17.1 178 201-415 9-217 (363)
65 PRK13342 recombination factor 99.6 7.3E-15 1.6E-19 152.6 17.5 151 201-392 5-166 (413)
66 PRK08084 DNA replication initi 99.6 9.9E-15 2.1E-19 140.3 16.5 202 201-449 15-225 (235)
67 PRK08727 hypothetical protein; 99.6 1.6E-14 3.4E-19 138.8 17.6 202 199-449 10-220 (233)
68 COG0466 Lon ATP-dependent Lon 99.6 2.1E-14 4.5E-19 151.9 18.6 159 208-390 323-508 (782)
69 PRK14958 DNA polymerase III su 99.6 6.5E-15 1.4E-19 156.0 14.8 158 201-395 9-196 (509)
70 KOG0735 AAA+-type ATPase [Post 99.6 8.7E-15 1.9E-19 153.7 14.8 193 208-416 408-614 (952)
71 PRK14964 DNA polymerase III su 99.6 1.2E-14 2.6E-19 152.3 15.7 160 201-397 6-195 (491)
72 COG2607 Predicted ATPase (AAA+ 99.6 2.4E-14 5.3E-19 133.9 15.8 173 199-397 51-246 (287)
73 TIGR02397 dnaX_nterm DNA polym 99.6 1.6E-14 3.5E-19 146.6 15.6 181 201-418 7-218 (355)
74 KOG0989 Replication factor C, 99.6 1.2E-14 2.5E-19 140.5 13.5 156 193-390 25-201 (346)
75 PRK07994 DNA polymerase III su 99.6 2.1E-14 4.6E-19 154.5 16.1 156 201-393 9-194 (647)
76 TIGR03420 DnaA_homol_Hda DnaA 99.6 4.2E-14 9E-19 134.5 16.5 158 199-390 6-172 (226)
77 PRK05563 DNA polymerase III su 99.6 3.4E-14 7.3E-19 152.4 17.1 158 201-395 9-196 (559)
78 PRK14949 DNA polymerase III su 99.6 3E-14 6.6E-19 155.9 16.4 156 201-393 9-194 (944)
79 PRK14963 DNA polymerase III su 99.6 5.5E-14 1.2E-18 148.7 17.9 158 201-395 7-193 (504)
80 PRK08691 DNA polymerase III su 99.6 2.8E-14 6E-19 153.3 15.7 180 200-416 8-218 (709)
81 PRK08903 DnaA regulatory inact 99.6 9.4E-14 2E-18 132.6 17.8 199 199-449 9-215 (227)
82 PRK05642 DNA replication initi 99.6 6.9E-14 1.5E-18 134.4 16.9 206 199-449 10-224 (234)
83 PRK14951 DNA polymerase III su 99.6 2.9E-14 6.2E-19 153.2 15.7 160 201-397 9-203 (618)
84 PRK05896 DNA polymerase III su 99.6 2.4E-14 5.1E-19 152.3 14.7 156 201-393 9-194 (605)
85 PRK14969 DNA polymerase III su 99.6 3E-14 6.6E-19 151.7 14.5 157 201-394 9-195 (527)
86 PRK07764 DNA polymerase III su 99.6 4.3E-14 9.4E-19 156.6 16.1 158 201-395 8-197 (824)
87 PRK14952 DNA polymerase III su 99.6 4.2E-14 9.1E-19 151.4 15.5 160 201-397 6-197 (584)
88 PRK14970 DNA polymerase III su 99.6 1E-13 2.3E-18 141.8 17.3 160 201-397 10-187 (367)
89 PRK14957 DNA polymerase III su 99.6 7.6E-14 1.6E-18 148.2 16.4 157 201-394 9-195 (546)
90 PRK12402 replication factor C 99.6 1.1E-13 2.4E-18 139.3 17.0 160 193-394 4-201 (337)
91 KOG0736 Peroxisome assembly fa 99.6 5.9E-14 1.3E-18 148.8 15.1 172 238-421 427-607 (953)
92 TIGR02902 spore_lonB ATP-depen 99.5 5.6E-14 1.2E-18 150.0 15.3 171 193-401 54-287 (531)
93 PRK07133 DNA polymerase III su 99.5 6.1E-14 1.3E-18 152.0 15.7 156 201-393 11-193 (725)
94 PRK07940 DNA polymerase III su 99.5 1.9E-13 4E-18 140.5 18.0 155 206-388 3-187 (394)
95 TIGR02640 gas_vesic_GvpN gas v 99.5 9.8E-14 2.1E-18 135.5 14.7 146 215-392 5-200 (262)
96 PRK14959 DNA polymerase III su 99.5 8.5E-14 1.8E-18 148.8 15.0 157 201-394 9-195 (624)
97 PRK14965 DNA polymerase III su 99.5 7.8E-14 1.7E-18 150.2 14.8 157 201-394 9-195 (576)
98 TIGR02639 ClpA ATP-dependent C 99.5 3.3E-14 7.2E-19 157.4 11.6 159 202-391 176-359 (731)
99 PRK06305 DNA polymerase III su 99.5 3.6E-13 7.8E-18 141.0 18.6 156 201-393 10-196 (451)
100 PRK00149 dnaA chromosomal repl 99.5 1.4E-13 3.1E-18 144.5 15.5 192 201-420 115-324 (450)
101 PRK13341 recombination factor 99.5 1.9E-13 4.1E-18 149.8 16.9 192 201-438 21-222 (725)
102 PRK09111 DNA polymerase III su 99.5 1.9E-13 4.2E-18 146.9 16.3 160 201-397 17-211 (598)
103 PRK06620 hypothetical protein; 99.5 6E-13 1.3E-17 126.1 17.5 191 201-449 9-205 (214)
104 TIGR00362 DnaA chromosomal rep 99.5 3.5E-13 7.6E-18 139.7 17.0 191 201-420 103-312 (405)
105 PRK08451 DNA polymerase III su 99.5 4.4E-13 9.6E-18 141.7 17.5 158 201-395 7-194 (535)
106 PRK14955 DNA polymerase III su 99.5 2.1E-13 4.6E-18 140.9 14.7 156 201-393 9-202 (397)
107 PRK14948 DNA polymerase III su 99.5 3.9E-13 8.5E-18 145.4 17.0 156 201-393 9-196 (620)
108 PRK14953 DNA polymerase III su 99.5 4E-13 8.7E-18 141.7 16.5 157 201-394 9-195 (486)
109 PRK06647 DNA polymerase III su 99.5 3.6E-13 7.8E-18 144.2 15.9 157 201-394 9-195 (563)
110 PRK14950 DNA polymerase III su 99.5 4.4E-13 9.6E-18 144.9 16.8 158 201-395 9-197 (585)
111 KOG1969 DNA replication checkp 99.5 1.5E-12 3.1E-17 137.8 20.0 171 193-387 260-478 (877)
112 PRK00440 rfc replication facto 99.5 9.7E-13 2.1E-17 131.4 17.7 162 192-395 5-179 (319)
113 TIGR02928 orc1/cdc6 family rep 99.5 2.9E-12 6.3E-17 130.7 21.1 158 207-391 14-213 (365)
114 PRK10787 DNA-binding ATP-depen 99.5 5.2E-13 1.1E-17 147.9 16.2 160 207-391 320-507 (784)
115 PRK14086 dnaA chromosomal repl 99.5 7.3E-13 1.6E-17 141.1 16.6 192 201-421 281-491 (617)
116 PRK14971 DNA polymerase III su 99.5 7.7E-13 1.7E-17 143.1 17.0 180 201-417 10-221 (614)
117 PRK14954 DNA polymerase III su 99.5 1E-12 2.3E-17 141.6 17.7 157 200-393 8-202 (620)
118 PRK11034 clpA ATP-dependent Cl 99.5 1.5E-12 3.3E-17 143.4 17.3 159 209-391 459-667 (758)
119 TIGR03345 VI_ClpV1 type VI sec 99.5 1.2E-12 2.6E-17 146.5 16.6 158 202-391 181-364 (852)
120 PRK09087 hypothetical protein; 99.4 3.5E-12 7.7E-17 121.9 16.9 192 201-449 14-211 (226)
121 PRK05342 clpX ATP-dependent pr 99.4 1.3E-12 2.9E-17 134.9 15.0 176 207-388 69-323 (412)
122 PRK14088 dnaA chromosomal repl 99.4 1.6E-12 3.6E-17 135.8 15.3 190 201-420 98-307 (440)
123 KOG2028 ATPase related to the 99.4 6.8E-13 1.5E-17 130.6 11.3 195 201-437 131-340 (554)
124 PRK10865 protein disaggregatio 99.4 7.2E-13 1.6E-17 148.6 12.8 158 202-391 172-355 (857)
125 COG2812 DnaX DNA polymerase II 99.4 1.1E-12 2.4E-17 137.4 12.0 161 200-397 8-198 (515)
126 TIGR01650 PD_CobS cobaltochela 99.4 4.4E-12 9.5E-17 126.1 14.8 129 242-390 64-233 (327)
127 PTZ00112 origin recognition co 99.4 7.8E-12 1.7E-16 135.6 17.6 190 208-440 755-988 (1164)
128 PRK11034 clpA ATP-dependent Cl 99.4 9.3E-13 2E-17 145.0 10.8 154 206-390 184-362 (758)
129 PRK14087 dnaA chromosomal repl 99.4 5.9E-12 1.3E-16 131.9 16.2 188 204-420 111-321 (450)
130 PRK00411 cdc6 cell division co 99.4 2.3E-11 5.1E-16 125.4 20.4 157 207-391 29-221 (394)
131 TIGR00382 clpX endopeptidase C 99.4 9.6E-12 2.1E-16 128.0 17.1 176 208-389 77-330 (413)
132 PF00308 Bac_DnaA: Bacterial d 99.4 4.2E-12 9.1E-17 120.8 13.1 183 204-428 4-203 (219)
133 TIGR02639 ClpA ATP-dependent C 99.4 1.5E-11 3.2E-16 136.5 18.6 159 208-391 454-663 (731)
134 cd00009 AAA The AAA+ (ATPases 99.4 7.3E-12 1.6E-16 108.7 12.7 115 242-376 19-151 (151)
135 TIGR03346 chaperone_ClpB ATP-d 99.4 3.2E-12 6.9E-17 143.8 12.8 159 202-392 167-351 (852)
136 TIGR02903 spore_lon_C ATP-depe 99.4 1.3E-11 2.9E-16 133.9 16.9 173 201-407 147-383 (615)
137 CHL00095 clpC Clp protease ATP 99.4 7.3E-12 1.6E-16 140.5 14.7 152 205-389 176-353 (821)
138 PRK07471 DNA polymerase III su 99.4 6E-11 1.3E-15 121.0 19.9 153 201-390 12-213 (365)
139 PRK09112 DNA polymerase III su 99.3 6.6E-11 1.4E-15 120.1 20.1 180 202-419 17-241 (351)
140 PRK12422 chromosomal replicati 99.3 7.8E-12 1.7E-16 130.7 13.0 154 243-417 142-312 (445)
141 PHA02244 ATPase-like protein 99.3 1.7E-11 3.7E-16 123.4 14.0 139 212-382 100-266 (383)
142 PRK05564 DNA polymerase III su 99.3 5.8E-11 1.3E-15 119.0 18.0 148 206-390 2-165 (313)
143 PF07728 AAA_5: AAA domain (dy 99.3 3E-12 6.5E-17 112.6 6.4 105 244-368 1-139 (139)
144 PRK13407 bchI magnesium chelat 99.3 2.2E-11 4.8E-16 122.4 13.2 156 203-391 3-217 (334)
145 TIGR00678 holB DNA polymerase 99.3 4.6E-11 1E-15 110.7 13.7 123 242-389 14-167 (188)
146 COG0714 MoxR-like ATPases [Gen 99.3 1.3E-10 2.8E-15 117.3 17.3 130 242-391 43-204 (329)
147 COG0542 clpA ATP-binding subun 99.3 8.4E-11 1.8E-15 127.8 16.0 160 208-391 491-706 (786)
148 PRK05201 hslU ATP-dependent pr 99.3 1.1E-10 2.4E-15 119.3 15.2 71 208-278 15-86 (443)
149 PRK10865 protein disaggregatio 99.2 1.3E-10 2.9E-15 130.5 16.9 161 207-391 567-780 (857)
150 TIGR03345 VI_ClpV1 type VI sec 99.2 2.8E-10 6.1E-15 127.6 19.5 157 208-391 566-781 (852)
151 TIGR00390 hslU ATP-dependent p 99.2 1.6E-10 3.4E-15 118.0 15.7 70 209-278 13-83 (441)
152 TIGR03346 chaperone_ClpB ATP-d 99.2 2.8E-10 6E-15 128.2 18.7 160 208-391 565-777 (852)
153 CHL00081 chlI Mg-protoporyphyr 99.2 8.5E-11 1.9E-15 118.6 12.6 155 204-391 13-233 (350)
154 TIGR00602 rad24 checkpoint pro 99.2 1.9E-10 4.2E-15 124.1 15.0 208 192-438 72-328 (637)
155 CHL00095 clpC Clp protease ATP 99.2 5.1E-10 1.1E-14 125.7 18.7 160 208-391 509-733 (821)
156 COG1474 CDC6 Cdc6-related prot 99.2 1.4E-09 3E-14 111.0 19.1 154 208-391 17-204 (366)
157 PRK08181 transposase; Validate 99.2 7.4E-11 1.6E-15 115.4 9.4 154 162-355 41-209 (269)
158 PRK08116 hypothetical protein; 99.2 1.5E-10 3.3E-15 113.4 11.5 148 206-379 83-251 (268)
159 PRK07952 DNA replication prote 99.2 8.7E-11 1.9E-15 113.3 9.6 138 201-364 65-219 (244)
160 TIGR02030 BchI-ChlI magnesium 99.2 9.2E-10 2E-14 111.0 16.9 153 206-391 2-220 (337)
161 COG0464 SpoVK ATPases of the A 99.2 2.8E-10 6E-15 121.1 13.8 180 229-419 5-193 (494)
162 PRK05707 DNA polymerase III su 99.2 1.3E-09 2.8E-14 109.7 17.3 123 242-389 22-177 (328)
163 PF03215 Rad17: Rad17 cell cyc 99.1 1.2E-09 2.6E-14 115.9 17.3 211 189-439 4-269 (519)
164 PF07724 AAA_2: AAA domain (Cd 99.1 1.4E-10 3E-15 106.1 8.4 108 242-356 3-131 (171)
165 smart00763 AAA_PrkA PrkA AAA d 99.1 1.4E-09 3E-14 109.5 16.2 63 206-275 48-118 (361)
166 PRK07399 DNA polymerase III su 99.1 1.4E-09 3E-14 108.9 15.9 174 206-419 2-222 (314)
167 PRK08058 DNA polymerase III su 99.1 1.4E-09 3E-14 109.8 15.9 146 206-388 3-180 (329)
168 KOG0991 Replication factor C, 99.1 3.3E-10 7.2E-15 105.9 10.4 190 193-438 16-219 (333)
169 COG0470 HolB ATPase involved i 99.1 1.7E-09 3.7E-14 108.0 16.3 141 209-385 2-176 (325)
170 PRK11331 5-methylcytosine-spec 99.1 7.8E-10 1.7E-14 114.1 13.0 135 207-376 174-357 (459)
171 PRK11608 pspF phage shock prot 99.1 3.9E-09 8.4E-14 106.4 17.8 154 206-391 4-195 (326)
172 PRK12377 putative replication 99.1 3.8E-10 8.3E-15 109.1 9.6 134 205-364 71-220 (248)
173 PF07726 AAA_3: ATPase family 99.1 1.8E-10 3.9E-15 99.2 5.8 106 244-369 1-130 (131)
174 PRK04132 replication factor C 99.1 2.1E-09 4.6E-14 119.0 15.6 122 245-391 567-703 (846)
175 COG0593 DnaA ATPase involved i 99.1 1.8E-09 4E-14 110.3 13.6 173 202-404 81-271 (408)
176 PRK13531 regulatory ATPase Rav 99.1 1.1E-09 2.4E-14 113.9 12.2 128 242-389 39-193 (498)
177 TIGR01817 nifA Nif-specific re 99.0 8.8E-09 1.9E-13 110.7 18.8 156 204-391 192-385 (534)
178 PF00158 Sigma54_activat: Sigm 99.0 2.6E-09 5.7E-14 97.4 12.0 86 210-306 1-106 (168)
179 PRK06526 transposase; Provisio 99.0 3.4E-10 7.3E-15 110.0 6.4 126 162-305 34-171 (254)
180 TIGR02974 phageshock_pspF psp 99.0 1.5E-09 3.3E-14 109.4 10.9 150 210-391 1-188 (329)
181 smart00350 MCM minichromosome 99.0 4.2E-09 9E-14 112.4 14.3 159 209-391 204-401 (509)
182 TIGR02442 Cob-chelat-sub cobal 99.0 1.4E-09 3E-14 118.8 10.8 153 206-391 2-215 (633)
183 PRK11388 DNA-binding transcrip 99.0 1.6E-08 3.4E-13 111.0 19.0 154 206-391 323-511 (638)
184 PRK06964 DNA polymerase III su 99.0 1.8E-08 4E-13 101.7 17.8 124 241-389 20-203 (342)
185 smart00382 AAA ATPases associa 99.0 2.3E-09 5E-14 91.8 9.8 118 242-377 2-147 (148)
186 PRK08939 primosomal protein Dn 99.0 2E-09 4.3E-14 107.4 10.0 97 204-305 123-229 (306)
187 PF13177 DNA_pol3_delta2: DNA 99.0 1.1E-08 2.4E-13 92.8 13.5 111 242-377 19-161 (162)
188 COG1219 ClpX ATP-dependent pro 99.0 2.7E-09 5.8E-14 104.0 9.6 96 242-341 97-206 (408)
189 KOG0741 AAA+-type ATPase [Post 99.0 4.8E-09 1E-13 108.0 11.9 136 242-388 538-684 (744)
190 PRK15424 propionate catabolism 99.0 1E-08 2.2E-13 109.4 14.9 90 205-306 216-335 (538)
191 TIGR02329 propionate_PrpR prop 98.9 2E-08 4.4E-13 107.0 16.6 158 203-392 207-403 (526)
192 PF01078 Mg_chelatase: Magnesi 98.9 3.7E-09 8E-14 98.7 9.2 140 206-380 1-205 (206)
193 PRK10820 DNA-binding transcrip 98.9 3.6E-08 7.8E-13 105.5 17.6 175 204-410 200-419 (520)
194 COG1221 PspF Transcriptional r 98.9 2E-08 4.4E-13 102.5 14.1 202 160-392 21-266 (403)
195 PRK06871 DNA polymerase III su 98.9 7.7E-08 1.7E-12 96.5 17.0 123 242-389 24-178 (325)
196 TIGR02031 BchD-ChlD magnesium 98.9 1.6E-08 3.4E-13 109.5 12.9 128 243-390 17-174 (589)
197 PRK08769 DNA polymerase III su 98.9 8.4E-08 1.8E-12 96.1 17.1 122 242-388 26-183 (319)
198 PRK06090 DNA polymerase III su 98.9 9.1E-08 2E-12 95.8 17.3 122 242-388 25-178 (319)
199 PRK06835 DNA replication prote 98.9 1.1E-08 2.3E-13 103.1 10.6 63 243-305 184-258 (329)
200 PRK15429 formate hydrogenlyase 98.9 1.7E-08 3.7E-13 111.5 13.1 89 205-305 373-482 (686)
201 PF01695 IstB_IS21: IstB-like 98.9 1.3E-09 2.8E-14 100.4 3.3 63 242-304 47-119 (178)
202 PRK07993 DNA polymerase III su 98.8 5.5E-08 1.2E-12 98.3 14.9 122 242-388 24-178 (334)
203 COG3829 RocR Transcriptional r 98.8 2E-08 4.3E-13 104.6 11.9 124 202-355 239-391 (560)
204 COG0542 clpA ATP-binding subun 98.8 1.5E-08 3.3E-13 110.4 11.6 152 206-388 168-344 (786)
205 PRK05022 anaerobic nitric oxid 98.8 1.4E-07 3.1E-12 100.7 18.6 154 206-391 185-376 (509)
206 COG1224 TIP49 DNA helicase TIP 98.8 2.7E-07 5.9E-12 91.4 18.6 64 207-278 38-103 (450)
207 PF14532 Sigma54_activ_2: Sigm 98.8 9.5E-09 2.1E-13 90.5 7.6 126 212-376 2-137 (138)
208 PF12775 AAA_7: P-loop contain 98.8 2.3E-08 4.9E-13 98.3 11.0 134 242-391 33-194 (272)
209 PRK09183 transposase/IS protei 98.8 7.6E-09 1.6E-13 101.0 7.4 64 242-305 102-176 (259)
210 COG1484 DnaC DNA replication p 98.8 2.3E-08 5E-13 97.2 10.4 92 206-305 77-179 (254)
211 PF06068 TIP49: TIP49 C-termin 98.8 8.6E-08 1.9E-12 96.1 14.4 65 207-279 23-89 (398)
212 PRK06921 hypothetical protein; 98.8 2.2E-08 4.8E-13 98.0 8.9 63 242-304 117-188 (266)
213 KOG0745 Putative ATP-dependent 98.8 2.6E-08 5.7E-13 100.6 9.0 131 242-378 226-387 (564)
214 PRK08699 DNA polymerase III su 98.8 4.9E-08 1.1E-12 98.3 11.0 121 242-387 21-182 (325)
215 KOG2035 Replication factor C, 98.7 1.7E-07 3.7E-12 90.1 13.2 163 201-401 6-210 (351)
216 KOG0990 Replication factor C, 98.7 7.8E-08 1.7E-12 94.1 9.6 160 192-393 29-206 (360)
217 PRK10923 glnG nitrogen regulat 98.7 1.7E-07 3.6E-12 99.0 12.9 153 207-391 137-327 (469)
218 PF13173 AAA_14: AAA domain 98.7 1E-07 2.2E-12 82.8 8.8 114 243-382 3-127 (128)
219 PF01637 Arch_ATPase: Archaeal 98.6 4.3E-07 9.3E-12 85.7 12.9 157 242-417 20-233 (234)
220 TIGR03015 pepcterm_ATPase puta 98.6 1.7E-06 3.7E-11 84.3 17.1 172 213-416 24-236 (269)
221 PF12774 AAA_6: Hydrolytic ATP 98.6 4.7E-07 1E-11 86.7 11.5 146 242-405 32-196 (231)
222 KOG1970 Checkpoint RAD17-RFC c 98.6 8.8E-07 1.9E-11 92.1 13.9 210 190-437 68-319 (634)
223 TIGR02915 PEP_resp_reg putativ 98.6 2.7E-06 5.8E-11 89.3 17.9 89 206-306 137-246 (445)
224 PF00910 RNA_helicase: RNA hel 98.6 1.2E-07 2.6E-12 79.8 6.3 61 245-305 1-61 (107)
225 TIGR00368 Mg chelatase-related 98.5 3.1E-07 6.8E-12 97.3 10.4 143 204-381 188-395 (499)
226 COG2204 AtoC Response regulato 98.5 4.7E-07 1E-11 94.2 11.3 154 206-391 139-330 (464)
227 PHA02624 large T antigen; Prov 98.5 5.1E-07 1.1E-11 96.0 11.1 125 238-376 427-561 (647)
228 COG1220 HslU ATP-dependent pro 98.5 1E-06 2.2E-11 86.9 12.3 69 210-278 17-86 (444)
229 COG1239 ChlI Mg-chelatase subu 98.5 6.2E-07 1.3E-11 91.2 11.0 155 204-391 13-233 (423)
230 TIGR01818 ntrC nitrogen regula 98.5 3.8E-06 8.2E-11 88.5 17.5 152 208-391 134-323 (463)
231 PRK11361 acetoacetate metaboli 98.5 7.9E-07 1.7E-11 93.5 12.2 88 207-306 142-250 (457)
232 PRK05818 DNA polymerase III su 98.5 3.6E-06 7.8E-11 81.5 15.3 112 241-377 6-147 (261)
233 PHA00729 NTP-binding motif con 98.5 9.7E-07 2.1E-11 83.8 9.9 180 243-442 18-220 (226)
234 PRK05917 DNA polymerase III su 98.4 7.9E-06 1.7E-10 80.6 16.5 111 242-377 19-154 (290)
235 PRK07132 DNA polymerase III su 98.4 7.7E-06 1.7E-10 81.4 16.2 121 242-388 18-160 (299)
236 KOG1942 DNA helicase, TBP-inte 98.4 5.6E-06 1.2E-10 80.3 14.5 52 208-267 38-89 (456)
237 KOG1968 Replication factor C, 98.4 1.6E-06 3.6E-11 96.5 12.2 175 192-393 308-505 (871)
238 PRK07276 DNA polymerase III su 98.4 1E-05 2.2E-10 80.0 16.4 118 242-387 24-172 (290)
239 PRK09862 putative ATP-dependen 98.4 6.6E-07 1.4E-11 94.7 8.6 119 242-380 210-391 (506)
240 PRK15115 response regulator Gl 98.4 7.3E-06 1.6E-10 85.9 16.3 85 210-306 136-241 (444)
241 PTZ00111 DNA replication licen 98.4 1.7E-06 3.6E-11 96.2 11.6 128 243-390 493-657 (915)
242 PLN03210 Resistant to P. syrin 98.4 5.4E-06 1.2E-10 96.9 16.3 152 201-392 177-366 (1153)
243 PF05729 NACHT: NACHT domain 98.4 2.8E-06 6E-11 75.9 10.7 132 243-391 1-164 (166)
244 KOG1514 Origin recognition com 98.4 1.9E-05 4E-10 84.6 18.0 157 209-393 397-592 (767)
245 KOG2227 Pre-initiation complex 98.3 1.1E-05 2.3E-10 82.9 15.1 159 207-393 149-341 (529)
246 PF05621 TniB: Bacterial TniB 98.3 7.5E-06 1.6E-10 80.6 13.4 149 218-390 43-227 (302)
247 TIGR00764 lon_rel lon-related 98.3 2.3E-05 4.9E-10 85.4 18.3 50 205-269 15-64 (608)
248 PF03969 AFG1_ATPase: AFG1-lik 98.3 9.2E-07 2E-11 90.2 7.0 96 239-355 59-168 (362)
249 KOG0478 DNA replication licens 98.3 4.2E-06 9E-11 89.0 11.9 161 209-391 430-627 (804)
250 PF00931 NB-ARC: NB-ARC domain 98.3 1.4E-05 3E-10 78.5 15.0 146 242-415 19-199 (287)
251 PF13401 AAA_22: AAA domain; P 98.3 8.9E-07 1.9E-11 76.4 5.7 38 242-279 4-49 (131)
252 PRK10365 transcriptional regul 98.3 2.4E-05 5.1E-10 81.9 16.9 86 209-306 140-246 (441)
253 COG0606 Predicted ATPase with 98.3 1.3E-06 2.8E-11 90.1 6.9 48 204-266 175-222 (490)
254 KOG1051 Chaperone HSP104 and r 98.2 6.6E-06 1.4E-10 91.3 11.9 123 208-354 562-710 (898)
255 COG3604 FhlA Transcriptional r 98.2 1.6E-05 3.6E-10 82.2 13.5 89 206-305 221-329 (550)
256 PRK13406 bchD magnesium chelat 98.2 1.8E-05 3.9E-10 85.5 12.7 120 243-382 26-174 (584)
257 PHA02774 E1; Provisional 98.2 1.4E-05 3E-10 84.9 11.4 58 238-302 430-488 (613)
258 KOG2170 ATPase of the AAA+ sup 98.1 6.7E-06 1.5E-10 80.1 7.6 91 208-305 82-190 (344)
259 COG5271 MDN1 AAA ATPase contai 98.1 1.8E-05 3.9E-10 90.6 11.2 127 242-393 1543-1706(4600)
260 TIGR02688 conserved hypothetic 98.1 3.2E-05 7E-10 79.5 11.8 63 242-305 209-272 (449)
261 PF05707 Zot: Zonular occluden 98.0 1.8E-05 4E-10 73.7 8.8 115 245-377 3-146 (193)
262 PF08740 BCS1_N: BCS1 N termin 98.0 0.0004 8.6E-09 64.2 16.9 137 52-210 27-187 (187)
263 PF13207 AAA_17: AAA domain; P 98.0 5.8E-06 1.2E-10 70.5 3.6 31 245-275 2-32 (121)
264 cd01120 RecA-like_NTPases RecA 97.9 7.3E-05 1.6E-09 66.1 10.3 31 245-275 2-35 (165)
265 TIGR02237 recomb_radB DNA repa 97.9 3.1E-05 6.7E-10 72.7 7.6 40 238-277 8-50 (209)
266 PRK15455 PrkA family serine pr 97.9 1.6E-05 3.4E-10 84.5 6.1 66 203-275 71-137 (644)
267 PF00493 MCM: MCM2/3/5 family 97.9 8.5E-06 1.9E-10 82.4 3.9 163 209-392 25-223 (331)
268 PF10443 RNA12: RNA12 protein; 97.9 0.00056 1.2E-08 70.4 16.5 87 348-437 186-298 (431)
269 PRK00131 aroK shikimate kinase 97.8 1.7E-05 3.7E-10 71.7 4.3 34 241-274 3-36 (175)
270 PF14516 AAA_35: AAA-like doma 97.8 0.00047 1E-08 69.8 15.1 133 242-390 31-214 (331)
271 KOG0480 DNA replication licens 97.8 0.0002 4.3E-09 76.1 12.5 163 207-392 344-544 (764)
272 PRK07261 topology modulation p 97.8 4.5E-05 9.8E-10 69.7 6.9 30 245-274 3-32 (171)
273 COG3283 TyrR Transcriptional r 97.8 0.00063 1.4E-08 68.0 15.1 129 199-355 195-344 (511)
274 PF06309 Torsin: Torsin; Inte 97.8 3.8E-05 8.2E-10 66.2 5.7 53 208-266 25-77 (127)
275 TIGR01618 phage_P_loop phage n 97.8 2.7E-05 6E-10 73.9 5.3 62 243-306 13-94 (220)
276 cd01394 radB RadB. The archaea 97.7 0.00014 2.9E-09 68.9 9.1 39 238-276 15-56 (218)
277 PRK12723 flagellar biosynthesi 97.7 0.00042 9.1E-09 71.4 13.1 65 241-305 173-266 (388)
278 PRK14722 flhF flagellar biosyn 97.7 9.2E-05 2E-09 75.7 8.1 100 242-360 137-264 (374)
279 KOG2680 DNA helicase TIP49, TB 97.7 0.0002 4.3E-09 70.0 9.8 65 206-278 38-104 (454)
280 PRK08118 topology modulation p 97.7 2.6E-05 5.7E-10 71.0 3.6 32 244-275 3-34 (167)
281 COG1618 Predicted nucleotide k 97.7 0.00014 3.1E-09 65.0 8.0 24 243-266 6-29 (179)
282 PRK06067 flagellar accessory p 97.7 0.00026 5.6E-09 67.8 10.1 38 238-275 21-61 (234)
283 PRK09361 radB DNA repair and r 97.7 9.1E-05 2E-09 70.4 6.8 39 238-276 19-60 (225)
284 PF06431 Polyoma_lg_T_C: Polyo 97.7 0.00023 5E-09 71.4 9.7 139 216-376 137-285 (417)
285 KOG2228 Origin recognition com 97.6 0.00032 6.9E-09 69.6 10.2 157 208-393 24-222 (408)
286 PRK13947 shikimate kinase; Pro 97.6 4.8E-05 1E-09 69.0 4.1 32 244-275 3-34 (171)
287 COG1241 MCM2 Predicted ATPase 97.6 0.00011 2.4E-09 79.9 7.5 161 208-390 286-483 (682)
288 PRK00771 signal recognition pa 97.6 0.0011 2.4E-08 69.4 14.4 63 215-278 69-134 (437)
289 cd01124 KaiC KaiC is a circadi 97.6 0.00034 7.4E-09 64.0 9.6 31 245-275 2-35 (187)
290 PRK03839 putative kinase; Prov 97.6 4.9E-05 1.1E-09 69.8 3.8 30 245-274 3-32 (180)
291 PRK00625 shikimate kinase; Pro 97.6 5.4E-05 1.2E-09 69.4 3.9 31 244-274 2-32 (173)
292 cd00464 SK Shikimate kinase (S 97.6 5.4E-05 1.2E-09 67.1 3.9 31 244-274 1-31 (154)
293 COG0703 AroK Shikimate kinase 97.6 4.7E-05 1E-09 69.2 3.3 32 243-274 3-34 (172)
294 PF13191 AAA_16: AAA ATPase do 97.6 4.4E-05 9.5E-10 69.6 3.1 59 210-278 2-63 (185)
295 PF13671 AAA_33: AAA domain; P 97.6 3.6E-05 7.8E-10 67.4 2.4 28 245-272 2-29 (143)
296 COG1485 Predicted ATPase [Gene 97.6 0.00019 4.2E-09 71.7 7.7 95 240-355 63-171 (367)
297 COG5245 DYN1 Dynein, heavy cha 97.6 0.00037 8E-09 79.7 10.4 139 240-391 1492-1659(3164)
298 PRK13949 shikimate kinase; Pro 97.6 6.4E-05 1.4E-09 68.6 3.8 32 243-274 2-33 (169)
299 COG1373 Predicted ATPase (AAA+ 97.6 0.00084 1.8E-08 69.7 12.5 116 244-384 39-161 (398)
300 cd01393 recA_like RecA is a b 97.5 0.00023 5.1E-09 67.5 7.3 40 238-277 15-63 (226)
301 cd03283 ABC_MutS-like MutS-lik 97.5 0.0004 8.7E-09 65.1 8.7 63 242-304 25-116 (199)
302 PRK08533 flagellar accessory p 97.5 0.00074 1.6E-08 64.8 10.6 37 238-274 20-59 (230)
303 PF13604 AAA_30: AAA domain; P 97.5 0.0004 8.6E-09 64.9 8.4 63 243-305 19-105 (196)
304 PRK08154 anaerobic benzoate ca 97.5 0.00016 3.5E-09 72.5 6.2 58 212-274 108-165 (309)
305 TIGR03499 FlhF flagellar biosy 97.5 0.00053 1.2E-08 67.8 9.6 61 242-302 194-281 (282)
306 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00043 9.4E-09 65.6 8.6 103 243-361 30-160 (213)
307 PRK06581 DNA polymerase III su 97.5 0.0018 3.9E-08 62.1 12.4 125 242-391 15-162 (263)
308 TIGR02012 tigrfam_recA protein 97.5 0.00044 9.6E-09 69.4 8.7 70 238-307 51-147 (321)
309 PRK13948 shikimate kinase; Pro 97.5 0.00013 2.8E-09 67.5 4.5 34 241-274 9-42 (182)
310 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00031 6.6E-09 67.1 7.3 40 238-277 15-63 (235)
311 PRK05973 replicative DNA helic 97.4 0.00091 2E-08 64.3 10.2 37 238-274 60-99 (237)
312 PRK14737 gmk guanylate kinase; 97.4 0.00035 7.6E-09 64.8 7.1 35 242-276 4-38 (186)
313 PRK04841 transcriptional regul 97.4 0.0061 1.3E-07 69.5 18.5 151 242-419 32-226 (903)
314 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00012 2.7E-09 67.0 3.9 29 245-273 2-30 (183)
315 PTZ00202 tuzin; Provisional 97.4 0.0066 1.4E-07 63.0 16.5 75 204-290 258-332 (550)
316 PRK06217 hypothetical protein; 97.4 0.00013 2.9E-09 67.2 4.0 31 244-274 3-33 (183)
317 cd02021 GntK Gluconate kinase 97.4 0.00013 2.8E-09 64.7 3.8 28 245-272 2-29 (150)
318 PF00437 T2SE: Type II/IV secr 97.4 0.00029 6.3E-09 68.9 6.6 90 203-303 99-207 (270)
319 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.3E-09 66.8 4.3 31 243-273 3-33 (183)
320 PRK14532 adenylate kinase; Pro 97.4 0.00014 3.1E-09 67.1 4.0 30 244-273 2-31 (188)
321 KOG3347 Predicted nucleotide k 97.4 0.00013 2.9E-09 64.3 3.4 32 242-273 7-38 (176)
322 cd00983 recA RecA is a bacter 97.4 0.00062 1.3E-08 68.4 8.6 70 238-307 51-147 (325)
323 TIGR01313 therm_gnt_kin carboh 97.4 0.00014 3.1E-09 65.4 3.7 28 245-272 1-28 (163)
324 cd02020 CMPK Cytidine monophos 97.4 0.00015 3.3E-09 63.6 3.7 30 245-274 2-31 (147)
325 PF05272 VirE: Virulence-assoc 97.4 0.00035 7.6E-09 65.4 6.2 113 238-376 48-169 (198)
326 PF12780 AAA_8: P-loop contain 97.4 0.0043 9.4E-08 60.9 14.1 86 208-304 8-100 (268)
327 PRK13946 shikimate kinase; Pro 97.4 0.00016 3.5E-09 66.8 3.7 34 242-275 10-43 (184)
328 PRK05057 aroK shikimate kinase 97.3 0.0002 4.3E-09 65.5 4.2 34 242-275 4-37 (172)
329 cd01428 ADK Adenylate kinase ( 97.3 0.00018 4E-09 66.3 3.9 29 245-273 2-30 (194)
330 PRK05800 cobU adenosylcobinami 97.3 0.00038 8.2E-09 63.7 5.8 63 244-306 3-89 (170)
331 PF13086 AAA_11: AAA domain; P 97.3 0.0002 4.4E-09 67.3 4.0 22 245-266 20-41 (236)
332 cd00544 CobU Adenosylcobinamid 97.3 0.001 2.2E-08 60.8 8.3 63 245-307 2-87 (169)
333 PRK11823 DNA repair protein Ra 97.3 0.00089 1.9E-08 70.5 8.9 70 238-307 76-170 (446)
334 PRK05703 flhF flagellar biosyn 97.3 0.0041 8.8E-08 65.1 13.7 62 242-303 221-309 (424)
335 PRK03731 aroL shikimate kinase 97.3 0.00025 5.5E-09 64.3 4.2 32 243-274 3-34 (171)
336 PRK14530 adenylate kinase; Pro 97.3 0.00027 6E-09 66.8 4.3 31 243-273 4-34 (215)
337 PRK04296 thymidine kinase; Pro 97.2 0.002 4.4E-08 59.8 9.9 31 243-273 3-36 (190)
338 PRK11889 flhF flagellar biosyn 97.2 0.0035 7.7E-08 64.4 12.3 60 214-277 217-279 (436)
339 cd01121 Sms Sms (bacterial rad 97.2 0.002 4.4E-08 66.1 10.7 69 238-306 78-171 (372)
340 COG4650 RtcR Sigma54-dependent 97.2 0.00095 2E-08 65.2 7.6 65 242-306 208-295 (531)
341 PRK06762 hypothetical protein; 97.2 0.00036 7.8E-09 63.0 4.6 33 242-274 2-34 (166)
342 TIGR00150 HI0065_YjeE ATPase, 97.2 0.002 4.2E-08 56.5 8.8 28 242-269 22-49 (133)
343 COG1102 Cmk Cytidylate kinase 97.2 0.00028 6.1E-09 63.2 3.5 28 245-272 3-30 (179)
344 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.00073 1.6E-08 68.0 6.8 65 207-278 59-125 (358)
345 cd00227 CPT Chloramphenicol (C 97.2 0.00026 5.7E-09 64.7 3.4 33 243-275 3-35 (175)
346 cd03243 ABC_MutS_homologs The 97.2 0.0012 2.5E-08 61.9 7.8 63 243-305 30-120 (202)
347 PLN02199 shikimate kinase 97.2 0.00074 1.6E-08 66.7 6.4 33 242-274 102-134 (303)
348 PF06745 KaiC: KaiC; InterPro 97.2 0.0015 3.3E-08 62.0 8.5 40 238-277 15-58 (226)
349 PRK06547 hypothetical protein; 97.2 0.00055 1.2E-08 62.7 5.1 33 242-274 15-47 (172)
350 PRK08233 hypothetical protein; 97.2 0.0021 4.6E-08 58.5 9.0 33 243-275 4-37 (182)
351 PRK13765 ATP-dependent proteas 97.2 0.00069 1.5E-08 74.0 6.6 51 202-267 25-75 (637)
352 cd01128 rho_factor Transcripti 97.2 0.003 6.4E-08 61.4 10.3 27 242-268 16-42 (249)
353 PRK14528 adenylate kinase; Pro 97.1 0.0004 8.7E-09 64.3 4.0 30 244-273 3-32 (186)
354 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 8.8E-09 63.6 3.9 31 243-273 4-34 (188)
355 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0014 2.9E-08 58.7 7.1 26 242-267 25-50 (157)
356 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0012 2.6E-08 64.5 7.3 39 238-276 32-73 (259)
357 PRK02496 adk adenylate kinase; 97.1 0.00039 8.5E-09 63.9 3.6 29 245-273 4-32 (184)
358 PF13245 AAA_19: Part of AAA d 97.1 0.00074 1.6E-08 53.3 4.7 33 244-276 12-51 (76)
359 TIGR02238 recomb_DMC1 meiotic 97.1 0.0014 3.1E-08 65.7 7.9 27 238-264 92-118 (313)
360 TIGR01069 mutS2 MutS2 family p 97.1 0.0032 7E-08 70.5 11.4 23 243-265 323-345 (771)
361 PRK09376 rho transcription ter 97.1 0.0023 5E-08 65.6 9.1 23 245-267 172-194 (416)
362 PTZ00088 adenylate kinase 1; P 97.1 0.00045 9.8E-09 66.2 3.9 31 244-274 8-38 (229)
363 COG1855 ATPase (PilT family) [ 97.1 0.00058 1.3E-08 70.1 4.6 100 145-268 169-289 (604)
364 PRK09354 recA recombinase A; P 97.1 0.002 4.3E-08 65.3 8.5 70 238-307 56-152 (349)
365 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0021 4.5E-08 61.4 8.2 98 242-357 31-156 (222)
366 PLN02200 adenylate kinase fami 97.1 0.00061 1.3E-08 65.5 4.6 30 242-271 43-72 (234)
367 TIGR01351 adk adenylate kinase 97.1 0.00047 1E-08 65.0 3.7 29 245-273 2-30 (210)
368 COG1936 Predicted nucleotide k 97.1 0.0004 8.7E-09 62.9 2.9 30 244-274 2-31 (180)
369 PF04665 Pox_A32: Poxvirus A32 97.1 0.016 3.6E-07 55.7 14.2 126 242-392 13-172 (241)
370 PRK00279 adk adenylate kinase; 97.0 0.00053 1.1E-08 64.9 3.9 29 245-273 3-31 (215)
371 KOG1051 Chaperone HSP104 and r 97.0 0.0037 7.9E-08 70.0 10.8 143 207-381 185-354 (898)
372 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0044 9.5E-08 59.6 10.2 47 238-286 17-66 (237)
373 cd03216 ABC_Carb_Monos_I This 97.0 0.0014 3.1E-08 59.2 6.4 25 242-266 26-50 (163)
374 PRK10867 signal recognition pa 97.0 0.02 4.3E-07 60.0 15.5 63 216-279 74-141 (433)
375 cd02019 NK Nucleoside/nucleoti 97.0 0.00097 2.1E-08 51.4 4.4 22 245-266 2-23 (69)
376 TIGR02858 spore_III_AA stage I 97.0 0.0022 4.8E-08 63.0 7.9 25 243-267 112-136 (270)
377 COG5271 MDN1 AAA ATPase contai 97.0 0.0081 1.8E-07 70.1 13.0 130 243-390 889-1047(4600)
378 PF13238 AAA_18: AAA domain; P 97.0 0.00046 9.9E-09 58.8 2.6 22 245-266 1-22 (129)
379 smart00072 GuKc Guanylate kina 97.0 0.0022 4.9E-08 59.1 7.3 25 242-266 2-26 (184)
380 PRK04328 hypothetical protein; 97.0 0.0054 1.2E-07 59.5 10.3 48 238-287 19-69 (249)
381 PRK04182 cytidylate kinase; Pr 97.0 0.00067 1.5E-08 61.6 3.7 30 244-273 2-31 (180)
382 PLN03187 meiotic recombination 97.0 0.0026 5.7E-08 64.5 8.3 27 238-264 122-148 (344)
383 PRK06696 uridine kinase; Valid 97.0 0.0021 4.6E-08 61.1 7.3 39 242-280 22-63 (223)
384 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0024 5.2E-08 62.6 7.8 86 204-303 56-159 (264)
385 smart00534 MUTSac ATPase domai 97.0 0.0023 4.9E-08 59.2 7.2 61 245-305 2-90 (185)
386 PTZ00035 Rad51 protein; Provis 97.0 0.0024 5.1E-08 64.8 7.9 28 238-265 114-141 (337)
387 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0016 3.6E-08 60.8 6.3 21 243-263 29-49 (200)
388 PF07693 KAP_NTPase: KAP famil 96.9 0.011 2.3E-07 59.2 12.6 29 241-269 19-47 (325)
389 PRK14527 adenylate kinase; Pro 96.9 0.00065 1.4E-08 63.0 3.4 32 242-273 6-37 (191)
390 PF01745 IPT: Isopentenyl tran 96.9 0.00082 1.8E-08 63.0 3.9 35 244-278 3-37 (233)
391 PF13521 AAA_28: AAA domain; P 96.9 0.00066 1.4E-08 61.1 3.2 26 245-271 2-27 (163)
392 PRK04040 adenylate kinase; Pro 96.9 0.00088 1.9E-08 62.3 4.1 29 243-271 3-33 (188)
393 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0029 6.4E-08 60.0 7.7 61 243-303 31-119 (216)
394 PF02367 UPF0079: Uncharacteri 96.9 0.0025 5.4E-08 55.0 6.5 64 242-305 15-100 (123)
395 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0021 4.5E-08 60.5 6.5 62 243-304 30-119 (204)
396 PRK01184 hypothetical protein; 96.9 0.00082 1.8E-08 61.8 3.7 29 244-273 3-31 (184)
397 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0021 4.6E-08 56.9 6.2 62 242-306 26-101 (144)
398 PRK13833 conjugal transfer pro 96.9 0.0023 5E-08 64.4 7.1 62 242-303 144-225 (323)
399 PHA00350 putative assembly pro 96.9 0.0027 5.8E-08 65.4 7.7 121 244-371 3-159 (399)
400 TIGR00416 sms DNA repair prote 96.9 0.0034 7.4E-08 66.2 8.6 69 238-306 90-183 (454)
401 PHA02530 pseT polynucleotide k 96.9 0.00095 2.1E-08 66.2 4.2 31 243-273 3-34 (300)
402 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00091 2E-08 60.3 3.8 29 245-273 3-31 (171)
403 COG0563 Adk Adenylate kinase a 96.9 0.00092 2E-08 61.6 3.8 27 244-270 2-28 (178)
404 PF00406 ADK: Adenylate kinase 96.9 0.00067 1.4E-08 60.4 2.7 27 247-273 1-27 (151)
405 PF00519 PPV_E1_C: Papillomavi 96.9 0.0019 4.2E-08 65.6 6.1 114 238-378 258-384 (432)
406 TIGR00767 rho transcription te 96.9 0.003 6.5E-08 65.0 7.6 25 243-267 169-193 (415)
407 PRK12724 flagellar biosynthesi 96.9 0.019 4.1E-07 59.6 13.5 64 215-278 195-263 (432)
408 PRK00409 recombination and DNA 96.9 0.0057 1.2E-07 68.7 10.6 63 242-304 327-418 (782)
409 TIGR02782 TrbB_P P-type conjug 96.8 0.0014 3E-08 65.4 4.9 25 242-266 132-156 (299)
410 COG2874 FlaH Predicted ATPases 96.8 0.004 8.7E-08 58.4 7.6 121 238-376 24-190 (235)
411 TIGR01448 recD_rel helicase, p 96.8 0.0087 1.9E-07 66.8 11.7 63 243-305 339-428 (720)
412 KOG0482 DNA replication licens 96.8 0.0022 4.8E-08 66.7 6.2 164 209-392 343-541 (721)
413 PRK10078 ribose 1,5-bisphospho 96.8 0.0011 2.5E-08 61.1 3.9 30 243-272 3-32 (186)
414 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0041 8.8E-08 57.2 7.5 25 242-266 25-49 (177)
415 KOG2383 Predicted ATPase [Gene 96.8 0.0035 7.6E-08 63.7 7.5 26 241-266 113-138 (467)
416 TIGR01613 primase_Cterm phage/ 96.8 0.0074 1.6E-07 60.3 9.8 83 212-304 53-139 (304)
417 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.6E-08 62.5 3.8 28 245-272 3-30 (211)
418 PRK12608 transcription termina 96.8 0.0071 1.5E-07 61.8 9.6 24 244-267 135-158 (380)
419 COG0467 RAD55 RecA-superfamily 96.8 0.0027 5.8E-08 61.9 6.2 49 238-288 19-70 (260)
420 PF10236 DAP3: Mitochondrial r 96.8 0.031 6.8E-07 56.0 14.0 98 293-392 156-279 (309)
421 cd02027 APSK Adenosine 5'-phos 96.7 0.0016 3.5E-08 58.0 4.2 30 245-274 2-34 (149)
422 PF08433 KTI12: Chromatin asso 96.7 0.0017 3.7E-08 63.8 4.6 61 245-305 4-82 (270)
423 TIGR02655 circ_KaiC circadian 96.7 0.0081 1.8E-07 64.0 9.9 51 238-290 17-71 (484)
424 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0036 7.7E-08 63.0 6.8 27 238-264 92-118 (316)
425 PF13479 AAA_24: AAA domain 96.7 0.0009 2E-08 63.3 2.2 60 243-305 4-80 (213)
426 PLN03186 DNA repair protein RA 96.7 0.0038 8.3E-08 63.4 6.8 28 238-265 119-146 (342)
427 COG2804 PulE Type II secretory 96.7 0.0061 1.3E-07 64.0 8.3 83 204-303 234-337 (500)
428 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0017 3.8E-08 62.8 4.1 31 245-275 2-35 (249)
429 PRK12727 flagellar biosynthesi 96.7 0.011 2.4E-07 62.9 10.3 64 241-304 349-439 (559)
430 PRK12339 2-phosphoglycerate ki 96.6 0.0023 4.9E-08 60.0 4.5 29 242-270 3-31 (197)
431 PRK14021 bifunctional shikimat 96.6 0.0019 4.2E-08 69.6 4.4 32 244-275 8-39 (542)
432 KOG2543 Origin recognition com 96.6 0.014 2.9E-07 59.2 10.0 128 242-389 30-192 (438)
433 KOG0477 DNA replication licens 96.6 0.003 6.6E-08 67.2 5.4 63 244-306 484-559 (854)
434 COG3284 AcoR Transcriptional a 96.6 0.017 3.6E-07 62.0 11.0 131 241-393 335-502 (606)
435 cd03227 ABC_Class2 ABC-type Cl 96.6 0.007 1.5E-07 54.6 7.2 24 243-266 22-45 (162)
436 PRK00889 adenylylsulfate kinas 96.6 0.003 6.6E-08 57.5 4.8 34 242-275 4-40 (175)
437 PLN02674 adenylate kinase 96.6 0.0023 5E-08 61.8 4.1 31 243-273 32-62 (244)
438 cd01130 VirB11-like_ATPase Typ 96.6 0.0021 4.5E-08 59.5 3.7 26 242-267 25-50 (186)
439 PRK10646 ADP-binding protein; 96.5 0.015 3.2E-07 52.2 8.9 26 243-268 29-54 (153)
440 cd02022 DPCK Dephospho-coenzym 96.5 0.0023 5E-08 58.8 3.9 29 245-274 2-30 (179)
441 COG3267 ExeA Type II secretory 96.5 0.088 1.9E-06 50.8 14.5 160 242-420 50-247 (269)
442 TIGR02236 recomb_radA DNA repa 96.5 0.005 1.1E-07 61.6 6.6 40 238-277 91-139 (310)
443 TIGR00959 ffh signal recogniti 96.5 0.19 4E-06 52.7 18.3 63 216-279 73-140 (428)
444 KOG3354 Gluconate kinase [Carb 96.5 0.002 4.4E-08 57.3 3.2 49 240-290 10-58 (191)
445 PLN02165 adenylate isopentenyl 96.5 0.0024 5.1E-08 64.3 4.0 34 243-276 44-77 (334)
446 COG3854 SpoIIIAA ncharacterize 96.5 0.0065 1.4E-07 57.7 6.5 24 243-266 138-161 (308)
447 PF00488 MutS_V: MutS domain V 96.5 0.012 2.6E-07 56.6 8.6 96 243-356 44-167 (235)
448 PF09848 DUF2075: Uncharacteri 96.5 0.004 8.8E-08 63.5 5.7 24 243-266 2-25 (352)
449 PRK14529 adenylate kinase; Pro 96.5 0.002 4.4E-08 61.4 3.1 28 245-272 3-30 (223)
450 PF05970 PIF1: PIF1-like helic 96.5 0.0099 2.1E-07 61.0 8.4 27 242-268 22-48 (364)
451 COG1119 ModF ABC-type molybden 96.5 0.026 5.7E-07 54.1 10.5 25 242-266 57-81 (257)
452 PRK10436 hypothetical protein; 96.4 0.017 3.7E-07 61.0 10.2 86 204-303 194-297 (462)
453 TIGR02655 circ_KaiC circadian 96.4 0.0059 1.3E-07 65.0 6.8 37 238-274 259-298 (484)
454 PRK09825 idnK D-gluconate kina 96.4 0.0057 1.2E-07 56.2 5.8 35 243-279 4-38 (176)
455 PRK12338 hypothetical protein; 96.4 0.0028 6.1E-08 63.4 4.0 29 242-270 4-32 (319)
456 TIGR02322 phosphon_PhnN phosph 96.4 0.0025 5.5E-08 58.1 3.5 25 244-268 3-27 (179)
457 PF01583 APS_kinase: Adenylyls 96.4 0.0025 5.4E-08 57.3 3.3 36 243-278 3-41 (156)
458 TIGR00064 ftsY signal recognit 96.4 0.0091 2E-07 58.8 7.6 62 216-278 46-111 (272)
459 smart00487 DEXDc DEAD-like hel 96.4 0.0071 1.5E-07 54.5 6.4 24 243-266 25-49 (201)
460 PRK10416 signal recognition pa 96.4 0.0075 1.6E-07 60.7 7.0 62 215-277 87-152 (318)
461 PRK13764 ATPase; Provisional 96.4 0.0033 7.2E-08 68.1 4.7 26 242-267 257-282 (602)
462 cd03286 ABC_MSH6_euk MutS6 hom 96.4 0.011 2.5E-07 56.1 7.9 63 242-304 30-120 (218)
463 TIGR01420 pilT_fam pilus retra 96.4 0.0082 1.8E-07 61.1 7.3 61 243-303 123-205 (343)
464 PF03266 NTPase_1: NTPase; In 96.4 0.0027 5.8E-08 58.0 3.4 23 244-266 1-23 (168)
465 PRK11174 cysteine/glutathione 96.4 0.0064 1.4E-07 66.2 6.9 27 240-266 374-400 (588)
466 PRK05541 adenylylsulfate kinas 96.4 0.003 6.5E-08 57.6 3.6 26 242-267 7-32 (176)
467 PLN02459 probable adenylate ki 96.4 0.0038 8.3E-08 60.8 4.5 30 244-273 31-60 (261)
468 cd01853 Toc34_like Toc34-like 96.4 0.044 9.5E-07 53.2 11.9 25 242-266 31-55 (249)
469 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.026 5.6E-07 51.0 9.5 30 244-273 4-36 (159)
470 PF01443 Viral_helicase1: Vira 96.4 0.0029 6.3E-08 60.0 3.7 22 245-266 1-22 (234)
471 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0032 6.8E-08 58.9 3.7 38 242-279 15-53 (199)
472 PRK12726 flagellar biosynthesi 96.4 0.021 4.5E-07 58.6 9.7 37 242-278 206-245 (407)
473 PRK11176 lipid transporter ATP 96.3 0.0072 1.6E-07 65.7 6.8 26 241-266 368-393 (582)
474 PF08423 Rad51: Rad51; InterP 96.3 0.0091 2E-07 58.2 6.8 98 238-340 34-175 (256)
475 PRK05480 uridine/cytidine kina 96.3 0.0052 1.1E-07 57.7 4.9 35 243-277 7-42 (209)
476 PRK13900 type IV secretion sys 96.3 0.0071 1.5E-07 61.2 6.2 26 242-267 160-185 (332)
477 KOG1808 AAA ATPase containing 96.3 0.029 6.4E-07 67.0 12.0 92 203-305 411-519 (1856)
478 PF03029 ATP_bind_1: Conserved 96.3 0.0029 6.2E-08 61.0 3.2 31 247-277 1-34 (238)
479 COG0529 CysC Adenylylsulfate k 96.3 0.0061 1.3E-07 55.5 5.0 36 243-278 24-62 (197)
480 cd00984 DnaB_C DnaB helicase C 96.3 0.0051 1.1E-07 58.9 4.9 39 238-276 9-51 (242)
481 PRK04301 radA DNA repair and r 96.3 0.0078 1.7E-07 60.5 6.4 40 238-277 98-146 (317)
482 KOG0481 DNA replication licens 96.3 0.013 2.8E-07 61.3 7.9 133 243-392 365-530 (729)
483 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0058 1.3E-07 58.1 5.2 38 238-275 16-56 (229)
484 PRK13808 adenylate kinase; Pro 96.3 0.0034 7.3E-08 63.3 3.7 29 245-273 3-31 (333)
485 PRK14730 coaE dephospho-CoA ki 96.3 0.0037 8E-08 58.4 3.8 31 244-274 3-33 (195)
486 cd03115 SRP The signal recogni 96.3 0.005 1.1E-07 55.9 4.5 36 244-279 2-40 (173)
487 TIGR02768 TraA_Ti Ti-type conj 96.3 0.014 3.1E-07 65.3 8.9 63 243-305 369-451 (744)
488 PRK00300 gmk guanylate kinase; 96.3 0.0044 9.4E-08 57.8 4.2 26 242-267 5-30 (205)
489 cd04177 RSR1 RSR1 subgroup. R 96.3 0.019 4.2E-07 51.4 8.3 23 244-266 3-25 (168)
490 COG1419 FlhF Flagellar GTP-bin 96.3 0.025 5.3E-07 58.1 9.7 93 242-353 203-322 (407)
491 PRK11545 gntK gluconate kinase 96.3 0.0033 7.2E-08 56.9 3.2 27 248-274 1-27 (163)
492 PF00448 SRP54: SRP54-type pro 96.3 0.0039 8.5E-08 58.3 3.7 35 242-276 1-38 (196)
493 PRK09519 recA DNA recombinatio 96.3 0.015 3.3E-07 64.7 8.8 70 238-307 56-152 (790)
494 PRK00091 miaA tRNA delta(2)-is 96.3 0.0048 1E-07 61.7 4.5 33 243-275 5-37 (307)
495 cd02028 UMPK_like Uridine mono 96.3 0.0046 1E-07 56.9 4.1 34 245-278 2-38 (179)
496 PF13555 AAA_29: P-loop contai 96.2 0.0037 8E-08 47.2 2.8 23 244-266 25-47 (62)
497 TIGR02533 type_II_gspE general 96.2 0.013 2.8E-07 62.4 8.0 85 204-303 218-321 (486)
498 cd02024 NRK1 Nicotinamide ribo 96.2 0.0042 9.1E-08 57.7 3.7 29 245-273 2-31 (187)
499 cd04159 Arl10_like Arl10-like 96.2 0.0091 2E-07 52.0 5.7 21 245-265 2-22 (159)
500 TIGR03263 guanyl_kin guanylate 96.2 0.0035 7.6E-08 57.2 3.0 26 243-268 2-27 (180)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-99 Score=755.47 Aligned_cols=428 Identities=50% Similarity=0.806 Sum_probs=402.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhHhhccCCCceEEEEeccCCCCcchHHHHHHHHhcccCCccccc
Q 013083 6 SVLSTAASLAASAMLIRSICNELLPTDIQDYIYSSLHSLSYHISSQITIVIEEFQGLSINEVFDAANVYLGSMATTSSAQ 85 (450)
Q Consensus 6 ~~~~~~~S~~a~~m~~~s~~~~~~P~~l~~~~~~~~~~~~~~~~~~~ti~i~e~~~~~~n~~y~a~~~Yl~~~~~~~~~~ 85 (450)
++|+.+||.+|++|++|+|+++++|.+++.|+.+++++|++.+++|.++.|.|++|+.+|++|.|+|.||++++++.+ +
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~-~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIA-K 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhh-h
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred ceeeeeccCcCceEEEccCCCeEeeccCCeeeEEEEEEeecccccccchhhcccccccCCcceEEEEEEcCcchhHHHHH
Q 013083 86 RFQVMKSEKEKRIGTTLNRNEEIVDVFGDLKLKWKFVCKQVQATKNRNLLQQDNNARLRSEVRHYELSFHRKQKDVVLNL 165 (450)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~ 165 (450)
|++...+.+++++++.+++|++|.|+|+||+++|.+++..++..... ....+.|+|+|+|+++||+.|+.+
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~---------~~~~~~r~~~L~f~k~~~e~V~~s 151 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV---------EREREKRYFELTFHKKPRELVTLS 151 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc---------ccCCcceEEEEEecCccHHHhHHh
Confidence 99999999999999999999999999999999999998876655322 345688999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCceeEEEecC---------CCcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhh
Q 013083 166 YLPHVLEKAKAIKEENHMVKLHTVE---------YGCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTR 236 (450)
Q Consensus 166 yl~~vl~~~~~~~~~~r~~~l~~~~---------~~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~ 236 (450)
||+++.+++++|..+++.+++|+++ ++.|.+ +.+.||++|++|+|+++.|++|++|+..|+++++||++
T Consensus 152 yl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~--v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Ykr 229 (457)
T KOG0743|consen 152 YLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRS--VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKR 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCccee--cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHh
Confidence 9999999999999999999999886 468999 99999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccc
Q 013083 237 VGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQ 316 (450)
Q Consensus 237 ~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~ 316 (450)
+|+||+|||||||||||||||+++|||+++++++|+++++++..+.+|++++..++++||||||||||.+.++.+.....
T Consensus 230 vGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743|consen 230 VGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred cCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777766543
Q ss_pred cCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC-C
Q 013083 317 AGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH-H 395 (450)
Q Consensus 317 ~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~-~ 395 (450)
.........+++++|||++||+||+||++|||||||||+++|||||+||||||+||+|++|++++++.|+++||+.++ |
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h 389 (457)
T KOG0743|consen 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH 389 (457)
T ss_pred ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc
Confidence 333334577999999999999999999999999999999999999999999999999999999999999999999985 9
Q ss_pred CcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh
Q 013083 396 HLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEISLQGIVKFLHAKMNEQH 446 (450)
Q Consensus 396 ~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~al~~l~~~l~~~~~~~~ 446 (450)
+++++|++++.+..+|||||++.||+++. +++.|++.|+++|++++.+.+
T Consensus 390 ~L~~eie~l~~~~~~tPA~V~e~lm~~~~-dad~~lk~Lv~~l~~~~~~~~ 439 (457)
T KOG0743|consen 390 RLFDEIERLIEETEVTPAQVAEELMKNKN-DADVALKGLVEALESKKEKRN 439 (457)
T ss_pred chhHHHHHHhhcCccCHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999543 899999999999999887543
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-39 Score=311.33 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=182.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc--
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV-- 278 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~-- 278 (450)
..+-.+++++.|.++++++|.+.++.++.+|+.|..+|+.+|+|+|||||||||||.||+|+|++.++.|+.+..+++
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 344568999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 279 ----QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 279 ----~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....-++++|.-+. .||||||||||+++. .|-+.. .+.+.+-++|+-+||++|||+.+ .+++-||++|
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~~--t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~AT 297 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDSG--TSGDREVQRTMLELLNQLDGFDP--RGNVKVIMAT 297 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccCC--CCchHHHHHHHHHHHHhccCCCC--CCCeEEEEec
Confidence 24455677877664 799999999999976 332222 22345678999999999999976 5889999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+++.|||||+||||||++|+||.|+.+.|.+|++-+...-...-.-.++.++... ++|.||+...+.
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999888755433334455555443 799999977764
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=308.05 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=187.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc---
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV--- 278 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~--- 278 (450)
....+|+++.|.+++|+++.+.+..++++++.|.+.|+.+++|||||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ---CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 279 ---QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 279 ---~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
.++..++++|.++. .|||||+||||.+.. .|++. ..+...+.+++||++|||+.. ..+++||++||
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~--~R~g~-----~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATN 578 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAG--SRGGS-----SSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATN 578 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh--ccCCC-----ccchHHHHHHHHHHHcccccc--cCcEEEEeccC
Confidence 46889999999986 699999999999975 33321 125677899999999999976 47899999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+|+.||+||+||||||.+|++|.|+.+.|.+|++.++......-.-.++++++.+ ++|.||+.+.+..
T Consensus 579 Rpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 579 RPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred ChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999876555456677887765 8999999887764
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-35 Score=297.12 Aligned_cols=207 Identities=28% Similarity=0.372 Sum_probs=177.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ---- 279 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~---- 279 (450)
..+|+++-|-++.|+++-+.+ .|++.|..|.++|-..++|+||.||||||||.||+|+|.+.+.||+....+++.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 347999999999999987755 799999999999999999999999999999999999999999999999999883
Q ss_pred --CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 280 --SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 280 --~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
....++.+|..+. .||||||||||++.. +|...+ ....+.++++||.+|||+.. .+++|||++||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~--kR~~~~-----~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfp 449 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGG--KRNPSD-----QHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFP 449 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcc--cCCccH-----HHHHHHHHHHHHHHhcCcCc--CCceEEEeccCCh
Confidence 4688999998875 799999999999976 232222 22567899999999999976 5789999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+.||+||.||||||+||.+|.||...|.+|++.|+..-.+.-.-+..-+++.+ +++.||+++.+-
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999765433333334455554 899999987654
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=289.78 Aligned_cols=210 Identities=21% Similarity=0.330 Sum_probs=181.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc----
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV---- 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~---- 278 (450)
+-.+|+++.+.++++.++...+..++++++.|+.+|+..+.|+|||||||||||.||+|+||+.+.+|+.|...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 4458999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred --CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 279 --QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 279 --~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
.++..++.+|..+. .|||||+||||++.+ .|++.. .....+.+++||.+|||+.. ..++.||++||+
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p--~R~~~~-----s~~s~RvvNqLLtElDGl~~--R~gV~viaATNR 656 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVP--RRSDEG-----SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNR 656 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc--ccCCCC-----chhHHHHHHHHHHHhccccc--ccceEEEeecCC
Confidence 36788999999875 799999999999986 333322 34567889999999999965 578999999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-----HHHHHHHHhcCCCCHHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-----FEQIEEMLMKVNVTPAEVAGELMK 421 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-----~~ei~~l~~~~~~spa~i~~~L~~ 421 (450)
|+.+|||++||||+|..++++.|+.++|..|++........++ +++|....+-.+||.||++..+..
T Consensus 657 PDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 657 PDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred CcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999987543333 334444333348999999876543
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=293.28 Aligned_cols=223 Identities=23% Similarity=0.315 Sum_probs=184.3
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc------
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV------ 278 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~------ 278 (450)
.+|.++.|.+....++++.+.. +.+|+.|..+|..++||+|||||||||||+||+|+|++++.||+.+...++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 3699999999999999998875 999999999999999999999999999999999999999999999998887
Q ss_pred CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc--CCCCeEEEEEcCC
Q 013083 279 QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC--CSEGRIIIFTTNH 354 (450)
Q Consensus 279 ~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~--~~~~~iiI~TTN~ 354 (450)
.+++.|+++|..+. .|||+||||||++.+ +|... +..-.++++.+||+.||++... .+..++||++||+
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~p--kRe~a-----qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITP--KREEA-----QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeeccccccc--chhhH-----HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 46899999999986 699999999999976 33221 1234578999999999998654 3577999999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEISLQGI 434 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~al~~l 434 (450)
|+.|||||+|+||||..|.+..|+..+|.+|++..+....+...-++.+++. +||+.|..-|+......+..|++++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~---lTPGfVGADL~AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK---LTPGFVGADLMALCREAAFVAIKRI 415 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh---cCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887554444445555555 3444444444443344677888886
Q ss_pred HHHH
Q 013083 435 VKFL 438 (450)
Q Consensus 435 ~~~l 438 (450)
.+.-
T Consensus 416 ld~~ 419 (802)
T KOG0733|consen 416 LDQS 419 (802)
T ss_pred hhcc
Confidence 6543
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=293.69 Aligned_cols=213 Identities=28% Similarity=0.395 Sum_probs=181.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
..+.+|++++|.++.|++|.+.+ .|+++|+.|.++|...++|+||+||||||||.||+|+|.+.+.||+.++.+++-
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34478999999999999999966 699999999999999999999999999999999999999999999999999882
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
..+.++.+|..+. .||||+|||||.+... |. ....+..+.+...++++||.+|||+.+ ..++|++++||
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~--r~-G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tn 458 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRK--RG-GKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATN 458 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccc--cc-ccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccC
Confidence 4788899998876 6999999999999763 22 111123355667899999999999977 47899999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC-cHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH-LFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+++-||+||+||||||++|+++.|+...|.+|++.++...... ...++..++..+ ++++||+++.+.
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999999999765332 233444455444 899999988765
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.6e-32 Score=282.92 Aligned_cols=229 Identities=22% Similarity=0.316 Sum_probs=184.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc----
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV---- 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~---- 278 (450)
+..+|+++.|.+++|.+|++-+..++++++.|.. |...+.|+|||||||||||.+|+|+|.++...|+.|...++
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 3458999999999999999999999999998875 66667899999999999999999999999999999998887
Q ss_pred --CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 279 --QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 279 --~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
++++++|+.|.+++ +|||||+||+|.+.+.+++.+ ++.+...+.+++||.+|||+.......++||++||+
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-----DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG-----DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC-----CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 57899999999986 699999999999988443332 235778899999999999998655788999999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCH-HHHHHHHHHHhCccCCCcHHHHHHHHhcC--CCCHHHHHHHHHHhccCcHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTA-SVFEQLAFNYLGISHHHLFEQIEEMLMKV--NVTPAEVAGELMKSKCKYAEISL 431 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~-~~r~~l~~~~l~~~~~~l~~ei~~l~~~~--~~spa~i~~~L~~~~~~~~~~al 431 (450)
|+-|||||+||||||.-++++.+.. +.+..+++..-.....+-.-.+.++++.. .+|.||+-..+-. ..-.|+
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSd----A~l~Ai 896 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSD----AMLAAI 896 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHH----HHHHHH
Confidence 9999999999999999999999855 45566666554433222222334444443 7999998765533 445566
Q ss_pred HHHHHHHHHH
Q 013083 432 QGIVKFLHAK 441 (450)
Q Consensus 432 ~~l~~~l~~~ 441 (450)
++.+.-++..
T Consensus 897 kR~i~~ie~g 906 (953)
T KOG0736|consen 897 KRTIHDIESG 906 (953)
T ss_pred HHHHHHhhhc
Confidence 6665555544
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=249.27 Aligned_cols=211 Identities=25% Similarity=0.355 Sum_probs=176.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc-----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV----- 278 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~----- 278 (450)
-.++.++.|.+-+|++|.+.++.++...+.|+++|+.++||+|||||||||||+|++|+|++....|+.+..+++
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 279 -QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 279 -~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
.....++.+|.-+. .|+||||||||++.. +|-+.. .+.+.+-+.++-.|||.|||+.. .-++-+|++||+.
T Consensus 231 gegprmvrdvfrlakenapsiifideidaiat--krfdaq--tgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQ--TGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhcccc--ccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 24566777776654 799999999999965 222211 12244567889999999999966 4778999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELM 420 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~ 420 (450)
+.|||||+||||+|+.|+||+|+..+++-++.......+..-..+++.++.+ ..+|.|+|...+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 9999999999999999999999999999888877665544444456666544 4688999877664
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=265.62 Aligned_cols=214 Identities=25% Similarity=0.353 Sum_probs=174.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+.+|++|.+.+..++.+++.|...|.++++|+|||||||||||++++++|++++.+++.+.++.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999876652
Q ss_pred ----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+...++.+|..+ ..|+||+|||||.++. .+.+.. .+.....+..+..||+.+|++.. ..+++||+|||
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~--~r~~~~--~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN 292 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQ--TGADREVQRILLELLNQMDGFDQ--TTNVKVIMATN 292 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc--cccccc--CCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecC
Confidence 245567777654 4799999999999875 222111 11122345678899999999865 35788999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+++.+|||++||||||.+|++++|+.++|..|++.++.........++..++... ++|++||...+..
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~e 361 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQE 361 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998755333333455666544 8999999776653
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-31 Score=245.79 Aligned_cols=214 Identities=24% Similarity=0.326 Sum_probs=175.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc--
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV-- 278 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~-- 278 (450)
.-+-++++-+.|.+.+.++|.+.++.+.++|+.|..+|++.+.|+|||||||||||.||+|+|.+....|+.++.+++
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 445567899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ----CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 279 ----QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 279 ----~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
......+++|.-+. .|+|||+||||++...+ ... +++.+++-+.+.-.|||.+||+.. ..+.-+|++|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r--~e~--~~ggdsevqrtmlellnqldgfea--tknikvimat 293 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR--VES--GSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMAT 293 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeeccccccccc--ccC--CCCccHHHHHHHHHHHHhcccccc--ccceEEEEec
Confidence 23456678877664 79999999999996522 111 122355678899999999999977 4778899999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+.+-|||||+||||+|+.|+||.|+.++|.+|++-+-...+.--.-.+..+++.. +.|.|++...+.
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 99999999999999999999999999999999998766543322222344444443 677888766553
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=253.41 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=175.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
+...+..+|.++.|.+.+.++|.+.++.++.+|++|...|+.++.|++|||+||||||.||+|+||...+.|+.+-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 44555668999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred -----C-CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 279 -----Q-SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 279 -----~-~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
. ...-.+++|.-+ ..|||+||||||++.. +|-+.. ++...+-++++-.|||.+||+.+ .+.+-||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~--SggerEiQrtmLELLNQldGFds--rgDvKvim 329 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSN--SGGEREIQRTMLELLNQLDGFDS--RGDVKVIM 329 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCC--CccHHHHHHHHHHHHHhccCccc--cCCeEEEE
Confidence 2 344556777655 4799999999999975 333322 22234567788899999999977 57889999
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHH
Q 013083 351 TTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 351 TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L 419 (450)
+||+.+.|||||+||||+|+.|+||.|+...++.|+..+-......-...++.++.. ..+|.|||...+
T Consensus 330 ATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAic 399 (440)
T KOG0726|consen 330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAIC 399 (440)
T ss_pred ecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHH
Confidence 999999999999999999999999999999999988765543322222345556543 479999986655
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=267.61 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=185.2
Q ss_pred cccCCC--CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 199 MVLKHP--MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 199 ~~~~~p--~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
+++..+ ..|+++.|..++|+.+.+.+..+.+++..|.+.+.+.+.|+|||||||||||.||.|+|..++..|+.+...
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 444444 469999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc------CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE
Q 013083 277 DV------QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII 348 (450)
Q Consensus 277 ~~------~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii 348 (450)
++ .++..+|.+|.+++ +|||||+||+|.+.+.++.+ +.+...+.+++||.+|||... -.++.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-------sTGVTDRVVNQlLTelDG~Eg--l~GV~i 806 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-------STGVTDRVVNQLLTELDGAEG--LDGVYI 806 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-------CCCchHHHHHHHHHhhccccc--cceEEE
Confidence 87 47889999999875 79999999999998733222 246677889999999999876 478999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 349 IFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 349 I~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+++|.+|+.+||||+||||+|.+++.|.|+..+|.+|++..-+....+-...++-++..+ ++|.||++..|-.
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999876654444445555565544 8999999887765
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=255.21 Aligned_cols=207 Identities=21% Similarity=0.306 Sum_probs=168.1
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-----
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ----- 279 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~----- 279 (450)
..|++++|.++.|+-|.+.+..++.-|++|+.+..|| +|+|++||||||||.||+|+|.+++..|+.|..+.+.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRG 287 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRG 287 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhcc
Confidence 5789999999999999999999999999999999999 6999999999999999999999999999999988883
Q ss_pred CchhHHHH-HhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC-C-eEEEEEcCC
Q 013083 280 SNSDLRSL-LLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE-G-RIIIFTTNH 354 (450)
Q Consensus 280 ~~~~L~~l-~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~-~-~iiI~TTN~ 354 (450)
..+.|.++ |.-+. .|++|||||||.++. .|+.. ++...+++.-+.||..|||+...... . ++|+++||.
T Consensus 288 eSEKlvRlLFemARfyAPStIFiDEIDslcs--~RG~s----~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 288 ESEKLVRLLFEMARFYAPSTIFIDEIDSLCS--QRGGS----SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred chHHHHHHHHHHHHHhCCceeehhhHHHHHh--cCCCc----cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 23445444 44433 799999999999986 22221 23456778899999999998765322 1 566689999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+.||+||+| ||...|++|.|+.++|+.|++..++.......-.++.++++. ++|.+||...+.
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999 999999999999999999999998754322222344444433 799999876654
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-30 Score=267.37 Aligned_cols=233 Identities=26% Similarity=0.359 Sum_probs=190.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ--- 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~--- 279 (450)
...+|.+++|.++.|+++.+.+ .|++.|..|..+|...++|+||+||||||||.||+|+|.+.+.|++.++.+++-
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3468999999999999998866 699999999999999999999999999999999999999999999999999972
Q ss_pred ---CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 280 ---SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 280 ---~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
..+..|.+|.++. .||||||||||+... .|... .+..+.+...++++||.+|||+.. +.++|++++||+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr--~Rg~g--~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNR 297 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAG--LGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNR 297 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhccc--ccCCC--CCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCC
Confidence 5788999999986 599999999999965 22222 233455667899999999999974 478999999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHHh-----------
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMKS----------- 422 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~~----------- 422 (450)
|+-+||||+||||||++|.++.|+...|++|++.+...........+..++..+ +++.|++++.+...
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 999999999999999999999999999999999776544322223333344444 79999998776310
Q ss_pred -ccCcHHHHHHHHHHHHHHHh
Q 013083 423 -KCKYAEISLQGIVKFLHAKM 442 (450)
Q Consensus 423 -~~~~~~~al~~l~~~l~~~~ 442 (450)
...+.+.|.++++.-.+++.
T Consensus 378 i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 378 ITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred EeccchHHHHHHHhcCcCcCC
Confidence 13466777777766555443
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=3.1e-29 Score=262.27 Aligned_cols=183 Identities=23% Similarity=0.375 Sum_probs=151.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc----------EE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD----------IY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~----------~~ 271 (450)
.++.+|++++|.+++++++.+.+..++.+++.|...|+++++|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999765 33
Q ss_pred EEecCccC------CchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc
Q 013083 272 DLDLTDVQ------SNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW 339 (450)
Q Consensus 272 ~l~~~~~~------~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~ 339 (450)
.+..+++. ++..++.+|..+. .|+||||||+|.++. .|.... ........++.||+.|||+.
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~----s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGV----SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCc----cchHHHHHHHHHHHHhcccc
Confidence 33333331 2345666665442 589999999999975 222111 12224567899999999987
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 340 SCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 340 ~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
+. ++++||+|||+++.|||||+||||||.+|+|++|+.++|++|++.|+..
T Consensus 330 ~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 63 6799999999999999999999999999999999999999999999864
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=7.7e-29 Score=254.66 Aligned_cols=214 Identities=23% Similarity=0.283 Sum_probs=173.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++++++.+.+..++.+++.|...|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+...++.+|..+. .|+||||||||.++.. +.... .+.....+.++..+++.++++.. ..+++||+|||
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~--r~~~~--~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn 278 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAK--RTDSG--TSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATN 278 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcc--cccCC--CCccHHHHHHHHHHHHhccccCC--CCCEEEEEecC
Confidence 3455667776543 6899999999998752 22111 11122345678889998998754 35789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+++.+|++++||||||..|++|.|+.++|.+|++.++..........+..++..+ +++++|+...+..
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~e 347 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTE 347 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998654332223345555443 8999999877653
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=235.38 Aligned_cols=205 Identities=20% Similarity=0.339 Sum_probs=175.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ--- 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~--- 279 (450)
...+|++++|+++.|++. ..+..|+.+|+.|..+. ++++|+|||||||||++|+|+|++.+.|++.+..+++-
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 445899999999998875 55668999999888865 78999999999999999999999999999999998873
Q ss_pred ---CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 280 ---SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 280 ---~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
....+++++..+. .|||+||||+|++.- +|.-++ -.++-..+++.||..|||+.. +++++.|++||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQe----lRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~ 263 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQE----LRGDVSEIVNALLTELDGIKE--NEGVVTIAATNR 263 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHH----hcccHHHHHHHHHHhccCccc--CCceEEEeecCC
Confidence 3567888988875 799999999999853 222211 134566789999999999975 689999999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|+.||||+++ ||...|+|..|+.++|..|+..|......+....++.++..+ ++|..||.+.+++
T Consensus 264 p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 264 PELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred hhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9999999999 999999999999999999999999877777766677777654 8999999998876
No 19
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=5.8e-29 Score=263.46 Aligned_cols=212 Identities=27% Similarity=0.397 Sum_probs=174.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++|+++.+.+ .++..++.|...|...++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 34568999999999999998765 468899999999999999999999999999999999999999999999987652
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+...++.+|..+. .|+||+|||||.+... +.... .........+++.||+.||++.. ..+++||+|||
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~--r~~~~--~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ--RGAGL--GGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhc--cccCc--CCccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 3567888887763 6899999999999752 21111 11123345788999999999865 46789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+++.+||+|+||||||.+|+++.|+.++|.+|++.++.........++..++... ++|++|+...+.
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998765443344566666655 799999977654
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.2e-28 Score=272.28 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=176.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc-----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV----- 278 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~----- 278 (450)
..+|++++|.+++|+.+.+.+..++.+++.|...|..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 279 -QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 279 -~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
.++..++.+|..+. .||||||||||.++. .+.... ........++.||..|||+.. ..+++||+|||++
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~--~r~~~~----~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~ 600 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAP--ARGARF----DTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRP 600 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc--cCCCCC----CccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCCh
Confidence 24667889988764 689999999999976 222111 122345688999999999865 4679999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+.||+|++||||||.+|++|+|+.++|.+||+.++.........++..+++.. ++|++|+...+.
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999888655433333456666554 799999977554
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=7.8e-29 Score=255.90 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=174.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
+...++.+|+++.|.+++++++.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C------CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 279 Q------SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 279 ~------~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
. ....++.+|..+ ..|+||+|||||.++. .+.... .+.....+.++..||+.+|++.. ..++.||+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--kR~~~~--sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ 327 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT--KRYDAT--SGGEKEIQRTMLELLNQLDGFDS--RGDVKVIM 327 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc--cCCCCC--CcccHHHHHHHHHHHHHHhhhcc--cCCeEEEE
Confidence 2 234466666554 4689999999999875 222111 11122335677889999999754 35789999
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHH
Q 013083 351 TTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELM 420 (450)
Q Consensus 351 TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~ 420 (450)
|||+++.+|++++||||||.+|+|+.|+.++|.+|++.++..........++.++.. .++|++|+...+.
T Consensus 328 ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 328 ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999865533222345555544 4899999977664
No 22
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.1e-29 Score=232.26 Aligned_cols=207 Identities=23% Similarity=0.293 Sum_probs=166.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc----
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV---- 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~---- 278 (450)
+..+++++.|.+.+.+++++.+..++.+++.|.++|+.++.|+|+|||||||||.+|+|.|...+..|..+-..++
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 3447899999999999999999999999999999999999999999999999999999999999999888776665
Q ss_pred -CCc-hhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 279 -QSN-SDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 279 -~~~-~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
... .-++..|.-+ ..|+||||||+|+++. +|-+.+ ...+.+.+++.-.|||.+||+.+ .+.+-||++||+
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSe--k~GDREVQRTMLELLNQLDGFss--~~~vKviAATNR 319 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSE--KAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNR 319 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhcc--cccccc--ccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccc
Confidence 222 3345555444 4799999999999975 333322 12345567889999999999977 477889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEV 415 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i 415 (450)
.+-|||||+|.||+|+.|+||.|+.+.|..|++.+-...+....-.++++++.+ +|..|+.
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQc 381 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQC 381 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhh
Confidence 999999999999999999999999999999998776554333333344454443 4666665
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-29 Score=239.20 Aligned_cols=200 Identities=25% Similarity=0.350 Sum_probs=172.3
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-----
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ----- 279 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~----- 279 (450)
..|++++|.+..|+.+.+.+..+++.|++|..-.+|| +|+|||||||||||+||+|+|.+.+..|+.++-+++.
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 4689999999999999999999999999999888888 7999999999999999999999999999999998872
Q ss_pred -CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC
Q 013083 280 -SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE 356 (450)
Q Consensus 280 -~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~ 356 (450)
++.-++.+|.-+. +|+||||||||.++. .|.. +++...+++-..||..|.|+-.. .++++|+++||-|+
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDslcg--~r~e-----nEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSLCG--SRSE-----NESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPW 280 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--CCCC-----CchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCch
Confidence 4455567776654 799999999998875 2222 12345677888999999998653 57899999999999
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHH
Q 013083 357 KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEV 415 (450)
Q Consensus 357 ~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i 415 (450)
.||.|++| ||+..|++|.|...+|..+++-.++...|.+ ..++.+|...+ ++|.+||
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDI 339 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCce
Confidence 99999999 9999999999999999999999999988887 45677777655 7998887
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=3.4e-28 Score=254.61 Aligned_cols=204 Identities=22% Similarity=0.276 Sum_probs=162.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ---- 279 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~---- 279 (450)
..+|++++|.+.+|+.+.+....|. ......|.+.++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4579999999999998887665553 234667999999999999999999999999999999999999987652
Q ss_pred --CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 280 --SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 280 --~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
++..++++|..+ ..||||+|||||.++. ++.. ....+.....+..|+..|+.. ..+++||+|||++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~--~~~~----~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~ 370 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFS--NSES----KGDSGTTNRVLATFITWLSEK----KSPVFVVATANNI 370 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc--cccC----CCCchHHHHHHHHHHHHHhcC----CCceEEEEecCCh
Confidence 466788888754 4799999999998864 1111 112234566788888888753 3568999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC--cHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH--LFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~--l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+.|||+++||||||.+|+++.|+.++|.+|++.++...... ...++..++..+ ++|++||...+.
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999764321 133456666554 899999976554
No 25
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.2e-27 Score=257.56 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=173.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
....+|++++|.++.|+++.+. ..++..++.|...|...++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3456899999999999988665 4678899999999999999999999999999999999999999999999988763
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
....++.+|..+. .||||+|||||++.. .+.... +..+.....+++.||..+|++.. ..+++||+|||
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--~r~~~~--~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN 329 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR--QRGAGI--GGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATN 329 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh--cccCCC--CCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecC
Confidence 3456777887754 689999999999964 222111 11223445789999999999865 46789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+++.+|+||+||||||.+|+++.|+.++|.+|++.++..........+..++... +++++|+...+.
T Consensus 330 ~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 330 RVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred chHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999764433344566666665 799999977664
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-27 Score=250.09 Aligned_cols=211 Identities=26% Similarity=0.406 Sum_probs=178.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
....+|+++.|..+.|+.+.+.+..++..++.|...|+..++|+|||||||||||++|+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 344589999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
++..++++|..+. .||||||||+|.++. .+.... .......+++||..|||+.. ..++++|+|||
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~--~r~~~~-----~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN 386 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS--GRGPSE-----DGSGRRVVGQLLTELDGIEK--AEGVLVIAATN 386 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc--cCCCCC-----chHHHHHHHHHHHHhcCCCc--cCceEEEecCC
Confidence 5788999998876 799999999999976 222111 12225789999999999866 47789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH--HHHHHHHh-cCCCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF--EQIEEMLM-KVNVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~--~ei~~l~~-~~~~spa~i~~~L~~ 421 (450)
+|+.+|+|++||||||..|++|.|+.++|.++++.++......+. -.++.+++ ..+++.+||...+..
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999986544322 23344444 336999999887764
No 27
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-28 Score=226.38 Aligned_cols=214 Identities=22% Similarity=0.278 Sum_probs=173.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
+.-.+-.++.++.|-.++.+++.+.++.++-+|+.|-++|+.++.|+|||||||||||..|+|+||..+.-|+.+=.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 33445568999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ------CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 279 ------QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 279 ------~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
.....++++|.-+. +.||||+||||++...+-.+.. +.+.+.+.+.-.|++.+||+-. .+++-+++
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~----ggdnevqrtmleli~qldgfdp--rgnikvlm 321 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA----GGDNEVQRTMLELINQLDGFDP--RGNIKVLM 321 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC----CCcHHHHHHHHHHHHhccCCCC--CCCeEEEe
Confidence 23456788887664 6899999999999763322211 1245667889999999999965 57788899
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC---cHHHHHHHHhcCCCCHHHHHHHHH
Q 013083 351 TTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH---LFEQIEEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 351 TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~---l~~ei~~l~~~~~~spa~i~~~L~ 420 (450)
+||+|+.|||||+||||+|+.++|..|+.+.|..|++.+-...+.+ -++-+..+..+ -|.|++...+.
T Consensus 322 atnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvct 392 (435)
T KOG0729|consen 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCT 392 (435)
T ss_pred ecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHH
Confidence 9999999999999999999999999999999999888655433222 24445555443 56777765553
No 28
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=2e-27 Score=197.11 Aligned_cols=97 Identities=42% Similarity=0.697 Sum_probs=93.3
Q ss_pred hCCHHHHHHHHHHHhHhhc-cCCCceEEEEeccCCCCcchHHHHHHHHhcccCCcccccceeeeeccCcCceEEEccCCC
Q 013083 28 LLPTDIQDYIYSSLHSLSY-HISSQITIVIEEFQGLSINEVFDAANVYLGSMATTSSAQRFQVMKSEKEKRIGTTLNRNE 106 (450)
Q Consensus 28 ~~P~~l~~~~~~~~~~~~~-~~~~~~ti~i~e~~~~~~n~~y~a~~~Yl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (450)
|||++||+++.++++++++ +++||+||+|+|++|+++|++|+||++||++++++++ +||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceEEecCCCC
Confidence 6899999999999988776 8999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eEeeccCCeeeEEEEEEee
Q 013083 107 EIVDVFGDLKLKWKFVCKQ 125 (450)
Q Consensus 107 ~~~d~f~g~~~~w~~~~~~ 125 (450)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998763
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.1e-26 Score=230.35 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=137.5
Q ss_pred HHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC------CchhHHHHHhcCC-------CceEEEE
Q 013083 233 YYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------SNSDLRSLLLSMP-------SRSMLVI 299 (450)
Q Consensus 233 ~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------~~~~L~~l~~~~~-------~~sIlvi 299 (450)
+....|+.++++++||||||||||.+|+++|++++.+++.++.+++. ++..++++|..+. +||||||
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 33446788899999999999999999999999999999999999883 5788999997653 6999999
Q ss_pred EcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc--------c--ccCCCCeEEEEEcCCCCCCCccccCCCcce
Q 013083 300 EDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL--------W--SCCSEGRIIIFTTNHKEKLDPALLRPGRMD 369 (450)
Q Consensus 300 DdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~--------~--~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d 369 (450)
||||.+++ .+.... .....+.....||+.+|+. | ......++||+|||+|+.|||+|+||||||
T Consensus 219 DEIDA~~g--~r~~~~----~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 219 NDLDAGAG--RFGTTQ----YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred ehhhhcCC--CCCCCC----cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 99999876 222110 1112344457899998863 3 112456899999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHH
Q 013083 370 MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L 419 (450)
..+ ..|+.++|.+|++.++...+.. ..++..+++...--+.|.-..|
T Consensus 293 k~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 293 KFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHH
Confidence 965 6899999999999998776443 5788888876543343333333
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=2.4e-26 Score=234.59 Aligned_cols=214 Identities=23% Similarity=0.282 Sum_probs=168.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
..+..+|++++|.+++++++.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ ..|+||+|||+|.+.. .+.... .+.....+.++..++..++++.. ..++.||+||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~--~~~~~~--~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~tt 268 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA--KRTDSG--TSGDREVQRTLMQLLAELDGFDP--RGNVKVIAAT 268 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc--ccccCC--CCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEec
Confidence 123455666544 3689999999999864 221111 11122345678888988888643 3578899999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+++.+|++++||||||..|+++.|+.++|.+|++.++..........+..++... +++++|+...+.
T Consensus 269 n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 269 NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999988554322212344454443 799999977654
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.4e-26 Score=262.48 Aligned_cols=197 Identities=18% Similarity=0.178 Sum_probs=147.6
Q ss_pred ChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc----------------------------
Q 013083 230 GKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN---------------------------- 281 (450)
Q Consensus 230 ~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~---------------------------- 281 (450)
+++.+.+.|..+++|+||+||||||||+||+|+|+++++|++.++++++...
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 4667788999999999999999999999999999999999999987765310
Q ss_pred ---------------------hhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 282 ---------------------SDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 282 ---------------------~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
..++.+|..+ .+||||+|||||.+.. ......+++.||+.|||.
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~-------------~ds~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV-------------NESNYLSLGLLVNSLSRD 1764 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC-------------CccceehHHHHHHHhccc
Confidence 1145566655 4799999999999964 112235689999999986
Q ss_pred ccc-CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH---HHHHHHHhcC-CCCHH
Q 013083 339 WSC-CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF---EQIEEMLMKV-NVTPA 413 (450)
Q Consensus 339 ~~~-~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~---~ei~~l~~~~-~~spa 413 (450)
... ...+++||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+.....++. ..+..++..+ |+|+|
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 421 246789999999999999999999999999999999999999887754322211111 2345566554 89999
Q ss_pred HHHHHHHHh------------ccCcHHHHHHHHHHHHH
Q 013083 414 EVAGELMKS------------KCKYAEISLQGIVKFLH 439 (450)
Q Consensus 414 ~i~~~L~~~------------~~~~~~~al~~l~~~l~ 439 (450)
|++..+-.+ ...+.+.|+.+.+--++
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh
Confidence 997765321 01345666666654443
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=222.08 Aligned_cols=203 Identities=24% Similarity=0.320 Sum_probs=166.7
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-----
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ----- 279 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~----- 279 (450)
.+|+.+.|.-++..++++-+..++.++..|.++|+.+|.|++||||||||||.+++++|..++.+++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 389999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred -CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC
Q 013083 280 -SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE 356 (450)
Q Consensus 280 -~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~ 356 (450)
+..-+++.|..+. .||||++||||+... .+ .++..+++..-+.||..|++.|||+.. -..+-+|+|||+|+
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigG--Rr--~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGG--RR--FSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPD 282 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhcc--EE--eccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcc
Confidence 3456777887775 689999999999875 22 111122345567899999999999865 36788999999999
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc---cCCCcHHHHHHHHhcCCCCHHHH
Q 013083 357 KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI---SHHHLFEQIEEMLMKVNVTPAEV 415 (450)
Q Consensus 357 ~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~---~~~~l~~ei~~l~~~~~~spa~i 415 (450)
.|||||+||||+|+.+++|.|+...|..+++-.-.. ...-.++.+.++.+. +..+|+
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~ 342 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADL 342 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHH
Confidence 999999999999999999999999999877643321 122236667776654 445553
No 33
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.7e-26 Score=223.17 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=170.4
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhC-CCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC----
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVG-KAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS---- 280 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~---- 280 (450)
+|+++.|.+.+++.+.+.+..++.+|++|...+ ..+++|+|||||||||||.+|+|+|++.+.+++.|..+.+.+
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 799999999999999999999999999997433 345789999999999999999999999999999999998853
Q ss_pred --chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC
Q 013083 281 --NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE 356 (450)
Q Consensus 281 --~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~ 356 (450)
+.-++.+|.-+. +|+||+|||+|.++..+ .. ++.......-++|+..-||+.+..+..++|.++||+|.
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s-----~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RS-----TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--cc-----chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 333455555444 79999999999997632 21 12334555677888888999887555678889999999
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 357 KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 357 ~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
.+|.|++| ||...++++.|+..+|++|++-+|..+..+-.-++.++++.+ |+|..|+-+.+..
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 999999999999999999999999877554444556666554 8999999887765
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=1.3e-25 Score=243.85 Aligned_cols=211 Identities=25% Similarity=0.366 Sum_probs=169.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ---- 279 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~---- 279 (450)
..+|+++.|.+..++++.+.+ .++..+..|...|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~-~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHH-HHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 457999999999999987765 467778888888888889999999999999999999999999999999987652
Q ss_pred --CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 280 --SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 280 --~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
....++.+|..+. .||||||||||.++. .+.... +........+++.||..|||+.. ..++++|+|||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~--~r~~~~--~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGL--GGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhh--ccCCCC--CCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 3456777777654 689999999999975 222111 11123345689999999999865 4678999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+.||+|++||||||++|+++.|+.++|.+|++.++..........+..+.+.. ++|++|+...+..
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999765332223344555544 8999999887653
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=2e-24 Score=238.80 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=169.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ--- 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~--- 279 (450)
+..+|++++|.+++++.|.+.+..++.+++.|...|+.+++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 280 ---SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 280 ---~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
....++.+|..+ ..|+||+|||||.+.. .+... ........+..|++.||++.. ...++||++||+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~--~r~~~-----~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~ 323 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP--KREEV-----TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNR 323 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--cccCC-----cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCC
Confidence 245677888765 3689999999999875 22111 112235678899999999855 356888899999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L 419 (450)
++.+|++++|||||+.+|+++.|+.++|.+|++.+...........+..+++. .+++++++....
T Consensus 324 ~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 324 PDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred hhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999987754432222234555544 378999886644
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=217.16 Aligned_cols=207 Identities=23% Similarity=0.329 Sum_probs=178.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc----
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV---- 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~---- 278 (450)
++.+ +.+.|...+...+.+.+...+..+..|...|.++++|+|+|||||||||.+++++|++.+..++.+++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5556 78888899999999999999999999999999999999999999999999999999999999999999877
Q ss_pred --CCchhHHHHHhcCC--C-ceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 279 --QSNSDLRSLLLSMP--S-RSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 279 --~~~~~L~~l~~~~~--~-~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
.+++.|++.|..+. + |+||+|||+|.+++ ++.... .....+.++|+..|||..+ ..++|++++||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p--~r~~~~------~~e~Rv~sqlltL~dg~~~--~~~vivl~atn 328 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP--KREGAD------DVESRVVSQLLTLLDGLKP--DAKVIVLAATN 328 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC--cccccc------hHHHHHHHHHHHHHhhCcC--cCcEEEEEecC
Confidence 36788999998875 4 99999999999986 222211 1467889999999999864 47789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~~ 421 (450)
+|+.|||+++| ||||..++++.|+..+|.++++.+.....+.-..++..+... .+++.+|+...+..
T Consensus 329 rp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 329 RPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred CccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887766644666666654 48999999877654
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=229.19 Aligned_cols=208 Identities=20% Similarity=0.256 Sum_probs=167.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-----CcEEEEecCc
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK-----FDIYDLDLTD 277 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~-----~~~~~l~~~~ 277 (450)
.-..|++++|...++..+.+.+..++.+|+.|.+.++-++||+|+|||||||||++|+|+|..+. ..++.-+..+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 33479999999999999999999999999999999999999999999999999999999999982 2333322222
Q ss_pred c------CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE
Q 013083 278 V------QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII 349 (450)
Q Consensus 278 ~------~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI 349 (450)
. ..+..++-+|..+. .|+||++||||.+.+.+.... ......+++.||-.|||+.+ .+.+++|
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-------Eqih~SIvSTLLaLmdGlds--RgqVvvi 410 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-------EQIHASIVSTLLALMDGLDS--RGQVVVI 410 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-------HHhhhhHHHHHHHhccCCCC--CCceEEE
Confidence 2 34778999998876 699999999999987432211 23345678999999999976 5779999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHH-HHHHhc-CCCCHHHHHHHH
Q 013083 350 FTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQI-EEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 350 ~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei-~~l~~~-~~~spa~i~~~L 419 (450)
++||+++.+||||+||||||..++||+|+.+.|.+|+...-.....++.... ..+.+. .++-.||+...+
T Consensus 411 gATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 411 GATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred cccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 9999999999999999999999999999999999999877766666664444 344433 367778864443
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-23 Score=213.67 Aligned_cols=212 Identities=19% Similarity=0.248 Sum_probs=178.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
...+..|++++|..+.|+.+.+.+...+.++..|....-+ .+|+||.||||||||.|++|+|.+++..|+.+..+++.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p-~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP-VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccc-cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 4455789999999999999999999999999999887544 57999999999999999999999999999999999884
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
++..++.+|.-+ .+|+||||||||.++. .|.+. ...........+|..+++..+...+.+++|+||
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls--~Rs~~-----e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLS--KRSDN-----EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHh--hcCCc-----ccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 245566666544 4799999999999986 33222 234556778889999999988877788899999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHHHh
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELMKS 422 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~~~ 422 (450)
|.|+.+|.|++| ||...+++|.|+.+.|..+|++++....+.+ ..+++.+++.+ +++..|+.+.+...
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 999999999999 9999999999999999999999998776655 46777777665 79999998877654
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=212.93 Aligned_cols=221 Identities=23% Similarity=0.332 Sum_probs=160.2
Q ss_pred CCCccc--ccChHHHHH-HHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-cEEEEecCcc--
Q 013083 205 MNFNTL--ALDSELKKA-IMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-DIYDLDLTDV-- 278 (450)
Q Consensus 205 ~~f~~l--~~~~~~k~~-i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-~~~~l~~~~~-- 278 (450)
..|+++ .|.+..-.. ..+....-+-.|+...++|.+.-+|+|||||||||||.+|+.|..-|+. +--.++..++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 467776 233322222 2333333334578889999999999999999999999999999999975 4455666665
Q ss_pred ----CCchhHHHHHhcCC----------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC
Q 013083 279 ----QSNSDLRSLLLSMP----------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE 344 (450)
Q Consensus 279 ----~~~~~L~~l~~~~~----------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~ 344 (450)
.+++.+|++|..+. .--||++||||+++. .|++. +++.+.....+++||.-|||+..- .
T Consensus 296 KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK--qRGS~---~g~TGVhD~VVNQLLsKmDGVeqL--N 368 (744)
T KOG0741|consen 296 KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK--QRGSM---AGSTGVHDTVVNQLLSKMDGVEQL--N 368 (744)
T ss_pred HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH--hcCCC---CCCCCccHHHHHHHHHhcccHHhh--h
Confidence 47899999998873 234999999999986 33322 223566778899999999999763 7
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc-CC-Cc--HHHHHHHHhc-CCCCHHHHHHHH
Q 013083 345 GRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS-HH-HL--FEQIEEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 345 ~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~-~~-~l--~~ei~~l~~~-~~~spa~i~~~L 419 (450)
++++|+-||+++.+|+||+||||+.++++++.|+++.|.+|++-+-... ++ .+ .-.+++++.. ..+|.||+.+..
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 8999999999999999999999999999999999999999987655432 11 11 1223444333 369999997765
Q ss_pred HHhccCcHHHHHHHHHH
Q 013083 420 MKSKCKYAEISLQGIVK 436 (450)
Q Consensus 420 ~~~~~~~~~~al~~l~~ 436 (450)
.. ...-|+++.++
T Consensus 449 ks----A~S~A~nR~vk 461 (744)
T KOG0741|consen 449 KS----AQSFAMNRHVK 461 (744)
T ss_pred HH----HHHHHHHhhhc
Confidence 43 22345555444
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=2e-19 Score=168.41 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=129.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.+|++++|+++++..+.-.+.....+.+ .-.++|||||||+||||||..||++++.++...+...+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~--------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGE--------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCC--------CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 46899999999999999887666655543221 1247999999999999999999999999999999888877
Q ss_pred chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-----ccCC---------CCe
Q 013083 281 NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-----SCCS---------EGR 346 (450)
Q Consensus 281 ~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-----~~~~---------~~~ 346 (450)
..++..++.....+.|||||||+.+- +..-..|+..|+... ..++ ...
T Consensus 89 ~~dl~~il~~l~~~~ILFIDEIHRln------------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 AGDLAAILTNLKEGDILFIDEIHRLN------------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp CHHHHHHHHT--TT-EEEECTCCC--------------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHHHHHHhcCCCcEEEEechhhcc------------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 88999999999999999999999883 233445666665322 1111 125
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHH-HHhcCCCCHHHHHHHHHH
Q 013083 347 IIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEE-MLMKVNVTPAEVAGELMK 421 (450)
Q Consensus 347 iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~-l~~~~~~spa~i~~~L~~ 421 (450)
.+|++|++...|.+.|+. ||....++.+.+.++..+|+++.....+.++.++... ++....-||. |+..|++
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPR-iAnrll~ 223 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPR-IANRLLR 223 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHH-HHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChH-HHHHHHH
Confidence 788999999999999999 9999999999999999999998776666666554433 3344445554 3455554
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.1e-20 Score=181.76 Aligned_cols=221 Identities=22% Similarity=0.236 Sum_probs=162.1
Q ss_pred cCcchhHHHHHhhHHHHHHHHHHHHcCceeEEEecCCCccc-----ccccccCCCCCCcccccChHHHHHHHHHHHHHhc
Q 013083 155 HRKQKDVVLNLYLPHVLEKAKAIKEENHMVKLHTVEYGCWD-----ANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMN 229 (450)
Q Consensus 155 ~~~~~~~vl~~yl~~vl~~~~~~~~~~r~~~l~~~~~~~w~-----~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~ 229 (450)
..+.-..|..+|+..+|-+...|++.++..--|...-.... ..........+|+++++.+.+++.|.+......+
T Consensus 297 Ttkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaN 376 (630)
T KOG0742|consen 297 TTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATAN 376 (630)
T ss_pred eccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcc
Confidence 34455679999999999998888877765422211000000 0001122334599999999999999876665554
Q ss_pred ChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-----CchhHHHHHhcCC---CceEEEEEc
Q 013083 230 GKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-----SNSDLRSLLLSMP---SRSMLVIED 301 (450)
Q Consensus 230 ~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-----~~~~L~~l~~~~~---~~sIlviDd 301 (450)
.+. ...+-|++|+|||||||||++++.||.+.|.++-.+...++. .-..++++|.-+. ..-+|||||
T Consensus 377 TK~-----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDE 451 (630)
T KOG0742|consen 377 TKK-----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDE 451 (630)
T ss_pred ccc-----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehh
Confidence 332 334568999999999999999999999999999888877774 3567889998764 466889999
Q ss_pred ccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q 013083 302 IDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASV 381 (450)
Q Consensus 302 iD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~ 381 (450)
.|.++. .|...- .+...+..|+.||-.. |-. ....++|.+||+|+++|.|+-. |+|..|+||.|..++
T Consensus 452 ADAFLc--eRnkty----mSEaqRsaLNAlLfRT-Gdq---SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEE 519 (630)
T KOG0742|consen 452 ADAFLC--ERNKTY----MSEAQRSALNALLFRT-GDQ---SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEE 519 (630)
T ss_pred hHHHHH--Hhchhh----hcHHHHHHHHHHHHHh-ccc---ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHH
Confidence 999875 332221 1234556777777543 322 3568899999999999999999 999999999999999
Q ss_pred HHHHHHHHhCc
Q 013083 382 FEQLAFNYLGI 392 (450)
Q Consensus 382 r~~l~~~~l~~ 392 (450)
|..|+..||+.
T Consensus 520 Rfkll~lYlnk 530 (630)
T KOG0742|consen 520 RFKLLNLYLNK 530 (630)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=5.9e-20 Score=159.07 Aligned_cols=123 Identities=33% Similarity=0.509 Sum_probs=100.1
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC------CchhHHHHHhcC--CC-ceEEEEEcccccccccccCccc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------SNSDLRSLLLSM--PS-RSMLVIEDIDCSITLENRDSKD 315 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------~~~~L~~l~~~~--~~-~sIlviDdiD~l~~~~~~~~~~ 315 (450)
+||+||||||||++|+++|++++.+++.+++..+. ....+..++..+ .. ++||+|||+|.+.... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~-- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---Q-- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---S--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---c--
Confidence 68999999999999999999999999999999885 345667777664 24 8999999999997622 0
Q ss_pred ccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q 013083 316 QAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 316 ~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~ 376 (450)
..........+..|++.++..... ..++++|+|||.++.++++++| |||+..|++|.
T Consensus 76 --~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 --PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp --TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred --cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 112344567789999999987653 3568999999999999999998 89999999974
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.9e-19 Score=171.78 Aligned_cols=179 Identities=21% Similarity=0.317 Sum_probs=138.0
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhh-CCCCCceeeeeCCCCCchHHHHHHHHHHcC---------CcEEEEec
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRV-GKAWKRGYLLYGPPGTGKSSLIAAMANHLK---------FDIYDLDL 275 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGTGKTsla~alA~~l~---------~~~~~l~~ 275 (450)
-|++|+-+..+|++++.+....+...+.-.+. =+.|.|-+|||||||||||+|++|+|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 37889999999999999887766543322222 267889999999999999999999999983 34677777
Q ss_pred Ccc------CCchhHHHHHhcC-------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC
Q 013083 276 TDV------QSNSDLRSLLLSM-------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC 342 (450)
Q Consensus 276 ~~~------~~~~~L~~l~~~~-------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~ 342 (450)
..+ .+..-+.++|.+. ..-..++|||++.+...+.. ..+++++.+.-+.++.+|.+||.+..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s---~~S~~EpsDaIRvVNalLTQlDrlK~-- 294 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTS---ASSRNEPSDAIRVVNALLTQLDRLKR-- 294 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHh---hhcCCCCchHHHHHHHHHHHHHHhcc--
Confidence 776 2334444555443 23446779999999764322 12233456667889999999999976
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 343 SEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 343 ~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
..+++|.+|+|-.+.+|.|+.. |-|...++++|+...+.+|++..+.
T Consensus 295 ~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 295 YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 4789999999999999999999 9999999999999999999998763
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.1e-17 Score=166.54 Aligned_cols=192 Identities=19% Similarity=0.207 Sum_probs=143.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.+|++++|.++.++.+...+...... + ...+++|||||||||||++|+++|++++.++...+...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 457889999999999999988777654332 1 12468999999999999999999999999988887777766
Q ss_pred chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-----cc---------CCCCe
Q 013083 281 NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-----SC---------CSEGR 346 (450)
Q Consensus 281 ~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-----~~---------~~~~~ 346 (450)
...+..++.....+.||+|||||.+.. ... ..|.+.|+... .. .....
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~---------------~~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSP---------------VVE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcch---------------HHH---HHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 778888888888899999999998732 011 12333333211 00 01236
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcCCCCHHHHHHHHH
Q 013083 347 IIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 347 iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~~~spa~i~~~L~ 420 (450)
.+|++||.+..++++|++ ||...++++.++.+++.++++.........+.+ .+..+++..+-+|..+...|.
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 789999999999999999 999999999999999999999887765554433 345555555666665555543
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.9e-17 Score=159.37 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=124.5
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCC---CceeeeeCCCCCchHHHHHHHHHHc-------CCcEEEEecC
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW---KRGYLLYGPPGTGKSSLIAAMANHL-------KFDIYDLDLT 276 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GppGTGKTsla~alA~~l-------~~~~~~l~~~ 276 (450)
+++++|.+++|+.|.+.+... .........|... ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~-~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWI-QINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999998876543 3334444456542 3468999999999999999999975 2367777776
Q ss_pred ccC------CchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 277 DVQ------SNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 277 ~~~------~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
++. ....++.+|..+. ++||||||+|.+.. . ......+..+..|+..|+.. ....++|+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~~----~------~~~~~~~~~i~~Ll~~~e~~----~~~~~vil 148 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLAR----G------GEKDFGKEAIDTLVKGMEDN----RNEFVLIL 148 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhcc----C------CccchHHHHHHHHHHHHhcc----CCCEEEEe
Confidence 653 2345667776654 57999999998842 0 01112345677888888764 23455566
Q ss_pred EcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHH
Q 013083 351 TTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQ 400 (450)
Q Consensus 351 TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~e 400 (450)
+++..+ .++|+|.+ ||+.+|+||.++.+++.++++.++......+.++
T Consensus 149 a~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred cCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 554332 37899999 9999999999999999999999986554444443
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=7.4e-17 Score=159.34 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=126.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCC---ceeeeeCCCCCchHHHHHHHHHHcC-------CcEEEEecCc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWK---RGYLLYGPPGTGKSSLIAAMANHLK-------FDIYDLDLTD 277 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rgiLL~GppGTGKTsla~alA~~l~-------~~~~~l~~~~ 277 (450)
++++|.+++|++|.+.+. ++..+..+...|...+ .++||+||||||||++|+++|+.+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988764 4555666777786553 2489999999999999999999862 3578887665
Q ss_pred cC------CchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 278 VQ------SNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 278 ~~------~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
+. +......++..+ .++||||||+|.+... +. ........+..|+..|+.. ..+.+||++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~--~~-------~~~~~~e~~~~L~~~me~~----~~~~~vI~a 167 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKP--DN-------ERDYGSEAIEILLQVMENQ----RDDLVVIFA 167 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccC--CC-------ccchHHHHHHHHHHHHhcC----CCCEEEEEe
Confidence 42 233445566654 4579999999987531 10 1123456677888888753 245667777
Q ss_pred cCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH
Q 013083 352 TNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF 398 (450)
Q Consensus 352 TN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 398 (450)
++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.
T Consensus 168 g~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~ 217 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLT 217 (287)
T ss_pred CCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCC
Confidence 65321 34699999 99999999999999999999999976544443
No 47
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.74 E-value=2.4e-16 Score=149.50 Aligned_cols=179 Identities=20% Similarity=0.336 Sum_probs=146.4
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CC
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KF 268 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~ 268 (450)
+...+ |....|..+++|+|.+.+|+.|++....|+.... ..++||||++|||||++++|+.+++ |.
T Consensus 13 ~~l~~--i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~p---------annvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 13 GYLEP--IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLP---------ANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred CcEEe--cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCC---------CcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 34445 6667788999999999999999999999998543 5789999999999999999999987 78
Q ss_pred cEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE
Q 013083 269 DIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII 348 (450)
Q Consensus 269 ~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii 348 (450)
.++.+.-.++..-..|...+...+.+-|||+||+. + .........|-..|||-....+++++|
T Consensus 82 RlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--F---------------e~~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 82 RLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--F---------------EEGDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred eEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--C---------------CCCcHHHHHHHHHhcCccccCCCcEEE
Confidence 99999999998888888889888899999999974 2 122345677888889888778899999
Q ss_pred EEEcCCCCCCCcccc----------C-----------CCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH
Q 013083 349 IFTTNHKEKLDPALL----------R-----------PGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF 398 (450)
Q Consensus 349 I~TTN~~~~ld~aLl----------r-----------pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 398 (450)
.+|+|+.+-+++... . ..||...|.|..|+.++..+|+++++...+.++.
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 999998654432111 1 2399999999999999999999999976655443
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=8.8e-17 Score=158.71 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=127.3
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCC---CceeeeeCCCCCchHHHHHHHHHHcC-------CcEEEEecCcc
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW---KRGYLLYGPPGTGKSSLIAAMANHLK-------FDIYDLDLTDV 278 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GppGTGKTsla~alA~~l~-------~~~~~l~~~~~ 278 (450)
.++|.+++|++|.+.... +..++.+.+.|.+. ..++||+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999886654 66777778888764 34899999999999999999999873 26888887655
Q ss_pred C------CchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 279 Q------SNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 279 ~------~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
. +...++.+|..+ .+++|||||++.+... +. ...........|+..|+.. ..+++||+++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~--~~-------~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~ 167 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRP--DN-------ERDYGQEAIEILLQVMENQ----RDDLVVILAG 167 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccC--CC-------ccchHHHHHHHHHHHHhcC----CCCEEEEEeC
Confidence 2 234456666655 4589999999987421 10 1122345677888888753 3456777776
Q ss_pred CCC--C---CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 353 NHK--E---KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 353 N~~--~---~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+.. + .++|+|.+ ||+.+|+||.++.+++..|+++++......+
T Consensus 168 ~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l 215 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRF 215 (284)
T ss_pred CcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhcccc
Confidence 543 2 35899999 9999999999999999999999997654333
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=1.8e-16 Score=167.74 Aligned_cols=165 Identities=20% Similarity=0.367 Sum_probs=127.7
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
.|.. .+.|.+|++++|.++.++.+.+++..|..+ .+ ++++|||||||||||++|+++|++++++++.
T Consensus 3 ~W~e----KyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~-~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 3 PWVE----KYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KP-KKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred Cchh----hcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4766 889999999999999999999999877742 22 5799999999999999999999999999999
Q ss_pred EecCccCCchhHHHHHhcC--------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC
Q 013083 273 LDLTDVQSNSDLRSLLLSM--------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE 344 (450)
Q Consensus 273 l~~~~~~~~~~L~~l~~~~--------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~ 344 (450)
++.++..+...+..++... ..+.||+|||+|.+.. ......+..|++.++. .
T Consensus 70 lnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~--------------~~d~~~~~aL~~~l~~------~ 129 (482)
T PRK04195 70 LNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG--------------NEDRGGARAILELIKK------A 129 (482)
T ss_pred EcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc--------------ccchhHHHHHHHHHHc------C
Confidence 9999877666666654432 2477999999998742 1122345667776663 1
Q ss_pred CeEEEEEcCCCCCCCc-cccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 345 GRIIIFTTNHKEKLDP-ALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 345 ~~iiI~TTN~~~~ld~-aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
...+|++||.+..+++ .|++ |+ ..|+|+.|+..+...+++..+..+
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 2346778898888887 5655 55 559999999999998888777544
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.1e-16 Score=159.30 Aligned_cols=182 Identities=16% Similarity=0.213 Sum_probs=131.1
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHH
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLR 285 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~ 285 (450)
+|++++|.++.++.+...+......+. ...+++||||||||||++++++|++++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~--------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQE--------ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCC--------CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 689999999999998887765543321 235799999999999999999999999998888776665666777
Q ss_pred HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc--------------ccCCCCeEEEEE
Q 013083 286 SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW--------------SCCSEGRIIIFT 351 (450)
Q Consensus 286 ~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~--------------~~~~~~~iiI~T 351 (450)
..+.....+.+|+|||||.+.. .....|++.++... .......++|++
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~------------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP------------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH------------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 7777778889999999998742 01122333333211 001123688899
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcCCCCHHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKVNVTPAEV 415 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~~~spa~i 415 (450)
||++..+++++++ ||..+++++.++.++..++++...+.....+.+ .+..++...+-.|..+
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchH
Confidence 9999999999999 999999999999999999998776544333322 2334444444444443
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.3e-16 Score=152.33 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=148.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.+|++.+|++.+|+++.-.+.....+.+ .-..+|||||||.||||||..||+++|.++...+...+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 45799999999999999988777766554433 1357999999999999999999999999999999999999
Q ss_pred chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-----ccC---------CCCe
Q 013083 281 NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-----SCC---------SEGR 346 (450)
Q Consensus 281 ~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-----~~~---------~~~~ 346 (450)
..+|..++.......|+|||||+++.+ ..-.-|-..|+.+. ... -...
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~------------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSP------------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcCh------------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 999999999999999999999999853 11111223333211 110 1234
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcCCCCHHHHHHHHHHh
Q 013083 347 IIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKVNVTPAEVAGELMKS 422 (450)
Q Consensus 347 iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~~~spa~i~~~L~~~ 422 (450)
-+|++|.+...|...|+. ||.+..++.+.+.++..+|+.+.-...+.++.+ ...+++....-||. |+..|+++
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR-IAnRLLrR 226 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR-IANRLLRR 226 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH-HHHHHHHH
Confidence 688999999999999999 999999999999999999999877666555543 34444555555664 56666653
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.5e-17 Score=162.20 Aligned_cols=194 Identities=21% Similarity=0.230 Sum_probs=128.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.++++++|++.+.-+ -..+...+... .-.+++|||||||||||+|+.||+..+.+|..++...- +
T Consensus 17 rmRP~~lde~vGQ~HLlg~-~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-g 85 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGE-GKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-G 85 (436)
T ss_pred HhCCCCHHHhcChHhhhCC-CchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-c
Confidence 3579999999999876422 11122222221 13579999999999999999999999999999987654 4
Q ss_pred chhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE-EcC
Q 013083 281 NSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF-TTN 353 (450)
Q Consensus 281 ~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~-TTN 353 (450)
.++++.++..+. .+.|||||||+++- +.....||-.++. +.+++|+ ||.
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn------------------K~QQD~lLp~vE~------G~iilIGATTE 141 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFN------------------KAQQDALLPHVEN------GTIILIGATTE 141 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcC------------------hhhhhhhhhhhcC------CeEEEEeccCC
Confidence 667888877662 47899999999882 2223456666542 4456665 454
Q ss_pred CC-CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCC-CHHHHHHHHHHhccCcHHHHH
Q 013083 354 HK-EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNV-TPAEVAGELMKSKCKYAEISL 431 (450)
Q Consensus 354 ~~-~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~-spa~i~~~L~~~~~~~~~~al 431 (450)
+| -.+.+||++ |..+ +++...+.++.++++++-+..+...+. ...+ -+.++.++|.+...+|+..+|
T Consensus 142 NPsF~ln~ALlS--R~~v-f~lk~L~~~di~~~l~ra~~~~~rgl~--------~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 142 NPSFELNPALLS--RARV-FELKPLSSEDIKKLLKRALLDEERGLG--------GQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred CCCeeecHHHhh--hhhe-eeeecCCHHHHHHHHHHHHhhhhcCCC--------cccccCCHHHHHHHHHhcCchHHHHH
Confidence 44 679999999 7754 899999999999998874432211111 0001 123445555555556666666
Q ss_pred HHHHHHHHH
Q 013083 432 QGIVKFLHA 440 (450)
Q Consensus 432 ~~l~~~l~~ 440 (450)
..|--....
T Consensus 211 N~LE~~~~~ 219 (436)
T COG2256 211 NLLELAALS 219 (436)
T ss_pred HHHHHHHHh
Confidence 555444433
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.69 E-value=1.2e-15 Score=152.77 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=116.9
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
..|.. .++|.+|++++|.++.++.+...+. . | ..+..+||+||||+|||++++++|++++.+++
T Consensus 9 ~~w~~----kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 9 FMWEQ----KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred Cccee----ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 46866 8999999999999999888777664 1 1 12456777999999999999999999999999
Q ss_pred EEecCccCCchhHHHHH----hcC---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC
Q 013083 272 DLDLTDVQSNSDLRSLL----LSM---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE 344 (450)
Q Consensus 272 ~l~~~~~~~~~~L~~l~----~~~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~ 344 (450)
.+++++ .....++..+ ... ..+.+|+|||+|.+.. . .....|...++.. +.
T Consensus 73 ~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------~---~~~~~L~~~le~~----~~ 130 (316)
T PHA02544 73 FVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------A---DAQRHLRSFMEAY----SK 130 (316)
T ss_pred EeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------H---HHHHHHHHHHHhc----CC
Confidence 999887 2233333322 222 3578999999997621 1 1223344445543 24
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 345 GRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 345 ~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
+..+|+|||.+..+++++++ |+. .+.++.|+.+++..++..++
T Consensus 131 ~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 131 NCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 56788899999999999999 886 58999999999988877654
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.9e-16 Score=161.85 Aligned_cols=154 Identities=19% Similarity=0.358 Sum_probs=115.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+...+. ... .+.++||||||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 6789999999999988776655432 221 2457999999999999999999999864
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.+.-..-+.++++.... ....||+|||+|.+. +..+..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------~~a~~~ 136 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------KEAFNA 136 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------------HHHHHH
Confidence 57777765444445566554332 245799999999873 234577
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
||..++.. ++..++|++|+.++.+++++++ |+. .++|..++.++...+++....
T Consensus 137 LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 137 LLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred HHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHH
Confidence 88888753 3557777788888899999999 885 599999999998887776654
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=7.9e-16 Score=154.53 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=113.9
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----C
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----K 267 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~ 267 (450)
.|.. .++|.+|++++|++++.+.+...+ .... ..++|||||||||||++|.++|+++ .
T Consensus 2 ~w~~----kyrP~~l~~~~g~~~~~~~L~~~~----~~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (319)
T PLN03025 2 PWVE----KYRPTKLDDIVGNEDAVSRLQVIA----RDGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYK 64 (319)
T ss_pred Chhh----hcCCCCHHHhcCcHHHHHHHHHHH----hcCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCc
Confidence 4665 889999999999998877765443 2211 2369999999999999999999997 2
Q ss_pred CcEEEEecCccCCchhHHHHHhc---C------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 268 FDIYDLDLTDVQSNSDLRSLLLS---M------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 268 ~~~~~l~~~~~~~~~~L~~l~~~---~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
..++.++.++..+...++..+.. . ....|++|||+|.+.. .....|+..++..
T Consensus 65 ~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------~aq~aL~~~lE~~ 126 (319)
T PLN03025 65 EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------GAQQALRRTMEIY 126 (319)
T ss_pred cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------HHHHHHHHHHhcc
Confidence 34667777765544455544322 1 2367999999998732 2245566666543
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 339 WSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 339 ~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
+....+|++||..+.+.++|++ |+. .++|+.|+.++....+......
T Consensus 127 ----~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 127 ----SNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ----cCCceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHH
Confidence 2345678899999999999998 774 5999999999888777765543
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=1.7e-15 Score=168.51 Aligned_cols=158 Identities=26% Similarity=0.256 Sum_probs=115.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc-------
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN------- 281 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~------- 281 (450)
++.|.+++|+.|.+.+...... +...+..+||+||||||||++|+++|+.++.+++.++++...+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4788999999998876544321 12223479999999999999999999999999999987665322
Q ss_pred --------hhHHHHHhcC-CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc----ccc-------
Q 013083 282 --------SDLRSLLLSM-PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL----WSC------- 341 (450)
Q Consensus 282 --------~~L~~l~~~~-~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~----~~~------- 341 (450)
..+.+.|..+ ..+.||+|||||.+.. . ......+.||..+|.. +..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~------------~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--S------------FRGDPASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--c------------cCCCHHHHHHHhcCHHhcCccccccCCcee
Confidence 2344445443 2455899999999853 0 0111245667666631 100
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 342 CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 342 ~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
.-.++++|+|||.++.++++|++ ||+ .|+|+.++.+++.+|+++|+
T Consensus 460 d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 460 DLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 01367889999999999999999 996 58999999999999999987
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=8.1e-16 Score=159.60 Aligned_cols=156 Identities=17% Similarity=0.313 Sum_probs=117.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+.+.+...+. .. ..+..|||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----SG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 7899999999999988887666553 11 12356999999999999999999999864
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++...-..-+.++++.... ...-|+||||+|.+- ....+.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------~~A~NA 140 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------DQSFNA 140 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------------HHHHHH
Confidence 35566654433344556554332 245699999999873 246788
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
||..|+.- +..+++|++|+.++.|.+++++ |+.. +.|..++.++....++..+..+
T Consensus 141 LLKtLEEP----p~~viFILaTte~~kI~~TI~S--RCq~-~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 141 LLKTLEEP----PAHIVFILATTEFHKIPETILS--RCQD-FIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred HHHHhhcC----CCceEEEeecCChhhccHHHHh--hhhe-eeecCCCHHHHHHHHHHHHHHc
Confidence 88888753 4678889999999999999999 9854 8999999888877777665543
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=1.6e-15 Score=145.33 Aligned_cols=205 Identities=16% Similarity=0.212 Sum_probs=125.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+....+.+||++++.+.. .+...+..- +. ......++||||||||||+|++|+|+++ +..+..+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~~------~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRKN------FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHHH------hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 456677899999976542 122222211 11 1123457999999999999999999986 345555555
Q ss_pred CccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC-C
Q 013083 276 TDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN-H 354 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN-~ 354 (450)
.... ....+.+....+..+|+||||+.+.. ....+..+..+++.+. . .+..++|.|+| .
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~-------------~~~~~~~l~~l~n~~~---~--~~~~illits~~~ 135 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG-------------NEEWELAIFDLFNRIK---E--QGKTLLLISADCS 135 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC-------------ChHHHHHHHHHHHHHH---H--cCCcEEEEeCCCC
Confidence 4321 12234555666778999999997742 1122334445555432 2 23345555555 4
Q ss_pred CCCCC---ccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCC-HHHHHHHHHHhccCcHHHH
Q 013083 355 KEKLD---PALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVT-PAEVAGELMKSKCKYAEIS 430 (450)
Q Consensus 355 ~~~ld---~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~s-pa~i~~~L~~~~~~~~~~a 430 (450)
|..++ |+|.++.+.+..++++.|+.+++.++++...... ++. +.++.++|.++..+|...+
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~---------------~l~l~~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR---------------GIELSDEVANFLLKRLDRDMHTL 200 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHhccCCHHHH
Confidence 55544 8999844556789999999999999998654211 232 5677788888777777766
Q ss_pred HHHHHHHHHHHhhhhhccC
Q 013083 431 LQGIVKFLHAKMNEQHKVT 449 (450)
Q Consensus 431 l~~l~~~l~~~~~~~~~~t 449 (450)
+..+.........+++.+|
T Consensus 201 ~~~l~~l~~~~~~~~~~it 219 (229)
T PRK06893 201 FDALDLLDKASLQAQRKLT 219 (229)
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 6555554333333344444
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=5.1e-16 Score=164.93 Aligned_cols=180 Identities=16% Similarity=0.239 Sum_probs=133.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++|+|++.+++.+.+.+..- .....|||+||+|||||++++.+|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 689999999999999998877766411 12467999999999999999999999864
Q ss_pred -----------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCch
Q 013083 269 -----------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNK 325 (450)
Q Consensus 269 -----------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~ 325 (450)
+++.++..+-..-+++++++... ....|+||||+|.+- .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------------~ 138 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------------N 138 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------------H
Confidence 55666665444456677776553 245799999999873 2
Q ss_pred hhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHH-HHHH
Q 013083 326 VTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQ-IEEM 404 (450)
Q Consensus 326 ~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~e-i~~l 404 (450)
...+.||..|+.- +++.++|++||.+++|.+.+++ |+ .++.|..++.++..+.++..+..+.....++ +..+
T Consensus 139 ~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 139 HAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred HHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578899888763 4667899999999999999999 98 4599999999998888887776554333322 3333
Q ss_pred HhcCCCCHHHHHH
Q 013083 405 LMKVNVTPAEVAG 417 (450)
Q Consensus 405 ~~~~~~spa~i~~ 417 (450)
+...+-++.+...
T Consensus 212 A~~A~Gs~RdALs 224 (700)
T PRK12323 212 AQAAQGSMRDALS 224 (700)
T ss_pred HHHcCCCHHHHHH
Confidence 4444444544433
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.3e-15 Score=161.90 Aligned_cols=158 Identities=19% Similarity=0.314 Sum_probs=122.8
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-----------
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF----------- 268 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~----------- 268 (450)
.+++|.+|++|+|++.+++.|.+.+. .. .....|||+||+|||||++++++|+.++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~----~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD----GG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 36899999999999998887766553 21 12457999999999999999999998853
Q ss_pred -------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 269 -------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 269 -------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
++++++..+-..-+++++++... ....|+||||+|.+. ....+
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------~~A~N 137 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------NHAFN 137 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------------HHHHH
Confidence 46666665444455677776553 245699999999873 23577
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
.||..|+.. ....+||++||++++|.+.|++ |+ .++.|..++.++....++..+..+.
T Consensus 138 ALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 138 AMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred HHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcC
Confidence 888888764 4568899999999999999999 99 4599999999999888888776543
No 61
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.4e-15 Score=154.92 Aligned_cols=159 Identities=21% Similarity=0.324 Sum_probs=115.4
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHH--
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLR-- 285 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~-- 285 (450)
++-.|..++|++|++.+.=-. -.|-..+.-++|+||||+|||+++++||..+|..|+.+++..+.+..+++
T Consensus 411 eDHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 455788899999988764111 11223345688999999999999999999999999999998886654442
Q ss_pred -------------HHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhc---------cccc-
Q 013083 286 -------------SLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG---------LWSC- 341 (450)
Q Consensus 286 -------------~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg---------~~~~- 341 (450)
+.+.... .+-+++|||||.+.. ..+++ --++||..+|- ...-
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~-g~qGD-------------PasALLElLDPEQNanFlDHYLdVp 549 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS-GHQGD-------------PASALLELLDPEQNANFLDHYLDVP 549 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC-CCCCC-------------hHHHHHHhcChhhccchhhhccccc
Confidence 2233332 466888999999862 11111 12445544442 1100
Q ss_pred -CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 342 -CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 342 -~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
.-..+++|+|.|..+.|+++|+. ||.+ |+++-...++...|+.+||
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhh
Confidence 11358999999999999999999 9987 9999999999999999998
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.7e-15 Score=159.79 Aligned_cols=159 Identities=21% Similarity=0.330 Sum_probs=123.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|.+.+++.+...+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~----~-------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE----R-------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 6789999999999999888777654 1 1 12468999999999999999999999864
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.++-..-+.+++++.... +.-|++|||+|.+- ....+.
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------------~~A~NA 137 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------------THSFNA 137 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------------HHHHHH
Confidence 567777765445567777776542 45699999999873 235677
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH 396 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 396 (450)
||..++.. ++...+|++|+.+..+.+.+++ |+. +++|..++.++....+...+..++..
T Consensus 138 LLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 138 LLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred HHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 88888763 3567788888889999999998 885 49999999999888888777655433
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.6e-15 Score=155.22 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=133.5
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC---
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF--- 268 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~--- 268 (450)
..|.. .++|.+|++++|++.+.+.+...+. .+ ..+.++||+||||||||++|+++|+.++.
T Consensus 9 ~~la~----kyRP~~f~dliGq~~vv~~L~~ai~---~~---------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~ 72 (507)
T PRK06645 9 IPFAR----KYRPSNFAELQGQEVLVKVLSYTIL---ND---------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred cchhh----hhCCCCHHHhcCcHHHHHHHHHHHH---cC---------CCCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 34554 7899999999999998877655432 11 12468999999999999999999999853
Q ss_pred -------------------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCccccc
Q 013083 269 -------------------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 269 -------------------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
+++.++..+-.+-.+++.++..+. ..-|++|||+|.+.
T Consensus 73 ~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------- 141 (507)
T PRK06645 73 ITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------- 141 (507)
T ss_pred cccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------
Confidence 455555544445567777766542 46799999999772
Q ss_pred CCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 318 GHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 318 ~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
...++.|+..++.. +...++|++|+.++++++++++ |+ ..++|..++.++...+++..+..++...
T Consensus 142 -------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~i 207 (507)
T PRK06645 142 -------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKT 207 (507)
T ss_pred -------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 23567788888753 4567888888889999999998 88 4599999999999988888776554433
Q ss_pred HH-HHHHHHhcCCCCHHHHHHHH
Q 013083 398 FE-QIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 398 ~~-ei~~l~~~~~~spa~i~~~L 419 (450)
.+ .++.++...+-++.++...|
T Consensus 208 e~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 208 DIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 23444444444555554443
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.7e-15 Score=150.31 Aligned_cols=178 Identities=16% Similarity=0.260 Sum_probs=124.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+.+.+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~----~-------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS----L-------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH----c-------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 6789999999999998887765543 1 1 12467999999999999999999998852
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.++-..-..+++++... ....|++|||+|.+. ....+.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------~~a~na 138 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------RHSFNA 138 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------------HHHHHH
Confidence 45555544323345566665543 135699999999772 234567
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKVN 409 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~~ 409 (450)
||..++.. +....+|++|+.++.+.+++++ |+ ..++|+.++.++...++...+..++....+ .++.++...+
T Consensus 139 LLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 139 LLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88887753 3556778888888999999998 88 459999999999998888766554433332 2333333333
Q ss_pred CCHHHH
Q 013083 410 VTPAEV 415 (450)
Q Consensus 410 ~spa~i 415 (450)
-++.++
T Consensus 212 G~~R~a 217 (363)
T PRK14961 212 GSMRDA 217 (363)
T ss_pred CCHHHH
Confidence 344443
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.63 E-value=7.3e-15 Score=152.58 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=111.8
Q ss_pred cCCCCCCcccccChHHHHH---HHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKA---IMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~---i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~ 277 (450)
..+|.+|++++|++..... +...+ .... ..++||+||||||||++|+++|+.++.+++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i----~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMI----EAGR---------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHH----HcCC---------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 6789999999999887554 44433 2211 348999999999999999999999999999998775
Q ss_pred cCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 278 VQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 278 ~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
. ....++.++... ..+.||+|||+|++.. .....|+..++. ...++|++
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------------~~q~~LL~~le~------~~iilI~a 126 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------------AQQDALLPHVED------GTITLIGA 126 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------------HHHHHHHHHhhc------CcEEEEEe
Confidence 4 334555555543 2678999999998732 234456666653 23555554
Q ss_pred c--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 352 T--NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 352 T--N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
| |....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 334689999999 88 56999999999999999887643
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.62 E-value=9.9e-15 Score=140.32 Aligned_cols=202 Identities=18% Similarity=0.184 Sum_probs=123.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~ 277 (450)
.....+|++++-.. -...+..+..+...+. .+.++||||||||||+|++++|+++. ..+..+++..
T Consensus 15 ~~~~~~fd~f~~~~--n~~a~~~l~~~~~~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGD--NDSLLAALQNALRQEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCc--cHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45556899887331 2234455554443221 35899999999999999999999864 4455555544
Q ss_pred cCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCC
Q 013083 278 VQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEK 357 (450)
Q Consensus 278 ~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ 357 (450)
... ...+++....+..+|+||||+.+.. ....+..+..+++.+-. . +...+|+.+++.|..
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~~-------------~~~~~~~lf~l~n~~~e---~-g~~~li~ts~~~p~~ 144 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIAG-------------DELWEMAIFDLYNRILE---S-GRTRLLITGDRPPRQ 144 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhcC-------------CHHHHHHHHHHHHHHHH---c-CCCeEEEeCCCChHH
Confidence 321 1222333333446899999998732 12223344455554321 1 222455555555554
Q ss_pred ---CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCC-HHHHHHHHHHhccCcHHHHH
Q 013083 358 ---LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVT-PAEVAGELMKSKCKYAEISL 431 (450)
Q Consensus 358 ---ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~s-pa~i~~~L~~~~~~~~~~al 431 (450)
+.|+|++ |+. .++++..|+.+++.++++.... ..++. +.++.++|.++..+|...++
T Consensus 145 l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~---------------~~~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 145 LNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR---------------LRGFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred cCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHhhcCCHHHHH
Confidence 5799999 885 7799999999999988875321 11333 56778888887777877666
Q ss_pred HHHHHHHHHHhhhhhccC
Q 013083 432 QGIVKFLHAKMNEQHKVT 449 (450)
Q Consensus 432 ~~l~~~l~~~~~~~~~~t 449 (450)
..|..........++.+|
T Consensus 208 ~~l~~l~~~~l~~~~~it 225 (235)
T PRK08084 208 MTLDQLDRASITAQRKLT 225 (235)
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 666654333334444444
No 67
>PRK08727 hypothetical protein; Validated
Probab=99.62 E-value=1.6e-14 Score=138.78 Aligned_cols=202 Identities=16% Similarity=0.207 Sum_probs=128.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+......+|++++..+.- ....+..... | .+...++||||+|||||+|++|+|+++ +..+..+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 344555689998866653 2222222211 1 123569999999999999999998876 566666766
Q ss_pred CccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC-C
Q 013083 276 TDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN-H 354 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN-~ 354 (450)
.+.. ..+...+....+..+|+|||++.+.. .......+..++|.+.. .+.-+|+|+| .
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~-------------~~~~~~~lf~l~n~~~~------~~~~vI~ts~~~ 136 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG-------------QREDEVALFDFHNRARA------AGITLLYTARQM 136 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC-------------ChHHHHHHHHHHHHHHH------cCCeEEEECCCC
Confidence 5532 34556666677788999999997742 11223344455555432 1233555554 5
Q ss_pred CCCC---CccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHH
Q 013083 355 KEKL---DPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEI 429 (450)
Q Consensus 355 ~~~l---d~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~ 429 (450)
|..+ +|+|++ |+ ..+++++.|+.+++.++++...... ... -+.++.++|..+..++...
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~-------------~l~-l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR-------------GLA-LDEAAIDWLLTHGERELAG 200 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc-------------CCC-CCHHHHHHHHHhCCCCHHH
Confidence 6544 799998 86 5779999999999999998643211 112 2556677788777778888
Q ss_pred HHHHHHHHHHHHhhhhhccC
Q 013083 430 SLQGIVKFLHAKMNEQHKVT 449 (450)
Q Consensus 430 al~~l~~~l~~~~~~~~~~t 449 (450)
++..|..........++.+|
T Consensus 201 ~l~~L~~l~~~~~~~~~~it 220 (233)
T PRK08727 201 LVALLDRLDRESLAAKRRVT 220 (233)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 86666655543444444444
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.1e-14 Score=151.85 Aligned_cols=159 Identities=24% Similarity=0.252 Sum_probs=118.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHH-
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRS- 286 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~- 286 (450)
.+-.|.+++|++|++++.--...+. -...-++|+||||+|||||+++||+.+|..|+.+.+..+.++++++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 3457888999999998753322211 11245779999999999999999999999999999999987766632
Q ss_pred ---H-----------HhcC-CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc----------
Q 013083 287 ---L-----------LLSM-PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC---------- 341 (450)
Q Consensus 287 ---l-----------~~~~-~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~---------- 341 (450)
. +..+ ...-+++|||||.+.. .-++ .--++||..+|-=..+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s-s~rG-------------DPaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS-SFRG-------------DPASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccC-CCCC-------------ChHHHHHhhcCHhhcCchhhccccCc
Confidence 1 2222 2456889999999853 1111 1235666666621100
Q ss_pred -CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 342 -CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 342 -~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
.-.++++|+|.|..+.++.+|+. ||.+ |+++-.+.++..+|+++||
T Consensus 462 yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 462 YDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cchhheEEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhc
Confidence 11358999999999999999999 9987 9999999999999999998
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.5e-15 Score=155.97 Aligned_cols=158 Identities=20% Similarity=0.329 Sum_probs=121.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+++.+.+.+.. . ..+..|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~----~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ----Q--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh----C--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 78999999999999998887776631 1 12457999999999999999999998853
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.++-..-+.+++++.... +.-|++|||+|.+. ....+.
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------------~~a~na 138 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------------GHSFNA 138 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------------HHHHHH
Confidence 377777665555666777776532 35699999999873 235678
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
||..|+.. ++..++|++|+.+.++.+.+++ |+ ..++|..++.++....+...+..++.
T Consensus 139 LLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 139 LLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred HHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 88888864 4567888888899999999998 88 44899999888877776666654433
No 70
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.7e-15 Score=153.69 Aligned_cols=193 Identities=16% Similarity=0.233 Sum_probs=137.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEecCccC--Cc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLDLTDVQ--SN 281 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~~~~~~--~~ 281 (450)
.+++..+..|++..++...+ .....++||+||+|||||.|++++++++. +++..++|+.+. .-
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 66777778888776644333 22246899999999999999999999983 567788999885 33
Q ss_pred hhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 282 SDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 282 ~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
+.+++.+... ..|+||++||+||++... +.+++..+.....+..+|+.+-......+..+.+|+|.+..
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s-----~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~ 551 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS-----SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL 551 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC-----cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh
Confidence 4555554443 379999999999998511 11122233334456677766544444434556788999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc-CCCcHHHHHHHHhcC-CCCHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS-HHHLFEQIEEMLMKV-NVTPAEVA 416 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~-~~~l~~ei~~l~~~~-~~spa~i~ 416 (450)
..++|-|..|++|+.++.+|.|...+|.+|+.+.+... ....+..++-+..++ |+.+-|+.
T Consensus 552 qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 552 QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH
Confidence 99999999999999999999999999999999988644 233345555554443 67777763
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.2e-14 Score=152.30 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=123.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc--------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-------------- 266 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-------------- 266 (450)
.++|.+|++++|++.+.+.+.+.+. . | ..+.++||+|||||||||+|+.+|+.+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~-------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----L-------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 6789999999999988876654432 1 1 124689999999999999999999865
Q ss_pred ----------CCcEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 267 ----------KFDIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 267 ----------~~~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
..++++++.++-.+-++++.++.... ..-|++|||+|.+. ...++.
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------~~A~Na 135 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------NSAFNA 135 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------------HHHHHH
Confidence 24678888876666677887766542 45699999999772 235788
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
||..|+.. ++..++|++|+.++++.+.+++ |+.. ++|..++.++....+...+..++..+
T Consensus 136 LLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc~~-~~f~~l~~~el~~~L~~ia~~Egi~i 195 (491)
T PRK14964 136 LLKTLEEP----APHVKFILATTEVKKIPVTIIS--RCQR-FDLQKIPTDKLVEHLVDIAKKENIEH 195 (491)
T ss_pred HHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hhee-eecccccHHHHHHHHHHHHHHcCCCC
Confidence 89988864 4567888888999999999999 8854 99999999998888887765554333
No 72
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=133.93 Aligned_cols=173 Identities=20% Similarity=0.334 Sum_probs=143.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
++-.+|..+.+|+|.+.+|+.+++....|+.... ..++||||..|||||||++|+-+++ +..+++|+-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~p---------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLP---------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCc---------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 5667788999999999999999999999998533 4789999999999999999999988 678999999
Q ss_pred CccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 276 TDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
.++.+-..|..++...+.+-|||+||+-- .........|-..+||-....+.+++|.+|+|+.
T Consensus 122 ~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF-----------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 122 EDLATLPDLVELLRARPEKFILFCDDLSF-----------------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHhhHHHHHHHHhcCCceEEEEecCCCC-----------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 99988889999999999999999999831 2233456777888898888788999999999987
Q ss_pred CCCCccc--------------------cCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 356 EKLDPAL--------------------LRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 356 ~~ld~aL--------------------lrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+-|+... -=..||...+.|+.|+.++...|+.+|........
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6554211 11349999999999999999999999986654444
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=1.6e-14 Score=146.62 Aligned_cols=181 Identities=18% Similarity=0.311 Sum_probs=127.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
..+|.+|++++|.+..++.+...+.. | ..+..+|||||||+|||++++++|+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 67899999999999998888776631 1 1246899999999999999999999873
Q ss_pred -----------CcEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 268 -----------FDIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 268 -----------~~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.+++.++.........+++++..+. .+-|++|||+|.+. ....+.
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------~~~~~~ 136 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------KSAFNA 136 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------------HHHHHH
Confidence 2355555543333345566655432 45699999998762 134677
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH-HHHHHHHhcCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF-EQIEEMLMKVN 409 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~ei~~l~~~~~ 409 (450)
|+..++.. +...++|++|++++.+.+++.+ |+. .++++.|+..+...++..++...+..+. +.++.+++..+
T Consensus 137 Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 137 LLKTLEEP----PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88887653 4567788888999999999998 874 5899999999999988887765544443 33344444444
Q ss_pred CCHHHHHHH
Q 013083 410 VTPAEVAGE 418 (450)
Q Consensus 410 ~spa~i~~~ 418 (450)
-++..+...
T Consensus 210 g~~~~a~~~ 218 (355)
T TIGR02397 210 GSLRDALSL 218 (355)
T ss_pred CChHHHHHH
Confidence 444444333
No 74
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.59 E-value=1.2e-14 Score=140.46 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=111.9
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC----
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF---- 268 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~---- 268 (450)
.|.. .+.|.+|++++|++.+.+.+.+.+.. .. -..||||||||||||+.|.++|.+++-
T Consensus 25 swte----KYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~ 87 (346)
T KOG0989|consen 25 SWTE----KYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLF 87 (346)
T ss_pred chHH----HhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCcccc
Confidence 5766 89999999999999999888887754 11 247999999999999999999999864
Q ss_pred --cEEEEecCccCCchhH-------HHHHhcC----C---C-ceEEEEEcccccccccccCcccccCCCCCCchhhHHhH
Q 013083 269 --DIYDLDLTDVQSNSDL-------RSLLLSM----P---S-RSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGL 331 (450)
Q Consensus 269 --~~~~l~~~~~~~~~~L-------~~l~~~~----~---~-~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~L 331 (450)
.+.+++.++...-+-. .++.... . . .-|++|||.|.+. +...+.|
T Consensus 88 ~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------------sdaq~aL 149 (346)
T KOG0989|consen 88 PCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------------SDAQAAL 149 (346)
T ss_pred ccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh------------------HHHHHHH
Confidence 2344455544322111 1111111 1 1 2599999999873 3567788
Q ss_pred HHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 332 LNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 332 L~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
.+.|+.. .....+|+.||..++|.+.+.+ |+.. +.|+....+.....++...
T Consensus 150 rr~mE~~----s~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 150 RRTMEDF----SRTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred HHHHhcc----ccceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHH
Confidence 8888874 3567899999999999999999 9866 7777766655444444433
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.1e-14 Score=154.52 Aligned_cols=156 Identities=20% Similarity=0.315 Sum_probs=120.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+.+.+. .. ..+..|||+||+|||||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~----~~--------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALD----LG--------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 6789999999999998887765553 11 12457999999999999999999999854
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.++-..-+.+++++.... ..-|++|||+|.+- ....+.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------------~~a~NA 138 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------------RHSFNA 138 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------------HHHHHH
Confidence 456666554333456676655432 35699999999873 346788
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
||..|+.- ++..++|++|+.+++|.+.+++ |+ .+++|..++.++....+...+..+
T Consensus 139 LLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred HHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 99988863 4567788888899999999999 87 669999999999888888777443
No 76
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=4.2e-14 Score=134.45 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=102.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
.....+.+|++++. +..+.+++.+..+... ..+++++|+||||||||++++++++++ +.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 6 VGLPDDPTFDNFYA--GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCchhhcCcCc--CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 34556678999883 2334555555555432 124689999999999999999999987 467888988
Q ss_pred CccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC-C
Q 013083 276 TDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN-H 354 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN-~ 354 (450)
+.+.. .....+....+..+|+|||+|.+.. .......+..+++.+.. .+. .+|+|++ .
T Consensus 75 ~~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~-------------~~~~~~~L~~~l~~~~~-----~~~-~iIits~~~ 133 (226)
T TIGR03420 75 AELAQ--ADPEVLEGLEQADLVCLDDVEAIAG-------------QPEWQEALFHLYNRVRE-----AGG-RLLIAGRAA 133 (226)
T ss_pred HHHHH--hHHHHHhhcccCCEEEEeChhhhcC-------------ChHHHHHHHHHHHHHHH-----cCC-eEEEECCCC
Confidence 87743 2234444455667999999997732 11112334444443322 123 3455555 4
Q ss_pred CCCCC---ccccCCCcc--eeEEEeCCCCHHHHHHHHHHHh
Q 013083 355 KEKLD---PALLRPGRM--DMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 355 ~~~ld---~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l 390 (450)
+..++ +.|.+ |+ ..+|.+|.|+.+++..+++.+.
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 43332 67777 66 4789999999999998887654
No 77
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.4e-14 Score=152.39 Aligned_cols=158 Identities=16% Similarity=0.283 Sum_probs=121.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
..+|.+|++++|++.+.+.+.+.+.. . ..+..||||||+|||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ----G--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 56899999999999988887776642 1 1246899999999999999999999874
Q ss_pred -----------CcEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 268 -----------FDIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 268 -----------~~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.+++.++.++-..-+.++.+...+. ..-|++|||+|.+. ....+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------~~a~na 138 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------TGAFNA 138 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------HHHHHH
Confidence 4567777655444556777665532 45699999999773 235778
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
||..++.. +...++|++|+.++++.+++++ |+.. +.|+.++..+....+...+...+.
T Consensus 139 LLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~~-~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 139 LLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQR-FDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred HHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--HheE-EecCCCCHHHHHHHHHHHHHHcCC
Confidence 88888764 4567888888889999999998 8864 899999999988888777654443
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3e-14 Score=155.89 Aligned_cols=156 Identities=20% Similarity=0.311 Sum_probs=116.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc-----------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD----------- 269 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~----------- 269 (450)
.++|.+|++++|.+.+++.+.+.+. .. ..+..|||+||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 6789999999999998887665543 21 124678999999999999999999998642
Q ss_pred -------------EEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 270 -------------IYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 270 -------------~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
++.++..+...-..++++..... ..-|+||||+|.+- ....+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------~eAqNA 138 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------RSSFNA 138 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------------HHHHHH
Confidence 23344432223345666554332 35699999999872 356788
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
||..|+.. ++..++|++|+.+.+|.+.|++ |+ .+++|..++.++....+.+.+..+
T Consensus 139 LLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred HHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 99988863 4566778888889999999999 88 559999999999888888776544
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.5e-14 Score=148.67 Aligned_cols=158 Identities=22% Similarity=0.374 Sum_probs=118.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+++.+...+.. . ..+..+||||||||||||+|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~----~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ----G--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 57899999999999988877666542 1 12456899999999999999999998842
Q ss_pred -----------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhH
Q 013083 269 -----------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGL 331 (450)
Q Consensus 269 -----------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~L 331 (450)
+++.++.++...-..++.+...+ ..+.||||||+|.+. ...++.|
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------------~~a~naL 136 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------------KSAFNAL 136 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------------HHHHHHH
Confidence 36666655433344555553322 256799999998652 2457788
Q ss_pred HHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 332 LNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 332 L~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
+..++.. +...++|++|+.++.+.+++.+ |+. +++|..++.++....+...+..++.
T Consensus 137 Lk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 137 LKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred HHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 8888753 3567888889999999999998 875 5999999999988888877655433
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.8e-14 Score=153.33 Aligned_cols=180 Identities=18% Similarity=0.259 Sum_probs=129.6
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-----------
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF----------- 268 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~----------- 268 (450)
..++|.+|++|+|.+.+++.+.+.+.. . ..+.+|||+||+|||||++|+++|+.++.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~----~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE----G--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 367999999999999998887776542 1 22468999999999999999999998743
Q ss_pred -------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 269 -------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 269 -------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
+++.++..+-...+.+++++... .+..|+||||+|.+. ....+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------~~A~N 137 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------KSAFN 137 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------------HHHHH
Confidence 34555554444456677777643 245799999998762 23567
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcC
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKV 408 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~ 408 (450)
.||..|+.. ++.+++|++|+.+.++.+.+++ |+ ..+.|+.++.++....++..+..++..+.+ .+..+++..
T Consensus 138 ALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 138 AMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 888888763 3567888899999999999987 88 458899999999888888877665444332 233333333
Q ss_pred CCCHHHHH
Q 013083 409 NVTPAEVA 416 (450)
Q Consensus 409 ~~spa~i~ 416 (450)
+-+..++.
T Consensus 211 ~GslRdAl 218 (709)
T PRK08691 211 AGSMRDAL 218 (709)
T ss_pred CCCHHHHH
Confidence 34444443
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.57 E-value=9.4e-14 Score=132.58 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=118.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
.+...|.+|+++++... +.+...+..+.. +....++++|+||||||||+|++++++++ +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 44566778999873321 223344444332 12224689999999999999999999986 668888887
Q ss_pred CccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 276 TDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
..... .+.......+|+|||+|.+.. ..+..+..+++.+. . ....++|+|++.+
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~~---------------~~~~~L~~~~~~~~---~--~~~~~vl~~~~~~ 132 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLDD---------------AQQIALFNLFNRVR---A--HGQGALLVAGPAA 132 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcCc---------------hHHHHHHHHHHHHH---H--cCCcEEEEeCCCC
Confidence 76531 123334577999999997621 12233334444332 2 1233455565543
Q ss_pred C---CCCccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHHH
Q 013083 356 E---KLDPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEIS 430 (450)
Q Consensus 356 ~---~ld~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~a 430 (450)
. .+.+.|.+ |+ ...++++.|+..++..++..+.... ...+++ ++.+.|.++..+++...
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~-------------~v~l~~-~al~~L~~~~~gn~~~l 196 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAER-------------GLQLAD-EVPDYLLTHFRRDMPSL 196 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHc-------------CCCCCH-HHHHHHHHhccCCHHHH
Confidence 2 35577776 76 4789999999988777666443221 123333 45566666555666665
Q ss_pred HHHHHHHHHHHhhhhhccC
Q 013083 431 LQGIVKFLHAKMNEQHKVT 449 (450)
Q Consensus 431 l~~l~~~l~~~~~~~~~~t 449 (450)
...|..........++.+|
T Consensus 197 ~~~l~~l~~~~~~~~~~i~ 215 (227)
T PRK08903 197 MALLDALDRYSLEQKRPVT 215 (227)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 5555554444444444443
No 82
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=6.9e-14 Score=134.38 Aligned_cols=206 Identities=16% Similarity=0.217 Sum_probs=127.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCC-CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW-KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
+......+|++++... ....+..+..+..... .| .++++||||+|||||+|++|+|+++ +..++.++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEADA-------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhccc-------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4455567899987332 2445555555433211 12 3678999999999999999999875 56777787
Q ss_pred cCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 275 LTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 275 ~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
..++... ...++....+..+|+|||++.+.. ....+..+..++|.+ .. .+..+|+.++..
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~-------------~~~~~~~Lf~l~n~~---~~--~g~~ilits~~~ 140 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAG-------------KADWEEALFHLFNRL---RD--SGRRLLLAASKS 140 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcC-------------ChHHHHHHHHHHHHH---Hh--cCCEEEEeCCCC
Confidence 7665321 223334444557899999997632 112233345555543 22 133455544444
Q ss_pred CCC---CCccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHH
Q 013083 355 KEK---LDPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEI 429 (450)
Q Consensus 355 ~~~---ld~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~ 429 (450)
|.. ..|+|++ |+ ...+.+..|+.+.+..+++...... ...+ +.++.++|.++..+|...
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~-------------~~~l-~~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRR-------------GLHL-TDEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHc-------------CCCC-CHHHHHHHHHhcCCCHHH
Confidence 533 4689999 87 4778899999999999888533111 1222 457888998887777776
Q ss_pred HHHHHHHHHHHHhhhhhccC
Q 013083 430 SLQGIVKFLHAKMNEQHKVT 449 (450)
Q Consensus 430 al~~l~~~l~~~~~~~~~~t 449 (450)
++..|..........++.+|
T Consensus 205 l~~~l~~l~~~~l~~~~~it 224 (234)
T PRK05642 205 LFDLLERLDQASLQAQRKLT 224 (234)
T ss_pred HHHHHHHHHHHHHHcCCcCC
Confidence 66555555444434445554
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.9e-14 Score=153.17 Aligned_cols=160 Identities=16% Similarity=0.276 Sum_probs=120.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+.+.+.+.+. .. ..+..|||+||+|||||++++++|+.++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----QQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 7899999999999888777666543 21 12467999999999999999999999853
Q ss_pred -----------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCch
Q 013083 269 -----------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNK 325 (450)
Q Consensus 269 -----------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~ 325 (450)
+++.++..+-..-+.+++++.... ..-|++|||+|.+. .
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------------~ 138 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------------N 138 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------------H
Confidence 355665544334456777766532 34699999999873 2
Q ss_pred hhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 326 VTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 326 ~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
...+.||..++.. ++..++|++|+.++++.+.+++ |+ .+++|..++.++....+...+..++...
T Consensus 139 ~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~i 203 (618)
T PRK14951 139 TAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPA 203 (618)
T ss_pred HHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3577888887753 4567788888889999999998 88 5599999999998888887765554433
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.4e-14 Score=152.33 Aligned_cols=156 Identities=18% Similarity=0.329 Sum_probs=117.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
.++|.+|++++|.+.+++.+.+.+. . | ..+++|||+||||+|||++|+++|+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~----~-------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL----N-------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 7899999999999998887766542 1 1 1246899999999999999999999874
Q ss_pred -----------CcEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 268 -----------FDIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 268 -----------~~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.+++.++.++...-+.++.+..... ..-|++|||+|.+- ....+.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------~~A~Na 138 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------TSAWNA 138 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------------HHHHHH
Confidence 2556666544334455666654322 45699999999772 124577
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
||..|+.. ++..++|++|+.++.+.+++++ |+. +++|+.++..+....+...+..+
T Consensus 139 LLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 139 LLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred HHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence 88888763 4567888888999999999999 886 49999999999888777766444
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3e-14 Score=151.71 Aligned_cols=157 Identities=18% Similarity=0.329 Sum_probs=118.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+.+.+.. . ..+..|||+||||+|||++|+++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~----~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ----Q--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc----C--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 67899999999999998877766542 1 12467999999999999999999999854
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.+.-..-+.+++++..+. ...|++|||+|.+. ....+.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------~~a~na 138 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------KSAFNA 138 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------------HHHHHH
Confidence 355565543334456777665432 35699999999773 235678
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..++.. ++..++|++|+.++.+.+.+++ |+ .+++|..++.++....+...+..++
T Consensus 139 LLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 139 MLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred HHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 89888763 4567888888889999988988 88 4599999999998887777765443
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.3e-14 Score=156.56 Aligned_cols=158 Identities=19% Similarity=0.288 Sum_probs=119.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
.++|.+|++|+|++.+++.|...+.. . .....|||+||+|||||++++++|+.++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~----~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS----G--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh----C--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 68999999999999988887766541 1 1235799999999999999999999985
Q ss_pred -------------CcEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhH
Q 013083 268 -------------FDIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTL 328 (450)
Q Consensus 268 -------------~~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l 328 (450)
.+++.++..+...-+.++++.... ...-|+||||+|.+- ....
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------------~~a~ 137 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------------PQGF 137 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------------HHHH
Confidence 245566554433445566553321 246699999999883 2457
Q ss_pred HhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 329 SGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 329 ~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
+.||+.|+.. +...++|++|+.+++|-+.|++ |+ .+++|..++.++...++...+..++.
T Consensus 138 NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 138 NALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred HHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 7899988874 4567888888999999999998 87 45899999999988888887754433
No 87
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.2e-14 Score=151.35 Aligned_cols=160 Identities=21% Similarity=0.321 Sum_probs=120.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
.++|.+|++++|++.+++.+...+. .. ..+..|||+||+||||||+|+++|+.++
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----AG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 5789999999999988888766554 21 1245799999999999999999999875
Q ss_pred -------------CcEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhH
Q 013083 268 -------------FDIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTL 328 (450)
Q Consensus 268 -------------~~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l 328 (450)
.+++.++.++...-+.++++.... ...-|++|||+|.+- ....
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------------~~A~ 135 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------------TAGF 135 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------------HHHH
Confidence 246666665544455566554332 245699999999873 2367
Q ss_pred HhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 329 SGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 329 ~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+.||..|+.. ++..++|++|+.++++.+++++ |+ .+++|..++.++....+...+..++..+
T Consensus 136 NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i 197 (584)
T PRK14952 136 NALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVV 197 (584)
T ss_pred HHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 7889888864 4678888888999999999999 86 4599999999988888887776554433
No 88
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=141.77 Aligned_cols=160 Identities=18% Similarity=0.345 Sum_probs=116.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|.+..++.+.+.+.. . ..+.++|||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~----~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN----N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 68999999999999988777666542 1 12468999999999999999999998743
Q ss_pred cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC
Q 013083 269 DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC 342 (450)
Q Consensus 269 ~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~ 342 (450)
.+++++.......+.++.++..+ ..+.||+|||+|.+.. ..++.|+..++..
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------------~~~~~ll~~le~~---- 135 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------------AAFNAFLKTLEEP---- 135 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------------HHHHHHHHHHhCC----
Confidence 33444433333345677766543 2457999999987631 2467788777653
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 343 SEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 343 ~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+...++|++|+.+..+.+++.+ |+. .++++.++.++...++...+...+..+
T Consensus 136 ~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 136 PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 3456778888888999999998 764 489999999998887777665444333
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.6e-14 Score=148.16 Aligned_cols=157 Identities=18% Similarity=0.299 Sum_probs=116.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|.+.+++.+...+. .. ..+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~----~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE----TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 6789999999999999887766553 11 12457999999999999999999998753
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++...-..-+.++.++... ...-|++|||+|.+- ....+.
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------------~~a~na 138 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------------KQSFNA 138 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------------HHHHHH
Confidence 55566653333334555554432 246699999999872 235678
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..|+.. ++..++|++|+.+..+.+++++ |+ ..++|..++.++....+...+..++
T Consensus 139 LLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 139 LLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred HHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 88888863 4567777777888999988988 88 5599999999998877777665443
No 90
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=1.1e-13 Score=139.30 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=108.8
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-----
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK----- 267 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~----- 267 (450)
.|.. .+.|.+|++++|.+++++.+...+. .+. ..++|||||||||||++|+++|+++.
T Consensus 4 ~w~~----ky~P~~~~~~~g~~~~~~~L~~~~~----~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~ 66 (337)
T PRK12402 4 LWTE----KYRPALLEDILGQDEVVERLSRAVD----SPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred chHH----hhCCCcHHHhcCCHHHHHHHHHHHh----CCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccc
Confidence 5766 7899999999999888777666543 211 13699999999999999999999983
Q ss_pred CcEEEEecCccCC--------------------------chhHHHHHhc-------CCCceEEEEEcccccccccccCcc
Q 013083 268 FDIYDLDLTDVQS--------------------------NSDLRSLLLS-------MPSRSMLVIEDIDCSITLENRDSK 314 (450)
Q Consensus 268 ~~~~~l~~~~~~~--------------------------~~~L~~l~~~-------~~~~sIlviDdiD~l~~~~~~~~~ 314 (450)
.++..+++.++.. ...++.++.. ...+.+|+|||+|.+..
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------- 139 (337)
T PRK12402 67 NNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------- 139 (337)
T ss_pred cceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------
Confidence 3466777665310 1112222211 12456999999997621
Q ss_pred cccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 315 DQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 315 ~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
.....|+..++.. +....+|++|+.+..+.++|.+ |+ ..++++.|+.++...++...+...+
T Consensus 140 -----------~~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 140 -----------DAQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred -----------HHHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 1233455555543 2234466677777788888888 76 4589999999999888888765543
No 91
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.9e-14 Score=148.77 Aligned_cols=172 Identities=17% Similarity=0.248 Sum_probs=126.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC------CchhHHHHHhcCC--CceEEEEEccccccccc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------SNSDLRSLLLSMP--SRSMLVIEDIDCSITLE 309 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~ 309 (450)
++.....+||+|+||||||++++++|.++|.+++.++|.++. ++..+...|.++. .|+||++-++|.+..
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i-- 504 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI-- 504 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--
Confidence 344455799999999999999999999999999999999883 4567777887765 799999999998863
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 389 (450)
+++. ++.-.-...+..++. +|-.. ......|+|+||+..+.+++.+++ .|-..|.+|.|++++|.++++.|
T Consensus 505 d~dg-----ged~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y 575 (953)
T KOG0736|consen 505 DQDG-----GEDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWY 575 (953)
T ss_pred cCCC-----chhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHH
Confidence 1111 111111222333333 22222 224678999999999999999999 89999999999999999999999
Q ss_pred hCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 390 LGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 390 l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+......-......++... +++.+++.. |+.
T Consensus 576 ~~~~~~n~~v~~k~~a~~t~gfs~~~L~~-l~~ 607 (953)
T KOG0736|consen 576 LNHLPLNQDVNLKQLARKTSGFSFGDLEA-LVA 607 (953)
T ss_pred HhccccchHHHHHHHHHhcCCCCHHHHHH-Hhc
Confidence 9765433334445566554 788888744 444
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=5.6e-14 Score=150.01 Aligned_cols=171 Identities=21% Similarity=0.278 Sum_probs=116.8
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc------
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL------ 266 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l------ 266 (450)
.|.. ..+|.+|++++|.+...+.+...+ .. +.+.++||+||||||||++|+++++++
T Consensus 54 ~~~~----~~rp~~f~~iiGqs~~i~~l~~al----~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s 116 (531)
T TIGR02902 54 PLSE----KTRPKSFDEIIGQEEGIKALKAAL----CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPAS 116 (531)
T ss_pred hHHH----hhCcCCHHHeeCcHHHHHHHHHHH----hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 5665 679999999999998887776532 11 124689999999999999999998753
Q ss_pred ----CCcEEEEecCccC-CchhHH-HHHh--------------------------cCCCceEEEEEcccccccccccCcc
Q 013083 267 ----KFDIYDLDLTDVQ-SNSDLR-SLLL--------------------------SMPSRSMLVIEDIDCSITLENRDSK 314 (450)
Q Consensus 267 ----~~~~~~l~~~~~~-~~~~L~-~l~~--------------------------~~~~~sIlviDdiD~l~~~~~~~~~ 314 (450)
+.+++.++|+... ++..+. .++. ....+++|+|||||.+-.
T Consensus 117 ~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~------- 189 (531)
T TIGR02902 117 PFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP------- 189 (531)
T ss_pred CcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-------
Confidence 3678999987421 111111 1110 012457999999998732
Q ss_pred cccCCCCCCchhhHHhHHHHhhcc--------cc-----------------cCCCCeEEEEEcCCCCCCCccccCCCcce
Q 013083 315 DQAGHNQGDNKVTLSGLLNFIDGL--------WS-----------------CCSEGRIIIFTTNHKEKLDPALLRPGRMD 369 (450)
Q Consensus 315 ~~~~~~~~~~~~~l~~LL~~ldg~--------~~-----------------~~~~~~iiI~TTN~~~~ld~aLlrpgR~d 369 (450)
...+.||..|+.- .. ...+-++|++||+.++.++|++++ |+.
T Consensus 190 -----------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~ 256 (531)
T TIGR02902 190 -----------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV 256 (531)
T ss_pred -----------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh
Confidence 2445555555321 00 011236777888999999999999 885
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHH
Q 013083 370 MHIHMSYCTASVFEQLAFNYLGISHHHLFEQI 401 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei 401 (450)
.|.|+.++.+++.+++++.+......+.++.
T Consensus 257 -~I~f~pL~~eei~~Il~~~a~k~~i~is~~a 287 (531)
T TIGR02902 257 -EIFFRPLLDEEIKEIAKNAAEKIGINLEKHA 287 (531)
T ss_pred -eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence 5899999999999999988765444443333
No 93
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=6.1e-14 Score=151.95 Aligned_cols=156 Identities=19% Similarity=0.335 Sum_probs=116.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+.+.+...+.. . ..+..||||||||||||++|+++|+.+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~----~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS----N--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 78999999999999998887776641 1 12468999999999999999999998743
Q ss_pred ---------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH
Q 013083 269 ---------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN 333 (450)
Q Consensus 269 ---------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 333 (450)
+++.++...-.+-..++.+...+. ..-|++|||+|.+- ....+.||.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------------~~A~NALLK 140 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------------KSAFNALLK 140 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------------HHHHHHHHH
Confidence 233344322223344666654432 45699999999873 235778888
Q ss_pred HhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 334 FIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 334 ~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
.|+.. ++..++|++|+.++.|.+++++ |+. +++|..++.++....+...+..+
T Consensus 141 tLEEP----P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 141 TLEEP----PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred HhhcC----CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHc
Confidence 88864 4567888888999999999999 885 69999999999887777655443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.9e-13 Score=140.49 Aligned_cols=155 Identities=16% Similarity=0.255 Sum_probs=113.3
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc----------------
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD---------------- 269 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~---------------- 269 (450)
.|++++|++.+++.+.+.+..... .+...+.+.+.+|||+||||+|||++|+++|+.+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998888764433 2333455567899999999999999999999976432
Q ss_pred -------EEEEecCcc-CCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHh
Q 013083 270 -------IYDLDLTDV-QSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFI 335 (450)
Q Consensus 270 -------~~~l~~~~~-~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 335 (450)
++.+..... ..-+.+++++..+. ...|++|||+|.+.. ...+.||..|
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------------~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------------RAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------------HHHHHHHHHh
Confidence 333332211 13345677665432 356999999998832 2457788888
Q ss_pred hcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q 013083 336 DGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 336 dg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
+.. +.+.++|++|++++.+.|++++ |+ ..+.|+.|+.++..+.+..
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 763 3556777777779999999999 88 4699999999998777764
No 95
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=9.8e-14 Score=135.55 Aligned_cols=146 Identities=23% Similarity=0.238 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHH---------
Q 013083 215 ELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLR--------- 285 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~--------- 285 (450)
+..+.+.+.+..++.. .+.+||+||||||||++|+++|+.++.+++.++|..-....++-
T Consensus 5 ~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred HHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchh
Confidence 3445566666656553 36899999999999999999999999999999887643222210
Q ss_pred ------------------------HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-c
Q 013083 286 ------------------------SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-S 340 (450)
Q Consensus 286 ------------------------~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~ 340 (450)
.++.....+.+|+||||+.+- ..+.+.|+..|+.-. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~------------------~~~q~~Ll~~Le~~~~~ 135 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSK------------------PETNNVLLSVFEEGVLE 135 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCC------------------HHHHHHHHHHhcCCeEE
Confidence 011222356799999999762 235666777665321 0
Q ss_pred c-----------CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 341 C-----------CSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 341 ~-----------~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
- ...+..||+|+|... .++++|++ || ..+.+++|+.++..+|++...+.
T Consensus 136 i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 136 LPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred ccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 0 012456899999763 56899999 98 66999999999999999887654
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=8.5e-14 Score=148.80 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=115.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+++.+.+.+. .. .....|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----EN--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 6899999999999988777766553 21 11358999999999999999999999864
Q ss_pred ------------cEEEEecCccCCchhHHHHHhc---C---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLS---M---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~---~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++...-..-+.++.+... . ....||||||+|.+- ....+.
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------~~a~na 138 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------REAFNA 138 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------------HHHHHH
Confidence 2566655432233444443322 2 246799999999872 234678
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..|+.. ....++|++||.++.+.+.|++ |+. +++|+.++.++....+...+..+.
T Consensus 139 LLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 139 LLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred HHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcC
Confidence 88888763 3567888999999999999998 885 589999999998888877664443
No 97
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=7.8e-14 Score=150.16 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=119.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|.+.+++.+.+.+.. . ..+..||||||+|+|||++++++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT----G--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 67899999999999998888776642 1 12468999999999999999999999852
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++..+...-++++.+..... ..-|++|||+|.+. ....+.
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------~~a~na 138 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------TNAFNA 138 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------------HHHHHH
Confidence 355666544334456666654432 35699999999773 235678
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..|+.. ++..++|++|+.+++|.+.+++ |+. +++|..++.++....+...+..++
T Consensus 139 LLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 139 LLKTLEEP----PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred HHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhC
Confidence 89888864 4567888899999999999998 885 599999999888877776665443
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=3.3e-14 Score=157.42 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=116.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~ 271 (450)
-.|..++.++|.++....+++.|. ++ -+.++||+||||||||++++++|+.+ +..++
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~----~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLC----RR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHh----cC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 367789999999988887765552 21 25689999999999999999999987 78899
Q ss_pred EEecCccCC--------chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc
Q 013083 272 DLDLTDVQS--------NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC 341 (450)
Q Consensus 272 ~l~~~~~~~--------~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~ 341 (450)
.++++.+.. +..+++++..+. .++||||||||.+...... ........+-|+..+.
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~---------~~~~~~~~~~L~~~l~----- 308 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT---------SGGSMDASNLLKPALS----- 308 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---------CCccHHHHHHHHHHHh-----
Confidence 999777632 357888887653 5899999999999752110 0111111222333332
Q ss_pred CCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 342 CSEGRIIIFTTNHK-----EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 342 ~~~~~iiI~TTN~~-----~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+...+|++||.. -..|+||.| ||. .|+++.|+.+++.+|++....
T Consensus 309 -~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 309 -SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred -CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 2567788888864 357999999 997 599999999999999986554
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.6e-13 Score=141.03 Aligned_cols=156 Identities=16% Similarity=0.247 Sum_probs=114.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|.+.+++.+.+.+. .. ..+..+|||||||+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~----~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR----FN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 5789999999999988887666553 11 12468999999999999999999998732
Q ss_pred -------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 269 -------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 269 -------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
+++.++.....+-+.++.+.... ..+.|++|||+|.+.. ...+
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------------~~~n 139 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------------EAFN 139 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------------HHHH
Confidence 35555543322334454433221 3578999999997731 2457
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
.|+..|+.. ++..++|++||.+.++.+++++ |+.. ++|+.++.++....+...+..+
T Consensus 140 ~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~~-v~f~~l~~~el~~~L~~~~~~e 196 (451)
T PRK06305 140 SLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQK-MHLKRIPEETIIDKLALIAKQE 196 (451)
T ss_pred HHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hceE-EeCCCCCHHHHHHHHHHHHHHc
Confidence 788888763 3567788888989999999999 8854 9999999999887777665443
No 100
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=1.4e-13 Score=144.52 Aligned_cols=192 Identities=16% Similarity=0.234 Sum_probs=118.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEec
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDL 275 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~ 275 (450)
+.+..+|++++..+.-+ .....+..+...+ |.. .++++||||||||||+|++++|+++ +..++.+++
T Consensus 115 l~~~~tfd~fv~g~~n~-~a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNR-LAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcH-HHHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 44556899965433322 2334444443332 222 2579999999999999999999998 566888887
Q ss_pred CccCC-------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE
Q 013083 276 TDVQS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII 348 (450)
Q Consensus 276 ~~~~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii 348 (450)
.++.. ......+.....+..+|+|||||.+.. . ..+...|+..++.+... +..+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~-------------~---~~~~~~l~~~~n~l~~~--~~~ii 248 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG-------------K---ERTQEEFFHTFNALHEA--GKQIV 248 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC-------------C---HHHHHHHHHHHHHHHHC--CCcEE
Confidence 76521 111223333445678999999998742 0 11223444444444332 23344
Q ss_pred EEEcCCCCC---CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHH-HHhcCCCCHHHHHHHHH
Q 013083 349 IFTTNHKEK---LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEE-MLMKVNVTPAEVAGELM 420 (450)
Q Consensus 349 I~TTN~~~~---ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~-l~~~~~~spa~i~~~L~ 420 (450)
|.++..|.. ++++|.+ ||. ..+++..|+.++|..+++......+..+.+++.+ +++...-+..++.+.|.
T Consensus 249 its~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 249 LTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred EECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 444444444 6789998 885 6899999999999999999886555455444433 34444556666655544
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.52 E-value=1.9e-13 Score=149.81 Aligned_cols=192 Identities=20% Similarity=0.245 Sum_probs=122.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.+|++++|++..... ...+...+.... ..++|||||||||||++|+++|+.++.+++.+++....
T Consensus 21 k~RP~tldd~vGQe~ii~~-~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGE-GRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhh-hHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 6789999999999887643 122222332211 24799999999999999999999999999888876432
Q ss_pred chhHHHHHh-------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc-
Q 013083 281 NSDLRSLLL-------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT- 352 (450)
Q Consensus 281 ~~~L~~l~~-------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT- 352 (450)
...++..+. ......+|||||||.+.. .....|+..++. ..+++|++|
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------~qQdaLL~~lE~------g~IiLI~aTT 145 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------AQQDALLPWVEN------GTITLIGATT 145 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------HHHHHHHHHhcC------ceEEEEEecC
Confidence 223333322 223567999999998732 123455655543 234555544
Q ss_pred -CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHH-HhcCCCCHHHHHHHHHHhccCcHHHH
Q 013083 353 -NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEM-LMKVNVTPAEVAGELMKSKCKYAEIS 430 (450)
Q Consensus 353 -N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l-~~~~~~spa~i~~~L~~~~~~~~~~a 430 (450)
|....+++++++ |+. .+.|+.++.+++..+++.++.... ..+ .+...+++ ++.+.|.+...+|+..+
T Consensus 146 enp~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~-------~~~g~~~v~I~d-eaL~~La~~s~GD~R~l 214 (725)
T PRK13341 146 ENPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKE-------RGYGDRKVDLEP-EAEKHLVDVANGDARSL 214 (725)
T ss_pred CChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHH-------hhcCCcccCCCH-HHHHHHHHhCCCCHHHH
Confidence 333578999998 654 499999999999999998775210 000 01122333 33455555455666666
Q ss_pred HHHHHHHH
Q 013083 431 LQGIVKFL 438 (450)
Q Consensus 431 l~~l~~~l 438 (450)
+..|..++
T Consensus 215 ln~Le~a~ 222 (725)
T PRK13341 215 LNALELAV 222 (725)
T ss_pred HHHHHHHH
Confidence 66555544
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.9e-13 Score=146.92 Aligned_cols=160 Identities=16% Similarity=0.317 Sum_probs=120.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc-----------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD----------- 269 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~----------- 269 (450)
.++|.+|++|+|++.+++.+.+.+.. | ..+.++||+||+|+|||++|+++|+.++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 78999999999999998887775531 1 124689999999999999999999988532
Q ss_pred ------------------EEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCch
Q 013083 270 ------------------IYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNK 325 (450)
Q Consensus 270 ------------------~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~ 325 (450)
++.++..+...-+.+++++..+. ..-|+||||+|.+. .
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------------~ 146 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------------T 146 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------------H
Confidence 33444333334456777665432 46799999999772 2
Q ss_pred hhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 326 VTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 326 ~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
...+.||..|+.. ++..++|++|+.++++.+.+++ |+. .++|..++.++....+...+..+...+
T Consensus 147 ~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 147 AAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred HHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3577888888764 4567888888888899999998 885 599999999998888888776554444
No 103
>PRK06620 hypothetical protein; Validated
Probab=99.52 E-value=6e-13 Score=126.11 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=118.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCC-CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGK-AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~ 279 (450)
..+..+|++++-.+.-. .....+..+... .+. +..+.++||||||||||+|++++|+..+..++. ....
T Consensus 9 ~~~~~tfd~Fvvg~~N~-~a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~- 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSND-QAYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF- 78 (214)
T ss_pred CCCCCCchhhEecccHH-HHHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-
Confidence 34455799876554322 234444444321 122 223679999999999999999999998764322 1111
Q ss_pred CchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCC--
Q 013083 280 SNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEK-- 357 (450)
Q Consensus 280 ~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~-- 357 (450)
.. ..+ ....+|+|||||.+ ....+..++|.+.. .+..+++.++..|..
T Consensus 79 -~~---~~~---~~~d~lliDdi~~~------------------~~~~lf~l~N~~~e-----~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 79 -NE---EIL---EKYNAFIIEDIENW------------------QEPALLHIFNIINE-----KQKYLLLTSSDKSRNFT 128 (214)
T ss_pred -ch---hHH---hcCCEEEEeccccc------------------hHHHHHHHHHHHHh-----cCCEEEEEcCCCccccc
Confidence 11 111 24578999999843 11345566665543 234566666655543
Q ss_pred CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCC-HHHHHHHHHHhccCcHHHHHHHH
Q 013083 358 LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVT-PAEVAGELMKSKCKYAEISLQGI 434 (450)
Q Consensus 358 ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~s-pa~i~~~L~~~~~~~~~~al~~l 434 (450)
+ |+|++ |+. ..+++..|+.+.+..+++.... ..++. +.++.++|.++..+|...++..|
T Consensus 129 l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~---------------~~~l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 129 L-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS---------------ISSVTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred h-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 5 88988 876 3589999999999888876542 12333 67888889888777887766666
Q ss_pred HHHHHHHhhhhhccC
Q 013083 435 VKFLHAKMNEQHKVT 449 (450)
Q Consensus 435 ~~~l~~~~~~~~~~t 449 (450)
..........++.+|
T Consensus 191 ~~l~~~~~~~~~~it 205 (214)
T PRK06620 191 ENINYFALISKRKIT 205 (214)
T ss_pred HHHHHHHHHcCCCCC
Confidence 654333333444444
No 104
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=3.5e-13 Score=139.72 Aligned_cols=191 Identities=16% Similarity=0.229 Sum_probs=116.5
Q ss_pred cCCCCCCcccc-cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEe
Q 013083 201 LKHPMNFNTLA-LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLD 274 (450)
Q Consensus 201 ~~~p~~f~~l~-~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~ 274 (450)
+....+|++++ |... ......+..+...+ |.. ..+++||||||||||+|++++|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n--~~a~~~~~~~~~~~------~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN--RLAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcH--HHHHHHHHHHHhCc------Ccc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 34455899854 4332 22333344443322 211 3578999999999999999999987 56788888
Q ss_pred cCccCC-------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeE
Q 013083 275 LTDVQS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRI 347 (450)
Q Consensus 275 ~~~~~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~i 347 (450)
+.++.. ...+..+........+|+|||||.+.. .. .+...|+..++.+... +..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~-------------~~---~~~~~l~~~~n~~~~~--~~~i 235 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG-------------KE---RTQEEFFHTFNALHEN--GKQI 235 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC-------------CH---HHHHHHHHHHHHHHHC--CCCE
Confidence 766421 111222222334567999999998742 11 1223344444443331 2344
Q ss_pred EEEEcCCCC---CCCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHH-HHHHhcCCCCHHHHHHHHH
Q 013083 348 IIFTTNHKE---KLDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQI-EEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 348 iI~TTN~~~---~ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei-~~l~~~~~~spa~i~~~L~ 420 (450)
||.++..|. .+++.|.+ ||. ..++++.|+.++|..+++..+...+..+.+++ +.+++...-+..++.+.|.
T Consensus 236 iits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred EEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 444444454 46788988 886 57999999999999999998876655554444 3344444556666555543
No 105
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.4e-13 Score=141.73 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=119.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
.++|.+|++++|++.+++.+...+. .. ..+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~----~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD----NN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 6899999999999999888777653 11 1356799999999999999999999873
Q ss_pred -----------CcEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 268 -----------FDIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 268 -----------~~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.+++.++.++-..-+.++.++... ...-|++|||+|.+- ....+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------~~A~NA 136 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------KEAFNA 136 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------HHHHHH
Confidence 245666654433446677776542 235699999998772 346778
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
||..|+.. +....+|++|+.+.++.+++++ |+. +++|..++.++....+...+..++.
T Consensus 137 LLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 137 LLKTLEEP----PSYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred HHHHHhhc----CCceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 88888864 3456777888888999999999 864 6999999999888877776655433
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.1e-13 Score=140.87 Aligned_cols=156 Identities=17% Similarity=0.298 Sum_probs=112.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+...+. . | ..+..||||||||+|||++|+++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 5789999999999998887766553 1 1 12457999999999999999999999854
Q ss_pred --------------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCC
Q 013083 269 --------------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQG 322 (450)
Q Consensus 269 --------------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~ 322 (450)
+++.++......-+.++.+...+ ...-|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 23344433322345566654444 2456999999997731
Q ss_pred CchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 323 DNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 323 ~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
...+.|+..++.. ++..++|++|+.+..+-+++.+ |+. +++|+.++.++....+...+...
T Consensus 142 ---~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 142 ---AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred ---HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence 2456778877643 3456777777888889899988 775 49999999988887777766444
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.9e-13 Score=145.38 Aligned_cols=156 Identities=17% Similarity=0.295 Sum_probs=116.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|.+.+++.+...+.. . ....+||||||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~----~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS----N--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 67899999999999998887776642 1 11358999999999999999999999854
Q ss_pred --------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhH
Q 013083 269 --------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTL 328 (450)
Q Consensus 269 --------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l 328 (450)
+++.++......-+.+++++..+. ..-|+||||+|.+- ....
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------------~~a~ 138 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------------TAAF 138 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------------HHHH
Confidence 345555443334456777765542 35699999999772 2356
Q ss_pred HhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 329 SGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 329 ~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
+.||..|+.. +...++|++|++++.+-++|++ |+.. ++|+.++.++....+......+
T Consensus 139 naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc~~-~~f~~l~~~ei~~~L~~ia~ke 196 (620)
T PRK14948 139 NALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RCQR-FDFRRIPLEAMVQHLSEIAEKE 196 (620)
T ss_pred HHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--heeE-EEecCCCHHHHHHHHHHHHHHh
Confidence 7889988853 4567888888889999999998 8854 8999998887776666555443
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4e-13 Score=141.66 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=115.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+.+.+.+.+.. . ..+..||||||||+|||++|+.+|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL----Q--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 67999999999999988877666531 1 12457999999999999999999998752
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.++-..-+.++.+.... ..+-|++|||+|.+. ....+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------~~a~na 138 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------KEAFNA 138 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------------HHHHHH
Confidence 34555554333334455543332 246799999999773 224567
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..++.. +...++|++|+.++.+.+++.+ |+. .+.|+.++.++....+...+...+
T Consensus 139 LLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 139 LLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred HHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcC
Confidence 88877753 3567777788888899999998 775 599999999999888888765544
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.6e-13 Score=144.17 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=117.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|.+|++++|++.+++.+...+.. . ..+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES----N--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 57899999999999999887776642 1 12467999999999999999999999853
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++...-..-+.++.+...+ ...-|++|||+|.+- ....+.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------~~a~na 138 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------NSAFNA 138 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------------HHHHHH
Confidence 34555543322334566654322 246699999999772 235778
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
||..++.. +...++|++|+.+.++.++|++ |+.. ++|..++.++....+...+...+
T Consensus 139 LLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~~-~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 139 LLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQH-FNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred HHHhhccC----CCCEEEEEecCChHHhHHHHHH--hceE-EEecCCCHHHHHHHHHHHHHHcC
Confidence 88888753 4667888888889999999999 8864 89999999998888877664443
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.4e-13 Score=144.86 Aligned_cols=158 Identities=16% Similarity=0.268 Sum_probs=115.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
.++|.+|++++|++.+++.+...+.. . .....||||||||+|||++++++|+.++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~----~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE----G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh----C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 67899999999999998887665542 1 12357899999999999999999998742
Q ss_pred -------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 269 -------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 269 -------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
+++.++.+.....+.++.+.... ...-|+||||+|.+. ...++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------------~~a~n 138 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------------TAAFN 138 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------------HHHHH
Confidence 34555554333445566554332 246799999999772 23567
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
.||..++.. +...++|++|+..+.+.+.+++ |+. .++|..++..+...++.......+.
T Consensus 139 aLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 139 ALLKTLEEP----PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred HHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 788888764 3567788888888888889988 775 4899999999888877776654433
No 111
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.49 E-value=1.5e-12 Score=137.79 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=122.6
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhc---C--------------hhHH----hhhCCCCCceeeeeCCC
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMN---G--------------KEYY----TRVGKAWKRGYLLYGPP 251 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~---~--------------~~~~----~~~g~~~~rgiLL~Gpp 251 (450)
.|.. ...|..|.+|.+++.+-..++.+|+.|-. + ++.+ ...++|.++-+||+|||
T Consensus 260 LWVd----ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 260 LWVD----KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred eeec----ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 6866 89999999999999999999999998731 1 0111 11367778889999999
Q ss_pred CCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcC----------CCceEEEEEcccccccccccCcccccCCCC
Q 013083 252 GTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSM----------PSRSMLVIEDIDCSITLENRDSKDQAGHNQ 321 (450)
Q Consensus 252 GTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~----------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~ 321 (450)
|-||||||+.+|++.||.+++++.++-.+...+++.+..+ .+|..|||||||...
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 9999999999999999999999999998877776655432 468899999999542
Q ss_pred CCchhhHHhHHHHhh--cccccCC---------------CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHH
Q 013083 322 GDNKVTLSGLLNFID--GLWSCCS---------------EGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQ 384 (450)
Q Consensus 322 ~~~~~~l~~LL~~ld--g~~~~~~---------------~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~ 384 (450)
...+..++..+. +...... =.|-||+.||+. .-|||+.---+-.+|+|..|......+
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHH
Confidence 223333333332 1110000 125799999964 357775222688889999998876554
Q ss_pred HHH
Q 013083 385 LAF 387 (450)
Q Consensus 385 l~~ 387 (450)
-++
T Consensus 476 RL~ 478 (877)
T KOG1969|consen 476 RLN 478 (877)
T ss_pred HHH
Confidence 333
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=9.7e-13 Score=131.38 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=112.6
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---- 267 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---- 267 (450)
..|.. .++|.+|++++|.+++++.+...+. ... ..++|||||||||||++++++++++.
T Consensus 5 ~~w~~----kyrP~~~~~~~g~~~~~~~l~~~i~----~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~ 67 (319)
T PRK00440 5 EIWVE----KYRPRTLDEIVGQEEIVERLKSYVK----EKN---------MPHLLFAGPPGTGKTTAALALARELYGEDW 67 (319)
T ss_pred Cccch----hhCCCcHHHhcCcHHHHHHHHHHHh----CCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 35866 8999999999999988877766553 211 13589999999999999999999872
Q ss_pred -CcEEEEecCccCCchhHHH----HHhcC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 268 -FDIYDLDLTDVQSNSDLRS----LLLSM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 268 -~~~~~l~~~~~~~~~~L~~----l~~~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
..++.++.++......++. +.... ..+.+|+|||+|.+.. .....|+..++..
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------------~~~~~L~~~le~~ 129 (319)
T PRK00440 68 RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------------DAQQALRRTMEMY 129 (319)
T ss_pred ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------------HHHHHHHHHHhcC
Confidence 3455565544332222222 22222 2356999999997732 1234566666543
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCC
Q 013083 339 WSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHH 395 (450)
Q Consensus 339 ~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 395 (450)
.....+|+++|.+..+.+++.+ |+.+ ++++.++.++...++..++...+.
T Consensus 130 ----~~~~~lIl~~~~~~~l~~~l~s--r~~~-~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 130 ----SQNTRFILSCNYSSKIIDPIQS--RCAV-FRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred ----CCCCeEEEEeCCccccchhHHH--Hhhe-eeeCCCCHHHHHHHHHHHHHHcCC
Confidence 2345677788888888888888 7765 899999999988888887765543
No 113
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=2.9e-12 Score=130.69 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=109.2
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---------CcEEEEecCc
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---------FDIYDLDLTD 277 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---------~~~~~l~~~~ 277 (450)
.+.+++.++..+.|...+...+.... +.+++|+||||||||++++++++++. ..++.++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~---------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSR---------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 36789999999999888877665321 35799999999999999999998763 5678888876
Q ss_pred cCCchh--------------------------HHHH---HhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhH
Q 013083 278 VQSNSD--------------------------LRSL---LLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTL 328 (450)
Q Consensus 278 ~~~~~~--------------------------L~~l---~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l 328 (450)
..+... +..+ +.....+.||+|||+|.+.. ..+..+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---------------~~~~~L 149 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---------------DDDDLL 149 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---------------CCcHHH
Confidence 533111 1111 11223567999999998852 011234
Q ss_pred HhHHHHhhcccccCCCCeEEEEEcCCCC---CCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhC
Q 013083 329 SGLLNFIDGLWSCCSEGRIIIFTTNHKE---KLDPALLRPGRMD-MHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 329 ~~LL~~ldg~~~~~~~~~iiI~TTN~~~---~ld~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
..|+...+. ....+..+.+|+++|.++ .+++.+.+ ||. ..|+|+.++.++..++++..+.
T Consensus 150 ~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 150 YQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 444443111 111124577888888875 57888877 664 6799999999999999998774
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.48 E-value=5.2e-13 Score=147.93 Aligned_cols=160 Identities=22% Similarity=0.231 Sum_probs=116.7
Q ss_pred Cc-ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhH-
Q 013083 207 FN-TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDL- 284 (450)
Q Consensus 207 f~-~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L- 284 (450)
++ +..|.+++|+.|++++...... +......++|+||||||||++++++|+.++.+++.++++...+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 44 3889999999999887644321 11223568999999999999999999999999999998876543333
Q ss_pred --------------HHHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc----cc-----
Q 013083 285 --------------RSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL----WS----- 340 (450)
Q Consensus 285 --------------~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~----~~----- 340 (450)
.+.+..+. ...||+|||||.+.. .......+.|+..+|.- +.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~--------------~~~g~~~~aLlevld~~~~~~~~d~~~~ 458 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS--------------DMRGDPASALLEVLDPEQNVAFSDHYLE 458 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc--------------ccCCCHHHHHHHHhccccEEEEeccccc
Confidence 22233332 456899999998843 01112456777777731 00
Q ss_pred --cCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 341 --CCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 341 --~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
..-.++++|+|+|.. .++|+|++ ||.+ |.++.++.++..+|+++|+.
T Consensus 459 ~~~dls~v~~i~TaN~~-~i~~aLl~--R~~i-i~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 459 VDYDLSDVMFVATSNSM-NIPAPLLD--RMEV-IRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccCCceEEEEcCCCC-CCCHHHhc--ceee-eecCCCCHHHHHHHHHHhhh
Confidence 012567889999987 59999999 9975 99999999999999999984
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=7.3e-13 Score=141.14 Aligned_cols=192 Identities=13% Similarity=0.183 Sum_probs=119.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEec
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDL 275 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~ 275 (450)
+....+|++++..+.-. .....+...... .+. +.+.++|||++|||||+|++|||+++ +..++.+++
T Consensus 281 L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 44455899987544322 122222222222 121 23569999999999999999999987 567888887
Q ss_pred CccCC-------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE
Q 013083 276 TDVQS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII 348 (450)
Q Consensus 276 ~~~~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii 348 (450)
.++.. ...+..+.....+..+|+||||+.+.. ....+..+..++|.+. . .+.-|
T Consensus 353 eef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g-------------ke~tqeeLF~l~N~l~---e---~gk~I 413 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED-------------KESTQEEFFHTFNTLH---N---ANKQI 413 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC-------------CHHHHHHHHHHHHHHH---h---cCCCE
Confidence 66521 111222223345678999999998743 1112233444444443 2 12335
Q ss_pred EEEcCCC----CCCCccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHH-hcCCCCHHHHHHHHHH
Q 013083 349 IFTTNHK----EKLDPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEML-MKVNVTPAEVAGELMK 421 (450)
Q Consensus 349 I~TTN~~----~~ld~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~-~~~~~spa~i~~~L~~ 421 (450)
|+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++.........+.+++.+.+ .+..-+..++...|.+
T Consensus 414 IITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~r 491 (617)
T PRK14086 414 VLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIR 491 (617)
T ss_pred EEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5566654 357889999 76 6777999999999999999888766666666555544 4445556666555543
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7.7e-13 Score=143.10 Aligned_cols=180 Identities=16% Similarity=0.282 Sum_probs=130.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK------------- 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~------------- 267 (450)
.++|.+|++++|++.+++.+...+. .. ..+..||||||+|+|||++++++|+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~----~~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA----TN--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 6899999999999999888777664 11 1246799999999999999999999874
Q ss_pred ------------CcEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 268 ------------FDIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 268 ------------~~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
.+++.++..+...-+.++.++..+. ..-|++|||+|.+. ....+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------------~~a~n 139 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------------QAAFN 139 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------------HHHHH
Confidence 4566676654444566777765432 35699999999773 23567
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcC
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKV 408 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~ 408 (450)
.|+..|+.. ++..++|++|+.+.++-++|++ |+.. ++|..++.++....+...+..++....+ .+..++...
T Consensus 140 aLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s 212 (614)
T PRK14971 140 AFLKTLEEP----PSYAIFILATTEKHKILPTILS--RCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888888864 4567888888888999999999 8855 9999999999888887766555444333 244444444
Q ss_pred CCCHHHHHH
Q 013083 409 NVTPAEVAG 417 (450)
Q Consensus 409 ~~spa~i~~ 417 (450)
+-+..++..
T Consensus 213 ~gdlr~al~ 221 (614)
T PRK14971 213 DGGMRDALS 221 (614)
T ss_pred CCCHHHHHH
Confidence 444444433
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=141.57 Aligned_cols=157 Identities=16% Similarity=0.270 Sum_probs=114.1
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-----------
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF----------- 268 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~----------- 268 (450)
...+|.+|++++|++.+++.+.+.+. .. ..+.+|||+||||||||++|+++|+.++.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~----~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLR----MD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 35789999999999988887665442 21 22467999999999999999999999854
Q ss_pred ---------------------cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCC
Q 013083 269 ---------------------DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQ 321 (450)
Q Consensus 269 ---------------------~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~ 321 (450)
+++.++......-+.++.+.... ...-|++|||+|.+.
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------- 140 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------- 140 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC---------------
Confidence 23334333322345666665444 245699999999773
Q ss_pred CCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 322 GDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 322 ~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
....+.||..|+.. ++..++|++|+.+.++.+++++ |+. .++|..++.++....+...+..+
T Consensus 141 ---~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 141 ---TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred ---HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHc
Confidence 13467788888764 3456777788888999999998 774 49999999998887777665443
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.5e-12 Score=143.36 Aligned_cols=159 Identities=17% Similarity=0.280 Sum_probs=115.4
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHH
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLL 288 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~ 288 (450)
.++|+++.++.|.+.+.....+-. ..++ +..++||+||||||||++|+++|..++.+++.+++++......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~k-p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHK-PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCC-CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 478999999998888865533110 0111 224699999999999999999999999999999998875433333333
Q ss_pred hc------------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-ccc-C-----C
Q 013083 289 LS------------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL-WSC-C-----S 343 (450)
Q Consensus 289 ~~------------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~-~~~-~-----~ 343 (450)
.. ....+||+|||||.+- ....+.||..||.- ... . -
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------------~~v~~~LLq~ld~G~ltd~~g~~vd~ 596 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------------PDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------------HHHHHHHHHHHhcCeeecCCCceecC
Confidence 21 1246899999999773 23677888888732 211 1 1
Q ss_pred CCeEEEEEcCCC-------------------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 344 EGRIIIFTTNHK-------------------------EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 344 ~~~iiI~TTN~~-------------------------~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+.+||+|||.- ..+.|+|+. |+|.+|.|+.++.+...+|+..++.
T Consensus 597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999932 125678887 9999999999999999999988774
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=1.2e-12 Score=146.51 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=112.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~ 271 (450)
-.|..++.++|.++....+++.+. ++ .+.+++|+||||||||++|+.+|+.+ +.+++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~----r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL----RR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh----cC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 367789999999987666666542 11 24689999999999999999999986 36688
Q ss_pred EEecCccCC--------chhHHHHHhcC---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 272 DLDLTDVQS--------NSDLRSLLLSM---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 272 ~l~~~~~~~--------~~~L~~l~~~~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
.++++.+.. +..++.++..+ ..++|||||||+.+....... + ....-+-|+..+.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---------~-~~d~~n~Lkp~l~---- 313 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---------G-QGDAANLLKPALA---- 313 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---------c-cccHHHHhhHHhh----
Confidence 888876531 35777777755 357899999999997521110 0 1111122333332
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 341 CCSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+...+|+||+..+ .+|+||.| ||. .|.++.|+.++...|++.+..
T Consensus 314 --~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 314 --RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred --CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 35677888887643 48999999 996 599999999999999765554
No 120
>PRK09087 hypothetical protein; Validated
Probab=99.44 E-value=3.5e-12 Score=121.85 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=113.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
.....+|++++..+.-.. ....+..+.. . ..+.++||||+|+|||+|++++|+..+..++... .+.
T Consensus 14 ~~~~~~~~~Fi~~~~N~~-a~~~l~~~~~---------~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~- 79 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRA-AVSLVDHWPN---------W-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG- 79 (226)
T ss_pred CCCCCChhceeecCchHH-HHHHHHhccc---------C-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-
Confidence 344568999875322111 3333333211 1 1245899999999999999999998776654442 221
Q ss_pred chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC---C
Q 013083 281 NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE---K 357 (450)
Q Consensus 281 ~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~---~ 357 (450)
...+. ... ..+|+|||+|.+.. .+..+..++|.+.. .+..+|+.++..|. .
T Consensus 80 ~~~~~----~~~-~~~l~iDDi~~~~~----------------~~~~lf~l~n~~~~-----~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 80 SDAAN----AAA-EGPVLIEDIDAGGF----------------DETGLFHLINSVRQ-----AGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred hHHHH----hhh-cCeEEEECCCCCCC----------------CHHHHHHHHHHHHh-----CCCeEEEECCCChHHhcc
Confidence 11111 111 25788999997521 12335555555432 12344444444443 2
Q ss_pred CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCC-HHHHHHHHHHhccCcHHHHHHHH
Q 013083 358 LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVT-PAEVAGELMKSKCKYAEISLQGI 434 (450)
Q Consensus 358 ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~s-pa~i~~~L~~~~~~~~~~al~~l 434 (450)
..++|++ |+. ..+++..|+.+.+.++++..+... ++. +.|+.++|.++..++...++..+
T Consensus 134 ~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~---------------~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 134 KLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR---------------QLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred ccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 3688998 875 779999999999999999876432 232 55667777776666666666555
Q ss_pred HHHHHHHhhhhhccC
Q 013083 435 VKFLHAKMNEQHKVT 449 (450)
Q Consensus 435 ~~~l~~~~~~~~~~t 449 (450)
..........++++|
T Consensus 197 ~~L~~~~~~~~~~it 211 (226)
T PRK09087 197 DRLDRLALERKSRIT 211 (226)
T ss_pred HHHHHHHHHhCCCCC
Confidence 444444444444443
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=1.3e-12 Score=134.87 Aligned_cols=176 Identities=19% Similarity=0.204 Sum_probs=113.2
Q ss_pred Cc-ccccChHHHHHHHHHHHHHhcChhHHhh--hCC-CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 207 FN-TLALDSELKKAIMEDLDNFMNGKEYYTR--VGK-AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 207 f~-~l~~~~~~k~~i~~~l~~~l~~~~~~~~--~g~-~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
++ .++|+++.|+.+...+.....+-..... -+. ....++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 4899999999887666443332110000 011 13578999999999999999999999999999999987642
Q ss_pred ------chhHHHHHhc------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-------
Q 013083 281 ------NSDLRSLLLS------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC------- 341 (450)
Q Consensus 281 ------~~~L~~l~~~------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~------- 341 (450)
...+..++.. ...++||+|||||.+... +.... ...+.....+...||..|||....
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~--~~~~~--~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK--SENPS--ITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc--cCCCC--cCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 1223444332 236799999999998642 11100 001111234678899999874311
Q ss_pred --CCCCeEEEEEcCCCC----------------------------------------------------CCCccccCCCc
Q 013083 342 --CSEGRIIIFTTNHKE----------------------------------------------------KLDPALLRPGR 367 (450)
Q Consensus 342 --~~~~~iiI~TTN~~~----------------------------------------------------~ld~aLlrpgR 367 (450)
...+.++|.|+|-.. .+.|+|+ ||
T Consensus 225 ~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gR 302 (412)
T PRK05342 225 KHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GR 302 (412)
T ss_pred CcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CC
Confidence 112346677776510 0234444 49
Q ss_pred ceeEEEeCCCCHHHHHHHHHH
Q 013083 368 MDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 368 ~d~~I~~~~p~~~~r~~l~~~ 388 (450)
+|.++.|..++.+....|+..
T Consensus 303 ld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 303 LPVVATLEELDEEALVRILTE 323 (412)
T ss_pred CCeeeecCCCCHHHHHHHHHH
Confidence 999999999999999988874
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=1.6e-12 Score=135.81 Aligned_cols=190 Identities=15% Similarity=0.257 Sum_probs=114.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEec
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDL 275 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~ 275 (450)
+....+|++++-.+.-. .....+..+...+ | +..+++||||||||||+|++++|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNS-FAYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchH-HHHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 44456899987433322 2233343343322 1 13579999999999999999999986 457788877
Q ss_pred CccCC-------chhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeE
Q 013083 276 TDVQS-------NSDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRI 347 (450)
Q Consensus 276 ~~~~~-------~~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~i 347 (450)
.++.. ...+..+..... ++.+|+|||++.+.+ .. .+...|+..++.+... +. .
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~-------------~~---~~q~elf~~~n~l~~~--~k-~ 229 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG-------------KT---GVQTELFHTFNELHDS--GK-Q 229 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC-------------cH---HHHHHHHHHHHHHHHc--CC-e
Confidence 65421 111222222222 578999999998743 01 1112334444443332 23 4
Q ss_pred EEEEc-CCCCC---CCccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHH-hcCCCCHHHHHHHHH
Q 013083 348 IIFTT-NHKEK---LDPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEML-MKVNVTPAEVAGELM 420 (450)
Q Consensus 348 iI~TT-N~~~~---ld~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~-~~~~~spa~i~~~L~ 420 (450)
+|+|| +.|.. +++.+.+ || ...+.+..|+.+.|..|++.........+.+++...+ +...-+..++.+.|.
T Consensus 230 iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred EEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 55555 55544 5678888 66 4678999999999999999988765555555544443 444445556555554
No 123
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=6.8e-13 Score=130.61 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=120.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc---EEEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD---IYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~---~~~l~~~~ 277 (450)
..+|.++++.+|++.+.-+ -..+...+.... -.+++||||||||||+||+.||+...-+ |++++.+.
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 4578888888888766444 223333333221 2479999999999999999999988655 66666555
Q ss_pred cCCchhHHHHHhcC-------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 278 VQSNSDLRSLLLSM-------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 278 ~~~~~~L~~l~~~~-------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
- ...+++.+|.+. ..+.|||||||+++-. .....||-.++ .+.+++|+
T Consensus 201 a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------------sQQD~fLP~VE------~G~I~lIG 255 (554)
T KOG2028|consen 201 A-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------------SQQDTFLPHVE------NGDITLIG 255 (554)
T ss_pred c-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------------hhhhcccceec------cCceEEEe
Confidence 4 345678877765 3689999999998721 11223343332 13456664
Q ss_pred -EcCCC-CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc--cCCCcHHHHHHHHhcC-CCCHHHHHHHHHHhccC
Q 013083 351 -TTNHK-EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI--SHHHLFEQIEEMLMKV-NVTPAEVAGELMKSKCK 425 (450)
Q Consensus 351 -TTN~~-~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~--~~~~l~~ei~~l~~~~-~~spa~i~~~L~~~~~~ 425 (450)
||.+| -.|..||++ |+.+ +.+..........|+.+-+.. ++......+ ++- -+-...|.++|.....+
T Consensus 256 ATTENPSFqln~aLlS--RC~V-fvLekL~~n~v~~iL~raia~l~dser~~~~l----~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RCRV-FVLEKLPVNAVVTILMRAIASLGDSERPTDPL----PNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred cccCCCccchhHHHHh--ccce-eEeccCCHHHHHHHHHHHHHhhccccccCCCC----CCcchhhhHHHHHHHHHhcCc
Confidence 55444 579999999 7755 777888888888888763321 111100000 000 01123456666665566
Q ss_pred cHHHHHHHHHHH
Q 013083 426 YAEISLQGIVKF 437 (450)
Q Consensus 426 ~~~~al~~l~~~ 437 (450)
|+..||+.|.-.
T Consensus 329 DaR~aLN~Lems 340 (554)
T KOG2028|consen 329 DARAALNALEMS 340 (554)
T ss_pred hHHHHHHHHHHH
Confidence 777777766554
No 124
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=7.2e-13 Score=148.60 Aligned_cols=158 Identities=16% Similarity=0.248 Sum_probs=115.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~ 271 (450)
-.|..++.++|.+.....+++.|.. + .+.+++|+||||||||++++++|..+ +.+++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r----~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR----R---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc----C---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 4577899999999877777665532 1 24689999999999999999999998 78999
Q ss_pred EEecCccCC--------chhHHHHHhcC---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 272 DLDLTDVQS--------NSDLRSLLLSM---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 272 ~l~~~~~~~--------~~~L~~l~~~~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
.++++.+.. +..++.+|... ..++||||||||.+.+.... .+ ......+|. ....
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---------~~--~~d~~~~lk---p~l~ 304 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---------DG--AMDAGNMLK---PALA 304 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---------cc--chhHHHHhc---chhh
Confidence 998887531 34577777653 46899999999999752110 00 011122222 1111
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 341 CCSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+...+|++|+..+ .+|+||.| ||+. |.++.|+.+++..+++....
T Consensus 305 --~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 305 --RGELHCVGATTLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred --cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHhh
Confidence 35678888888776 48999999 9985 88999999999999887654
No 125
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.1e-12 Score=137.37 Aligned_cols=161 Identities=17% Similarity=0.307 Sum_probs=127.3
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-----------
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF----------- 268 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~----------- 268 (450)
..++|.+|++++|++.+.+.+.+.+..=. ...+|||.||.||||||+|+.+|+.++.
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 35789999999999998888877664211 1358999999999999999999998853
Q ss_pred -------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHH
Q 013083 269 -------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLS 329 (450)
Q Consensus 269 -------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~ 329 (450)
+++++|..+-.+-+++|++..+.. +.-|.+|||++.+ +....+
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------------S~~afN 137 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------------SKQAFN 137 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------------hHHHHH
Confidence 344445444455677888887763 3569999999977 345788
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+||.-++.- +..+++|++|..++++++.+++ |+.+ +.|...+.++....+...+..++-..
T Consensus 138 ALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rcq~-f~fkri~~~~I~~~L~~i~~~E~I~~ 198 (515)
T COG2812 138 ALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RCQR-FDFKRLDLEEIAKHLAAILDKEGINI 198 (515)
T ss_pred HHhcccccC----ccCeEEEEecCCcCcCchhhhh--cccc-ccccCCCHHHHHHHHHHHHHhcCCcc
Confidence 999988764 6789999999999999999999 8865 89999999999988888887664433
No 126
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=4.4e-12 Score=126.14 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=92.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHH-------------------HHhcCCCceEEEEEcc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRS-------------------LLLSMPSRSMLVIEDI 302 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~-------------------l~~~~~~~sIlviDdi 302 (450)
.+.+||.||||||||++++.+|..++.+++.++++...+..++-- +...+..+.+|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999998877633211110 0111235778999999
Q ss_pred cccccccccCcccccCCCCCCchhhHHhHHHHhhc--ccc--------cCCCCeEEEEEcCCCC------------CCCc
Q 013083 303 DCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG--LWS--------CCSEGRIIIFTTNHKE------------KLDP 360 (450)
Q Consensus 303 D~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg--~~~--------~~~~~~iiI~TTN~~~------------~ld~ 360 (450)
|..-+ .+++.|...++. ... .+.....+|+|+|..+ .+++
T Consensus 144 n~a~p------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 144 DAGRP------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred hccCH------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 97622 234444444331 110 0123567899999864 4689
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 361 ALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 361 aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
|++. ||-+.+.++||+.+.-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999 999989999999999999887654
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.40 E-value=7.8e-12 Score=135.63 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=123.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEecCc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDLTD 277 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~~~ 277 (450)
+.|.+-++..++|...|...+.... ....++|+||||||||++++.+.+++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsg--------pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSG--------SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCC--------CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6788888888888888877765311 12345699999999999999998877 25678899966
Q ss_pred cCCc-----------------------hhHHHHHhcCC----CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 278 VQSN-----------------------SDLRSLLLSMP----SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 278 ~~~~-----------------------~~L~~l~~~~~----~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+.+. ..+..+|.... ...||+|||||.+.. ..+..|-.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k---------------K~QDVLYn 891 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT---------------KTQKVLFT 891 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc---------------cHHHHHHH
Confidence 5321 22334443331 246999999999853 12334444
Q ss_pred HHHHhhcccccCCCCeEEEEEcCC---CCCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHh
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNH---KEKLDPALLRPGRMDM-HIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLM 406 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~---~~~ld~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~ 406 (450)
|++... . .+..++||+++|. ++.++|.+.+ |+.. .|.|++++.+++.+|++..+......+.+
T Consensus 892 LFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdD------- 958 (1164)
T PTZ00112 892 LFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDH------- 958 (1164)
T ss_pred HHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCH-------
Confidence 444322 1 1345778888886 5677888888 6654 38889999999999999877532111222
Q ss_pred cCCCCHHHHHHHHHH---hccCcHHHHHHHHHHHHHH
Q 013083 407 KVNVTPAEVAGELMK---SKCKYAEISLQGIVKFLHA 440 (450)
Q Consensus 407 ~~~~spa~i~~~L~~---~~~~~~~~al~~l~~~l~~ 440 (450)
++.+.+.+ ...+|++.||+.|..+.+.
T Consensus 959 -------dAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 959 -------TAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred -------HHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 22233322 3356777777766666653
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=9.3e-13 Score=145.05 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=107.7
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEec
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDL 275 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~ 275 (450)
.++.++|.++....+++.+..- -+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4678888888888887765431 14688999999999999999999875 556677665
Q ss_pred CccC--------CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCC
Q 013083 276 TDVQ--------SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEG 345 (450)
Q Consensus 276 ~~~~--------~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~ 345 (450)
+.+. .+..++.++... ..++||||||||.++..... ...+..+..+|.. +.. .++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~----------~~g~~d~~nlLkp---~L~--~g~ 315 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA----------SGGQVDAANLIKP---LLS--SGK 315 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----------CCcHHHHHHHHHH---HHh--CCC
Confidence 5542 134456665543 35789999999999752110 1111222222322 211 356
Q ss_pred eEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 346 RIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 346 ~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
..+|++||.++ ..|++|.| ||+ .|+++.|+.+++..|++.+.
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 78888888764 57999999 997 59999999999999998654
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=5.9e-12 Score=131.88 Aligned_cols=188 Identities=12% Similarity=0.221 Sum_probs=116.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCcc
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDV 278 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~ 278 (450)
+.+|++++-.+.- +.....+..+...+ |.. .++++||||+|||||+|++|+++++ +..++.+++.++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4578887644432 22334444443322 222 2579999999999999999999975 467788877665
Q ss_pred CCc---------hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE
Q 013083 279 QSN---------SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII 349 (450)
Q Consensus 279 ~~~---------~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI 349 (450)
... ..+..+........+|+|||++.+.. ....+..+..++|.+.. .+..||
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~-------------k~~~~e~lf~l~N~~~~------~~k~iI 243 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY-------------KEKTNEIFFTIFNNFIE------NDKQLF 243 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-------------CHHHHHHHHHHHHHHHH------cCCcEE
Confidence 211 23334444456778999999997732 11223445555555432 122466
Q ss_pred EEcCCC----CCCCccccCCCcc--eeEEEeCCCCHHHHHHHHHHHhCccCC--CcHHHH-HHHHhcCCCCHHHHHHHHH
Q 013083 350 FTTNHK----EKLDPALLRPGRM--DMHIHMSYCTASVFEQLAFNYLGISHH--HLFEQI-EEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 350 ~TTN~~----~~ld~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~--~l~~ei-~~l~~~~~~spa~i~~~L~ 420 (450)
+|+|.+ ..+++.|.+ || ...+.+..|+.+++.+++++.+...+. .+.+++ +-++....-++..+...|.
T Consensus 244 ltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 244 FSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred EECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 666644 346788988 77 477889999999999999988764321 233333 3333444455555555443
No 130
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.3e-11 Score=125.36 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=107.9
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCccCCc
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDVQSN 281 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~~~~ 281 (450)
.+.+++-++..+++...+...+.... +.+++||||||||||++++.+++++ +..++.++|....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~---------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSR---------PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 36678888888888887766654211 3579999999999999999999987 577888888654221
Q ss_pred -----------------------hhH-H---HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHH
Q 013083 282 -----------------------SDL-R---SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNF 334 (450)
Q Consensus 282 -----------------------~~L-~---~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ 334 (450)
..+ . +.+.....+.||+|||+|.+.. ......+..|+..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~--------------~~~~~~l~~l~~~ 165 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE--------------KEGNDVLYSLLRA 165 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc--------------cCCchHHHHHHHh
Confidence 111 1 1112223467999999998851 1122356666665
Q ss_pred hhcccccCCCCeEEEEEcCCC---CCCCccccCCCcc-eeEEEeCCCCHHHHHHHHHHHhC
Q 013083 335 IDGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRM-DMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 335 ldg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~-d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
++... +.++.+|+++|.. +.+++.+.+ |+ ...|+|+.++.++..+++...+.
T Consensus 166 ~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 166 HEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 55432 2356788888866 356777766 55 35689999999999999987763
No 131
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=9.6e-12 Score=128.03 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=112.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHH----hhhCCC-CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYY----TRVGKA-WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~----~~~g~~-~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
+-++|+++.++.+...+.....+-... ...+.+ .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 346899999998877664333321100 000111 1468999999999999999999999999999998877631
Q ss_pred ------chhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-------
Q 013083 281 ------NSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC------- 341 (450)
Q Consensus 281 ------~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~------- 341 (450)
...+..++... ..++||+|||||.+... +...+. ..........+.||..|+|....
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~--~~~~s~--~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK--SENPSI--TRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh--hccccc--cccccchhHHHHHHHHhhccceecccCCCc
Confidence 22344444322 35789999999988641 111110 00111224677888888876421
Q ss_pred --CCCCeEEEEEcCCC---------------------------C-----------------------CCCccccCCCcce
Q 013083 342 --CSEGRIIIFTTNHK---------------------------E-----------------------KLDPALLRPGRMD 369 (450)
Q Consensus 342 --~~~~~iiI~TTN~~---------------------------~-----------------------~ld~aLlrpgR~d 369 (450)
.-.+.++|+|+|-. + .+.|+|+- |+|
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCC
Confidence 11345788898861 0 02345554 999
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q 013083 370 MHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~~ 389 (450)
.++.|...+.+...+|+..-
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKP 330 (413)
T ss_pred eEeecCCCCHHHHHHHHHHH
Confidence 99999999999988888753
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.38 E-value=4.2e-12 Score=120.82 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=106.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCcc
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDV 278 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~ 278 (450)
..+|++++-.+.- +.....+......+. . ....++||||+|+|||+|++|+|+++ +..++.+++.++
T Consensus 4 ~~tFdnfv~g~~N-~~a~~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 4 KYTFDNFVVGESN-ELAYAAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp T-SCCCS--TTTT-HHHHHHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCccccCCcCCcH-HHHHHHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 3478888633322 222333333333322 1 12468999999999999999999986 567888877665
Q ss_pred CC-------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 279 QS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 279 ~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
.. ...+..+........+|+|||++.+.. ...+...|...++.+.. .+..+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~----------------~~~~q~~lf~l~n~~~~--~~k~li~ts 137 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG----------------KQRTQEELFHLFNRLIE--SGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----------------HHHHHHHHHHHHHHHHH--TTSEEEEEE
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----------------chHHHHHHHHHHHHHHh--hCCeEEEEe
Confidence 21 233444555566788999999998743 12233444444444433 244555555
Q ss_pred cCCCCC---CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCc
Q 013083 352 TNHKEK---LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKY 426 (450)
Q Consensus 352 TN~~~~---ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~ 426 (450)
...|.. +++.|.+ |+. ..+++..|+.+.|..+++......... -|.++.++|..+..++
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--------------l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIE--------------LPEEVIEYLARRFRRD 201 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT----------------S-HHHHHHHHHHTTSS
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--------------CcHHHHHHHHHhhcCC
Confidence 556654 5678888 765 488999999999999998766433222 3566777777654444
Q ss_pred HH
Q 013083 427 AE 428 (450)
Q Consensus 427 ~~ 428 (450)
..
T Consensus 202 ~r 203 (219)
T PF00308_consen 202 VR 203 (219)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=1.5e-11 Score=136.48 Aligned_cols=159 Identities=19% Similarity=0.298 Sum_probs=111.3
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchh----
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSD---- 283 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~---- 283 (450)
+.++|+++.++.|.+.+...... +...++ +...+||+||||||||++|+++|..++.+++.+++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~-p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNK-PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCC-CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 45678888877777766532110 000011 1234899999999999999999999999999999988643222
Q ss_pred ---------------HHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC------
Q 013083 284 ---------------LRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC------ 342 (450)
Q Consensus 284 ---------------L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~------ 342 (450)
+.+.+. ....+||+|||||.+- ....+.|+..+|...-..
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~------------------~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH------------------PDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred hcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC------------------HHHHHHHHHhhccCeeecCCCccc
Confidence 222222 2356899999999763 246677888887532110
Q ss_pred -CCCeEEEEEcCCCC-------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 343 -SEGRIIIFTTNHKE-------------------------KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 343 -~~~~iiI~TTN~~~-------------------------~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
-.+.+||+|||... .+.|.|+. |+|.+|.|...+.++..+|+...+.
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 13468999998631 24677776 9999999999999999999998874
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=7.3e-12 Score=108.70 Aligned_cols=115 Identities=31% Similarity=0.428 Sum_probs=81.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHH-----------HHhcCCCceEEEEEccccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRS-----------LLLSMPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~-----------l~~~~~~~sIlviDdiD~l~~ 307 (450)
.++++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4689999999999999999999999 89999999887754322221 222334689999999987621
Q ss_pred ccccCcccccCCCCCCchhhHHhHHHHhhccccc--CCCCeEEEEEcCCCC--CCCccccCCCcceeEEEeCC
Q 013083 308 LENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC--CSEGRIIIFTTNHKE--KLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~--~~~~~iiI~TTN~~~--~ld~aLlrpgR~d~~I~~~~ 376 (450)
.....++..+...... ...+..+|+++|... .+++.+.. |++.++++++
T Consensus 99 ------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 ------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1234455555443221 124577888888776 77888888 9998888763
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.37 E-value=3.2e-12 Score=143.79 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=112.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~ 271 (450)
-.|..++.++|.++..+.++..+. ++ .+.+++|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~----r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLS----RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHh----cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 467789999999987666666553 21 25689999999999999999999986 67889
Q ss_pred EEecCccC--------CchhHHHHHhcC---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 272 DLDLTDVQ--------SNSDLRSLLLSM---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 272 ~l~~~~~~--------~~~~L~~l~~~~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
.++++.+. .+..++.++... ..++||||||||.+...... .+ .....+-|...+ .
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---------~~-~~d~~~~Lk~~l----~ 299 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---------EG-AMDAGNMLKPAL----A 299 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---------cc-hhHHHHHhchhh----h
Confidence 98877652 123567777654 35899999999998641110 00 111112222222 1
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 341 CCSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
.+...+|++|+..+ .+|++|.| ||.. |.++.|+.+++..|++.+...
T Consensus 300 --~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 300 --RGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred --cCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHH
Confidence 35677888887663 47999999 9975 899999999999999876543
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=1.3e-11 Score=133.86 Aligned_cols=173 Identities=20% Similarity=0.323 Sum_probs=112.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
..+|.+|++++|.+...+.++..+. . +.+..++|+||||||||++|+++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia----~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA----S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh----c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 3568999999999988887765442 1 124579999999999999999998766 3578
Q ss_pred EEEecCccCCc-hhHH----------------HHHhc------------CCCceEEEEEcccccccccccCcccccCCCC
Q 013083 271 YDLDLTDVQSN-SDLR----------------SLLLS------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQ 321 (450)
Q Consensus 271 ~~l~~~~~~~~-~~L~----------------~l~~~------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~ 321 (450)
+.+++..+... ..+. +.+.. ....++|+|||++.+-.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------- 279 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------- 279 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------
Confidence 89988765311 1110 11111 11357999999987732
Q ss_pred CCchhhHHhHHHHhhcc--------c----------------ccCCCCeEEE-EEcCCCCCCCccccCCCcceeEEEeCC
Q 013083 322 GDNKVTLSGLLNFIDGL--------W----------------SCCSEGRIII-FTTNHKEKLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 322 ~~~~~~l~~LL~~ldg~--------~----------------~~~~~~~iiI-~TTN~~~~ld~aLlrpgR~d~~I~~~~ 376 (450)
.....|+..++.- + ...+...++| +||+.++.++++|++ ||.. ++++.
T Consensus 280 ----~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~-i~~~p 352 (615)
T TIGR02903 280 ----LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAE-VFFEP 352 (615)
T ss_pred ----HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeE-EEeCC
Confidence 1233344444221 0 0011234444 466778899999998 9975 78999
Q ss_pred CCHHHHHHHHHHHhCccCCCcHHHHHHHHhc
Q 013083 377 CTASVFEQLAFNYLGISHHHLFEQIEEMLMK 407 (450)
Q Consensus 377 p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~ 407 (450)
++.+++..|+++++......+.+++.+++.+
T Consensus 353 ls~edi~~Il~~~a~~~~v~ls~eal~~L~~ 383 (615)
T TIGR02903 353 LTPEDIALIVLNAAEKINVHLAAGVEELIAR 383 (615)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999988764433343444444443
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=7.3e-12 Score=140.47 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=109.8
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEe
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLD 274 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~ 274 (450)
..++.++|.++..+.+++.+... .+++++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 35788999998888887766422 25789999999999999999999987 47899999
Q ss_pred cCccC--------CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH-HhhcccccCC
Q 013083 275 LTDVQ--------SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN-FIDGLWSCCS 343 (450)
Q Consensus 275 ~~~~~--------~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~-~ldg~~~~~~ 343 (450)
++.+. .+..++.++..+. .++||||||||.+...... . .......+|. .+. .
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---------~--g~~~~a~lLkp~l~------r 305 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---------E--GAIDAANILKPALA------R 305 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---------C--CcccHHHHhHHHHh------C
Confidence 87652 1346777876553 5789999999999752110 0 1112333333 222 2
Q ss_pred CCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q 013083 344 EGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 344 ~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 389 (450)
++..+|++|+..+ ..|++|.+ ||.. |.++.|+.++...|++..
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGL 353 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHH
Confidence 5567777777653 47899999 9976 899999999988877653
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=6e-11 Score=120.99 Aligned_cols=153 Identities=16% Similarity=0.274 Sum_probs=112.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
..+|+++++|+|.++.++.+.+.+.. | ..+..+||+||+|+||+++|.++|+.+-.
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999998888765532 1 22468999999999999999999998721
Q ss_pred ----------------------cEEEEecC--ccC-------CchhHHHHHhcC------CCceEEEEEccccccccccc
Q 013083 269 ----------------------DIYDLDLT--DVQ-------SNSDLRSLLLSM------PSRSMLVIEDIDCSITLENR 311 (450)
Q Consensus 269 ----------------------~~~~l~~~--~~~-------~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~ 311 (450)
+++.+... +-. .-+.++++.... ..+-|++|||+|.+
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------ 153 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------ 153 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc------
Confidence 12222211 100 123455554332 24679999999976
Q ss_pred CcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 312 DSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
+....+.||..++.. +.+.++|++|+.++.+.|.+++ |+.. +.|+.++.++..+++....
T Consensus 154 ------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc~~-i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 ------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RCRK-LRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cceE-EECCCCCHHHHHHHHHHhc
Confidence 235677889888763 3567888999999999999988 8854 9999999999888887754
No 139
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=6.6e-11 Score=120.09 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=120.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-------c-----
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-------D----- 269 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-------~----- 269 (450)
.||+.|+.|+|..+.++.+...+. . | ..+..+||+||+|+|||+++..+|+.+.. +
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~----~-------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR----E-------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH----c-------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 699999999999999888776553 1 1 12457999999999999999999998843 1
Q ss_pred ------------------EEEEecC-ccC--------CchhHHHHH---hcC---CCceEEEEEcccccccccccCcccc
Q 013083 270 ------------------IYDLDLT-DVQ--------SNSDLRSLL---LSM---PSRSMLVIEDIDCSITLENRDSKDQ 316 (450)
Q Consensus 270 ------------------~~~l~~~-~~~--------~~~~L~~l~---~~~---~~~sIlviDdiD~l~~~~~~~~~~~ 316 (450)
++.+... +.. +-+.++.+. ... ...-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1112110 000 113344432 222 245699999999872
Q ss_pred cCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC
Q 013083 317 AGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH 396 (450)
Q Consensus 317 ~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 396 (450)
....+.||..++.. +...++|+.|+.++.+.|.+++ |+ .+++|+.++.++...++.......+ -
T Consensus 155 --------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~ 218 (351)
T PRK09112 155 --------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-S 218 (351)
T ss_pred --------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-C
Confidence 34567789888763 3456777778889999999998 88 5799999999999988887322111 1
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHH
Q 013083 397 LFEQIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 397 l~~ei~~l~~~~~~spa~i~~~L 419 (450)
..+.+..++...+-+|....+.+
T Consensus 219 ~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 219 DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 12334445555555565544433
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=7.8e-12 Score=130.66 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=99.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC-------chhHHHHHhcCCCceEEEEEcccccccccccC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRD 312 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~ 312 (450)
++++||||||+|||+|++|+|+++ +..++.++...+.. ......+-....+..+|+||||+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~----- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG----- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----
Confidence 579999999999999999999987 67788887655421 111112222245678999999998742
Q ss_pred cccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC-C---CCCCccccCCCcce--eEEEeCCCCHHHHHHHH
Q 013083 313 SKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH-K---EKLDPALLRPGRMD--MHIHMSYCTASVFEQLA 386 (450)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~-~---~~ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~ 386 (450)
....+..+..++|.+. . .+..+|+|+|. | ..++++|.+ ||. ..+.++.|+.+.+..++
T Consensus 217 --------k~~~qeelf~l~N~l~---~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 217 --------KGATQEEFFHTFNSLH---T---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred --------ChhhHHHHHHHHHHHH---H---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHH
Confidence 1122333444444332 2 22346666654 4 357799999 885 88999999999999999
Q ss_pred HHHhCccCCCcHHHHHH-HHhcCCCCHHHHHH
Q 013083 387 FNYLGISHHHLFEQIEE-MLMKVNVTPAEVAG 417 (450)
Q Consensus 387 ~~~l~~~~~~l~~ei~~-l~~~~~~spa~i~~ 417 (450)
+......+..+.+++.. ++.+..-...++.+
T Consensus 281 ~~k~~~~~~~l~~evl~~la~~~~~dir~L~g 312 (445)
T PRK12422 281 ERKAEALSIRIEETALDFLIEALSSNVKSLLH 312 (445)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 98876655555555444 33433333444433
No 141
>PHA02244 ATPase-like protein
Probab=99.33 E-value=1.7e-11 Score=123.36 Aligned_cols=139 Identities=21% Similarity=0.295 Sum_probs=91.5
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc----c----CCchh
Q 013083 212 LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD----V----QSNSD 283 (450)
Q Consensus 212 ~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~----~----~~~~~ 283 (450)
+.....+.....+..++.. +.++||+||||||||++|++||..++.+++.++... + .....
T Consensus 100 g~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~ 168 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGK 168 (383)
T ss_pred CCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccc
Confidence 3334444445555566653 357999999999999999999999999999887321 0 00111
Q ss_pred HH--HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-------ccCCCCeEEEEEcCC
Q 013083 284 LR--SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-------SCCSEGRIIIFTTNH 354 (450)
Q Consensus 284 L~--~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-------~~~~~~~iiI~TTN~ 354 (450)
+. .++....++.+|+||||+.+.+ .++..|...++... .....+..+|+|+|.
T Consensus 169 ~~dgpLl~A~~~GgvLiLDEId~a~p------------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 169 FHETPFYEAFKKGGLFFIDEIDASIP------------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ccchHHHHHhhcCCEEEEeCcCcCCH------------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 11 2334456789999999997632 23344444443111 112345688999997
Q ss_pred C-----------CCCCccccCCCcceeEEEeCCCCHHHH
Q 013083 355 K-----------EKLDPALLRPGRMDMHIHMSYCTASVF 382 (450)
Q Consensus 355 ~-----------~~ld~aLlrpgR~d~~I~~~~p~~~~r 382 (450)
+ ..+++|++. ||- +|++++|+..+.
T Consensus 231 ~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 231 LGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKIEH 266 (383)
T ss_pred CccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHHHH
Confidence 3 568999999 994 699999985443
No 142
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5.8e-11 Score=118.96 Aligned_cols=148 Identities=17% Similarity=0.290 Sum_probs=109.0
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC--------CcEEEEecCc
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK--------FDIYDLDLTD 277 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~--------~~~~~l~~~~ 277 (450)
+|++++|.+.+++.+...+. . ...+..|||+||+|+|||++|+++|+.+. .+++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~----~--------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII----K--------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH----c--------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999998888777652 1 12256899999999999999999999762 1344443311
Q ss_pred c--CCchhHHHHHhcC---C---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE
Q 013083 278 V--QSNSDLRSLLLSM---P---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII 349 (450)
Q Consensus 278 ~--~~~~~L~~l~~~~---~---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI 349 (450)
- -+-+.++.+.... + +.-|++||++|.+- ....+.||..++.. +++.++|
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------------~~a~naLLK~LEep----p~~t~~i 127 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------------EQAQNAFLKTIEEP----PKGVFII 127 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 1 1334577766532 2 45699999998762 23567889888863 5677888
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 350 FTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 350 ~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
++|++++.+.|++++ |+. +++|+.++.++....+...+
T Consensus 128 l~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 128 LLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHh
Confidence 888899999999999 885 69999999998877776544
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=3e-12 Score=112.58 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=75.0
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhc---------------CCCceEEEEEcccccccc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLS---------------MPSRSMLVIEDIDCSITL 308 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~---------------~~~~sIlviDdiD~l~~~ 308 (450)
++||+||||||||++++.+|..++.+++.+.++...+..+|.....- ..+++|++||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 58999999999999999999999999999999987665555332211 1257899999998652
Q ss_pred cccCcccccCCCCCCchhhHHhHHHHhhccccc----------CCC-----CeEEEEEcCCCC----CCCccccCCCcc
Q 013083 309 ENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC----------CSE-----GRIIIFTTNHKE----KLDPALLRPGRM 368 (450)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~----------~~~-----~~iiI~TTN~~~----~ld~aLlrpgR~ 368 (450)
..++..|+..++.-.-. ... +..||+|+|..+ .+++||++ ||
T Consensus 79 ----------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 34556666666532110 011 378999999988 89999999 87
No 144
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.30 E-value=2.2e-11 Score=122.41 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=102.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------CcE--EEE
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK-------FDI--YDL 273 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~-------~~~--~~l 273 (450)
.|.+|+.++|.++.++.+.-.+. .. -..++||+||||||||++++++|+.+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~----------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP----------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc----------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 47789999999999887754321 10 024799999999999999999999982 211 111
Q ss_pred ecC---------c-------------------cCCchhHHHHHhc-----------CCCceEEEEEcccccccccccCcc
Q 013083 274 DLT---------D-------------------VQSNSDLRSLLLS-----------MPSRSMLVIEDIDCSITLENRDSK 314 (450)
Q Consensus 274 ~~~---------~-------------------~~~~~~L~~l~~~-----------~~~~sIlviDdiD~l~~~~~~~~~ 314 (450)
.+. . +-..-.+...+.. ....++|++|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 000 0 0000111111111 1234699999998763
Q ss_pred cccCCCCCCchhhHHhHHHHhhccc---------ccCCCCeEEEEEcCCCC-CCCccccCCCcceeEEEeCCCCH-HHHH
Q 013083 315 DQAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGRIIIFTTNHKE-KLDPALLRPGRMDMHIHMSYCTA-SVFE 383 (450)
Q Consensus 315 ~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~iiI~TTN~~~-~ld~aLlrpgR~d~~I~~~~p~~-~~r~ 383 (450)
..+.+.|++.|+.-. ...+...++++|+|..+ .++++|+. ||.+++.+++|.. +++.
T Consensus 142 ----------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~ 209 (334)
T PRK13407 142 ----------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRV 209 (334)
T ss_pred ----------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 346777888775321 11234467777888654 58999999 9999999999987 8888
Q ss_pred HHHHHHhC
Q 013083 384 QLAFNYLG 391 (450)
Q Consensus 384 ~l~~~~l~ 391 (450)
+++.+...
T Consensus 210 ~il~~~~~ 217 (334)
T PRK13407 210 EVIRRRDA 217 (334)
T ss_pred HHHHHhhc
Confidence 99987543
No 145
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.29 E-value=4.6e-11 Score=110.73 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=89.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC------------------------cEEEEecCcc-CCchhHHHHHhcC-----
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF------------------------DIYDLDLTDV-QSNSDLRSLLLSM----- 291 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~------------------------~~~~l~~~~~-~~~~~L~~l~~~~----- 291 (450)
+..||||||||+|||++++++|+.+.. ++..++.... ..-+.++.++..+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 468999999999999999999999732 2333332221 1234555554433
Q ss_pred -CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q 013083 292 -PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDM 370 (450)
Q Consensus 292 -~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~ 370 (450)
..+-|++|||+|.+.. ...+.||..|+.. +...++|++||.+..+.+++.+ |+.
T Consensus 94 ~~~~kviiide~~~l~~------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE------------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred cCCeEEEEEechhhhCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hcE-
Confidence 2467999999998732 3456788888763 3567788888888999999999 774
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 013083 371 HIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~ 389 (450)
.++++.|+.++...++...
T Consensus 149 ~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc
Confidence 6999999999987777654
No 146
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=1.3e-10 Score=117.28 Aligned_cols=130 Identities=26% Similarity=0.293 Sum_probs=91.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhH------HHH------HhcCCC---c---eEEEEEccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDL------RSL------LLSMPS---R---SMLVIEDID 303 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L------~~l------~~~~~~---~---sIlviDdiD 303 (450)
.+.+||-||||||||++|+++|..++.+++.++|+.....+++ ... +.-.+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4689999999999999999999999999999999976433222 111 111111 2 399999998
Q ss_pred ccccccccCcccccCCCCCCchhhHHhHHHHhhccc--------ccCCCCeEEEEEcC-----CCCCCCccccCCCccee
Q 013083 304 CSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW--------SCCSEGRIIIFTTN-----HKEKLDPALLRPGRMDM 370 (450)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~--------~~~~~~~iiI~TTN-----~~~~ld~aLlrpgR~d~ 370 (450)
... ..+.+.||..|+... -..+...++|+|+| ....+++|+++ ||-+
T Consensus 123 ra~------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 123 RAP------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred cCC------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 652 346777777776411 11124567888889 34568999999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHhC
Q 013083 371 HIHMSYC-TASVFEQLAFNYLG 391 (450)
Q Consensus 371 ~I~~~~p-~~~~r~~l~~~~l~ 391 (450)
.++++|| ...+...+......
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEecCCCCchHHHHHHHHhCcc
Confidence 9999999 55555555555444
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.4e-11 Score=127.79 Aligned_cols=160 Identities=21% Similarity=0.342 Sum_probs=121.6
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~~~~~~L 284 (450)
+.++|+++..+.|.+.+.....+= ....+| -.++||.||+|+|||-||+++|..+. -.++.+|+|+......+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL---~dp~rP-igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGL---GDPNRP-IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCC---CCCCCC-ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 567888888888888776554320 111111 23688999999999999999999996 88999999999877777
Q ss_pred HHHHhcCC------------------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC--
Q 013083 285 RSLLLSMP------------------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE-- 344 (450)
Q Consensus 285 ~~l~~~~~------------------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~-- 344 (450)
.+++...+ ..|||++|||+.. ....++-||+.||.-.-..+.
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 77765542 3589999999854 346889999999854333232
Q ss_pred -----CeEEEEEcCCC----------------------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 345 -----GRIIIFTTNHK----------------------------EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 345 -----~~iiI~TTN~~----------------------------~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+.|||||||-- ..+.|+++. |+|-+|.|...+.+...+|+..++.
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 35999999842 013577777 9999999999999999999998874
No 148
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.25 E-value=1.1e-10 Score=119.25 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=51.9
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCC-CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGK-AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
..++|+++.|+.+...+.....+......... -.+.++||+||||||||++|+++|+.++.+++.++++.+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 34899999999998777543222111111111 124789999999999999999999999999999988755
No 149
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.3e-10 Score=130.52 Aligned_cols=161 Identities=17% Similarity=0.274 Sum_probs=112.3
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchh
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSD 283 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 283 (450)
++.++|++...+.|...+......-. ..++| ...+||+||||||||++|++||+.+ +.+++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~~~p-~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DPNRP-IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CCCCC-CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 56788999998888888865532100 00111 1358999999999999999999987 45788999887754333
Q ss_pred HHHHHh------------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-cc---
Q 013083 284 LRSLLL------------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SC--- 341 (450)
Q Consensus 284 L~~l~~------------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~--- 341 (450)
..+++. .....+||+||||+.+- ....+.|++.++.-. ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------------~~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------------PDVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------------HHHHHHHHHHHhhCceecCCc
Confidence 333331 11234899999998662 235677777775321 10
Q ss_pred ---CCCCeEEEEEcCCC-------------------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 342 ---CSEGRIIIFTTNHK-------------------------EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 342 ---~~~~~iiI~TTN~~-------------------------~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.-.+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+....|++.++.
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 01345889999972 235578888 9999999999999999999998874
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.24 E-value=2.8e-10 Score=127.61 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=110.4
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCc-eeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchh
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKR-GYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSD 283 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~r-giLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 283 (450)
+.++|+++..+.|.+.+.....+-. ..+ .+. .+||+||||||||.+|+++|..+ ...++.++++++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~---~~~--~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE---DPR--KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC---CCC--CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh
Confidence 5688999999999888876532100 001 133 48999999999999999999998 45788899887633222
Q ss_pred -------------------HHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC-
Q 013083 284 -------------------LRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS- 343 (450)
Q Consensus 284 -------------------L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~- 343 (450)
|...+.. ...+||+|||||..- ....+.|+..+|.-.-..+
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~------------------~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH------------------PDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred hccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC------------------HHHHHHHHHHhhcceeecCC
Confidence 3333333 467899999998652 2456677777764321111
Q ss_pred ------CCeEEEEEcCCCC-----------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q 013083 344 ------EGRIIIFTTNHKE-----------------------------KLDPALLRPGRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 344 ------~~~iiI~TTN~~~-----------------------------~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
.+.+||+|||-.. .+.|+|+. |++ .|.|..++.+...+|+..
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~ 778 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRL 778 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHH
Confidence 3579999998521 15677888 998 689999999999999998
Q ss_pred HhC
Q 013083 389 YLG 391 (450)
Q Consensus 389 ~l~ 391 (450)
.+.
T Consensus 779 ~L~ 781 (852)
T TIGR03345 779 KLD 781 (852)
T ss_pred HHH
Confidence 774
No 151
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.24 E-value=1.6e-10 Score=118.00 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=51.5
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhh-CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRV-GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
-++|+++.|+.+.-.+.....+....... +...++++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 37899999999877665432222111111 11235899999999999999999999999999999997644
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=2.8e-10 Score=128.22 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=112.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L 284 (450)
..++|++...+.|.+.+......-. ... .+...+||+||||||||++|++||..+ +.+++.++++.+......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~-~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPN-RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCC-CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 5688999999988888775432100 000 112458999999999999999999987 568999999877443333
Q ss_pred HHHHh------------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-cc----
Q 013083 285 RSLLL------------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SC---- 341 (450)
Q Consensus 285 ~~l~~------------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~---- 341 (450)
..++. .....+||+|||||.+- ....+.||+.++.-. ..
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------------~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------------PDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------------HHHHHHHHHHHhcCceecCCCe
Confidence 32221 12345799999998662 346677888875321 10
Q ss_pred --CCCCeEEEEEcCCCC-------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 342 --CSEGRIIIFTTNHKE-------------------------KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 342 --~~~~~iiI~TTN~~~-------------------------~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.-.+.+||+|||... .+.|+|+. |+|.++.|.+++.+....|+..++.
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 014568999999731 14467777 9999999999999999999988764
No 153
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.22 E-value=8.5e-11 Score=118.57 Aligned_cols=155 Identities=19% Similarity=0.303 Sum_probs=102.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-------cEE-----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-------DIY----- 271 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-------~~~----- 271 (450)
..+|..++|+++.|..++..+.. +. ..|+||.||+|||||++++++++.+.. +|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~----p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID----PK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC----CC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 44799999999999988775543 11 358999999999999999999888731 111
Q ss_pred -----------------------EEecCcc---CCch------hHHHHHhc-----------CCCceEEEEEcccccccc
Q 013083 272 -----------------------DLDLTDV---QSNS------DLRSLLLS-----------MPSRSMLVIEDIDCSITL 308 (450)
Q Consensus 272 -----------------------~l~~~~~---~~~~------~L~~l~~~-----------~~~~sIlviDdiD~l~~~ 308 (450)
.+.+..+ .+++ ++.+.+.. ....++|++|||+.+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 0000000 0111 12222221 12468999999987732
Q ss_pred cccCcccccCCCCCCchhhHHhHHHHhhc---------ccccCCCCeEEEEEcCCCC-CCCccccCCCcceeEEEeCCCC
Q 013083 309 ENRDSKDQAGHNQGDNKVTLSGLLNFIDG---------LWSCCSEGRIIIFTTNHKE-KLDPALLRPGRMDMHIHMSYCT 378 (450)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~LL~~ldg---------~~~~~~~~~iiI~TTN~~~-~ld~aLlrpgR~d~~I~~~~p~ 378 (450)
.+.+.|+..|+. .....+...++|+|.|..+ .+.++|+. ||.+++.+++|+
T Consensus 159 -----------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~ 219 (350)
T CHL00081 159 -----------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVK 219 (350)
T ss_pred -----------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCC
Confidence 456667777753 1111223345566666554 59999999 999999999998
Q ss_pred -HHHHHHHHHHHhC
Q 013083 379 -ASVFEQLAFNYLG 391 (450)
Q Consensus 379 -~~~r~~l~~~~l~ 391 (450)
.+.+.+|++....
T Consensus 220 ~~~~e~~il~~~~~ 233 (350)
T CHL00081 220 DPELRVKIVEQRTS 233 (350)
T ss_pred ChHHHHHHHHhhhc
Confidence 5889999987643
No 154
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=1.9e-10 Score=124.14 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=125.6
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
..|.. ...|.++++|++.++..+++..++..... +....+.++|+||||||||++++++|+.++..++
T Consensus 72 ~pW~e----KyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 72 EPWVE----KYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CchHH----HhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 46877 89999999999999988887776654322 1223456999999999999999999999987654
Q ss_pred E-Ee---cCc--------------c----CCchhHHHHHhcC------------CCceEEEEEcccccccccccCccccc
Q 013083 272 D-LD---LTD--------------V----QSNSDLRSLLLSM------------PSRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 272 ~-l~---~~~--------------~----~~~~~L~~l~~~~------------~~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
+ .+ +.. + ...+.+..++..+ ..+.||+||||+.+..
T Consensus 140 Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~---------- 209 (637)
T TIGR00602 140 EWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY---------- 209 (637)
T ss_pred HHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch----------
Confidence 4 11 100 0 1123333333322 2567999999997642
Q ss_pred CCCCCCchhhHHhHHH-HhhcccccCCCCeEEEEEcCCCC--------------CCCccccCCCcceeEEEeCCCCHHHH
Q 013083 318 GHNQGDNKVTLSGLLN-FIDGLWSCCSEGRIIIFTTNHKE--------------KLDPALLRPGRMDMHIHMSYCTASVF 382 (450)
Q Consensus 318 ~~~~~~~~~~l~~LL~-~ldg~~~~~~~~~iiI~TTN~~~--------------~ld~aLlrpgR~d~~I~~~~p~~~~r 382 (450)
. ....+..+|. .... . +.-.+|+++|..+. .|.++++...|+. +|.|...+..+.
T Consensus 210 ----r-~~~~lq~lLr~~~~e---~-~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l 279 (637)
T TIGR00602 210 ----R-DTRALHEILRWKYVS---I-GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIM 279 (637)
T ss_pred ----h-hHHHHHHHHHHHhhc---C-CCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHH
Confidence 1 1123444444 2111 1 22224444442221 1336777534554 699999999998
Q ss_pred HHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 013083 383 EQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEISLQGIVKFL 438 (450)
Q Consensus 383 ~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~al~~l~~~l 438 (450)
+..+...+..+.... .....+...++.+.+.....+|++.||..|.-+.
T Consensus 280 ~K~L~rIl~~E~~~~-------~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 280 KKFLNRIVTIEAKKN-------GEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHHHHhhhhcc-------ccccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 888877764331111 0111122234445555556789999999887653
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=5.1e-10 Score=125.70 Aligned_cols=160 Identities=20% Similarity=0.268 Sum_probs=109.6
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L 284 (450)
+.++|+++..+.|.+.+......- ...++| ...+||+||||||||++|+++|+.+ +.+++.++++++.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 567898888888877775432210 001111 2358999999999999999999987 467888988876433222
Q ss_pred HHHHh------------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-----
Q 013083 285 RSLLL------------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC----- 341 (450)
Q Consensus 285 ~~l~~------------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~----- 341 (450)
.+++. .....+||+|||||.+- ....+.|+..+|.-.-.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~------------------~~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------------PDIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC------------------HHHHHHHHHHhccCceecCCCc
Confidence 22221 11235899999999762 34677888888742211
Q ss_pred --CCCCeEEEEEcCCCCC-------------------------------------CCccccCCCcceeEEEeCCCCHHHH
Q 013083 342 --CSEGRIIIFTTNHKEK-------------------------------------LDPALLRPGRMDMHIHMSYCTASVF 382 (450)
Q Consensus 342 --~~~~~iiI~TTN~~~~-------------------------------------ld~aLlrpgR~d~~I~~~~p~~~~r 382 (450)
.-.+.+||+|||.... +.|+|+. |+|.+|.|...+.++.
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l 724 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDV 724 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHH
Confidence 0145789999985311 2356677 9999999999999999
Q ss_pred HHHHHHHhC
Q 013083 383 EQLAFNYLG 391 (450)
Q Consensus 383 ~~l~~~~l~ 391 (450)
.+|+...+.
T Consensus 725 ~~Iv~~~l~ 733 (821)
T CHL00095 725 WEIAEIMLK 733 (821)
T ss_pred HHHHHHHHH
Confidence 999988774
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.4e-09 Score=110.98 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=110.4
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc-----EEEEecCccCCch
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD-----IYDLDLTDVQSNS 282 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~-----~~~l~~~~~~~~~ 282 (450)
+.+..-+++..++...+..++.+.. +.++++|||||||||..++.++.++... ++.+||....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 4488899999999998888776533 4569999999999999999999999544 8899998875422
Q ss_pred h-HHHHH------------------------hcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhc
Q 013083 283 D-LRSLL------------------------LSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG 337 (450)
Q Consensus 283 ~-L~~l~------------------------~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg 337 (450)
. +.+++ .......||++||+|.+.. . ....+-.|+...+.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~--------------~-~~~~LY~L~r~~~~ 152 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD--------------K-DGEVLYSLLRAPGE 152 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc--------------c-cchHHHHHHhhccc
Confidence 2 12222 2223467999999999964 1 11345555544333
Q ss_pred ccccCCCCeEEEEEcCCC---CCCCccccCCCcc-eeEEEeCCCCHHHHHHHHHHHhC
Q 013083 338 LWSCCSEGRIIIFTTNHK---EKLDPALLRPGRM-DMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 338 ~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~-d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.+|...|+.....
T Consensus 153 ~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 153 N----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred c----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 2 2456788888876 568888876 33 24489999999999999997664
No 157
>PRK08181 transposase; Validated
Probab=99.18 E-value=7.4e-11 Score=115.37 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=91.0
Q ss_pred HHHHhhHHHHHHHHHHHHcCceeEEEecCCCcccccccccCCCCCCcccc-----cChHHHHHHHHHHHHHhcChhHHhh
Q 013083 162 VLNLYLPHVLEKAKAIKEENHMVKLHTVEYGCWDANDMVLKHPMNFNTLA-----LDSELKKAIMEDLDNFMNGKEYYTR 236 (450)
Q Consensus 162 vl~~yl~~vl~~~~~~~~~~r~~~l~~~~~~~w~~~~~~~~~p~~f~~l~-----~~~~~k~~i~~~l~~~l~~~~~~~~ 236 (450)
-...||..+++.....+++++..+.....+ +..+.+|+++. +.+.....-+..+..|+..
T Consensus 41 ~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~---------~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~------ 105 (269)
T PRK08181 41 PAARFLAAIAEHELAERARRRIERHLAEAH---------LPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWLAK------ 105 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHHhc------
Confidence 345688888887766666554432322221 22234444442 2222222222333345432
Q ss_pred hCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC-------CchhHHHHHhcCCCceEEEEEcccccc
Q 013083 237 VGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ-------SNSDLRSLLLSMPSRSMLVIEDIDCSI 306 (450)
Q Consensus 237 ~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~-------~~~~L~~l~~~~~~~sIlviDdiD~l~ 306 (450)
+.+++|+||||||||+|+.|+|+++ |+.++.+...++. .+..+.+.+....+..+|+|||++...
T Consensus 106 -----~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 -----GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred -----CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 4689999999999999999999866 6777777765542 123445566666788999999998653
Q ss_pred cccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 307 TLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
. .......+..+++...+ ..-+|+|||.+
T Consensus 181 ~-------------~~~~~~~Lf~lin~R~~-------~~s~IiTSN~~ 209 (269)
T PRK08181 181 K-------------DQAETSVLFELISARYE-------RRSILITANQP 209 (269)
T ss_pred C-------------CHHHHHHHHHHHHHHHh-------CCCEEEEcCCC
Confidence 2 12223345555553322 12478888876
No 158
>PRK08116 hypothetical protein; Validated
Probab=99.18 E-value=1.5e-10 Score=113.37 Aligned_cols=148 Identities=20% Similarity=0.337 Sum_probs=88.1
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC--
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS-- 280 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~-- 280 (450)
+|++....++. +.....+..+... |.... ...+|++||||||||||+|+.|||+++ +.+++.++..++..
T Consensus 83 tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 83 TFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred chhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 67776644443 3233444444432 11111 124689999999999999999999987 77888888765421
Q ss_pred --------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 281 --------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 281 --------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
......++....+..+|+|||+.... ........|.+.++.... .+..+|+||
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~----------------~t~~~~~~l~~iin~r~~---~~~~~IiTs 218 (268)
T PRK08116 158 KSTYKSSGKEDENEIIRSLVNADLLILDDLGAER----------------DTEWAREKVYNIIDSRYR---KGLPTIVTT 218 (268)
T ss_pred HHHHhccccccHHHHHHHhcCCCEEEEecccCCC----------------CCHHHHHHHHHHHHHHHH---CCCCEEEEC
Confidence 11223445555667899999996421 111233445555555432 334578888
Q ss_pred CCC-CC----CCccccCCCcc---eeEEEeCCCCH
Q 013083 353 NHK-EK----LDPALLRPGRM---DMHIHMSYCTA 379 (450)
Q Consensus 353 N~~-~~----ld~aLlrpgR~---d~~I~~~~p~~ 379 (450)
|.+ +. ++.++.+ |+ ...|.++.++.
T Consensus 219 N~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 219 NLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 865 22 5667776 63 34466666664
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.18 E-value=8.7e-11 Score=113.25 Aligned_cols=138 Identities=21% Similarity=0.328 Sum_probs=90.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
..++.+|+++....+..+.++..+..|..... . ...+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~---~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEFD---G----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhhc---c----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 45677899997766555566676766664311 1 12589999999999999999999998 67788887766
Q ss_pred cCC---------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE
Q 013083 278 VQS---------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII 348 (450)
Q Consensus 278 ~~~---------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii 348 (450)
+.. +....+++....+..+|+|||+++... .......+..+++.- . ....-+
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~-------------s~~~~~~l~~Ii~~R---y---~~~~~t 198 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE-------------SRYEKVIINQIVDRR---S---SSKRPT 198 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC-------------CHHHHHHHHHHHHHH---H---hCCCCE
Confidence 521 223345666667889999999987521 122334555555532 1 123568
Q ss_pred EEEcCCC-----CCCCccccC
Q 013083 349 IFTTNHK-----EKLDPALLR 364 (450)
Q Consensus 349 I~TTN~~-----~~ld~aLlr 364 (450)
|+|||.. +.++..++.
T Consensus 199 iitSNl~~~~l~~~~g~ri~s 219 (244)
T PRK07952 199 GMLTNSNMEEMTKLLGERVMD 219 (244)
T ss_pred EEeCCCCHHHHHHHhChHHHH
Confidence 8899865 234455555
No 160
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=9.2e-10 Score=110.99 Aligned_cols=153 Identities=21% Similarity=0.265 Sum_probs=100.3
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC-------CcEE-------
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK-------FDIY------- 271 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~-------~~~~------- 271 (450)
+|..++|+++.|..++-.+... ...+++|.|+||||||++++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998875544321 135799999999999999999998772 1111
Q ss_pred ------E------------------EecCc------cCCchhHHHHHhc-----------CCCceEEEEEcccccccccc
Q 013083 272 ------D------------------LDLTD------VQSNSDLRSLLLS-----------MPSRSMLVIEDIDCSITLEN 310 (450)
Q Consensus 272 ------~------------------l~~~~------~~~~~~L~~l~~~-----------~~~~sIlviDdiD~l~~~~~ 310 (450)
. +++.. +...-.+.+.+.. ...+.+|+||||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 11110 1111122222211 1245899999999763
Q ss_pred cCcccccCCCCCCchhhHHhHHHHhhcc---------cccCCCCeEEEEEcCCCC-CCCccccCCCcceeEEEeCCCCH-
Q 013083 311 RDSKDQAGHNQGDNKVTLSGLLNFIDGL---------WSCCSEGRIIIFTTNHKE-KLDPALLRPGRMDMHIHMSYCTA- 379 (450)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~LL~~ldg~---------~~~~~~~~iiI~TTN~~~-~ld~aLlrpgR~d~~I~~~~p~~- 379 (450)
..+.+.|++.|+.- ....+...++|+|+|..+ .++++|+. ||.+++.+++|..
T Consensus 145 --------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ 208 (337)
T TIGR02030 145 --------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDV 208 (337)
T ss_pred --------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCH
Confidence 24566777777431 111223456667777554 68999999 9999999999976
Q ss_pred HHHHHHHHHHhC
Q 013083 380 SVFEQLAFNYLG 391 (450)
Q Consensus 380 ~~r~~l~~~~l~ 391 (450)
+++.+|+++...
T Consensus 209 eer~eIL~~~~~ 220 (337)
T TIGR02030 209 ELRVEIVERRTE 220 (337)
T ss_pred HHHHHHHHhhhh
Confidence 888888887543
No 161
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-10 Score=121.09 Aligned_cols=180 Identities=25% Similarity=0.345 Sum_probs=132.0
Q ss_pred cChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC------CchhHHHHHhcCC--CceEEEEE
Q 013083 229 NGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------SNSDLRSLLLSMP--SRSMLVIE 300 (450)
Q Consensus 229 ~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------~~~~L~~l~~~~~--~~sIlviD 300 (450)
..+..++..+...+++++++||||||||++++++|+. +.....++..... +...++.++..+. .++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 3566788889999999999999999999999999999 5555555555442 3556667776654 57999999
Q ss_pred cccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q 013083 301 DIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTAS 380 (450)
Q Consensus 301 diD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~ 380 (450)
++|.+.+.... ..........+.++..+|++. .+. ++++..||.+..+++++++||||+..+.++.|+..
T Consensus 84 ~~~~~~~~~~~-------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 84 EIDALAPKRSS-------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred hhhhcccCccc-------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 99999762222 123445667899999999987 355 88888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHH
Q 013083 381 VFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 381 ~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L 419 (450)
.+.++..................++.. .+++.+++....
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 998877765533222112223333332 356666665444
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.3e-09 Score=109.71 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=94.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC------------------------cEEEEecCcc---CCchhHHHHHhcCC--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF------------------------DIYDLDLTDV---QSNSDLRSLLLSMP-- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~------------------------~~~~l~~~~~---~~~~~L~~l~~~~~-- 292 (450)
+.+|||+||+|+||+++|.++|+.+.. +++.+..... -.-+.++++.....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 468999999999999999999998832 4555543221 13456777655432
Q ss_pred ----CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013083 293 ----SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRM 368 (450)
Q Consensus 293 ----~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~ 368 (450)
..-|++||++|.+- ....+.||..++.- +++.++|++|++++.+.|.+++ |+
T Consensus 102 ~~~~~~kv~iI~~a~~m~------------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMN------------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred cccCCCeEEEECChhhCC------------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hc
Confidence 35588999999872 35678899988873 4678999999999999999999 99
Q ss_pred eeEEEeCCCCHHHHHHHHHHH
Q 013083 369 DMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 369 d~~I~~~~p~~~~r~~l~~~~ 389 (450)
.. +.|+.|+.++....+...
T Consensus 158 ~~-~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 QQ-QACPLPSNEESLQWLQQA 177 (328)
T ss_pred ee-eeCCCcCHHHHHHHHHHh
Confidence 76 999999998877766654
No 163
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.15 E-value=1.2e-09 Score=115.94 Aligned_cols=211 Identities=16% Similarity=0.236 Sum_probs=128.4
Q ss_pred cCCCcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 189 VEYGCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 189 ~~~~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
.+...|.. ...|.+.++|+......++|..++...+. +....+-+||+||||||||++++.+|++++.
T Consensus 4 ~~~~~W~~----ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 4 DESEPWVE----KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cccCccch----hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567977 89999999999999888888888876543 2233567889999999999999999999998
Q ss_pred cEEEEe-cCcc----------CC-----------chhHHHH-HhcC-------------CCceEEEEEcccccccccccC
Q 013083 269 DIYDLD-LTDV----------QS-----------NSDLRSL-LLSM-------------PSRSMLVIEDIDCSITLENRD 312 (450)
Q Consensus 269 ~~~~l~-~~~~----------~~-----------~~~L~~l-~~~~-------------~~~sIlviDdiD~l~~~~~~~ 312 (450)
.+.+-. ...+ .+ -..+..+ +... .++.||+|||+-..+.
T Consensus 72 ~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----- 146 (519)
T PF03215_consen 72 EVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----- 146 (519)
T ss_pred eeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc-----
Confidence 887642 2221 00 0111112 1111 2467999999976542
Q ss_pred cccccCCCCCCchhhHHhH-HHHhhcccccCCC-CeEEEEE-c------CCCC--------CCCccccCCCcceeEEEeC
Q 013083 313 SKDQAGHNQGDNKVTLSGL-LNFIDGLWSCCSE-GRIIIFT-T------NHKE--------KLDPALLRPGRMDMHIHMS 375 (450)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L-L~~ldg~~~~~~~-~~iiI~T-T------N~~~--------~ld~aLlrpgR~d~~I~~~ 375 (450)
... ..+..+ ...+.. ... ..|||+| | |... -+++.++...++. +|.|.
T Consensus 147 ---------~~~-~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FN 211 (519)
T PF03215_consen 147 ---------RDT-SRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFN 211 (519)
T ss_pred ---------hhH-HHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEec
Confidence 111 222222 222322 122 4566666 1 1111 3566666544554 48998
Q ss_pred CCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCC--CCHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 013083 376 YCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVN--VTPAEVAGELMKSKCKYAEISLQGIVKFLH 439 (450)
Q Consensus 376 ~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~--~spa~i~~~L~~~~~~~~~~al~~l~~~l~ 439 (450)
+-.....+.-+++.+..+ .. ...... ..+.++.+.+.....+|.+.|+..|+=+..
T Consensus 212 pIa~T~mkKaL~rI~~~E-------~~-~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKKE-------AR-SSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CCCHHHHHHHHHHHHHHH-------hh-hhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 888877776666654322 11 111111 223566677766556899999998886665
No 164
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=1.4e-10 Score=106.12 Aligned_cols=108 Identities=27% Similarity=0.414 Sum_probs=77.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC----cEEEEecCccCC----chhHHHHHhcCC------CceEEEEEccccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF----DIYDLDLTDVQS----NSDLRSLLLSMP------SRSMLVIEDIDCSIT 307 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~----~~~~l~~~~~~~----~~~L~~l~~~~~------~~sIlviDdiD~l~~ 307 (450)
...+||.||+|||||.+|+++|..+.. +++.+|++.+.. ...+..++.... ...||+|||||....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 457999999999999999999999996 999999999987 666666666554 346999999998853
Q ss_pred ccccCcccccCCCCCCchhhHHhHHHHhhcccccCC-------CCeEEEEEcCCCC
Q 013083 308 LENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS-------EGRIIIFTTNHKE 356 (450)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~-------~~~iiI~TTN~~~ 356 (450)
- .+...+.......+.||..+|+-.-... .+.++|+|+|--.
T Consensus 83 ~-------~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S-------NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T-------TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c-------ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1 0001111223567788888875432211 3468999998643
No 165
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.13 E-value=1.4e-09 Score=109.54 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=52.0
Q ss_pred CCc-ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-------cEEEEec
Q 013083 206 NFN-TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-------DIYDLDL 275 (450)
Q Consensus 206 ~f~-~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-------~~~~l~~ 275 (450)
-|+ ++.|.++.++++++++.....+ . ...++.++|+|||||||||+|++||+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQG------L-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhc------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 476 8999999999999888766532 1 123578899999999999999999999976 8998877
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.4e-09 Score=108.95 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=118.3
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-----------------
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF----------------- 268 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~----------------- 268 (450)
.|++++|.+.+++.+...+..- ..+..|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4899999999998887766421 12468999999999999999999998721
Q ss_pred -cEEEEecCcc-C----------------------CchhHHHHHhcC------CCceEEEEEcccccccccccCcccccC
Q 013083 269 -DIYDLDLTDV-Q----------------------SNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAG 318 (450)
Q Consensus 269 -~~~~l~~~~~-~----------------------~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~ 318 (450)
+++.+..... . .-+.++++.... ...-|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233322100 0 012445553332 246799999998772
Q ss_pred CCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH
Q 013083 319 HNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF 398 (450)
Q Consensus 319 ~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 398 (450)
....+.||..|+.. + ..++|++|+.++.|-|++++ |+.. ++|+.++.++..+++......+ ...
T Consensus 138 ------~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rcq~-i~f~~l~~~~~~~~L~~~~~~~--~~~ 201 (314)
T PRK07399 138 ------EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RCQI-IPFYRLSDEQLEQVLKRLGDEE--ILN 201 (314)
T ss_pred ------HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hceE-EecCCCCHHHHHHHHHHhhccc--cch
Confidence 24567899988864 3 45788888999999999999 8854 9999999999888888654322 111
Q ss_pred HHHHHHHhcCCCCHHHHHHHH
Q 013083 399 EQIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 399 ~ei~~l~~~~~~spa~i~~~L 419 (450)
.+...++...+-+|.+..+.+
T Consensus 202 ~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 202 INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHHHHHHHHcCCCHHHHHHHH
Confidence 223455555556666655544
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.4e-09 Score=109.83 Aligned_cols=146 Identities=20% Similarity=0.297 Sum_probs=103.2
Q ss_pred CCccccc-ChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC----------------
Q 013083 206 NFNTLAL-DSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF---------------- 268 (450)
Q Consensus 206 ~f~~l~~-~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~---------------- 268 (450)
.|++|.| .+.+.+.+...+. .. ..+..||||||+|+||+++|.++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----KN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677877 6666666655442 11 12568999999999999999999998621
Q ss_pred --------cEEEEecCcc-CCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH
Q 013083 269 --------DIYDLDLTDV-QSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN 333 (450)
Q Consensus 269 --------~~~~l~~~~~-~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 333 (450)
++..+....- -.-+.++.+....+ ..-|++|||+|.+- ....+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------------~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------------ASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------------HHHHHHHHH
Confidence 2333332211 12345666554322 45699999998772 346678999
Q ss_pred HhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q 013083 334 FIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 334 ~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
.|+.. ++..++|++|+.++++.|++++ |+.. ++++.|+.++....++.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILS--RCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHh--hcee-eeCCCCCHHHHHHHHHH
Confidence 88864 5678888899999999999999 8855 99999999887766654
No 168
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.12 E-value=3.3e-10 Score=105.92 Aligned_cols=190 Identities=15% Similarity=0.236 Sum_probs=121.0
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-C----
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-K---- 267 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~---- 267 (450)
.|.. .++|..+.+++|.++..+.+.-. ... |- -.++++.|||||||||-+.++|.++ |
T Consensus 16 ~wVe----KYrP~~l~dIVGNe~tv~rl~vi----a~~-------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~k 78 (333)
T KOG0991|consen 16 PWVE----KYRPSVLQDIVGNEDTVERLSVI----AKE-------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYK 78 (333)
T ss_pred hHHH----hhCchHHHHhhCCHHHHHHHHHH----HHc-------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhh
Confidence 4755 89999999999999887665332 221 11 2379999999999999999999997 3
Q ss_pred CcEEEEecCccCCchhHHHH---HhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 268 FDIYDLDLTDVQSNSDLRSL---LLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 268 ~~~~~l~~~~~~~~~~L~~l---~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
--+.+++.++-..-+-++.- |... ...-||++||.|++-. ..+. .|-..|+-
T Consensus 79 e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------------gAQQ---AlRRtMEi- 139 (333)
T KOG0991|consen 79 EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------------GAQQ---ALRRTMEI- 139 (333)
T ss_pred hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------------HHHH---HHHHHHHH-
Confidence 34678888887655555443 3322 1346999999997732 1122 23333332
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHH
Q 013083 339 WSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGE 418 (450)
Q Consensus 339 ~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~ 418 (450)
++ ...-+.++||..+++-+.+.+ |+.. +.+...+.++...-+.... -.+...+|+.-+...
T Consensus 140 yS---~ttRFalaCN~s~KIiEPIQS--RCAi-LRysklsd~qiL~Rl~~v~-------------k~Ekv~yt~dgLeai 200 (333)
T KOG0991|consen 140 YS---NTTRFALACNQSEKIIEPIQS--RCAI-LRYSKLSDQQILKRLLEVA-------------KAEKVNYTDDGLEAI 200 (333)
T ss_pred Hc---ccchhhhhhcchhhhhhhHHh--hhHh-hhhcccCHHHHHHHHHHHH-------------HHhCCCCCcchHHHh
Confidence 22 234578899999998888888 7755 6666666665443222211 123455666555555
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 013083 419 LMKSKCKYAEISLQGIVKFL 438 (450)
Q Consensus 419 L~~~~~~~~~~al~~l~~~l 438 (450)
+..+ .+|...|+++|+.-+
T Consensus 201 ifta-~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 201 IFTA-QGDMRQALNNLQSTV 219 (333)
T ss_pred hhhc-cchHHHHHHHHHHHh
Confidence 5443 456777777766544
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.7e-09 Score=108.04 Aligned_cols=141 Identities=21% Similarity=0.279 Sum_probs=100.6
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---------------------
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK--------------------- 267 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~--------------------- 267 (450)
.+++.+.....+..+...+-+ .+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 345555555665555543321 123799999999999999999999986
Q ss_pred ---CcEEEEecCccCC----chhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHH
Q 013083 268 ---FDIYDLDLTDVQS----NSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNF 334 (450)
Q Consensus 268 ---~~~~~l~~~~~~~----~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ 334 (450)
-+++.++.++... .+.++++..... +.-|++|||+|.+-. ...+.++..
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------------~A~nallk~ 132 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------------DAANALLKT 132 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------------HHHHHHHHH
Confidence 5889999888765 334555544332 356999999998732 355677777
Q ss_pred hhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHH
Q 013083 335 IDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQL 385 (450)
Q Consensus 335 ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l 385 (450)
+..- +.+..+|++||.++.+-+.+.+ |+.. +.|+.|+...+...
T Consensus 133 lEep----~~~~~~il~~n~~~~il~tI~S--Rc~~-i~f~~~~~~~~i~~ 176 (325)
T COG0470 133 LEEP----PKNTRFILITNDPSKILPTIRS--RCQR-IRFKPPSRLEAIAW 176 (325)
T ss_pred hccC----CCCeEEEEEcCChhhccchhhh--ccee-eecCCchHHHHHHH
Confidence 7653 4668899999999999999999 8855 88887665554433
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=7.8e-10 Score=114.15 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=80.5
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc-----EEEEecCcc---
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD-----IYDLDLTDV--- 278 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~-----~~~l~~~~~--- 278 (450)
++++.+.++..+.+...+. .+++++|+||||||||++|+.+|..+... +..+..+.-
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4555555555555544332 14689999999999999999999988431 111221110
Q ss_pred -------C--------CchhHHHHHhcC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhh---
Q 013083 279 -------Q--------SNSDLRSLLLSM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFID--- 336 (450)
Q Consensus 279 -------~--------~~~~L~~l~~~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld--- 336 (450)
. ...-+.+++..+ ..+.+|+||||+..-. ...+..++..|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------------~kiFGel~~lLE~~~ 301 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------------SKVFGEVMMLMEHDK 301 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------------HHhhhhhhhhccccc
Confidence 0 011223333333 3579999999986521 011111111111
Q ss_pred ---------------cccccCCCCeEEEEEcCCCC----CCCccccCCCcceeEEEeCC
Q 013083 337 ---------------GLWSCCSEGRIIIFTTNHKE----KLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 337 ---------------g~~~~~~~~~iiI~TTN~~~----~ld~aLlrpgR~d~~I~~~~ 376 (450)
+-.-..+.+..||+|+|..+ .+|.||+| ||.+ |++..
T Consensus 302 rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 302 RGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred cccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 10012357889999999987 69999999 9977 66654
No 171
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.10 E-value=3.9e-09 Score=106.43 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=104.0
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 282 (450)
.|++++|.....+.+++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 3688999999999999998877653 3589999999999999999998776 46899999998753 3
Q ss_pred hHHH-HHh-----------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-ccCC
Q 013083 283 DLRS-LLL-----------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SCCS 343 (450)
Q Consensus 283 ~L~~-l~~-----------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~~~ 343 (450)
.+.. +|. ....++.|+|||||.+.. .....|++.++.-. ...+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------~~Q~~L~~~l~~~~~~~~g 133 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------LVQEKLLRVIEYGELERVG 133 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------HHHHHHHHHHhcCcEEeCC
Confidence 3333 221 123467899999998832 24455666664321 1101
Q ss_pred ------CCeEEEEEcCCC-------CCCCccccCCCcc-eeEEEeCCCCH--HHHHHHHHHHhC
Q 013083 344 ------EGRIIIFTTNHK-------EKLDPALLRPGRM-DMHIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 344 ------~~~iiI~TTN~~-------~~ld~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
.++.||+||+.. ..+.++|.. |+ ...|++|.... +....|+.+|+.
T Consensus 134 ~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 134 GSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred CCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 135567776643 345567776 77 45677776543 345567777763
No 172
>PRK12377 putative replication protein; Provisional
Probab=99.09 E-value=3.8e-10 Score=109.08 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=82.0
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC-
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS- 280 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~- 280 (450)
.+|++.....+..+.++..+..+... |.. ...+++|+||||||||+|+.|||+++ +..++.+...++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 36777765444444444444444332 111 13689999999999999999999998 56777777665521
Q ss_pred -------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 281 -------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 281 -------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
......++....+..+|+|||++.... .......+..+++ .-.. ...-+|+|||
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~-------------s~~~~~~l~~ii~---~R~~---~~~ptiitSN 204 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE-------------TKNEQVVLNQIID---RRTA---SMRSVGMLTN 204 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC-------------CHHHHHHHHHHHH---HHHh---cCCCEEEEcC
Confidence 112345666777889999999975421 1223334444444 3221 2345788999
Q ss_pred CC-----CCCCccccC
Q 013083 354 HK-----EKLDPALLR 364 (450)
Q Consensus 354 ~~-----~~ld~aLlr 364 (450)
.. +.++.++++
T Consensus 205 l~~~~l~~~~~~ri~d 220 (248)
T PRK12377 205 LNHEAMSTLLGERVMD 220 (248)
T ss_pred CCHHHHHHHhhHHHHH
Confidence 65 234555555
No 173
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.07 E-value=1.8e-10 Score=99.20 Aligned_cols=106 Identities=27% Similarity=0.301 Sum_probs=62.2
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHH--HhcC-------C---CceEEEEEccccccccccc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSL--LLSM-------P---SRSMLVIEDIDCSITLENR 311 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l--~~~~-------~---~~sIlviDdiD~l~~~~~~ 311 (450)
.+||.|+||+|||++|+++|..++..+..++++.....++|.-. +... . -..|+++|||.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 37999999999999999999999999999998743222222211 1110 1 24699999997653
Q ss_pred CcccccCCCCCCchhhHHhHHHHhhcc-------cccCCCCeEEEEEcCCCC-----CCCccccCCCcce
Q 013083 312 DSKDQAGHNQGDNKVTLSGLLNFIDGL-------WSCCSEGRIIIFTTNHKE-----KLDPALLRPGRMD 369 (450)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~LL~~ldg~-------~~~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d 369 (450)
..+.+.||..|..- ....++..+||+|-|..+ .|++|++. ||-
T Consensus 76 -------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 76 -------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp -------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred -------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 35788899888632 223455678888999876 68888888 873
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=2.1e-09 Score=119.04 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=96.9
Q ss_pred eeeeC--CCCCchHHHHHHHHHHc-----CCcEEEEecCccCCchhHHHHHhcC----C----CceEEEEEccccccccc
Q 013083 245 YLLYG--PPGTGKSSLIAAMANHL-----KFDIYDLDLTDVQSNSDLRSLLLSM----P----SRSMLVIEDIDCSITLE 309 (450)
Q Consensus 245 iLL~G--ppGTGKTsla~alA~~l-----~~~~~~l~~~~~~~~~~L~~l~~~~----~----~~sIlviDdiD~l~~~~ 309 (450)
.+..| |++.||||+|.++|+++ +.+++++|+++..+-+.++.++... + +.-|++|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 45568 99999999999999998 5689999999976667787766432 1 23599999999882
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 389 (450)
....+.|+..|+.. +....+|++||+++.+.++|++ |+.. +.|+.|+.++....+...
T Consensus 644 ---------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC~~-i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 644 ---------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCAI-FRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ---------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hceE-EeCCCCCHHHHHHHHHHH
Confidence 23567788888763 3567899999999999999999 8854 999999998887777665
Q ss_pred hC
Q 013083 390 LG 391 (450)
Q Consensus 390 l~ 391 (450)
..
T Consensus 702 ~~ 703 (846)
T PRK04132 702 AE 703 (846)
T ss_pred HH
Confidence 54
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.8e-09 Score=110.30 Aligned_cols=173 Identities=14% Similarity=0.203 Sum_probs=104.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecC
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLT 276 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~ 276 (450)
....+|++++..+.-+... .....+...+ |. ....++||||+|.|||+|++|++++. +..++.+...
T Consensus 81 ~~~ytFdnFv~g~~N~~A~-aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAY-AAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCchhheeeCCchHHHH-HHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3345899987665543322 2222333322 22 24679999999999999999999988 3345555544
Q ss_pred ccCC-------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE
Q 013083 277 DVQS-------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII 349 (450)
Q Consensus 277 ~~~~-------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI 349 (450)
.+.. +..+.++=... +-.+++||||+.+.. ....+..+..++|.+-. . ++ -||
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g-------------k~~~qeefFh~FN~l~~---~--~k-qIv 212 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG-------------KERTQEEFFHTFNALLE---N--GK-QIV 212 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC-------------ChhHHHHHHHHHHHHHh---c--CC-EEE
Confidence 4310 11112222223 566999999998853 12224445555555533 1 23 445
Q ss_pred EEc-CCCCC---CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHH
Q 013083 350 FTT-NHKEK---LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEM 404 (450)
Q Consensus 350 ~TT-N~~~~---ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l 404 (450)
+|+ ..|.. +.|.|.+ ||. ..+++..|+.+.|..++.......+..+.+++...
T Consensus 213 ltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~ 271 (408)
T COG0593 213 LTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEF 271 (408)
T ss_pred EEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 555 45544 5588988 765 56788999999999999986655555555554443
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.06 E-value=1.1e-09 Score=113.88 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=82.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecC-----ccCCchhHHHH-----Hhc-----CCCceEEEEEcccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLT-----DVQSNSDLRSL-----LLS-----MPSRSMLVIEDIDC 304 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~-----~~~~~~~L~~l-----~~~-----~~~~sIlviDdiD~ 304 (450)
..++||+||||||||++|+++|..++. +|..+.+. ++-....+... |.. .....+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 468999999999999999999998753 33333322 11110111111 111 11334899999975
Q ss_pred cccccccCcccccCCCCCCchhhHHhHHHHhhc-ccccC-----CCCeEEEEEcCCCC---CCCccccCCCcceeEEEeC
Q 013083 305 SITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG-LWSCC-----SEGRIIIFTTNHKE---KLDPALLRPGRMDMHIHMS 375 (450)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg-~~~~~-----~~~~iiI~TTN~~~---~ld~aLlrpgR~d~~I~~~ 375 (450)
+ ...+.+.||..|.. ..... -+.+++|++||... ...+|+.. ||-+.|.+|
T Consensus 119 a------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp 178 (498)
T PRK13531 119 A------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLD 178 (498)
T ss_pred C------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECC
Confidence 5 34578889988843 22211 12367788888532 23358999 999999999
Q ss_pred CCC-HHHHHHHHHHH
Q 013083 376 YCT-ASVFEQLAFNY 389 (450)
Q Consensus 376 ~p~-~~~r~~l~~~~ 389 (450)
+|+ .++++.|+...
T Consensus 179 ~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 179 KVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCchHHHHHHHHcc
Confidence 997 56778888764
No 177
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.04 E-value=8.8e-09 Score=110.68 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=104.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS 280 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~ 280 (450)
..+|+.++|.....+++++.+...... ...+||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 357899999999999999988877643 3589999999999999999999986 56999999998843
Q ss_pred chhHHH-HHh-----------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-cc
Q 013083 281 NSDLRS-LLL-----------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SC 341 (450)
Q Consensus 281 ~~~L~~-l~~-----------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~ 341 (450)
..+.. +|. ...++++|||||||.+.. .....|+..++.-. ..
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------------~~Q~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------------AFQAKLLRVLQEGEFER 321 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------------HHHHHHHHHHhcCcEEE
Confidence 33333 222 123467899999998732 24455666664321 11
Q ss_pred CC------CCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhC
Q 013083 342 CS------EGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCT--ASVFEQLAFNYLG 391 (450)
Q Consensus 342 ~~------~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~--~~~r~~l~~~~l~ 391 (450)
.+ -++.+|+||+.. ..+.++|.. |+. ..|.+|... .+....|+..|+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 11 124566666543 223344444 443 467777665 3556677777774
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.03 E-value=2.6e-09 Score=97.43 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=63.2
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHH
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRS 286 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~ 286 (450)
|+|.+...+++++.++..... +..+||+|++||||+.+|++|.+.. +.||+.++|+.+..+..-..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 467777888888888777654 3589999999999999999999976 46999999999854433345
Q ss_pred HHhcC-----------------CCceEEEEEcccccc
Q 013083 287 LLLSM-----------------PSRSMLVIEDIDCSI 306 (450)
Q Consensus 287 l~~~~-----------------~~~sIlviDdiD~l~ 306 (450)
+|... ....+|+||||+.+.
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhH
Confidence 55432 246799999999884
No 179
>PRK06526 transposase; Provisional
Probab=99.02 E-value=3.4e-10 Score=110.03 Aligned_cols=126 Identities=17% Similarity=0.265 Sum_probs=73.7
Q ss_pred HHHHhhHHHHHHHHHHHHcCceeEEEecCCCcccccccccCCCCCCcccccCh--HHHHHHHHHHHHHhcChhHHhhhCC
Q 013083 162 VLNLYLPHVLEKAKAIKEENHMVKLHTVEYGCWDANDMVLKHPMNFNTLALDS--ELKKAIMEDLDNFMNGKEYYTRVGK 239 (450)
Q Consensus 162 vl~~yl~~vl~~~~~~~~~~r~~~l~~~~~~~w~~~~~~~~~p~~f~~l~~~~--~~k~~i~~~l~~~l~~~~~~~~~g~ 239 (450)
-...||..+++.....+++++..+.....+.. .+.+|+++-... ...+..+..+ ...+|...
T Consensus 34 ~~~e~l~~ll~~E~~~R~~~~~~~~lk~a~~p---------~~~~le~fd~~~~~~~~~~~~~~l----~~~~fi~~--- 97 (254)
T PRK06526 34 SHEEFLAACLQREVAARESHGGEGRIRAARFP---------ARKSLEEFDFDHQRSLKRDTIAHL----GTLDFVTG--- 97 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCCChhhccCccCCCcchHHHHHH----hcCchhhc---
Confidence 44568888888887777666555433332222 223333322111 1222222221 12222221
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC-------CchhHHHHHhcCCCceEEEEEccccc
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ-------SNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~-------~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
+.+++|+||||||||+|+.+|+.++ |..++.....++. ....+...+....+..+|||||++..
T Consensus 98 --~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 --KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred --CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999986 6666665554431 12234445555667889999999865
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.02 E-value=1.5e-09 Score=109.43 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=96.5
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHH
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRS 286 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~ 286 (450)
++|.....+.+.+.+...... ...+||+|++||||+++|++|.... +.+|+.++|..+.. ..+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHH
Confidence 356666777777777766543 3579999999999999999998876 46999999998743 33332
Q ss_pred -HHh-----------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-cc------
Q 013083 287 -LLL-----------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SC------ 341 (450)
Q Consensus 287 -l~~-----------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~------ 341 (450)
+|. ....++.|||||||.+.. .....|+..++.-. ..
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------~~Q~~Ll~~l~~~~~~~~g~~~~ 130 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------LVQEKLLRVIEYGEFERVGGSQT 130 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------HHHHHHHHHHHcCcEEecCCCce
Confidence 321 123568999999998732 34455666664321 10
Q ss_pred CCCCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhC
Q 013083 342 CSEGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCT--ASVFEQLAFNYLG 391 (450)
Q Consensus 342 ~~~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~--~~~r~~l~~~~l~ 391 (450)
...++.||++||.. ..+.+.|.. |+. ..|++|... .+....|+..|+.
T Consensus 131 ~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 131 LQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred eccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 01234567777643 234566666 774 456666655 2455567777764
No 181
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=4.2e-09 Score=112.36 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=97.0
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCC--CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEE----ecCccCCch
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKA--WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL----DLTDVQSNS 282 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~--~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l----~~~~~~~~~ 282 (450)
.+.|.+.+|+.++-.+ +.+......-|.. -..++||+|+||||||++++++++......+.. ++..+.. .
T Consensus 204 ~i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-A 279 (509)
T ss_pred cccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-c
Confidence 4567777766664443 2211000001111 123699999999999999999999886544432 2211211 1
Q ss_pred hHHHH----------HhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc---------ccCC
Q 013083 283 DLRSL----------LLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW---------SCCS 343 (450)
Q Consensus 283 ~L~~l----------~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~ 343 (450)
.++.- .......++++|||+|.+-. .....|+..|+.-. ...+
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~------------------~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD------------------SDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCCH------------------HHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 11110 01123578999999998732 34556666664321 1112
Q ss_pred CCeEEEEEcCCCC-------------CCCccccCCCcceeEEEe-CCCCHHHHHHHHHHHhC
Q 013083 344 EGRIIIFTTNHKE-------------KLDPALLRPGRMDMHIHM-SYCTASVFEQLAFNYLG 391 (450)
Q Consensus 344 ~~~iiI~TTN~~~-------------~ld~aLlrpgR~d~~I~~-~~p~~~~r~~l~~~~l~ 391 (450)
....||+|+|..+ .|++++++ |||..+.+ ++|+.+...+|+++.+.
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 3457889999763 58999999 99987655 78999999999988653
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.00 E-value=1.4e-09 Score=118.85 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=103.7
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-------------------
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL------------------- 266 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l------------------- 266 (450)
.|..++|++.++..+.-.+. .+. ..++||.||||||||+++++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 47899999988876644332 111 2479999999999999999999988
Q ss_pred ----------------CCcEEEEecCccC----CchhHHHHHhc-----------CCCceEEEEEcccccccccccCccc
Q 013083 267 ----------------KFDIYDLDLTDVQ----SNSDLRSLLLS-----------MPSRSMLVIEDIDCSITLENRDSKD 315 (450)
Q Consensus 267 ----------------~~~~~~l~~~~~~----~~~~L~~l~~~-----------~~~~sIlviDdiD~l~~~~~~~~~~ 315 (450)
..+|+.+.++... ...++.+.+.. .....||+||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 3566666555321 11223332211 1245799999999873
Q ss_pred ccCCCCCCchhhHHhHHHHhhccc---------ccCCCCeEEEEEcCCC-CCCCccccCCCcceeEEEeCCCC-HHHHHH
Q 013083 316 QAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGRIIIFTTNHK-EKLDPALLRPGRMDMHIHMSYCT-ASVFEQ 384 (450)
Q Consensus 316 ~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~iiI~TTN~~-~~ld~aLlrpgR~d~~I~~~~p~-~~~r~~ 384 (450)
..+...|+..|+.-. .......++|+|+|.. ..+.++|+. ||+++|.++++. .+++.+
T Consensus 140 ---------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~ 208 (633)
T TIGR02442 140 ---------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVE 208 (633)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHH
Confidence 346777888875321 1112346788888854 358899999 999999999875 567778
Q ss_pred HHHHHhC
Q 013083 385 LAFNYLG 391 (450)
Q Consensus 385 l~~~~l~ 391 (450)
++...+.
T Consensus 209 il~~~~~ 215 (633)
T TIGR02442 209 IIRRRLA 215 (633)
T ss_pred HHHHHHh
Confidence 8776543
No 183
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.00 E-value=1.6e-08 Score=110.96 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 282 (450)
+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+.. +.+|+.+||..+..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 5888999998888888888777653 3579999999999999999999876 4699999999985432
Q ss_pred hHHHHHhc--------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-CCC---
Q 013083 283 DLRSLLLS--------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC-CSE--- 344 (450)
Q Consensus 283 ~L~~l~~~--------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~-~~~--- 344 (450)
--.++|.. ..+++.||||||+.+.. .....|+..++.-.-. .+.
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~------------------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP------------------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH------------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 22344432 12467899999998732 2344566665432111 011
Q ss_pred ---CeEEEEEcCCCCCCCccccCCCcc---------eeEEEeCCCCH--HHHHHHHHHHhC
Q 013083 345 ---GRIIIFTTNHKEKLDPALLRPGRM---------DMHIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 345 ---~~iiI~TTN~~~~ld~aLlrpgR~---------d~~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
++.||+||+..- ..+...|+| ...|++|+.-. +....|+..|+.
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 345777777531 122233344 34556655443 345567777764
No 184
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.8e-08 Score=101.70 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=92.4
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcCC-------------------------cEEEEecCc------------------
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLKF-------------------------DIYDLDLTD------------------ 277 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~~-------------------------~~~~l~~~~------------------ 277 (450)
.+.+|||+||+|+||+++|.++|+.+.. +++.+....
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 3579999999999999999999998732 122232110
Q ss_pred -----------cCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 278 -----------VQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 278 -----------~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
.-.-++++.+..... ..-|++||++|.+- ...-+.||..++.-
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------------~~AaNaLLKtLEEP-- 159 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------------VAAANALLKTLEEP-- 159 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------------HHHHHHHHHHhcCC--
Confidence 012245566554432 34589999998772 35678999999863
Q ss_pred cCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q 013083 341 CCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 389 (450)
+++.++|++|++++.|.|.+++ |+ ..+.|+.|+.++..+.+...
T Consensus 160 --p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 --PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 6788999999999999999999 99 56999999999888777653
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=2.3e-09 Score=91.84 Aligned_cols=118 Identities=27% Similarity=0.353 Sum_probs=71.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCc---EEEEecCccCC--------------------chhHHHHHhcCC--CceE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFD---IYDLDLTDVQS--------------------NSDLRSLLLSMP--SRSM 296 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~---~~~l~~~~~~~--------------------~~~L~~l~~~~~--~~sI 296 (450)
+..++|+||||||||++++++|..+... ++.+++..... ....+..+..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3679999999999999999999999775 88887775421 122333333333 3599
Q ss_pred EEEEcccccccccccCcccccCCCCCCchhhHHhH--HHHhhcccccCCCCeEEEEEcCC-CCCCCccccCCCcceeEEE
Q 013083 297 LVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGL--LNFIDGLWSCCSEGRIIIFTTNH-KEKLDPALLRPGRMDMHIH 373 (450)
Q Consensus 297 lviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~L--L~~ldg~~~~~~~~~iiI~TTN~-~~~ld~aLlrpgR~d~~I~ 373 (450)
|+|||++.+... ......... ........ ......+|+++|. ....+..+.+ |++.++.
T Consensus 82 iiiDei~~~~~~--------------~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDA--------------EQEALLLLLEELRLLLLLK--SEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCH--------------HHHHHHHhhhhhHHHHHHH--hcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 999999987530 000000000 00000111 1245678888886 3334444555 8888888
Q ss_pred eCCC
Q 013083 374 MSYC 377 (450)
Q Consensus 374 ~~~p 377 (450)
++.+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 186
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.98 E-value=2e-09 Score=107.36 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=68.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC-
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ- 279 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~- 279 (450)
..+|+++...+..+..+......|+.. |.. | +..+|++|+||||||||+|+.|||+++ |..+..+..+++.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 357777776665555555555566643 111 1 235799999999999999999999998 7777777766541
Q ss_pred ------CchhHHHHHhcCCCceEEEEEccccc
Q 013083 280 ------SNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 280 ------~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
.+..+.+.+....+..+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12345566777778899999999753
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.97 E-value=1.1e-08 Score=92.75 Aligned_cols=111 Identities=22% Similarity=0.334 Sum_probs=81.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC-----------------------CcEEEEecCcc---CCchhHHHHHhcCC---
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK-----------------------FDIYDLDLTDV---QSNSDLRSLLLSMP--- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~-----------------------~~~~~l~~~~~---~~~~~L~~l~~~~~--- 292 (450)
+..+||+||+|+||+++|.++|+.+- .+++.++.... -.-+.++++.....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999871 24666655543 24566777665543
Q ss_pred ---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcce
Q 013083 293 ---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMD 369 (450)
Q Consensus 293 ---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d 369 (450)
..-|++|||+|.+- ....+.||..|+.. +.+.++|++|+.++.+-|.+++ |+.
T Consensus 99 ~~~~~KviiI~~ad~l~------------------~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc~ 154 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLT------------------EEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RCQ 154 (162)
T ss_dssp TTSSSEEEEEETGGGS-------------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TSE
T ss_pred hcCCceEEEeehHhhhh------------------HHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hce
Confidence 35699999999873 35788999999874 5678999999999999999999 884
Q ss_pred eEEEeCCC
Q 013083 370 MHIHMSYC 377 (450)
Q Consensus 370 ~~I~~~~p 377 (450)
. +.|+..
T Consensus 155 ~-i~~~~l 161 (162)
T PF13177_consen 155 V-IRFRPL 161 (162)
T ss_dssp E-EEE---
T ss_pred E-EecCCC
Confidence 4 777653
No 188
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.7e-09 Score=103.99 Aligned_cols=96 Identities=26% Similarity=0.341 Sum_probs=70.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--------chhHHHHHhcCC------CceEEEEEccccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS--------NSDLRSLLLSMP------SRSMLVIEDIDCSIT 307 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~--------~~~L~~l~~~~~------~~sIlviDdiD~l~~ 307 (450)
+.++||.||+|||||.||+.+|+.++.||-.-|++.+.. +.-|.+++..+. .+.||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 568999999999999999999999999999999998842 345666776653 689999999999965
Q ss_pred ccccCcccccCCCCCCchhhHHhHHHHhhccccc
Q 013083 308 LENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC 341 (450)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~ 341 (450)
.....+-. -+-...-....||..++|...+
T Consensus 177 kSeN~SIT----RDVSGEGVQQALLKiiEGTvas 206 (408)
T COG1219 177 KSENPSIT----RDVSGEGVQQALLKIIEGTVAS 206 (408)
T ss_pred cCCCCCcc----cccCchHHHHHHHHHHcCceec
Confidence 22211111 1112233556788888886543
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.8e-09 Score=107.97 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=94.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC-cc------CCchhHHHHHhcCC--CceEEEEEcccccccccccC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT-DV------QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRD 312 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~-~~------~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~ 312 (450)
-.++||+||||+|||+||..+|...++||+.+--. ++ ..-..+.+.|..+- .-+||++|||+.+++...-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI- 616 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI- 616 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc-
Confidence 35799999999999999999999999999976322 22 22356778888764 4689999999999763322
Q ss_pred cccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCC-ccccCCCcceeEEEeCCCCH-HHHHHHHHH
Q 013083 313 SKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLD-PALLRPGRMDMHIHMSYCTA-SVFEQLAFN 388 (450)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld-~aLlrpgR~d~~I~~~~p~~-~~r~~l~~~ 388 (450)
.+..+..++..|+-.+...... +...+|++||...+.|. -.++. +|+..|++|..+. ++..+++..
T Consensus 617 -------GPRfSN~vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 -------GPRFSNLVLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -------CchhhHHHHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 1234556777777777765442 23345556666655443 34566 8999999999876 555555554
No 190
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.96 E-value=1e-08 Score=109.36 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHH-----------cCCcEEEE
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANH-----------LKFDIYDL 273 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~-----------l~~~~~~l 273 (450)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999999999998888766553 358999999999999999999987 36799999
Q ss_pred ecCccCCchhHHH-HHh------------------cCCCceEEEEEcccccc
Q 013083 274 DLTDVQSNSDLRS-LLL------------------SMPSRSMLVIEDIDCSI 306 (450)
Q Consensus 274 ~~~~~~~~~~L~~-l~~------------------~~~~~sIlviDdiD~l~ 306 (450)
||+.+.. +.+.. +|. .....+.||||||+.+.
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 9999853 33332 222 12245789999999873
No 191
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.94 E-value=2e-08 Score=107.01 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=102.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~ 279 (450)
...+|++++|.....+.+.+.+..+... ..++||+|++||||+++|++|.+.. +.||+.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3457999999999999998888776553 3589999999999999999999875 5799999999885
Q ss_pred CchhHHH-HHh------------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 280 SNSDLRS-LLL------------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 280 ~~~~L~~-l~~------------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
. ..+.. +|. .....+.||||||+.+.. .....|+..++.-.-
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~------------------~~Q~~Ll~~L~~~~~ 336 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL------------------PLQTRLLRVLEEREV 336 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH------------------HHHHHHHHHHhcCcE
Confidence 3 33332 332 113467899999998732 344556666643210
Q ss_pred -cCC------CCeEEEEEcCCC-C------CCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhCc
Q 013083 341 -CCS------EGRIIIFTTNHK-E------KLDPALLRPGRMD-MHIHMSYCTA--SVFEQLAFNYLGI 392 (450)
Q Consensus 341 -~~~------~~~iiI~TTN~~-~------~ld~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l~~ 392 (450)
..+ -++-+|++||.. + .+.+.|.. |+. ..|++|+... +....|+..|+..
T Consensus 337 ~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 337 VRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred EecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 001 122466666543 2 12233333 443 4566666544 4556677777753
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.93 E-value=3.7e-09 Score=98.67 Aligned_cols=140 Identities=21% Similarity=0.340 Sum_probs=66.3
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-cEE-EEecCcc-----
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-DIY-DLDLTDV----- 278 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-~~~-~l~~~~~----- 278 (450)
.|+++.|++..|..+.-... | ..++||+||||||||++|+++...+.- ..- .++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 48899999999988754332 2 368999999999999999999987721 000 0111111
Q ss_pred ----------------CCchhHHHHHhcC----------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHH
Q 013083 279 ----------------QSNSDLRSLLLSM----------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLL 332 (450)
Q Consensus 279 ----------------~~~~~L~~l~~~~----------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL 332 (450)
........++... ..+.|||+||+--+ ...++..|+
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef------------------~~~vld~Lr 127 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF------------------DRSVLDALR 127 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------------------HHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc------------------CHHHHHHHH
Confidence 0112223333221 25789999999544 456788888
Q ss_pred HHhhccc---------ccCCCCeEEEEEcCCC-----------------------CCCCccccCCCcceeEEEeCCCCHH
Q 013083 333 NFIDGLW---------SCCSEGRIIIFTTNHK-----------------------EKLDPALLRPGRMDMHIHMSYCTAS 380 (450)
Q Consensus 333 ~~ldg~~---------~~~~~~~iiI~TTN~~-----------------------~~ld~aLlrpgR~d~~I~~~~p~~~ 380 (450)
..++.-. -.-+-+.++|+|+|.= .++...|+. |||.++.++..+.+
T Consensus 128 ~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 128 QPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 8875321 0112345788888741 245566666 77777777765543
No 193
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.92 E-value=3.6e-08 Score=105.47 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=107.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS 280 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~ 280 (450)
..+|++++|.....+++++.+...... ...+||+|++||||+++|+++.... +.+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 447999999999888888888765543 3579999999999999999997765 46899999999853
Q ss_pred chhHH-HHHhc-----------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhc-cccc
Q 013083 281 NSDLR-SLLLS-----------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG-LWSC 341 (450)
Q Consensus 281 ~~~L~-~l~~~-----------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg-~~~~ 341 (450)
+.+. .+|.. ..+.+.|+|||||.+.. .....|++.++. .+..
T Consensus 269 -~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~------------------~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 269 -DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP------------------RMQAKLLRFLNDGTFRR 329 (520)
T ss_pred -HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH------------------HHHHHHHHHHhcCCccc
Confidence 2232 33321 12467899999998732 223445555532 2111
Q ss_pred CC------CCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhCcc-------CCCcH
Q 013083 342 CS------EGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCTA--SVFEQLAFNYLGIS-------HHHLF 398 (450)
Q Consensus 342 ~~------~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l~~~-------~~~l~ 398 (450)
.+ .++.||+||+.. ..+.+.|.. |+. ..|++|+... +.+..|+..|+... ...+.
T Consensus 330 ~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 330 VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11 123466666543 234455655 654 4455655543 23445666665321 12344
Q ss_pred HHHHHHHhcCCC
Q 013083 399 EQIEEMLMKVNV 410 (450)
Q Consensus 399 ~ei~~l~~~~~~ 410 (450)
++..+.+....+
T Consensus 408 ~~a~~~L~~y~W 419 (520)
T PRK10820 408 ADLNTVLTRYGW 419 (520)
T ss_pred HHHHHHHhcCCC
Confidence 555555555444
No 194
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=2e-08 Score=102.47 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=129.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHcCceeEEEec-CCCccccc-----cc----ccCCCCCCcccccChHHHHHHHHHHHHHhc
Q 013083 160 DVVLNLYLPHVLEKAKAIKEENHMVKLHTV-EYGCWDAN-----DM----VLKHPMNFNTLALDSELKKAIMEDLDNFMN 229 (450)
Q Consensus 160 ~~vl~~yl~~vl~~~~~~~~~~r~~~l~~~-~~~~w~~~-----~~----~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~ 229 (450)
+..+..++..+-..+..++...+++ +|.. +-...... .. .......+++|+|....-+++++.++.+-.
T Consensus 21 r~~vs~~l~~l~~~~~~~~~~~~pv-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LIG~~~~~~~~~eqik~~ap 99 (403)
T COG1221 21 RANVSHELNGLGREGDLAKINGRPV-IFLPSEAFSMSELTELQALLPQARPYLKSEALDDLIGESPSLQELREQIKAYAP 99 (403)
T ss_pred HHHhHHHHHhhhhhhhHHHhcCCCc-hhHHHHHhhhhhhhhhhhcccchhhhccchhhhhhhccCHHHHHHHHHHHhhCC
Confidence 3467788888888888888888888 4422 11110000 00 012233689999999999999999887322
Q ss_pred ChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCccCCchhHHHHHhcC--------------
Q 013083 230 GKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDVQSNSDLRSLLLSM-------------- 291 (450)
Q Consensus 230 ~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~~~~~~L~~l~~~~-------------- 291 (450)
-...+|++|++||||+.+|++|.... +.||+.+||+.+..+-...++|.-.
T Consensus 100 -----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Gl 168 (403)
T COG1221 100 -----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGL 168 (403)
T ss_pred -----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCch
Confidence 24679999999999999999998654 5699999999998776666665421
Q ss_pred ---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-cc------cCCCCeEEEEEcC-CC-CCCC
Q 013083 292 ---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL-WS------CCSEGRIIIFTTN-HK-EKLD 359 (450)
Q Consensus 292 ---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~-~~------~~~~~~iiI~TTN-~~-~~ld 359 (450)
.+..+|++|||..+.. . ....|+..||.- +. .....+.+|++|| ++ +.+-
T Consensus 169 fe~A~GGtLfLDEI~~LP~---------------~---~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 169 FEQANGGTLFLDEIHRLPP---------------E---GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred heecCCCEEehhhhhhCCH---------------h---HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 2467999999988742 2 234456666531 11 1123455665554 33 2222
Q ss_pred c--cccCCCcceeEEEeCCCCH--HHHHHHHHHHhCc
Q 013083 360 P--ALLRPGRMDMHIHMSYCTA--SVFEQLAFNYLGI 392 (450)
Q Consensus 360 ~--aLlrpgR~d~~I~~~~p~~--~~r~~l~~~~l~~ 392 (450)
. .|.+ -|+...|++|...+ .++..++..|+..
T Consensus 231 ~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 231 AGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred hhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 2 4432 16677777777654 4556677777753
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=7.7e-08 Score=96.53 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=93.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC------------------------cEEEEecCc--cCCchhHHHHHhcCC---
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF------------------------DIYDLDLTD--VQSNSDLRSLLLSMP--- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~------------------------~~~~l~~~~--~~~~~~L~~l~~~~~--- 292 (450)
+.++||+||+|+||+++|.++|+.+.. +++.+...+ --.-+.+|++.....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 468999999999999999999998721 244443211 113456666654432
Q ss_pred ---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcce
Q 013083 293 ---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMD 369 (450)
Q Consensus 293 ---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d 369 (450)
..-|++||++|.+- ....+.||..++.- +++.++|++|++++.|.|.+++ |+.
T Consensus 104 ~~g~~KV~iI~~a~~m~------------------~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 104 QQGGNKVVYIQGAERLT------------------EAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred ccCCceEEEEechhhhC------------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hce
Confidence 34599999999872 35678999999863 5778999999999999999999 885
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q 013083 370 MHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~~ 389 (450)
. +.|+.|+.++..+.+...
T Consensus 160 ~-~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 T-WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred E-EeCCCCCHHHHHHHHHHH
Confidence 5 899999998877666653
No 196
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=1.6e-08 Score=109.52 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=90.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecCccC----CchhHHHHHh-----------cCCCceEEEEEccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLTDVQ----SNSDLRSLLL-----------SMPSRSMLVIEDIDCS 305 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~~~~----~~~~L~~l~~-----------~~~~~sIlviDdiD~l 305 (450)
.++||.|+||||||++++++++.+.. +|+.+++.... ..-.+...+. .....++|+||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998864 57877753211 1111221111 1134579999999987
Q ss_pred ccccccCcccccCCCCCCchhhHHhHHHHhhccc---------ccCCCCeEEEEEcCCCC---CCCccccCCCcceeEEE
Q 013083 306 ITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGRIIIFTTNHKE---KLDPALLRPGRMDMHIH 373 (450)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~iiI~TTN~~~---~ld~aLlrpgR~d~~I~ 373 (450)
- ..+.+.|+..|+.-. ...+....+|+|+|..+ .+.++|+. ||+++|.
T Consensus 97 ~------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 97 D------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred C------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 3 346777888886321 11123467788888775 78999999 9999999
Q ss_pred eCCC-CHHHHHHHHHHHh
Q 013083 374 MSYC-TASVFEQLAFNYL 390 (450)
Q Consensus 374 ~~~p-~~~~r~~l~~~~l 390 (450)
+.++ ...+|.+|++.++
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 9875 6677899998876
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=8.4e-08 Score=96.08 Aligned_cols=122 Identities=17% Similarity=0.291 Sum_probs=89.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC---------------------cEEEEe--cCccC-------CchhHHHHHhcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF---------------------DIYDLD--LTDVQ-------SNSDLRSLLLSM 291 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~---------------------~~~~l~--~~~~~-------~~~~L~~l~~~~ 291 (450)
+.++||+||+|+||+++|.++|+.+-. +++.++ ...-. .-+.++++...+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 468999999999999999999987621 244442 11100 134556555433
Q ss_pred C------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCC
Q 013083 292 P------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRP 365 (450)
Q Consensus 292 ~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrp 365 (450)
. ..-|++||++|.+- ....+.||..|+.- +.+.++|++|++++.|.|.+++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~------------------~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS- 162 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN------------------RAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS- 162 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC------------------HHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh-
Confidence 2 34699999999873 34678899988864 5678899999999999999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHH
Q 013083 366 GRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 366 gR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
|+.. +.|+.|+.++....+..
T Consensus 163 -RCq~-i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 -RCQR-LEFKLPPAHEALAWLLA 183 (319)
T ss_pred -hheE-eeCCCcCHHHHHHHHHH
Confidence 9965 89999999887766654
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=9.1e-08 Score=95.77 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=93.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC-----------------------CcEEEEecCc---cCCchhHHHHHhcC---C
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK-----------------------FDIYDLDLTD---VQSNSDLRSLLLSM---P 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~-----------------------~~~~~l~~~~---~~~~~~L~~l~~~~---~ 292 (450)
+.++||+||.|+||+++|.++|+.+. -+++.+.... .-.-+.++++.... +
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 46899999999999999999999872 2455554432 11335566654332 1
Q ss_pred ---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcce
Q 013083 293 ---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMD 369 (450)
Q Consensus 293 ---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d 369 (450)
..-|++||++|.+- ...-+.||+.++.- +.+.++|++|++++.+-|.+++ |+.
T Consensus 105 ~~~~~kV~iI~~ae~m~------------------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 105 QLNGYRLFVIEPADAMN------------------ESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred ccCCceEEEecchhhhC------------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cce
Confidence 35699999999872 35678899999874 5778999999999999999999 986
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 013083 370 MHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~ 388 (450)
. +.|+.|+.++..+.+..
T Consensus 161 ~-~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 Q-WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred e-EeCCCCCHHHHHHHHHH
Confidence 4 99999999888776654
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87 E-value=1.1e-08 Score=103.06 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=47.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC---------chhHHHHHhcCCCceEEEEEccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS---------NSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~---------~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
.+++||||||||||+|+.|||+++ +..++.++..++.. .......+.......+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 689999999999999999999997 77888887766521 1122222455567789999999754
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.86 E-value=1.7e-08 Score=111.55 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=69.2
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCc
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSN 281 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~ 281 (450)
..|++++|.....+.+++.+..+... ..++||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 46899999999999999998876543 3589999999999999999999865 57999999998742
Q ss_pred hhHH-HHHh-----------------cCCCceEEEEEccccc
Q 013083 282 SDLR-SLLL-----------------SMPSRSMLVIEDIDCS 305 (450)
Q Consensus 282 ~~L~-~l~~-----------------~~~~~sIlviDdiD~l 305 (450)
..+. .+|. ....+++|+||||+.+
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 1111 1111 2234688999999987
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.86 E-value=1.3e-09 Score=100.38 Aligned_cols=63 Identities=30% Similarity=0.612 Sum_probs=46.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC-------CchhHHHHHhcCCCceEEEEEcccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ-------SNSDLRSLLLSMPSRSMLVIEDIDC 304 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~-------~~~~L~~l~~~~~~~sIlviDdiD~ 304 (450)
+.|++|+||||||||+||.|+|+++ +..++.++.+++. ......+.+....+..+|||||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 4799999999999999999999987 7888888877661 2233444555556778999999964
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=5.5e-08 Score=98.25 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=93.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC------------------------CcEEEEecCc---cCCchhHHHHHhcCC--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK------------------------FDIYDLDLTD---VQSNSDLRSLLLSMP-- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~------------------------~~~~~l~~~~---~~~~~~L~~l~~~~~-- 292 (450)
+..+||+||+|+||+++|.++|..+- -+++.+.... .-.-+.++++.....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 46899999999999999999999872 1344443221 113456666654432
Q ss_pred ----CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013083 293 ----SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRM 368 (450)
Q Consensus 293 ----~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~ 368 (450)
..-|++||++|.+- ...-+.||..|+.- +++.++|++|++++.|.|.+++ |+
T Consensus 104 ~~~g~~kV~iI~~ae~m~------------------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLT------------------DAAANALLKTLEEP----PENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred cccCCceEEEEcchHhhC------------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cc
Confidence 45699999999873 35678999999863 6788999999999999999999 88
Q ss_pred eeEEEeCCCCHHHHHHHHHH
Q 013083 369 DMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 369 d~~I~~~~p~~~~r~~l~~~ 388 (450)
.. +.|+.|+.++..+.+..
T Consensus 160 q~-~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 160 RL-HYLAPPPEQYALTWLSR 178 (334)
T ss_pred cc-ccCCCCCHHHHHHHHHH
Confidence 75 89999999887776654
No 203
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=2e-08 Score=104.56 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=87.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
.++.+|++++|......++++.++.+-.. ...+||.|.+||||..+|++|.+.. +-||+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 35568999999999999988888766543 4589999999999999999999987 679999999998
Q ss_pred CCchhHHH-HH-------hc-----------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-
Q 013083 279 QSNSDLRS-LL-------LS-----------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL- 338 (450)
Q Consensus 279 ~~~~~L~~-l~-------~~-----------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~- 338 (450)
- +.-|.. +| .. ..+.+-||+|||..+ .......||..++.-
T Consensus 308 P-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem------------------pl~LQaKLLRVLQEke 368 (560)
T COG3829 308 P-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM------------------PLPLQAKLLRVLQEKE 368 (560)
T ss_pred C-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC------------------CHHHHHHHHHHHhhce
Confidence 3 222222 22 11 124568999999765 223455667666521
Q ss_pred -ccc-----CCCCeEEEEEcCCC
Q 013083 339 -WSC-----CSEGRIIIFTTNHK 355 (450)
Q Consensus 339 -~~~-----~~~~~iiI~TTN~~ 355 (450)
+.- -+-.+-||++||..
T Consensus 369 i~rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 369 IERVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred EEecCCCCceeeEEEEEeccCcC
Confidence 111 12236789999864
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-08 Score=110.42 Aligned_cols=152 Identities=23% Similarity=0.296 Sum_probs=108.8
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEec
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDL 275 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~ 275 (450)
.+|.++|-++..+++++.|.+.. +++-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 58999999999999988875333 4678999999999999999999987 678999998
Q ss_pred CccCC--------chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCC
Q 013083 276 TDVQS--------NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEG 345 (450)
Q Consensus 276 ~~~~~--------~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~ 345 (450)
+.+.. ++.|+.++.... .+.|||||||+.+.+..... +. ..-.+.+|.-.- ..|+-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---------G~-a~DAaNiLKPaL----ARGeL 300 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---------GG-AMDAANLLKPAL----ARGEL 300 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---------cc-ccchhhhhHHHH----hcCCe
Confidence 88732 567777776654 48999999999998632110 11 122233333221 11344
Q ss_pred eEEEEEcC-----CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q 013083 346 RIIIFTTN-----HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 346 ~iiI~TTN-----~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
++|-+||- +.++ |+||-| ||.. |.+..|+.++-..|++.
T Consensus 301 ~~IGATT~~EYRk~iEK-D~AL~R--RFQ~-V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 301 RCIGATTLDEYRKYIEK-DAALER--RFQK-VLVDEPSVEDTIAILRG 344 (786)
T ss_pred EEEEeccHHHHHHHhhh-chHHHh--cCce-eeCCCCCHHHHHHHHHH
Confidence 55555552 2233 899999 9977 99999999987777764
No 205
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.84 E-value=1.4e-07 Score=100.74 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=99.9
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 282 (450)
.+++++|.....+.+.+.+...... ...+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 5788999999999999988876543 4589999999999999999999985 57999999999853 2
Q ss_pred hHH-HHHh-----------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc-c--
Q 013083 283 DLR-SLLL-----------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS-C-- 341 (450)
Q Consensus 283 ~L~-~l~~-----------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~-~-- 341 (450)
.+. .+|. ....++.|||||||.+.. .....|+..++.-.- .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~------------------~~Q~~Ll~~l~~~~~~~~g 314 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL------------------ALQAKLLRVLQYGEIQRVG 314 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH------------------HHHHHHHHHHhcCCEeeCC
Confidence 222 2332 123467899999998832 234556666643210 0
Q ss_pred ----CCCCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhC
Q 013083 342 ----CSEGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 342 ----~~~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
..-++-||+|||.. ..+.+.|.. |+. ..|++|+... +....|+.+|+.
T Consensus 315 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 315 SDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred CCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 01134566666643 234445544 553 3355655433 334456666664
No 206
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=2.7e-07 Score=91.44 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=48.5
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC--CcEEEEecCcc
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK--FDIYDLDLTDV 278 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~--~~~~~l~~~~~ 278 (450)
=+-++|+.+.++..=-.++ .++ -|+-..+|+|+.||||||||.||-+||++|| .||..++.+++
T Consensus 38 ~dG~VGQ~~AReAaGvIv~-mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVK-MIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhhHHHH-HHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3778999888776432222 222 2444579999999999999999999999996 68888887776
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.82 E-value=9.5e-09 Score=90.48 Aligned_cols=126 Identities=23% Similarity=0.306 Sum_probs=77.5
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC---cEEEEecCccCCchhHHHHH
Q 013083 212 LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF---DIYDLDLTDVQSNSDLRSLL 288 (450)
Q Consensus 212 ~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~---~~~~l~~~~~~~~~~L~~l~ 288 (450)
|.....+++.+.+...... ...+||+|+|||||+++|++|+...+. +++.++|.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4556677788877766653 468999999999999999999998754 56666766643 3445
Q ss_pred hcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCC------CCccc
Q 013083 289 LSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEK------LDPAL 362 (450)
Q Consensus 289 ~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~------ld~aL 362 (450)
..+ .+..|+|+|||.+.. .....|+..++.... ..-++|+.++..++. +++.|
T Consensus 66 ~~a-~~gtL~l~~i~~L~~------------------~~Q~~L~~~l~~~~~--~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLSP------------------EAQRRLLDLLKRQER--SNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp HHC-TTSEEEEECGCCS-H------------------HHHHHHHHHHHHCTT--TTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred HHc-CCCEEEECChHHCCH------------------HHHHHHHHHHHhcCC--CCeEEEEEeCCCHHHHhhccchhHHH
Confidence 554 777899999998832 344455555554321 234555555544443 44555
Q ss_pred cCCCcce-eEEEeCC
Q 013083 363 LRPGRMD-MHIHMSY 376 (450)
Q Consensus 363 lrpgR~d-~~I~~~~ 376 (450)
.. |+. ..|++|.
T Consensus 125 ~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 125 YY--RLSQLEIHLPP 137 (138)
T ss_dssp HH--HCSTCEEEE--
T ss_pred HH--HhCCCEEeCCC
Confidence 44 443 3455553
No 208
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=2.3e-08 Score=98.25 Aligned_cols=134 Identities=23% Similarity=0.398 Sum_probs=81.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCc---EEEEecCccCCchhHHHHHhcC-------------CCceEEEEEccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFD---IYDLDLTDVQSNSDLRSLLLSM-------------PSRSMLVIEDIDCS 305 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~---~~~l~~~~~~~~~~L~~l~~~~-------------~~~sIlviDdiD~l 305 (450)
++.+||+||+|||||++++.+-..+.-. +..++++...+...+++++... .++.|++|||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4789999999999999998877766432 4456776665556666655432 24679999999754
Q ss_pred ccccccCcccccCCCCCCchhhHHhHHHH-hh--cccccC------CCCeEEEEEcCCCC---CCCccccCCCcceeEEE
Q 013083 306 ITLENRDSKDQAGHNQGDNKVTLSGLLNF-ID--GLWSCC------SEGRIIIFTTNHKE---KLDPALLRPGRMDMHIH 373 (450)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~-ld--g~~~~~------~~~~iiI~TTN~~~---~ld~aLlrpgR~d~~I~ 373 (450)
.. +........+||.. +| |.+... -.++.+|+++|... .+++.|+| .|.. +.
T Consensus 113 ~~-------------d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~i-~~ 176 (272)
T PF12775_consen 113 QP-------------DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFNI-LN 176 (272)
T ss_dssp ----------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEEE-EE
T ss_pred CC-------------CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heEE-EE
Confidence 32 11122223344433 33 333211 13467778887542 47889998 7864 99
Q ss_pred eCCCCHHHHHHHHHHHhC
Q 013083 374 MSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 374 ~~~p~~~~r~~l~~~~l~ 391 (450)
+++|+.++...|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999988887776664
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=98.82 E-value=7.6e-09 Score=100.95 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=46.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC-------CchhHHHHHhc-CCCceEEEEEccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ-------SNSDLRSLLLS-MPSRSMLVIEDIDCS 305 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~-------~~~~L~~l~~~-~~~~sIlviDdiD~l 305 (450)
..+++|+||||||||+|+.++|..+ |..+..+++.++. ....+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4689999999999999999998774 6777777655542 11224444444 456789999999754
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.3e-08 Score=97.23 Aligned_cols=92 Identities=26% Similarity=0.503 Sum_probs=64.2
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC--
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS-- 280 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~-- 280 (450)
.+.++-+.++..+..+..+..+.. +|. -+.+++|+||||||||+|+.|||+++ |.+++.+...++-.
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 445556666666666666655542 222 25799999999999999999999998 67888888777621
Q ss_pred -----chhHH-HHHhcCCCceEEEEEccccc
Q 013083 281 -----NSDLR-SLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 281 -----~~~L~-~l~~~~~~~sIlviDdiD~l 305 (450)
+.... ++...+.+..+|||||+...
T Consensus 149 k~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 149 KAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 11222 23333677889999999754
No 211
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=8.6e-08 Score=96.13 Aligned_cols=65 Identities=28% Similarity=0.385 Sum_probs=46.2
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC--CcEEEEecCccC
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK--FDIYDLDLTDVQ 279 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~--~~~~~l~~~~~~ 279 (450)
.+.++|+.+.++..--.++.-.. |+-.+|++||.||||||||.||-+||++|| .||..++.+++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~--------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE--------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT--------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHHhc--------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 47899999998876544432222 223368999999999999999999999996 788888888773
No 212
>PRK06921 hypothetical protein; Provisional
Probab=98.77 E-value=2.2e-08 Score=98.03 Aligned_cols=63 Identities=29% Similarity=0.373 Sum_probs=46.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCccCC-----chhHHHHHhcCCCceEEEEEcccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDVQS-----NSDLRSLLLSMPSRSMLVIEDIDC 304 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~~~-----~~~L~~l~~~~~~~sIlviDdiD~ 304 (450)
..+++|+||||||||+|+.|||+++ +..++.+...++.. ...+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999987 56777776544311 112233445556788999999954
No 213
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=100.58 Aligned_cols=131 Identities=22% Similarity=0.276 Sum_probs=88.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--------chhHHHHHhcCC------CceEEEEEccccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS--------NSDLRSLLLSMP------SRSMLVIEDIDCSIT 307 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~--------~~~L~~l~~~~~------~~sIlviDdiD~l~~ 307 (450)
+.++||.||+|+|||.|++.||.-++.||...||+.+.. ++-|.+++..+. +..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 568999999999999999999999999999999999842 566778887764 688999999999863
Q ss_pred ccccCcccccCCCCCCchhhHHhHHHHhhccccc---------CCCCeEEEEEcCC-------CCCCCccccCCCcce-e
Q 013083 308 LENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC---------CSEGRIIIFTTNH-------KEKLDPALLRPGRMD-M 370 (450)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~---------~~~~~iiI~TTN~-------~~~ld~aLlrpgR~d-~ 370 (450)
....-.. .-+-...-...+||..++|..-+ ..++.+.|=|||- --.||.-+.| |++ .
T Consensus 306 ~~~~i~~----~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~ 379 (564)
T KOG0745|consen 306 KAESIHT----SRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDK 379 (564)
T ss_pred cCccccc----cccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcch
Confidence 1111000 00112233556788888875322 1233455555553 3456666655 543 4
Q ss_pred EEEeCCCC
Q 013083 371 HIHMSYCT 378 (450)
Q Consensus 371 ~I~~~~p~ 378 (450)
.+-|+.|+
T Consensus 380 slGFg~~s 387 (564)
T KOG0745|consen 380 SLGFGAPS 387 (564)
T ss_pred hcccCCCC
Confidence 56666663
No 214
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4.9e-08 Score=98.26 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=88.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC-------------------------CcEEEEecCcc----------CCchhHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK-------------------------FDIYDLDLTDV----------QSNSDLRS 286 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~-------------------------~~~~~l~~~~~----------~~~~~L~~ 286 (450)
+.++||+||+|+|||++|.++|+.+. -+++.++...- -.-+.+|+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 56899999999999999999999872 24666654320 12355666
Q ss_pred HHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCc
Q 013083 287 LLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDP 360 (450)
Q Consensus 287 l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~ 360 (450)
+...+. ..-|++||+++.+- ....+.|+..++.. +.+..+|++|++++.+.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld------------------~~a~naLLk~LEep----~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMN------------------LQAANSLLKVLEEP----PPQVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCC------------------HHHHHHHHHHHHhC----cCCCEEEEEeCChHhChH
Confidence 655442 35688999998772 34567788877764 234678889999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHH
Q 013083 361 ALLRPGRMDMHIHMSYCTASVFEQLAF 387 (450)
Q Consensus 361 aLlrpgR~d~~I~~~~p~~~~r~~l~~ 387 (450)
.+.+ |+.. +.|+.|+.++..+.+.
T Consensus 159 ti~S--Rc~~-~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 159 TIKS--RCRK-MVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHH--Hhhh-hcCCCCCHHHHHHHHH
Confidence 9998 8854 8999999988766554
No 215
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.73 E-value=1.7e-07 Score=90.06 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=111.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-CCc----------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-KFD---------- 269 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~~~---------- 269 (450)
...|.+|+.+....+....+..... ..+ -..+|+|||+|+||-|.+.++-+++ |.-
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~----~~d---------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS----TGD---------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc----cCC---------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 7889999999888877776655332 111 1379999999999999999999988 211
Q ss_pred ------------------EEEEecCccCC--chhHHHHHhcCC-----------CceEEEEEcccccccccccCcccccC
Q 013083 270 ------------------IYDLDLTDVQS--NSDLRSLLLSMP-----------SRSMLVIEDIDCSITLENRDSKDQAG 318 (450)
Q Consensus 270 ------------------~~~l~~~~~~~--~~~L~~l~~~~~-----------~~sIlviDdiD~l~~~~~~~~~~~~~ 318 (450)
-++++.++.+. .--+++++..+. .--++||.|.|.+-
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 11233333332 122344544432 12488999999873
Q ss_pred CCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH
Q 013083 319 HNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF 398 (450)
Q Consensus 319 ~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 398 (450)
+....+|-.-|+...+.| -+|+.+|...++-+++.+ |+-. |.+|.|+.++...++...+..++-.+.
T Consensus 141 ------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RCl~-iRvpaps~eeI~~vl~~v~~kE~l~lp 207 (351)
T KOG2035|consen 141 ------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RCLF-IRVPAPSDEEITSVLSKVLKKEGLQLP 207 (351)
T ss_pred ------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--heeE-EeCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 223455666666654433 478899999999999998 8744 999999999999999888876655554
Q ss_pred HHH
Q 013083 399 EQI 401 (450)
Q Consensus 399 ~ei 401 (450)
+++
T Consensus 208 ~~~ 210 (351)
T KOG2035|consen 208 KEL 210 (351)
T ss_pred HHH
Confidence 443
No 216
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.69 E-value=7.8e-08 Score=94.06 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=104.7
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc--
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD-- 269 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~-- 269 (450)
-.|.. .++|..++++++..++-..+.+ |... .+. ...|+|||||||||+.+.+.|..+-.+
T Consensus 29 ~pwve----kyrP~~l~dv~~~~ei~st~~~----~~~~------~~l---Ph~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 29 QPWVE----KYRPPFLGIVIKQEPIWSTENR----YSGM------PGL---PHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred CCCcc----CCCCchhhhHhcCCchhhHHHH----hccC------CCC---CcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 36766 8899999999998776555443 3221 122 289999999999999999999988432
Q ss_pred ----EEEEecCccCCchhH---HHHHhcCC---------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH
Q 013083 270 ----IYDLDLTDVQSNSDL---RSLLLSMP---------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN 333 (450)
Q Consensus 270 ----~~~l~~~~~~~~~~L---~~l~~~~~---------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 333 (450)
+..++.++-..-.-. .+.|..+. ..-.+++||.|.... ...++|-.
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------------~AQnALRR 153 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------------DAQNALRR 153 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------------HHHHHHHH
Confidence 334455544322111 12233332 456899999998732 23344444
Q ss_pred HhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 334 FIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 334 ~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
.+... ..+.-+...+|++..+.|+++. ||.. +.+...+..+-.....+....+
T Consensus 154 viek~----t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 154 VIEKY----TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred HHHHh----ccceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcc
Confidence 44443 2445566889999999999998 8866 6677777666666666655444
No 217
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=1.7e-07 Score=99.05 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=97.1
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchh
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSD 283 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 283 (450)
+..++|.....+.+.+.+...... ...+|+.|++||||+++|+++.... +.+++.++|+.+.. ..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HH
Confidence 566788877777777766544322 3579999999999999999999986 46999999998843 33
Q ss_pred HHH-HHhc-----------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc--ccCC
Q 013083 284 LRS-LLLS-----------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW--SCCS 343 (450)
Q Consensus 284 L~~-l~~~-----------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~--~~~~ 343 (450)
+.. +|.. ...++.|||||||.+.. .....|+..++... ...+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------~~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------DVQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------HHHHHHHHHHhcCcEEeCCC
Confidence 333 3221 12456899999998732 23445666665321 1001
Q ss_pred -----CCeEEEEEcCCC-------CCCCccccCCCcc-eeEEEeCCCCH--HHHHHHHHHHhC
Q 013083 344 -----EGRIIIFTTNHK-------EKLDPALLRPGRM-DMHIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 344 -----~~~iiI~TTN~~-------~~ld~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
-++-||+||+.. ..+.+.|.. |+ ...|++|+... +....|+..|+.
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 123566666542 235566666 66 45666666543 445567777764
No 218
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=1e-07 Score=82.77 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=71.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC--CcEEEEecCccCCch----hHHHHHhcC--CCceEEEEEcccccccccccCcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK--FDIYDLDLTDVQSNS----DLRSLLLSM--PSRSMLVIEDIDCSITLENRDSK 314 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~--~~~~~l~~~~~~~~~----~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~ 314 (450)
+.++|+||+|+|||++++.+++.+. .++..+++.+..... ++.+.+.+. ..+.+|+||||+.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~------- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD------- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc-------
Confidence 5689999999999999999999886 788888888764221 133444333 3678999999987621
Q ss_pred cccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC---CCCccccCCCcceeEEEeCCCCHHHH
Q 013083 315 DQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE---KLDPALLRPGRMDMHIHMSYCTASVF 382 (450)
Q Consensus 315 ~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~---~ld~aLlrpgR~d~~I~~~~p~~~~r 382 (450)
....+..+.+ . .....+++.+++... .....| +||+. .++|.+.+..++
T Consensus 76 ---------~~~~lk~l~d---~----~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 ---------WEDALKFLVD---N----GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFREF 127 (128)
T ss_pred ---------HHHHHHHHHH---h----ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHHh
Confidence 2222333332 1 112344444444332 223333 45886 489999888764
No 219
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.63 E-value=4.3e-07 Score=85.65 Aligned_cols=157 Identities=23% Similarity=0.297 Sum_probs=82.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcE---EEEecCccCC--------------------------------------
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDI---YDLDLTDVQS-------------------------------------- 280 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~---~~l~~~~~~~-------------------------------------- 280 (450)
.+.++|+||+|+|||+|++.+.+.+.-.- +.++......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 36899999999999999999999984311 1111111100
Q ss_pred ---chhHHHHHh---cCCCceEEEEEcccccc-cccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE-EEc
Q 013083 281 ---NSDLRSLLL---SMPSRSMLVIEDIDCSI-TLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII-FTT 352 (450)
Q Consensus 281 ---~~~L~~l~~---~~~~~sIlviDdiD~l~-~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI-~TT 352 (450)
...+..++. ....+.||+|||++.+. . .......+..|.+.++.... ..+..+| +++
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S 164 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA-------------SEEDKDFLKSLRSLLDSLLS--QQNVSIVITGS 164 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC-------------TTTTHHHHHHHHHHHHH------TTEEEEEEES
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc-------------ccchHHHHHHHHHHHhhccc--cCCceEEEECC
Confidence 111122221 12235899999999885 2 11234556677777766433 2344444 444
Q ss_pred CCC---C--CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCC---cHHHHHHHHhcCCCCHHHHHH
Q 013083 353 NHK---E--KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHH---LFEQIEEMLMKVNVTPAEVAG 417 (450)
Q Consensus 353 N~~---~--~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~---l~~ei~~l~~~~~~spa~i~~ 417 (450)
... + .-...+.. |+.. +.+++.+.++..+++...+... .. -.++++.+..-.+-.|..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp SHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred chHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 311 1 12233444 8888 9999999999999998865433 22 245556665555666666543
No 220
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.62 E-value=1.7e-06 Score=84.32 Aligned_cols=172 Identities=18% Similarity=0.186 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC-cEEEEe--cCccC----------
Q 013083 213 DSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF-DIYDLD--LTDVQ---------- 279 (450)
Q Consensus 213 ~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~-~~~~l~--~~~~~---------- 279 (450)
.....++++..+...+..+ ...++|+||+|+|||++++.+++.+.. .+.... .....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~----------~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~ 93 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQR----------EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAA 93 (269)
T ss_pred CCHHHHHHHHHHHHHHhcC----------CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHH
Confidence 3344455666665444321 235889999999999999999999862 222211 11110
Q ss_pred -------Cc------hhHHHHHh---cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC
Q 013083 280 -------SN------SDLRSLLL---SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS 343 (450)
Q Consensus 280 -------~~------~~L~~l~~---~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~ 343 (450)
.. ..+...+. ....+.+|+|||++.+.. .....+..+.+... . .+
T Consensus 94 ~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~l~~~~~---~-~~ 154 (269)
T TIGR03015 94 DFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTP---------------ELLEELRMLSNFQT---D-NA 154 (269)
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCH---------------HHHHHHHHHhCccc---C-CC
Confidence 00 11222121 124578999999997631 01112222222211 1 11
Q ss_pred CCeEEEEEcCCCC---CCC----ccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC----CCc-HHHHHHHHhcCCCC
Q 013083 344 EGRIIIFTTNHKE---KLD----PALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH----HHL-FEQIEEMLMKVNVT 411 (450)
Q Consensus 344 ~~~iiI~TTN~~~---~ld----~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~----~~l-~~ei~~l~~~~~~s 411 (450)
....||++. .++ .+. ..+.+ |+...++++..+.++...++...+.... ..+ .+.++.+.+..+-.
T Consensus 155 ~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~ 231 (269)
T TIGR03015 155 KLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred CeEEEEEcC-CHHHHHHHcCchhHHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc
Confidence 222333333 222 221 23555 8888899999999999988887774321 122 24444455444444
Q ss_pred HHHHH
Q 013083 412 PAEVA 416 (450)
Q Consensus 412 pa~i~ 416 (450)
|..|.
T Consensus 232 p~~i~ 236 (269)
T TIGR03015 232 PRLIN 236 (269)
T ss_pred ccHHH
Confidence 55543
No 221
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.57 E-value=4.7e-07 Score=86.75 Aligned_cols=146 Identities=19% Similarity=0.238 Sum_probs=85.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHN 320 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~ 320 (450)
..|-.++||+|||||..++++|+.+|..++.++|++..+-..+.+++..+. .++-+++||++++-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 357789999999999999999999999999999999989999999998765 689999999998731
Q ss_pred CCCchhhHHhHHHHh-hccccc------------CCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCHHHHH
Q 013083 321 QGDNKVTLSGLLNFI-DGLWSC------------CSEGRIIIFTTNH----KEKLDPALLRPGRMDMHIHMSYCTASVFE 383 (450)
Q Consensus 321 ~~~~~~~l~~LL~~l-dg~~~~------------~~~~~iiI~TTN~----~~~ld~aLlrpgR~d~~I~~~~p~~~~r~ 383 (450)
..-..+...+..+ +.+... ...+.-++.|.|. ...||+.|+. -| +-+.|..||.....
T Consensus 99 --~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ 173 (231)
T PF12774_consen 99 --EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIA 173 (231)
T ss_dssp --HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHH
Confidence 1111122222222 111110 0112235566663 3578888876 44 55899999988776
Q ss_pred HHHHHHhCccC-CCcHHHHHHHH
Q 013083 384 QLAFNYLGISH-HHLFEQIEEML 405 (450)
Q Consensus 384 ~l~~~~l~~~~-~~l~~ei~~l~ 405 (450)
++.-.-.+-.+ ..+.+.+..+.
T Consensus 174 ei~L~s~GF~~a~~La~kl~~l~ 196 (231)
T PF12774_consen 174 EILLLSQGFKDAKSLAKKLVSLF 196 (231)
T ss_dssp HHHHHCCCTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCchhHHHHHHHHHHHH
Confidence 65554444322 23344444443
No 222
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.57 E-value=8.8e-07 Score=92.14 Aligned_cols=210 Identities=18% Similarity=0.280 Sum_probs=119.0
Q ss_pred CCCcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 190 EYGCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 190 ~~~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
....|.. ...|.+.++|+-......+|..+++.+..... .-..+-+||+||+||||||.++.||+++|+.
T Consensus 68 ~~elW~e----Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 68 EFELWVE----KYKPRTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred ccchhHH----hcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 3457877 88999999999998888888888773322111 1114678899999999999999999999998
Q ss_pred EEEEec-------CccCC---------chhHHH---HHhcC--------------CCceEEEEEcccccccccccCcccc
Q 013083 270 IYDLDL-------TDVQS---------NSDLRS---LLLSM--------------PSRSMLVIEDIDCSITLENRDSKDQ 316 (450)
Q Consensus 270 ~~~l~~-------~~~~~---------~~~L~~---l~~~~--------------~~~sIlviDdiD~l~~~~~~~~~~~ 316 (450)
+.+-.. ..+.+ ...|.. .+..+ ..+-+|+|||+-..+.
T Consensus 138 ~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~--------- 208 (634)
T KOG1970|consen 138 LIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY--------- 208 (634)
T ss_pred eeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhh---------
Confidence 886541 11111 112221 11111 1356899999976643
Q ss_pred cCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC--CCCCCccccCC------CcceeEEEeCCCCHHHHHHHHHH
Q 013083 317 AGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH--KEKLDPALLRP------GRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 317 ~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~--~~~ld~aLlrp------gR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
......+...|...- +. +..-+||+.|+. ++..++..+.| .|+.. |.|.+-...-.+..++.
T Consensus 209 -----~d~~~~f~evL~~y~---s~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~-IsFNPIa~T~MKK~L~r 278 (634)
T KOG1970|consen 209 -----RDDSETFREVLRLYV---SI-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISN-ISFNPIAPTIMKKFLKR 278 (634)
T ss_pred -----hhhHHHHHHHHHHHH---hc-CCCcEEEEEeccccCCCcchhhhchhhhhhccCcce-EeecCCcHHHHHHHHHH
Confidence 112334444443221 11 222244444433 23333333322 24543 77777777777777776
Q ss_pred HhCccCCCcHHHHHHHHhcCCCC-HHHHHHHHHHhccCcHHHHHHHHHHH
Q 013083 389 YLGISHHHLFEQIEEMLMKVNVT-PAEVAGELMKSKCKYAEISLQGIVKF 437 (450)
Q Consensus 389 ~l~~~~~~l~~ei~~l~~~~~~s-pa~i~~~L~~~~~~~~~~al~~l~~~ 437 (450)
.+..+..++.+ ..+. -++|.. +.....+|.+.|+..|+-+
T Consensus 279 ic~~e~~~~s~--------~k~~~~~~v~~-i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 279 ICRIEANKKSG--------IKVPDTAEVEL-ICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred HHHHhcccccC--------CcCchhHHHHH-HHHhcCccHHHHHhHhhhh
Confidence 66544333221 0111 233333 3333467788888777655
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.57 E-value=2.7e-06 Score=89.28 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 282 (450)
.+..+++.....+.+...+...... ..+++++|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS-----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 3455777766667776666543221 3579999999999999999998876 46899999999843 3
Q ss_pred hHHHH-Hhc-----------------CCCceEEEEEcccccc
Q 013083 283 DLRSL-LLS-----------------MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 283 ~L~~l-~~~-----------------~~~~sIlviDdiD~l~ 306 (450)
.+... |.. ...+++|+||||+.+.
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 33332 221 1346789999999883
No 224
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.56 E-value=1.2e-07 Score=79.84 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=39.4
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEccccc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
|.||||||+|||++++.||..+.-.+-.-....+-....-.+.+.......++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887533211111111111112344566667789999999765
No 225
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.55 E-value=3.1e-07 Score=97.34 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=86.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc--EEEEecCccCC-
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD--IYDLDLTDVQS- 280 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~--~~~l~~~~~~~- 280 (450)
+..|+++.|+...++.+.-. .. ....++|.||||||||+++++++..+.-. -..++.+.+.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~a----a~-----------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIA----AA-----------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhh----cc-----------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 34789999988776554322 11 13579999999999999999999754210 00111111100
Q ss_pred --------------------chhHHHH----------HhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 281 --------------------NSDLRSL----------LLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 281 --------------------~~~L~~l----------~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
...-..+ ......+.+|||||++.+. ...+..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~------------------~~~~~~ 314 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK------------------RSVLDA 314 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC------------------HHHHHH
Confidence 0000011 1122356899999998762 245566
Q ss_pred HHHHhhccc----c-----cCCCCeEEEEEcCCC------C-----------------CCCccccCCCcceeEEEeCCCC
Q 013083 331 LLNFIDGLW----S-----CCSEGRIIIFTTNHK------E-----------------KLDPALLRPGRMDMHIHMSYCT 378 (450)
Q Consensus 331 LL~~ldg~~----~-----~~~~~~iiI~TTN~~------~-----------------~ld~aLlrpgR~d~~I~~~~p~ 378 (450)
|+..|+.-. . .-+.+..+|+++|.- + ++...|+. |||.++.++.++
T Consensus 315 L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~ 392 (499)
T TIGR00368 315 LREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLP 392 (499)
T ss_pred HHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCC
Confidence 666664211 0 012356788888852 1 58888999 999999999987
Q ss_pred HHH
Q 013083 379 ASV 381 (450)
Q Consensus 379 ~~~ 381 (450)
..+
T Consensus 393 ~~~ 395 (499)
T TIGR00368 393 PEK 395 (499)
T ss_pred HHH
Confidence 654
No 226
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.54 E-value=4.7e-07 Score=94.17 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=100.9
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~~~~~ 282 (450)
.+..++|.....+++.+.+...-.. .-.+|++|++||||-.+|++|..... .||+.+||..+-.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4677899999999988888655543 35899999999999999999999884 599999999984332
Q ss_pred hHHHHHhcC-----------------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-cccCC-
Q 013083 283 DLRSLLLSM-----------------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL-WSCCS- 343 (450)
Q Consensus 283 ~L~~l~~~~-----------------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~-~~~~~- 343 (450)
-=.++|... .+++.||||||..+. ......||..+..- ....|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp------------------l~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP------------------LELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC------------------HHHHHHHHHHHHcCeeEecCC
Confidence 223344321 246799999998662 23445666666521 11111
Q ss_pred -----CCeEEEEEcCCC-------CCCCccccCCCcceeEEEeCCCCHHHHH----HHHHHHhC
Q 013083 344 -----EGRIIIFTTNHK-------EKLDPALLRPGRMDMHIHMSYCTASVFE----QLAFNYLG 391 (450)
Q Consensus 344 -----~~~iiI~TTN~~-------~~ld~aLlrpgR~d~~I~~~~p~~~~r~----~l~~~~l~ 391 (450)
-++-||++||.. ..+-+.|-- |+.+ +.+..|...+|+ -|+.+|+.
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLnV-~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLNV-VPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhcc-ceecCCcccccchhHHHHHHHHHH
Confidence 135688888864 123334443 5544 555555555544 46777663
No 227
>PHA02624 large T antigen; Provisional
Probab=98.53 E-value=5.1e-07 Score=95.97 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=81.8
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCccccc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
|+|.++.+|||||||||||+++.+|++.++-.++.++.+. +.++--+.-+...-+.+|||+-.-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~------ 496 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKD------ 496 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccccccc------
Confidence 6788899999999999999999999999976666676443 233334444556678999999533210000
Q ss_pred CCCCCCchhhHHhHHHHhhcccccCCCC----------eEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q 013083 318 GHNQGDNKVTLSGLLNFIDGLWSCCSEG----------RIIIFTTNHKEKLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 318 ~~~~~~~~~~l~~LL~~ldg~~~~~~~~----------~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~ 376 (450)
-..+..-..+..|-+.+||...-+-+. --.|.|||. ..|+..+.- ||..++.|..
T Consensus 497 -Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 497 -LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred -CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 001122223567778888862211100 136678886 457888888 9988888765
No 228
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1e-06 Score=86.87 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhh-CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRV-GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
++|+.+.|+.+.=.|..-..+.+.-..+ .--.|.++|..||.|+|||-+|+-+|+..+.||+.+..+.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 6889999888866555433322211111 12236899999999999999999999999999999977665
No 229
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.52 E-value=6.2e-07 Score=91.17 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=102.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec--------
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL-------- 275 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~-------- 275 (450)
...|.-++|++..|..+.-... .| .-.|+|+-|+.|||||++++|||.-|.---....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av----~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV----DP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc----cc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 3468889999999988755432 11 23589999999999999999999988321111111
Q ss_pred ------------------------------CccCCch------hHHHHHhc-----------CCCceEEEEEcccccccc
Q 013083 276 ------------------------------TDVQSNS------DLRSLLLS-----------MPSRSMLVIEDIDCSITL 308 (450)
Q Consensus 276 ------------------------------~~~~~~~------~L~~l~~~-----------~~~~sIlviDdiD~l~~~ 308 (450)
....++. ++.+.+.. ..++.|++|||+..+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 1111111 22222221 1367899999997663
Q ss_pred cccCcccccCCCCCCchhhHHhHHHHhhcc---------cccCCCCeEEEEEcCCC-CCCCccccCCCcceeEEEeCCC-
Q 013083 309 ENRDSKDQAGHNQGDNKVTLSGLLNFIDGL---------WSCCSEGRIIIFTTNHK-EKLDPALLRPGRMDMHIHMSYC- 377 (450)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~---------~~~~~~~~iiI~TTN~~-~~ld~aLlrpgR~d~~I~~~~p- 377 (450)
......||+.+..- .-..+-..++|+|+|.- ..|-|.|+. ||..+|.+.+|
T Consensus 158 ----------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~ 219 (423)
T COG1239 158 ----------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPL 219 (423)
T ss_pred ----------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCC
Confidence 24667777776542 22223457889999976 468899999 99999999887
Q ss_pred CHHHHHHHHHHHhC
Q 013083 378 TASVFEQLAFNYLG 391 (450)
Q Consensus 378 ~~~~r~~l~~~~l~ 391 (450)
+.++|.++..+-+.
T Consensus 220 ~~~~rv~Ii~r~~~ 233 (423)
T COG1239 220 DLEERVEIIRRRLA 233 (423)
T ss_pred CHHHHHHHHHHHHH
Confidence 45777787776554
No 230
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.51 E-value=3.8e-06 Score=88.53 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=96.3
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L 284 (450)
..+++......++...+...... ...+++.|.+||||+++++++.... +.+++.++|..+.. +.+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHH
Confidence 45777777777777776553322 3579999999999999999999875 56899999998833 333
Q ss_pred HHHH-h-----------------cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-ccCC--
Q 013083 285 RSLL-L-----------------SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SCCS-- 343 (450)
Q Consensus 285 ~~l~-~-----------------~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~~~-- 343 (450)
...+ . ....++.|+|||||.+.. .....|+..++.-. ...+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------~~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------DAQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------HHHHHHHHHHhcCcEEECCCC
Confidence 3322 2 112467899999998732 23445565554221 1001
Q ss_pred ----CCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhC
Q 013083 344 ----EGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCT--ASVFEQLAFNYLG 391 (450)
Q Consensus 344 ----~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~--~~~r~~l~~~~l~ 391 (450)
-+.-||+||+.. ..+.++|.. |+. .+|++|... .+....|+..|+.
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 123466666543 233445554 554 477888776 4667778877774
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.51 E-value=7.9e-07 Score=93.48 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=62.6
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchh
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSD 283 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 283 (450)
+..+++.......+.+.+...... ...+|++|++||||+++++++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 445666666666666666555432 3579999999999999999998875 57999999998843 23
Q ss_pred HHH-HHhc-----------------CCCceEEEEEcccccc
Q 013083 284 LRS-LLLS-----------------MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 284 L~~-l~~~-----------------~~~~sIlviDdiD~l~ 306 (450)
+.. +|.. ....++|||||||.+.
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~ 250 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP 250 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC
Confidence 332 2221 1245789999999883
No 232
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.6e-06 Score=81.45 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcC----------------------CcEEEEecCc-cCCchhHHHHHhcC---C--
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLK----------------------FDIYDLDLTD-VQSNSDLRSLLLSM---P-- 292 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~----------------------~~~~~l~~~~-~~~~~~L~~l~~~~---~-- 292 (450)
.+..+||+||+|+||..+|.++|..+- -+++.+.... .-.-++++++.... +
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 457899999999999999999998871 1233322111 11234445544332 2
Q ss_pred --CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q 013083 293 --SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDM 370 (450)
Q Consensus 293 --~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~ 370 (450)
..-|++|+++|.+- ....+.||..++.- +.+.++|++|+.++.+.|.+++ |+..
T Consensus 86 ~~~~KV~II~~ae~m~------------------~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--RCq~ 141 (261)
T PRK05818 86 SNGKKIYIIYGIEKLN------------------KQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--RCVQ 141 (261)
T ss_pred cCCCEEEEeccHhhhC------------------HHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--heee
Confidence 35699999999873 35678999998863 6788999999999999999999 9865
Q ss_pred EEEeCCC
Q 013083 371 HIHMSYC 377 (450)
Q Consensus 371 ~I~~~~p 377 (450)
+.++.+
T Consensus 142 -~~~~~~ 147 (261)
T PRK05818 142 -YVVLSK 147 (261)
T ss_pred -eecCCh
Confidence 667766
No 233
>PHA00729 NTP-binding motif containing protein
Probab=98.45 E-value=9.7e-07 Score=83.82 Aligned_cols=180 Identities=17% Similarity=0.234 Sum_probs=88.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEE----------------EecCccCCchhHHHHHhcCCCceEEEEEcccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYD----------------LDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSI 306 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~----------------l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~ 306 (450)
..++|+|+||||||++|.+||+.++..+.. ++..++ ...|...+.......+|+|||+..-.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~L--l~~L~~a~~~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDA--LEKIQDAIDNDYRIPLIIFDDAGIWL 95 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHH--HHHHHHHHhcCCCCCEEEEeCCchhh
Confidence 479999999999999999999997643332 222221 12233333333334689999975432
Q ss_pred cccccCcccccCCCCCCc---hhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeC-CCCHHHH
Q 013083 307 TLENRDSKDQAGHNQGDN---KVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMS-YCTASVF 382 (450)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~---~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~-~p~~~~r 382 (450)
. ..... ......+.+.+.. ...++++++..++.+-..|...|=....|.=. .-....+
T Consensus 96 ~------------~~~wh~~~~~~yf~L~~aLrS------R~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en~~~~~~~~ 157 (226)
T PHA00729 96 S------------KYVWYEDYMKTFYKIYALIRT------RVSAVIFTTPSPEDLAFYLREKGWYQIRVTMVNRKTMTAR 157 (226)
T ss_pred c------------ccchhhhccchHHHHHHHHHh------hCcEEEEecCCHHHHHHHHHhCCCcHHHhhhcccCcccch
Confidence 1 00000 0122223333321 23467888888887777777644443333311 1122344
Q ss_pred HHHHHHHhCccC-CCcHHHHHH-HHhcCCC-CHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh
Q 013083 383 EQLAFNYLGISH-HHLFEQIEE-MLMKVNV-TPAEVAGELMKSKCKYAEISLQGIVKFLHAKM 442 (450)
Q Consensus 383 ~~l~~~~l~~~~-~~l~~ei~~-l~~~~~~-spa~i~~~L~~~~~~~~~~al~~l~~~l~~~~ 442 (450)
..+++.+..... ......+.. ..+-..+ -|.++-+.-++...+....-++.|.+.|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~y~ey~~~r~~~~~~~~~~~~~~~~~~~ 220 (226)
T PHA00729 158 ATLYSKDFGRNSKGEIVTQVKKKALDLFKVQIPNDIYKEYMQRRKETERKLLQELRQILSTLN 220 (226)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHHHHhHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556655554432 222111211 1121111 25555444443233344555566666555443
No 234
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=7.9e-06 Score=80.58 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=81.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC----------------CcEEEEecCcc---CCchhHHHHHhcCC------CceE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK----------------FDIYDLDLTDV---QSNSDLRSLLLSMP------SRSM 296 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~----------------~~~~~l~~~~~---~~~~~L~~l~~~~~------~~sI 296 (450)
+..|||+||+|+||+.+|.++|..+- -+++.+....- -+-+.++.+..... ..-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 46899999999999999999999872 13444422211 12345555544432 3459
Q ss_pred EEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q 013083 297 LVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 297 lviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~ 376 (450)
++||++|.+- ....+.||..++.- +++.++|+.|+.++.+.|.+++ |+.. +.|+.
T Consensus 99 ~ii~~ad~mt------------------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rcq~-~~~~~ 153 (290)
T PRK05917 99 YIIHEADRMT------------------LDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RSLS-IHIPM 153 (290)
T ss_pred EEEechhhcC------------------HHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cceE-EEccc
Confidence 9999999873 34678899999873 5778999999999999999999 8855 77775
Q ss_pred C
Q 013083 377 C 377 (450)
Q Consensus 377 p 377 (450)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 235
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.7e-06 Score=81.35 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=90.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc--------C---C--cEEEEe--cCccCCchhHHHHHhcCC-------CceEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL--------K---F--DIYDLD--LTDVQSNSDLRSLLLSMP-------SRSMLVI 299 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l--------~---~--~~~~l~--~~~~~~~~~L~~l~~~~~-------~~sIlvi 299 (450)
...|||+|+.|.||+.++.++|+.+ + . ++..++ ...+ +-++++.+....+ .+-|++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-SKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-CHHHHHHHHHHhccCCcccCCceEEEE
Confidence 4689999999999999999999987 1 1 233344 2222 3356666655442 5679999
Q ss_pred EcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCH
Q 013083 300 EDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTA 379 (450)
Q Consensus 300 DdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~ 379 (450)
|++|.+- ....+.||..++.. ++..++|++|+.++++-|++++ |+.. ++++.++.
T Consensus 97 ~~~e~m~------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc~~-~~f~~l~~ 151 (299)
T PRK07132 97 KNIEKTS------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RCQV-FNVKEPDQ 151 (299)
T ss_pred ecccccC------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--CeEE-EECCCCCH
Confidence 9998762 34567899988874 5678888888888999999999 8755 99999998
Q ss_pred HHHHHHHHH
Q 013083 380 SVFEQLAFN 388 (450)
Q Consensus 380 ~~r~~l~~~ 388 (450)
++....+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887765554
No 236
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.43 E-value=5.6e-06 Score=80.29 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=36.7
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
..++|+...++.. ..+...++.+. -..|++||.||||||||.||-+|++++|
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 5568887776643 22222333222 2258999999999999999999999995
No 237
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.42 E-value=1.6e-06 Score=96.55 Aligned_cols=175 Identities=19% Similarity=0.283 Sum_probs=118.3
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcC-hhHHhhhCCCC-Cc-eeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNG-KEYYTRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~-~~~~~~~g~~~-~r-giLL~GppGTGKTsla~alA~~l~~ 268 (450)
..|.. .+.|.....+.+....-..+.+++..+-.. +.-|..-+... .. .+|++||||.|||+.+.++|..+++
T Consensus 308 ~~~~~----k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~ 383 (871)
T KOG1968|consen 308 AGWTE----KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF 383 (871)
T ss_pred ccccc----ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc
Confidence 35766 778888888888888888888888877322 11222222111 12 3689999999999999999999999
Q ss_pred cEEEEecCccCCchhHHHHHhcCC--------------------CceEEEEEcccccccccccCcccccCCCCCCchhhH
Q 013083 269 DIYDLDLTDVQSNSDLRSLLLSMP--------------------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTL 328 (450)
Q Consensus 269 ~~~~l~~~~~~~~~~L~~l~~~~~--------------------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l 328 (450)
.+++.|.+...+...+...+..+. ...||++||+|.+.. ..+..+
T Consensus 384 ~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~---------------~dRg~v 448 (871)
T KOG1968|consen 384 KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG---------------EDRGGV 448 (871)
T ss_pred ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc---------------hhhhhH
Confidence 999999998877665555443321 124899999998753 122223
Q ss_pred HhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 329 SGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 329 ~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
..+-..+.. -.+-||+|||.........+. |....|+|+.|+..++..-+..++..+
T Consensus 449 ~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 449 SKLSSLCKK------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred HHHHHHHHh------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 333333321 224589999987765553343 555678999999999887777666544
No 238
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1e-05 Score=80.03 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=83.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC------------------------CcEEEEecCcc-CCchhHHHHHhcCC----
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK------------------------FDIYDLDLTDV-QSNSDLRSLLLSMP---- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~------------------------~~~~~l~~~~~-~~~~~L~~l~~~~~---- 292 (450)
+.+|||+|| +||+++|.++|..+- -+++.+....- -.-+.++.+.....
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 568999996 689999999998762 12333332211 12356666654432
Q ss_pred --CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q 013083 293 --SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDM 370 (450)
Q Consensus 293 --~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~ 370 (450)
..-|++||++|.+- ....+.||+.++.- +.+.++|++|+.++.+-|.+++ |+..
T Consensus 102 ~~~~kV~II~~ad~m~------------------~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rcq~ 157 (290)
T PRK07276 102 EGKQQVFIIKDADKMH------------------VNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RTQI 157 (290)
T ss_pred cCCcEEEEeehhhhcC------------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--ccee
Confidence 35699999999873 34678899999863 5678999999999999999999 8854
Q ss_pred EEEeCCCCHHHHHHHHH
Q 013083 371 HIHMSYCTASVFEQLAF 387 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~ 387 (450)
|.|+. +.+...+++.
T Consensus 158 -i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 158 -FHFPK-NEAYLIQLLE 172 (290)
T ss_pred -eeCCC-cHHHHHHHHH
Confidence 88876 5555444443
No 239
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.41 E-value=6.6e-07 Score=94.67 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=76.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCc--EEEEecCccC---------------------CchhHHHHHh---------
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFD--IYDLDLTDVQ---------------------SNSDLRSLLL--------- 289 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~--~~~l~~~~~~---------------------~~~~L~~l~~--------- 289 (450)
...++|.||||||||++++.++..+.-. -..++.+.+. .......++.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 4679999999999999999999876311 0112211110 0111122222
Q ss_pred -cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhc-cc--c------cCCCCeEEEEEcCCCC---
Q 013083 290 -SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG-LW--S------CCSEGRIIIFTTNHKE--- 356 (450)
Q Consensus 290 -~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg-~~--~------~~~~~~iiI~TTN~~~--- 356 (450)
......+|||||++.+ ...++..|++.|+. .. . ..+.+..+|+|+|...
T Consensus 290 l~~A~gGvLfLDEi~e~------------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 290 ISLAHNGVLFLDELPEF------------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred hhhccCCEEecCCchhC------------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 2235689999999765 23567777777742 21 0 0134568899998753
Q ss_pred ------------------CCCccccCCCcceeEEEeCCCCHH
Q 013083 357 ------------------KLDPALLRPGRMDMHIHMSYCTAS 380 (450)
Q Consensus 357 ------------------~ld~aLlrpgR~d~~I~~~~p~~~ 380 (450)
++..+++. |||+++.+++++.+
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 47778999 99999999999765
No 240
>PRK15115 response regulator GlrR; Provisional
Probab=98.41 E-value=7.3e-06 Score=85.95 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=58.0
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHH
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRS 286 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~ 286 (450)
+++.......+++.+...... ...++++|++||||+++|+++.... +.+++.++|..+.. ..+..
T Consensus 136 lig~s~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~ 203 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQS-----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLES 203 (444)
T ss_pred ccccCHHHHHHHHHHHhhccC-----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHH
Confidence 455555555555544433221 3579999999999999999999886 47999999998743 33332
Q ss_pred -HHhc-----------------CCCceEEEEEcccccc
Q 013083 287 -LLLS-----------------MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 287 -l~~~-----------------~~~~sIlviDdiD~l~ 306 (450)
+|.. ...++.|||||||.+.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 241 (444)
T PRK15115 204 ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 (444)
T ss_pred HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC
Confidence 2211 1245789999999883
No 241
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.40 E-value=1.7e-06 Score=96.16 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=80.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC-------cEEEEecCccCC-chhH-HHH-----HhcCCCceEEEEEcccccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF-------DIYDLDLTDVQS-NSDL-RSL-----LLSMPSRSMLVIEDIDCSITL 308 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~-------~~~~l~~~~~~~-~~~L-~~l-----~~~~~~~sIlviDdiD~l~~~ 308 (450)
..+||.|+||||||.+++++++.... ++..++++.... .... ... .......++++|||+|.+.
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms-- 570 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH-- 570 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC--
Confidence 36999999999999999999986543 334444433211 0000 000 0112346899999999873
Q ss_pred cccCcccccCCCCCCchhhHHhHHHHhhccc---------ccCCCCeEEEEEcCCCC-------------CCCccccCCC
Q 013083 309 ENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGRIIIFTTNHKE-------------KLDPALLRPG 366 (450)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~iiI~TTN~~~-------------~ld~aLlrpg 366 (450)
......|+..|+.-. .......-||+|+|..+ .|+++|++
T Consensus 571 ----------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS-- 632 (915)
T PTZ00111 571 ----------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT-- 632 (915)
T ss_pred ----------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--
Confidence 234456666664321 11224567889998752 36799999
Q ss_pred cceeEEE-eCCCCHHHHHHHHHHHh
Q 013083 367 RMDMHIH-MSYCTASVFEQLAFNYL 390 (450)
Q Consensus 367 R~d~~I~-~~~p~~~~r~~l~~~~l 390 (450)
|||...- ++.|+.+.=+.|+.+.+
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred hhcEEEEecCCCChHHHHHHHHHHH
Confidence 9998754 57788776666665544
No 242
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.39 E-value=5.4e-06 Score=96.87 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=89.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcE---EEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDI---YDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~---~~l~~~~ 277 (450)
...+..++.++|.++..+++...+.. . ....+-+-|+||+|+||||||+++++.+...+ +.++...
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~l--~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLHL--E---------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHcc--c---------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 34556789999998888887765531 1 12246788999999999999999998874322 1121100
Q ss_pred c-------C-----C--------chhHHHHHhc---------------CCCceEEEEEcccccccccccCcccccCCCCC
Q 013083 278 V-------Q-----S--------NSDLRSLLLS---------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQG 322 (450)
Q Consensus 278 ~-------~-----~--------~~~L~~l~~~---------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~ 322 (450)
+ . . ...+..++.. ..++.+|||||++..
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------- 308 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------- 308 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------
Confidence 0 0 0 0001111111 135789999998742
Q ss_pred CchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 323 DNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 323 ~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
..+..+....+. . +.+..||+||.+. .+++...++..++++.|+.++-.+|+..+...
T Consensus 309 ---~~l~~L~~~~~~--~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 309 ---DVLDALAGQTQW--F--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred ---HHHHHHHhhCcc--C--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 123333322221 1 2334455566643 33333346778999999999988998877643
No 243
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=2.8e-06 Score=75.86 Aligned_cols=132 Identities=22% Similarity=0.327 Sum_probs=72.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC---------cEEEEecCccCCch---hHHHHH------------------hcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF---------DIYDLDLTDVQSNS---DLRSLL------------------LSMP 292 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~---------~~~~l~~~~~~~~~---~L~~l~------------------~~~~ 292 (450)
|-++|+|+||+|||++++.++..+.. -++.+.+.+..... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 45789999999999999999987721 12234444332211 222222 2234
Q ss_pred CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHH-HHhhcccccCCCCeEEEEEcCCCC-CCCccccCCCccee
Q 013083 293 SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLL-NFIDGLWSCCSEGRIIIFTTNHKE-KLDPALLRPGRMDM 370 (450)
Q Consensus 293 ~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL-~~ldg~~~~~~~~~iiI~TTN~~~-~ld~aLlrpgR~d~ 370 (450)
.+.+|+||.+|.+.... .......+..++ ..+... ..+.-+++|.+..... .+...+.. ..
T Consensus 81 ~~~llilDglDE~~~~~-----------~~~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~~~~~~~~~~~----~~ 143 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQD-----------QSQERQRLLDLLSQLLPQA--LPPGVKLIITSRPRAFPDLRRRLKQ----AQ 143 (166)
T ss_pred CceEEEEechHhcccch-----------hhhHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCChHHHHHHhcCC----Cc
Confidence 57799999999875300 000111122222 222221 1123344444433221 12222222 15
Q ss_pred EEEeCCCCHHHHHHHHHHHhC
Q 013083 371 HIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.++++..+.++.+++++.|+.
T Consensus 144 ~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 144 ILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEEECCCCHHHHHHHHHHHhh
Confidence 689999999999999999875
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.37 E-value=1.9e-05 Score=84.59 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=94.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEecCcc
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDLTDV 278 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~~~~ 278 (450)
.|..-+....+|-+.+..|+... .....+++.|-||||||.++..+-+.| .++++.+|...+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 34444444444544444444321 113478899999999999999999976 467788887776
Q ss_pred CCc----------------------hhHHHHHh---cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH
Q 013083 279 QSN----------------------SDLRSLLL---SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN 333 (450)
Q Consensus 279 ~~~----------------------~~L~~l~~---~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 333 (450)
.+. +.|..-|. ....++||+|||.|.|+. ..+ .-|-|
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------------r~Q---dVlYn 530 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT---------------RSQ---DVLYN 530 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---------------ccH---HHHHH
Confidence 432 22222333 123578999999999863 122 33556
Q ss_pred HhhcccccCCCCeEEEEEcCCCCCCCccccC---CCcce-eEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 334 FIDGLWSCCSEGRIIIFTTNHKEKLDPALLR---PGRMD-MHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 334 ~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlr---pgR~d-~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
++|..... +...+||+..|..+ |++.++- ..|++ ..|.|...+.+|..+|+...|...
T Consensus 531 ~fdWpt~~-~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 531 IFDWPTLK-NSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HhcCCcCC-CCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 66654332 23344555555543 3333321 01444 237788889999999999877544
No 245
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.1e-05 Score=82.88 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=105.0
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCccCCc
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDVQSN 281 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~~~~ 281 (450)
=+++.|-+.....+.+++...+.... ..++.+.|-||||||.+..-+-..+ ....+.++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t---------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNT---------SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhccc---------CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 46788888888888887777766433 5679999999999999888666655 235588999886432
Q ss_pred hh---------------------HHHHHhc----CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhh
Q 013083 282 SD---------------------LRSLLLS----MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFID 336 (450)
Q Consensus 282 ~~---------------------L~~l~~~----~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 336 (450)
.. ..+.|.. ...+-++|+||+|.++. + .+.++-.+.. .+
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r------------~~~vLy~lFe-wp 283 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---R------------SQTVLYTLFE-WP 283 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---c------------ccceeeeehh-cc
Confidence 11 1111211 12467999999999963 1 1122222221 12
Q ss_pred cccccCCCCeEEEEEcCCCCCCCcccc----CCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 337 GLWSCCSEGRIIIFTTNHKEKLDPALL----RPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 337 g~~~~~~~~~iiI~TTN~~~~ld~aLl----rpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
. ......++|+..|..+.-|..|- +-+.-...+.|++.+.++..+|++.-+...
T Consensus 284 ~---lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 284 K---LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred c---CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 2 22356788888998876554442 234455678999999999999999888655
No 246
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.34 E-value=7.5e-06 Score=80.63 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCccCCchhHHHH-
Q 013083 218 KAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTDVQSNSDLRSL- 287 (450)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~L~~l- 287 (450)
+++++.+..-+..|.- .-..++||+|++|.|||++++..+... ..|++.++...--++..+-..
T Consensus 43 ~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 4556666666665541 113589999999999999999998755 247777776554333332211
Q ss_pred H-----------------------hcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC
Q 013083 288 L-----------------------LSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE 344 (450)
Q Consensus 288 ~-----------------------~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~ 344 (450)
+ ....+.-+|+|||++.++.. .... ...+||.+..+.....-
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG------------s~~~---qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG------------SYRK---QREFLNALKFLGNELQI 181 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc------------cHHH---HHHHHHHHHHHhhccCC
Confidence 1 11224558999999997641 1112 23344444443222222
Q ss_pred CeEEEEEcCCC--CCCCccccCCCcceeEEEeCCCCH-HHHHHHHHHHh
Q 013083 345 GRIIIFTTNHK--EKLDPALLRPGRMDMHIHMSYCTA-SVFEQLAFNYL 390 (450)
Q Consensus 345 ~~iiI~TTN~~--~~ld~aLlrpgR~d~~I~~~~p~~-~~r~~l~~~~l 390 (450)
..+.|+|-.-. =.-|+.+.+ ||+. +.+|.... +++..|+..|-
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e 227 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFE 227 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHH
Confidence 34444443222 234788888 9987 67776443 45666666554
No 247
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.33 E-value=2.3e-05 Score=85.39 Aligned_cols=50 Identities=34% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
..++.++|.++.++.+...+. . +++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----~-----------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----Q-----------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----c-----------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 457889999888776655443 1 2589999999999999999999999644
No 248
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.33 E-value=9.2e-07 Score=90.20 Aligned_cols=96 Identities=17% Similarity=0.357 Sum_probs=61.8
Q ss_pred CCCCceeeeeCCCCCchHHHHHHHHHHcCCc-EEEEecCcc-----------C-CchhHHHHHhcCCCc-eEEEEEcccc
Q 013083 239 KAWKRGYLLYGPPGTGKSSLIAAMANHLKFD-IYDLDLTDV-----------Q-SNSDLRSLLLSMPSR-SMLVIEDIDC 304 (450)
Q Consensus 239 ~~~~rgiLL~GppGTGKTsla~alA~~l~~~-~~~l~~~~~-----------~-~~~~L~~l~~~~~~~-sIlviDdiD~ 304 (450)
.+.++|++||||+|+|||+|..+..+.+... -..+....+ . ....+..+.....+. .+|+|||++.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 4568999999999999999999999887541 111111111 0 122233333333333 4999999975
Q ss_pred cccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 305 SITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
- +..+..++..|+..+= . .++++|+|+|.+
T Consensus 139 ~---------------DiaDAmil~rLf~~l~---~---~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T---------------DIADAMILKRLFEALF---K---RGVVLVATSNRP 168 (362)
T ss_pred c---------------chhHHHHHHHHHHHHH---H---CCCEEEecCCCC
Confidence 3 2334567777877652 2 678999999975
No 249
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.33 E-value=4.2e-06 Score=89.02 Aligned_cols=161 Identities=22% Similarity=0.276 Sum_probs=97.6
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhC-CCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc--------C
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVG-KAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV--------Q 279 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~--------~ 279 (450)
++.+.+++|+.++-.| |=.....+...| ..-.-+|||+|.||||||.|.+.+++.+..-+|.---.+- .
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4567777888775543 443333344433 1123469999999999999999999988666654321110 0
Q ss_pred CchhHHHHHhcC-----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhh---------cccccCCCC
Q 013083 280 SNSDLRSLLLSM-----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFID---------GLWSCCSEG 345 (450)
Q Consensus 280 ~~~~L~~l~~~~-----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld---------g~~~~~~~~ 345 (450)
-+.+-++++.+. ...+|..|||+|.+.. .+-+.|+..|+ |+..+-+..
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------StrSvLhEvMEQQTvSIAKAGII~sLNAR 569 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------STRSVLHEVMEQQTLSIAKAGIIASLNAR 569 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH------------------HHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence 112223333332 3678999999998832 12233444443 333333334
Q ss_pred eEEEEEcCCCC-------------CCCccccCCCcceeEEE-eCCCCHHHHHHHHHHHhC
Q 013083 346 RIIIFTTNHKE-------------KLDPALLRPGRMDMHIH-MSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 346 ~iiI~TTN~~~-------------~ld~aLlrpgR~d~~I~-~~~p~~~~r~~l~~~~l~ 391 (450)
.-|+++.|..+ .|+|.|++ |||.+.- +..|++..=+.|..+...
T Consensus 570 ~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 570 CSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred ceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 45788888432 37899999 9998654 477887755666666554
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.32 E-value=1.4e-05 Score=78.49 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=76.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH--cC--Cc-EEEEecCccCCch------------------------hHHHHHhc--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH--LK--FD-IYDLDLTDVQSNS------------------------DLRSLLLS-- 290 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~--l~--~~-~~~l~~~~~~~~~------------------------~L~~l~~~-- 290 (450)
.+.+.|+|++|+|||+||..+++. .. ++ ++-++++...+.. .+...+.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 467889999999999999999987 32 22 2334443321111 11111111
Q ss_pred CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q 013083 291 MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDM 370 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~ 370 (450)
...+++|||||++... .+..+...+... ..+.-||.||....- -...- .-..
T Consensus 99 ~~~~~LlVlDdv~~~~--------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v-~~~~~---~~~~ 150 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE--------------------DLEELREPLPSF----SSGSKILVTTRDRSV-AGSLG---GTDK 150 (287)
T ss_dssp CCTSEEEEEEEE-SHH--------------------HH-------HCH----HSS-EEEEEESCGGG-GTTHH---SCEE
T ss_pred ccccceeeeeeecccc--------------------cccccccccccc----ccccccccccccccc-ccccc---cccc
Confidence 1248999999997431 222222222111 123345666654321 11111 1156
Q ss_pred EEEeCCCCHHHHHHHHHHHhCccC----CCcHHHHHHHHhcCCCCHHHH
Q 013083 371 HIHMSYCTASVFEQLAFNYLGISH----HHLFEQIEEMLMKVNVTPAEV 415 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~l~~~~----~~l~~ei~~l~~~~~~spa~i 415 (450)
.++++..+.++-.+++..+..... ..+.+...++++..+-.|--+
T Consensus 151 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 151 VIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp EEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999876543 233444556666666565443
No 251
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=8.9e-07 Score=76.37 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=30.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc--------CCcEEEEecCccC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL--------KFDIYDLDLTDVQ 279 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l--------~~~~~~l~~~~~~ 279 (450)
++.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4678999999999999999999988 7788888777654
No 252
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.30 E-value=2.4e-05 Score=81.88 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=60.0
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHH
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLR 285 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~ 285 (450)
.+++.......+.+.+..+.. ....++++|.+||||+++++++.... +.+++.++|..+.. ..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~-----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP-----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC-----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHH
Confidence 355666666666665543321 13679999999999999999998765 47899999998743 3344
Q ss_pred HHH-hc-----------------CCCceEEEEEcccccc
Q 013083 286 SLL-LS-----------------MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 286 ~l~-~~-----------------~~~~sIlviDdiD~l~ 306 (450)
..+ .. ...+++|+|||||.+.
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~ 246 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC
Confidence 332 21 1246789999999884
No 253
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.3e-06 Score=90.07 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=39.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...|.++.|++..|+.+.-... -..++|++||||||||++++-|..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999988744321 15789999999999999999988766
No 254
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.6e-06 Score=91.33 Aligned_cols=123 Identities=24% Similarity=0.313 Sum_probs=81.5
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCC-CCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC---
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA-WKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS--- 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~--- 280 (450)
+.++|+++....|-+.+.....+ ++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 45678888877777777655431 1122 33458899999999999999999998 45688999987321
Q ss_pred ----------chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC-----
Q 013083 281 ----------NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS----- 343 (450)
Q Consensus 281 ----------~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~----- 343 (450)
.+..-++.... ...+||+|||||.. ....++.|+..+|...-..+
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA------------------h~~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA------------------HPDVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc------------------CHHHHHHHHHHHhcCccccCCCcEe
Confidence 12222333332 34689999999854 23466777777774332222
Q ss_pred --CCeEEEEEcCC
Q 013083 344 --EGRIIIFTTNH 354 (450)
Q Consensus 344 --~~~iiI~TTN~ 354 (450)
.+.|||+|+|.
T Consensus 698 d~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 698 DFKNAIFIMTSNV 710 (898)
T ss_pred eccceEEEEeccc
Confidence 34699999885
No 255
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.23 E-value=1.6e-05 Score=82.23 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=68.1
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCch
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNS 282 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 282 (450)
.+..++|......++++.++--..+ ...|||.|.+||||..+|++|.+.. +.|++.+||+.+-..-
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 5788999999999999988755443 3589999999999999999999987 5699999999983211
Q ss_pred hHHHHHhc-----------------CCCceEEEEEccccc
Q 013083 283 DLRSLLLS-----------------MPSRSMLVIEDIDCS 305 (450)
Q Consensus 283 ~L~~l~~~-----------------~~~~sIlviDdiD~l 305 (450)
-=.++|.. +..++-||+|||.-+
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 11223321 135678999999765
No 256
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.16 E-value=1.8e-05 Score=85.49 Aligned_cols=120 Identities=17% Similarity=0.100 Sum_probs=85.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecCcc----CCchhHHHHHhc-----------CCCceEEEEEccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLTDV----QSNSDLRSLLLS-----------MPSRSMLVIEDIDCS 305 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~~~----~~~~~L~~l~~~-----------~~~~sIlviDdiD~l 305 (450)
.|+||-|++|||||+++++++..+.. ||..+..+.- -..-+|...+.. ...+.|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999854 7776654432 122333333322 224689999999765
Q ss_pred ccccccCcccccCCCCCCchhhHHhHHHHhhcc---------cccCCCCeEEEEEcCCC---CCCCccccCCCcceeEEE
Q 013083 306 ITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL---------WSCCSEGRIIIFTTNHK---EKLDPALLRPGRMDMHIH 373 (450)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~---------~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d~~I~ 373 (450)
...+++.|+..|+.- ....+...++|+|-|.. ..|.++++. ||+++|.
T Consensus 106 ------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 106 ------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 346888999888632 22223445677764433 458999999 9999999
Q ss_pred eCCCCHHHH
Q 013083 374 MSYCTASVF 382 (450)
Q Consensus 374 ~~~p~~~~r 382 (450)
+++++..+.
T Consensus 166 v~~~~~~~~ 174 (584)
T PRK13406 166 LDGLALRDA 174 (584)
T ss_pred cCCCChHHh
Confidence 999987653
No 257
>PHA02774 E1; Provisional
Probab=98.15 E-value=1.4e-05 Score=84.86 Aligned_cols=58 Identities=24% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEE-EecCccCCchhHHHHHhcCCCceEEEEEcc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYD-LDLTDVQSNSDLRSLLLSMPSRSMLVIEDI 302 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~-l~~~~~~~~~~L~~l~~~~~~~sIlviDdi 302 (450)
|.|.+++++||||||||||+++.+|++.++..++. ++..+ .-.+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 45667899999999999999999999999765544 55321 111334445679999999
No 258
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.12 E-value=6.7e-06 Score=80.13 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCC-CceeeeeCCCCCchHHHHHHHHHHcC-----CcEE-----EEecC
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW-KRGYLLYGPPGTGKSSLIAAMANHLK-----FDIY-----DLDLT 276 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rgiLL~GppGTGKTsla~alA~~l~-----~~~~-----~l~~~ 276 (450)
..|.|++-+++.|+..++.++.++. |- +-.+=|||+|||||+..++.||+.+- .+++ ..++.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 4578999999999999999998754 11 12334999999999999999999872 2222 12222
Q ss_pred ccCC----chhHHHHHhc---CCCceEEEEEccccc
Q 013083 277 DVQS----NSDLRSLLLS---MPSRSMLVIEDIDCS 305 (450)
Q Consensus 277 ~~~~----~~~L~~l~~~---~~~~sIlviDdiD~l 305 (450)
.-.. ..+|+..+.. ...++|.++||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 2111 1223333322 357899999999987
No 259
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.10 E-value=1.8e-05 Score=90.56 Aligned_cols=127 Identities=23% Similarity=0.372 Sum_probs=92.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHH--------------------HHhcCCCceEEEEEc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRS--------------------LLLSMPSRSMLVIED 301 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~--------------------l~~~~~~~sIlviDd 301 (450)
.+++||-|.||+|||+|+.|+|+..|-.++.+++++-. +|-. ++..++++.-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 47899999999999999999999999999999988742 2222 344455677888999
Q ss_pred ccccccccccCcccccCCCCCCchhhHHhHHHHhhc-----------ccccCCCCeEEEEEcCCC------CCCCccccC
Q 013083 302 IDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG-----------LWSCCSEGRIIIFTTNHK------EKLDPALLR 364 (450)
Q Consensus 302 iD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg-----------~~~~~~~~~iiI~TTN~~------~~ld~aLlr 364 (450)
+.-. .+..+.+|=..+|. ..+ |.++..|++|-|.- ..||..++.
T Consensus 1620 iNLa------------------SQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n 1680 (4600)
T COG5271 1620 INLA------------------SQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN 1680 (4600)
T ss_pred hhhh------------------HHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh
Confidence 9632 34455555544442 222 34455666666654 358999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 365 PGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 365 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
||.+ |.|...+......|+...++.-
T Consensus 1681 --RFsv-V~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1681 --RFSV-VKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred --hhhe-EEecccccchHHHHHHhhCCcc
Confidence 9976 8999999888888888777643
No 260
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.07 E-value=3.2e-05 Score=79.50 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=39.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecCccCCchhHHHHHhcCCCceEEEEEccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
..++++.||||||||+++.+++.+. -..-.....+.+-.+- -.+.+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCC
Confidence 3589999999999999999998872 1000111111111010 0134444567889999999865
No 261
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.04 E-value=1.8e-05 Score=73.70 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=61.2
Q ss_pred eeeeCCCCCchHHHHHHH-HHHc---CCcEEEEecCccC-----C--ch------------------hHHHHHhcCCCce
Q 013083 245 YLLYGPPGTGKSSLIAAM-ANHL---KFDIYDLDLTDVQ-----S--NS------------------DLRSLLLSMPSRS 295 (450)
Q Consensus 245 iLL~GppGTGKTsla~al-A~~l---~~~~~~l~~~~~~-----~--~~------------------~L~~l~~~~~~~s 295 (450)
++++|.||+|||+.|-.. .... |.+++. +...+. . .. .--......+.++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987665 4332 666665 444221 0 00 0111222234789
Q ss_pred EEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeC
Q 013083 296 MLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMS 375 (450)
Q Consensus 296 IlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~ 375 (450)
+|||||+...++. +... .......++.+... .-.+.-||++|.++..+|+.+++ +++.++++.
T Consensus 82 liviDEa~~~~~~--r~~~----------~~~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPS--RSWK----------GKKVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB-----T-----------T----HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEE
T ss_pred EEEEECChhhcCC--Cccc----------cccchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEE
Confidence 9999999998762 1110 01112333444332 23567899999999999999988 999998876
Q ss_pred CC
Q 013083 376 YC 377 (450)
Q Consensus 376 ~p 377 (450)
.+
T Consensus 145 k~ 146 (193)
T PF05707_consen 145 KL 146 (193)
T ss_dssp E-
T ss_pred ee
Confidence 54
No 262
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.01 E-value=0.0004 Score=64.24 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=96.5
Q ss_pred eEEEEeccCCCCcchHHHHHHHHhcccCCcccccceeeeecc----------------------CcCceEEEccCCCeEe
Q 013083 52 ITIVIEEFQGLSINEVFDAANVYLGSMATTSSAQRFQVMKSE----------------------KEKRIGTTLNRNEEIV 109 (450)
Q Consensus 52 ~ti~i~e~~~~~~n~~y~a~~~Yl~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~ 109 (450)
.|+.|+. .+++|+.+-.||+........+++.+.+.. +...+.+.|..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 5666665 468999999999988755533777776622 356899999999 555
Q ss_pred eccCCeeeEEEEEEeecccccccchhhcccccccCCcceEEEEEEcCcchhHHHHHhhHHHHHHHHHHHHcCceeEEEec
Q 013083 110 DVFGDLKLKWKFVCKQVQATKNRNLLQQDNNARLRSEVRHYELSFHRKQKDVVLNLYLPHVLEKAKAIKEENHMVKLHTV 189 (450)
Q Consensus 110 d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~vl~~~~~~~~~~r~~~l~~~ 189 (450)
..|+| +|..+.++.+....+. ....+.+.++|++...+.. ++.++|.+..+...+ .....+.+|..
T Consensus 101 F~y~G---~~~~~~R~~~~~~~~~--------~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~~--~~~~~t~Iy~~ 166 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRESNSYNS--------WTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYLK--KQKGKTTIYRA 166 (187)
T ss_pred EEECC---EEEEEEEEeccccccc--------cCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHHH--hcCCcEEEEeC
Confidence 66888 7999988874433221 1134578999999998765 777777776655532 33344559998
Q ss_pred CCCc--ccccccccCCCCCCccc
Q 013083 190 EYGC--WDANDMVLKHPMNFNTL 210 (450)
Q Consensus 190 ~~~~--w~~~~~~~~~p~~f~~l 210 (450)
.+.. |.. +...+++++++|
T Consensus 167 ~~~~~~W~~--~~~r~~RplsTV 187 (187)
T PF08740_consen 167 DGSEYRWRR--VASRPKRPLSTV 187 (187)
T ss_pred CCCCCCCcC--CCCcCCCCCCCC
Confidence 8766 998 767777888875
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=5.8e-06 Score=70.46 Aligned_cols=31 Identities=39% Similarity=0.769 Sum_probs=27.8
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
|+|.||||+||||+++.+|+.++++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.94 E-value=7.3e-05 Score=66.10 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=25.3
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
++|+||||+|||+++..++..+ +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999999987 455555544
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.90 E-value=3.1e-05 Score=72.72 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=33.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
|++...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67778889999999999999999988654 66788887765
No 266
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.90 E-value=1.6e-05 Score=84.48 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=52.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEec
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDL 275 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~ 275 (450)
+..-|+++.|.++.+++|++.+......- + ..++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 33458999999999999999886555421 1 124678899999999999999999988 568887755
No 267
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.90 E-value=8.5e-06 Score=82.39 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=83.8
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc----cC----C
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD----VQ----S 280 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~----~~----~ 280 (450)
++.|.+.+|+.|+-.+-.-..... -........-++||.|.||||||.|.+.+++.....+|.---+. +. .
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 356777777776543321111000 00000111346999999999999999999877766665432111 10 0
Q ss_pred chhHHHHHhc-----CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc---------ccCCCCe
Q 013083 281 NSDLRSLLLS-----MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGR 346 (450)
Q Consensus 281 ~~~L~~l~~~-----~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~ 346 (450)
+..-.....+ ...++|++|||+|.+-. .....|+..|+.-. ..-+-..
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~~~------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKMKE------------------DDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT--C------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred ccccceeEEeCCchhcccCceeeecccccccc------------------hHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 1000001111 13678999999997721 23556677776321 1111234
Q ss_pred EEEEEcCCCC-------------CCCccccCCCcceeEEEe-CCCCHHHHHHHHHHHhCc
Q 013083 347 IIIFTTNHKE-------------KLDPALLRPGRMDMHIHM-SYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 347 iiI~TTN~~~-------------~ld~aLlrpgR~d~~I~~-~~p~~~~r~~l~~~~l~~ 392 (450)
-|++++|... .+++.|++ |||..+.+ ..++.+.=..+.++.+..
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 6788888764 47889999 99998776 557766666677766643
No 268
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.87 E-value=0.00056 Score=70.37 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=56.5
Q ss_pred EEEEcCCC---CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC---------------------CCcHHHHHH
Q 013083 348 IIFTTNHK---EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH---------------------HHLFEQIEE 403 (450)
Q Consensus 348 iI~TTN~~---~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~---------------------~~l~~ei~~ 403 (450)
|||.|+.. ..|..|| |.|.-..|.++.++.+.-+..+...|.... .....+++.
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 44444433 3456666 447778899999999998888888886531 135667777
Q ss_pred HHhcCCCCHHHH--HHHHHHhccCcHHHHHHHHHHH
Q 013083 404 MLMKVNVTPAEV--AGELMKSKCKYAEISLQGIVKF 437 (450)
Q Consensus 404 l~~~~~~spa~i--~~~L~~~~~~~~~~al~~l~~~ 437 (450)
.++..|----|+ .-+-++. ..++..|++.++..
T Consensus 264 ~i~~LGGRltDLe~lvrRiks-Ge~p~~Av~~iI~q 298 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKS-GESPEEAVEEIISQ 298 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 777664333333 3333332 67899999887754
No 269
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.83 E-value=1.7e-05 Score=71.68 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=30.6
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.+..++|+||||||||++++++|..+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3568999999999999999999999999988654
No 270
>PF14516 AAA_35: AAA-like domain
Probab=97.83 E-value=0.00047 Score=69.78 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=80.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC-----ch-------------------------------
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS-----NS------------------------------- 282 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~-----~~------------------------------- 282 (450)
+.-+.++||..+||||+...+.+.+ ++..+.+++..+.+ .+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3567899999999999999988776 78888888877532 00
Q ss_pred -h----HHH-HHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC-----CC-eEEEE
Q 013083 283 -D----LRS-LLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS-----EG-RIIIF 350 (450)
Q Consensus 283 -~----L~~-l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~-----~~-~iiI~ 350 (450)
. +.+ ++....+|-||+|||||+++.. . .....|+..+........ .. +++++
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~-------------~---~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~ 174 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY-------------P---QIADDFFGLLRSWYEQRKNNPIWQKLRLILA 174 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC-------------c---chHHHHHHHHHHHHHhcccCcccceEEEEEe
Confidence 1 111 1222346789999999998641 1 122344444443222111 11 23333
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 351 TTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 351 TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
-+..+......=.+|--+...|+++.-+.++...|++.|-
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 2222222111123555666778999999999999998874
No 271
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.82 E-value=0.0002 Score=76.07 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=101.5
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCC--CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-----
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW--KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ----- 279 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~--~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~----- 279 (450)
|-.+.|.+.+|.-|+-.+ +.+-..+..-|.+. --++++.|.||||||-+.++.++.+...+|.---++-.
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 566778888888875543 22222233223333 23599999999999999999999998888865322210
Q ss_pred ---CchhHHHHHhcC-----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhh---------cccccC
Q 013083 280 ---SNSDLRSLLLSM-----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFID---------GLWSCC 342 (450)
Q Consensus 280 ---~~~~L~~l~~~~-----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld---------g~~~~~ 342 (450)
.++.-.....++ ...+|..|||+|.+-. ..++ .++.+|+ |+..+.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~---------------~dqv---AihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV---------------KDQV---AIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh---------------HhHH---HHHHHHHhheehheecceEEee
Confidence 011111111222 3578999999998721 1222 3444544 222222
Q ss_pred CCCeEEEEEcCCCC-------------CCCccccCCCcceeEE-EeCCCCHHHHHHHHHHHhCc
Q 013083 343 SEGRIIIFTTNHKE-------------KLDPALLRPGRMDMHI-HMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 343 ~~~~iiI~TTN~~~-------------~ld~aLlrpgR~d~~I-~~~~p~~~~r~~l~~~~l~~ 392 (450)
+...-|++++|+.. ++++++++ |||..+ -+..|++..=..|..+.+..
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 33345778888652 47899999 999764 56889998877788777754
No 272
>PRK07261 topology modulation protein; Provisional
Probab=97.82 E-value=4.5e-05 Score=69.73 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=27.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+++.|+||+||||+++.|+..++.+++.+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999998877665
No 273
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.81 E-value=0.00063 Score=68.03 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=90.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 199 MVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 199 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+.+.+...|+.+++.....+.++.....+.-. --.+|+.|..||||-.+|++..... ..||+.++|
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred cccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 44566778999999998888888776655432 2468999999999999999987765 679999999
Q ss_pred CccCCchhHHHHHhcCC------------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC
Q 013083 276 TDVQSNSDLRSLLLSMP------------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS 343 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~~~------------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~ 343 (450)
..+-.+..-.++|..++ +..-+++|||.-+. ...+.-+-.||+ ||.....|
T Consensus 264 A~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmS---------------p~lQaKLLRFL~--DGtFRRVG 326 (511)
T COG3283 264 ASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMS---------------PRLQAKLLRFLN--DGTFRRVG 326 (511)
T ss_pred CCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcC---------------HHHHHHHHHHhc--CCceeecC
Confidence 99965544455655443 45678899996553 223334444444 77665444
Q ss_pred CC------eEEEEEcCCC
Q 013083 344 EG------RIIIFTTNHK 355 (450)
Q Consensus 344 ~~------~iiI~TTN~~ 355 (450)
++ +-||+||..+
T Consensus 327 ee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 327 EDHEVHVDVRVICATQVN 344 (511)
T ss_pred CcceEEEEEEEEeccccc
Confidence 33 5678888654
No 274
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.80 E-value=3.8e-05 Score=66.24 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=42.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
..|.|++-+++.|++.+..++..+. ...+-.+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999997642 1112234599999999999999999985
No 275
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.80 E-value=2.7e-05 Score=73.95 Aligned_cols=62 Identities=24% Similarity=0.436 Sum_probs=38.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc----------------cCCchhHHHHHhc----CCCceEEEEEcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD----------------VQSNSDLRSLLLS----MPSRSMLVIEDI 302 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~----------------~~~~~~L~~l~~~----~~~~sIlviDdi 302 (450)
..+|+||+||+||||+|+.+++. .-++..+.+. -..-+.+...+.. .....+||||.|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 45999999999999999999742 2222222211 0111233333322 234679999999
Q ss_pred cccc
Q 013083 303 DCSI 306 (450)
Q Consensus 303 D~l~ 306 (450)
+.+.
T Consensus 91 ~~l~ 94 (220)
T TIGR01618 91 SALQ 94 (220)
T ss_pred HHHH
Confidence 9874
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.74 E-value=0.00014 Score=68.87 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=31.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
|++..+-++++||||||||+++..+|.+. +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 66777779999999999999999999775 5566666543
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00042 Score=71.39 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=44.3
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcC-------CcEEEEecCccC----------------------CchhHHHHHhcC
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLK-------FDIYDLDLTDVQ----------------------SNSDLRSLLLSM 291 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~-------~~~~~l~~~~~~----------------------~~~~L~~l~~~~ 291 (450)
.++.++|+||+|+||||.+.-+|..+. ..+..+.+.... ....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356799999999999999999998762 344444433321 124445555555
Q ss_pred CCceEEEEEccccc
Q 013083 292 PSRSMLVIEDIDCS 305 (450)
Q Consensus 292 ~~~sIlviDdiD~l 305 (450)
....+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 66788999998654
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=9.2e-05 Score=75.71 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=61.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc----C-CcEEEEecCcc----------------------CCchhHHHHHhcCCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL----K-FDIYDLDLTDV----------------------QSNSDLRSLLLSMPSR 294 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l----~-~~~~~l~~~~~----------------------~~~~~L~~l~~~~~~~ 294 (450)
+..++|.||+|+||||++..||..+ + ..+..+..... .+...+...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578999999999999999999864 3 24444443332 2234555666666778
Q ss_pred eEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeE-EEEEcCCCCCCCc
Q 013083 295 SMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRI-IIFTTNHKEKLDP 360 (450)
Q Consensus 295 sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~i-iI~TTN~~~~ld~ 360 (450)
.+|+||.....- ....+...+..+.+... ..+++ |+-+|+..+.++.
T Consensus 217 DlVLIDTaG~~~-----------------~d~~l~e~La~L~~~~~--~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 217 HMVLIDTIGMSQ-----------------RDRTVSDQIAMLHGADT--PVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred CEEEEcCCCCCc-----------------ccHHHHHHHHHHhccCC--CCeEEEEecCccChHHHHH
Confidence 899999885331 12245566666655322 22344 4455666665553
No 279
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.72 E-value=0.0002 Score=70.00 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecCcc
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLTDV 278 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~~~ 278 (450)
.-+.++|+-..++..--.++... -|+-..|.+|+.|+||||||.+|-.+|+.+|- ||..+..+++
T Consensus 38 ~s~GmVGQ~~AR~Aagvi~kmi~--------egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 38 VSEGMVGQVKARKAAGVILKMIR--------EGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred ccccchhhHHHHHHhHHHHHHHH--------cCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 34667777666655433332222 24445789999999999999999999999963 5555555444
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=2.6e-05 Score=71.02 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=29.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
-|++.||||+||||+++.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999888773
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00014 Score=65.01 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=22.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
--+.+.||||+||||++.-+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999888
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.68 E-value=0.00026 Score=67.82 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=30.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|.|.+..++++||||||||+++..++... +.+++.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67778889999999999999999997653 556655544
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=9.1e-05 Score=70.45 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
|++...-++++||||+|||+++..+|... +.+++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66777789999999999999999999755 6777777776
No 284
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.67 E-value=0.00023 Score=71.40 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCce
Q 013083 216 LKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRS 295 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~s 295 (450)
..+.|.+.|+....+ +|.+|.+|+-||-.|||||+|+|+-+.++-....+++.. +.|.--+.-+-..-
T Consensus 137 ~~~~i~~iL~~lv~N--------~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQf 204 (417)
T PF06431_consen 137 FDDVILEILKCLVEN--------IPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQF 204 (417)
T ss_dssp HHHHHHHHHHHHHHT--------BTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-S
T ss_pred hHHHHHHHHHHHhcC--------CCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceE
Confidence 345566666666554 456899999999999999999999999998888888754 44555565666778
Q ss_pred EEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC-----CCe-----EEEEEcCCCCCCCccccCC
Q 013083 296 MLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS-----EGR-----IIIFTTNHKEKLDPALLRP 365 (450)
Q Consensus 296 IlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~-----~~~-----iiI~TTN~~~~ld~aLlrp 365 (450)
.+|+||+-.-. .....-.++..-..|..|-..+||...-+- ..+ --|.|+|. -.||..+.-
T Consensus 205 mVvFEDVKGq~-------~~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v- 275 (417)
T PF06431_consen 205 MVVFEDVKGQP-------SDNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV- 275 (417)
T ss_dssp EEEEEEE--SS-------TTTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT-
T ss_pred EEEEEecCCCc-------CCCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee-
Confidence 89999984321 111111233444556677777887543210 011 24678886 457888888
Q ss_pred CcceeEEEeCC
Q 013083 366 GRMDMHIHMSY 376 (450)
Q Consensus 366 gR~d~~I~~~~ 376 (450)
||...+.|..
T Consensus 276 -Rf~~~~~F~~ 285 (417)
T PF06431_consen 276 -RFCKVLDFRP 285 (417)
T ss_dssp -TEEEEEE---
T ss_pred -eeEeeEeccc
Confidence 9999888864
No 285
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.65 E-value=0.00032 Score=69.64 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=99.7
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHH---HHcCCcEEEEecCccC-C---
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMA---NHLKFDIYDLDLTDVQ-S--- 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA---~~l~~~~~~l~~~~~~-~--- 280 (450)
-++.|..+..+.+-+.++.-.-..+ ...+++.||.|+|||.++...- ++.|-+++.+.+...- +
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3467777888888888877665444 5789999999999999765443 3567788777655431 1
Q ss_pred -----------------------chhHHHHHhcC------C-CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 281 -----------------------NSDLRSLLLSM------P-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 281 -----------------------~~~L~~l~~~~------~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.+.+..++... + .+.|.++||||...+ ...+..
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~--------------h~rQtl--- 157 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP--------------HSRQTL--- 157 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc--------------chhhHH---
Confidence 12222222211 1 245666789998754 112222
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCC---CCCCccccCCCcceeE-EEeCC-CCHHHHHHHHHHHhCcc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRMDMH-IHMSY-CTASVFEQLAFNYLGIS 393 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d~~-I~~~~-p~~~~r~~l~~~~l~~~ 393 (450)
|-|.+|-..+. ...+.||+.|.+. +.|...+.+ ||... |.|+. ....+...+.+..+...
T Consensus 158 lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 158 LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 44555554433 3456677766555 455677777 88766 67654 46788999999988554
No 286
>PRK13947 shikimate kinase; Provisional
Probab=97.63 E-value=4.8e-05 Score=68.99 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=29.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988763
No 287
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00011 Score=79.89 Aligned_cols=161 Identities=20% Similarity=0.180 Sum_probs=88.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhC-CCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe-cCccC--C---
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVG-KAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD-LTDVQ--S--- 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~-~~~~~--~--- 280 (450)
-++.|.+++|+.|.-.+ |-..+....+-+ +.---++||.|.||||||.|.+.+++.+...+|.-- .++.. +
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 34567777777765443 222111111100 011235999999999999999999999977776432 11110 0
Q ss_pred --chhHHHHHhcC-----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-c--------cCCC
Q 013083 281 --NSDLRSLLLSM-----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-S--------CCSE 344 (450)
Q Consensus 281 --~~~L~~l~~~~-----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~--------~~~~ 344 (450)
+...-+....+ ..++|++|||+|.+-. ..-..+...|+... + ..+.
T Consensus 364 ~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------------------~dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 364 VRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------------------EDRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred EEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh------------------HHHHHHHHHHHhcEeeecccceeeecch
Confidence 10001111122 3688999999997621 12234444444211 1 1111
Q ss_pred CeEEEEEcCCCC-------------CCCccccCCCcceeEEEeC-CCCHHHHHHHHHHHh
Q 013083 345 GRIIIFTTNHKE-------------KLDPALLRPGRMDMHIHMS-YCTASVFEQLAFNYL 390 (450)
Q Consensus 345 ~~iiI~TTN~~~-------------~ld~aLlrpgR~d~~I~~~-~p~~~~r~~l~~~~l 390 (450)
..-|++++|.+. +|+++|++ |||..+-+. .|+.+.=+.++.+.+
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 223666777653 47889999 999977664 466654444444443
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.62 E-value=0.0011 Score=69.42 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 215 ELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
...+.+.+.+...+.......... ..+..++++||||+||||++..+|..+ +..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 345566666655554322111111 235679999999999999999999887 566666666544
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.62 E-value=0.00034 Score=64.04 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=24.0
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+|++||||||||+++..++.+. |.++..+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998887754 555555543
No 290
>PRK03839 putative kinase; Provisional
Probab=97.61 E-value=4.9e-05 Score=69.75 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=27.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987765
No 291
>PRK00625 shikimate kinase; Provisional
Probab=97.60 E-value=5.4e-05 Score=69.42 Aligned_cols=31 Identities=35% Similarity=0.571 Sum_probs=29.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.++|.|+||+||||+++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998886
No 292
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.60 E-value=5.4e-05 Score=67.11 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=28.5
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999999988765
No 293
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.59 E-value=4.7e-05 Score=69.25 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=30.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999999887
No 294
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.58 E-value=4.4e-05 Score=69.57 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=35.9
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc---EEEEecCcc
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD---IYDLDLTDV 278 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~---~~~l~~~~~ 278 (450)
++|-++..+++...+. ..... .++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~---------~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSG---------SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHcC---------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3555666666655553 22221 14789999999999999999998887544 777777766
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.58 E-value=3.6e-05 Score=67.37 Aligned_cols=28 Identities=39% Similarity=0.695 Sum_probs=24.3
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
+++.||||+||||+|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999944443
No 296
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.58 E-value=0.00019 Score=71.71 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=59.7
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHcCCcE-EEEecCccC--CchhHHHHH----------hc-CCCceEEEEEccccc
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHLKFDI-YDLDLTDVQ--SNSDLRSLL----------LS-MPSRSMLVIEDIDCS 305 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l~~~~-~~l~~~~~~--~~~~L~~l~----------~~-~~~~sIlviDdiD~l 305 (450)
..++|+.||||-|.|||.|.......+...- ..+....+. .-..+..+- .+ +.+--||+|||+.-.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4568999999999999999999888764322 111111110 011122211 11 123469999999743
Q ss_pred ccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 306 ITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
+..+..+++.|++.|=. .++++|+|+|.+
T Consensus 143 ---------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~ 171 (367)
T COG1485 143 ---------------DIADAMILGRLLEALFA------RGVVLVATSNTA 171 (367)
T ss_pred ---------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCC
Confidence 34456788888887642 578999999964
No 297
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.56 E-value=0.00037 Score=79.74 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=90.0
Q ss_pred CCCceeeeeCCCCCchHH-HHHHHHHHcCCcEEEEecCccCCch-hHHHHHhcC------------C----CceEEEEEc
Q 013083 240 AWKRGYLLYGPPGTGKSS-LIAAMANHLKFDIYDLDLTDVQSNS-DLRSLLLSM------------P----SRSMLVIED 301 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTs-la~alA~~l~~~~~~l~~~~~~~~~-~L~~l~~~~------------~----~~sIlviDd 301 (450)
...|+|+++||||+|||. +.-++-+++-+.++.++.+.-.... .+..+=..+ + +.-||+.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346999999999999999 5788889999999999988775444 443332222 1 235899999
Q ss_pred ccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC------CCCeEEEEEcCCCCCC-----CccccCCCccee
Q 013083 302 IDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC------SEGRIIIFTTNHKEKL-----DPALLRPGRMDM 370 (450)
Q Consensus 302 iD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~------~~~~iiI~TTN~~~~l-----d~aLlrpgR~d~ 370 (450)
|. +....+- ....-..+-.-|-+-+|+|+.. -.+.+++++||.+... ...++| -.+
T Consensus 1572 In-Lp~~~~y---------~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r---~~v 1638 (3164)
T COG5245 1572 IN-LPYGFEY---------YPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR---KPV 1638 (3164)
T ss_pred cC-Ccccccc---------CCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc---Cce
Confidence 98 3221100 0111112222223346777642 1457888999987542 345554 345
Q ss_pred EEEeCCCCHHHHHHHHHHHhC
Q 013083 371 HIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.|.+.||.-.....|...++.
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHH
Confidence 688999999999988887774
No 298
>PRK13949 shikimate kinase; Provisional
Probab=97.56 E-value=6.4e-05 Score=68.61 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=29.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.++|.||||+|||++++.+|+.+++++++.|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999998876
No 299
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00084 Score=69.66 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe-cCccCCchhHHH---HHhcCC--CceEEEEEcccccccccccCccccc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD-LTDVQSNSDLRS---LLLSMP--SRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~-~~~~~~~~~L~~---l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
.++++||.+|||||+++.+...+.-.++.++ +........+.. .+.... ++..|+||||+++-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----------
Confidence 7899999999999999988888855433333 333333333322 222222 558999999997621
Q ss_pred CCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCC-CccccCCCcceeEEEeCCCCHHHHHH
Q 013083 318 GHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKL-DPALLRPGRMDMHIHMSYCTASVFEQ 384 (450)
Q Consensus 318 ~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~l-d~aLlrpgR~d~~I~~~~p~~~~r~~ 384 (450)
....+..+.+ . +...++|.+++..-.+ ..+-.=|||. ..+++.+.++.++..
T Consensus 109 ------W~~~lk~l~d---~-----~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------WERALKYLYD---R-----GNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------HHHHHHHHHc---c-----ccceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2233333332 1 1114555555544222 1222235794 669999999999854
No 300
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.00023 Score=67.47 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---C------CcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---K------FDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~------~~~~~l~~~~ 277 (450)
|.+...-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 67777789999999999999999998764 2 5556666543
No 301
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.52 E-value=0.0004 Score=65.09 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=41.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-----CCcEE-----------EEecCc---cC--------CchhHHHHHhcCC--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-----KFDIY-----------DLDLTD---VQ--------SNSDLRSLLLSMP-- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-----~~~~~-----------~l~~~~---~~--------~~~~L~~l~~~~~-- 292 (450)
.+.++|.||+|+||||++++++... |.++- ....+. +. .-..+.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 4678999999999999999999533 44321 000000 00 1144566777777
Q ss_pred CceEEEEEcccc
Q 013083 293 SRSMLVIEDIDC 304 (450)
Q Consensus 293 ~~sIlviDdiD~ 304 (450)
+|.++++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999843
No 302
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.51 E-value=0.00074 Score=64.78 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
|.+....+++.||||||||+++..++..+ +..+..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 46667789999999999999975554433 45555554
No 303
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.50 E-value=0.0004 Score=64.95 Aligned_cols=63 Identities=29% Similarity=0.535 Sum_probs=40.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC----------chhHHHHHhcC-----------CCceEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS----------NSDLRSLLLSM-----------PSRSMLV 298 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~----------~~~L~~l~~~~-----------~~~sIlv 298 (450)
+..++.||||||||++++.++..+ +..++.+..+.-.. ...+..++... .+..+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 568899999999999999988766 56777766554311 12233333222 2357999
Q ss_pred EEccccc
Q 013083 299 IEDIDCS 305 (450)
Q Consensus 299 iDdiD~l 305 (450)
|||+..+
T Consensus 99 VDEasmv 105 (196)
T PF13604_consen 99 VDEASMV 105 (196)
T ss_dssp ESSGGG-
T ss_pred Eeccccc
Confidence 9999655
No 304
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.50 E-value=0.00016 Score=72.45 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=44.6
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 212 LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 212 ~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.+++.++.+.+.++..+.... -.+.+..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455666777777766554322 2344678999999999999999999999999999665
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.49 E-value=0.00053 Score=67.82 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=42.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc----C-CcEEEEecCcc----------------------CCchhHHHHHhcCCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL----K-FDIYDLDLTDV----------------------QSNSDLRSLLLSMPSR 294 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l----~-~~~~~l~~~~~----------------------~~~~~L~~l~~~~~~~ 294 (450)
++.++|.||+|+||||++..+|.++ + ..+..+++... .+...+.+.+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 4568899999999999999999876 3 56666665542 1233455555555556
Q ss_pred eEEEEEcc
Q 013083 295 SMLVIEDI 302 (450)
Q Consensus 295 sIlviDdi 302 (450)
.+|+||..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 77777753
No 306
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00043 Score=65.59 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=57.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHH-----HcCCcE---------EEEecCccCC--------------chhHHHHHhcCCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN-----HLKFDI---------YDLDLTDVQS--------------NSDLRSLLLSMPSR 294 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~-----~l~~~~---------~~l~~~~~~~--------------~~~L~~l~~~~~~~ 294 (450)
+.++|.||.|+|||++.+.++. ..|..+ ++-....+.. -..+..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 233322 1111111111 12333344556789
Q ss_pred eEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCcc
Q 013083 295 SMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPA 361 (450)
Q Consensus 295 sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~a 361 (450)
++++|||+..-.+ ..+....+..++..+-. ....+..+|++|...+.+...
T Consensus 110 slvllDE~~~gtd-------------~~~~~~~~~ail~~l~~---~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 110 SLVLIDEFGKGTD-------------TEDGAGLLIATIEHLLK---RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cEEEeccccCCCC-------------HHHHHHHHHHHHHHHHh---cCCCCcEEEEEcChHHHHHhh
Confidence 9999999964321 11122333445544421 101234778888877654443
No 307
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0018 Score=62.05 Aligned_cols=125 Identities=11% Similarity=0.072 Sum_probs=92.7
Q ss_pred CceeeeeCCCC-CchHHHHHHHHHHcC---------CcEEEEecCc-------cCCchhHHHHHhcCC------CceEEE
Q 013083 242 KRGYLLYGPPG-TGKSSLIAAMANHLK---------FDIYDLDLTD-------VQSNSDLRSLLLSMP------SRSMLV 298 (450)
Q Consensus 242 ~rgiLL~GppG-TGKTsla~alA~~l~---------~~~~~l~~~~-------~~~~~~L~~l~~~~~------~~sIlv 298 (450)
...||+.|..+ +||..++.-++..+. -+++.+.... .-+-+.+|++..... +.-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35799999998 999999888877662 3455554321 113455666554432 456999
Q ss_pred EEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCC
Q 013083 299 IEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCT 378 (450)
Q Consensus 299 iDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~ 378 (450)
|+++|.+- ....+.||..++.- +.+.++|++|..++.+.|.+++ |+.. +.++.|.
T Consensus 95 I~~ae~mt------------------~~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrS--RCq~-i~~~~p~ 149 (263)
T PRK06581 95 IYSAELMN------------------LNAANSCLKILEDA----PKNSYIFLITSRAASIISTIRS--RCFK-INVRSSI 149 (263)
T ss_pred EechHHhC------------------HHHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhh--ceEE-EeCCCCC
Confidence 99999873 34678899988863 5678899999999999999999 8855 8999999
Q ss_pred HHHHHHHHHHHhC
Q 013083 379 ASVFEQLAFNYLG 391 (450)
Q Consensus 379 ~~~r~~l~~~~l~ 391 (450)
...-.+++..++.
T Consensus 150 ~~~~~e~~~~~~~ 162 (263)
T PRK06581 150 LHAYNELYSQFIQ 162 (263)
T ss_pred HHHHHHHHHHhcc
Confidence 8777777766654
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.00044 Score=69.37 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHH---Hhc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSL---LLS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l---~~~ 290 (450)
|.|..+.++++||||||||+|+..++... +.++..++..... +.++.... +..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777889999999999999987766554 4555555443210 11111111 122
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
.....+||||-+.++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 24678999999988864
No 309
>PRK13948 shikimate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=67.47 Aligned_cols=34 Identities=29% Similarity=0.212 Sum_probs=31.5
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.++.++|.|++|+||||+++.+|+.+++++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3578999999999999999999999999999877
No 310
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.46 E-value=0.00031 Score=67.09 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=30.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++...-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56667778999999999999999998553 24666666544
No 311
>PRK05973 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.00091 Score=64.35 Aligned_cols=37 Identities=22% Similarity=-0.003 Sum_probs=28.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
|.+....+|+.|+||+|||+++..+|... |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56667789999999999999988777654 65555443
No 312
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00035 Score=64.80 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=26.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
++-++|.||+|+|||+|++.+.....--++.+.++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~T 38 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCT 38 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCcc
Confidence 56789999999999999999988763223344443
No 313
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.43 E-value=0.0061 Score=69.53 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=83.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc--------------------------------h----hHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN--------------------------------S----DLR 285 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~--------------------------------~----~L~ 285 (450)
.+-++++||+|.|||+++...+...+ ++.-+.+..-.++ . .+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35789999999999999999887776 6555544321000 0 011
Q ss_pred HHHh---cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCC-cc
Q 013083 286 SLLL---SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLD-PA 361 (450)
Q Consensus 286 ~l~~---~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld-~a 361 (450)
.++. ....|.+|||||++.+-. ......+..|+. .. +.+..+|+|+.....++ ..
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~--------------~~~~~~l~~l~~---~~----~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN--------------PEIHEAMRFFLR---HQ----PENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC--------------hHHHHHHHHHHH---hC----CCCeEEEEEeCCCCCCchHh
Confidence 2222 225689999999997621 111122333333 22 34455555664422222 11
Q ss_pred ccCCCcceeEEEeC----CCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHH
Q 013083 362 LLRPGRMDMHIHMS----YCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 362 LlrpgR~d~~I~~~----~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L 419 (450)
+...|. .+++. ..+.++-.+++...++.. .-.++++.+.+.++--|.-+...+
T Consensus 170 l~~~~~---~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 170 LRVRDQ---LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred HHhcCc---ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHH
Confidence 211122 24444 668888888887766542 234566777776666666665444
No 314
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.43 E-value=0.00012 Score=67.02 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=25.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+++.||||+||||+++.||..+++..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765554
No 315
>PTZ00202 tuzin; Provisional
Probab=97.42 E-value=0.0066 Score=63.00 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchh
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSD 283 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~ 283 (450)
|....+++|-++....+...+.. .....++-+.|.||+|||||++++.++..++...+.+|... ..+-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHHH
Confidence 44566778887777777655532 11222356789999999999999999999998888888773 3444
Q ss_pred HHHHHhc
Q 013083 284 LRSLLLS 290 (450)
Q Consensus 284 L~~l~~~ 290 (450)
++.++..
T Consensus 326 Lr~LL~A 332 (550)
T PTZ00202 326 LRSVVKA 332 (550)
T ss_pred HHHHHHH
Confidence 4444433
No 316
>PRK06217 hypothetical protein; Validated
Probab=97.41 E-value=0.00013 Score=67.20 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=28.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-|+|.|+||+||||++++||..++.+++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999887765
No 317
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.41 E-value=0.00013 Score=64.68 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
++|.|+||+||||+++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.41 E-value=0.00029 Score=68.93 Aligned_cols=90 Identities=22% Similarity=0.446 Sum_probs=58.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEec-Ccc
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDL-TDV 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~-~~~ 278 (450)
.+.+++++.......+.+.+.+...+.. +.++++.||+|+||||++.++..++. ..++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4457889888877777777666554432 46899999999999999999999883 34554431 111
Q ss_pred -------------CCchhHHHHHhcC--CCceEEEEEccc
Q 013083 279 -------------QSNSDLRSLLLSM--PSRSMLVIEDID 303 (450)
Q Consensus 279 -------------~~~~~L~~l~~~~--~~~sIlviDdiD 303 (450)
.....+.+++..+ ..|.+|++.||.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1223455555443 368999999995
No 319
>PRK14531 adenylate kinase; Provisional
Probab=97.41 E-value=0.00015 Score=66.85 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+-+++.||||+||||+++.+|..+|++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4699999999999999999999999877654
No 320
>PRK14532 adenylate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=67.09 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=26.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.++|.||||+||||+++.||+.+++..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 488999999999999999999999877654
No 321
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00013 Score=64.28 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=28.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..+||+.|-|||||||++..+|..++++.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 35899999999999999999999999987655
No 322
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.00062 Score=68.42 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=46.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc---------------------CCchhHHHHH---hc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV---------------------QSNSDLRSLL---LS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~---------------------~~~~~L~~l~---~~ 290 (450)
|+|..+-+++|||||||||+|+..+|... +..++.++...- .+.+++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57777789999999999999998877544 556666654321 0111121221 22
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 24678999999988864
No 323
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.38 E-value=0.00014 Score=65.38 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=24.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
|+|.||||+||||+++.+++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866643
No 324
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.37 E-value=0.00015 Score=63.56 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=28.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998887
No 325
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.37 E-value=0.00035 Score=65.45 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCccccc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
|......++|.|+.|+|||++++.|+.+. +.-........+.+ ..+...-|+.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~~----~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDFL----EQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHHH----HHHHHhHheeHHHHhhcch----------
Confidence 44444567899999999999999997662 21112222222222 2334457888999987621
Q ss_pred CCCCCCchhhHHhHHHHhhccc--------ccCCCCeEEEEEcCCCCCC-CccccCCCcceeEEEeCC
Q 013083 318 GHNQGDNKVTLSGLLNFIDGLW--------SCCSEGRIIIFTTNHKEKL-DPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 318 ~~~~~~~~~~l~~LL~~ldg~~--------~~~~~~~iiI~TTN~~~~l-d~aLlrpgR~d~~I~~~~ 376 (450)
.....+..++..-.-.. ...+...++|+|||..+-| |+.=-| || ..|+++.
T Consensus 110 -----~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 -----KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred -----hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 12233444443221110 1112335789999998755 444556 77 3366554
No 326
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.36 E-value=0.0043 Score=60.86 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=56.1
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC----chh
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS----NSD 283 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~----~~~ 283 (450)
-+|++-++..+.|.+.. +-+..+ +...||.|.+|+||.++++..|--.++.++.+..+.--+ .++
T Consensus 8 m~lVlf~~ai~hi~ri~-RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~d 76 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARIS-RVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKED 76 (268)
T ss_dssp ------HHHHHHHHHHH-HHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHH
T ss_pred cceeeHHHHHHHHHHHH-HHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHH
Confidence 35667777777766644 344332 256899999999999999999988999999998776432 345
Q ss_pred HHHHHhcC---CCceEEEEEcccc
Q 013083 284 LRSLLLSM---PSRSMLVIEDIDC 304 (450)
Q Consensus 284 L~~l~~~~---~~~sIlviDdiD~ 304 (450)
|+.++..+ .++.+++|+|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 66666554 2678888888653
No 327
>PRK13946 shikimate kinase; Provisional
Probab=97.35 E-value=0.00016 Score=66.78 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
++.|+|.|+||||||++++.+|+.+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4689999999999999999999999999988773
No 328
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.34 E-value=0.0002 Score=65.52 Aligned_cols=34 Identities=41% Similarity=0.718 Sum_probs=30.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
+..++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999999887764
No 329
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.33 E-value=0.00018 Score=66.35 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=26.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
++|.||||+|||++++.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998877654
No 330
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.33 E-value=0.00038 Score=63.66 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=45.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCch-----------------------hHHHHHhc-CCCceEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNS-----------------------DLRSLLLS-MPSRSMLVI 299 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~-----------------------~L~~l~~~-~~~~sIlvi 299 (450)
-+|+.||||+|||++|..++..++.+++.+.......++ +|..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999988777777655443221 34444544 345668888
Q ss_pred Ecccccc
Q 013083 300 EDIDCSI 306 (450)
Q Consensus 300 DdiD~l~ 306 (450)
|.+..+.
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8887764
No 331
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.31 E-value=0.0002 Score=67.28 Aligned_cols=22 Identities=45% Similarity=0.886 Sum_probs=18.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l 266 (450)
.+++||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777777766
No 332
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.30 E-value=0.001 Score=60.75 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=44.5
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC-----------------------chhHHHHHhcCCCceEEEEEc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-----------------------NSDLRSLLLSMPSRSMLVIED 301 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-----------------------~~~L~~l~~~~~~~sIlviDd 301 (450)
+|+.||||+|||++|..++...+.+++.+......+ ..+|.+.+...+++.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 689999999999999999988777777775444311 123444454444566899988
Q ss_pred cccccc
Q 013083 302 IDCSIT 307 (450)
Q Consensus 302 iD~l~~ 307 (450)
+..+..
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 877653
No 333
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.29 E-value=0.00089 Score=70.46 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC--------------------CchhHHHHHhcC--C
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ--------------------SNSDLRSLLLSM--P 292 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~L~~l~~~~--~ 292 (450)
|++....+||+||||+|||+|+..+|... +.+++.++..+-. .+..+.+++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56667789999999999999999998866 5677666644321 011222332222 3
Q ss_pred CceEEEEEccccccc
Q 013083 293 SRSMLVIEDIDCSIT 307 (450)
Q Consensus 293 ~~sIlviDdiD~l~~ 307 (450)
++.+||||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 678999999987753
No 334
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0041 Score=65.07 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=42.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCccC----------------------CchhHHHHHhcCCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDVQ----------------------SNSDLRSLLLSMPSR 294 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~~----------------------~~~~L~~l~~~~~~~ 294 (450)
++.++|.||+|+||||++..||..+ +..+..+++.... +..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4578899999999999999988754 3466666665421 123444445555566
Q ss_pred eEEEEEccc
Q 013083 295 SMLVIEDID 303 (450)
Q Consensus 295 sIlviDdiD 303 (450)
.+|+||...
T Consensus 301 DlVlIDt~G 309 (424)
T PRK05703 301 DVILIDTAG 309 (424)
T ss_pred CEEEEeCCC
Confidence 788888764
No 335
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.28 E-value=0.00025 Score=64.31 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=29.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..++|.|+||+|||++++.+|..+++++++.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999998775
No 336
>PRK14530 adenylate kinase; Provisional
Probab=97.26 E-value=0.00027 Score=66.82 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.||||+||||+++.||..++++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3589999999999999999999999887754
No 337
>PRK04296 thymidine kinase; Provisional
Probab=97.25 E-value=0.002 Score=59.84 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l 273 (450)
.-.+++||||+|||+++..++..+ +..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 357899999999999998888766 5565555
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0035 Score=64.37 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 214 SELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 214 ~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
.+.++.+.+.+...+..+..+. ..++.++|.||+|+||||++..||..+ +..+..+++..
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~----~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFE----KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred HHHHHHHHHHHHHHhccccccc----cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4556666666666555432211 124678999999999999999999877 34455555433
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.24 E-value=0.002 Score=66.12 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC--------------------CchhHHHHHhc--CC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ--------------------SNSDLRSLLLS--MP 292 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~L~~l~~~--~~ 292 (450)
|++...-+||+||||+|||+|+..+|..+ +.+++.++..+-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56667779999999999999999998765 3466666543210 11122222222 23
Q ss_pred CceEEEEEcccccc
Q 013083 293 SRSMLVIEDIDCSI 306 (450)
Q Consensus 293 ~~sIlviDdiD~l~ 306 (450)
++.+||||+|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999998874
No 340
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.23 E-value=0.00095 Score=65.15 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=53.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHH------HcCCcEEEEecCccCCchhHHHHHhcC-----------------CCceEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN------HLKFDIYDLDLTDVQSNSDLRSLLLSM-----------------PSRSMLV 298 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~------~l~~~~~~l~~~~~~~~~~L~~l~~~~-----------------~~~sIlv 298 (450)
+..+||.||.|.|||.|++-|.. .+.-+|++++|..+..+..+..+|... ....+++
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 45799999999999999998865 346789999999998888888887553 2467999
Q ss_pred EEcccccc
Q 013083 299 IEDIDCSI 306 (450)
Q Consensus 299 iDdiD~l~ 306 (450)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998764
No 341
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.00036 Score=62.98 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=27.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.-++|.|+||+||||+++.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 356889999999999999999999965565554
No 342
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.22 E-value=0.002 Score=56.47 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
+..++|.|+.|+|||++++++++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999999753
No 343
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00028 Score=63.17 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=26.0
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
+-+.|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999876
No 344
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.21 E-value=0.00073 Score=68.05 Aligned_cols=65 Identities=29% Similarity=0.399 Sum_probs=50.4
Q ss_pred Cc-ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecCcc
Q 013083 207 FN-TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLTDV 278 (450)
Q Consensus 207 f~-~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~~~ 278 (450)
|+ .+.|.++...++++.++....+- -.-++-++|.||+|+|||++++.+.+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~-------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGL-------EERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhcc-------CccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 89999999999988777555431 1225778999999999999999999988 567887754444
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.21 E-value=0.00026 Score=64.71 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
+-++|.||||+||||++++++..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 578999999999999999999998877665443
No 346
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.19 E-value=0.0012 Score=61.88 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=40.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH-----cCCcE--------------EEEecCcc---------CCchhHHHHHhcCCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH-----LKFDI--------------YDLDLTDV---------QSNSDLRSLLLSMPSR 294 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~-----l~~~~--------------~~l~~~~~---------~~~~~L~~l~~~~~~~ 294 (450)
+-++|.||.|+|||++.++++.- .|..+ ..+...+. .....+..++.....+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 56899999999999999999932 22211 11111111 0123345555556789
Q ss_pred eEEEEEccccc
Q 013083 295 SMLVIEDIDCS 305 (450)
Q Consensus 295 sIlviDdiD~l 305 (450)
.++++||.-.-
T Consensus 110 ~llllDEp~~g 120 (202)
T cd03243 110 SLVLIDELGRG 120 (202)
T ss_pred eEEEEecCCCC
Confidence 99999999643
No 347
>PLN02199 shikimate kinase
Probab=97.17 E-value=0.00074 Score=66.68 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.++|+|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999999876
No 348
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.17 E-value=0.0015 Score=62.03 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=30.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~ 277 (450)
|+|.+..+|+.||||||||+|+..++... |.+++.+....
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 67778889999999999999988766433 77777776544
No 349
>PRK06547 hypothetical protein; Provisional
Probab=97.17 E-value=0.00055 Score=62.68 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=28.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..-|++.|++|+|||++++.+++.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 457889999999999999999999988877654
No 350
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.0021 Score=58.47 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC-CcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK-FDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~-~~~~~l~~ 275 (450)
.-+.+.|+||+||||++..||..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3567889999999999999999985 44444443
No 351
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.16 E-value=0.00069 Score=73.99 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=41.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.+|..|+.++|.++.++.+...+. . ++.++|+||||||||++++++|..+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~----~-----------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAK----Q-----------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHH----h-----------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 457889999999888887655443 1 24799999999999999999999885
No 352
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.16 E-value=0.003 Score=61.37 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
+.-++|.||+|+|||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 356899999999999999999998854
No 353
>PRK14528 adenylate kinase; Provisional
Probab=97.14 E-value=0.0004 Score=64.30 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=26.9
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.+++.||||+||||+++.+|..++++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887654
No 354
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.00041 Score=63.60 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.-+++.||||+||||+++.+|..+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3578999999999999999999998765543
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0014 Score=58.73 Aligned_cols=26 Identities=46% Similarity=0.635 Sum_probs=23.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
...+.|.||+|+|||+|+++|+..+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788999999999999999999774
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.12 E-value=0.0012 Score=64.47 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=31.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
|++....++++||||||||+++..+|... +.++..++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777889999999999999999876643 5677777764
No 357
>PRK02496 adk adenylate kinase; Provisional
Probab=97.12 E-value=0.00039 Score=63.95 Aligned_cols=29 Identities=31% Similarity=0.651 Sum_probs=26.4
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+++.||||+||||+++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999877654
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=97.12 E-value=0.00074 Score=53.25 Aligned_cols=33 Identities=39% Similarity=0.592 Sum_probs=21.8
Q ss_pred eeeeeCCCCCchH-HHHHHHHHHc------CCcEEEEecC
Q 013083 244 GYLLYGPPGTGKS-SLIAAMANHL------KFDIYDLDLT 276 (450)
Q Consensus 244 giLL~GppGTGKT-sla~alA~~l------~~~~~~l~~~ 276 (450)
-+++.|||||||| ++++.++... +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4556999999999 5555555555 4455555443
No 359
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.11 E-value=0.0014 Score=65.68 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=23.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~ 264 (450)
|++...-++++||||||||+|+..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 577777889999999999999988774
No 360
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.11 E-value=0.0032 Score=70.53 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999876
No 361
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0023 Score=65.58 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=21.0
Q ss_pred eeeeCCCCCchHHHHHHHHHHcC
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~ 267 (450)
.||.||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78889999999999999999774
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.09 E-value=0.00045 Score=66.21 Aligned_cols=31 Identities=19% Similarity=0.542 Sum_probs=27.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-++|.||||+||||+++.+|+.++++.+.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3899999999999999999999998776654
No 363
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.07 E-value=0.00058 Score=70.07 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=63.7
Q ss_pred CcceEEEEEEcCcchhHHHHHhhHHHHHHHHHHHHcCceeEEE---------------ec---CCCcccccccccCCCC-
Q 013083 145 SEVRHYELSFHRKQKDVVLNLYLPHVLEKAKAIKEENHMVKLH---------------TV---EYGCWDANDMVLKHPM- 205 (450)
Q Consensus 145 ~~~~~~~l~~~~~~~~~vl~~yl~~vl~~~~~~~~~~r~~~l~---------------~~---~~~~w~~~~~~~~~p~- 205 (450)
.+++...|+=..-. +.-++.+-.++++.++... ...+.+- -. -+..|. ++.-+|.
T Consensus 169 G~~k~v~l~d~pl~-~~ele~ia~eIi~~a~~~~--~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~E---ITavRPvv 242 (604)
T COG1855 169 GEWKLVRLSDKPLT-REELEEIAREIIERAKRDP--DSFIEIDRPGATVVQLRNYRIVIARPPFSDRWE---ITAVRPVV 242 (604)
T ss_pred CcEEEEEcCCccCC-HHHHHHHHHHHHHHHhhCc--CceEEEccCCceEEEeccEEEEEecCCCCCceE---EEEEeeeE
Confidence 34556666543333 3467888888888876432 1111111 10 112344 2233443
Q ss_pred --CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 206 --NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 206 --~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
++++-.+++.+++++.+. .+|+|+.||||.||||+|+|+|.++..
T Consensus 243 k~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred EechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 678888888888877553 269999999999999999999999843
No 364
>PRK09354 recA recombinase A; Provisional
Probab=97.07 E-value=0.002 Score=65.31 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=44.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHH---Hhc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSL---LLS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l---~~~ 290 (450)
|.|..+-++++||||||||+|+..++... +..++.++...-. +.++...+ +..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56767789999999999999998766543 5555555543310 11111111 222
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
.....+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24678999999988764
No 365
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0021 Score=61.36 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=57.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHH-Hc----CCc---------EE-----EEecC-ccC--------CchhHHHHHhcCCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN-HL----KFD---------IY-----DLDLT-DVQ--------SNSDLRSLLLSMPS 293 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~-~l----~~~---------~~-----~l~~~-~~~--------~~~~L~~l~~~~~~ 293 (450)
.+.++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-.++..++..+.+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999998 22 211 11 11111 110 12446667888889
Q ss_pred ceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCC
Q 013083 294 RSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEK 357 (450)
Q Consensus 294 ~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ 357 (450)
+++++|||+..-.. ..+.......+++.+... .+..+|++|...+-
T Consensus 111 ~sLvllDE~~~gT~-------------~~d~~~i~~~il~~l~~~-----~~~~~i~~TH~~~l 156 (222)
T cd03287 111 RSLVILDELGRGTS-------------THDGIAIAYATLHYLLEE-----KKCLVLFVTHYPSL 156 (222)
T ss_pred CeEEEEccCCCCCC-------------hhhHHHHHHHHHHHHHhc-----cCCeEEEEcccHHH
Confidence 99999999853211 111222234455544321 24567778877654
No 366
>PLN02200 adenylate kinase family protein
Probab=97.07 E-value=0.00061 Score=65.52 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
+.-+++.|||||||||+++.+|..+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 356889999999999999999999987643
No 367
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.06 E-value=0.00047 Score=64.96 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=26.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+++.||||+||||+++.||..+++..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877654
No 368
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0004 Score=62.90 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=26.9
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-+++.|.|||||||++..++ .+|++++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999887765
No 369
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.016 Score=55.75 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=76.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC---cEEEEecCc---------------cCCchh-----------HHHHHhcC-
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF---DIYDLDLTD---------------VQSNSD-----------LRSLLLSM- 291 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~---~~~~l~~~~---------------~~~~~~-----------L~~l~~~~- 291 (450)
+-.+++.|++|||||+++..+-..+.. +++.+.... +...+. +.+.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 457899999999999999999887743 222221100 001111 11122211
Q ss_pred ----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCc
Q 013083 292 ----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGR 367 (450)
Q Consensus 292 ----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR 367 (450)
..+.+|++||+..- ......+..+++ .|- --+.-+|+++...-.+||.++. -
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------------~~k~~~l~~~~~--~gR----H~~is~i~l~Q~~~~lp~~iR~--n 148 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------------KLKSKILRQFFN--NGR----HYNISIIFLSQSYFHLPPNIRS--N 148 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------------hhhhHHHHHHHh--ccc----ccceEEEEEeeecccCCHHHhh--c
Confidence 23789999997320 011234555554 221 1346778888888899999877 7
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 368 MDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 368 ~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
++.++-+. -+....+.+++++...
T Consensus 149 ~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 149 IDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred ceEEEEec-CcHHHHHHHHHhcccc
Confidence 88878776 4777788888877543
No 370
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.05 E-value=0.00053 Score=64.87 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=26.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
|+++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 88999999999999999999999877764
No 371
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0037 Score=70.02 Aligned_cols=143 Identities=20% Similarity=0.292 Sum_probs=91.4
Q ss_pred CcccccC-hHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEec
Q 013083 207 FNTLALD-SELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDL 275 (450)
Q Consensus 207 f~~l~~~-~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~ 275 (450)
++.++|. ++-.+.+++.+. ++ -+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~----Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS----RK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh----cc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6778786 555556655542 22 24788999999999999999999976 345666776
Q ss_pred CccCC--------chhHHHHHhc---CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCC
Q 013083 276 TDVQS--------NSDLRSLLLS---MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSE 344 (450)
Q Consensus 276 ~~~~~--------~~~L~~l~~~---~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~ 344 (450)
..+.. +..++.++.. ...+.||+|||++.+...... ........+|..+-+ .+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-----------~~~~d~~nlLkp~L~-----rg 315 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-----------YGAIDAANLLKPLLA-----RG 315 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-----------chHHHHHHhhHHHHh-----cC
Confidence 65421 3455566554 447889999999999751111 112223333333222 13
Q ss_pred CeEEEEEcCCC-----CCCCccccCCCcceeEEEeCCCCHHH
Q 013083 345 GRIIIFTTNHK-----EKLDPALLRPGRMDMHIHMSYCTASV 381 (450)
Q Consensus 345 ~~iiI~TTN~~-----~~ld~aLlrpgR~d~~I~~~~p~~~~ 381 (450)
+..+|+||..- -.=||+|-| ||+. +.++.|+.+.
T Consensus 316 ~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~ 354 (898)
T KOG1051|consen 316 GLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVEN 354 (898)
T ss_pred CeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccc
Confidence 36677655422 234899999 9988 7788888654
No 372
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0044 Score=59.59 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=35.0
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH---cCCcEEEEecCccCCchhHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH---LKFDIYDLDLTDVQSNSDLRS 286 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~---l~~~~~~l~~~~~~~~~~L~~ 286 (450)
|.+....+|++||||||||+++..++.+ -|.+.+.+.... +...+.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~ 66 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRR 66 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHH
Confidence 7788888999999999999999876554 267787777654 3334444
No 373
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.03 E-value=0.0014 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..+.|.||+|+|||||.+.|+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999876
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=97.02 E-value=0.02 Score=59.97 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCh-hHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCccC
Q 013083 216 LKKAIMEDLDNFMNGK-EYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDVQ 279 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~~ 279 (450)
+++.+.+.+...+... ..+. .....+..+++.||+|+||||++..+|.++ +..+..+++....
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~-~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELN-LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred HHHHHHHHHHHHhCCCcceee-ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4455555555555421 1111 112235678999999999999998888865 5667777776554
No 375
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.00097 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.5
Q ss_pred eeeeCCCCCchHHHHHHHHHHc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l 266 (450)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999996
No 376
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.00 E-value=0.0022 Score=62.98 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=23.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.++++.||||+||||+.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999874
No 377
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.00 E-value=0.0081 Score=70.09 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=82.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhH----------------HHHHhcCCCceEEEEEcccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDL----------------RSLLLSMPSRSMLVIEDIDCSI 306 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L----------------~~l~~~~~~~sIlviDdiD~l~ 306 (450)
-.+|+.||..+|||+++..+|...|-.|+.++-.+.....+. --+...++++.-||+||..-.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLA- 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLA- 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccC-
Confidence 469999999999999999999999999999987654321111 112333456778999998633
Q ss_pred cccccCcccccCCCCCCchhhHHhHHHHhhcccc-------cCCCCeEEEEEcCCCC------CCCccccCCCcceeEEE
Q 013083 307 TLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS-------CCSEGRIIIFTTNHKE------KLDPALLRPGRMDMHIH 373 (450)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~-------~~~~~~iiI~TTN~~~------~ld~aLlrpgR~d~~I~ 373 (450)
+ .+.-..|+.||.--..+.- ...++..+++|-|.|. .|..|++. ||- .++
T Consensus 968 p--------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~h 1030 (4600)
T COG5271 968 P--------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMH 1030 (4600)
T ss_pred c--------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhh
Confidence 1 2223345555532222111 1123456677778763 36788888 883 366
Q ss_pred eCCCCHHHHHHHHHHHh
Q 013083 374 MSYCTASVFEQLAFNYL 390 (450)
Q Consensus 374 ~~~p~~~~r~~l~~~~l 390 (450)
|..-.+.+..+|+..-.
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 66666677776665433
No 378
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.98 E-value=0.00046 Score=58.81 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l 266 (450)
|+|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 379
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.98 E-value=0.0022 Score=59.09 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=22.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
++.++|.||+|+||++++..|+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3679999999999999999999986
No 380
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0054 Score=59.48 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH---cCCcEEEEecCccCCchhHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH---LKFDIYDLDLTDVQSNSDLRSL 287 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~---l~~~~~~l~~~~~~~~~~L~~l 287 (450)
|.|.+..+|++||||||||+|+..++.+ -|.+.+.++..+ +...+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~ 69 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRN 69 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHH
Confidence 6777888999999999999998876654 266777777655 33344443
No 381
>PRK04182 cytidylate kinase; Provisional
Probab=96.97 E-value=0.00067 Score=61.62 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=27.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.|+|.|+||||||++++.+|..+++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999988763
No 382
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.97 E-value=0.0026 Score=64.52 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~ 264 (450)
|++...-+.|+||||||||+|+..+|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 567677788999999999999998874
No 383
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.0021 Score=61.14 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=32.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS 280 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~ 280 (450)
+.-|.+.|++|+||||+++.|+..+ +.+++.+.+.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3467799999999999999999999 67777777776643
No 384
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.96 E-value=0.0024 Score=62.59 Aligned_cols=86 Identities=16% Similarity=0.327 Sum_probs=53.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEe------
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLD------ 274 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~------ 274 (450)
+.+++++.+.++..+.+.+.+. .+ ...+++.||+|+||||+++++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~----~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE----KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh----cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 3467888887776665544331 11 23588999999999999999988774 3455442
Q ss_pred cCcc-----C--CchhHHHHHhcC--CCceEEEEEccc
Q 013083 275 LTDV-----Q--SNSDLRSLLLSM--PSRSMLVIEDID 303 (450)
Q Consensus 275 ~~~~-----~--~~~~L~~l~~~~--~~~sIlviDdiD 303 (450)
...+ . ....+...+..+ ..|.+|++.||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111 0 011233333332 378999999995
No 385
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.96 E-value=0.0023 Score=59.15 Aligned_cols=61 Identities=13% Similarity=0.280 Sum_probs=38.9
Q ss_pred eeeeCCCCCchHHHHHHHHH-----HcCCcE--------------EEEecCccC---------CchhHHHHHhcCCCceE
Q 013083 245 YLLYGPPGTGKSSLIAAMAN-----HLKFDI--------------YDLDLTDVQ---------SNSDLRSLLLSMPSRSM 296 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~-----~l~~~~--------------~~l~~~~~~---------~~~~L~~l~~~~~~~sI 296 (450)
++|.||.|+|||++.++++- +.|..+ ..+...+.. .-..+..++..+.+|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999993 223221 111111110 12334555666678999
Q ss_pred EEEEccccc
Q 013083 297 LVIEDIDCS 305 (450)
Q Consensus 297 lviDdiD~l 305 (450)
+++||...-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999999643
No 386
>PTZ00035 Rad51 protein; Provisional
Probab=96.96 E-value=0.0024 Score=64.83 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~ 265 (450)
|++...-+.|+||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 6676777889999999999999988854
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.95 E-value=0.0016 Score=60.83 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred ceeeeeCCCCCchHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMA 263 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA 263 (450)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 388
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.95 E-value=0.011 Score=59.18 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
.+..+-|+|+=|+|||++++.+-+++...
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 46788999999999999999999888544
No 389
>PRK14527 adenylate kinase; Provisional
Probab=96.94 E-value=0.00065 Score=63.01 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=27.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+.-+++.||||+||||+++.+|..++...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35689999999999999999999998765443
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.93 E-value=0.00082 Score=63.04 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=27.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
-++++||+|||||.++-++|+.+|.+++.+|--..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 57899999999999999999999999999885444
No 391
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.93 E-value=0.00066 Score=61.15 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=20.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
|.|.|+||||||||+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999999 87765
No 392
>PRK04040 adenylate kinase; Provisional
Probab=96.92 E-value=0.00088 Score=62.26 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=25.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc--CCcEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL--KFDIY 271 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l--~~~~~ 271 (450)
.-++++|+|||||||+++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468899999999999999999999 55553
No 393
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.91 E-value=0.0029 Score=60.04 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=39.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH-----cCCcE---------EEEecCccC-------Cc-------hhHHHHHhcCCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH-----LKFDI---------YDLDLTDVQ-------SN-------SDLRSLLLSMPSR 294 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~-----l~~~~---------~~l~~~~~~-------~~-------~~L~~l~~~~~~~ 294 (450)
+-++|.||.|+|||++.+.+|.. .+.++ +.--...+. .. ..+..++..+.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 56889999999999999999742 22211 110011111 01 2355667777899
Q ss_pred eEEEEEccc
Q 013083 295 SMLVIEDID 303 (450)
Q Consensus 295 sIlviDdiD 303 (450)
+++++||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 394
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.91 E-value=0.0025 Score=55.04 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=41.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC--------------------cEEEEecCccCCchhHHHH--HhcCCCceEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF--------------------DIYDLDLTDVQSNSDLRSL--LLSMPSRSMLVI 299 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~--------------------~~~~l~~~~~~~~~~L~~l--~~~~~~~sIlvi 299 (450)
..-++|+|+=|+|||++++++|..++. +++-+|+--+.+.+.+..+ +......+|++|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 457899999999999999999999964 3344455555555544443 233346788888
Q ss_pred Eccccc
Q 013083 300 EDIDCS 305 (450)
Q Consensus 300 DdiD~l 305 (450)
|=-+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 755544
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.90 E-value=0.0021 Score=60.53 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=38.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH-----cCCcE---------E-----EEecCc-cC--------CchhHHHHHhcCCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH-----LKFDI---------Y-----DLDLTD-VQ--------SNSDLRSLLLSMPSR 294 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~-----l~~~~---------~-----~l~~~~-~~--------~~~~L~~l~~~~~~~ 294 (450)
+-++|.||.|+|||++.+.++.. +|..+ + .+...+ .. .-..+..++..+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~ 109 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGD 109 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999743 23221 1 011110 00 012344455556789
Q ss_pred eEEEEEcccc
Q 013083 295 SMLVIEDIDC 304 (450)
Q Consensus 295 sIlviDdiD~ 304 (450)
+++++||+..
T Consensus 110 ~lvllDE~~~ 119 (204)
T cd03282 110 SLVLIDELGR 119 (204)
T ss_pred cEEEeccccC
Confidence 9999999853
No 396
>PRK01184 hypothetical protein; Provisional
Probab=96.90 E-value=0.00082 Score=61.75 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.9
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
-++|.||||+||||+++ ++.+++++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999887655
No 397
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0021 Score=56.92 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=39.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC-----------cEEEEecCccCCchhHHHHHh---cCCCceEEEEEcccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF-----------DIYDLDLTDVQSNSDLRSLLL---SMPSRSMLVIEDIDCSI 306 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~-----------~~~~l~~~~~~~~~~L~~l~~---~~~~~sIlviDdiD~l~ 306 (450)
...+.|.||+|+|||||+++|++.+.. .+..+. ++ +....+++.. -+.+|.++++||-..-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--QL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--cC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 456889999999999999999997631 111111 12 2223333321 13588999999986443
No 398
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.90 E-value=0.0023 Score=64.39 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=40.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEec-Ccc------------CCchhHHHHHhcC--CCceEEEEEc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDL-TDV------------QSNSDLRSLLLSM--PSRSMLVIED 301 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~-~~~------------~~~~~L~~l~~~~--~~~sIlviDd 301 (450)
+.++|+.|++|+||||++++++.++ +..++.++- .++ ...-.+..++..+ .+|..|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999986 234444431 111 0112344444332 3688898988
Q ss_pred cc
Q 013083 302 ID 303 (450)
Q Consensus 302 iD 303 (450)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 399
>PHA00350 putative assembly protein
Probab=96.89 E-value=0.0027 Score=65.43 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=62.2
Q ss_pred eeeeeCCCCCchHHHHHH--HHHHc--CCcEEEEecCccCCchhH---------------------------HHHHhcCC
Q 013083 244 GYLLYGPPGTGKSSLIAA--MANHL--KFDIYDLDLTDVQSNSDL---------------------------RSLLLSMP 292 (450)
Q Consensus 244 giLL~GppGTGKTsla~a--lA~~l--~~~~~~l~~~~~~~~~~L---------------------------~~l~~~~~ 292 (450)
-++++|.||+|||+-+-. |-..+ |.+++. ++..+. .+.+ ...+.-.+
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p 80 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRP 80 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCC
Confidence 368999999999997765 33233 666553 443321 0111 11111235
Q ss_pred CceEEEEEcccccccccccCcccccCC-CCCCc----hhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCc
Q 013083 293 SRSMLVIEDIDCSITLENRDSKDQAGH-NQGDN----KVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGR 367 (450)
Q Consensus 293 ~~sIlviDdiD~l~~~~~~~~~~~~~~-~~~~~----~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR 367 (450)
..++|||||+..+++.+...+....-. ..+.. ...-..+++.+... ...+.=||++|.++..||..++. +
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H---RH~G~DIiliTQ~~~~Id~~iR~--l 155 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH---RHYNWDIILLTPNIRKIHSDIRA--M 155 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh---cccCceEEEEeCCHHHhhHHHHH--h
Confidence 789999999999986321100000000 00000 00011223333211 11233478889999999988876 6
Q ss_pred ceeE
Q 013083 368 MDMH 371 (450)
Q Consensus 368 ~d~~ 371 (450)
++++
T Consensus 156 vE~~ 159 (399)
T PHA00350 156 IEMT 159 (399)
T ss_pred hhhe
Confidence 6653
No 400
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.88 E-value=0.0034 Score=66.22 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=45.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC--------------------CchhHHHHHhc--CC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ--------------------SNSDLRSLLLS--MP 292 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~L~~l~~~--~~ 292 (450)
|++...-+||+|+||+|||+|+..+|..+ +.+++.++..+-. .+..+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56777789999999999999999987765 3456665543210 01112222211 23
Q ss_pred CceEEEEEcccccc
Q 013083 293 SRSMLVIEDIDCSI 306 (450)
Q Consensus 293 ~~sIlviDdiD~l~ 306 (450)
++.+||||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 67899999998764
No 401
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.88 E-value=0.00095 Score=66.21 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=26.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-CCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-KFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-~~~~~~l 273 (450)
.-+++.|||||||||+++.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 468899999999999999999999 6655543
No 402
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.88 E-value=0.00091 Score=60.29 Aligned_cols=29 Identities=28% Similarity=0.645 Sum_probs=26.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+.+.|++|+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999987664
No 403
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.00092 Score=61.59 Aligned_cols=27 Identities=41% Similarity=0.723 Sum_probs=23.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
.++|.||||+||||+|+.||+.++.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999999955543
No 404
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.86 E-value=0.00067 Score=60.36 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.4
Q ss_pred eeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 247 LYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 247 L~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
|.||||+|||++++.||..+++..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765543
No 405
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.86 E-value=0.0019 Score=65.59 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=64.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCccccc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQA 317 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~ 317 (450)
|+|.+.+++|||||+||||+++-++-+.++-.++..--+. =+--+.-....-|-+|||+-...
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~------ShFWLqPL~d~Ki~llDDAT~~c----------- 320 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK------SHFWLQPLADAKIALLDDATYPC----------- 320 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT------SCGGGGGGCT-SSEEEEEE-HHH-----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC------CcccccchhcCcEEEEcCCcccH-----------
Confidence 6788899999999999999999999999998887642111 11122333445678889874221
Q ss_pred CCCCCCchhhH-HhHHHHhhcccccC--CC-------CeEEEEEcCCCCCCCc---cccCCCcceeEEEeCCCC
Q 013083 318 GHNQGDNKVTL-SGLLNFIDGLWSCC--SE-------GRIIIFTTNHKEKLDP---ALLRPGRMDMHIHMSYCT 378 (450)
Q Consensus 318 ~~~~~~~~~~l-~~LL~~ldg~~~~~--~~-------~~iiI~TTN~~~~ld~---aLlrpgR~d~~I~~~~p~ 378 (450)
=..+ .-|-|.+||-.-+. .. ..-++.|||.-=.-++ -|.+ |+.. ++|+.|-
T Consensus 321 -------W~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri~~-f~F~n~~ 384 (432)
T PF00519_consen 321 -------WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RITC-FEFPNPF 384 (432)
T ss_dssp -------HHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TEEE-EE--S-S
T ss_pred -------HHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eEEE-EEcCCcc
Confidence 0112 22457788753210 00 0246678885433333 3445 7744 7776643
No 406
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.86 E-value=0.003 Score=64.99 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-+++.||||+|||++++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4589999999999999999999863
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.019 Score=59.62 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCh-hHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCcc
Q 013083 215 ELKKAIMEDLDNFMNGK-EYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDV 278 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~ 278 (450)
+..+.+.+.+...+... ..+...|...+..++|.||+|+||||++..+|..+ |..+..+++...
T Consensus 195 ~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 195 NVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred HHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 34455555555544321 11222222223458899999999999999999754 445555555443
No 408
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.85 E-value=0.0057 Score=68.70 Aligned_cols=63 Identities=16% Similarity=0.355 Sum_probs=39.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-----CC----------cEEE---EecCccC-----------CchhHHHHHhcCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-----KF----------DIYD---LDLTDVQ-----------SNSDLRSLLLSMP 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-----~~----------~~~~---l~~~~~~-----------~~~~L~~l~~~~~ 292 (450)
.+.++|.||.+.|||++.+.++-.. |. ++++ .+..+-. ....+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 3678999999999999999887542 32 1211 1111100 1123344555667
Q ss_pred CceEEEEEcccc
Q 013083 293 SRSMLVIEDIDC 304 (450)
Q Consensus 293 ~~sIlviDdiD~ 304 (450)
.++++++||+..
T Consensus 407 ~~sLvLlDE~~~ 418 (782)
T PRK00409 407 KNSLVLFDELGA 418 (782)
T ss_pred cCcEEEecCCCC
Confidence 899999999964
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.83 E-value=0.0014 Score=65.45 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=23.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.++|+.||+|+||||+++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 410
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.004 Score=58.38 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=69.0
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CC----------------------------------cEEEEecCccCC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KF----------------------------------DIYDLDLTDVQS 280 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~----------------------------------~~~~l~~~~~~~ 280 (450)
|+|.+.-+|+-|+.|||||.|.+-+|-=+ +. .++.++...+..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 46777778899999999999999888533 22 233333333321
Q ss_pred c-----hhHHHHHhc--CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 281 N-----SDLRSLLLS--MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 281 ~-----~~L~~l~~~--~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+ .-|..++.. .....||+||-+..+.. ..+...+..+++.+..+ |..+.+||+|.|
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~--------------~~~~~~vl~fm~~~r~l---~d~gKvIilTvh 166 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFAT--------------YDSEDAVLNFMTFLRKL---SDLGKVIILTVH 166 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhh--------------cccHHHHHHHHHHHHHH---HhCCCEEEEEeC
Confidence 1 222222222 34678999999987753 11222334444444444 346677777764
Q ss_pred CCCCCCccccCCC--cceeEEEeCC
Q 013083 354 HKEKLDPALLRPG--RMDMHIHMSY 376 (450)
Q Consensus 354 ~~~~ld~aLlrpg--R~d~~I~~~~ 376 (450)
|+.++++++-+= -+|.++.+..
T Consensus 167 -p~~l~e~~~~rirs~~d~~l~L~~ 190 (235)
T COG2874 167 -PSALDEDVLTRIRSACDVYLRLRL 190 (235)
T ss_pred -hhhcCHHHHHHHHHhhheeEEEEh
Confidence 667777776511 2455555443
No 411
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.83 E-value=0.0087 Score=66.76 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=40.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---C--CcEEEEecCcc----------CCchhHHHHHhcC------------CCce
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---K--FDIYDLDLTDV----------QSNSDLRSLLLSM------------PSRS 295 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~--~~~~~l~~~~~----------~~~~~L~~l~~~~------------~~~s 295 (450)
+-++|.|+||||||++++++...+ + .+++-+-.+.- .....+++++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468899999999999999997766 3 44554433321 0123455555321 1357
Q ss_pred EEEEEccccc
Q 013083 296 MLVIEDIDCS 305 (450)
Q Consensus 296 IlviDdiD~l 305 (450)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999654
No 412
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.81 E-value=0.0022 Score=66.69 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=91.7
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCC--CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc--C-Cchh
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGK--AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV--Q-SNSD 283 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~--~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~--~-~~~~ 283 (450)
.+.|..++|+.++-.|.--.... ..-|. .-.-+++|-|.||+.||-|.+.+.+-....+|.-.-.+- + +..-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~---~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS---PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC---CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 35677888888766553222110 00111 112358999999999999999999988777775432221 1 1111
Q ss_pred HHH-----HHhc-----CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHH------hhcccccCCCCeE
Q 013083 284 LRS-----LLLS-----MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNF------IDGLWSCCSEGRI 347 (450)
Q Consensus 284 L~~-----l~~~-----~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~------ldg~~~~~~~~~i 347 (450)
++. +..+ ....+|..|||+|.+... ++..+...+.. =.|+..+.....-
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~---------------DRtAIHEVMEQQTISIaKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES---------------DRTAIHEVMEQQTISIAKAGINTTLNARTS 484 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh---------------hhHHHHHHHHhhhhhhhhhccccchhhhHH
Confidence 110 0000 135679999999988431 11111111111 0111111112233
Q ss_pred EEEEcCCC-------------CCCCccccCCCcceeEEEe-CCCCHHHHHHHHHHHhCc
Q 013083 348 IIFTTNHK-------------EKLDPALLRPGRMDMHIHM-SYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 348 iI~TTN~~-------------~~ld~aLlrpgR~d~~I~~-~~p~~~~r~~l~~~~l~~ 392 (450)
|+++.|.. =.|+.||++ |||...-+ ..|+.+.=+.|+++..-+
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhh
Confidence 56666643 147899999 99986655 568888878888876543
No 413
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.81 E-value=0.0011 Score=61.10 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=25.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
..+.|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999988766544
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.0041 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...+.|.||.|+|||||++.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4568899999999999999999976
No 415
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.80 E-value=0.0035 Score=63.69 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.0
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+++|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 47999999999999999988776443
No 416
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.79 E-value=0.0074 Score=60.27 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEE----EecCccCCchhHHHH
Q 013083 212 LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYD----LDLTDVQSNSDLRSL 287 (450)
Q Consensus 212 ~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~----l~~~~~~~~~~L~~l 287 (450)
+++++++-+.+.+-..+... .+....++|+|+.|+|||+++..|...+|-.... +.+.++.+. +.-
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~ 122 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFG 122 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---Cch
Confidence 34455555555554443321 3345778999999999999999999988754322 122222110 111
Q ss_pred HhcCCCceEEEEEcccc
Q 013083 288 LLSMPSRSMLVIEDIDC 304 (450)
Q Consensus 288 ~~~~~~~sIlviDdiD~ 304 (450)
+.....+-+++.+|++.
T Consensus 123 ~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 123 LARLEGKRAVIGDEVQK 139 (304)
T ss_pred hhhhcCCEEEEecCCCC
Confidence 22344677888899863
No 417
>PRK14526 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=62.53 Aligned_cols=28 Identities=29% Similarity=0.702 Sum_probs=25.2
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
++|.||||+||||+++.+|..++.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 418
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.78 E-value=0.0071 Score=61.77 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~ 267 (450)
-.||.||||||||+|++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999873
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.75 E-value=0.0027 Score=61.89 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRSLL 288 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~l~ 288 (450)
|.|.++.+|++|+||||||+++...+... |.+++.+...+. ...+.+.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 67778899999999999999998887765 677888877663 34444443
No 420
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.75 E-value=0.031 Score=56.01 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=50.4
Q ss_pred CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEE--EEEcC---CCC--CCCccccCC
Q 013083 293 SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRII--IFTTN---HKE--KLDPALLRP 365 (450)
Q Consensus 293 ~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ii--I~TTN---~~~--~ld~aLlrp 365 (450)
-|.++.||++.++.....=.+.+. ..-....-.....|++.+.|-..- ..+.++ +.+|. .+. .++.+|...
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~-~~I~~~~L~l~~~f~~~~s~~~~~-~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~ 233 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDF-KPIHPHDLTLVRLFLDLLSGKRDF-KNGAVVTALAATSVSNAPKSPTLPVALGGK 233 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCC-ccccHHHhhHHHHHHHHhcCcccc-CCCeEEEEEeccccccccCCccchhhhccc
Confidence 377888999999975311111100 000111223345555554443332 233443 44432 222 455566531
Q ss_pred -C-----cce-------------eEEEeCCCCHHHHHHHHHHHhCc
Q 013083 366 -G-----RMD-------------MHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 366 -g-----R~d-------------~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
+ -|. ..|+++..+.++.+.++..|...
T Consensus 234 ~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 234 EGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred cCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 1 111 15788999999999998888753
No 421
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.74 E-value=0.0016 Score=58.03 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6799999999999999999998 65666554
No 422
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.72 E-value=0.0017 Score=63.77 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=33.8
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC----------CchhHHHHHhc-----CCCceEEEEEccccc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ----------SNSDLRSLLLS-----MPSRSMLVIEDIDCS 305 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~----------~~~~L~~l~~~-----~~~~sIlviDdiD~l 305 (450)
++|+|.||+|||++++.|+.++ +..+..++-..+. .+..++..+.. .....|+++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999986 5666666533321 23333333322 245688899988654
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.70 E-value=0.0081 Score=63.98 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH----cCCcEEEEecCccCCchhHHHHHhc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH----LKFDIYDLDLTDVQSNSDLRSLLLS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~----l~~~~~~l~~~~~~~~~~L~~l~~~ 290 (450)
|++..+.+|+.||||||||+|+..++.+ .+.+.+.+.+.+ +.+++.+-..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHHHHH
Confidence 6888899999999999999999987543 267888887753 44455444333
No 424
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.70 E-value=0.0036 Score=62.97 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~ 264 (450)
|++...-+.++||||+|||+++..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 566667788999999999999998886
No 425
>PF13479 AAA_24: AAA domain
Probab=96.67 E-value=0.0009 Score=63.34 Aligned_cols=60 Identities=30% Similarity=0.483 Sum_probs=38.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc-------------cCCchhHHHHHhc----CCCceEEEEEccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD-------------VQSNSDLRSLLLS----MPSRSMLVIEDIDCS 305 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~-------------~~~~~~L~~l~~~----~~~~sIlviDdiD~l 305 (450)
-.++||||||+|||+++..+-+-+ +++++.+. +.+-.++.+.+.. ...--.||||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 368999999999999999882211 22333221 1234555555433 235679999988876
No 426
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.0038 Score=63.36 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~ 265 (450)
|++...-++++|+||+|||+++..+|-.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 5666677889999999999999888743
No 427
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.67 E-value=0.0061 Score=63.97 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=56.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCce-eeeeCCCCCchHHHHHHHHHHcCCc---EEEE------
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRG-YLLYGPPGTGKSSLIAAMANHLKFD---IYDL------ 273 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GppGTGKTsla~alA~~l~~~---~~~l------ 273 (450)
..+|+.+.+.+...+.+.+.+. . +.| +|+.||.|+||||...++-++++.+ ++.+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~----~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN----R-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh----C-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4578999999988888766553 2 245 6688999999999999999998643 3333
Q ss_pred ecCcc---CC--------chhHHHHHhcCCCceEEEEEccc
Q 013083 274 DLTDV---QS--------NSDLRSLLLSMPSRSMLVIEDID 303 (450)
Q Consensus 274 ~~~~~---~~--------~~~L~~l~~~~~~~sIlviDdiD 303 (450)
....+ .- ...|+.++. ..|.||.+.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LR--qDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILR--QDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhc--cCCCeEEEeccC
Confidence 22222 11 222333332 368999999995
No 428
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.67 E-value=0.0017 Score=62.78 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=26.1
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
++|.|+||+||||+++.+|.++ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 456666654
No 429
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.011 Score=62.90 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCcc----------------------CCchhHHHHHhcCCC
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDV----------------------QSNSDLRSLLLSMPS 293 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~----------------------~~~~~L~~l~~~~~~ 293 (450)
++..+.|.||+|+||||++..||..+ +..+..++.... .+...+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35678899999999999999999764 233444433221 122445566666666
Q ss_pred ceEEEEEcccc
Q 013083 294 RSMLVIEDIDC 304 (450)
Q Consensus 294 ~sIlviDdiD~ 304 (450)
..+|+||....
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 77888888743
No 430
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.63 E-value=0.0023 Score=59.98 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=25.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
+.-+++.|+||+||||+++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 35689999999999999999999988754
No 431
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.60 E-value=0.0019 Score=69.63 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.++|.|.||+||||+.+.+|+.++++|+++|-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999873
No 432
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.60 E-value=0.014 Score=59.22 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=74.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC----------------------------chhHHHHHhcC--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS----------------------------NSDLRSLLLSM-- 291 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~----------------------------~~~L~~l~~~~-- 291 (450)
+..+.|||-.|||||.+++.+-++++.+.+-+++-+--+ -..+..++...
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~ 109 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPA 109 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHH
Confidence 556799999999999999999999998888776544311 01122233331
Q ss_pred -C---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCc
Q 013083 292 -P---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGR 367 (450)
Q Consensus 292 -~---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR 367 (450)
. ....|++|.+|.+-+ .+...+..|+..- .+.. ...+.|.....+. .+.-+.+-|.
T Consensus 110 ~t~~d~~~~liLDnad~lrD---------------~~a~ll~~l~~L~-el~~---~~~i~iils~~~~-e~~y~~n~g~ 169 (438)
T KOG2543|consen 110 ATNRDQKVFLILDNADALRD---------------MDAILLQCLFRLY-ELLN---EPTIVIILSAPSC-EKQYLINTGT 169 (438)
T ss_pred hhccCceEEEEEcCHHhhhc---------------cchHHHHHHHHHH-HHhC---CCceEEEEecccc-HHHhhcccCC
Confidence 1 256788999998842 2234455554432 2221 2233333332211 0111222233
Q ss_pred ce-eEEEeCCCCHHHHHHHHHHH
Q 013083 368 MD-MHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 368 ~d-~~I~~~~p~~~~r~~l~~~~ 389 (450)
++ ..++||.++.++.++|+.+-
T Consensus 170 ~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 170 LEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CCceEEecCCCCHHHHHHHHhcC
Confidence 32 45899999999888877643
No 433
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.57 E-value=0.003 Score=67.16 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=41.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc--cC------CchhHHHHHhc-----CCCceEEEEEcccccc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD--VQ------SNSDLRSLLLS-----MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~~~--~~------~~~~L~~l~~~-----~~~~sIlviDdiD~l~ 306 (450)
++||+|.||||||-+.+.+++.....++.--... ++ .+.--++...+ ...++|.+|||+|.+-
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhc
Confidence 4999999999999999999998877776532211 11 00001111111 1367899999999884
No 434
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.57 E-value=0.017 Score=62.00 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=78.8
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc--CCcEEEEecCccCCchhHH-HHHhcC------------------CCceEEEE
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL--KFDIYDLDLTDVQSNSDLR-SLLLSM------------------PSRSMLVI 299 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l--~~~~~~l~~~~~~~~~~L~-~l~~~~------------------~~~sIlvi 299 (450)
+.-.+|+.|.|||||-.+++++.+.. .-+++.++|..+.. ..+. ++|.-. .....+|+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~-~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE-ALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH-HhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 34579999999999999999998876 45899999998842 2222 222111 13468999
Q ss_pred EcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-cccCC-----CCeEEEEEcCCCCCCCccccCCCccee---
Q 013083 300 EDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL-WSCCS-----EGRIIIFTTNHKEKLDPALLRPGRMDM--- 370 (450)
Q Consensus 300 DdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~-~~~~~-----~~~iiI~TTN~~~~ld~aLlrpgR~d~--- 370 (450)
|||..+. -...+.||..+..- .---| -.+-||++|+..= ..|.+.|||..
T Consensus 414 deIgd~p------------------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLy 472 (606)
T COG3284 414 DEIGDMP------------------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLY 472 (606)
T ss_pred HHhhhch------------------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHH
Confidence 9997652 23556777776521 11111 1245677776531 35667777753
Q ss_pred ------EEEeCCCC-HHHHHHHHHHHhCcc
Q 013083 371 ------HIHMSYCT-ASVFEQLAFNYLGIS 393 (450)
Q Consensus 371 ------~I~~~~p~-~~~r~~l~~~~l~~~ 393 (450)
.|++|..- ...+..++.+++..+
T Consensus 473 yrL~~~~i~lP~lr~R~d~~~~l~~~~~~~ 502 (606)
T COG3284 473 YRLNAFVITLPPLRERSDRIPLLDRILKRE 502 (606)
T ss_pred HHhcCeeeccCchhcccccHHHHHHHHHHc
Confidence 34444432 233445666666444
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.57 E-value=0.007 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..++.||.|+|||+++++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999986543
No 436
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.56 E-value=0.003 Score=57.52 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+..+.|.|+||+|||+++++++..+ +..+..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3568899999999999999999987 334555554
No 437
>PLN02674 adenylate kinase
Probab=96.55 E-value=0.0023 Score=61.85 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.||||+||+|+++.||..+++..+..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4689999999999999999999998765543
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.55 E-value=0.0021 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..+++.||+|+||||++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999998774
No 439
>PRK10646 ADP-binding protein; Provisional
Probab=96.54 E-value=0.015 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
..++|.|+=|+|||++++++|+.++.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999974
No 440
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.54 E-value=0.0023 Score=58.78 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.7
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.|+|+||+||||+++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 888876665
No 441
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.088 Score=50.82 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=84.7
Q ss_pred Cce-eeeeCCCCCchHHHHHHHHHHcCCc---EEEEecCccCC--------------------------chhHHHHHhcC
Q 013083 242 KRG-YLLYGPPGTGKSSLIAAMANHLKFD---IYDLDLTDVQS--------------------------NSDLRSLLLSM 291 (450)
Q Consensus 242 ~rg-iLL~GppGTGKTsla~alA~~l~~~---~~~l~~~~~~~--------------------------~~~L~~l~~~~ 291 (450)
.+| +.++|+-|||||.+++|+...++-+ ++.++...+.. ...|..++..-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 354 5599999999999999887777432 22333333311 12233334444
Q ss_pred CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC--CCC--ccccCCCc
Q 013083 292 PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE--KLD--PALLRPGR 367 (450)
Q Consensus 292 ~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~--~ld--~aLlrpgR 367 (450)
..|.++++||.+.+.. ..-..+.-|.|.-++... .-.+++|+=..--. +++ ..+.. |
T Consensus 130 ~r~v~l~vdEah~L~~---------------~~le~Lrll~nl~~~~~~--~l~ivL~Gqp~L~~~lr~~~l~e~~~--R 190 (269)
T COG3267 130 KRPVVLMVDEAHDLND---------------SALEALRLLTNLEEDSSK--LLSIVLIGQPKLRPRLRLPVLRELEQ--R 190 (269)
T ss_pred CCCeEEeehhHhhhCh---------------hHHHHHHHHHhhcccccC--ceeeeecCCcccchhhchHHHHhhhh--e
Confidence 5668999999987742 112223333333222111 12233333221101 111 23334 8
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhCcc--CCCcH--HHHHHHHhcCCCCHHHHHHHHH
Q 013083 368 MDMHIHMSYCTASVFEQLAFNYLGIS--HHHLF--EQIEEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 368 ~d~~I~~~~p~~~~r~~l~~~~l~~~--~~~l~--~ei~~l~~~~~~spa~i~~~L~ 420 (450)
++..|++++.+.++-...++..++.. +.+++ +.+..+-....-.|.-|.+.+.
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999999998788888777543 33332 2222222222336666655443
No 442
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.53 E-value=0.005 Score=61.58 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++...-++++||||||||+++..+|... +-.++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56767778999999999999999998763 23666776554
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.53 E-value=0.19 Score=52.72 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcChh-HHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCccC
Q 013083 216 LKKAIMEDLDNFMNGKE-YYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDVQ 279 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~~-~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~~ 279 (450)
+.+.+.+.+...+.... .+. .....+..+++.||||+||||++..+|.++ +..+..+++....
T Consensus 73 ~~~~v~~eL~~~l~~~~~~~~-~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 73 FIKIVHEELVAILGGENASLN-LAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred HHHHHHHHHHHHhCCCCcccc-cCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 44555555555554321 111 111224678999999999999999998874 5677777777554
No 444
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.002 Score=57.30 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=37.6
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhc
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLS 290 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~ 290 (450)
|.+-.+++-|+.||||||++++++.+++.+|++ ..++.+.++..++-..
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~~G 58 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMTQG 58 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHhcC
Confidence 345578899999999999999999999988865 4456566666655433
No 445
>PLN02165 adenylate isopentenyltransferase
Probab=96.51 E-value=0.0024 Score=64.27 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
..++|.||+|+|||+|+..||..++..++..|--
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4688999999999999999999999887766544
No 446
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.0065 Score=57.69 Aligned_cols=24 Identities=38% Similarity=0.683 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.+.|+.|||||||||+.+-+|.-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 468899999999999999999876
No 447
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.49 E-value=0.012 Score=56.63 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=54.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-----CCc---------E-----EEEecC-ccC--------CchhHHHHHhcCCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-----KFD---------I-----YDLDLT-DVQ--------SNSDLRSLLLSMPSR 294 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-----~~~---------~-----~~l~~~-~~~--------~~~~L~~l~~~~~~~ 294 (450)
+.++|.||..+|||++.+++|-.. |.. + ..+... ++. .-..+..++..+.++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 678999999999999999998754 321 1 111111 111 124566778888899
Q ss_pred eEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC
Q 013083 295 SMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE 356 (450)
Q Consensus 295 sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~ 356 (450)
++|+|||+-.-- +..+.......+++.+... .+..+++||+..+
T Consensus 124 sLvliDE~g~gT-------------~~~eg~ai~~aile~l~~~-----~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 124 SLVLIDELGRGT-------------NPEEGIAIAIAILEYLLEK-----SGCFVIIATHFHE 167 (235)
T ss_dssp EEEEEESTTTTS-------------SHHHHHHHHHHHHHHHHHT-----TT-EEEEEES-GG
T ss_pred eeeecccccCCC-------------ChhHHHHHHHHHHHHHHHh-----ccccEEEEeccch
Confidence 999999995321 1122333445555555431 1236777887664
No 448
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.49 E-value=0.004 Score=63.48 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468899999999999999999998
No 449
>PRK14529 adenylate kinase; Provisional
Probab=96.47 E-value=0.002 Score=61.43 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=25.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
++|.||||+||||+++.||..++++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987653
No 450
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.47 E-value=0.0099 Score=60.97 Aligned_cols=27 Identities=41% Similarity=0.648 Sum_probs=24.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
+..+++.||.|||||++++++...+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 467899999999999999999998844
No 451
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.026 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+....++||.|+|||||++.++.+.
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhccc
Confidence 4568999999999999999999876
No 452
>PRK10436 hypothetical protein; Provisional
Probab=96.45 E-value=0.017 Score=61.00 Aligned_cols=86 Identities=16% Similarity=0.386 Sum_probs=54.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEe------
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLD------ 274 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~------ 274 (450)
+.++++|.+.+...+.+.+.+. .+ ...+|+.||+|+||||+..++.++++ .+++.+.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~----~~----------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ----QP----------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH----hc----------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 3478899888877666655432 11 23578999999999999988888774 3455443
Q ss_pred cCcc-----C--CchhHHHHHhcC--CCceEEEEEccc
Q 013083 275 LTDV-----Q--SNSDLRSLLLSM--PSRSMLVIEDID 303 (450)
Q Consensus 275 ~~~~-----~--~~~~L~~l~~~~--~~~sIlviDdiD 303 (450)
+..+ . ....+...+... ..|.||+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111 0 112233444333 379999999985
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.45 E-value=0.0059 Score=65.05 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
|++....+|+.||||||||+|+..++... +-+++.+.
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67777889999999999999998888765 44444443
No 454
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.44 E-value=0.0057 Score=56.17 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=27.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ 279 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~ 279 (450)
..+.+.||+|+||||++++++..++.. .++...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~ 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLH 38 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccC
Confidence 458899999999999999999998874 34444443
No 455
>PRK12338 hypothetical protein; Provisional
Probab=96.44 E-value=0.0028 Score=63.44 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
+.-+++.|+|||||||+++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 35789999999999999999999998754
No 456
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.44 E-value=0.0025 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~ 268 (450)
-++|.||||+||||++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 457
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.44 E-value=0.0025 Score=57.32 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=29.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
..|.|.|.||+||||+|+++...| +.+++.+|...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 357899999999999999999987 678888876654
No 458
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.0091 Score=58.76 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCh-hHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 216 LKKAIMEDLDNFMNGK-EYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~-~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
..+.+.+.+...+..- ..+.. ....++.++|.||||+||||++..+|..+ +..+.-+++...
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~-~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIV-EENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcc-cCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3445555555555431 11211 11224678888999999999999999877 566666666543
No 459
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.43 E-value=0.0071 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=19.1
Q ss_pred ceeeeeCCCCCchHH-HHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSS-LIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTs-la~alA~~l 266 (450)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 578999999999999 555555554
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.42 E-value=0.0075 Score=60.68 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcC-hhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 215 ELKKAIMEDLDNFMNG-KEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~-~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
.+++.+.+.+...+.. ...+. .....+.-++|.||+|+||||++..+|..+ +..+.-+++..
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3455555555555541 11111 111234568899999999999999999987 45566555543
No 461
>PRK13764 ATPase; Provisional
Probab=96.42 E-value=0.0033 Score=68.10 Aligned_cols=26 Identities=38% Similarity=0.701 Sum_probs=23.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.++|++||||+||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999884
No 462
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.011 Score=56.13 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=41.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-----CC---------cEE-----EEecCc-cC--------CchhHHHHHhcCCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-----KF---------DIY-----DLDLTD-VQ--------SNSDLRSLLLSMPS 293 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-----~~---------~~~-----~l~~~~-~~--------~~~~L~~l~~~~~~ 293 (450)
.+.++|.||.|.|||++.+.++... |. +++ .+...+ +. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 3578999999999999998888753 21 111 111111 10 12445667888889
Q ss_pred ceEEEEEcccc
Q 013083 294 RSMLVIEDIDC 304 (450)
Q Consensus 294 ~sIlviDdiD~ 304 (450)
+++++|||+..
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999853
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.41 E-value=0.0082 Score=61.08 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=39.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEecC-c--------------cC-CchhHHHHHhcC--CCceEEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLDLT-D--------------VQ-SNSDLRSLLLSM--PSRSMLVIE 300 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~~~-~--------------~~-~~~~L~~l~~~~--~~~sIlviD 300 (450)
..+|+.||+|+||||+++++.+++. ..++.+.-. + +. ....+...+..+ ..|.+|+++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4688999999999999999998774 234433211 0 00 111233333332 478999999
Q ss_pred ccc
Q 013083 301 DID 303 (450)
Q Consensus 301 diD 303 (450)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 464
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.41 E-value=0.0027 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.784 Sum_probs=20.5
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
.++|.|+||+||||+++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999998
No 465
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.40 E-value=0.0064 Score=66.24 Aligned_cols=27 Identities=37% Similarity=0.583 Sum_probs=23.8
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.+.-+.|.||+|+|||||++.+++..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999999976
No 466
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.003 Score=57.62 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999885
No 467
>PLN02459 probable adenylate kinase
Probab=96.39 E-value=0.0038 Score=60.78 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=26.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.++|.||||+||||+++.+|..+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 478899999999999999999998766543
No 468
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.39 E-value=0.044 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..++|.|++|+||||++.+|.+.-
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4679999999999999999999853
No 469
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.38 E-value=0.026 Score=50.99 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=23.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc---CCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL---KFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l---~~~~~~l 273 (450)
-+.+|+++|+|||++|-++|-.. |..+..+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35689999999999999988765 5665553
No 470
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.38 E-value=0.0029 Score=60.04 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.1
Q ss_pred eeeeCCCCCchHHHHHHHHHHc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l 266 (450)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999984
No 471
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.36 E-value=0.0032 Score=58.85 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=29.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecCccC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLTDVQ 279 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~~~~ 279 (450)
|.-+++.|+||+|||+++..+...+ +-.++.++...+.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 5678999999999999999999988 7777788777663
No 472
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.021 Score=58.58 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
++.++|.||+|+||||++..+|..+ +..+..+++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 5678899999999999999999876 555666665554
No 473
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.33 E-value=0.0072 Score=65.74 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
.+.-+.+.||.|+|||||++.|++.+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35669999999999999999999987
No 474
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.32 E-value=0.0091 Score=58.23 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCccCCchhHHHHH--------------------
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTDVQSNSDLRSLL-------------------- 288 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~L~~l~-------------------- 288 (450)
|++.+.-+=|+||||+|||.|+..+|-.. +..++.+|...--+...+.++.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 34433333399999999999998887654 3447777755532222222221
Q ss_pred ---------hcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 289 ---------LSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 289 ---------~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
... .+-.+||||-|-.++...-... ++.......+..++..|..+..
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~-----~~~~~R~~~L~~~~~~L~~lA~ 175 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGR-----GDLAERQRMLARLARILKRLAR 175 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGST-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccc-----hhhHHHHHHHHHHHHHHHHHHH
Confidence 111 2456999999998865221100 0011234567777766666654
No 475
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.31 E-value=0.0052 Score=57.69 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC-CcEEEEecCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK-FDIYDLDLTD 277 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~-~~~~~l~~~~ 277 (450)
.-+.|.||+|||||||+++|++.++ ..+..++...
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 4678999999999999999999983 3444444443
No 476
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.31 E-value=0.0071 Score=61.24 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.++|+.||+|+||||++++++.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999885
No 477
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.31 E-value=0.029 Score=67.01 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=65.2
Q ss_pred CCCCCcc-cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc
Q 013083 203 HPMNFNT-LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN 281 (450)
Q Consensus 203 ~p~~f~~-l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~ 281 (450)
+|..+++ .+..+.+++.+.+....+..+ +..+||.||.|+|||+++..+|...+..++.++..+..+-
T Consensus 411 ~~~~~~~~~i~T~~vq~~la~~~~a~~~~-----------~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~ 479 (1856)
T KOG1808|consen 411 ELTSEATHYIITPRVQKNLADLARAISSG-----------KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDL 479 (1856)
T ss_pred ccccccceeeccHHHHHHHHHHHHHHhcC-----------CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchH
Confidence 4555666 566777777766665555442 2479999999999999999999999999999887665432
Q ss_pred hhHHH----------------HHhcCCCceEEEEEccccc
Q 013083 282 SDLRS----------------LLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 282 ~~L~~----------------l~~~~~~~sIlviDdiD~l 305 (450)
.++.. +...+.+.+.+|+|++...
T Consensus 480 qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 480 QEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred HHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 22211 2333456789999999643
No 478
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.31 E-value=0.0029 Score=61.05 Aligned_cols=31 Identities=29% Similarity=0.649 Sum_probs=22.7
Q ss_pred eeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 247 LYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 247 L~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
+.||||+||||+++++.+.+ +++++.+++.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 46999999999999999988 56677666544
No 479
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0061 Score=55.54 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=31.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
..+.|.|.+|+||||+|.+++..| |+..|.+|...+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 456789999999999999999987 888999987665
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.30 E-value=0.0051 Score=58.89 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~ 276 (450)
|.+++.-++|.|+||+|||+++..+|... +.+++.+++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 67777789999999999999988887654 6777766543
No 481
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.0078 Score=60.51 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++.+.-++++||||||||+++..+|... +..++.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 57777788999999999999999998653 23566666544
No 482
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.30 E-value=0.013 Score=61.27 Aligned_cols=133 Identities=20% Similarity=0.322 Sum_probs=73.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc-cC--C-----chhHHHHHhc-----CCCceEEEEEccccccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD-VQ--S-----NSDLRSLLLS-----MPSRSMLVIEDIDCSITLE 309 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~-~~--~-----~~~L~~l~~~-----~~~~sIlviDdiD~l~~~~ 309 (450)
-++||.|.|||.||-|.+-+-+-...-+|.-.-.+ .. + +..-++...+ ...++|++|||+|.+-+
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre-- 442 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE-- 442 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc--
Confidence 35999999999999999998776666666432111 10 0 1111222211 13578999999998732
Q ss_pred ccCcccccCCCCCCchhhHHhHHHH------hhcccccCCCCeEEEEEcCCC-----------CCCC--ccccCCCccee
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNF------IDGLWSCCSEGRIIIFTTNHK-----------EKLD--PALLRPGRMDM 370 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~------ldg~~~~~~~~~iiI~TTN~~-----------~~ld--~aLlrpgR~d~ 370 (450)
++++.+..-+.. =.|+....+...-|+++.|.+ +++| +.+++ |||+
T Consensus 443 -------------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDm 507 (729)
T KOG0481|consen 443 -------------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDM 507 (729)
T ss_pred -------------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccE
Confidence 222222222211 012211111222355666654 3344 88999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHhCc
Q 013083 371 HIHMSYC-TASVFEQLAFNYLGI 392 (450)
Q Consensus 371 ~I~~~~p-~~~~r~~l~~~~l~~ 392 (450)
++-+..- +++.=..|+++.+.+
T Consensus 508 IFIVKD~h~~~~D~~lAkHVI~v 530 (729)
T KOG0481|consen 508 IFIVKDEHDEERDITLAKHVINV 530 (729)
T ss_pred EEEEeccCcchhhhHHHHHhhhh
Confidence 7766543 443445566666543
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.30 E-value=0.0058 Score=58.15 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|.+....+++.||||||||+++..++... +..++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 66777889999999999999998876533 445555543
No 484
>PRK13808 adenylate kinase; Provisional
Probab=96.30 E-value=0.0034 Score=63.29 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=26.0
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
|+|.||||+|||+++..||..+++..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 88999999999999999999998866554
No 485
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.30 E-value=0.0037 Score=58.38 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=27.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-+.|+|++|+|||++++.+++.+|+++++.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4789999999999999999998899887544
No 486
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.29 E-value=0.005 Score=55.93 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=29.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ 279 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~ 279 (450)
.+++.||||+|||+++..+|..+ +..+..+++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 36789999999999999999876 6777778776553
No 487
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.28 E-value=0.014 Score=65.34 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=41.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC----------CchhHHHHHhc-------CCCceEEEEEcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ----------SNSDLRSLLLS-------MPSRSMLVIEDI 302 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~----------~~~~L~~l~~~-------~~~~sIlviDdi 302 (450)
+-++|.|+||||||++++++...+ +..+.-+-.+... ....+..++.. .....+|||||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999997654 6666666444321 11223333221 125689999999
Q ss_pred ccc
Q 013083 303 DCS 305 (450)
Q Consensus 303 D~l 305 (450)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 654
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.28 E-value=0.0044 Score=57.84 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=23.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||+|+|||+|++.|++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999999876
No 489
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.28 E-value=0.019 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
.++|.|+||+|||+++.++++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988543
No 490
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.27 E-value=0.025 Score=58.11 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=56.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC-------CcEEEEecCccC--------------------CchhHHHHHhcCCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK-------FDIYDLDLTDVQ--------------------SNSDLRSLLLSMPSR 294 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~-------~~~~~l~~~~~~--------------------~~~~L~~l~~~~~~~ 294 (450)
++.+.|.||.|+||||.++-||..+. .-++.+|.--++ +..++...+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56788999999999998888877663 344555443332 345555556666667
Q ss_pred eEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 295 SMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 295 sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
.+|++|=+... ..+...+.+|-..++... .-.+.+++.++
T Consensus 283 d~ILVDTaGrs----------------~~D~~~i~el~~~~~~~~---~i~~~Lvlsat 322 (407)
T COG1419 283 DVILVDTAGRS----------------QYDKEKIEELKELIDVSH---SIEVYLVLSAT 322 (407)
T ss_pred CEEEEeCCCCC----------------ccCHHHHHHHHHHHhccc---cceEEEEEecC
Confidence 78888776432 234455666666665542 23444444443
No 491
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.26 E-value=0.0033 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=22.9
Q ss_pred eCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 248 YGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 248 ~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.|||||||||++++++..++..+++-|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987655443
No 492
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.26 E-value=0.0039 Score=58.32 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=25.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
|+-++|.||+|+||||.+.-||.++ +..+--+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 3578999999999999999999887 4444444433
No 493
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.26 E-value=0.015 Score=64.74 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=43.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH---cCCcEEEEecCcc---------------------CCchhHHHHHh---c
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH---LKFDIYDLDLTDV---------------------QSNSDLRSLLL---S 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~---l~~~~~~l~~~~~---------------------~~~~~L~~l~~---~ 290 (450)
|.+..+.++++||||||||+|+..++.. .+..+..++...- .+.+.+..++. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5666788999999999999999654432 2445555543321 11122222221 1
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
...+.+||||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23688999999998863
No 494
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.26 E-value=0.0048 Score=61.73 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=29.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.-+++.||+|||||+++..+|..++..++..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 568899999999999999999999888776654
No 495
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.25 E-value=0.0046 Score=56.89 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=26.3
Q ss_pred eeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCcc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDV 278 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~ 278 (450)
+.+.|+||+|||++++.|+..++ .++..++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999874 44555544443
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.25 E-value=0.0037 Score=47.20 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
..+|+||.|+||||+..|+.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987654
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.24 E-value=0.013 Score=62.36 Aligned_cols=85 Identities=19% Similarity=0.370 Sum_probs=53.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCce-eeeeCCCCCchHHHHHHHHHHcC---CcEEEEec----
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRG-YLLYGPPGTGKSSLIAAMANHLK---FDIYDLDL---- 275 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-iLL~GppGTGKTsla~alA~~l~---~~~~~l~~---- 275 (450)
+.+++++.+.++..+.+...+. . +.| +|+.||+|+||||+..++.++++ ..++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~----~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR----R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh----c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4578888888877666554332 1 245 68999999999999999888774 34554421
Q ss_pred --CccC-----C--chhHHHHHhcC--CCceEEEEEccc
Q 013083 276 --TDVQ-----S--NSDLRSLLLSM--PSRSMLVIEDID 303 (450)
Q Consensus 276 --~~~~-----~--~~~L~~l~~~~--~~~sIlviDdiD 303 (450)
..+. . .......+..+ ..|.||++.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1110 0 11222233322 479999999985
No 498
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.22 E-value=0.0042 Score=57.66 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHc-CCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL-KFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l-~~~~~~l 273 (450)
+.+.|+|||||||+++.++..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 5688999999999999999998 4444433
No 499
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.21 E-value=0.0091 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred eeeeCCCCCchHHHHHHHHHH
Q 013083 245 YLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~ 265 (450)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999886
No 500
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.20 E-value=0.0035 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
+-++|.||+|+||||+++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 35789999999999999999997754
Done!