Query 013083
Match_columns 450
No_of_seqs 384 out of 2703
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.8E-38 9.4E-43 321.5 20.0 213 202-420 142-363 (405)
2 4b4t_I 26S protease regulatory 100.0 4.5E-38 1.5E-42 321.0 21.5 214 201-420 175-397 (437)
3 4b4t_M 26S protease regulatory 100.0 7.3E-38 2.5E-42 322.6 19.0 216 200-421 173-397 (434)
4 4b4t_L 26S protease subunit RP 100.0 2.4E-37 8.4E-42 318.9 21.3 213 202-420 175-396 (437)
5 4b4t_K 26S protease regulatory 100.0 2.4E-37 8E-42 318.5 19.9 214 202-421 166-389 (428)
6 4b4t_H 26S protease regulatory 100.0 3.2E-37 1.1E-41 317.4 19.0 213 202-420 203-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3.1E-33 1.1E-37 306.7 8.0 213 203-421 472-693 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.3E-31 4.4E-36 294.0 17.9 210 203-421 199-417 (806)
9 3cf0_A Transitional endoplasmi 100.0 4.8E-28 1.7E-32 239.2 21.4 215 201-421 8-231 (301)
10 2x8a_A Nuclear valosin-contain 100.0 2.2E-27 7.6E-32 231.7 20.7 210 203-421 5-228 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.2E-26 4E-31 231.7 23.3 219 202-435 6-235 (322)
12 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.5E-26 8.5E-31 220.7 22.3 212 204-421 2-224 (262)
13 3eie_A Vacuolar protein sortin 99.9 1.6E-26 5.6E-31 230.3 19.1 210 201-421 11-230 (322)
14 1lv7_A FTSH; alpha/beta domain 99.9 2.9E-26 1E-30 220.6 20.1 214 201-421 5-227 (257)
15 2ce7_A Cell division protein F 99.9 1.8E-26 6.1E-31 241.0 19.3 211 203-420 11-230 (476)
16 3h4m_A Proteasome-activating n 99.9 1.7E-26 5.7E-31 225.2 17.8 215 200-420 9-232 (285)
17 2qp9_X Vacuolar protein sortin 99.9 8.9E-26 3.1E-30 228.2 18.9 210 201-421 44-263 (355)
18 2zan_A Vacuolar protein sortin 99.9 4E-25 1.4E-29 229.9 19.8 220 201-435 127-357 (444)
19 3hu3_A Transitional endoplasmi 99.9 2.3E-25 7.9E-30 233.9 17.4 209 203-420 199-416 (489)
20 2r62_A Cell division protease 99.9 4.4E-26 1.5E-30 220.4 7.9 215 202-421 5-228 (268)
21 2dhr_A FTSH; AAA+ protein, hex 99.9 2.9E-24 9.8E-29 225.6 20.8 211 203-420 26-245 (499)
22 3vfd_A Spastin; ATPase, microt 99.9 4E-24 1.4E-28 218.5 19.8 211 200-420 107-327 (389)
23 1ixz_A ATP-dependent metallopr 99.9 8.1E-24 2.8E-28 203.2 18.0 214 201-421 9-231 (254)
24 3d8b_A Fidgetin-like protein 1 99.9 9.2E-24 3.1E-28 213.5 18.3 210 201-420 77-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 2.4E-23 8.2E-28 204.2 18.2 210 201-420 14-234 (297)
26 3t15_A Ribulose bisphosphate c 99.9 1.5E-23 5E-28 206.5 12.8 164 236-407 30-214 (293)
27 1iy2_A ATP-dependent metallopr 99.9 9E-23 3.1E-27 198.8 18.2 213 202-421 34-255 (278)
28 1ypw_A Transitional endoplasmi 99.9 1.7E-25 5.8E-30 248.2 -7.1 214 202-421 471-693 (806)
29 1ypw_A Transitional endoplasmi 99.9 2.8E-21 9.7E-26 214.3 18.3 209 202-419 198-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 8.3E-19 2.8E-23 174.9 21.6 196 192-419 17-227 (338)
31 3u61_B DNA polymerase accessor 99.8 8.2E-19 2.8E-23 174.0 16.2 199 191-438 13-220 (324)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 6.8E-18 2.3E-22 166.9 20.8 192 201-420 5-212 (324)
33 2c9o_A RUVB-like 1; hexameric 99.8 1.3E-19 4.4E-24 189.0 6.7 166 204-379 33-226 (456)
34 3syl_A Protein CBBX; photosynt 99.8 5.9E-18 2E-22 166.3 16.4 176 209-401 32-228 (309)
35 1ofh_A ATP-dependent HSL prote 99.7 2.9E-17 9.8E-22 160.8 15.4 218 208-438 15-270 (310)
36 1g41_A Heat shock protein HSLU 99.7 7.4E-19 2.5E-23 181.4 3.8 163 208-386 15-188 (444)
37 2chg_A Replication factor C sm 99.7 8E-17 2.7E-21 148.6 17.0 153 201-391 10-175 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 7.9E-17 2.7E-21 156.0 16.0 167 208-388 33-210 (272)
39 1sxj_A Activator 1 95 kDa subu 99.7 2.4E-16 8.4E-21 166.6 18.8 173 191-392 26-224 (516)
40 1njg_A DNA polymerase III subu 99.7 6.1E-16 2.1E-20 144.2 19.0 155 201-392 16-200 (250)
41 3uk6_A RUVB-like 2; hexameric 99.7 5.7E-16 1.9E-20 155.9 18.9 185 202-419 37-303 (368)
42 3bos_A Putative DNA replicatio 99.7 3.1E-16 1.1E-20 147.2 13.7 202 201-448 21-231 (242)
43 3pvs_A Replication-associated 99.7 5.5E-16 1.9E-20 161.0 15.8 193 201-441 19-222 (447)
44 2chq_A Replication factor C sm 99.7 4.1E-16 1.4E-20 153.0 13.9 163 193-397 6-181 (319)
45 1jbk_A CLPB protein; beta barr 99.7 1.3E-16 4.4E-21 143.8 9.1 154 201-386 15-194 (195)
46 3m6a_A ATP-dependent protease 99.6 2E-15 6.9E-20 160.5 17.7 160 207-390 80-266 (543)
47 3hws_A ATP-dependent CLP prote 99.6 8.6E-17 3E-21 162.4 6.0 202 209-421 16-299 (363)
48 1iqp_A RFCS; clamp loader, ext 99.6 1.9E-15 6.3E-20 148.9 15.1 161 192-394 13-186 (327)
49 4fcw_A Chaperone protein CLPB; 99.6 5.1E-15 1.8E-19 145.3 17.9 160 208-391 17-230 (311)
50 1jr3_A DNA polymerase III subu 99.6 9.5E-15 3.2E-19 146.7 19.6 181 201-418 9-220 (373)
51 1sxj_B Activator 1 37 kDa subu 99.6 3.4E-15 1.2E-19 146.7 16.0 159 192-392 9-181 (323)
52 1sxj_D Activator 1 41 kDa subu 99.6 2.1E-15 7.3E-20 150.4 13.3 160 192-393 25-208 (353)
53 2v1u_A Cell division control p 99.6 6.4E-15 2.2E-19 148.1 15.8 160 206-391 17-215 (387)
54 2r44_A Uncharacterized protein 99.6 9.9E-15 3.4E-19 145.1 16.6 155 203-392 22-200 (331)
55 1um8_A ATP-dependent CLP prote 99.6 4.3E-14 1.5E-18 143.1 21.1 174 208-388 21-284 (376)
56 1l8q_A Chromosomal replication 99.6 4.4E-15 1.5E-19 147.3 13.4 167 201-397 4-186 (324)
57 3te6_A Regulatory protein SIR3 99.6 1.9E-14 6.5E-19 142.7 17.6 201 210-444 22-289 (318)
58 2qby_B CDC6 homolog 3, cell di 99.6 1.2E-14 4.1E-19 146.6 16.4 151 208-391 20-211 (384)
59 1sxj_E Activator 1 40 kDa subu 99.6 2.5E-14 8.4E-19 143.1 16.7 160 193-393 3-209 (354)
60 1g8p_A Magnesium-chelatase 38 99.6 2.9E-14 9.9E-19 142.1 16.5 155 201-390 17-232 (350)
61 1in4_A RUVB, holliday junction 99.6 1.3E-13 4.6E-18 137.6 21.1 191 201-419 18-223 (334)
62 2bjv_A PSP operon transcriptio 99.6 6.2E-14 2.1E-18 134.9 17.8 154 205-390 3-194 (265)
63 2p65_A Hypothetical protein PF 99.6 3.2E-15 1.1E-19 134.5 8.1 147 201-378 15-187 (187)
64 2z4s_A Chromosomal replication 99.6 2.6E-14 8.8E-19 148.2 15.9 161 201-391 98-277 (440)
65 1fnn_A CDC6P, cell division co 99.6 2.5E-13 8.6E-18 136.8 21.8 159 206-391 15-207 (389)
66 2qby_A CDC6 homolog 1, cell di 99.6 6.9E-14 2.3E-18 140.3 17.6 159 205-391 17-211 (386)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 2.4E-13 8.2E-18 149.9 20.9 155 208-391 458-667 (758)
68 3pxi_A Negative regulator of g 99.5 5.6E-14 1.9E-18 155.1 14.7 159 208-391 491-676 (758)
69 3pxg_A Negative regulator of g 99.5 9.4E-14 3.2E-18 145.1 15.7 148 201-392 173-340 (468)
70 1sxj_C Activator 1 40 kDa subu 99.5 8.1E-14 2.8E-18 139.2 14.1 158 192-391 13-183 (340)
71 1qvr_A CLPB protein; coiled co 99.5 1.8E-13 6.1E-18 153.0 18.0 158 202-391 164-346 (854)
72 3n70_A Transport activator; si 99.5 8.2E-14 2.8E-18 122.3 9.3 131 209-376 2-143 (145)
73 1r6b_X CLPA protein; AAA+, N-t 99.5 3.4E-13 1.2E-17 148.7 15.0 160 201-391 179-363 (758)
74 1a5t_A Delta prime, HOLB; zinc 99.4 1.9E-12 6.3E-17 129.3 17.9 146 242-416 24-202 (334)
75 1ojl_A Transcriptional regulat 99.4 3.2E-12 1.1E-16 126.0 17.7 153 208-391 2-191 (304)
76 3pxi_A Negative regulator of g 99.4 4.4E-13 1.5E-17 148.0 12.3 148 201-392 173-340 (758)
77 3co5_A Putative two-component 99.4 2.6E-13 9E-18 118.8 5.7 132 209-377 5-142 (143)
78 1qvr_A CLPB protein; coiled co 99.4 4.1E-12 1.4E-16 142.0 16.7 159 208-391 558-771 (854)
79 2gno_A DNA polymerase III, gam 99.4 2.5E-12 8.4E-17 127.0 13.3 121 243-390 19-152 (305)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.4E-11 4.6E-16 129.4 15.7 147 209-391 23-197 (500)
81 3ec2_A DNA replication protein 99.3 2.4E-12 8.2E-17 116.5 7.0 130 202-356 4-144 (180)
82 4akg_A Glutathione S-transfera 99.2 4.6E-11 1.6E-15 145.1 16.1 135 242-391 1267-1432(2695)
83 3f9v_A Minichromosome maintena 99.2 2.4E-12 8.3E-17 138.2 4.5 127 244-392 329-492 (595)
84 1w5s_A Origin recognition comp 99.2 1.2E-10 4.2E-15 118.1 15.3 164 206-391 20-229 (412)
85 2w58_A DNAI, primosome compone 99.2 3.9E-11 1.3E-15 110.3 8.8 97 203-305 20-127 (202)
86 2qgz_A Helicase loader, putati 99.0 2E-10 6.9E-15 113.4 6.6 97 203-305 119-226 (308)
87 1svm_A Large T antigen; AAA+ f 99.0 3.5E-10 1.2E-14 114.6 7.4 121 237-376 164-284 (377)
88 1tue_A Replication protein E1; 99.0 9E-10 3.1E-14 101.9 8.2 123 221-377 45-179 (212)
89 3k1j_A LON protease, ATP-depen 98.9 1.3E-08 4.4E-13 109.4 15.0 52 201-267 34-85 (604)
90 2kjq_A DNAA-related protein; s 98.9 2.4E-09 8.2E-14 94.4 7.2 100 242-370 36-141 (149)
91 2fna_A Conserved hypothetical 98.9 1.4E-07 4.6E-12 93.1 19.9 175 205-418 10-249 (357)
92 3cmw_A Protein RECA, recombina 98.8 2.1E-09 7.2E-14 125.8 7.1 147 205-355 1017-1218(1706)
93 2r2a_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 95.9 7.9 120 243-380 6-156 (199)
94 3vkg_A Dynein heavy chain, cyt 98.8 6.9E-08 2.3E-12 118.4 16.1 135 242-391 1304-1470(3245)
95 2qen_A Walker-type ATPase; unk 98.8 8.4E-07 2.9E-11 87.3 21.3 180 203-417 7-244 (350)
96 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.2E-09 1.4E-13 103.9 4.5 116 238-362 119-242 (331)
97 1ny5_A Transcriptional regulat 98.7 3.4E-07 1.2E-11 93.0 18.8 154 207-391 136-326 (387)
98 3dzd_A Transcriptional regulat 98.7 3.8E-07 1.3E-11 92.1 18.7 153 208-391 129-317 (368)
99 1u0j_A DNA replication protein 98.7 6.7E-08 2.3E-12 93.0 11.9 59 240-305 102-160 (267)
100 4akg_A Glutathione S-transfera 98.7 9E-08 3.1E-12 116.7 14.9 125 242-387 645-790 (2695)
101 3vkg_A Dynein heavy chain, cyt 98.4 1.2E-06 4.3E-11 107.6 12.1 129 242-391 604-754 (3245)
102 3f8t_A Predicted ATPase involv 98.3 5.3E-07 1.8E-11 93.0 6.6 141 210-381 215-385 (506)
103 3cmu_A Protein RECA, recombina 98.2 1.6E-06 5.4E-11 102.9 7.5 113 238-355 1423-1563(2050)
104 1jr3_D DNA polymerase III, del 98.2 1.1E-05 3.9E-10 79.9 12.5 125 242-394 18-159 (343)
105 1ye8_A Protein THEP1, hypothet 98.0 9.6E-06 3.3E-10 73.3 7.8 27 244-270 2-28 (178)
106 1z6t_A APAF-1, apoptotic prote 98.0 0.00015 5E-09 77.0 17.9 166 204-415 120-324 (591)
107 3sfz_A APAF-1, apoptotic pepti 98.0 0.00019 6.4E-09 82.2 19.1 164 203-412 119-321 (1249)
108 3upu_A ATP-dependent DNA helic 97.9 7E-05 2.4E-09 77.5 11.6 68 192-276 12-83 (459)
109 2cvh_A DNA repair and recombin 97.8 0.00011 3.7E-09 67.3 11.1 40 238-277 16-55 (220)
110 3trf_A Shikimate kinase, SK; a 97.7 2E-05 7E-10 70.6 3.8 33 242-274 5-37 (185)
111 1n0w_A DNA repair protein RAD5 97.7 0.00012 4.2E-09 68.0 9.1 40 238-277 20-68 (243)
112 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00023 8E-09 65.4 10.4 37 238-274 19-58 (235)
113 1qhx_A CPT, protein (chloramph 97.6 4E-05 1.4E-09 68.1 4.9 34 243-276 4-37 (178)
114 2rhm_A Putative kinase; P-loop 97.6 2.9E-05 1E-09 69.7 3.6 34 240-273 3-36 (193)
115 3vaa_A Shikimate kinase, SK; s 97.6 3.5E-05 1.2E-09 70.3 3.9 33 242-274 25-57 (199)
116 2orw_A Thymidine kinase; TMTK, 97.6 6.1E-05 2.1E-09 68.3 5.4 63 243-305 4-88 (184)
117 3hr8_A Protein RECA; alpha and 97.5 0.00027 9.3E-09 70.7 9.9 70 238-307 57-153 (356)
118 3kb2_A SPBC2 prophage-derived 97.5 5.5E-05 1.9E-09 66.5 4.0 31 244-274 3-33 (173)
119 2iyv_A Shikimate kinase, SK; t 97.5 5E-05 1.7E-09 68.0 3.6 32 243-274 3-34 (184)
120 2z43_A DNA repair and recombin 97.5 8E-05 2.7E-09 73.5 5.3 40 238-277 103-151 (324)
121 1via_A Shikimate kinase; struc 97.5 5E-05 1.7E-09 67.5 3.4 31 244-274 6-36 (175)
122 3iij_A Coilin-interacting nucl 97.5 5.4E-05 1.8E-09 67.6 3.6 33 242-274 11-43 (180)
123 1zuh_A Shikimate kinase; alpha 97.5 5.8E-05 2E-09 66.6 3.6 32 243-274 8-39 (168)
124 2ehv_A Hypothetical protein PH 97.5 0.00027 9.4E-09 65.9 8.3 26 238-263 26-51 (251)
125 1y63_A LMAJ004144AAA protein; 97.5 6.5E-05 2.2E-09 67.6 3.7 33 242-274 10-43 (184)
126 1kag_A SKI, shikimate kinase I 97.4 6.7E-05 2.3E-09 66.2 3.7 31 243-273 5-35 (173)
127 3e1s_A Exodeoxyribonuclease V, 97.4 0.00038 1.3E-08 74.1 9.8 63 243-305 205-291 (574)
128 1v5w_A DMC1, meiotic recombina 97.4 0.00035 1.2E-08 69.5 8.8 40 238-277 118-166 (343)
129 1pzn_A RAD51, DNA repair and r 97.4 0.00023 7.9E-09 71.1 7.5 29 238-266 127-155 (349)
130 1xp8_A RECA protein, recombina 97.4 0.0007 2.4E-08 68.0 10.7 69 238-306 70-165 (366)
131 2r8r_A Sensor protein; KDPD, P 97.4 0.00062 2.1E-08 63.7 9.4 34 243-276 7-43 (228)
132 1e6c_A Shikimate kinase; phosp 97.4 8.5E-05 2.9E-09 65.5 3.4 32 243-274 3-34 (173)
133 2ze6_A Isopentenyl transferase 97.4 0.0001 3.4E-09 70.2 4.1 32 244-275 3-34 (253)
134 3cmu_A Protein RECA, recombina 97.4 0.00019 6.4E-09 85.6 7.0 70 238-307 1077-1173(2050)
135 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.3E-09 66.4 4.3 32 243-274 21-52 (201)
136 1tev_A UMP-CMP kinase; ploop, 97.3 0.0001 3.6E-09 66.0 3.7 31 243-273 4-34 (196)
137 3lw7_A Adenylate kinase relate 97.3 0.00011 3.6E-09 64.4 3.6 29 244-273 3-31 (179)
138 1qf9_A UMP/CMP kinase, protein 97.3 0.00011 3.8E-09 65.6 3.6 33 242-274 6-38 (194)
139 1gvn_B Zeta; postsegregational 97.3 0.00031 1.1E-08 68.2 6.7 34 242-275 33-66 (287)
140 1nlf_A Regulatory protein REPA 97.3 0.0005 1.7E-08 66.0 8.1 29 238-266 26-54 (279)
141 2a5y_B CED-4; apoptosis; HET: 97.3 0.0051 1.7E-07 64.9 16.5 161 211-415 131-333 (549)
142 1ly1_A Polynucleotide kinase; 97.3 8.6E-05 2.9E-09 65.7 2.4 30 243-272 3-33 (181)
143 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.3E-09 65.7 3.5 32 243-274 10-41 (196)
144 3t61_A Gluconokinase; PSI-biol 97.3 0.00016 5.6E-09 65.7 4.3 32 243-274 19-50 (202)
145 2zr9_A Protein RECA, recombina 97.3 0.00043 1.5E-08 69.1 7.7 69 238-306 57-152 (349)
146 2pt5_A Shikimate kinase, SK; a 97.3 0.00013 4.4E-09 64.1 3.4 31 244-274 2-32 (168)
147 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00011 3.7E-09 73.4 3.2 52 212-272 3-54 (359)
148 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.7E-09 65.7 2.9 31 243-273 5-35 (186)
149 1kht_A Adenylate kinase; phosp 97.3 0.00012 4.2E-09 65.3 3.1 30 243-272 4-38 (192)
150 3be4_A Adenylate kinase; malar 97.3 0.00013 4.4E-09 67.5 3.3 31 243-273 6-36 (217)
151 2bwj_A Adenylate kinase 5; pho 97.2 0.00013 4.6E-09 65.6 3.3 33 242-274 12-44 (199)
152 1u94_A RECA protein, recombina 97.2 0.00045 1.5E-08 69.2 7.4 69 238-306 59-154 (356)
153 1zp6_A Hypothetical protein AT 97.2 0.00014 4.7E-09 65.3 3.1 35 241-275 8-42 (191)
154 3dl0_A Adenylate kinase; phosp 97.2 0.00015 5.2E-09 66.6 3.5 29 245-273 3-31 (216)
155 1zd8_A GTP:AMP phosphotransfer 97.2 0.00015 5.2E-09 67.3 3.3 32 242-273 7-38 (227)
156 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.7E-09 66.2 3.4 29 245-273 3-31 (216)
157 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.5E-09 66.3 3.8 31 243-273 5-35 (220)
158 2i1q_A DNA repair and recombin 97.2 0.00034 1.2E-08 68.7 5.8 28 238-265 94-121 (322)
159 3io5_A Recombination and repai 97.2 0.00093 3.2E-08 65.7 8.8 69 238-307 25-125 (333)
160 1knq_A Gluconate kinase; ALFA/ 97.2 0.00023 7.9E-09 63.0 4.2 31 243-273 9-39 (175)
161 2p5t_B PEZT; postsegregational 97.2 0.00037 1.3E-08 66.1 5.7 37 242-278 32-68 (253)
162 3lda_A DNA repair protein RAD5 97.2 0.00082 2.8E-08 68.3 8.5 40 238-277 174-222 (400)
163 1ukz_A Uridylate kinase; trans 97.1 0.00024 8.1E-09 64.5 3.9 32 243-274 16-47 (203)
164 1ak2_A Adenylate kinase isoenz 97.1 0.00023 8E-09 66.4 3.8 31 243-273 17-47 (233)
165 2pez_A Bifunctional 3'-phospho 97.1 0.00036 1.2E-08 62.1 4.9 34 242-275 5-41 (179)
166 2vli_A Antibiotic resistance p 97.1 0.0002 6.9E-09 63.6 3.2 29 243-271 6-34 (183)
167 2zts_A Putative uncharacterize 97.1 0.0012 4.1E-08 61.3 8.5 39 238-276 26-68 (251)
168 3crm_A TRNA delta(2)-isopenten 97.1 0.0003 1E-08 69.4 4.4 34 242-275 5-38 (323)
169 1zak_A Adenylate kinase; ATP:A 97.1 0.00016 5.4E-09 66.9 2.2 32 242-273 5-36 (222)
170 4eun_A Thermoresistant glucoki 97.1 0.00039 1.3E-08 63.3 4.6 31 242-272 29-59 (200)
171 2pbr_A DTMP kinase, thymidylat 97.1 0.0004 1.4E-08 62.1 4.5 32 244-275 2-36 (195)
172 3tlx_A Adenylate kinase 2; str 97.0 0.00037 1.3E-08 65.8 4.0 33 242-274 29-61 (243)
173 1e4v_A Adenylate kinase; trans 97.0 0.00027 9.2E-09 65.0 2.9 29 245-273 3-31 (214)
174 3umf_A Adenylate kinase; rossm 97.0 0.00047 1.6E-08 64.2 4.6 31 242-272 29-59 (217)
175 1g5t_A COB(I)alamin adenosyltr 97.0 0.0021 7.3E-08 58.7 8.8 110 243-376 29-179 (196)
176 2b8t_A Thymidine kinase; deoxy 97.0 0.0021 7.2E-08 60.0 8.8 63 243-305 13-101 (223)
177 2xb4_A Adenylate kinase; ATP-b 97.0 0.00037 1.3E-08 64.7 3.4 30 244-273 2-31 (223)
178 1vt4_I APAF-1 related killer D 96.9 0.0058 2E-07 68.8 13.0 55 211-277 131-191 (1221)
179 2if2_A Dephospho-COA kinase; a 96.9 0.00036 1.2E-08 63.3 2.9 30 244-274 3-32 (204)
180 2jaq_A Deoxyguanosine kinase; 96.9 0.00053 1.8E-08 61.8 3.9 29 244-272 2-30 (205)
181 3sr0_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 63.1 4.1 28 245-272 3-30 (206)
182 1cke_A CK, MSSA, protein (cyti 96.9 0.00066 2.3E-08 62.5 4.5 31 243-273 6-36 (227)
183 2bbw_A Adenylate kinase 4, AK4 96.9 0.00059 2E-08 64.1 4.2 31 242-272 27-57 (246)
184 2v54_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 61.5 4.1 34 243-276 5-39 (204)
185 2plr_A DTMP kinase, probable t 96.9 0.0011 3.8E-08 60.0 5.9 31 243-273 5-37 (213)
186 3nwj_A ATSK2; P loop, shikimat 96.9 0.0005 1.7E-08 65.4 3.6 32 243-274 49-80 (250)
187 3ake_A Cytidylate kinase; CMP 96.9 0.00058 2E-08 61.8 3.9 31 244-274 4-34 (208)
188 2z0h_A DTMP kinase, thymidylat 96.9 0.00075 2.6E-08 60.5 4.5 31 245-275 3-36 (197)
189 1nks_A Adenylate kinase; therm 96.8 0.0004 1.4E-08 61.9 2.4 24 244-267 3-26 (194)
190 1jjv_A Dephospho-COA kinase; P 96.8 0.00049 1.7E-08 62.6 2.9 30 244-274 4-33 (206)
191 2grj_A Dephospho-COA kinase; T 96.8 0.0006 2E-08 62.2 3.4 32 243-274 13-44 (192)
192 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.5E-08 60.4 4.9 33 242-274 25-60 (200)
193 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00067 2.3E-08 64.6 3.7 33 243-275 5-40 (260)
194 3r20_A Cytidylate kinase; stru 96.8 0.00098 3.3E-08 62.7 4.5 32 243-274 10-41 (233)
195 1uf9_A TT1252 protein; P-loop, 96.7 0.00082 2.8E-08 60.6 3.2 31 243-274 9-39 (203)
196 4b3f_X DNA-binding protein smu 96.7 0.0026 9E-08 68.5 7.7 60 204-278 182-244 (646)
197 4a74_A DNA repair and recombin 96.7 0.0019 6.4E-08 59.3 5.7 29 238-266 21-49 (231)
198 2c9o_A RUVB-like 1; hexameric 96.6 0.014 4.6E-07 60.2 12.5 72 294-391 296-380 (456)
199 2wwf_A Thymidilate kinase, put 96.6 0.00043 1.5E-08 63.0 1.0 28 243-270 11-38 (212)
200 2px0_A Flagellar biosynthesis 96.6 0.012 4E-07 57.3 11.2 61 215-277 80-144 (296)
201 2h92_A Cytidylate kinase; ross 96.6 0.0012 4E-08 60.6 3.7 32 243-274 4-35 (219)
202 1kgd_A CASK, peripheral plasma 96.6 0.0012 4.3E-08 58.9 3.8 26 242-267 5-30 (180)
203 3a8t_A Adenylate isopentenyltr 96.6 0.00099 3.4E-08 66.0 3.3 36 243-278 41-76 (339)
204 1vht_A Dephospho-COA kinase; s 96.6 0.0012 4.1E-08 60.6 3.6 31 243-274 5-35 (218)
205 3cmw_A Protein RECA, recombina 96.6 0.0024 8.1E-08 75.3 6.8 70 238-307 30-126 (1706)
206 4e22_A Cytidylate kinase; P-lo 96.6 0.0018 6.1E-08 61.3 4.8 30 243-272 28-57 (252)
207 1ltq_A Polynucleotide kinase; 96.5 0.00093 3.2E-08 64.5 2.7 31 243-273 3-34 (301)
208 3foz_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 63.7 4.4 35 242-276 10-44 (316)
209 2qor_A Guanylate kinase; phosp 96.5 0.0015 5E-08 59.6 3.8 28 240-267 10-37 (204)
210 1q3t_A Cytidylate kinase; nucl 96.5 0.0015 5.3E-08 60.9 4.0 33 242-274 16-48 (236)
211 1w4r_A Thymidine kinase; type 96.5 0.0091 3.1E-07 54.4 8.8 32 243-274 21-55 (195)
212 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.8E-08 58.1 3.9 26 243-268 3-28 (189)
213 2qt1_A Nicotinamide riboside k 96.5 0.0011 3.7E-08 60.4 2.6 32 243-274 22-54 (207)
214 2yvu_A Probable adenylyl-sulfa 96.5 0.0027 9.2E-08 56.7 5.1 33 242-274 13-48 (186)
215 2iut_A DNA translocase FTSK; n 96.4 0.018 6.2E-07 60.8 12.1 74 295-387 345-420 (574)
216 1uj2_A Uridine-cytidine kinase 96.4 0.0015 5.3E-08 61.6 3.6 27 243-269 23-49 (252)
217 2dr3_A UPF0273 protein PH0284; 96.4 0.0021 7E-08 59.6 4.4 39 238-276 19-60 (247)
218 1nn5_A Similar to deoxythymidy 96.4 0.00068 2.3E-08 61.7 1.0 25 243-267 10-34 (215)
219 2qmh_A HPR kinase/phosphorylas 96.4 0.0015 5E-08 60.0 3.2 33 242-275 34-66 (205)
220 2j41_A Guanylate kinase; GMP, 96.3 0.0019 6.4E-08 58.4 3.4 25 242-266 6-30 (207)
221 1rz3_A Hypothetical protein rb 96.3 0.0061 2.1E-07 55.3 6.9 35 243-277 23-60 (201)
222 2v3c_C SRP54, signal recogniti 96.3 0.0069 2.3E-07 62.1 8.0 64 242-305 99-192 (432)
223 3c8u_A Fructokinase; YP_612366 96.3 0.0039 1.3E-07 56.9 5.5 26 242-267 22-47 (208)
224 3d3q_A TRNA delta(2)-isopenten 96.3 0.0019 6.5E-08 64.1 3.6 33 243-275 8-40 (340)
225 2fz4_A DNA repair protein RAD2 96.3 0.0074 2.5E-07 56.5 7.5 32 244-275 110-141 (237)
226 1z0j_A RAB-22, RAS-related pro 96.3 0.0093 3.2E-07 51.3 7.5 24 243-266 7-30 (170)
227 1kao_A RAP2A; GTP-binding prot 96.3 0.014 4.8E-07 49.8 8.5 23 243-265 4-26 (167)
228 3tau_A Guanylate kinase, GMP k 96.3 0.0022 7.5E-08 58.7 3.4 27 242-268 8-34 (208)
229 1m7g_A Adenylylsulfate kinase; 96.3 0.0029 9.8E-08 57.9 4.2 33 242-274 25-61 (211)
230 3zvl_A Bifunctional polynucleo 96.2 0.0015 5.1E-08 66.7 2.4 32 242-273 258-289 (416)
231 2f6r_A COA synthase, bifunctio 96.2 0.0021 7.3E-08 61.9 3.2 31 243-274 76-106 (281)
232 3exa_A TRNA delta(2)-isopenten 96.2 0.0026 9E-08 62.4 3.7 34 243-276 4-37 (322)
233 1ex7_A Guanylate kinase; subst 96.2 0.0032 1.1E-07 57.1 3.8 26 243-268 2-27 (186)
234 3tr0_A Guanylate kinase, GMP k 96.2 0.0031 1.1E-07 56.9 3.8 25 243-267 8-32 (205)
235 3kl4_A SRP54, signal recogniti 96.2 0.0065 2.2E-07 62.3 6.6 62 214-276 69-134 (433)
236 3fdi_A Uncharacterized protein 96.1 0.0029 9.9E-08 57.9 3.5 30 243-272 7-36 (201)
237 1qde_A EIF4A, translation init 96.1 0.025 8.5E-07 51.6 9.8 57 205-264 14-74 (224)
238 1ek0_A Protein (GTP-binding pr 96.1 0.012 4E-07 50.6 7.0 24 243-266 4-27 (170)
239 3a00_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 56.4 3.3 25 243-267 2-26 (186)
240 2efe_B Small GTP-binding prote 96.0 0.019 6.6E-07 49.9 8.2 23 243-265 13-35 (181)
241 3dm5_A SRP54, signal recogniti 96.0 0.0083 2.8E-07 61.6 6.5 64 214-278 73-139 (443)
242 2ce2_X GTPase HRAS; signaling 96.0 0.018 6E-07 49.0 7.7 23 244-266 5-27 (166)
243 3b9q_A Chloroplast SRP recepto 96.0 0.0067 2.3E-07 59.1 5.4 53 214-266 70-124 (302)
244 2ius_A DNA translocase FTSK; n 96.0 0.027 9.2E-07 58.9 10.3 41 345-387 332-374 (512)
245 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 56.9 3.2 26 242-267 4-29 (198)
246 3bc1_A RAS-related protein RAB 95.9 0.024 8.2E-07 49.7 8.6 23 243-265 12-34 (195)
247 3tkl_A RAS-related protein RAB 95.9 0.021 7.1E-07 50.5 8.2 24 243-266 17-40 (196)
248 3asz_A Uridine kinase; cytidin 95.9 0.0032 1.1E-07 57.3 2.7 30 243-272 7-38 (211)
249 1nrj_B SR-beta, signal recogni 95.9 0.019 6.5E-07 52.0 7.9 25 242-266 12-36 (218)
250 1vma_A Cell division protein F 95.9 0.01 3.5E-07 58.0 6.5 60 216-276 79-141 (306)
251 3t1o_A Gliding protein MGLA; G 95.9 0.031 1.1E-06 49.2 9.2 24 243-266 15-38 (198)
252 1vec_A ATP-dependent RNA helic 95.9 0.04 1.4E-06 49.4 10.0 51 206-259 4-57 (206)
253 1r2q_A RAS-related protein RAB 95.9 0.016 5.6E-07 49.6 7.0 23 243-265 7-29 (170)
254 4dsu_A GTPase KRAS, isoform 2B 95.8 0.021 7.1E-07 50.0 7.7 24 243-266 5-28 (189)
255 1r8s_A ADP-ribosylation factor 95.8 0.022 7.5E-07 48.7 7.6 22 244-265 2-23 (164)
256 2oil_A CATX-8, RAS-related pro 95.8 0.018 6.1E-07 51.0 7.2 23 243-265 26-48 (193)
257 2v9p_A Replication protein E1; 95.8 0.0053 1.8E-07 60.0 3.9 33 238-270 122-154 (305)
258 1htw_A HI0065; nucleotide-bind 95.8 0.0063 2.1E-07 53.5 4.0 25 242-266 33-57 (158)
259 1c1y_A RAS-related protein RAP 95.8 0.026 8.9E-07 48.2 8.0 22 244-265 5-26 (167)
260 1g41_A Heat shock protein HSLU 95.8 0.04 1.4E-06 56.6 10.5 94 286-387 243-346 (444)
261 1u8z_A RAS-related protein RAL 95.8 0.021 7.1E-07 48.7 7.3 23 243-265 5-27 (168)
262 3eph_A TRNA isopentenyltransfe 95.8 0.005 1.7E-07 62.4 3.6 33 243-275 3-35 (409)
263 1z0f_A RAB14, member RAS oncog 95.7 0.024 8.1E-07 49.1 7.6 24 243-266 16-39 (179)
264 1znw_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 55.7 3.6 26 242-267 20-45 (207)
265 1z6g_A Guanylate kinase; struc 95.7 0.0055 1.9E-07 56.6 3.5 25 242-266 23-47 (218)
266 1cr0_A DNA primase/helicase; R 95.7 0.005 1.7E-07 59.3 3.3 36 238-273 31-70 (296)
267 3ney_A 55 kDa erythrocyte memb 95.7 0.0058 2E-07 55.9 3.6 26 242-267 19-44 (197)
268 2og2_A Putative signal recogni 95.7 0.0094 3.2E-07 59.6 5.4 53 214-266 127-181 (359)
269 1x6v_B Bifunctional 3'-phospho 95.7 0.0078 2.7E-07 64.5 5.0 34 242-275 52-88 (630)
270 1x3s_A RAS-related protein RAB 95.7 0.032 1.1E-06 49.1 8.4 23 243-265 16-38 (195)
271 3thx_B DNA mismatch repair pro 95.7 0.011 3.9E-07 65.9 6.4 24 241-264 672-695 (918)
272 3con_A GTPase NRAS; structural 95.7 0.025 8.5E-07 49.9 7.5 24 243-266 22-45 (190)
273 1hv8_A Putative ATP-dependent 95.7 0.046 1.6E-06 53.1 10.1 58 205-265 6-67 (367)
274 2a9k_A RAS-related protein RAL 95.7 0.027 9.2E-07 49.1 7.7 23 243-265 19-41 (187)
275 3gmt_A Adenylate kinase; ssgci 95.7 0.0056 1.9E-07 57.4 3.2 29 245-273 11-39 (230)
276 3q72_A GTP-binding protein RAD 95.6 0.011 3.8E-07 50.7 5.0 21 244-264 4-24 (166)
277 2xau_A PRE-mRNA-splicing facto 95.6 0.031 1.1E-06 61.4 9.6 59 205-265 72-132 (773)
278 1wb9_A DNA mismatch repair pro 95.6 0.024 8.3E-07 62.5 8.7 24 242-265 607-630 (800)
279 2eyu_A Twitching motility prot 95.6 0.0075 2.6E-07 57.5 4.1 25 242-266 25-49 (261)
280 1s96_A Guanylate kinase, GMP k 95.6 0.007 2.4E-07 56.1 3.7 29 239-267 13-41 (219)
281 3bh0_A DNAB-like replicative h 95.6 0.011 3.9E-07 57.7 5.3 38 238-275 64-104 (315)
282 1gtv_A TMK, thymidylate kinase 95.6 0.0025 8.6E-08 57.9 0.5 25 244-268 2-26 (214)
283 2bov_A RAla, RAS-related prote 95.6 0.032 1.1E-06 49.7 7.9 23 243-265 15-37 (206)
284 3thx_A DNA mismatch repair pro 95.6 0.023 8E-07 63.6 8.3 23 242-264 662-684 (934)
285 3clv_A RAB5 protein, putative; 95.5 0.035 1.2E-06 48.9 8.0 23 243-265 8-30 (208)
286 1zu4_A FTSY; GTPase, signal re 95.5 0.016 5.5E-07 56.9 6.2 36 242-277 105-143 (320)
287 2yhs_A FTSY, cell division pro 95.5 0.01 3.6E-07 61.6 5.0 25 242-266 293-317 (503)
288 3lxx_A GTPase IMAP family memb 95.5 0.038 1.3E-06 51.2 8.4 24 243-266 30-53 (239)
289 1zd9_A ADP-ribosylation factor 95.5 0.047 1.6E-06 48.2 8.6 23 243-265 23-45 (188)
290 4eaq_A DTMP kinase, thymidylat 95.5 0.0091 3.1E-07 55.7 4.0 31 243-273 27-59 (229)
291 2gk6_A Regulator of nonsense t 95.5 0.011 3.8E-07 63.4 5.2 24 243-266 196-219 (624)
292 1p9r_A General secretion pathw 95.4 0.02 6.8E-07 58.4 6.7 56 204-273 143-201 (418)
293 3hdt_A Putative kinase; struct 95.4 0.0076 2.6E-07 56.2 3.3 31 243-273 15-45 (223)
294 2nzj_A GTP-binding protein REM 95.4 0.013 4.5E-07 50.6 4.6 23 243-265 5-27 (175)
295 1c9k_A COBU, adenosylcobinamid 95.4 0.0075 2.6E-07 54.3 3.0 33 245-278 2-34 (180)
296 4gp7_A Metallophosphoesterase; 95.4 0.0074 2.5E-07 53.3 3.0 21 242-262 9-29 (171)
297 2erx_A GTP-binding protein DI- 95.4 0.017 5.9E-07 49.5 5.3 21 244-264 5-25 (172)
298 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.02 6.8E-07 49.6 5.7 23 243-265 8-30 (177)
299 1z2a_A RAS-related protein RAB 95.4 0.013 4.5E-07 50.2 4.5 23 243-265 6-28 (168)
300 3tqf_A HPR(Ser) kinase; transf 95.4 0.0099 3.4E-07 53.2 3.6 29 242-271 16-44 (181)
301 3kkq_A RAS-related protein M-R 95.4 0.028 9.5E-07 49.1 6.6 23 243-265 19-41 (183)
302 2atv_A RERG, RAS-like estrogen 95.3 0.043 1.5E-06 48.7 7.9 24 242-265 28-51 (196)
303 2ewv_A Twitching motility prot 95.3 0.0093 3.2E-07 59.9 3.7 26 241-266 135-160 (372)
304 2hxs_A RAB-26, RAS-related pro 95.3 0.028 9.7E-07 48.7 6.5 23 243-265 7-29 (178)
305 3e70_C DPA, signal recognition 95.3 0.024 8.2E-07 55.9 6.6 26 241-266 128-153 (328)
306 3dz8_A RAS-related protein RAB 95.3 0.023 8E-07 50.3 6.0 24 243-266 24-47 (191)
307 3jvv_A Twitching mobility prot 95.3 0.0091 3.1E-07 59.6 3.5 24 243-266 124-147 (356)
308 1zbd_A Rabphilin-3A; G protein 95.3 0.037 1.3E-06 49.4 7.2 23 243-265 9-31 (203)
309 1upt_A ARL1, ADP-ribosylation 95.3 0.02 6.8E-07 49.2 5.3 23 243-265 8-30 (171)
310 1np6_A Molybdopterin-guanine d 95.2 0.011 3.8E-07 52.8 3.6 26 241-266 5-30 (174)
311 2i3b_A HCR-ntpase, human cance 95.2 0.0092 3.1E-07 54.1 3.1 23 244-266 3-25 (189)
312 3oes_A GTPase rhebl1; small GT 95.2 0.033 1.1E-06 49.8 6.8 24 243-266 25-48 (201)
313 2jeo_A Uridine-cytidine kinase 95.2 0.011 3.9E-07 55.3 3.7 26 244-269 27-52 (245)
314 1z06_A RAS-related protein RAB 95.2 0.052 1.8E-06 47.8 7.9 23 243-265 21-43 (189)
315 2fg5_A RAB-22B, RAS-related pr 95.2 0.036 1.2E-06 49.2 6.8 23 243-265 24-46 (192)
316 1xx6_A Thymidine kinase; NESG, 95.1 0.033 1.1E-06 50.5 6.5 31 243-273 9-42 (191)
317 3tqc_A Pantothenate kinase; bi 95.1 0.025 8.4E-07 55.6 6.0 24 244-267 94-117 (321)
318 2axn_A 6-phosphofructo-2-kinas 95.1 0.012 4E-07 61.9 3.9 26 242-267 35-60 (520)
319 2gf9_A RAS-related protein RAB 95.1 0.031 1.1E-06 49.3 6.2 24 243-266 23-46 (189)
320 1zj6_A ADP-ribosylation factor 95.1 0.085 2.9E-06 46.3 9.0 23 242-264 16-38 (187)
321 1a7j_A Phosphoribulokinase; tr 95.1 0.0046 1.6E-07 59.9 0.6 37 243-279 6-45 (290)
322 2h57_A ADP-ribosylation factor 95.1 0.015 5.1E-07 51.5 4.0 24 243-266 22-45 (190)
323 2b6h_A ADP-ribosylation factor 95.1 0.066 2.2E-06 47.6 8.2 23 242-264 29-51 (192)
324 2r6a_A DNAB helicase, replicat 95.1 0.02 6.7E-07 58.9 5.3 38 238-275 199-240 (454)
325 3lnc_A Guanylate kinase, GMP k 95.0 0.0067 2.3E-07 56.2 1.6 26 242-267 27-53 (231)
326 2hup_A RAS-related protein RAB 95.0 0.051 1.8E-06 48.7 7.5 23 243-265 30-52 (201)
327 2oap_1 GSPE-2, type II secreti 95.0 0.0074 2.5E-07 63.2 2.0 62 242-303 260-343 (511)
328 2y8e_A RAB-protein 6, GH09086P 95.0 0.023 7.8E-07 49.2 4.8 23 243-265 15-37 (179)
329 1sq5_A Pantothenate kinase; P- 95.0 0.026 8.7E-07 54.9 5.6 25 243-267 81-105 (308)
330 1odf_A YGR205W, hypothetical 3 95.0 0.015 5.3E-07 56.2 4.0 27 242-268 31-57 (290)
331 2wjy_A Regulator of nonsense t 95.0 0.019 6.5E-07 63.4 5.2 24 243-266 372-395 (800)
332 1m2o_B GTP-binding protein SAR 94.9 0.071 2.4E-06 47.3 8.1 22 243-264 24-45 (190)
333 4f4c_A Multidrug resistance pr 94.9 0.017 5.8E-07 67.3 4.9 27 241-267 443-469 (1321)
334 2bcg_Y Protein YP2, GTP-bindin 94.9 0.033 1.1E-06 49.9 5.9 23 243-265 9-31 (206)
335 2g6b_A RAS-related protein RAB 94.9 0.063 2.1E-06 46.5 7.6 23 243-265 11-33 (180)
336 2j37_W Signal recognition part 94.9 0.03 1E-06 58.5 6.3 61 215-276 74-138 (504)
337 2bme_A RAB4A, RAS-related prot 94.9 0.025 8.4E-07 49.6 4.9 23 243-265 11-33 (186)
338 2q6t_A DNAB replication FORK h 94.9 0.021 7.1E-07 58.6 4.9 38 238-275 196-237 (444)
339 2ged_A SR-beta, signal recogni 94.9 0.028 9.6E-07 49.7 5.2 25 242-266 48-72 (193)
340 2fn4_A P23, RAS-related protei 94.8 0.022 7.5E-07 49.4 4.3 23 243-265 10-32 (181)
341 2xxa_A Signal recognition part 94.8 0.032 1.1E-06 57.1 6.1 62 216-278 74-140 (433)
342 3pey_A ATP-dependent RNA helic 94.8 0.22 7.5E-06 48.8 12.1 53 205-260 5-62 (395)
343 2a5j_A RAS-related protein RAB 94.8 0.039 1.3E-06 48.9 5.9 23 243-265 22-44 (191)
344 4i1u_A Dephospho-COA kinase; s 94.8 0.017 5.8E-07 53.3 3.6 31 244-275 11-41 (210)
345 1g8f_A Sulfate adenylyltransfe 94.8 0.032 1.1E-06 58.3 6.0 26 243-268 396-421 (511)
346 2p5s_A RAS and EF-hand domain 94.8 0.035 1.2E-06 49.6 5.6 23 243-265 29-51 (199)
347 2h17_A ADP-ribosylation factor 94.8 0.075 2.5E-06 46.5 7.7 23 243-265 22-44 (181)
348 1xjc_A MOBB protein homolog; s 94.8 0.029 1E-06 49.9 5.0 32 243-274 5-39 (169)
349 1rj9_A FTSY, signal recognitio 94.8 0.018 6.3E-07 56.1 3.9 25 242-266 102-126 (304)
350 3tw8_B RAS-related protein RAB 94.7 0.027 9.4E-07 48.8 4.7 23 243-265 10-32 (181)
351 3fe2_A Probable ATP-dependent 94.7 0.094 3.2E-06 48.5 8.6 52 205-259 29-83 (242)
352 3t5g_A GTP-binding protein RHE 94.7 0.035 1.2E-06 48.4 5.2 23 243-265 7-29 (181)
353 2f7s_A C25KG, RAS-related prot 94.7 0.062 2.1E-06 48.5 7.1 23 243-265 26-48 (217)
354 3aez_A Pantothenate kinase; tr 94.7 0.018 6.3E-07 56.3 3.7 26 242-267 90-115 (312)
355 1fzq_A ADP-ribosylation factor 94.7 0.046 1.6E-06 48.1 6.1 23 243-265 17-39 (181)
356 1m8p_A Sulfate adenylyltransfe 94.7 0.018 6.2E-07 61.1 3.9 33 243-275 397-433 (573)
357 3cph_A RAS-related protein SEC 94.7 0.064 2.2E-06 48.0 7.1 23 243-265 21-43 (213)
358 2fu5_C RAS-related protein RAB 94.7 0.029 9.8E-07 49.1 4.6 23 243-265 9-31 (183)
359 3kta_A Chromosome segregation 94.6 0.015 5.3E-07 51.3 2.9 24 244-267 28-51 (182)
360 1mh1_A RAC1; GTP-binding, GTPa 94.6 0.028 9.5E-07 49.1 4.4 23 243-265 6-28 (186)
361 2ew1_A RAS-related protein RAB 94.6 0.039 1.3E-06 49.8 5.5 23 243-265 27-49 (201)
362 2ffh_A Protein (FFH); SRP54, s 94.6 0.056 1.9E-06 55.1 7.3 60 215-276 73-135 (425)
363 1ewq_A DNA mismatch repair pro 94.6 0.055 1.9E-06 59.3 7.6 25 242-266 576-600 (765)
364 1m7b_A RND3/RHOE small GTP-bin 94.6 0.023 7.9E-07 50.0 3.9 23 243-265 8-30 (184)
365 2j9r_A Thymidine kinase; TK1, 94.6 0.091 3.1E-06 48.5 7.9 31 244-274 30-63 (214)
366 3llu_A RAS-related GTP-binding 94.5 0.076 2.6E-06 47.3 7.3 24 243-266 21-44 (196)
367 4a1f_A DNAB helicase, replicat 94.5 0.029 9.8E-07 55.6 4.8 38 238-275 42-82 (338)
368 2gf0_A GTP-binding protein DI- 94.5 0.036 1.2E-06 49.1 5.0 23 243-265 9-31 (199)
369 2ocp_A DGK, deoxyguanosine kin 94.5 0.021 7.3E-07 53.1 3.6 25 243-267 3-27 (241)
370 1j8m_F SRP54, signal recogniti 94.5 0.042 1.4E-06 53.3 5.9 61 215-278 71-137 (297)
371 1p5z_B DCK, deoxycytidine kina 94.5 0.0089 3E-07 56.6 1.0 29 243-271 25-54 (263)
372 2fh5_B SR-beta, signal recogni 94.5 0.04 1.4E-06 49.6 5.3 24 243-266 8-31 (214)
373 3tif_A Uncharacterized ABC tra 94.4 0.013 4.6E-07 54.8 2.0 26 242-267 31-56 (235)
374 2xzl_A ATP-dependent helicase 94.4 0.026 8.8E-07 62.3 4.6 34 243-276 376-413 (802)
375 4dkx_A RAS-related protein RAB 94.4 0.085 2.9E-06 48.5 7.5 21 244-264 15-35 (216)
376 2cbz_A Multidrug resistance-as 94.4 0.014 4.6E-07 54.8 2.0 25 242-266 31-55 (237)
377 3bwd_D RAC-like GTP-binding pr 94.4 0.04 1.4E-06 47.9 5.0 23 243-265 9-31 (182)
378 2va8_A SSO2462, SKI2-type heli 94.4 0.13 4.4E-06 55.7 10.0 53 204-259 7-63 (715)
379 2f9l_A RAB11B, member RAS onco 94.3 0.021 7.1E-07 51.2 3.0 23 243-265 6-28 (199)
380 2zj8_A DNA helicase, putative 94.3 0.22 7.6E-06 54.0 11.7 18 242-259 39-56 (720)
381 4edh_A DTMP kinase, thymidylat 94.3 0.019 6.6E-07 52.9 2.7 32 243-274 7-41 (213)
382 2dyk_A GTP-binding protein; GT 94.3 0.023 7.8E-07 48.3 3.1 22 244-265 3-24 (161)
383 3reg_A RHO-like small GTPase; 94.3 0.034 1.2E-06 49.3 4.4 24 243-266 24-47 (194)
384 1bif_A 6-phosphofructo-2-kinas 94.3 0.012 4.1E-07 60.9 1.4 26 242-267 39-64 (469)
385 3bgw_A DNAB-like replicative h 94.3 0.033 1.1E-06 57.2 4.7 38 238-275 193-233 (444)
386 2il1_A RAB12; G-protein, GDP, 94.3 0.032 1.1E-06 49.6 4.1 22 243-264 27-48 (192)
387 3b85_A Phosphate starvation-in 94.3 0.018 6.1E-07 53.0 2.4 23 243-265 23-45 (208)
388 3v9p_A DTMP kinase, thymidylat 94.2 0.029 1E-06 52.3 3.8 31 244-274 27-64 (227)
389 3lxw_A GTPase IMAP family memb 94.2 0.089 3.1E-06 49.2 7.1 23 243-265 22-44 (247)
390 2pcj_A ABC transporter, lipopr 94.2 0.014 4.7E-07 54.2 1.4 26 242-267 30-55 (224)
391 1oix_A RAS-related protein RAB 94.2 0.021 7E-07 51.0 2.6 23 244-266 31-53 (191)
392 1f6b_A SAR1; gtpases, N-termin 94.1 0.062 2.1E-06 48.1 5.8 22 243-264 26-47 (198)
393 1lw7_A Transcriptional regulat 94.1 0.024 8.2E-07 56.4 3.3 28 242-269 170-197 (365)
394 3k53_A Ferrous iron transport 94.1 0.063 2.2E-06 50.9 6.1 23 243-265 4-26 (271)
395 3sop_A Neuronal-specific septi 94.1 0.021 7.1E-07 54.7 2.7 24 244-267 4-27 (270)
396 2onk_A Molybdate/tungstate ABC 94.1 0.022 7.6E-07 53.5 2.8 25 243-267 25-49 (240)
397 1sky_E F1-ATPase, F1-ATP synth 94.1 0.045 1.5E-06 56.5 5.2 24 243-266 152-175 (473)
398 1w36_D RECD, exodeoxyribonucle 94.1 0.025 8.5E-07 60.5 3.4 24 243-266 165-188 (608)
399 2gza_A Type IV secretion syste 94.1 0.029 1E-06 55.9 3.7 26 242-267 175-200 (361)
400 1ls1_A Signal recognition part 94.1 0.096 3.3E-06 50.6 7.3 35 242-276 98-135 (295)
401 3ice_A Transcription terminati 94.1 0.19 6.4E-06 50.7 9.4 25 242-266 174-198 (422)
402 1b0u_A Histidine permease; ABC 94.1 0.02 6.8E-07 54.5 2.3 26 242-267 32-57 (262)
403 2www_A Methylmalonic aciduria 94.0 0.039 1.3E-06 54.8 4.5 24 243-266 75-98 (349)
404 1gwn_A RHO-related GTP-binding 94.0 0.035 1.2E-06 50.3 3.9 23 243-265 29-51 (205)
405 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.024 8.2E-07 55.9 3.0 26 242-267 171-196 (330)
406 2pze_A Cystic fibrosis transme 94.0 0.017 5.8E-07 53.8 1.7 26 242-267 34-59 (229)
407 1mv5_A LMRA, multidrug resista 94.0 0.02 6.7E-07 53.9 2.2 25 242-266 28-52 (243)
408 4bas_A ADP-ribosylation factor 94.0 0.037 1.3E-06 49.0 3.8 22 243-264 18-39 (199)
409 3p32_A Probable GTPase RV1496/ 94.0 0.042 1.4E-06 54.5 4.6 33 243-275 80-115 (355)
410 1q57_A DNA primase/helicase; d 93.9 0.033 1.1E-06 58.0 3.9 38 238-275 238-279 (503)
411 2q3h_A RAS homolog gene family 93.9 0.04 1.4E-06 49.0 4.0 23 243-265 21-43 (201)
412 2zu0_C Probable ATP-dependent 93.9 0.026 8.8E-07 53.9 2.8 24 242-265 46-69 (267)
413 3t34_A Dynamin-related protein 93.9 0.23 7.8E-06 49.1 9.9 21 244-264 36-56 (360)
414 1sgw_A Putative ABC transporte 93.9 0.019 6.4E-07 53.1 1.8 26 242-267 35-60 (214)
415 2olj_A Amino acid ABC transpor 93.9 0.02 7E-07 54.6 2.1 26 242-267 50-75 (263)
416 1g6h_A High-affinity branched- 93.9 0.019 6.6E-07 54.4 1.9 25 242-266 33-57 (257)
417 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.028 9.5E-07 48.6 2.7 23 244-266 25-47 (149)
418 2ixe_A Antigen peptide transpo 93.8 0.021 7.1E-07 54.7 2.0 25 242-266 45-69 (271)
419 2ghi_A Transport protein; mult 93.8 0.023 7.7E-07 54.1 2.3 26 242-267 46-71 (260)
420 2wsm_A Hydrogenase expression/ 93.8 0.052 1.8E-06 49.2 4.6 25 243-267 31-55 (221)
421 3tmk_A Thymidylate kinase; pho 93.8 0.039 1.3E-06 51.0 3.8 31 243-273 6-36 (216)
422 2d2e_A SUFC protein; ABC-ATPas 93.8 0.024 8.4E-07 53.5 2.4 24 242-265 29-52 (250)
423 1z08_A RAS-related protein RAB 93.8 0.033 1.1E-06 47.8 3.1 23 243-265 7-29 (170)
424 2fv8_A H6, RHO-related GTP-bin 93.8 0.047 1.6E-06 49.1 4.2 23 243-265 26-48 (207)
425 1ky3_A GTP-binding protein YPT 93.8 0.033 1.1E-06 48.3 3.1 24 243-266 9-32 (182)
426 2wji_A Ferrous iron transport 93.8 0.031 1.1E-06 48.4 2.8 23 243-265 4-26 (165)
427 2qi9_C Vitamin B12 import ATP- 93.8 0.02 6.9E-07 54.1 1.7 26 242-267 26-51 (249)
428 2atx_A Small GTP binding prote 93.7 0.047 1.6E-06 48.3 4.1 23 243-265 19-41 (194)
429 2o8b_B DNA mismatch repair pro 93.7 0.097 3.3E-06 59.2 7.5 22 242-263 789-810 (1022)
430 3gfo_A Cobalt import ATP-bindi 93.7 0.02 6.9E-07 55.0 1.7 24 243-266 35-58 (275)
431 2ff7_A Alpha-hemolysin translo 93.7 0.022 7.4E-07 53.8 1.9 25 242-266 35-59 (247)
432 1vpl_A ABC transporter, ATP-bi 93.7 0.025 8.7E-07 53.6 2.3 25 242-266 41-65 (256)
433 4gzl_A RAS-related C3 botulinu 93.7 0.044 1.5E-06 49.3 3.9 23 243-265 31-53 (204)
434 1ji0_A ABC transporter; ATP bi 93.7 0.023 7.8E-07 53.3 1.9 26 242-267 32-57 (240)
435 4f4c_A Multidrug resistance pr 93.7 0.056 1.9E-06 62.9 5.6 25 242-266 1105-1129(1321)
436 1g16_A RAS-related protein SEC 93.7 0.029 1E-06 48.0 2.5 23 243-265 4-26 (170)
437 3iby_A Ferrous iron transport 93.6 0.096 3.3E-06 49.5 6.2 22 244-265 3-24 (256)
438 3q3j_B RHO-related GTP-binding 93.6 0.055 1.9E-06 49.2 4.4 23 243-265 28-50 (214)
439 2yz2_A Putative ABC transporte 93.6 0.027 9.1E-07 53.7 2.3 25 242-266 33-57 (266)
440 2gco_A H9, RHO-related GTP-bin 93.6 0.048 1.6E-06 48.8 3.8 23 243-265 26-48 (201)
441 3cr8_A Sulfate adenylyltranfer 93.6 0.026 8.8E-07 59.7 2.3 33 243-275 370-406 (552)
442 2zej_A Dardarin, leucine-rich 93.5 0.029 1E-06 49.5 2.3 21 244-264 4-24 (184)
443 3def_A T7I23.11 protein; chlor 93.5 0.19 6.6E-06 47.2 8.2 24 243-266 37-60 (262)
444 2j0v_A RAC-like GTP-binding pr 93.5 0.052 1.8E-06 48.8 4.1 23 243-265 10-32 (212)
445 2ihy_A ABC transporter, ATP-bi 93.5 0.023 7.9E-07 54.6 1.7 24 243-266 48-71 (279)
446 2nq2_C Hypothetical ABC transp 93.5 0.023 7.9E-07 53.8 1.7 26 242-267 31-56 (253)
447 1yrb_A ATP(GTP)binding protein 93.4 0.067 2.3E-06 49.9 4.8 34 243-276 15-50 (262)
448 3kw6_A 26S protease regulatory 93.4 0.095 3.3E-06 39.9 4.8 46 375-420 1-47 (78)
449 1tf7_A KAIC; homohexamer, hexa 93.4 0.032 1.1E-06 58.5 2.7 29 238-266 277-305 (525)
450 3iuy_A Probable ATP-dependent 93.4 0.18 6E-06 46.0 7.6 18 242-259 57-74 (228)
451 2wjg_A FEOB, ferrous iron tran 93.4 0.033 1.1E-06 48.9 2.5 23 243-265 8-30 (188)
452 3q85_A GTP-binding protein REM 93.4 0.038 1.3E-06 47.4 2.8 21 244-264 4-24 (169)
453 2it1_A 362AA long hypothetical 93.4 0.034 1.2E-06 55.5 2.8 24 243-266 30-53 (362)
454 3fvq_A Fe(3+) IONS import ATP- 93.4 0.029 9.9E-07 56.0 2.3 24 243-266 31-54 (359)
455 3b1v_A Ferrous iron uptake tra 93.4 0.12 4.2E-06 49.3 6.6 23 243-265 4-26 (272)
456 4djt_A GTP-binding nuclear pro 93.4 0.027 9.1E-07 51.0 1.8 22 243-264 12-33 (218)
457 4g1u_C Hemin import ATP-bindin 93.3 0.031 1.1E-06 53.3 2.3 25 242-266 37-61 (266)
458 2yyz_A Sugar ABC transporter, 93.3 0.035 1.2E-06 55.4 2.8 24 243-266 30-53 (359)
459 2f1r_A Molybdopterin-guanine d 93.3 0.022 7.5E-07 50.7 1.2 25 243-267 3-27 (171)
460 1v43_A Sugar-binding transport 93.3 0.036 1.2E-06 55.6 2.8 25 242-266 37-61 (372)
461 2j1l_A RHO-related GTP-binding 93.3 0.041 1.4E-06 49.9 2.9 22 243-264 35-56 (214)
462 3rlf_A Maltose/maltodextrin im 93.3 0.037 1.3E-06 55.7 2.8 24 243-266 30-53 (381)
463 1z47_A CYSA, putative ABC-tran 93.3 0.033 1.1E-06 55.6 2.4 24 243-266 42-65 (355)
464 1tf7_A KAIC; homohexamer, hexa 93.3 0.034 1.1E-06 58.3 2.6 28 239-266 36-65 (525)
465 3lv8_A DTMP kinase, thymidylat 93.2 0.038 1.3E-06 51.9 2.6 24 243-266 28-51 (236)
466 1tq4_A IIGP1, interferon-induc 93.2 0.061 2.1E-06 54.7 4.3 23 244-266 71-93 (413)
467 3gj0_A GTP-binding nuclear pro 93.1 0.048 1.7E-06 49.5 3.2 23 243-265 16-39 (221)
468 2qm8_A GTPase/ATPase; G protei 93.1 0.053 1.8E-06 53.5 3.7 24 243-266 56-79 (337)
469 2lkc_A Translation initiation 93.1 0.051 1.7E-06 47.0 3.2 23 242-264 8-30 (178)
470 2pjz_A Hypothetical protein ST 93.1 0.035 1.2E-06 52.9 2.3 25 242-266 30-54 (263)
471 3d31_A Sulfate/molybdate ABC t 93.0 0.032 1.1E-06 55.5 1.9 25 242-266 26-50 (348)
472 1g29_1 MALK, maltose transport 93.0 0.037 1.3E-06 55.5 2.4 24 243-266 30-53 (372)
473 3ld9_A DTMP kinase, thymidylat 92.9 0.052 1.8E-06 50.4 3.1 26 243-268 22-47 (223)
474 1fx0_A ATP synthase alpha chai 92.9 0.18 6.3E-06 52.2 7.4 61 244-304 165-231 (507)
475 3l0o_A Transcription terminati 92.9 0.13 4.6E-06 51.7 6.1 64 244-307 177-276 (427)
476 1svi_A GTP-binding protein YSX 92.8 0.031 1.1E-06 49.4 1.4 24 242-265 23-46 (195)
477 4ag6_A VIRB4 ATPase, type IV s 92.8 0.11 3.7E-06 52.1 5.4 35 242-276 35-72 (392)
478 2bbs_A Cystic fibrosis transme 92.7 0.033 1.1E-06 53.9 1.5 25 242-266 64-88 (290)
479 2obl_A ESCN; ATPase, hydrolase 92.7 0.071 2.4E-06 52.9 4.0 29 243-271 72-100 (347)
480 4tmk_A Protein (thymidylate ki 92.7 0.049 1.7E-06 50.2 2.6 24 243-266 4-27 (213)
481 2gj8_A MNME, tRNA modification 92.7 0.041 1.4E-06 48.2 2.0 23 243-265 5-27 (172)
482 1ko7_A HPR kinase/phosphatase; 92.7 0.066 2.3E-06 52.4 3.6 29 242-271 144-172 (314)
483 2qe7_A ATP synthase subunit al 92.7 0.2 6.7E-06 52.0 7.3 60 244-303 164-229 (502)
484 3c5c_A RAS-like protein 12; GD 92.7 0.06 2.1E-06 47.6 3.1 22 244-265 23-44 (187)
485 2hf9_A Probable hydrogenase ni 92.7 0.097 3.3E-06 47.5 4.6 24 243-266 39-62 (226)
486 1qhl_A Protein (cell division 92.7 0.023 7.9E-07 53.0 0.3 23 245-267 30-52 (227)
487 1vg8_A RAS-related protein RAB 92.6 0.061 2.1E-06 47.9 3.1 24 243-266 9-32 (207)
488 2gks_A Bifunctional SAT/APS ki 92.6 0.086 2.9E-06 55.6 4.7 32 243-274 373-407 (546)
489 1oxx_K GLCV, glucose, ABC tran 92.6 0.031 1.1E-06 55.7 1.2 25 242-266 31-55 (353)
490 3r7w_A Gtpase1, GTP-binding pr 92.6 0.22 7.5E-06 48.2 7.3 23 243-265 4-26 (307)
491 2iwr_A Centaurin gamma 1; ANK 92.5 0.048 1.6E-06 47.4 2.2 23 243-265 8-30 (178)
492 2orv_A Thymidine kinase; TP4A 92.5 0.76 2.6E-05 42.8 10.4 32 243-274 20-54 (234)
493 3ihw_A Centg3; RAS, centaurin, 92.5 0.065 2.2E-06 47.4 3.1 23 243-265 21-43 (184)
494 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.058 2E-06 55.6 3.1 26 241-266 137-162 (460)
495 2cxx_A Probable GTP-binding pr 92.5 0.049 1.7E-06 47.7 2.1 22 244-265 3-24 (190)
496 2db3_A ATP-dependent RNA helic 92.4 0.58 2E-05 47.3 10.5 51 205-258 56-109 (434)
497 3nh6_A ATP-binding cassette SU 92.4 0.033 1.1E-06 54.3 1.0 25 242-266 80-104 (306)
498 3gd7_A Fusion complex of cysti 92.3 0.05 1.7E-06 54.9 2.3 25 242-266 47-71 (390)
499 2dpy_A FLII, flagellum-specifi 92.3 0.1 3.4E-06 53.5 4.6 28 243-270 158-185 (438)
500 4hlc_A DTMP kinase, thymidylat 92.3 0.11 3.7E-06 47.4 4.3 29 245-273 5-35 (205)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=321.55 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=180.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++|++|.+.+..++.+|+.|.+.|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
++..++.+|..+. .||||||||||+++.. |.... ++.......+++.||+.|||+.+ ..+++||+|||
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~--R~~~~--~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATN 295 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST--RVEGS--GGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATN 295 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTS--CSCSS--SGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEES
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccC--CCCCC--CCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccC
Confidence 3677889988764 7999999999999762 22211 11123345689999999999976 47799999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+|+.|||||+||||||.+|+||.|+.++|.+|++.++......-..+++.+++.+ ++|+|||...+.
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999765333223456666554 799999977654
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-38 Score=320.99 Aligned_cols=214 Identities=23% Similarity=0.296 Sum_probs=180.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
..+..+|++++|.+++|++|.+.+..++.++++|...|.++++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 3455799999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred -----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
++..++.+|..+. .||||||||||+++. .|.... .........+++.||+.|||+.. .++++||+||
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~--~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaAT 328 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT--KRYDSN--SGGEREIQRTMLELLNQLDGFDD--RGDVKVIMAT 328 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC--CCSCSS--CSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc--cCCCCC--CCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeC
Confidence 3567788887764 799999999999976 332221 11123446789999999999865 4789999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+++.|||||+||||||++|+|+.|+.++|++||+.++......-..+++.++..+ ++|+|||...+.
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999765332222355666554 899999987664
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-38 Score=322.56 Aligned_cols=216 Identities=21% Similarity=0.275 Sum_probs=180.3
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ 279 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~ 279 (450)
...++.+|++++|.+++|++|.+.+..++.+|+.|.+.|+++++|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ------CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 280 ------SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 280 ------~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
++..++.+|..+. .||||||||||+++. .|..... +.......+++.||+.|||+.+ .++++||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~--~R~~~~~--~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaa 326 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK--SGDREVQRTMLELLNQLDGFSS--DDRVKVLAA 326 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC--CCSSGGG--GTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh--ccCCCCC--CCchHHHHHHHHHHHHhhccCC--CCCEEEEEe
Confidence 3567888887664 799999999999975 3322221 1122345678999999999876 467999999
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
||+|+.|||||+||||||.+|+||.|+.++|.+||+.++......-...++.++..+ ++|+|||...+..
T Consensus 327 TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999988654222112345555554 7999999876643
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=318.88 Aligned_cols=213 Identities=23% Similarity=0.298 Sum_probs=179.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++|++|.+.+..++.+|+.|...|+++++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+...++.+|..+ ..||||||||||+++. .|.... .........+++.||+.|||+.+ .++++||+|||
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~--~R~~~~--~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATN 328 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG--RRFSEG--TSADREIQRTLMELLTQMDGFDN--LGQTKIIMATN 328 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC--CCSSSC--CSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEES
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc--ccccCC--CCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecC
Confidence 356678888766 4799999999999976 332211 11123346689999999999876 46799999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+|+.|||||+||||||.+|+||+|+.++|.+||+.++......-..++..++..+ ++|++||...+.
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998654322222456666655 899999987664
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=318.49 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=179.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++|+.|.+.+..++.+|++|...|+++++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 445689999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
+...++.+|..+. .||||+|||+|+++. .|.... .......+.++++||+.|||+.+ ..+++||+|||
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~--~R~~~~--~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN 319 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQ--TGSDREVQRILIELLTQMDGFDQ--STNVKVIMATN 319 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC--SCSSSC--SCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEES
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc--cccCCC--CCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecC
Confidence 3567888887764 799999999999976 332211 11223456789999999999976 46799999999
Q ss_pred CCCCCCccccCCCcceeEEEeC-CCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMS-YCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~-~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+++.|||||+||||||++|+|| .|+.++|..|++.++.........+++.++..+ ++|+|||...+..
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 899999999999998654322222355666554 8999999876643
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=317.42 Aligned_cols=213 Identities=22% Similarity=0.259 Sum_probs=178.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.+..+|++++|.+++|++|.+.+..++.+++.|.+.|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
++..++.+|..+ ..||||||||||.++. .|.... .+.......+++.+|+.|||... ..+++||+|||
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~--~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATN 356 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGG--ARFDDG--AGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATN 356 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB--CCSSSS--CGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccc--cccCcC--CCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCC
Confidence 356788888776 4799999999999976 332211 11123345678999999999865 47799999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
+++.|||||+||||||.+|+|+.|+.++|.+||+.++..........++.++..+ ++|+|||...+.
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999765332222345555544 799999977654
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3.1e-33 Score=306.74 Aligned_cols=213 Identities=21% Similarity=0.337 Sum_probs=160.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc----
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV---- 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~---- 278 (450)
+..+|++++|.+++|+.+.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CCchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 279 --QSNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 279 --~~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
.++..++++|..+. .||||||||||+++. .|.... +........++++||.+|||+.+ ..+++||+|||+
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~--~R~~~~--~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~ 625 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNI--GDGGGAADRVINQILTEMDGMST--KKNVFIIGATNR 625 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------CHHHHHHHHHHHSSCS--SSSEEEECC-CC
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhh--ccCCCC--CCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCC
Confidence 36788999998874 699999999999986 332111 11234566789999999999966 467899999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|+.||||++||||||.+|++|.|+.++|.+||+.++.........+++.+++.+ ++|++||...+..
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHH
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999765433334566666654 7999999887654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.3e-31 Score=293.95 Aligned_cols=210 Identities=22% Similarity=0.298 Sum_probs=179.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ--- 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~--- 279 (450)
+..+|++++|.++++++|.+.+..++.+|+.|...|..+++|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999988863
Q ss_pred ---CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 280 ---SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 280 ---~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
++..++.+|..+. .||||||||||.+++ .+... .....+.++++||..||++.+. .+++||+|||+
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~--~r~~~-----~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~ 349 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-----HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNR 349 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC--TTTTC-----CCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSS
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccccc--ccCCC-----CChHHHHHHHHHHHHHhccccc--CCEEEEEecCC
Confidence 3577889998764 699999999999976 22221 2344567899999999998763 57899999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
++.||++|+|||||+.+|+++.|+.++|.+|++.++..........+..++..+ +++++|+...+..
T Consensus 350 ~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417 (806)
T ss_dssp TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred hhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998765333333456666554 8999999876644
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=4.8e-28 Score=239.24 Aligned_cols=215 Identities=20% Similarity=0.315 Sum_probs=173.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
..++.+|++++|.+++++.+.+.+..++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ ..|+||||||||.+........ ..........+..||..++++.. ..+++||+||
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~at 161 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI----GDGGGAADRVINQILTEMDGMST--KKNVFIIGAT 161 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT----CCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc----CCcchHHHHHHHHHHHHhhcccC--CCCEEEEEec
Confidence 345677777765 3689999999999865221111 11123345678899999998754 4678999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELMK 421 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~~ 421 (450)
|.++.+|++++|||||+..|+++.|+.++|.+|++.++..........++.++.. .+++++|+...+.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~ 231 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 231 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975432211223344443 47999998776654
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=231.72 Aligned_cols=210 Identities=19% Similarity=0.310 Sum_probs=163.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
+..+|++++|.+++|+.+.+.+..++.+++.|+.+|...++|++|+||||||||+|++++|++++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999887742
Q ss_pred ----chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 281 ----NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 281 ----~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
...++.+|..+ ..|+++++||+|.+... +.... .......++.++..|+|... ....+++++||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~--r~~~~-----~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~ 155 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR--RSDRE-----TGASVRVVNQLLTEMDGLEA--RQQVFIMAATNR 155 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------CTTHHHHHHHHHHTCCS--TTCEEEEEEESC
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcc--cCCCc-----chHHHHHHHHHHHhhhcccc--cCCEEEEeecCC
Confidence 34567777764 46899999999987642 21111 12234568899999998754 456788899999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc-CCCc--HHHHHHHHhc---CCCCHHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS-HHHL--FEQIEEMLMK---VNVTPAEVAGELMK 421 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~-~~~l--~~ei~~l~~~---~~~spa~i~~~L~~ 421 (450)
|+.||++++||||||.+|++++|+.++|.+|++.++... ..++ ...++.++.. .++|++|+...+..
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~ 228 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVRE 228 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHH
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999998542 1111 2235556654 38999999876544
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=231.66 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=175.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecCccC-
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLTDVQ- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~~~~- 279 (450)
.++.+|++++|.+++|+.+.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 35568999999999999999999999999998874 34556899999999999999999999999 8999999998873
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ .+++||||||||.+.. .+... ........++.||..++++... ..+++||+||
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~--~~~~~-----~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~at 156 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-----ESEAARRIKTEFLVQMQGVGVD-NDGILVLGAT 156 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC--CSSSC-----CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc--ccccc-----cchHHHHHHHHHHHHHhccccc-CCCEEEEEec
Confidence 345677777654 4789999999999865 22111 1223456788999999997532 4678999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHHHhccCcHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELMKSKCKYAEIS 430 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~~~~~~~~~~a 430 (450)
|.++.+|++++| ||+..++++.|+.++|.+|++.++......+ ...+..++... +++++|+...+.. ....|
T Consensus 157 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~----A~~~a 230 (322)
T 1xwi_A 157 NIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD----ALMQP 230 (322)
T ss_dssp SCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH----HHTHH
T ss_pred CCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH----HHHHH
Confidence 999999999999 9999999999999999999999997665443 45677777665 7999999876654 23345
Q ss_pred HHHHH
Q 013083 431 LQGIV 435 (450)
Q Consensus 431 l~~l~ 435 (450)
++.+.
T Consensus 231 ~r~~~ 235 (322)
T 1xwi_A 231 VRKVQ 235 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=220.67 Aligned_cols=212 Identities=24% Similarity=0.358 Sum_probs=155.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC---
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS--- 280 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~--- 280 (450)
+.+|++++|.+++|+.+.+.+. ++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4579999999999999988765 578888899999999999999999999999999999999999999999988742
Q ss_pred ---chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 281 ---NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 281 ---~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
...++.+|..+. .++||+|||+|.+... +... ..+......+..+..+++.+++... ..++++|+|||.+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~--~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKK--RSTT-MSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRA 155 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcc--cccc-ccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCCh
Confidence 345566665543 5899999999998641 1110 0011123445678899999998644 4678999999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHH--HHHHHhcC-CCCHHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQ--IEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~e--i~~l~~~~-~~spa~i~~~L~~ 421 (450)
+.+|++++|||||+..++++.|+.++|.+|++.++.......... +..+.... +++++++...+..
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNE 224 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999987654444333 24555543 7999998776653
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=1.6e-26 Score=230.32 Aligned_cols=210 Identities=21% Similarity=0.240 Sum_probs=171.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
..++.+|++++|.+++|+.+.+.+..++..++.|...+ .+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 56677899999999999999999999999998887744 4568999999999999999999999999999999988762
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ ..++||+|||||.+... +... ...........|+..++++... ..+++||+||
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~--~~~~-----~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~at 161 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT--RGEG-----ESEASRRIKTELLVQMNGVGND-SQGVLVLGAT 161 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhcc--CCCC-----cchHHHHHHHHHHHHhcccccc-CCceEEEEec
Confidence 234566666554 36899999999998652 2111 1234566789999999988543 4678999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|.++.||++++| ||+..++++.|+.++|.+|++.++......+ ...+..++... +++++++...+..
T Consensus 162 n~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 162 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp SCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998765443 45677777665 7999999876654
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=2.9e-26 Score=220.62 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=162.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
...+.+|++++|.+++++.+.+.+. ++..+..|+..|...++|+||+||||||||++++++|+.++.+++.++++++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4567899999999999999988664 57788889999988899999999999999999999999999999999988873
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ ..+++++|||||.+.. .+.... ..........+..+|..+++... ..+++||+||
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~--~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~t 157 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGL--GGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAAT 157 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC--CCSTTS--CCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc--CCCCCc--CCCchHHHHHHHHHHHHhhCccc--CCCEEEEEee
Confidence 235567777664 3578999999998864 111110 01112234678899999998754 4678999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|.++.+|++++|||||+..++++.|+.++|.+|++.++..........+..+.... +++++|+...+..
T Consensus 158 n~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 158 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp SCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998654221111233344444 6799999776543
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=1.8e-26 Score=240.97 Aligned_cols=211 Identities=25% Similarity=0.367 Sum_probs=167.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
...+|++++|.++.++++.+.+. ++..+..|.++|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45589999999999999988765 677889999999999999999999999999999999999999999999988742
Q ss_pred ----chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 281 ----NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 281 ----~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
...++.+|..+ ..|+||||||||.+.. .+.... ++.......+++.||..||++.. ..+++||+|||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~--~r~~~~--~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~ 163 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR--HRGAGL--GGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNR 163 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC--C-----------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--hccccc--CcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCC
Confidence 34567777665 3799999999999864 221110 11123345689999999998754 357899999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
++.+|++++|||||+..|.++.|+.++|.+|++.++..........+..+.... +++++|+...+.
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999988754221111244455544 788999876654
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.7e-26 Score=225.17 Aligned_cols=215 Identities=23% Similarity=0.263 Sum_probs=171.4
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ 279 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~ 279 (450)
...++.+|++++|.+++++.+.+.+..++..++.|...|...++++||+||||||||++++++|+.++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred C------chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 280 S------NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 280 ~------~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
. ...++.++..+ ..++||+|||+|.+.. .+.... .......+..+..+++.+++... ..+++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~--~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~t 162 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA--KRTDAL--TGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGA 162 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB--CCSSSC--CGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEE
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc--cCcccc--CCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEe
Confidence 2 24455555544 3679999999999864 221110 00122345678888888887644 467899999
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
||.++.+|++++|||||+..++++.|+.+++.+|++.++..........+..++... +++++++...+.
T Consensus 163 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 163 TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998755333333345555443 789999877554
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=8.9e-26 Score=228.21 Aligned_cols=210 Identities=21% Similarity=0.254 Sum_probs=166.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
...+.+|++++|.+++++.|.+.+..++..++.|.. +..+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 445678999999999999999999999999998887 556678999999999999999999999999999999988762
Q ss_pred -----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....++.+|..+ ..++||||||||.+.. .+... ...........||..|+++... ..+++||+||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~r~~~-----~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEG-----ESEASRRIKTELLVQMNGVGND-SQGVLVLGAT 194 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------------CTHHHHHHHHHHHHHHHCC----CCEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--cCCCC-----cchHHHHHHHHHHHHhhccccc-CCCeEEEeec
Confidence 345566777655 3789999999999864 11111 1223456688899999987542 3578999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|.++.+|++++| ||+..++++.|+.++|.+|++.++......+ ...++.++... +++++++...+..
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999 9999999999999999999999997665433 45667776655 7899999876654
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=4e-25 Score=229.90 Aligned_cols=220 Identities=21% Similarity=0.255 Sum_probs=172.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecCccC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLTDVQ 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~~~~ 279 (450)
..++.+|++++|.+++++.+.+.+..++..++.|.. +..+++++|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456678999999999999999999999988888875 34456899999999999999999999999 8999999998863
Q ss_pred ------CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 280 ------SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 280 ------~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
....++.+|..+ ..++||||||||.+.. .+... ........++.||..++++... ..+++||+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~-----~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~a 277 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-----ESEAARRIKTEFLVQMQGVGVD-NDGILVLGA 277 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC--CSSCC-----CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--CCCCc-----cccHHHHHHHHHHHHHhCcccC-CCCEEEEec
Confidence 245567777654 4689999999999865 22111 1233456788999999987532 467899999
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHHHhccCcHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELMKSKCKYAEI 429 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~~~~~~~~~~ 429 (450)
||.++.+|++|+| ||+.+++++.|+.++|..|++.++......+ ...+..++... +++++|+...+.. ....
T Consensus 278 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~----a~~~ 351 (444)
T 2zan_A 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRD----ALMQ 351 (444)
T ss_dssp ESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHH----HHTH
T ss_pred CCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH----HHHH
Confidence 9999999999999 9999999999999999999999997654432 45666776654 7999999876654 2344
Q ss_pred HHHHHH
Q 013083 430 SLQGIV 435 (450)
Q Consensus 430 al~~l~ 435 (450)
|++.++
T Consensus 352 a~r~~~ 357 (444)
T 2zan_A 352 PVRKVQ 357 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=2.3e-25 Score=233.95 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=171.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
.+.+|++++|.++.++.+.+.+..++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++|+++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ----chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 281 ----NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 281 ----~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
...++.+|..+. .|+||||||||.+... +... ........+..||..|++... ..+++||+|||.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~--~~~~-----~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK--REKT-----HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBC--TTSC-----CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccc--cccc-----cchHHHHHHHHHHHHhhcccc--CCceEEEEecCC
Confidence 345667776653 6899999999999751 1111 122335678899999998754 467899999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELM 420 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~ 420 (450)
++.||++++|+|||+..|+++.|+.++|.+|++.++..........+..++.. .+++++++...+.
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999875433333334555554 3799999876543
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=4.4e-26 Score=220.41 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=160.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC-
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS- 280 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~- 280 (450)
..+.+|++++|.++.++.+.+.+. ++..++.|...|...++|+||+||||||||++|+++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 446689999999999999988665 578899999999999999999999999999999999999999999999887631
Q ss_pred -----chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 281 -----NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 281 -----~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
...++.+|..+ ..++||+|||+|.+......... ..........++.|++.+++.... ...++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn 159 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV---VSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATN 159 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBS
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhccccccccc---CCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecC
Confidence 22334444433 36799999999998642111000 011233445678888888876432 34589999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
.++.+|++++|+|||+..++++.|+.++|.++++.++..........++.+.... +++++++...+..
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998653221111233333333 6888888766543
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=2.9e-24 Score=225.56 Aligned_cols=211 Identities=25% Similarity=0.342 Sum_probs=165.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC--
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS-- 280 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~-- 280 (450)
.+.+|++++|.++.++++.+.+. ++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999988664 677888899999999999999999999999999999999999999999988742
Q ss_pred ----chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC
Q 013083 281 ----NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH 354 (450)
Q Consensus 281 ----~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~ 354 (450)
...++.+|..+. .|+|++|||||.+... +.... +........+++.+|..|+|... ...++++++||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~--r~~~~--~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~ 178 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK--RGSGV--GGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNR 178 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCC--SSSST--TTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHh--hccCc--CCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCC
Confidence 345677787764 5899999999988642 11100 01122334678999999998754 456899999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 355 KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 355 ~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|+.||++++|||||+.+|+++.|+.++|.+|++.++..........+..+.... +++++|+.+.+.
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999887543211112234444444 788888877654
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=218.48 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=165.2
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC
Q 013083 200 VLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ 279 (450)
Q Consensus 200 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~ 279 (450)
...+|.+|++++|.+.+++.+.+.+..+...++.|...+.+ .+++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 36788899999999999999999999999888888887754 68999999999999999999999999999999999874
Q ss_pred C------chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 280 S------NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 280 ~------~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
. ...++.+|..+ ..++||||||||.++. .+.. .........+..|+..+++........++||+|
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~--~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC--ERRE-----GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc--cCCC-----ccchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 2 34456666544 3679999999999865 1111 112334567888999999886654567899999
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
||.++.++++++| ||+.+|+++.|+.++|..+++.++......+ ...+..++... +++++++...+.
T Consensus 259 tn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 259 TNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp ESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999987765544 34555555544 688888866543
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=8.1e-24 Score=203.17 Aligned_cols=214 Identities=24% Similarity=0.328 Sum_probs=161.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ- 279 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~- 279 (450)
..++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||++++++|+.++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 3455689999999999999987665 45677889999999999999999999999999999999999999999876542
Q ss_pred -----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 280 -----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 280 -----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
....+..+|.... .++++++||||.+..... ... +.........+..++..++|... ....+++++|
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~--~~~--~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t 161 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--SGV--GGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 161 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC--ccc--cccchHHHHHHHHHHHHHhCCCC--CCCEEEEEcc
Confidence 1234666776653 589999999998854211 100 00112234567889999998644 3457888999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
|+|+.+|++++|||||+.+|+++.|+.++|.+|++.+...........+..++... +++++|+...+..
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 231 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999887543221112244455544 7888998776654
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.2e-24 Score=213.54 Aligned_cols=210 Identities=21% Similarity=0.312 Sum_probs=164.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
...|.+|++++|.++.++.+.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34577899999999999999999998888888887765 44689999999999999999999999999999999988742
Q ss_pred ------chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 281 ------NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 281 ------~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
...++.+|..+ ..++||||||||.+.. .+... ........+..||..+++........++||+||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~-----~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS--QRGDG-----EHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB--C-----------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc--cCCCC-----cchHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 23455555544 4689999999999864 11111 122345678889999998765445678999999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 353 NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 353 N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|.++.++++++| ||+..++++.|+.++|.+++..++......+ ...++.++... +++++++...+.
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999 9999999999999999999999886554443 44566666554 789999876554
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=2.4e-23 Score=204.16 Aligned_cols=210 Identities=21% Similarity=0.265 Sum_probs=161.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
...+.+|++++|.++.++.+.+.+.....+++.|...+. .++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC-CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 456789999999999999999999988888888877664 3689999999999999999999999999999999988742
Q ss_pred ------chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-CCCCeEEEEE
Q 013083 281 ------NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC-CSEGRIIIFT 351 (450)
Q Consensus 281 ------~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~-~~~~~iiI~T 351 (450)
...++.++..+ ..++||+|||+|.+... +... .........+.|+..+++.... .+..++||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~--~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE--RSSS-----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC--C----------CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccc--cccC-----cchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 23445555443 47899999999998752 1111 1223455677889999987542 1256889999
Q ss_pred cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 352 TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 352 TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
||.++.+++++++ ||+..++++.|+.++|..+++.++......+ ...+..++... +++++++...+.
T Consensus 166 tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 166 TNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp ESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999987654444 33455555443 788888866554
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=1.5e-23 Score=206.50 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=117.3
Q ss_pred hhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC------CchhHHHHHhcC------CCceEEEEEccc
Q 013083 236 RVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------SNSDLRSLLLSM------PSRSMLVIEDID 303 (450)
Q Consensus 236 ~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------~~~~L~~l~~~~------~~~sIlviDdiD 303 (450)
..+.++++++|||||||||||++|+++|++++.+++.++++++. ....++.+|..+ ..++||+|||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34667789999999999999999999999999999999988763 234566666554 378999999999
Q ss_pred ccccccccCcccccCCCCCCchhhHHhHHHHhhcccc---------cCCCCeEEEEEcCCCCCCCccccCCCcceeEEEe
Q 013083 304 CSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS---------CCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHM 374 (450)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~---------~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~ 374 (450)
.+.. .+.... ......+...+.|++.+|+... ....+++||+|||+++.+|++|+|||||+.+|++
T Consensus 110 ~~~~--~~~~~~---~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 110 AGAG--RMGGTT---QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp -------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC
T ss_pred hhcC--CCCCCc---cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC
Confidence 9865 111110 0112344667889999885431 1235689999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc
Q 013083 375 SYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK 407 (450)
Q Consensus 375 ~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~ 407 (450)
|+.++|.+|++.++...+. ....+..+...
T Consensus 185 --P~~~~r~~Il~~~~~~~~~-~~~~l~~~~~~ 214 (293)
T 3t15_A 185 --PTREDRIGVCTGIFRTDNV-PAEDVVKIVDN 214 (293)
T ss_dssp --CCHHHHHHHHHHHHGGGCC-CHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHhccCCCC-CHHHHHHHhCC
Confidence 6999999999998864432 24555555554
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.90 E-value=9e-23 Score=198.82 Aligned_cols=213 Identities=24% Similarity=0.333 Sum_probs=160.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
.++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|+++||+.++.+++.+++.++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 466789999999999999877665 45677889999999899999999999999999999999999999999876552
Q ss_pred ----CchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
....+..+|... ..++++++||||.+..... ... ..........+..++..++|... ....+++++||
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~--~~~--~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~ 186 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--SGV--GGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATN 186 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC------------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEES
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc--ccc--CCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecC
Confidence 123455666654 3589999999998754111 100 00112234567888898987643 34578889999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~~ 421 (450)
+|+.+|++++|||||+.+|+++.|+.++|.+|++.++..........+..+.... +++++|+...+..
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 255 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543211112244444443 7888888766553
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.7e-25 Score=248.20 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=165.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC--
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ-- 279 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~-- 279 (450)
....+|++++|.+++|+.+.+.+..++..+..|...|..++.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345689999999999999999888888888888889999999999999999999999999999999999999988873
Q ss_pred ----CchhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 280 ----SNSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 280 ----~~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
....++.+|..+. .|+||||||||.+... +.... +........+++.||+.||+... ..+++||+|||
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~--r~~~~--~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN 624 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKA--RGGNI--GDGGGAADRVINQILTEMDGMST--KKNVFIIGATN 624 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCT--TTTCC--SHHHHHHHHHHHHHHTTCC--------CCBCCCCCB
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhh--ccCCC--CCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecC
Confidence 3566788887764 6899999999998652 21110 00012345678999999999865 46789999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGELMK 421 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L~~ 421 (450)
+++.||+|++|||||+.+|+++.|+.++|..|++.++..........+..++.. .++|++++...+..
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~ 693 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHH
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999864321111122233332 37899998776543
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=2.8e-21 Score=214.35 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=168.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC-
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS- 280 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~- 280 (450)
..+.+|++|+|.+++++.+.+.+..++.+++.|..++...++++||+||||||||++++++|+.++.+++.+++.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999877632
Q ss_pred -----chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC
Q 013083 281 -----NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN 353 (450)
Q Consensus 281 -----~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN 353 (450)
...++.+|..+. .++++||||||.+.. ++... ........+..|+..+++... ...+++|+|||
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~--~~~~~-----~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn 348 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-----HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATN 348 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC--TTSCC-----CSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECS
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh--ccccc-----cchHHHHHHHHHHHHhhhhcc--cccEEEecccC
Confidence 345666676653 689999999999875 21111 112235677889999998765 35689999999
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc-CCCCHHHHHHHH
Q 013083 354 HKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK-VNVTPAEVAGEL 419 (450)
Q Consensus 354 ~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~-~~~spa~i~~~L 419 (450)
+++.+|+++.++|||+..++++.|+.++|.++++.+...........+..+... .+++++++...+
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 999999999999999999999999999999999988765422222234445544 378888876544
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=8.3e-19 Score=174.87 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=148.4
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
..|.. ..+|.+|++++|.++.++.+...+...... .....++||+||||||||++|+++|+.++.+++
T Consensus 17 ~~~~~----~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 17 ETYET----SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hhhhh----ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 35765 678999999999999999998888765431 122468999999999999999999999999999
Q ss_pred EEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc----------
Q 013083 272 DLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC---------- 341 (450)
Q Consensus 272 ~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~---------- 341 (450)
.+++..+.....+...+.....+++|+|||||.+. ......|+..++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 85 TTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLS------------------PAIEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp EEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCC------------------HHHHHHHHHHHHTSCC---------CC
T ss_pred EecchhccchhHHHHHHHhccCCCEEEEechhhcC------------------HHHHHHHHHHHHhccchhhcccCcccc
Confidence 99999988888888899888899999999999873 23455666666643200
Q ss_pred ----CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHH-HHHHHhcCCCCHHHHH
Q 013083 342 ----CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQ-IEEMLMKVNVTPAEVA 416 (450)
Q Consensus 342 ----~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~e-i~~l~~~~~~spa~i~ 416 (450)
....+++|++||....++++|++ ||+.+++++.|+.+++..++..++......+.++ ++.++....-.+.++.
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 01137899999999999999999 9999999999999999999998886554444333 3444444445565555
Q ss_pred HHH
Q 013083 417 GEL 419 (450)
Q Consensus 417 ~~L 419 (450)
..+
T Consensus 225 ~~l 227 (338)
T 3pfi_A 225 RLL 227 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=8.2e-19 Score=174.04 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=146.3
Q ss_pred CCcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 191 YGCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 191 ~~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
...|.. ...|.+|++++|.++.++.+.+.+. . | ..+..+|++||||||||++++++|++++.++
T Consensus 13 ~~~~~~----k~rP~~~~~ivg~~~~~~~l~~~l~----~-------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 13 EHILEQ----KYRPSTIDECILPAFDKETFKSITS----K-------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp CSSHHH----HSCCCSTTTSCCCHHHHHHHHHHHH----T-------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred cchHHH----hhCCCCHHHHhCcHHHHHHHHHHHH----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 346766 7899999999999999888777664 1 1 2246789999999999999999999999999
Q ss_pred EEEecCccCCchhHHHHHh----cCC---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC
Q 013083 271 YDLDLTDVQSNSDLRSLLL----SMP---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS 343 (450)
Q Consensus 271 ~~l~~~~~~~~~~L~~l~~----~~~---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~ 343 (450)
+.+++++.. ...++..+. ..+ .+.||+|||+|.+.. ......|+..++...
T Consensus 77 ~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------------~~~~~~L~~~le~~~---- 134 (324)
T 3u61_B 77 MFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------------AESQRHLRSFMEAYS---- 134 (324)
T ss_dssp EEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------------HHHHHHHHHHHHHHG----
T ss_pred EEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------------HHHHHHHHHHHHhCC----
Confidence 999988764 444444332 222 688999999998731 124456666666542
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhc--CCCCHHHHHHHHHH
Q 013083 344 EGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMK--VNVTPAEVAGELMK 421 (450)
Q Consensus 344 ~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~--~~~spa~i~~~L~~ 421 (450)
.+..+|+|||.+..++++|++ |+. .++|+.|+.+++.+++..++. .+...+.. ..+++.++.+.+..
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~--------~l~~~~~~~~~~~~~~~~~~~l~~ 203 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIR--------RLTEICKHEGIAIADMKVVAALVK 203 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHH--------HHHHHHHHHTCCBSCHHHHHHHHH
T ss_pred CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH--------HHHHHHHHcCCCCCcHHHHHHHHH
Confidence 356788999999999999999 996 599999999999888877653 22333332 33444366666766
Q ss_pred hccCcHHHHHHHHHHHH
Q 013083 422 SKCKYAEISLQGIVKFL 438 (450)
Q Consensus 422 ~~~~~~~~al~~l~~~l 438 (450)
...++...++..|..+.
T Consensus 204 ~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 204 KNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HTCSCTTHHHHHHHHHG
T ss_pred hCCCCHHHHHHHHHHHh
Confidence 66677777777776665
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.78 E-value=6.8e-18 Score=166.85 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=146.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
..+|.+|++++|.+..++.+...+...... + ....++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 567889999999999999988877655321 1 12468999999999999999999999999999999999887
Q ss_pred chhHHHHHhc-CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc-----c---------CCCC
Q 013083 281 NSDLRSLLLS-MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS-----C---------CSEG 345 (450)
Q Consensus 281 ~~~L~~l~~~-~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~-----~---------~~~~ 345 (450)
...+...+.. ...+++|||||||.+.. .....|+..++.... . ...+
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSR------------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCH------------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred hHHHHHHHHHhccCCCEEEEECCccccc------------------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 7888888877 67889999999997732 234455665553210 0 0124
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcH-HHHHHHHhcCCCCHHHHHHHHH
Q 013083 346 RIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLF-EQIEEMLMKVNVTPAEVAGELM 420 (450)
Q Consensus 346 ~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~ei~~l~~~~~~spa~i~~~L~ 420 (450)
+++|++||.++.++++|.+ ||+.++.++.|+.+++..++..++......+. +.++.++...+-.|.++.+.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 6899999999999999999 99989999999999999999998865544443 3344454444556666655543
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=1.3e-19 Score=188.97 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=117.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC--CcEEEEecCccCC-
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK--FDIYDLDLTDVQS- 280 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~--~~~~~l~~~~~~~- 280 (450)
...|++++|.++.++.+...+..+. .|..+++++|||||||||||++|+++|++++ .+++.++++++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 3458999999999998887765443 2455578999999999999999999999999 9999999988742
Q ss_pred ----chhHHHHHhcC-----CCceEEEEEcccccccccccCcccccCCCC--------------CCchhhHHhHHHHhhc
Q 013083 281 ----NSDLRSLLLSM-----PSRSMLVIEDIDCSITLENRDSKDQAGHNQ--------------GDNKVTLSGLLNFIDG 337 (450)
Q Consensus 281 ----~~~L~~l~~~~-----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~--------------~~~~~~l~~LL~~ldg 337 (450)
...+++.|..+ ..|+||||||||.++.. +......+... .........++..++.
T Consensus 105 ~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPC--ETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccc--cCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 23477888776 36899999999999863 22211000000 0011223446666653
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccccCCCccee--EEEeCCCCH
Q 013083 338 LWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDM--HIHMSYCTA 379 (450)
Q Consensus 338 ~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~--~I~~~~p~~ 379 (450)
.....++.++|++|||+++.+|+++.||||||. .+.+|.|+.
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 222224445566899999999999999999999 566677753
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=5.9e-18 Score=166.33 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=132.5
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCC---CceeeeeCCCCCchHHHHHHHHHHc-------CCcEEEEecCcc
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAW---KRGYLLYGPPGTGKSSLIAAMANHL-------KFDIYDLDLTDV 278 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rgiLL~GppGTGKTsla~alA~~l-------~~~~~~l~~~~~ 278 (450)
+++|.+++|+.|.+.+..... +..+.+.|... ..++||+||||||||++|+++|+.+ +.+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988876553 55666666544 3469999999999999999999998 348999998877
Q ss_pred CC------chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc
Q 013083 279 QS------NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT 352 (450)
Q Consensus 279 ~~------~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT 352 (450)
.. ...+..+|... .++||+|||+|.+... +. ........+..|++.++.. ..+.++|+||
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~--~~-------~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~ 176 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRP--DN-------ERDYGQEAIEILLQVMENN----RDDLVVILAG 176 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCC--C----------CCTHHHHHHHHHHHHHC----TTTCEEEEEE
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccC--CC-------cccccHHHHHHHHHHHhcC----CCCEEEEEeC
Confidence 32 33455566554 5789999999998641 10 1123456778888888863 3567888888
Q ss_pred CCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHH
Q 013083 353 NHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQI 401 (450)
Q Consensus 353 N~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei 401 (450)
|..+ .++|+|++ ||+.+|+|+.|+.+++..|++.++......+.++.
T Consensus 177 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp CHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred ChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7653 35799999 99999999999999999999999876544444433
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=2.9e-17 Score=160.85 Aligned_cols=218 Identities=16% Similarity=0.211 Sum_probs=141.1
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhh-CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC------
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRV-GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS------ 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~------ 280 (450)
+.++|.++.++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999988887644332211111 1123578999999999999999999999999999999987643
Q ss_pred --chhHHHHHhcC-------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc------CCCC
Q 013083 281 --NSDLRSLLLSM-------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC------CSEG 345 (450)
Q Consensus 281 --~~~L~~l~~~~-------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~------~~~~ 345 (450)
...++.++... ..++||+|||+|.+..... . .............|+..+++.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~----~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 168 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--Y----SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--C----CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTT
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--c----cccchhHHHHHHHHHHHhcCCeEecccccccCCc
Confidence 23466666544 2478999999999854110 0 000011122366788888764210 1235
Q ss_pred eEEEEE----cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC----CCCHHHHHH
Q 013083 346 RIIIFT----TNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV----NVTPAEVAG 417 (450)
Q Consensus 346 ~iiI~T----TN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~----~~spa~i~~ 417 (450)
.++|++ ++.+..++++|++ ||+.+|+|+.|+.+++..+++.... .+..+....+... .++++. .+
T Consensus 169 ~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~~~~~a-~~ 241 (310)
T 1ofh_A 169 ILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHA----SLTEQYKALMATEGVNIAFTTDA-VK 241 (310)
T ss_dssp CEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHHTTCEEEECHHH-HH
T ss_pred EEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHH----HHHHHHHHHHHhcCCeeccCHHH-HH
Confidence 677877 4677889999998 9999999999999999999985332 2223333333222 355544 44
Q ss_pred HHHHhc--------cCcHHHHHHHHHHHH
Q 013083 418 ELMKSK--------CKYAEISLQGIVKFL 438 (450)
Q Consensus 418 ~L~~~~--------~~~~~~al~~l~~~l 438 (450)
.|.++. ..++..+...+...+
T Consensus 242 ~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 242 KIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 454432 355655555544444
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.73 E-value=7.4e-19 Score=181.35 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=72.2
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCC-CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC-------
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGK-AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ------- 279 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~------- 279 (450)
+.++|+++.|+.+...+.....+...+...+. .+++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999998888766555554444332 3568999999999999999999999999999999987653
Q ss_pred -CchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE-cCCCCC
Q 013083 280 -SNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT-TNHKEK 357 (450)
Q Consensus 280 -~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T-TN~~~~ 357 (450)
....++.++..+. .++.+||++.+... ........+++.||+.|||+.+. +.+ +++ ||+++.
T Consensus 95 d~e~~lr~lf~~a~--~~~~~De~d~~~~~----------~~~~~e~rvl~~LL~~~dg~~~~---~~v-~a~~TN~~~~ 158 (444)
T 1g41_A 95 EVDSIIRDLTDSAM--KLVRQQEIAKNRAR----------AEDVAEERILDALLPPAKNQWGE---VEN-HDSHSSTRQA 158 (444)
T ss_dssp CTHHHHHHHHHHHH--HHHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHH--hcchhhhhhhhhcc----------chhhHHHHHHHHHHHHhhccccc---ccc-ccccccCHHH
Confidence 2345566665532 23447888765321 11234567899999999998653 223 444 999999
Q ss_pred CCccccCCCcceeEEEeCCCCHH-HHHHHH
Q 013083 358 LDPALLRPGRMDMHIHMSYCTAS-VFEQLA 386 (450)
Q Consensus 358 ld~aLlrpgR~d~~I~~~~p~~~-~r~~l~ 386 (450)
||+||+||||||.+|+++.|+.. .+.+++
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999999987 555554
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=8e-17 Score=148.62 Aligned_cols=153 Identities=14% Similarity=0.219 Sum_probs=117.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEec
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDL 275 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~ 275 (450)
...|.+|++++|.++.++.+.+.+.. . ...++||+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 67889999999999888877766532 1 12359999999999999999999986 456888888
Q ss_pred CccCCchhHHHHHhc--------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeE
Q 013083 276 TDVQSNSDLRSLLLS--------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRI 347 (450)
Q Consensus 276 ~~~~~~~~L~~l~~~--------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~i 347 (450)
+.......+...+.. ...+.+|+|||+|.+.. .....|+..++.. ..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~l~~~l~~~----~~~~~ 134 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------DAQAALRRTMEMY----SKSCR 134 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------HHHHHHHHHHHHT----TTTEE
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------HHHHHHHHHHHhc----CCCCe
Confidence 776554444433221 24688999999998732 2345566666543 35678
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 348 IIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 348 iI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+|+|||.++.+++++.+ |+. .++++.++.++...++..++.
T Consensus 135 ~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 89999999999999999 888 799999999999998887764
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=7.9e-17 Score=155.97 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=113.7
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---C----
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ---S---- 280 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~---~---- 280 (450)
+.+++..+..+.++........ .....+...++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~---~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH---HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH---HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4567777766666664322211 22223345568999999999999999999999999999999876531 1
Q ss_pred chhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCC
Q 013083 281 NSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKL 358 (450)
Q Consensus 281 ~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~l 358 (450)
...++.++..+ ..+++|+|||||.++... .. ........+..|+..+++... .+..++||+|||.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~--~~------~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYV--PI------GPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCB--TT------TTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccC--CC------ChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhc
Confidence 13456666653 468999999999986421 10 112234455666666665432 24567799999999888
Q ss_pred Cc-cccCCCcceeEEEeCCCCH-HHHHHHHHH
Q 013083 359 DP-ALLRPGRMDMHIHMSYCTA-SVFEQLAFN 388 (450)
Q Consensus 359 d~-aLlrpgR~d~~I~~~~p~~-~~r~~l~~~ 388 (450)
++ .+.+ ||+..|++|.++. ++...++..
T Consensus 181 ~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 181 QEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred chhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 87 5666 9999999988766 555555554
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.4e-16 Score=166.64 Aligned_cols=173 Identities=20% Similarity=0.315 Sum_probs=121.6
Q ss_pred CCcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcCh-hHHhhhCC---CCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 191 YGCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGK-EYYTRVGK---AWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 191 ~~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~-~~~~~~g~---~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...|.. ...|.+|++++|.++.++.+.+++..+.... ..|...|. +..+++||+||||||||++|+++|+++
T Consensus 26 ~~lW~e----kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 26 DKLWTV----KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCCHHH----HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCccc----ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 347876 7899999999999999999999887655322 22333333 256799999999999999999999999
Q ss_pred CCcEEEEecCccCCchhHHHHHh-------------cC-------CCceEEEEEcccccccccccCcccccCCCCCCchh
Q 013083 267 KFDIYDLDLTDVQSNSDLRSLLL-------------SM-------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKV 326 (450)
Q Consensus 267 ~~~~~~l~~~~~~~~~~L~~l~~-------------~~-------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~ 326 (450)
+.+++.+++++......+...+. .. ..+.||+|||+|.+.. ..+.
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---------------~~~~ 166 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------GDRG 166 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------TSTT
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------hhHH
Confidence 99999999998765443333222 22 4678999999998843 1122
Q ss_pred hHHhHHHHhhcccccCCCCeEEEEEcCCC--CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 327 TLSGLLNFIDGLWSCCSEGRIIIFTTNHK--EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 327 ~l~~LL~~ldg~~~~~~~~~iiI~TTN~~--~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
.+..|++.++.. ... ||++||.. ..++ .+.+ +...+.|+.|+.+++.+++...+..
T Consensus 167 ~l~~L~~~l~~~-----~~~-iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 167 GVGQLAQFCRKT-----STP-LILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp HHHHHHHHHHHC-----SSC-EEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCC-EEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 355666666542 222 34444433 3343 4544 4457999999999999888776643
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.70 E-value=6.1e-16 Score=144.23 Aligned_cols=155 Identities=20% Similarity=0.331 Sum_probs=117.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
...|..|++++|.+..++.+...+.. |. .++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------GR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------TC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 67888999999999988888776642 11 1357999999999999999999998743
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
.++.++.........++.++.... .+.+|+|||+|.+. ...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------~~~~~~ 145 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------RHSFNA 145 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------HHHHHH
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------HHHHHH
Confidence 344454443333445666666543 47899999999762 234566
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
|+..++.. +.+.++|++||.++.+++++.+ |+ ..++++.++.++..+++..++..
T Consensus 146 l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 146 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 77777653 3568889999999999999998 76 56999999999999999887754
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=5.7e-16 Score=155.85 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=123.3
Q ss_pred CCCCC-CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecCcc
Q 013083 202 KHPMN-FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLTDV 278 (450)
Q Consensus 202 ~~p~~-f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~~~ 278 (450)
.+|.. |++++|.+..++.+......... |...++++||+||||||||++|+++|+.++. +++.+++..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45665 99999999998876554433322 3334579999999999999999999999974 7777776542
Q ss_pred CC-------------------------------------------------------chhHHHHHhcC-------C----
Q 013083 279 QS-------------------------------------------------------NSDLRSLLLSM-------P---- 292 (450)
Q Consensus 279 ~~-------------------------------------------------------~~~L~~l~~~~-------~---- 292 (450)
.. ...++..+... .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 109 FSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp SCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---
T ss_pred hhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccc
Confidence 10 22333333221 1
Q ss_pred CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEc-----------CCCCCCCcc
Q 013083 293 SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTT-----------NHKEKLDPA 361 (450)
Q Consensus 293 ~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TT-----------N~~~~ld~a 361 (450)
.|+||+|||+|.+. ...++.|+..++.. ...+++++|. |.+..++++
T Consensus 189 ~~~vl~IDEi~~l~------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~ 246 (368)
T 3uk6_A 189 IPGVLFIDEVHMLD------------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPID 246 (368)
T ss_dssp CBCEEEEESGGGSB------------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHH
T ss_pred cCceEEEhhccccC------------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHH
Confidence 25799999999873 23556677766543 2234444443 347889999
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHH-HHHHHhcCC-CCHHHHHHHH
Q 013083 362 LLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQ-IEEMLMKVN-VTPAEVAGEL 419 (450)
Q Consensus 362 LlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~e-i~~l~~~~~-~spa~i~~~L 419 (450)
|++ ||.. ++|+.|+.+++..+++.++......+.++ ++.++.... .++.++...|
T Consensus 247 l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 247 LLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999 9987 89999999999999998876544444333 333333333 4555554444
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.68 E-value=3.1e-16 Score=147.23 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=125.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCc
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~ 277 (450)
+.++.+|+++++.+ ..+.+++.+..+...+ ..++++|+||||||||++++++|+.+. .+++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44457899999832 2234445555554432 257899999999999999999999874 7888888877
Q ss_pred cCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC-CCC
Q 013083 278 VQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN-HKE 356 (450)
Q Consensus 278 ~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN-~~~ 356 (450)
+.. .+...+.....+.+|+|||+|.+.. .......|+..++..... ....+|+||| .++
T Consensus 91 ~~~--~~~~~~~~~~~~~vliiDe~~~~~~----------------~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 91 HAS--ISTALLEGLEQFDLICIDDVDAVAG----------------HPLWEEAIFDLYNRVAEQ--KRGSLIVSASASPM 150 (242)
T ss_dssp GGG--SCGGGGTTGGGSSEEEEETGGGGTT----------------CHHHHHHHHHHHHHHHHH--CSCEEEEEESSCTT
T ss_pred HHH--HHHHHHHhccCCCEEEEeccccccC----------------CHHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHH
Confidence 632 1223334445689999999998732 111133445544443321 2232444444 443
Q ss_pred ---CCCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHHHH
Q 013083 357 ---KLDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEISL 431 (450)
Q Consensus 357 ---~ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~al 431 (450)
.+++++.+ |+. ..++++.|+.+++.+++..++.... ..+++.. .+.|.....+++..+.
T Consensus 151 ~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~-~~~l~~~~~g~~r~l~ 214 (242)
T 3bos_A 151 EAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRG-------------LQLPEDV-GRFLLNRMARDLRTLF 214 (242)
T ss_dssp TTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTT-------------CCCCHHH-HHHHHHHTTTCHHHHH
T ss_pred HHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHccCCHHHHH
Confidence 45688888 886 8899999999999999988764322 2344433 3445554455666655
Q ss_pred HHHHHHHHHHhhhhhcc
Q 013083 432 QGIVKFLHAKMNEQHKV 448 (450)
Q Consensus 432 ~~l~~~l~~~~~~~~~~ 448 (450)
+.+..+......+++.+
T Consensus 215 ~~l~~~~~~a~~~~~~I 231 (242)
T 3bos_A 215 DVLDRLDKASMVHQRKL 231 (242)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 55555554443333333
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=5.5e-16 Score=160.99 Aligned_cols=193 Identities=17% Similarity=0.216 Sum_probs=130.6
Q ss_pred cCCCCCCcccccChHHH---HHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc
Q 013083 201 LKHPMNFNTLALDSELK---KAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD 277 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k---~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~ 277 (450)
...|.+|++++|.+.++ +.+...+.. |. ..++|||||||||||++|++||+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 67899999999999887 455444431 11 258999999999999999999999999999999766
Q ss_pred cCCchhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEE
Q 013083 278 VQSNSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFT 351 (450)
Q Consensus 278 ~~~~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~T 351 (450)
. ....++.++..+ ..+.||||||||.+.. .....||..++. ..+++|++
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------~~q~~LL~~le~------~~v~lI~a 140 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------SQQDAFLPHIED------GTITFIGA 140 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------CCHHHHHT------TSCEEEEE
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------HHHHHHHHHHhc------CceEEEec
Confidence 4 344555555443 4689999999998732 123456666664 23455554
Q ss_pred c--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHHHHHhccCcHHH
Q 013083 352 T--NHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGELMKSKCKYAEI 429 (450)
Q Consensus 352 T--N~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~L~~~~~~~~~~ 429 (450)
| |....++++|++ |+. .+.++.|+.+++..++..++......+.. ....+++. +.+.|.+...+++..
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~------~~~~i~~~-al~~L~~~~~Gd~R~ 210 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGG------QDIVLPDE-TRRAIAELVNGDARR 210 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTT------SSEECCHH-HHHHHHHHHCSCHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhcc------ccCcCCHH-HHHHHHHHCCCCHHH
Confidence 4 444689999999 887 48899999999999999887643211100 11124443 344455445667776
Q ss_pred HHHHHHHHHHHH
Q 013083 430 SLQGIVKFLHAK 441 (450)
Q Consensus 430 al~~l~~~l~~~ 441 (450)
++..|...+...
T Consensus 211 lln~Le~a~~~a 222 (447)
T 3pvs_A 211 ALNTLEMMADMA 222 (447)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=4.1e-16 Score=153.01 Aligned_cols=163 Identities=13% Similarity=0.228 Sum_probs=119.9
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----C
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----K 267 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~ 267 (450)
.|.. ...|.+|++++|.++.++.+.+.+. . |. ..++||+||||||||++++++|+.+ +
T Consensus 6 ~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 68 (319)
T 2chq_A 6 IWVE----KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWR 68 (319)
T ss_dssp CTTT----TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHH
T ss_pred cHHH----hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCccc
Confidence 5655 7899999999999988887765442 2 11 2349999999999999999999987 4
Q ss_pred CcEEEEecCccCCchhHHH----HHhcC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc
Q 013083 268 FDIYDLDLTDVQSNSDLRS----LLLSM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW 339 (450)
Q Consensus 268 ~~~~~l~~~~~~~~~~L~~----l~~~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~ 339 (450)
.+++.+++++......++. ..... ..+.||+|||+|.+.. .....|+..++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~L~~~le~~- 129 (319)
T 2chq_A 69 DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------DAQAALRRTMEMY- 129 (319)
T ss_dssp HHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------------HHHHTTGGGTSSS-
T ss_pred CCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------------HHHHHHHHHHHhc-
Confidence 5688888887643333322 22121 3578999999998732 2344555555542
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 340 SCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 340 ~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
+...++|++||.++.+++++.+ |+. .++++.|+.+++..++..++...+..+
T Consensus 130 ---~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 130 ---SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp ---SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred ---CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4567889999999999999999 886 699999999999999988775544333
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=1.3e-16 Score=143.82 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=108.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
...|..|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34577899999999888877765432 124689999999999999999999997 7888
Q ss_pred EEEecCccCC--------chhHHHHHh---cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc
Q 013083 271 YDLDLTDVQS--------NSDLRSLLL---SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW 339 (450)
Q Consensus 271 ~~l~~~~~~~--------~~~L~~l~~---~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~ 339 (450)
+.+++..+.. ...+..++. ....+.||+|||+|.+..... ..........+...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~----------~~~~~~~~~~l~~~~~~-- 149 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK----------ADGAMDAGNMLKPALAR-- 149 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------CCCCHHHHHHHHHT--
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCc----------ccchHHHHHHHHHhhcc--
Confidence 9888776521 123444443 345688999999999854110 00111222333333322
Q ss_pred ccCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHH
Q 013083 340 SCCSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLA 386 (450)
Q Consensus 340 ~~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~ 386 (450)
.+..+|++||.++ .+++++++ ||+ .|+++.|+.+++.+++
T Consensus 150 ----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3566788888775 78999999 998 5999999999988764
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=2e-15 Score=160.53 Aligned_cols=160 Identities=20% Similarity=0.158 Sum_probs=112.7
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc-----
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN----- 281 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~----- 281 (450)
.++++|.+++++.+.+.+........ . .+..+||+||||||||+++++||+.++.++..++++.+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 45689999999888765543222211 1 24679999999999999999999999999999998875332
Q ss_pred ----------hhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc---------
Q 013083 282 ----------SDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC--------- 341 (450)
Q Consensus 282 ----------~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~--------- 341 (450)
..+...|..+. ...||+|||||.+... ......+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~--------------~~~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD--------------FRGDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh--------------hccCHHHHHHHHHhhhhcceeecccCCe
Confidence 22334455543 4459999999988531 0111345566666643211
Q ss_pred --CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q 013083 342 --CSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYL 390 (450)
Q Consensus 342 --~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 390 (450)
.-.+++||+|||.++.++|+|++ ||+ .|+++.|+.+++..|++.++
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01457899999999999999999 997 59999999999999999887
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=8.6e-17 Score=162.40 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=129.7
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHH-hhhCC-CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC------
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYY-TRVGK-AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS------ 280 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~-~~~g~-~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~------ 280 (450)
.++|.++.++.+...+.......... ...+. ..+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999999988886544322110 00111 24578999999999999999999999999999999988742
Q ss_pred --chhHHHHHhcC------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-----------
Q 013083 281 --NSDLRSLLLSM------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC----------- 341 (450)
Q Consensus 281 --~~~L~~l~~~~------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~----------- 341 (450)
...+..++... ..++||||||||.+... +.... .+.........+.||..|+|....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~--~~~~~--~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK--SDNPS--ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC--SSCC-----CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc--ccccc--cccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 23455666554 25789999999988641 11110 000111123788899999954210
Q ss_pred ------CCCCeEEEEEcCCC----------CC-----------------------------------CCccccCCCccee
Q 013083 342 ------CSEGRIIIFTTNHK----------EK-----------------------------------LDPALLRPGRMDM 370 (450)
Q Consensus 342 ------~~~~~iiI~TTN~~----------~~-----------------------------------ld~aLlrpgR~d~ 370 (450)
...++++|+|+|.. .. +.|+|+. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 11234555555532 11 6888888 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC----CCCHHHHHHHHHH
Q 013083 371 HIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV----NVTPAEVAGELMK 421 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~----~~spa~i~~~L~~ 421 (450)
++.++.|+.+.+..|+...+. .+...+...+... .++++ +.+.|..
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~----~l~~~~~~~~~~~~~~l~~~~~-a~~~L~~ 299 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKN----ALTKQYQALFNLEGVDLEFRDE-ALDAIAK 299 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHTTTCEEEECHH-HHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhcCceEEECHH-HHHHHHH
Confidence 999999999999999886332 2334444444332 34554 4455553
No 48
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.9e-15 Score=148.87 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=119.8
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---- 267 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---- 267 (450)
..|.. ...|.+|++++|.++.++.+...+.. |. ..++||+||||||||++++++|+.+.
T Consensus 13 ~~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 13 KPWVE----KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp SCHHH----HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred Cchhh----ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 35766 78999999999999988887766542 11 23599999999999999999999863
Q ss_pred -CcEEEEecCccCCchhHHHH----HhcC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 268 -FDIYDLDLTDVQSNSDLRSL----LLSM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 268 -~~~~~l~~~~~~~~~~L~~l----~~~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
.+++.+++++......++.. .... ..+.||+|||+|.+.. .....|+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~L~~~le~~ 137 (327)
T 1iqp_A 76 RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------------DAQQALRRTMEMF 137 (327)
T ss_dssp HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------------HHHHHHHHHHHHT
T ss_pred cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------------HHHHHHHHHHHhc
Confidence 35788887765332233322 2222 3578999999998732 2456677777653
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC
Q 013083 339 WSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH 394 (450)
Q Consensus 339 ~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 394 (450)
+.+..+|++||.++.+++++.+ |+. .++++.++.++...++...+...+
T Consensus 138 ----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 138 ----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred ----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence 3567888899999999999998 887 699999999999998888765443
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=5.1e-15 Score=145.25 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=117.1
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L 284 (450)
+.++|.+..++.+...+......-. .. ..+..++||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~-~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DP-NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CT-TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CC-CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4578999999998888876532110 00 1123479999999999999999999998 567999999887554333
Q ss_pred HHHHhc------------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCC---
Q 013083 285 RSLLLS------------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCS--- 343 (450)
Q Consensus 285 ~~l~~~------------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~--- 343 (450)
..++.. ...++||+|||+|.+. ......|+..++.......
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------------~~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------------PDVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------------HHHHHHHHHHHHHSEEECTTSC
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------------HHHHHHHHHHHhcCEEEcCCCC
Confidence 333311 1235899999999773 2456777777765321111
Q ss_pred ----CCeEEEEEcCC--------------------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 344 ----EGRIIIFTTNH--------------------------KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 344 ----~~~iiI~TTN~--------------------------~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+.++|+|||. ...++++|++ ||+..+.+++|+.+++..|+..++.
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 35789999998 4578899998 9999999999999999999998874
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=9.5e-15 Score=146.73 Aligned_cols=181 Identities=18% Similarity=0.266 Sum_probs=128.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
...|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 67899999999999988887776642 1 12357999999999999999999998853
Q ss_pred ------------cEEEEecCccCCchhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 269 ------------DIYDLDLTDVQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 269 ------------~~~~l~~~~~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
+++.++.........++.++.... .+.||+|||+|.+. ....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------~~~~~~ 138 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------RHSFNA 138 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------------HHHHHH
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------------HHHHHH
Confidence 345555543333345666655432 46899999999773 234667
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCcHH-HHHHHHhcCC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHLFE-QIEEMLMKVN 409 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-ei~~l~~~~~ 409 (450)
|+..++.. +...++|++|+.++.+.+++.+ |+ ..++++.|+.++...++..++...+..+.+ .++.++...+
T Consensus 139 Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~ 211 (373)
T 1jr3_A 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 (373)
T ss_dssp HHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSS
T ss_pred HHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 77777653 4568889999999999999998 77 569999999999999998887544333322 2333444444
Q ss_pred CCHHHHHHH
Q 013083 410 VTPAEVAGE 418 (450)
Q Consensus 410 ~spa~i~~~ 418 (450)
-.+.++...
T Consensus 212 G~~r~~~~~ 220 (373)
T 1jr3_A 212 GSLRDALSL 220 (373)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 445444433
No 51
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.4e-15 Score=146.69 Aligned_cols=159 Identities=14% Similarity=0.243 Sum_probs=119.6
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----- 266 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----- 266 (450)
..|.. ...|.+|++++|.++.++.+...+. . |.. ..+||+||||||||++++++|+.+
T Consensus 9 ~~~~~----~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 9 LPWVE----KYRPQVLSDIVGNKETIDRLQQIAK----D-------GNM--PHMIISGMPGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCHHH----HTCCSSGGGCCSCTHHHHHHHHHHH----S-------CCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGH
T ss_pred CcHHH----hcCCCCHHHHHCCHHHHHHHHHHHH----c-------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 35665 6789999999999998888776653 1 111 239999999999999999999986
Q ss_pred CCcEEEEecCccCCchhHHHHHhc-------C-C-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhc
Q 013083 267 KFDIYDLDLTDVQSNSDLRSLLLS-------M-P-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDG 337 (450)
Q Consensus 267 ~~~~~~l~~~~~~~~~~L~~l~~~-------~-~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg 337 (450)
+.+++.+++++..+...++.++.. . . .+.||+|||+|.+.. .....|+..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------~~~~~L~~~le~ 133 (323)
T 1sxj_B 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------------GAQQALRRTMEL 133 (323)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------------HHHHTTHHHHHH
T ss_pred cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------------HHHHHHHHHHhc
Confidence 456888888775444555544432 1 2 378999999998732 234556666654
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 338 LWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 338 ~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
. +.+.++|++||.++.+++++.+ |+. .++++.|+.++...++...+..
T Consensus 134 ~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 134 Y----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp T----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred c----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 2 3567888899999999999999 776 6999999999999999877643
No 52
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=2.1e-15 Score=150.36 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=117.6
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---- 267 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---- 267 (450)
..|.. ..+|.+|++++|.++.++.+...+ ... . ..++||+||||||||++++++|+.++
T Consensus 25 ~~~~~----k~~p~~~~~i~g~~~~~~~l~~~l----~~~-------~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 87 (353)
T 1sxj_D 25 QPWVE----KYRPKNLDEVTAQDHAVTVLKKTL----KSA-------N--LPHMLFYGPPGTGKTSTILALTKELYGPDL 87 (353)
T ss_dssp -CHHH----HTCCSSTTTCCSCCTTHHHHHHHT----TCT-------T--CCCEEEECSTTSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHH----hcCCCCHHHhhCCHHHHHHHHHHH----hcC-------C--CCEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 36766 779999999999999887766544 221 1 13499999999999999999999864
Q ss_pred --CcEEEEecCccCCchhHHHHH---hc---------------CCCceEEEEEcccccccccccCcccccCCCCCCchhh
Q 013083 268 --FDIYDLDLTDVQSNSDLRSLL---LS---------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVT 327 (450)
Q Consensus 268 --~~~~~l~~~~~~~~~~L~~l~---~~---------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~ 327 (450)
..+..+++++......++..+ .. ...+.||+|||+|.+.. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------------~~ 149 (353)
T 1sxj_D 88 MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------------DA 149 (353)
T ss_dssp HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------------HH
T ss_pred cccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------------HH
Confidence 468888887754333332221 11 13457999999998732 23
Q ss_pred HHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCcc
Q 013083 328 LSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGIS 393 (450)
Q Consensus 328 l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 393 (450)
.+.|+..++.. .....+|++||+++.+++++++ |+. .++++.++.++...++...+...
T Consensus 150 ~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 150 QSALRRTMETY----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp HHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHh
Confidence 46677777654 2346677889999999999999 887 69999999999998888876543
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=6.4e-15 Score=148.09 Aligned_cols=160 Identities=17% Similarity=0.178 Sum_probs=114.6
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecC
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLT 276 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~ 276 (450)
.++.++|.++..+.+...+...+.. ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4588999999888887766544332 125689999999999999999999998 8889999987
Q ss_pred ccCCc----------------------hh-HHHH---HhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 277 DVQSN----------------------SD-LRSL---LLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 277 ~~~~~----------------------~~-L~~l---~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
...+. .. +..+ +.....+.||+|||+|.+.. ....+..+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~-------------~~~~~~~l~~ 154 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK-------------RPGGQDLLYR 154 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH-------------STTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc-------------cCCCChHHHh
Confidence 64321 11 2222 22234578999999998853 0012345666
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCC---CCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRMDM-HIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+++.++.... +.+.++|++||.+ +.+++++.+ |+.. .++|+.++.++..+++...+.
T Consensus 155 l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 155 ITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred HhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 6665543210 2457888999887 788999999 8875 899999999999999998764
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=9.9e-15 Score=145.06 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=111.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCch
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNS 282 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~ 282 (450)
.|..++.++|.++.++.+...+.. +.++||+||||||||++++++|+.++.+++.++++......
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 344578899999888877665532 25899999999999999999999999999999885332222
Q ss_pred hHHHH--Hh-------cCC---CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc-------cccCC
Q 013083 283 DLRSL--LL-------SMP---SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL-------WSCCS 343 (450)
Q Consensus 283 ~L~~l--~~-------~~~---~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~-------~~~~~ 343 (450)
.+... +. ... ..+||+|||+|.+. ....+.|+..|+.. ....+
T Consensus 87 ~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~------------------~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 87 DLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP------------------AKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp HHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC------------------HHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred hcCCceeecCCCCceEeccCcccccEEEEEccccCC------------------HHHHHHHHHHHhcCceeeCCEEEECC
Confidence 22110 00 001 13799999999763 23556667666532 11123
Q ss_pred CCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 344 EGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 344 ~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
...++|+|+|..+ .++++|++ ||+.++++++|+.+++.+|++.....
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 4567778888553 38999999 99999999999999999999998764
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.60 E-value=4.3e-14 Score=143.14 Aligned_cols=174 Identities=19% Similarity=0.250 Sum_probs=114.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhH------------------HhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEY------------------YTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~------------------~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
+.++|+++.|+.|...+......... +.. ......++||+||||||||++|+++|+.++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34799999999998877544332221 011 12235689999999999999999999999999
Q ss_pred EEEEecCccCC--------chhHHHHHhcCC------CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHh
Q 013083 270 IYDLDLTDVQS--------NSDLRSLLLSMP------SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFI 335 (450)
Q Consensus 270 ~~~l~~~~~~~--------~~~L~~l~~~~~------~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 335 (450)
++.++++.+.. ...+..++.... .++||+|||||.+... +.... ...+.........|+..|
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~--~~~~~--~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 100 IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL--SENRS--ITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------------CHHHHHHHHHHH
T ss_pred EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh--cCCCc--eecccchHHHHHHHHHHh
Confidence 99999988631 233455554432 5789999999998541 11100 001112233678888888
Q ss_pred hcccc----c-------------CCCCeEEEEEcCC-----------------------------------------CCC
Q 013083 336 DGLWS----C-------------CSEGRIIIFTTNH-----------------------------------------KEK 357 (450)
Q Consensus 336 dg~~~----~-------------~~~~~iiI~TTN~-----------------------------------------~~~ 357 (450)
++..- . ...++++|+|||. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 86420 0 0134577777762 113
Q ss_pred CCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q 013083 358 LDPALLRPGRMDMHIHMSYCTASVFEQLAFN 388 (450)
Q Consensus 358 ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 388 (450)
+.|+|+. |++..+.|+.++.++...++..
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 5677777 9999999999999998888874
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=4.4e-15 Score=147.31 Aligned_cols=167 Identities=15% Similarity=0.238 Sum_probs=108.8
Q ss_pred cCCCCCCcccc-cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 201 LKHPMNFNTLA-LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 201 ~~~p~~f~~l~-~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
+.+..+|++++ |.... . ....+......+. ....+++||||||||||++++++|+++ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~-a~~~~~~~~~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-L-AYEVVKEALENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-H-HHHHHHHHHHTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-H-HHHHHHHHHhCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44556899997 43322 1 1223444443321 124689999999999999999999999 8999999987
Q ss_pred ccCCc-------hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEE
Q 013083 277 DVQSN-------SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIII 349 (450)
Q Consensus 277 ~~~~~-------~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI 349 (450)
++... ..+..+.....++.+|+|||+|.+.. .......++..++.... .+.++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~----------------~~~~~~~l~~~l~~~~~--~~~~iii 136 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG----------------KERTQIEFFHIFNTLYL--LEKQIIL 136 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT----------------CHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC----------------ChHHHHHHHHHHHHHHH--CCCeEEE
Confidence 65210 01111122223588999999998742 11123344444444332 2345666
Q ss_pred EEcCCCC---CCCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhCccCCCc
Q 013083 350 FTTNHKE---KLDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLGISHHHL 397 (450)
Q Consensus 350 ~TTN~~~---~ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l 397 (450)
++++.+. .++++|++ ||+ ..++++. +.+++..++..++......+
T Consensus 137 ~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l 186 (324)
T 1l8q_A 137 ASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL 186 (324)
T ss_dssp EESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC
T ss_pred EecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC
Confidence 6666665 68999999 886 7799999 99999999998875444334
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-14 Score=142.68 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=132.7
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEEEEecCccC
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIYDLDLTDVQ 279 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~~l~~~~~~ 279 (450)
|.+-++..+.|...+...+... .+.+++||||||||||++++++++++ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~---------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSS---------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 4455566666666666555432 25789999999999999999999998 4678889987653
Q ss_pred C----------------------chhHHHHHhcC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHH
Q 013083 280 S----------------------NSDLRSLLLSM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLN 333 (450)
Q Consensus 280 ~----------------------~~~L~~l~~~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 333 (450)
+ ...+.++|... ..+.||+|||+|.+. .+..+..|++
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----------------~q~~L~~l~~ 155 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----------------SEKILQYFEK 155 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----------------CTHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----------------cchHHHHHHh
Confidence 2 23456666654 357899999999883 2345555665
Q ss_pred HhhcccccCCCCeEEEEEcCCCCC----CCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhCccCCCcH----------
Q 013083 334 FIDGLWSCCSEGRIIIFTTNHKEK----LDPALLRPGRMD-MHIHMSYCTASVFEQLAFNYLGISHHHLF---------- 398 (450)
Q Consensus 334 ~ldg~~~~~~~~~iiI~TTN~~~~----ld~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~~~~~~l~---------- 398 (450)
.... .....+||+++|..+. |++++.+ ||. ..|+|+.++.++..+|+++.+.......+
T Consensus 156 ~~~~----~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~ 229 (318)
T 3te6_A 156 WISS----KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMT 229 (318)
T ss_dssp HHHC----SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEE
T ss_pred cccc----cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 4321 1345788899998864 4556677 886 57999999999999999987753211100
Q ss_pred ------H-HHHHHHhc------CCCCHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHhhh
Q 013083 399 ------E-QIEEMLMK------VNVTPAEVAGELMK---SKCKYAEISLQGIVKFLHAKMNE 444 (450)
Q Consensus 399 ------~-ei~~l~~~------~~~spa~i~~~L~~---~~~~~~~~al~~l~~~l~~~~~~ 444 (450)
+ .-+. .+. ..++++-| +.+-+ ...+|++.||+.+-.+.+....+
T Consensus 230 ~~~~~~~~~~~~-~~~~~~~~~~~i~~~ai-~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 230 IYNNIREGQNQK-IPDNVIVINHKINNKIT-QLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp ECCCC---------CTTEEEECEECCHHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccccccCHHHH-HHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 0 0000 000 02344443 33333 45789999999988888766553
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.2e-14 Score=146.57 Aligned_cols=151 Identities=14% Similarity=0.239 Sum_probs=111.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----------CCcEEEEecC
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----------KFDIYDLDLT 276 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----------~~~~~~l~~~ 276 (450)
++++|.++..+.+.+.+..+.... .+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~---------~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNE---------VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTC---------CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---------CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 789999999999998887776532 14689999999999999999999998 8999999977
Q ss_pred ccC-Cc-----------------------hh-HHHHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhh-HH
Q 013083 277 DVQ-SN-----------------------SD-LRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVT-LS 329 (450)
Q Consensus 277 ~~~-~~-----------------------~~-L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~-l~ 329 (450)
... +. .. +..++.... .+.||+|||+|.+.. ...... +.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~--------------~~~~~~~l~ 156 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK--------------RRGGDIVLY 156 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH--------------STTSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc--------------CCCCceeHH
Confidence 543 21 11 222222222 233999999998843 101223 33
Q ss_pred hHHHHhhcccccCCCCeEEEEEcCCC---CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 330 GLLNFIDGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 330 ~LL~~ldg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.|+... .+..+|+|||.+ +.+++++.+ ||...++|+.++.++..+++..++.
T Consensus 157 ~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 157 QLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 443322 457888999887 788999998 8877999999999999999998774
No 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.5e-14 Score=143.08 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=110.2
Q ss_pred cccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-C----
Q 013083 193 CWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-K---- 267 (450)
Q Consensus 193 ~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-~---- 267 (450)
.|.. .++|.+|++++|.++..+.+...+. .. |.. +. ++|+|||||||||+++++|+.+ +
T Consensus 3 ~w~~----kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 3 LWVD----KYRPKSLNALSHNEELTNFLKSLSD---QP-------RDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp -CTT----TTCCCSGGGCCSCHHHHHHHHTTTT---CT-------TCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred cchh----ccCCCCHHHhcCCHHHHHHHHHHHh---hC-------CCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 4765 7899999999999887766544330 21 111 23 9999999999999999999964 1
Q ss_pred ------------------------CcEEEEecCccCCch--hHHHHHhc----------------CCCceEEEEEccccc
Q 013083 268 ------------------------FDIYDLDLTDVQSNS--DLRSLLLS----------------MPSRSMLVIEDIDCS 305 (450)
Q Consensus 268 ------------------------~~~~~l~~~~~~~~~--~L~~l~~~----------------~~~~sIlviDdiD~l 305 (450)
.+++.++.+...... .+++.+.. ..++.||+|||++.+
T Consensus 67 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146 (354)
T ss_dssp C------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred eEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence 123344443322111 24444322 225679999999975
Q ss_pred ccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHH
Q 013083 306 ITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQL 385 (450)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l 385 (450)
- ......|+..++.. ..+..+|++||.++.+.+++++ |+ ..++|+.|+.++...+
T Consensus 147 ~------------------~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~ 201 (354)
T 1sxj_E 147 T------------------KDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTI 201 (354)
T ss_dssp C------------------HHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred C------------------HHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHH
Confidence 2 23456677777653 2457889999999999999999 88 6799999999999999
Q ss_pred HHHHhCcc
Q 013083 386 AFNYLGIS 393 (450)
Q Consensus 386 ~~~~l~~~ 393 (450)
+...+..+
T Consensus 202 l~~~~~~~ 209 (354)
T 1sxj_E 202 LSDVVTNE 209 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 98877543
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=2.9e-14 Score=142.06 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=101.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC------------
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF------------ 268 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~------------ 268 (450)
...|.+|++++|.+..++.+...+ + .+ ...++||+||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~---~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA---V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH---H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh---h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 346778999999998766542221 1 11 1357999999999999999999999863
Q ss_pred ---------------------cEEEEecCccCCchh------HHHHHhcC-----------CCceEEEEEcccccccccc
Q 013083 269 ---------------------DIYDLDLTDVQSNSD------LRSLLLSM-----------PSRSMLVIEDIDCSITLEN 310 (450)
Q Consensus 269 ---------------------~~~~l~~~~~~~~~~------L~~l~~~~-----------~~~sIlviDdiD~l~~~~~ 310 (450)
+++.+..+. +... +...+... ..++||+|||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--- 158 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--- 158 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---
T ss_pred ccccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---
Confidence 122221111 1111 12222111 1378999999998732
Q ss_pred cCcccccCCCCCCchhhHHhHHHHhhcc----ccc-----CCCCeEEEEEcCCCC-CCCccccCCCcceeEEEeCCC-CH
Q 013083 311 RDSKDQAGHNQGDNKVTLSGLLNFIDGL----WSC-----CSEGRIIIFTTNHKE-KLDPALLRPGRMDMHIHMSYC-TA 379 (450)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~LL~~ldg~----~~~-----~~~~~iiI~TTN~~~-~ld~aLlrpgR~d~~I~~~~p-~~ 379 (450)
.....|+..++.- ... .+...++|+|||..+ .++++|++ ||+.++++++| +.
T Consensus 159 ---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 159 ---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDV 221 (350)
T ss_dssp ---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSH
T ss_pred ---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcH
Confidence 3455666666531 111 012578889999754 89999999 99999999999 67
Q ss_pred HHHHHHHHHHh
Q 013083 380 SVFEQLAFNYL 390 (450)
Q Consensus 380 ~~r~~l~~~~l 390 (450)
+.+..|++..+
T Consensus 222 ~~~~~il~~~~ 232 (350)
T 1g8p_A 222 ETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77778887744
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=1.3e-13 Score=137.62 Aligned_cols=191 Identities=17% Similarity=0.207 Sum_probs=131.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQS 280 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~ 280 (450)
...|.+|+.++|.+.+++.+...+..... .|.+ ...++|+||||||||||++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~-~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEV-LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCC-CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCC-CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 56788999999988776666554432211 1222 357999999999999999999999999888777666655
Q ss_pred chhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc------cc--------CCCCe
Q 013083 281 NSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW------SC--------CSEGR 346 (450)
Q Consensus 281 ~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~------~~--------~~~~~ 346 (450)
...+..++.....+.|++|||++.+.. .....|+..+.... .. .-...
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~------------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK------------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH------------------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH------------------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 666777766666788999999998742 11222233332110 00 00234
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccCCCc-HHHHHHHHhcCCCCHHHHHHHH
Q 013083 347 IIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISHHHL-FEQIEEMLMKVNVTPAEVAGEL 419 (450)
Q Consensus 347 iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~ei~~l~~~~~~spa~i~~~L 419 (450)
.++.+|+.+..|++++++ ||...+.+++++.+++.++++.........+ .+.+..++....-+|..+...|
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 667789999999999999 9999999999999999999988764433333 2334555555556666554444
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.57 E-value=6.2e-14 Score=134.92 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=101.8
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCccCCc
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDVQSN 281 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~~~~ 281 (450)
.+|++++|.+...+.+.+.+...... ..++||+||||||||++|+++++.+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 36899999999999998888765432 36899999999999999999999985 68999999987422
Q ss_pred hhHH-HHHhc-----------------CCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-c--
Q 013083 282 SDLR-SLLLS-----------------MPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-S-- 340 (450)
Q Consensus 282 ~~L~-~l~~~-----------------~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~-- 340 (450)
.+. .+|.. ...+++|+|||||.+.. .....|+..++... .
T Consensus 72 -~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------~~q~~Ll~~l~~~~~~~~ 132 (265)
T 2bjv_A 72 -LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------MVQEKLLRVIEYGELERV 132 (265)
T ss_dssp -HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------HHHHHHHHHHHHCEECCC
T ss_pred -HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------HHHHHHHHHHHhCCeecC
Confidence 222 22211 12467999999998732 23455666665321 0
Q ss_pred ----cCCCCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHh
Q 013083 341 ----CCSEGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCTA--SVFEQLAFNYL 390 (450)
Q Consensus 341 ----~~~~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l 390 (450)
....+..+|+|||.. ..++++|.+ ||. ..|++|.... +....++.+++
T Consensus 133 g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 133 GGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred CCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 001346788888874 357889998 996 4667776654 55666777665
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=3.2e-15 Score=134.50 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=102.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
...|.+|++++|.++..+.+.+.+.. ...+++||+||||||||++++++|+.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34578899999999887777665521 124689999999999999999999997 7888
Q ss_pred EEEecCccCC--------chhHHHHHh---cCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc
Q 013083 271 YDLDLTDVQS--------NSDLRSLLL---SMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW 339 (450)
Q Consensus 271 ~~l~~~~~~~--------~~~L~~l~~---~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~ 339 (450)
+.+++..+.. ...+..++. ....+.+|+|||+|.+..... . ..........|...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~--~-------~~~~~~~~~~l~~~~~~-- 150 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGA--V-------AEGALDAGNILKPMLAR-- 150 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSS--S-------CTTSCCTHHHHHHHHHT--
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccc--c-------cccchHHHHHHHHHHhc--
Confidence 8888765421 122444433 334678999999999853110 0 01112334444444432
Q ss_pred ccCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCC
Q 013083 340 SCCSEGRIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCT 378 (450)
Q Consensus 340 ~~~~~~~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~ 378 (450)
...++|++||.++ .+++++++ ||+. |+++.|+
T Consensus 151 ----~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 ----GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4567888888765 68999999 9996 9999885
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=2.6e-14 Score=148.22 Aligned_cols=161 Identities=16% Similarity=0.252 Sum_probs=105.3
Q ss_pred cCCCCCCcccc-cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEe
Q 013083 201 LKHPMNFNTLA-LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLD 274 (450)
Q Consensus 201 ~~~p~~f~~l~-~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~ 274 (450)
+.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 34445899987 543322 233343444332 11 4689999999999999999999998 88899998
Q ss_pred cCccCCc-------hhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCe
Q 013083 275 LTDVQSN-------SDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGR 346 (450)
Q Consensus 275 ~~~~~~~-------~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~ 346 (450)
+..+... .....+..... ++.||+|||+|.+.. .......|+..++.+.. .+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~----------------~~~~q~~l~~~l~~l~~--~~~~ 229 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG----------------KTGVQTELFHTFNELHD--SGKQ 229 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS----------------CHHHHHHHHHHHHHHHT--TTCE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC----------------ChHHHHHHHHHHHHHHH--CCCe
Confidence 8765210 01112222234 789999999998742 11223345555544332 2334
Q ss_pred EEEEEcCCCCC---CCccccCCCcce--eEEEeCCCCHHHHHHHHHHHhC
Q 013083 347 IIIFTTNHKEK---LDPALLRPGRMD--MHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 347 iiI~TTN~~~~---ld~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+||.|.+.+.. ++++|++ ||. ..+.++.|+.+++..++...+.
T Consensus 230 iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 55544444543 8899999 886 7799999999999999998774
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=2.5e-13 Score=136.82 Aligned_cols=159 Identities=15% Similarity=0.078 Sum_probs=116.2
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCccCCc
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDVQSN 281 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~~~~ 281 (450)
.++.++|.++..+.+...+...+.... +..++++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 348899999999999988877665321 111389999999999999999999998 678899997765431
Q ss_pred hh--------------------------HHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHh
Q 013083 282 SD--------------------------LRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFI 335 (450)
Q Consensus 282 ~~--------------------------L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 335 (450)
.. +...+.....+.||+|||+|.+. ...+..|+..+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------------------PDILSTFIRLG 149 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc------------------hHHHHHHHHHH
Confidence 11 11222233457899999999761 23566677766
Q ss_pred hcccccCCCCeEEEEEcCCC---CCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhC
Q 013083 336 DGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRMDM-HIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 336 dg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+........+..+|++||.+ +.+++.+.+ |+.. .++++.++.++..+++...+.
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 54321101367888999888 678888888 8875 799999999999999988764
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=6.9e-14 Score=140.32 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=114.0
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc------CCcEEEEecCcc
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL------KFDIYDLDLTDV 278 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l------~~~~~~l~~~~~ 278 (450)
..++.++|.++..+.+.+.+...+.. ..++.++|+||||||||++++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34588999998888887766544332 124689999999999999999999998 889999986542
Q ss_pred CC----------------------chh----HHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHH
Q 013083 279 QS----------------------NSD----LRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLL 332 (450)
Q Consensus 279 ~~----------------------~~~----L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL 332 (450)
.+ ... +...+.....+.||+|||+|.+.. ......+..|+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~--------------~~~~~~l~~l~ 153 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK--------------KYNDDILYKLS 153 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH--------------SSCSTHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc--------------cCcCHHHHHHh
Confidence 11 111 222333334589999999998853 11134677777
Q ss_pred HHhhcccccCCCCeEEEEEcCCC---CCCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhC
Q 013083 333 NFIDGLWSCCSEGRIIIFTTNHK---EKLDPALLRPGRMD-MHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 333 ~~ldg~~~~~~~~~iiI~TTN~~---~~ld~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
..++.. ...+..+|++||.+ +.+++++.+ |+. ..++++.++.++..+++...+.
T Consensus 154 ~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 154 RINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred hchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 777654 13467888888877 567888888 665 4899999999999999998764
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=2.4e-13 Score=149.95 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=115.3
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCC----CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCc--
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA----WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSN-- 281 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~-- 281 (450)
+.++|.++.++.+...+..... |.. +..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~--------g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA--------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT--------TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 3477888888777776654321 221 22369999999999999999999999999999999887431
Q ss_pred -----------------hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC--
Q 013083 282 -----------------SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC-- 342 (450)
Q Consensus 282 -----------------~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~-- 342 (450)
..+...+.. ..++||+|||||.+- ...++.|+..||.-.-..
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------~~~~~~Ll~~le~~~~~~~~ 590 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH------------------PDVFNILLQVMDNGTLTDNN 590 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC------------------HHHHHHHHHHHHHSEEEETT
T ss_pred HhhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC------------------HHHHHHHHHHhcCcEEEcCC
Confidence 123333433 347999999999762 246778888887422110
Q ss_pred -----CCCeEEEEEcCCCC-------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 343 -----SEGRIIIFTTNHKE-------------------------KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 343 -----~~~~iiI~TTN~~~-------------------------~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
-.+.+||+|||... .++|+|++ ||+.+|.|+.++.+++..|+..++.
T Consensus 591 g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 591 GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 13578999999754 57889998 9999999999999999999998874
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=5.6e-14 Score=155.08 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=115.4
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCc---
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSN--- 281 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~--- 281 (450)
+.++|.++.++.+.+.+......-. ..+ .+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~~~-~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---DPK-RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---CTT-SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---CCC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5688999999888888865542210 000 111269999999999999999999998 789999999988532
Q ss_pred --hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc-------CCCCeEEEEEc
Q 013083 282 --SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC-------CSEGRIIIFTT 352 (450)
Q Consensus 282 --~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~-------~~~~~iiI~TT 352 (450)
..+...+.. ..++||+|||||.+. ...++.|+..|+.-.-. ...+.+||+||
T Consensus 567 ~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 567 SGGQLTEKVRR-KPYSVVLLDAIEKAH------------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp C---CHHHHHH-CSSSEEEEECGGGSC------------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccchhhHHHHh-CCCeEEEEeCccccC------------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 233333333 357899999998762 34677888888753211 12356899999
Q ss_pred CCCCC------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 353 NHKEK------------LDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 353 N~~~~------------ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
|.+.. +.|+|+. ||+.+|.|++|+.+++..|+..++.
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 97654 7888988 9999999999999999999998874
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=9.4e-14 Score=145.09 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=107.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
...|..|+.++|.++..+.++..+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45788899999999998888776542 124689999999999999999999997 7889
Q ss_pred EEEecCcc---CCchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCC
Q 013083 271 YDLDLTDV---QSNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEG 345 (450)
Q Consensus 271 ~~l~~~~~---~~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~ 345 (450)
+.++++.- .....++.++..+ ..++||||| .. . ...+.|+..++ .+.
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--------------~---~a~~~L~~~L~------~g~ 291 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------I---DASNILKPSLA------RGE 291 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------CCCTT------SSS
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--------------h---hHHHHHHHhhc------CCC
Confidence 99988721 1234566666544 357899999 10 0 01222333332 246
Q ss_pred eEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 346 RIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 346 ~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
+.+|++||.++ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 78899999887 68999999 9986 999999999999999988765
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=8.1e-14 Score=139.24 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=115.2
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---- 267 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---- 267 (450)
..|.. ...|.+|++++|.+.+++.+...+. . |.. .++||+||||||||++++++|+.+.
T Consensus 13 ~~~~~----k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 13 LPWVE----KYRPETLDEVYGQNEVITTVRKFVD----E-------GKL--PHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCHHH----HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TCC--CCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CchHH----HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35766 7899999999999877776655443 2 211 2399999999999999999999873
Q ss_pred -CcEEEEecCccCCchhHHHHHh----cC----CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcc
Q 013083 268 -FDIYDLDLTDVQSNSDLRSLLL----SM----PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGL 338 (450)
Q Consensus 268 -~~~~~l~~~~~~~~~~L~~l~~----~~----~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~ 338 (450)
..+..++.++......+++.+. .. ..+.|++|||+|.+.. ...+.|+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------------~~~~~L~~~le~~ 137 (340)
T 1sxj_C 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------------AAQNALRRVIERY 137 (340)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------------HHHHHHHHHHHHT
T ss_pred cceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------------HHHHHHHHHHhcC
Confidence 3477777776544444443332 11 2478999999998732 2345677777653
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 339 WSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 339 ~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+....+|++||.+..+.+++++ |+. .+.++.++.++....+...+.
T Consensus 138 ----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 138 ----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 3456788889999999999999 886 589999999888888877663
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=1.8e-13 Score=152.99 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=105.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcEE
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDIY 271 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~~ 271 (450)
..|..|+.++|.++..+.+++.+. . ..++++||+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 467889999999988887777552 1 124689999999999999999999998 88999
Q ss_pred EEecCccCC--------chhHHHHHhcC---CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 272 DLDLTDVQS--------NSDLRSLLLSM---PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 272 ~l~~~~~~~--------~~~L~~l~~~~---~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
.++++.+.. ...+..++..+ ..++||||||+|.+.+.... .......+.|...++.
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~----------~g~~~~~~~L~~~l~~--- 297 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA----------EGAVDAGNMLKPALAR--- 297 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------------HHHHHT---
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc----------cchHHHHHHHHHHHhC---
Confidence 999888732 23456665544 36789999999998642111 0011222333333332
Q ss_pred cCCCCeEEEEEcCCCC----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 341 CCSEGRIIIFTTNHKE----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~~----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+..+|++||.++ .+|++|+| ||+. |.++.|+.+++.++++.++.
T Consensus 298 ---~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 ---GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp ---TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred ---CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3466788888764 47999999 9997 99999999999999987664
No 72
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=8.2e-14 Score=122.26 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=91.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHH
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLR 285 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~ 285 (450)
.++|.....+.+.+.+...... ..++||+||||||||++|+++++.. +.+++ ++|+.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 4678888888888888766432 4579999999999999999999987 77899 9999887665566
Q ss_pred HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC-------CCC
Q 013083 286 SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK-------EKL 358 (450)
Q Consensus 286 ~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~-------~~l 358 (450)
..+..+ .+++|+|||||.+.. .....|+..|... .....+|+|||.+ ..+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~------------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~ 126 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR------------------EQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHI 126 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH------------------HHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCC
T ss_pred cHHHHc-CCcEEEEcChHHCCH------------------HHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCC
Confidence 666554 457899999998732 2345666666432 2345677888764 234
Q ss_pred CccccCCCcce-eEEEeCC
Q 013083 359 DPALLRPGRMD-MHIHMSY 376 (450)
Q Consensus 359 d~aLlrpgR~d-~~I~~~~ 376 (450)
.+.|.. |+. ..|++|.
T Consensus 127 ~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 127 IAELYY--CFAMTQIACLP 143 (145)
T ss_dssp CHHHHH--HHHHHEEECCC
T ss_pred CHHHHH--HhcCCEEeCCC
Confidence 555544 433 2466654
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=3.4e-13 Score=148.74 Aligned_cols=160 Identities=23% Similarity=0.272 Sum_probs=112.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
...|..|+.++|.++..+.+++.+. . ..+.++||+||||||||++++++|+.+ +..+
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~----~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLC----R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHh----c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 3567789999999988888776553 1 125789999999999999999999987 6778
Q ss_pred EEEecCccCC--------chhHHHHHhcCC--CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc
Q 013083 271 YDLDLTDVQS--------NSDLRSLLLSMP--SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS 340 (450)
Q Consensus 271 ~~l~~~~~~~--------~~~L~~l~~~~~--~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~ 340 (450)
+.++++.+.. ...++.++.... .++||||||+|.+.+... ....... ..+.+..+..
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~----------~~~~~~~---~~~~L~~~l~ 312 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA----------ASGGQVD---AANLIKPLLS 312 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC----------SSSCHHH---HHHHHSSCSS
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC----------CCcchHH---HHHHHHHHHh
Confidence 8888766531 345666666554 479999999999864110 0111111 2233333322
Q ss_pred cCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 341 CCSEGRIIIFTTNHK-----EKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 341 ~~~~~~iiI~TTN~~-----~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
..+..+|++||.+ -.+|++|.+ ||+ .+.++.|+.+++.++++.+..
T Consensus 313 --~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 313 --SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp --SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 2456778888764 357899999 998 599999999999998887653
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.45 E-value=1.9e-12 Score=129.31 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=105.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC------------------------CcEEEEecC---ccCCchhHHHHHhcCC--
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK------------------------FDIYDLDLT---DVQSNSDLRSLLLSMP-- 292 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~------------------------~~~~~l~~~---~~~~~~~L~~l~~~~~-- 292 (450)
+.+|||+||||||||++|+++|+.+. .+++.++.. .-..-+.++.++....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 46899999999999999999999874 346666653 2223445666665542
Q ss_pred ----CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013083 293 ----SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRM 368 (450)
Q Consensus 293 ----~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~ 368 (450)
.+.|++|||+|.+. ....+.||..++.. +.+.++|++||.++++.|++++ |+
T Consensus 104 ~~~~~~kvviIdead~l~------------------~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc 159 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLT------------------DAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC 159 (334)
T ss_dssp CTTSSCEEEEESCGGGBC------------------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred cccCCcEEEEECchhhcC------------------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cc
Confidence 46899999999873 23467888888753 4578889999999999999999 88
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHH
Q 013083 369 DMHIHMSYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVA 416 (450)
Q Consensus 369 d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~ 416 (450)
. .++|+.|+.++...++....... .+.++.++...+-++..+.
T Consensus 160 ~-~~~~~~~~~~~~~~~L~~~~~~~----~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 160 R-LHYLAPPPEQYAVTWLSREVTMS----QDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp E-EEECCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHTTTCHHHHH
T ss_pred e-eeeCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHcCCCHHHHH
Confidence 5 59999999999998888765221 2333444444445555443
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.43 E-value=3.2e-12 Score=126.04 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=103.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDL 284 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L 284 (450)
++++|.....+.+.+.+...... ..++||+||||||||++|+++++.. +.+++.++|+.+...-.-
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~-----------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS-----------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST-----------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35788888888888887765422 4689999999999999999999976 678999999987432111
Q ss_pred HHHHhcC-----------------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc------
Q 013083 285 RSLLLSM-----------------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC------ 341 (450)
Q Consensus 285 ~~l~~~~-----------------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~------ 341 (450)
..+|... ..+++|||||||.+.. .....|+..++...-.
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~------------------~~q~~Ll~~l~~~~~~~~g~~~ 132 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------LMQVRLLRAIQEREVQRVGSNQ 132 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH------------------HHHHHHHHHHHSSBCCBTTBCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH------------------HHHHHHHHHHhcCEeeecCCcc
Confidence 2222211 1357999999998732 2445667766643200
Q ss_pred -CCCCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhC
Q 013083 342 -CSEGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCT--ASVFEQLAFNYLG 391 (450)
Q Consensus 342 -~~~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~--~~~r~~l~~~~l~ 391 (450)
...++.||+|||.. ..++++|.. |+. ..|++|.+. .+....++..|+.
T Consensus 133 ~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 133 TISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred cccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 11346788888875 346777777 874 446677665 3556667777663
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.42 E-value=4.4e-13 Score=147.95 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=107.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----------CCcE
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----------KFDI 270 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----------~~~~ 270 (450)
...|..|+.++|.++.++.++..+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 45677899999999999888776542 225689999999999999999999997 8889
Q ss_pred EEEecCcc---CCchhHHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCC
Q 013083 271 YDLDLTDV---QSNSDLRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEG 345 (450)
Q Consensus 271 ~~l~~~~~---~~~~~L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~ 345 (450)
+.+++..- ..+..++.++..+ ..++||||| .. . ...+.|+..++ .+.
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~---~~~~~L~~~l~------~~~ 291 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------I---DASNILKPSLA------RGE 291 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------CCCTT------SSS
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------h---hHHHHHHHHHh------cCC
Confidence 88887221 1234666766654 468999999 10 0 11222333333 246
Q ss_pred eEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCc
Q 013083 346 RIIIFTTNHKE-----KLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 346 ~iiI~TTN~~~-----~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
+.+|++||..+ .+|++|+| ||.. |.|+.|+.+++.+|++.+...
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hCcE-EEeCCCCHHHHHHHHHHHHHH
Confidence 78899999888 79999999 9965 999999999999999987765
No 77
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.38 E-value=2.6e-13 Score=118.80 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=87.6
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHH
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLL 288 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~ 288 (450)
+++|.++..+++.+.+..+... ..++||+||||||||++|+++++..+ +++.++|+.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 4678888888888888766532 36899999999999999999999988 9999999876422 234455
Q ss_pred hcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC-CCC----Ccccc
Q 013083 289 LSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK-EKL----DPALL 363 (450)
Q Consensus 289 ~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~-~~l----d~aLl 363 (450)
..+ .+++|+|||||.+.. .....|+..++... ..+..+|+|||.+ +.+ +++|.
T Consensus 72 ~~a-~~~~l~lDei~~l~~------------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYSR------------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp HHT-TTSEEEEEECTTCCH------------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred HhC-CCCeEEEeChHHCCH------------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHH
Confidence 444 467999999998732 23344566665432 2345677777754 332 23344
Q ss_pred CCCcc-eeEEEeCCC
Q 013083 364 RPGRM-DMHIHMSYC 377 (450)
Q Consensus 364 rpgR~-d~~I~~~~p 377 (450)
. |+ ...|++|..
T Consensus 130 ~--rl~~~~i~lPpL 142 (143)
T 3co5_A 130 G--LFSESVVRIPPL 142 (143)
T ss_dssp H--HSSSEEEEECCC
T ss_pred H--HhcCcEEeCCCC
Confidence 3 43 345677653
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=4.1e-12 Score=141.99 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=115.0
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchh-
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSD- 283 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~- 283 (450)
+.++|.++.++.+...+......-. ..+. +..++||+||||||||++|+++|+.+ +.+++.++|+.+.....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~---~~~~-p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLK---DPNR-PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCS---CSSS-CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccC---CCCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 5678888888888887765432100 0011 12479999999999999999999999 78999999998754322
Q ss_pred ------------------HHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccC---
Q 013083 284 ------------------LRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCC--- 342 (450)
Q Consensus 284 ------------------L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~--- 342 (450)
+...+.. ..++||||||||.+- ...++.|+..|+.-.-..
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~------------------~~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH------------------PDVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp GGC--------------CHHHHHHH-CSSEEEEESSGGGSC------------------HHHHHHHHHHHTTTEECCSSS
T ss_pred HHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC------------------HHHHHHHHHHhccCceECCCC
Confidence 2222222 346899999998762 346788888887432110
Q ss_pred ----CCCeEEEEEcCC--------------------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 343 ----SEGRIIIFTTNH--------------------------KEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 343 ----~~~~iiI~TTN~--------------------------~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
-.+.+||+|||. ...+.|+|+. |++..+.+++|+.+++..|+..++.
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 135789999997 2356788888 9999999999999999999998874
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.5e-12 Score=127.03 Aligned_cols=121 Identities=14% Similarity=0.204 Sum_probs=95.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc------CCcEEEEecCc-cCCchhHHHHHhcCC------CceEEEEEccccccccc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL------KFDIYDLDLTD-VQSNSDLRSLLLSMP------SRSMLVIEDIDCSITLE 309 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l------~~~~~~l~~~~-~~~~~~L~~l~~~~~------~~sIlviDdiD~l~~~~ 309 (450)
..||||||||||||++++++|+.+ ..+++.++.++ -.+-+.+++++..+. ..-|++|||+|.+-
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt--- 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--- 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC---
Confidence 589999999999999999999974 45788888764 233445666655432 35799999999873
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNY 389 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 389 (450)
....+.||..|+.. ++..++|++||.++++.|++++ | .++|+.++.++....+...
T Consensus 96 ---------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 96 ---------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp ---------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHH
Confidence 23467888888753 4678888899999999999999 8 6999999999988888876
Q ss_pred h
Q 013083 390 L 390 (450)
Q Consensus 390 l 390 (450)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 6
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.33 E-value=1.4e-11 Score=129.42 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=95.1
Q ss_pred ccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC--cEEEEecCccCCchhH--
Q 013083 209 TLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF--DIYDLDLTDVQSNSDL-- 284 (450)
Q Consensus 209 ~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~--~~~~l~~~~~~~~~~L-- 284 (450)
.++|.++.++.+...+. . +.++||+||||||||++|+++|+.++. ++..+.+... +.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~---~------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~-t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---S------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---H------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC-CHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---c------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC-CHHHhcC
Confidence 46677777766544332 1 368999999999999999999999853 5555554321 11111
Q ss_pred ---------HHHHhcCC-----CceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc------cCCC
Q 013083 285 ---------RSLLLSMP-----SRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS------CCSE 344 (450)
Q Consensus 285 ---------~~l~~~~~-----~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~------~~~~ 344 (450)
...+.... .++||+||||+.+. ..+.+.|+..|+.-.- ...+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~------------------~~~q~~LL~~lee~~v~i~G~~~~~~ 148 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG------------------PAILNTLLTAINERQFRNGAHVEKIP 148 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC------------------HHHHHHHHHHHHSSEEECSSSEEECC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc------------------HHHHHHHHHHHHHHhccCCCCcCCcc
Confidence 11222221 35689999998652 3466778888853210 1112
Q ss_pred CeEEEEEcCCCCC---CCccccCCCcceeEEEeCCCCH-HHHHHHHHHHhC
Q 013083 345 GRIIIFTTNHKEK---LDPALLRPGRMDMHIHMSYCTA-SVFEQLAFNYLG 391 (450)
Q Consensus 345 ~~iiI~TTN~~~~---ld~aLlrpgR~d~~I~~~~p~~-~~r~~l~~~~l~ 391 (450)
.+++|+|||.+.. +.+++++ ||..+|++|+|+. +++..|+.....
T Consensus 149 ~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 149 MRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 3467888885322 4469999 9999999999987 778888887653
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=2.4e-12 Score=116.47 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=82.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCc
Q 013083 202 KHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTD 277 (450)
Q Consensus 202 ~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~ 277 (450)
..+.+|++++...+..+.+.+.+..+...- ..+.+.+++|+||||||||+|++++|+.+ +..++.+++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456789999886666667777777666532 22335789999999999999999999987 66666676655
Q ss_pred cCCc-------hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEE
Q 013083 278 VQSN-------SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIF 350 (450)
Q Consensus 278 ~~~~-------~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~ 350 (450)
+... .....++....++.+|+|||++.... +...+..+..+++.. .. .+..+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~-------------~~~~~~~l~~ll~~~---~~---~~~~ii~ 138 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL-------------SDWQRELISYIITYR---YN---NLKSTII 138 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC-------------CHHHHHHHHHHHHHH---HH---TTCEEEE
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC-------------CHHHHHHHHHHHHHH---HH---cCCCEEE
Confidence 4210 00112233334688999999985421 112223444444433 21 3456788
Q ss_pred EcCCCC
Q 013083 351 TTNHKE 356 (450)
Q Consensus 351 TTN~~~ 356 (450)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888763
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=4.6e-11 Score=145.10 Aligned_cols=135 Identities=20% Similarity=0.357 Sum_probs=96.0
Q ss_pred CceeeeeCCCCCchHHHH-HHHHHHcCCcEEEEecCccCCchhHHHHHhcC-----------------CCceEEEEEccc
Q 013083 242 KRGYLLYGPPGTGKSSLI-AAMANHLKFDIYDLDLTDVQSNSDLRSLLLSM-----------------PSRSMLVIEDID 303 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla-~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~-----------------~~~sIlviDdiD 303 (450)
++++||+||||||||++| +++++..++.++.++++...+...+++.+... .+++|||||||+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 55555558899999999887777776665431 135799999998
Q ss_pred ccccccccCcccccCCCCCCchhhHHhHHHHhh--cccccCC------CCeEEEEEcCCCC-----CCCccccCCCccee
Q 013083 304 CSITLENRDSKDQAGHNQGDNKVTLSGLLNFID--GLWSCCS------EGRIIIFTTNHKE-----KLDPALLRPGRMDM 370 (450)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld--g~~~~~~------~~~iiI~TTN~~~-----~ld~aLlrpgR~d~ 370 (450)
.... + ....+..+..|-..+| |.+.... .++.+|+|||++. .|+++|+| || .
T Consensus 1347 mp~~--d----------~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1347 LPKL--D----------KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp CSCC--C----------SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred cccc--c----------ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 5321 1 1111222222222233 4433211 2468899999994 79999999 99 5
Q ss_pred EEEeCCCCHHHHHHHHHHHhC
Q 013083 371 HIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 371 ~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.|.++.|+.+++..|+..++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 599999999999999988774
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=2.4e-12 Score=138.16 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=87.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec----CccCCchhHHHHHhcC----------CCceEEEEEccccccccc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL----TDVQSNSDLRSLLLSM----------PSRSMLVIEDIDCSITLE 309 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~----~~~~~~~~L~~l~~~~----------~~~sIlviDdiD~l~~~~ 309 (450)
++||+||||||||++|+++|+.++..++.... ..+. .......+... ..++|++|||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~-~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLT-AAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSE-EECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccc-ceeeeccccccccccCCeeEecCCCcEEeehhhhCCH--
Confidence 79999999999999999999999877665322 2221 00111111111 1368999999998732
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhccc---------ccCCCCeEEEEEcCCCC-------------CCCccccCCCc
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLW---------SCCSEGRIIIFTTNHKE-------------KLDPALLRPGR 367 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~---------~~~~~~~iiI~TTN~~~-------------~ld~aLlrpgR 367 (450)
.....|+..|+.-. ...+....||+|||.+. .++++|++ |
T Consensus 406 ----------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--R 467 (595)
T 3f9v_A 406 ----------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--R 467 (595)
T ss_dssp ----------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--G
T ss_pred ----------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--h
Confidence 34566777776321 11234567999999886 89999999 9
Q ss_pred cee-EEEeCCCCHHHHHHHHHHHhCc
Q 013083 368 MDM-HIHMSYCTASVFEQLAFNYLGI 392 (450)
Q Consensus 368 ~d~-~I~~~~p~~~~r~~l~~~~l~~ 392 (450)
||. .+..++|+.+ ...|+++.+..
T Consensus 468 FDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 468 FDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 985 5556778878 88888887764
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=1.2e-10 Score=118.09 Aligned_cols=164 Identities=10% Similarity=0.108 Sum_probs=107.2
Q ss_pred CCcccccChHHHHHHHHHH-HHHhcChhHHhhhCCCCCceeee--eCCCCCchHHHHHHHHHHc---------CCcEEEE
Q 013083 206 NFNTLALDSELKKAIMEDL-DNFMNGKEYYTRVGKAWKRGYLL--YGPPGTGKSSLIAAMANHL---------KFDIYDL 273 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l-~~~l~~~~~~~~~g~~~~rgiLL--~GppGTGKTsla~alA~~l---------~~~~~~l 273 (450)
..+.++|.++..+.+.+.+ ........ ..++.++| +||||||||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~-------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAG-------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSC-------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCC-------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477899999888888877 65543200 11467899 9999999999999999887 5577788
Q ss_pred ecCccCCch--------------------------hHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhh
Q 013083 274 DLTDVQSNS--------------------------DLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVT 327 (450)
Q Consensus 274 ~~~~~~~~~--------------------------~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~ 327 (450)
++....+.. .+...+.....+.||+|||+|.+... .......
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~------------~~~~~~~ 160 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS------------PRIAAED 160 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC------------TTSCHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc------------cCcchHH
Confidence 864432111 11222222245889999999987420 0012345
Q ss_pred HHhHHHHhhcccccCC--CCeEEEEEcCCCC---CCC---ccccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 328 LSGLLNFIDGLWSCCS--EGRIIIFTTNHKE---KLD---PALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 328 l~~LL~~ldg~~~~~~--~~~iiI~TTN~~~---~ld---~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+..++..++.... .+ ....+|+||+.++ .++ +.+.+ ++...++++.++.++..+++...+.
T Consensus 161 l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 161 LYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 5555555544321 02 4567788887664 344 66666 5555699999999999999987653
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=3.9e-11 Score=110.27 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCC-CCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA-WKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
.+.+|+++++.+...+.+++.+..++.... .. .+++++|+||||||||++++++|+++ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 456899999877556666666666654321 11 12789999999999999999999988 677887877653
Q ss_pred CC-------chhHHHHHhcCCCceEEEEEccccc
Q 013083 279 QS-------NSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 279 ~~-------~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
.. ...+..++.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11 1112222222234569999999765
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.03 E-value=2e-10 Score=113.38 Aligned_cols=97 Identities=23% Similarity=0.404 Sum_probs=62.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEecCcc
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLDLTDV 278 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~~~~~ 278 (450)
.+.+|+++.+....+..+.+.+..|+... +.....+++||||||||||+|+.++|+++. .+++.+.+.++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 35689999886645555666666666521 111257999999999999999999999764 77777776543
Q ss_pred C-------CchhHHHHHhcCCCceEEEEEccccc
Q 013083 279 Q-------SNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 279 ~-------~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
. ....+...+....+..+|+|||++..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1 01111111222234679999999754
No 87
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.01 E-value=3.5e-10 Score=114.60 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=86.6
Q ss_pred hCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccc
Q 013083 237 VGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQ 316 (450)
Q Consensus 237 ~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~ 316 (450)
.+++.++.++|+||||+||||+++++++.++..++.++... ......+.......++++||++.......+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~--- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLP--- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---
Confidence 37778889999999999999999999999988776644332 22333345556678889999998754211100
Q ss_pred cCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q 013083 317 AGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSY 376 (450)
Q Consensus 317 ~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~ 376 (450)
..........+.+.+||. +.++++||+++.+ +++++|||++..+...+
T Consensus 237 ----~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 ----SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ----CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ----ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 011112446777888874 3478889999999 89999999999888766
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.98 E-value=9e-10 Score=101.86 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=72.8
Q ss_pred HHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEE
Q 013083 221 MEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIE 300 (450)
Q Consensus 221 ~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviD 300 (450)
+..++.|+. |.|.++++|||||||||||++|.++|+.++..++.+..+. +. ..+.......||+||
T Consensus 45 ~~~l~~~~~--------~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLD 110 (212)
T 1tue_A 45 LGALKSFLK--------GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLD 110 (212)
T ss_dssp HHHHHHHHH--------TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEE
T ss_pred HHHHHHHHh--------cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEE
Confidence 444555554 3666789999999999999999999999976654332111 11 012223345599999
Q ss_pred cccccccccccCcccccCCCCCCchhhHHhHHHHhhcccc----cCC-----CCeEEEEEcCCC---CCCCccccCCCcc
Q 013083 301 DIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWS----CCS-----EGRIIIFTTNHK---EKLDPALLRPGRM 368 (450)
Q Consensus 301 diD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~----~~~-----~~~iiI~TTN~~---~~ld~aLlrpgR~ 368 (450)
|+|.-. ....-..+-+.+||... ... ...-+|.|||.. +..-+.|.+ |+
T Consensus 111 Ead~~~-----------------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri 171 (212)
T 1tue_A 111 DATTTC-----------------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI 171 (212)
T ss_dssp EECHHH-----------------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC
T ss_pred CCCchh-----------------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE
Confidence 998421 01112244566677420 000 134688899874 222356777 87
Q ss_pred eeEEEeCCC
Q 013083 369 DMHIHMSYC 377 (450)
Q Consensus 369 d~~I~~~~p 377 (450)
.. +.++.|
T Consensus 172 ~~-f~F~~~ 179 (212)
T 1tue_A 172 TV-FEFPNA 179 (212)
T ss_dssp EE-EECCSC
T ss_pred EE-EEcCCC
Confidence 53 777643
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.90 E-value=1.3e-08 Score=109.41 Aligned_cols=52 Identities=33% Similarity=0.311 Sum_probs=42.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 201 LKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 201 ~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
..+|..|+.++|...+++.+...+. . ...++|+||||||||+++++||+.+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~----~-----------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN----Q-----------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH----T-----------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc----C-----------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4678899999999887766544432 1 35899999999999999999999885
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.88 E-value=2.4e-09 Score=94.36 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=66.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCchhHHHHHhcCCCceEEEEEcccccccccccCcccccC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAG 318 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~ 318 (450)
...++|+||+|+|||+|++++++.+ |..++.++..++.... + ..++.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~----~---~~~~~lLilDE~~~~~~----------- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD----A---AFEAEYLAVDQVEKLGN----------- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG----G---GGGCSEEEEESTTCCCS-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH----H---HhCCCEEEEeCccccCh-----------
Confidence 4689999999999999999999988 7778888887765431 1 23578999999987532
Q ss_pred CCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcC-CCCCCC--ccccCCCccee
Q 013083 319 HNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTN-HKEKLD--PALLRPGRMDM 370 (450)
Q Consensus 319 ~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN-~~~~ld--~aLlrpgR~d~ 370 (450)
..+..+..+++.+. .. +..++|+||| .|+.+. ++|.+ |+..
T Consensus 98 ----~~~~~l~~li~~~~---~~--g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 98 ----EEQALLFSIFNRFR---NS--GKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp ----HHHHHHHHHHHHHH---HH--TCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred ----HHHHHHHHHHHHHH---Hc--CCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 11334555555443 21 2233555666 454443 77777 6643
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.4e-07 Score=93.13 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=102.1
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc-----C
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV-----Q 279 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~-----~ 279 (450)
...+.++|-++..+.+.+ + .. +.++|+||+|+|||+|++.+++.++.+++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345677887766665544 3 21 479999999999999999999998777777776542 0
Q ss_pred C-----------------------------------------------chhHHH---HHhcCC-CceEEEEEcccccccc
Q 013083 280 S-----------------------------------------------NSDLRS---LLLSMP-SRSMLVIEDIDCSITL 308 (450)
Q Consensus 280 ~-----------------------------------------------~~~L~~---l~~~~~-~~sIlviDdiD~l~~~ 308 (450)
+ ...+.. .+.... .+.+|+|||++.+..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~- 151 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK- 151 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG-
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc-
Confidence 0 011222 222222 388999999998742
Q ss_pred cccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC---------CCCccccCCCcceeEEEeCCCCH
Q 013083 309 ENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE---------KLDPALLRPGRMDMHIHMSYCTA 379 (450)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~---------~ld~aLlrpgR~d~~I~~~~p~~ 379 (450)
......+..|-...+.. .+..+|+|+.... .....+ .||+...++++..+.
T Consensus 152 -------------~~~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 152 -------------LRGVNLLPALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSR 211 (357)
T ss_dssp -------------CTTCCCHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCH
T ss_pred -------------cCchhHHHHHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCH
Confidence 00111222222222321 2355666665421 111222 247767899999999
Q ss_pred HHHHHHHHHHhCccCCCcHHHHHHHHhcCCCCHHHHHHH
Q 013083 380 SVFEQLAFNYLGISHHHLFEQIEEMLMKVNVTPAEVAGE 418 (450)
Q Consensus 380 ~~r~~l~~~~l~~~~~~l~~ei~~l~~~~~~spa~i~~~ 418 (450)
++..+++...++.......+ ...+....+-.|.-+...
T Consensus 212 ~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~~ 249 (357)
T 2fna_A 212 EEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTYF 249 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHHH
Confidence 99999998765321111111 145555556667665443
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.85 E-value=2.1e-09 Score=125.81 Aligned_cols=147 Identities=13% Similarity=0.119 Sum_probs=91.9
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcC----------hhHHhh------h------------CCCCCceeeeeCCCCCchH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNG----------KEYYTR------V------------GKAWKRGYLLYGPPGTGKS 256 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~----------~~~~~~------~------------g~~~~rgiLL~GppGTGKT 256 (450)
.+|+++.+..+.|+.+++.+...+.. ++.|+. . |.|..|.+|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 47999999999999999999888843 445555 1 2444556999999999999
Q ss_pred HHHHHHHHHc---CCcEEEEecCccC----------------------CchhHHHHHhc--CCCceEEEEEccccccccc
Q 013083 257 SLIAAMANHL---KFDIYDLDLTDVQ----------------------SNSDLRSLLLS--MPSRSMLVIEDIDCSITLE 309 (450)
Q Consensus 257 sla~alA~~l---~~~~~~l~~~~~~----------------------~~~~L~~l~~~--~~~~sIlviDdiD~l~~~~ 309 (450)
+||.++|.+. +-+...++..... ++..++.++.. ...+++|++|++|++.+..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999977 4455555544421 23455555542 3469999999999998732
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
.... ...........+.++++|..|++.... .+++|| +||+.
T Consensus 1177 ~~~g-~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEG-EIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHS-CTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred cccc-ccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 2110 000001122234689999999997652 344444 77765
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.81 E-value=7.1e-09 Score=95.87 Aligned_cols=120 Identities=15% Similarity=0.193 Sum_probs=77.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc--------C-CcEEEEecCccCC---------------------chhHHHHHh-cC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL--------K-FDIYDLDLTDVQS---------------------NSDLRSLLL-SM 291 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l--------~-~~~~~l~~~~~~~---------------------~~~L~~l~~-~~ 291 (450)
-.+|++|+||||||+++.+++... | .+++..++.++.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 368899999999999998875443 4 6777666554421 022232221 12
Q ss_pred CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q 013083 292 PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMH 371 (450)
Q Consensus 292 ~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~ 371 (450)
..++||+|||++.+.+. +.. ..+. ..++..+... ...+.-||++|++++.|+.+++. |++.+
T Consensus 86 ~~~~vliIDEAq~l~~~--~~~-------~~e~----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~~~ 147 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPA--RSA-------GSKI----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVRKH 147 (199)
T ss_dssp GTTCEEEETTGGGTSBC--CCT-------TCCC----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEEEE
T ss_pred cCceEEEEEChhhhccC--ccc-------cchh----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--HhheE
Confidence 24899999999998641 100 0011 1345444432 23456778888889999999998 99999
Q ss_pred EEeCCCCHH
Q 013083 372 IHMSYCTAS 380 (450)
Q Consensus 372 I~~~~p~~~ 380 (450)
++++.+...
T Consensus 148 ~~l~~~~~~ 156 (199)
T 2r2a_A 148 YHIASNKMG 156 (199)
T ss_dssp EEEEECSSC
T ss_pred EEEcCcccC
Confidence 999886543
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.75 E-value=6.9e-08 Score=118.44 Aligned_cols=135 Identities=16% Similarity=0.311 Sum_probs=93.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHH-HcCCcEEEEecCccCCchhHHHHHhc------C------------CCceEEEEEcc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN-HLKFDIYDLDLTDVQSNSDLRSLLLS------M------------PSRSMLVIEDI 302 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~-~l~~~~~~l~~~~~~~~~~L~~l~~~------~------------~~~sIlviDdi 302 (450)
++++||+||||||||+++..... ..+.+++.++++.-.+...+...+.. . .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46899999999999988765444 44778899999998877777766642 1 12469999999
Q ss_pred cccccccccCcccccCCCCCCchhhHHhHHHHhh--cccccC------CCCeEEEEEcCCC-----CCCCccccCCCcce
Q 013083 303 DCSITLENRDSKDQAGHNQGDNKVTLSGLLNFID--GLWSCC------SEGRIIIFTTNHK-----EKLDPALLRPGRMD 369 (450)
Q Consensus 303 D~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld--g~~~~~------~~~~iiI~TTN~~-----~~ld~aLlrpgR~d 369 (450)
+.... +.-..+..+.-|...+| |.+... -.+..+|+|+|++ ..++++|+| ||.
T Consensus 1384 Nmp~~------------D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1384 NLPST------------DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp TCCCC------------CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred CCCCc------------cccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 85321 01122334444444444 222210 1346788999987 358999999 997
Q ss_pred eEEEeCCCCHHHHHHHHHHHhC
Q 013083 370 MHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 370 ~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
+ +.+++|+.++...|+..++.
T Consensus 1450 v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 I-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp E-EECCCCCHHHHHHHHHHHHH
T ss_pred E-EEeCCCCHHHHHHHHHHHHH
Confidence 7 99999999999999876653
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=8.4e-07 Score=87.25 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=105.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccC---
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQ--- 279 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~--- 279 (450)
.|..-+.++|-++..+.+.+.+.. | +.++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344456788888877777665532 1 5899999999999999999999886 5555543221
Q ss_pred ---Cc------------------------------------hhHHHH---HhcC---CCceEEEEEcccccccccccCcc
Q 013083 280 ---SN------------------------------------SDLRSL---LLSM---PSRSMLVIEDIDCSITLENRDSK 314 (450)
Q Consensus 280 ---~~------------------------------------~~L~~l---~~~~---~~~sIlviDdiD~l~~~~~~~~~ 314 (450)
+. ..+..+ +... ..+.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 00 112222 1111 138899999999874200
Q ss_pred cccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCC---C------CCCccccCCCcceeEEEeCCCCHHHHHHH
Q 013083 315 DQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK---E------KLDPALLRPGRMDMHIHMSYCTASVFEQL 385 (450)
Q Consensus 315 ~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~---~------~ld~aLlrpgR~d~~I~~~~p~~~~r~~l 385 (450)
.......+..|-..++.. .+..+|+|+... + .....+. ||....++++..+.++..++
T Consensus 145 ------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~ 211 (350)
T 2qen_A 145 ------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEF 211 (350)
T ss_dssp ------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHH
T ss_pred ------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHH
Confidence 001122233332333321 245556665432 1 1122232 46667899999999999999
Q ss_pred HHHHhCccCCCc-HHHHHHHHhcCCCCHHHHHH
Q 013083 386 AFNYLGISHHHL-FEQIEEMLMKVNVTPAEVAG 417 (450)
Q Consensus 386 ~~~~l~~~~~~l-~~ei~~l~~~~~~spa~i~~ 417 (450)
+...+....... .+.+..+....+-.|.-+..
T Consensus 212 l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~ 244 (350)
T 2qen_A 212 LKRGFREVNLDVPENEIEEAVELLDGIPGWLVV 244 (350)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 887664332222 34555666666667765544
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.75 E-value=4.2e-09 Score=103.93 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCc--EEEEecCc----cC-C-chhHHHHHhcCCCceEEEEEccccccccc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD--IYDLDLTD----VQ-S-NSDLRSLLLSMPSRSMLVIEDIDCSITLE 309 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~--~~~l~~~~----~~-~-~~~L~~l~~~~~~~sIlviDdiD~l~~~~ 309 (450)
|.+.++.++|+||||||||+|+.++|...+.+ ++.+...+ .. . +..+..+.....+..+||||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 44556678999999999999999999876555 44441111 11 1 12222222222211199999999885311
Q ss_pred ccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccc
Q 013083 310 NRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPAL 362 (450)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aL 362 (450)
... +..+.....+..++..|+++... .+..+|++|| +...++++
T Consensus 199 ~~~------s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGN------TTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ccc------cccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 110 00112234567777777665442 3467788888 55566664
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.74 E-value=3.4e-07 Score=92.97 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=98.4
Q ss_pred CcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCccCCchh
Q 013083 207 FNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDVQSNSD 283 (450)
Q Consensus 207 f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~~~~~~ 283 (450)
++.+++.....+++.+.+...... ...+|++|++||||++++++++.... .+++.++|+.+..+.-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA-----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC-----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC-----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 456777777777777777653321 35789999999999999999998874 6899999998753322
Q ss_pred HHHHHhcC-----------------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-c-cC--
Q 013083 284 LRSLLLSM-----------------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-S-CC-- 342 (450)
Q Consensus 284 L~~l~~~~-----------------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~-~~-- 342 (450)
-.++|... ..+++||||||+.+. ......||..++.-. . ..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------~~~q~~Ll~~l~~~~~~~~g~~ 266 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS------------------LEAQAKLLRVIESGKFYRLGGR 266 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC------------------HHHHHHHHHHHHHSEECCBTCC
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC------------------HHHHHHHHHHHhcCcEEeCCCC
Confidence 23344321 235799999999873 234556666665311 1 00
Q ss_pred ---CCCeEEEEEcCCC-------CCCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhC
Q 013083 343 ---SEGRIIIFTTNHK-------EKLDPALLRPGRMD-MHIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 343 ---~~~~iiI~TTN~~-------~~ld~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
.-++.||+|||.. ..+.+.|.- |+. ..|++|.... +....|+.+|+.
T Consensus 267 ~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 267 KEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp SBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred ceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 1234678888863 234444444 443 4566666543 566667777763
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.74 E-value=3.8e-07 Score=92.10 Aligned_cols=153 Identities=15% Similarity=0.127 Sum_probs=98.8
Q ss_pred cccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCc--EEEEecCccCCchhHH
Q 013083 208 NTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFD--IYDLDLTDVQSNSDLR 285 (450)
Q Consensus 208 ~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~--~~~l~~~~~~~~~~L~ 285 (450)
..+++......++.+.+...... ...+|++|++||||+.+++++....+.. ++.++|+.+..+..-.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~-----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS-----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS-----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc-----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 34677777777776666544322 3579999999999999999999988554 9999999985543334
Q ss_pred HHHhcC-----------------CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-ccCCC---
Q 013083 286 SLLLSM-----------------PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-SCCSE--- 344 (450)
Q Consensus 286 ~l~~~~-----------------~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~~~~~--- 344 (450)
.+|... ...+.||||||+.+. ......||..++.-. ...|.
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------~~~Q~~Ll~~l~~~~~~~~g~~~~ 259 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD------------------QRVQAKLLRVLETGSFTRLGGNQK 259 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC------------------HHHHHHHHHHHHHSEECCBTCCCB
T ss_pred HhcCccccccCCcccccCChHhhcCCCeEEecChhhCC------------------HHHHHHHHHHHHhCCcccCCCCcc
Confidence 454321 245689999999873 234556676665321 11111
Q ss_pred ---CeEEEEEcCCC-------CCCCccccCCCccee-EEEeCCCCH--HHHHHHHHHHhC
Q 013083 345 ---GRIIIFTTNHK-------EKLDPALLRPGRMDM-HIHMSYCTA--SVFEQLAFNYLG 391 (450)
Q Consensus 345 ---~~iiI~TTN~~-------~~ld~aLlrpgR~d~-~I~~~~p~~--~~r~~l~~~~l~ 391 (450)
.+-+|++||.. ..+.++|.. |+.. .|++|+... +....|+.+|+.
T Consensus 260 ~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 260 IEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 24567777743 233444544 5443 577887766 667778887774
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.72 E-value=6.7e-08 Score=93.00 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=39.8
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCCCceEEEEEccccc
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMPSRSMLVIEDIDCS 305 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~~~sIlviDdiD~l 305 (450)
+++++++||||||||||+++.|||+.+..- -.++.+. + ...+.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~----~--~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN----E--NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC----S--SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc----c--ccccccccccEEEEeccccch
Confidence 446789999999999999999999987552 2233321 1 112444456677777777543
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=9e-08 Score=116.69 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=94.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHN 320 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~ 320 (450)
..|.++.||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++.+++|||+.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468999999999999999999999999999999999888888988887765 579999999987632
Q ss_pred CCCchhhHHhH-------HHHhhccc---------ccCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEeCCCCHH
Q 013083 321 QGDNKVTLSGL-------LNFIDGLW---------SCCSEGRIIIFTTN----HKEKLDPALLRPGRMDMHIHMSYCTAS 380 (450)
Q Consensus 321 ~~~~~~~l~~L-------L~~ldg~~---------~~~~~~~iiI~TTN----~~~~ld~aLlrpgR~d~~I~~~~p~~~ 380 (450)
.+++.+ +..+.... -.......|++|.| ....|+++|.+ || +.|.|.+|+.+
T Consensus 712 -----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 712 -----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 233333 22221100 01123346778888 34679999999 88 56999999998
Q ss_pred HHHHHHH
Q 013083 381 VFEQLAF 387 (450)
Q Consensus 381 ~r~~l~~ 387 (450)
...++.-
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777653
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=1.2e-06 Score=107.56 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=95.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCccCCchhHHHHHhcCC-CceEEEEEcccccccccccCcccccCCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMP-SRSMLVIEDIDCSITLENRDSKDQAGHN 320 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~-~~sIlviDdiD~l~~~~~~~~~~~~~~~ 320 (450)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.+...+.++|..+. .++-.++|||+.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 356789999999999999999999999999999999888888888887765 57889999998762
Q ss_pred CCCchhhHHhHHHHhh-----------------cccccCCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCH
Q 013083 321 QGDNKVTLSGLLNFID-----------------GLWSCCSEGRIIIFTTNH----KEKLDPALLRPGRMDMHIHMSYCTA 379 (450)
Q Consensus 321 ~~~~~~~l~~LL~~ld-----------------g~~~~~~~~~iiI~TTN~----~~~ld~aLlrpgR~d~~I~~~~p~~ 379 (450)
..+++.+...+. |-.-....+..||+|.|. ...|+++|.. ||-. |.|+.|+.
T Consensus 670 ----~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~-v~m~~Pd~ 742 (3245)
T 3vkg_A 670 ----ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRS-MAMIKPDR 742 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEE-EECCSCCH
T ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcEE-EEEeCCCH
Confidence 123333333222 211011234567888883 4689999999 8855 99999999
Q ss_pred HHHHHHHHHHhC
Q 013083 380 SVFEQLAFNYLG 391 (450)
Q Consensus 380 ~~r~~l~~~~l~ 391 (450)
+...++.-.-.+
T Consensus 743 ~~i~ei~L~s~G 754 (3245)
T 3vkg_A 743 EMIAQVMLYSQG 754 (3245)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcc
Confidence 888776544333
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.32 E-value=5.3e-07 Score=93.01 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=83.9
Q ss_pred cccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHH-HHHcCCcEEEEecCccCCchhHHHHH
Q 013083 210 LALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANHLKFDIYDLDLTDVQSNSDLRSLL 288 (450)
Q Consensus 210 l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~al-A~~l~~~~~~l~~~~~~~~~~L~~l~ 288 (450)
+.|.+++|+.+.-.+. -..+. ....-++||.|+||| ||.+++++ ++.+....+...... +...|...+
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEEE
Confidence 7888888777655431 11111 011236999999999 99999999 887766555422211 111111000
Q ss_pred ------------hcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccc-c----cCCCCeEEEEE
Q 013083 289 ------------LSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLW-S----CCSEGRIIIFT 351 (450)
Q Consensus 289 ------------~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~-~----~~~~~~iiI~T 351 (450)
.......|++||||+.+- ..+.+.|+..|+.-. + .-+....||+|
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~------------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA 345 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP------------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAA 345 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC------------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEE
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC------------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEE
Confidence 001246899999998762 356777888776321 0 11245688999
Q ss_pred cCCCC-----------CCCccccCCCcceeEEE-eCCCCHHH
Q 013083 352 TNHKE-----------KLDPALLRPGRMDMHIH-MSYCTASV 381 (450)
Q Consensus 352 TN~~~-----------~ld~aLlrpgR~d~~I~-~~~p~~~~ 381 (450)
+|..+ .|+++++. |||+.+. +++|+.+.
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred eCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 99875 78899999 9988554 46676543
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.18 E-value=1.6e-06 Score=102.95 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHHHhcC--
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSLLLSM-- 291 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l~~~~-- 291 (450)
|++.+++++||||||||||+||.++|.+. |..+..++..... ..+.+.+.+...
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36778899999999999999999998876 5566666655321 111222222222
Q ss_pred -CCceEEEEEcccccccccccCcccccCCCCCC-chhhHHhHHHHhhcccccCCCCeEEEEEcCCC
Q 013083 292 -PSRSMLVIEDIDCSITLENRDSKDQAGHNQGD-NKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHK 355 (450)
Q Consensus 292 -~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~-~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~ 355 (450)
.++++||||+++.+.+...... . .++.... ....++.+|..|++.... ..++|++||..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g-~-~~~~~~~~~~R~lsqlL~~L~~~~~~---~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEG-E-IGDSHMGLAARMMSQAMRKLAGNLKQ---SNTLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHS-C-TTCCCTTHHHHHHHHHHHHHHHHHHT---TTCEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccc-c-ccccccchHHHHHHHHHHHHHHHHHh---CCcEEEEEccc
Confidence 5789999999998875321100 0 0111111 245678888888887652 33555666644
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.17 E-value=1.1e-05 Score=79.87 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=83.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CC-cEEEEecCccCCchhHHHHHhcC------CCceEEEEEcccc-cccccc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KF-DIYDLDLTDVQSNSDLRSLLLSM------PSRSMLVIEDIDC-SITLEN 310 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~-~~~~l~~~~~~~~~~L~~l~~~~------~~~sIlviDdiD~-l~~~~~ 310 (450)
...||||||+|+||++.+.++++.+ +. +...+.... +.++++++..+ ..+-|++|||++. +.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~---- 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN---- 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC----
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC----
Confidence 4689999999999999999999876 33 222222221 23455554332 3577999999986 41
Q ss_pred cCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC------CCCccccCCCcceeEEEeCCCCHHHHHH
Q 013083 311 RDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE------KLDPALLRPGRMDMHIHMSYCTASVFEQ 384 (450)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~------~ld~aLlrpgR~d~~I~~~~p~~~~r~~ 384 (450)
....+.|+..++.. +++.++|++|+.++ ++.+++.+ |+ .++++..++..+...
T Consensus 91 --------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 91 --------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp --------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred --------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 23456677777653 34566666665533 45677787 66 458999999888887
Q ss_pred HHHHHhCccC
Q 013083 385 LAFNYLGISH 394 (450)
Q Consensus 385 l~~~~l~~~~ 394 (450)
.++..+...+
T Consensus 150 ~l~~~~~~~g 159 (343)
T 1jr3_D 150 WVAARAKQLN 159 (343)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 7777764443
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.03 E-value=9.6e-06 Score=73.27 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=23.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
.+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 467999999999999999999986544
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.01 E-value=0.00015 Score=77.02 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=90.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHH-------cCCcEEEEecC
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANH-------LKFDIYDLDLT 276 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~-------l~~~~~~l~~~ 276 (450)
|.....++|-+...+.|.+.+..- . ...+.++|+||+|+|||+||..+++. +...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL--K---------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS--T---------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhcc--c---------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 334466889888887776655311 0 11457899999999999999998753 22234444443
Q ss_pred ccCCc-------------------------------hhHHHHHhcCCCceEEEEEcccccccccccCcccccCCCCCCch
Q 013083 277 DVQSN-------------------------------SDLRSLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNK 325 (450)
Q Consensus 277 ~~~~~-------------------------------~~L~~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~ 325 (450)
..... ..++..+....++.+|||||++..
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------------- 248 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------------- 248 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------------------
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------------------
Confidence 32100 112222233336789999999732
Q ss_pred hhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE-eCCCCHHHHHHHHHHHhCccCCCcHHHHHHH
Q 013083 326 VTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIH-MSYCTASVFEQLAFNYLGISHHHLFEQIEEM 404 (450)
Q Consensus 326 ~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~-~~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l 404 (450)
..+.. + +.+..||+||........ .. |.. ..+. ++..+.++-.+++..+.+.......+.+.++
T Consensus 249 ----~~l~~---l----~~~~~ilvTsR~~~~~~~--~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i 313 (591)
T 1z6t_A 249 ----WVLKA---F----DSQCQILLTTRDKSVTDS--VM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSI 313 (591)
T ss_dssp ----HHHHT---T----CSSCEEEEEESCGGGGTT--CC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHH
T ss_pred ----HHHHH---h----cCCCeEEEECCCcHHHHh--cC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHH
Confidence 01221 1 123455667764332111 11 222 2222 2467888888899888765322223455566
Q ss_pred HhcCCCCHHHH
Q 013083 405 LMKVNVTPAEV 415 (450)
Q Consensus 405 ~~~~~~spa~i 415 (450)
++..+--|.-+
T Consensus 314 ~~~~~G~PLal 324 (591)
T 1z6t_A 314 IKECKGSPLVV 324 (591)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHhCCCcHHH
Confidence 66655555443
No 107
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.97 E-value=0.00019 Score=82.18 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=96.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc-------CCcEEEEec
Q 013083 203 HPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL-------KFDIYDLDL 275 (450)
Q Consensus 203 ~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l-------~~~~~~l~~ 275 (450)
-|.....++|-++..++|.+.+... . ...+-+.|+|++|+|||+||+.+++.. .-.++-+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~--~---------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL--N---------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT--T---------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc--c---------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555667899988888887766321 1 113568899999999999999988752 223445555
Q ss_pred CccCC---------------------------chhHHHH----HhcCCCceEEEEEcccccccccccCcccccCCCCCCc
Q 013083 276 TDVQS---------------------------NSDLRSL----LLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDN 324 (450)
Q Consensus 276 ~~~~~---------------------------~~~L~~l----~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~ 324 (450)
+.... ...+... +....++.+|||||++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 44210 1112221 2122348999999997431
Q ss_pred hhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC-CCHHHHHHHHHHHhCccCCCcHHHHHH
Q 013083 325 KVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSY-CTASVFEQLAFNYLGISHHHLFEQIEE 403 (450)
Q Consensus 325 ~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~-p~~~~r~~l~~~~l~~~~~~l~~ei~~ 403 (450)
.++.+ +.+..||+||..+.-... .. .....+.++. .+.++-.+++..+.......+.+...+
T Consensus 250 ---------~~~~~----~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~ 312 (1249)
T 3sfz_A 250 ---------VLKAF----DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHS 312 (1249)
T ss_dssp ---------HHTTT----CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHH
T ss_pred ---------HHHhh----cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHH
Confidence 11111 123346667765433211 11 1234477775 888888888888776554444455666
Q ss_pred HHhcCCCCH
Q 013083 404 MLMKVNVTP 412 (450)
Q Consensus 404 l~~~~~~sp 412 (450)
+++..+--|
T Consensus 313 i~~~~~glP 321 (1249)
T 3sfz_A 313 IIKECKGSP 321 (1249)
T ss_dssp HHHHTTTCH
T ss_pred HHHHhCCCH
Confidence 666665555
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.85 E-value=7e-05 Score=77.47 Aligned_cols=68 Identities=24% Similarity=0.225 Sum_probs=40.1
Q ss_pred CcccccccccCCCCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CC
Q 013083 192 GCWDANDMVLKHPMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KF 268 (450)
Q Consensus 192 ~~w~~~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~ 268 (450)
..|.+ ...|.+|++| .+++++.+.. +..++... ...++|.||||||||+++.+++..+ +.
T Consensus 12 ~~~~~----~~~p~~~~~L--n~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 12 SGLVP----RGSHMTFDDL--TEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp -------------CCSSCC--CHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCcc----ccCCCccccC--CHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 45765 7889999876 4555555443 33444432 2389999999999999999999887 33
Q ss_pred -cEEEEecC
Q 013083 269 -DIYDLDLT 276 (450)
Q Consensus 269 -~~~~l~~~ 276 (450)
.++.+..+
T Consensus 75 ~~il~~a~T 83 (459)
T 3upu_A 75 TGIILAAPT 83 (459)
T ss_dssp CCEEEEESS
T ss_pred ceEEEecCc
Confidence 45555433
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.82 E-value=0.00011 Score=67.29 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~ 277 (450)
|++.+.-++|+||||+|||+++..+|...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666677999999999999999999986567777776554
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.69 E-value=2e-05 Score=70.56 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
++.++|.|||||||||+++.+|..+++++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999988764
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=0.00012 Score=67.99 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH--c-------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH--L-------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~--l-------~~~~~~l~~~~ 277 (450)
|++....++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4566677999999999999999999995 3 44566666544
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=0.00023 Score=65.36 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
|++.+..++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45556678999999999999999999764 44554443
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.63 E-value=4e-05 Score=68.06 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
..++|.||||+||||+++++|..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5689999999999999999999999988876654
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.60 E-value=2.9e-05 Score=69.73 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=29.4
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+.+.-++|.|+||+||||+++.++..++++++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3356789999999999999999999999887764
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=3.5e-05 Score=70.25 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=29.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
...++|.||||+||||+++++|..+++++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 457999999999999999999999999987654
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.58 E-value=6.1e-05 Score=68.28 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=38.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc--------cC----------CchhHHHHHhcCC-CceEEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD--------VQ----------SNSDLRSLLLSMP-SRSMLVIE 300 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~--------~~----------~~~~L~~l~~~~~-~~sIlviD 300 (450)
.-++++||||+|||+++..++..+ +..++.+.... +. ....+..++.... ...+|+||
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 457899999999999986666543 55554432110 00 0012233343333 56799999
Q ss_pred ccccc
Q 013083 301 DIDCS 305 (450)
Q Consensus 301 diD~l 305 (450)
|+..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99865
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=0.00027 Score=70.75 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC---------------------chhHHHHHh---c
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS---------------------NSDLRSLLL---S 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~L~~l~~---~ 290 (450)
|++..+.++|+||||+|||+|+..+|..+ +..++.++...... ...+...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46666779999999999999999999875 55666666544211 111111111 2
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24678999999988764
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=5.5e-05 Score=66.46 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=28.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-++|.||||+||||+++.+|..+++++++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999999887665
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.50 E-value=5e-05 Score=67.96 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=28.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..|+|.|+||+||||+++.+|..+++++++.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999987755
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=8e-05 Score=73.51 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++.+..++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56667789999999999999999999875 45667776554
No 121
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.49 E-value=5e-05 Score=67.52 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=28.0
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.++|.||||+||||++++||..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5889999999999999999999999887643
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.49 E-value=5.4e-05 Score=67.59 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
++.++|.|+||+||||+++.+|..++++++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 356999999999999999999999998887653
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.48 E-value=5.8e-05 Score=66.59 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=29.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..++|.|+|||||||+++.+|..+++++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999998764
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.46 E-value=0.00027 Score=65.86 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMA 263 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA 263 (450)
|++.+.-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45556779999999999999999998
No 125
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.45 E-value=6.5e-05 Score=67.63 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=28.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH-cCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH-LKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~-l~~~~~~l~ 274 (450)
+..++|.|+|||||||+++.+|.. +++++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 356999999999999999999999 788887655
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=6.7e-05 Score=66.25 Aligned_cols=31 Identities=39% Similarity=0.719 Sum_probs=27.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..+.|.||||+||||+++.+|..++.++++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4689999999999999999999999876653
No 127
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.42 E-value=0.00038 Score=74.10 Aligned_cols=63 Identities=25% Similarity=0.317 Sum_probs=42.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC----------CchhHHHHHhcC-----------CCceEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ----------SNSDLRSLLLSM-----------PSRSMLV 298 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~----------~~~~L~~l~~~~-----------~~~sIlv 298 (450)
+.+++.||||||||+++.+++..+ +.++..+..+... ....+.+++... ....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 578899999999999999999865 6666655433321 122344444221 1357999
Q ss_pred EEccccc
Q 013083 299 IEDIDCS 305 (450)
Q Consensus 299 iDdiD~l 305 (450)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999755
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.00035 Score=69.52 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=31.8
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++.+.-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666778999999999999999999873 45666666554
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.41 E-value=0.00023 Score=71.06 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
|++...-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56667779999999999999999999987
No 130
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.38 E-value=0.0007 Score=68.04 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHHHh---c
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSLLL---S 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l~~---~ 290 (450)
|++..+.++|+||||+|||+|+..+|..+ +.++..++...-. +.+.+...+. .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667789999999999999999988765 5667766654321 1122222222 2
Q ss_pred CCCceEEEEEcccccc
Q 013083 291 MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~ 306 (450)
.....+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2467899999999885
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.37 E-value=0.00062 Score=63.70 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
-.+++.|+||+|||+++-++|..+ |.++..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 468999999999999999999876 7777655553
No 132
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.37 E-value=8.5e-05 Score=65.50 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=28.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..++|.|+||+||||+++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35889999999999999999999999887654
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.37 E-value=0.0001 Score=70.20 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=29.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
-++|.|||||||||++++||..++++++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.36 E-value=0.00019 Score=85.57 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCCc------------------------hhHHHHHhc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQSN------------------------SDLRSLLLS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~~------------------------~~L~~l~~~ 290 (450)
|++.++.++|+||||||||+|+.+++.+. |.+.+.+++.+.... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57778899999999999999999998765 678888877764211 122233444
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
...+.+||||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999998854
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00012 Score=66.44 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=28.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..|+|.||||+||||+++.+|..++++++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 45889999999999999999999999887663
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.0001 Score=65.96 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.-|+|.|+||+||||+++.+|..++.++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4688999999999999999999999887654
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00011 Score=64.37 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=26.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8899988765
No 138
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.32 E-value=0.00011 Score=65.63 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=29.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.-++|.|+||+||||+++.++..+++++++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 457899999999999999999999998877653
No 139
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=0.00031 Score=68.16 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=27.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
+..++|.||||+||||+++.++..++..++.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568899999999999999999998544555654
No 140
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.30 E-value=0.0005 Score=66.00 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556779999999999999999999754
No 141
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.29 E-value=0.0051 Score=64.86 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred ccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHH----HcC--Cc-EEEEecCccC----
Q 013083 211 ALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMAN----HLK--FD-IYDLDLTDVQ---- 279 (450)
Q Consensus 211 ~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~----~l~--~~-~~~l~~~~~~---- 279 (450)
+|-++.+++|.+.+..-- ....+.+.|+|++|+|||+||+.+++ ... ++ .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 388888888888774210 11136788999999999999999997 222 11 2233433310
Q ss_pred ------------C--------------chhHHHHHhc--CCC-ceEEEEEcccccccccccCcccccCCCCCCchhhHHh
Q 013083 280 ------------S--------------NSDLRSLLLS--MPS-RSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSG 330 (450)
Q Consensus 280 ------------~--------------~~~L~~l~~~--~~~-~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (450)
. ...+...+.. ..+ +.+|||||++... .+ .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------------~~-~ 259 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------------TI-R 259 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------------HH-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------------hh-c
Confidence 0 0112222222 133 8999999997431 11 1
Q ss_pred HHHHhhcccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhCccC--CCcHHHHHHHHhcC
Q 013083 331 LLNFIDGLWSCCSEGRIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCTASVFEQLAFNYLGISH--HHLFEQIEEMLMKV 408 (450)
Q Consensus 331 LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~--~~l~~ei~~l~~~~ 408 (450)
+. +. .+..||.||..... +.. .+..+..++++..+.++-.+|+..+..... ..+.+...++++..
T Consensus 260 ~~----~~-----~gs~ilvTTR~~~v---~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c 326 (549)
T 2a5y_B 260 WA----QE-----LRLRCLVTTRDVEI---SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS 326 (549)
T ss_dssp HH----HH-----TTCEEEEEESBGGG---GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH
T ss_pred cc----cc-----CCCEEEEEcCCHHH---HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 11 11 22345666654321 111 112335689999999999999998743322 22233345556555
Q ss_pred CCCHHHH
Q 013083 409 NVTPAEV 415 (450)
Q Consensus 409 ~~spa~i 415 (450)
+-.|--+
T Consensus 327 ~GlPLAl 333 (549)
T 2a5y_B 327 SGNPATL 333 (549)
T ss_dssp TTCHHHH
T ss_pred CCChHHH
Confidence 5555443
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=8.6e-05 Score=65.70 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHH-HcCCcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN-HLKFDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~-~l~~~~~~ 272 (450)
.-++|.||||+||||+++.++. .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999999 56655443
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.28 E-value=0.00013 Score=65.66 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.-++|.||||+||||+++.+|..++.++++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56889999999999999999999999887654
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00016 Score=65.70 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.-++|.||||+||||+++.|+..+++.+++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 46899999999999999999999998776643
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.28 E-value=0.00043 Score=69.08 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=46.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHHH---hc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSLL---LS 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l~---~~ 290 (450)
|++..+.++|+||||+|||+|+..+|..+ +..+..++..... +...+..++ ..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999998765 5566666544321 111122222 22
Q ss_pred CCCceEEEEEcccccc
Q 013083 291 MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~ 306 (450)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 3458899999999886
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.28 E-value=0.00013 Score=64.08 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.++|.|+||+||||+++.++..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999999887654
No 147
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.28 E-value=0.00011 Score=73.39 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=39.6
Q ss_pred cChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 212 LDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 212 ~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
..+.+.+.+++.+..++...+ ...++|.||||+||||++++||+.++++++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~---------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY---------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS---------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC---------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345667777777765554221 2469999999999999999999999988744
No 148
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00011 Score=65.70 Aligned_cols=31 Identities=29% Similarity=0.627 Sum_probs=27.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.||||+||||+++.+|+.+++++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4588999999999999999999999877654
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.25 E-value=0.00012 Score=65.34 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=26.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC-----CcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK-----FDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~-----~~~~~ 272 (450)
.-++|.||||+||||+++.+|..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4688999999999999999999987 66654
No 150
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.25 E-value=0.00013 Score=67.46 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=28.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.|+||+||||+++.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999988766
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.25 E-value=0.00013 Score=65.65 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=28.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.-++|.|+||+||||+++.+|..+++++++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999998877653
No 152
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.24 E-value=0.00045 Score=69.17 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC---------------------CchhHHHHHhc---
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ---------------------SNSDLRSLLLS--- 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~L~~l~~~--- 290 (450)
|++..+.++|+||||+|||+|+..+|..+ +.+++.++..... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46667789999999999999999998765 5677777763321 11223333322
Q ss_pred CCCceEEEEEcccccc
Q 013083 291 MPSRSMLVIEDIDCSI 306 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~ 306 (450)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 2467899999998875
No 153
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.23 E-value=0.00014 Score=65.30 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=28.6
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.+..+.|.||||+||||+++.||..++...+.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 34568899999999999999999987666655554
No 154
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00015 Score=66.57 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999888766
No 155
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00015 Score=67.29 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=28.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+.-++|.||||+||||+++.||..++.++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35689999999999999999999999887765
No 156
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00017 Score=66.22 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.8
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999888766
No 157
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00019 Score=66.26 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=28.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.||||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4688999999999999999999999887765
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.00034 Score=68.67 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~ 265 (450)
|++...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677999999999999999999975
No 159
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.19 E-value=0.00093 Score=65.67 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=44.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCccC---------------------CchhH-HHH---
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDVQ---------------------SNSDL-RSL--- 287 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~~---------------------~~~~L-~~l--- 287 (450)
|++.. -++++||||+|||+|+..++..+ +..+..++...-. +.+.+ ..+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 57899999999999977666544 5566666644321 11122 112
Q ss_pred H--hcCCCceEEEEEccccccc
Q 013083 288 L--LSMPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 288 ~--~~~~~~sIlviDdiD~l~~ 307 (450)
+ .....+.+||||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2 1224689999999998864
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.19 E-value=0.00023 Score=63.00 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..++|.||||+||||+++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4688999999999999999999998766553
No 161
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.18 E-value=0.00037 Score=66.07 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
+..++|.||||+||||+++.++..++...+.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4568999999999999999999999866666665544
No 162
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.00082 Score=68.31 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---------CCcEEEEecCc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---------KFDIYDLDLTD 277 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---------~~~~~~l~~~~ 277 (450)
|++...-++|+||||+|||+|+..+|-.. +..++.++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56666779999999999999999776433 23466666544
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00024 Score=64.52 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=28.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.-|+|.|+||+||||+++.++..+++++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45889999999999999999999998877654
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.13 E-value=0.00023 Score=66.42 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=28.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..|+|.|+|||||||+++.||..++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999887765
No 165
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.00036 Score=62.08 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=29.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+..+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3567899999999999999999998 888887763
No 166
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.13 E-value=0.0002 Score=63.63 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999999877
No 167
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.0012 Score=61.34 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHH----cCCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANH----LKFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~----l~~~~~~l~~~ 276 (450)
|.+.+.-++++|+||+|||+++..+|.. .+.+++.+++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5666777999999999999999877643 25666665543
No 168
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.11 E-value=0.0003 Score=69.44 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=30.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
+..++|.||+|+|||+++..+|..++..++.+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999999888864
No 169
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00016 Score=66.90 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=27.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+..|+|.||||+||||+++.||..++..++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35689999999999999999999999876554
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00039 Score=63.28 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=26.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
+..+.|.||+|+||||+++.|+..+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3568899999999999999999999775544
No 171
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.0004 Score=62.07 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.5
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
-+.|.|+||+||||+++.+++.+ |++++..+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37899999999999999999998 899888763
No 172
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.00037 Score=65.76 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=29.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+.-++|.||||+||||+++.+++.++.+++..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 356899999999999999999999998887653
No 173
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00027 Score=65.01 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=26.9
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
++|.||||+||||+++.+|..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888766
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.00047 Score=64.22 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=27.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
++.++|.||||+||+|.++.||+.++++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4678899999999999999999999887553
No 175
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.01 E-value=0.0021 Score=58.68 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=68.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc--C-Cc-----------------------------h----h
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV--Q-SN-----------------------------S----D 283 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~--~-~~-----------------------------~----~ 283 (450)
..+++|+++|.||||+|-++|-.. |..+..++...- . .+ . .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 357899999999999999999876 788887754331 0 00 0 1
Q ss_pred HHHHHhcC--CCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCCCCCcc
Q 013083 284 LRSLLLSM--PSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKEKLDPA 361 (450)
Q Consensus 284 L~~l~~~~--~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~~ld~a 361 (450)
+....... ....+|||||+-..... .-.....++..+.. .++..-+|+|+|.+ +++
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~---------------g~l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~ 166 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAY---------------DYLPLEEVISALNA----RPGHQTVIITGRGC---HRD 166 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHT---------------TSSCHHHHHHHHHT----SCTTCEEEEECSSC---CHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccC---------------CCCCHHHHHHHHHh----CcCCCEEEEECCCC---cHH
Confidence 11111222 35689999999654321 11223445555543 25667889999874 567
Q ss_pred ccCCCcceeEEEeCC
Q 013083 362 LLRPGRMDMHIHMSY 376 (450)
Q Consensus 362 LlrpgR~d~~I~~~~ 376 (450)
|+. ..|.+-+|..
T Consensus 167 l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 167 ILD--LADTVSELRP 179 (196)
T ss_dssp HHH--HCSEEEECCC
T ss_pred HHH--hCcceeeecc
Confidence 776 6777666543
No 176
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.0021 Score=60.01 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=40.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc-------cC-------------CchhHHHHHhcC---CCceE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD-------VQ-------------SNSDLRSLLLSM---PSRSM 296 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~-------~~-------------~~~~L~~l~~~~---~~~sI 296 (450)
.-++++||||+||||++..++..+ +..++.+.... +. ....+.+.+... ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 347789999999999888888766 55666553211 10 112344444432 24789
Q ss_pred EEEEccccc
Q 013083 297 LVIEDIDCS 305 (450)
Q Consensus 297 lviDdiD~l 305 (450)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999865
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.97 E-value=0.00037 Score=64.67 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=26.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
-++|.||||+||||+++.+|..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999999877665
No 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.93 E-value=0.0058 Score=68.83 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=37.9
Q ss_pred ccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHH------cCCcEEEEecCc
Q 013083 211 ALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANH------LKFDIYDLDLTD 277 (450)
Q Consensus 211 ~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~------l~~~~~~l~~~~ 277 (450)
+|-++..++|.+.+..- . ..+-+.|+||+|.|||+||+.+++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~~---d---------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---R---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---C---------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc---C---------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 77777777777766421 0 1367889999999999999999863 233345555443
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00036 Score=63.32 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=26.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
-+.|.||+|+||||+++.+|+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 898887765
No 180
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.92 E-value=0.00053 Score=61.79 Aligned_cols=29 Identities=28% Similarity=0.681 Sum_probs=25.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
-+.|.|+||+||||+++.+|+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987653
No 181
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.91 E-value=0.00056 Score=63.10 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=25.5
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
++|.||||+||+|.++.||+.++++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6789999999999999999999987654
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.90 E-value=0.00066 Score=62.51 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=27.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..+.|.||+|+||||+++.+++.+++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3588999999999999999999999877653
No 183
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.90 E-value=0.00059 Score=64.14 Aligned_cols=31 Identities=23% Similarity=0.512 Sum_probs=26.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
+.-+.|.||||+||||+++.||..++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3578899999999999999999999876543
No 184
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00062 Score=61.55 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=29.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~~~ 276 (450)
.-|.|.|+||+||||+++.++..+ +++++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 458899999999999999999999 5888877643
No 185
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.0011 Score=59.99 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCc--EEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFD--IYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~--~~~l 273 (450)
.-|+|.|+||+||||+++.++..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 458899999999999999999998763 5443
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.88 E-value=0.0005 Score=65.41 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=29.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..+.|.||+|+||||+++.+|..+++++++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 57999999999999999999999999888754
No 187
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.88 E-value=0.00058 Score=61.84 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.+.|.|++|+||||+++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6789999999999999999999999888755
No 188
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.00075 Score=60.55 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=26.7
Q ss_pred eeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|.|.|++||||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6799999999999999999999 998876643
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.84 E-value=0.0004 Score=61.91 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~ 267 (450)
-|+|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00049 Score=62.61 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.2
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.+.|.||+|+||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 577999999999999999998 888887654
No 191
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.0006 Score=62.18 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=28.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..+.|.|++||||||+++.++..+|+++++.|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 35779999999999999999999999887765
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.001 Score=60.37 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=26.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
+.-+.|.||+|+||||++++||..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999988 55434444
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.79 E-value=0.00067 Score=64.56 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH---cCCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH---LKFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~---l~~~~~~l~~ 275 (450)
.-|+|.|+||+||||+++.++.. .|++++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46889999999999999999998 6888875543
No 194
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.76 E-value=0.00098 Score=62.71 Aligned_cols=32 Identities=34% Similarity=0.384 Sum_probs=28.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..+.|.||||+||||+++.||..+++++++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 46889999999999999999999998876643
No 195
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.00082 Score=60.57 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=27.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..+.|.|++||||||+++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88887765
No 196
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.67 E-value=0.0026 Score=68.51 Aligned_cols=60 Identities=25% Similarity=0.468 Sum_probs=39.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
|..|-+--+++++++.|...+. . +.-.|++||||||||+++..+..++ +..+..+..+..
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 3344344568888888766552 1 1257899999999998766665554 556666555443
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.0019 Score=59.27 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
|++...-+.|.||+|+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556678999999999999999999854
No 198
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.64 E-value=0.014 Score=60.16 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=55.9
Q ss_pred ceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCC-------------CCCCCc
Q 013083 294 RSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNH-------------KEKLDP 360 (450)
Q Consensus 294 ~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~-------------~~~ld~ 360 (450)
+.|++|||+|.+- ....+.|+..|+.. +.. ++|+.||. ++.++|
T Consensus 296 ~~VliIDEa~~l~------------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~ 352 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPL 352 (456)
T ss_dssp ECEEEEESGGGCB------------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCH
T ss_pred ceEEEEechhhcC------------------HHHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCCh
Confidence 4799999999872 35678888888753 233 55555533 678999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhC
Q 013083 361 ALLRPGRMDMHIHMSYCTASVFEQLAFNYLG 391 (450)
Q Consensus 361 aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 391 (450)
.+++ ||.. +++++++.++..++++....
T Consensus 353 ~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 353 DLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp HHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred hHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 9999 9988 69999999999999987664
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.00043 Score=63.02 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
.-|.|.|+|||||||+++.++..++.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4588999999999999999999875443
No 200
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.62 E-value=0.012 Score=57.27 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCc
Q 013083 215 ELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTD 277 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~ 277 (450)
.+++.+.+.+...+....... . ...+..++|.||+|+||||++..||..+ |..+..+++..
T Consensus 80 ~~~~~~~~~l~~~l~~~~~~~-~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADKWQ-E-PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp THHHHHHHHHHTTSCCGGGSC-C-CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCccccc-c-cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 345555555555443222100 0 1124578899999999999999999876 45666665544
No 201
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.60 E-value=0.0012 Score=60.58 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=28.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
..+.|.|++|+|||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46889999999999999999999999887764
No 202
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=58.90 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=23.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
++-+.|.||+|+|||||++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999764
No 203
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.00099 Score=66.03 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=31.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
.-++|.||+|+|||+|+..||+.++..++..|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468899999999999999999999988888775543
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.57 E-value=0.0012 Score=60.63 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.-+.|.|++|+||||+++.++. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4578999999999999999998 888877764
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.56 E-value=0.0024 Score=75.35 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccCC---------------------chhHHHHHhc---
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQS---------------------NSDLRSLLLS--- 290 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~L~~l~~~--- 290 (450)
|++.++.++|+||||||||+|+.++|... +..++.++...... .+.+.+++..
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 67778899999999999999999988763 67788877665421 2223333332
Q ss_pred CCCceEEEEEccccccc
Q 013083 291 MPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 291 ~~~~sIlviDdiD~l~~ 307 (450)
..++.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 25688999999998865
No 206
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.56 E-value=0.0018 Score=61.31 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=27.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
..+.|.||+|+||||+++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 457899999999999999999999987765
No 207
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.00093 Score=64.52 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-CCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-KFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-~~~~~~l 273 (450)
.-|+|.|+||+||||+++.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6665544
No 208
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.53 E-value=0.0016 Score=63.74 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=30.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
+.-++|.||+|+|||+|+..+|..++..++..|.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999999888776543
No 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.51 E-value=0.0015 Score=59.55 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.6
Q ss_pred CCCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 240 AWKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 240 ~~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999885
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=60.87 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=28.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
+..+.|.|++|+||||+++.+|..+|+++++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 345789999999999999999999998887643
No 211
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.49 E-value=0.0091 Score=54.43 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=26.2
Q ss_pred ceeeeeCCCCCchH-HHHHHHHHHc--CCcEEEEe
Q 013083 243 RGYLLYGPPGTGKS-SLIAAMANHL--KFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKT-sla~alA~~l--~~~~~~l~ 274 (450)
.-+++|||.|+||| .|++++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 45789999999999 8999998875 56666664
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.47 E-value=0.0017 Score=58.12 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=22.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
..+.|.||+|+||||+++.|+...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999987654
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.47 E-value=0.0011 Score=60.37 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-CCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-KFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-~~~~~~l~ 274 (450)
.-+.|.||||+||||+++.+++.+ +..++..|
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 457799999999999999999988 66555544
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.46 E-value=0.0027 Score=56.68 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=26.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~ 274 (450)
+..++|.|+||+||||+++.+|..++ .++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 35688999999999999999999874 4454444
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.45 E-value=0.018 Score=60.81 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=48.9
Q ss_pred eEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhcccccCCCCeEEEEEcCCCC--CCCccccCCCcceeEE
Q 013083 295 SMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSCCSEGRIIIFTTNHKE--KLDPALLRPGRMDMHI 372 (450)
Q Consensus 295 sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~~~~~~iiI~TTN~~~--~ld~aLlrpgR~d~~I 372 (450)
.+|||||+..++... .+ .+...+..+-..- ..-++.+|++|.+|. .++..++. -|...|
T Consensus 345 ivvVIDE~~~L~~~~--------------~~-~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI 405 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------------GK-KVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKA--NIPTRI 405 (574)
T ss_dssp EEEEESCCTTHHHHT--------------CH-HHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEE
T ss_pred EEEEEeCHHHHhhhh--------------hH-HHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHh--hhccEE
Confidence 589999999875410 01 1222232222111 135688999999987 78888877 788889
Q ss_pred EeCCCCHHHHHHHHH
Q 013083 373 HMSYCTASVFEQLAF 387 (450)
Q Consensus 373 ~~~~p~~~~r~~l~~ 387 (450)
.+...+..+-+.++.
T Consensus 406 ~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 406 AFQVSSKIDSRTILD 420 (574)
T ss_dssp EECCSCHHHHHHHHS
T ss_pred EEEcCCHHHHHHhcC
Confidence 999988887776663
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.0015 Score=61.58 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=24.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
.-|.|.|+||+||||+++.|+..++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 468899999999999999999999976
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.0021 Score=59.64 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=29.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
|++.+..++|+||||+|||+++..+|... +..++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 55666779999999999999988887653 5556555443
No 218
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.00068 Score=61.73 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-|+|.|+||+||||+++.++..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999874
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.43 E-value=0.0015 Score=59.97 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.++++|.||+|+|||+++..++...+ .++..|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 47899999999999999999999876 6655543
No 220
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.34 E-value=0.0019 Score=58.37 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999987
No 221
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.34 E-value=0.0061 Score=55.32 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=27.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
.-+.|.||+|+||||+++.++..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 457799999999999999999976 66666664443
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.34 E-value=0.0069 Score=62.12 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=43.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCccC--------------------------Cc-hhHHHHHhcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDVQ--------------------------SN-SDLRSLLLSM 291 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~~--------------------------~~-~~L~~l~~~~ 291 (450)
++.+++.|+||+||||++..+|..+ |..+..+++.... +. ..+.+.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999987 4566666554210 11 1234455555
Q ss_pred CCceEEEEEccccc
Q 013083 292 PSRSMLVIEDIDCS 305 (450)
Q Consensus 292 ~~~sIlviDdiD~l 305 (450)
....+++||....+
T Consensus 179 ~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 179 KKADVLIIDTAGRH 192 (432)
T ss_dssp SSCSEEEEECCCSC
T ss_pred hCCCEEEEcCCCCc
Confidence 56678899887644
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.33 E-value=0.0039 Score=56.93 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.9
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999875
No 224
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.32 E-value=0.0019 Score=64.07 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.-++|.||+|+|||+++..||..++..++..|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999977766553
No 225
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.32 E-value=0.0074 Score=56.47 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=26.9
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.++++||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999988766666543
No 226
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.29 E-value=0.0093 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
-.+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 227
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.28 E-value=0.014 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.27 E-value=0.0022 Score=58.73 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
+.-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456889999999999999999998753
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.27 E-value=0.0029 Score=57.89 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEe
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLD 274 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~ 274 (450)
+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 35688999999999999999999875 4566665
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.24 E-value=0.0015 Score=66.69 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=27.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+.-++|.|+||+||||+++.++..+++.++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45688999999999999999999998765543
No 231
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.21 E-value=0.0021 Score=61.89 Aligned_cols=31 Identities=35% Similarity=0.340 Sum_probs=26.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~ 274 (450)
.-|.|.|+||+||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 6888876654
No 232
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.20 E-value=0.0026 Score=62.36 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=28.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~~ 276 (450)
.-++|.||+|+|||+|+..+|..++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578999999999999999999998777665543
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.16 E-value=0.0032 Score=57.12 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
|.++|.||+|+|||||++.|.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56899999999999999999887643
No 234
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.16 E-value=0.0031 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=22.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-+.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999864
No 235
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.0065 Score=62.25 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhcChh-HHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 214 SELKKAIMEDLDNFMNGKE-YYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 214 ~~~k~~i~~~l~~~l~~~~-~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
+.+.+.+.+.+...+.... ..... ...++.+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455666666666665321 11111 1124678899999999999999999877 6666655544
No 236
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.14 E-value=0.0029 Score=57.89 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=27.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~ 272 (450)
..|.|.||+|||||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 467899999999999999999999999986
No 237
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.11 E-value=0.025 Score=51.58 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCC---CCCceeeeeCCCCCchHHH-HHHHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGK---AWKRGYLLYGPPGTGKSSL-IAAMAN 264 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGTGKTsl-a~alA~ 264 (450)
.+|+++...+.+.+.+.+. -+..+..++.... -..+.+++.+|+|+|||.. +-.+..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 4699998888777766442 1122222332211 1136799999999999976 333343
No 238
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.012 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
-.+++.|++|+|||+|+.++.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.03 E-value=0.0033 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998864
No 240
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.01 E-value=0.019 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 241
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.01 E-value=0.0083 Score=61.59 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 214 SELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 214 ~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
..+++.+.+.+...+..+...... ...+..+++.||||+||||++..+|..+ |..+..+++...
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 345666777777666542111111 1124678999999999999999999877 666666665443
No 242
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.98 E-value=0.018 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
.+++.|++|+|||||+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0067 Score=59.15 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhhC--CCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 214 SELKKAIMEDLDNFMNGKEYYTRVG--KAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 214 ~~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.+++.+.+.+...+........+. ...+..+.|.||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666777766664322001121 2334568899999999999999999987
No 244
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.97 E-value=0.027 Score=58.86 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCC--CCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q 013083 345 GRIIIFTTNHKE--KLDPALLRPGRMDMHIHMSYCTASVFEQLAF 387 (450)
Q Consensus 345 ~~iiI~TTN~~~--~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 387 (450)
++.+|++|.++. .++..++. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 577888898886 57777776 788888999988888877765
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.96 E-value=0.0036 Score=56.91 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
++.+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45788999999999999999998764
No 246
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.95 E-value=0.024 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 247
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.94 E-value=0.021 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 248
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.92 E-value=0.0032 Score=57.28 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC--CcEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK--FDIYD 272 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~--~~~~~ 272 (450)
.-+.|.||+|+||||+++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4577999999999999999999987 44443
No 249
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.019 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999999864
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.01 Score=57.95 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 216 LKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
+++.+.+.+...+.....+ ......+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 5666666666666532200 1112234568899999999999999999877 4556655544
No 251
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.91 E-value=0.031 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
--+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999988754
No 252
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.89 E-value=0.04 Score=49.37 Aligned_cols=51 Identities=25% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCcccccChHHHHHHHHHHHHHhcChhHHhhhCCC---CCceeeeeCCCCCchHHHH
Q 013083 206 NFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA---WKRGYLLYGPPGTGKSSLI 259 (450)
Q Consensus 206 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGTGKTsla 259 (450)
+|+++...+++.+.+.+. -+..+..++....+ ..+.+++.+|+|+|||..+
T Consensus 4 ~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEM---GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAY 57 (206)
T ss_dssp SGGGSCCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHH
T ss_pred ChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHH
Confidence 466666666655555331 01112222221110 1367999999999999643
No 253
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.89 E-value=0.016 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 254
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.84 E-value=0.021 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
--+++.|++|+|||+|+.++.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 255
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.84 E-value=0.022 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
-+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 256
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.018 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.82 E-value=0.0053 Score=59.99 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=27.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
.++.+..+.|.||+|+|||||+++|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 355567799999999999999999999884444
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.81 E-value=0.0063 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...+.|.||.|+|||||+++|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4558899999999999999999987
No 259
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.80 E-value=0.026 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 260
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.80 E-value=0.04 Score=56.55 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHhcCCCceEEEEEcccccccccccCcccccCCCCCCchhhHHhHHHHhhccccc------CCCCeEEEEEc----CCC
Q 013083 286 SLLLSMPSRSMLVIEDIDCSITLENRDSKDQAGHNQGDNKVTLSGLLNFIDGLWSC------CSEGRIIIFTT----NHK 355 (450)
Q Consensus 286 ~l~~~~~~~sIlviDdiD~l~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ldg~~~~------~~~~~iiI~TT----N~~ 355 (450)
..+..+...+|+++||||.+........ .+.........||..+++...+ ...++++|+|. +.+
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~~------~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYSG------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCSS------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCCC------CCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 3444444678999999999964111000 0001112456789999974211 23567888886 234
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q 013083 356 EKLDPALLRPGRMDMHIHMSYCTASVFEQLAF 387 (450)
Q Consensus 356 ~~ld~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 387 (450)
..+-|.|+. ||+.+|+++.++.+++..|+.
T Consensus 317 ~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 317 SDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 445688888 999999999999999999984
No 261
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.79 E-value=0.021 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 262
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.76 E-value=0.005 Score=62.38 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=28.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.-++|.||+|+|||+|+..+|..++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 467899999999999999999999887766543
No 263
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.74 E-value=0.024 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.73 E-value=0.0058 Score=55.69 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..+.|.||+|+|||||+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45578999999999999999999874
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.72 E-value=0.0055 Score=56.55 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+|||||++.|++.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999999977
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.72 E-value=0.005 Score=59.32 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEE
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDL 273 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l 273 (450)
|++.+.-++|.||||+|||+|+..+|..+ |.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45556678999999999999999999876 4355444
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.72 E-value=0.0058 Score=55.87 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
++-+.|.||+|+|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998865
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.71 E-value=0.0094 Score=59.58 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhcChhHHhhh--CCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 214 SELKKAIMEDLDNFMNGKEYYTRV--GKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 214 ~~~k~~i~~~l~~~l~~~~~~~~~--g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.+++.+.+.+...+........+ ....+..+.|.||+|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345666666666666432210112 12334568899999999999999999987
No 269
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.71 E-value=0.0078 Score=64.46 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
+.-|+|.|+||+||||++++++..+ +.+++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 3458899999999999999999999 999998863
No 270
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.032 Score=49.11 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 271
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.69 E-value=0.011 Score=65.92 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCceeeeeCCCCCchHHHHHHHHH
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~ 264 (450)
.+..++|.||.|+||||+.+.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345688999999999999999875
No 272
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.67 E-value=0.025 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
-.+++.|++|+|||||+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 273
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.67 E-value=0.046 Score=53.15 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCC----CCceeeeeCCCCCchHHHHHHHHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA----WKRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGTGKTsla~alA~~ 265 (450)
.+|+++...+.+.+.+.+. -+..+..++...++ -.+.+++.+|+|+|||..+...+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4688887777776665442 11122223322211 1368999999999999876544433
No 274
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.67 E-value=0.027 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 275
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.65 E-value=0.0056 Score=57.36 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=25.7
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
+-|.||||+||||+++.||..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45889999999999999999999887654
No 276
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.64 E-value=0.011 Score=50.71 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 277
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.64 E-value=0.031 Score=61.43 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCCcccccChHHHHHHHHHHHHHhc--ChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMN--GKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~--~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~ 265 (450)
.+|+.+...+...+.+...-..+.. ...+... +.....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3577777777665554332211110 0011111 111356999999999999987777554
No 278
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.63 E-value=0.024 Score=62.46 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~ 265 (450)
++.++|.||.|+||||+.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999975
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.63 E-value=0.0075 Score=57.50 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..++|.||+|+||||+++++++.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3468899999999999999999976
No 280
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.60 E-value=0.007 Score=56.15 Aligned_cols=29 Identities=38% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 239 KAWKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 239 ~~~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.+.+.-+.|.||+|+|||||+++|+....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456688999999999999999999875
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.58 E-value=0.011 Score=57.71 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|.+.+.-++|.|+||+|||+++..+|... +.++..+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56667779999999999999999998765 456666553
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.58 E-value=0.0025 Score=57.88 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~ 268 (450)
-+.|.||+|+||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999853
No 283
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.56 E-value=0.032 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 284
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.56 E-value=0.023 Score=63.57 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~ 264 (450)
++-++|.||.|+||||+++.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999953
No 285
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.55 E-value=0.035 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999886
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.016 Score=56.93 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=29.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTD 277 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~ 277 (450)
++.+++.||+|+||||++..||..+ +..+..+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568899999999999999999876 56666666544
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.53 E-value=0.01 Score=61.61 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..++|.||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999986
No 288
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.038 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-++|.|++|+|||||+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999998743
No 289
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.48 E-value=0.047 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 290
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.46 E-value=0.0091 Score=55.66 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=25.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC--CcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK--FDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~--~~~~~l 273 (450)
.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4577899999999999999999986 455543
No 291
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.46 E-value=0.011 Score=63.36 Aligned_cols=24 Identities=46% Similarity=0.697 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999888877664
No 292
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.45 E-value=0.02 Score=58.41 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=37.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHcCC---cEEEE
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKF---DIYDL 273 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l~~---~~~~l 273 (450)
+.+++++....+.+..+ +.+ +..+ ...+++.||+|+||||++++|++.++. .++.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~~~~----------ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---IKRP----------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---HTSS----------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHcCCCHHHHHHH-HHH---HHhc----------CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 44678887776654433 322 1111 234789999999999999999998842 45544
No 293
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.43 E-value=0.0076 Score=56.15 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=28.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
..|.+.|++|||||++++.+|..+|+++++-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 3577999999999999999999999998763
No 294
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.41 E-value=0.013 Score=50.63 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999754
No 295
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.41 E-value=0.0075 Score=54.35 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred eeeeCCCCCchHHHHHHHHHHcCCcEEEEecCcc
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLKFDIYDLDLTDV 278 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~~~~~~l~~~~~ 278 (450)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888877776543
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.40 E-value=0.0074 Score=53.35 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.0
Q ss_pred CceeeeeCCCCCchHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAM 262 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~al 262 (450)
+.-+.|.||+|+|||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 445889999999999999953
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.40 E-value=0.017 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.6
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
.+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 298
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.39 E-value=0.02 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.39 E-value=0.013 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 300
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.35 E-value=0.0099 Score=53.24 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
.+|+||.|++|+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999884 55444
No 301
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.35 E-value=0.028 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 302
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.043 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-.+++.|++|+|||+|+..+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999875
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.31 E-value=0.0093 Score=59.86 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
.+..++|.||+|+||||++++|++.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568899999999999999999976
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.31 E-value=0.028 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999853
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.30 E-value=0.024 Score=55.88 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.1
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
.+.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999987
No 306
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.023 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
--++|.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358999999999999999999754
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.27 E-value=0.0091 Score=59.60 Aligned_cols=24 Identities=46% Similarity=0.649 Sum_probs=21.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.||+|+||||+++++++.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358899999999999999999987
No 308
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.27 E-value=0.037 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 309
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.25 E-value=0.02 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 310
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.24 E-value=0.011 Score=52.83 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...-+.|.||+|+||||++..++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578899999999999999999875
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.24 E-value=0.0092 Score=54.06 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=21.2
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
.+.|.||+|+||||+++.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999986
No 312
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.21 E-value=0.033 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 458999999999999999998753
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.19 E-value=0.011 Score=55.27 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~ 269 (450)
-+-|.||+|+||||+++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999988754
No 314
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.17 E-value=0.052 Score=47.84 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 315
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.036 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 316
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.14 E-value=0.033 Score=50.50 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l 273 (450)
.-++++||+|+|||+.+..++..+ +..++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 457799999999999888888776 6666555
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.12 E-value=0.025 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~ 267 (450)
-+.|.||+|+||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999875
No 318
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.11 E-value=0.012 Score=61.85 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-|+|.|+||+||||+++.+|.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999999999984
No 319
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.10 E-value=0.031 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=21.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 320
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.085 Score=46.35 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~ 264 (450)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999984
No 321
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.07 E-value=0.0046 Score=59.89 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEecCccC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLDLTDVQ 279 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~~~~~~ 279 (450)
.-+.|.||+|+||||+++.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3577999999999999999999876 445556655554
No 322
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.07 E-value=0.015 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
-.+++.|++|+|||+|+.++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998654
No 323
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.06 E-value=0.066 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~ 264 (450)
..-+++.|++|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999864
No 324
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.05 E-value=0.02 Score=58.93 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~ 275 (450)
|.+.+.-++|.|+||+|||+|+..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666779999999999999999998864 556766653
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.05 E-value=0.0067 Score=56.17 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=15.8
Q ss_pred CceeeeeCCCCCchHHHHHHHH-HHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMA-NHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA-~~l~ 267 (450)
+.-+.|.||+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3457899999999999999999 8753
No 326
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.02 E-value=0.051 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45899999999999999999764
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.01 E-value=0.0074 Score=63.22 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=40.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC--CcEEEEecCc-cC-----------------CchhHHHHHhcC--CCceEEEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK--FDIYDLDLTD-VQ-----------------SNSDLRSLLLSM--PSRSMLVI 299 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~--~~~~~l~~~~-~~-----------------~~~~L~~l~~~~--~~~sIlvi 299 (450)
+.++++.||+|+||||+++++++.+. ..++.++-.. +. ..-.+..++..+ ..|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 35799999999999999999999884 3455543221 11 011233444333 36888888
Q ss_pred Eccc
Q 013083 300 EDID 303 (450)
Q Consensus 300 DdiD 303 (450)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 8874
No 328
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.98 E-value=0.023 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 329
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.97 E-value=0.026 Score=54.95 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-+.|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999876
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.96 E-value=0.015 Score=56.21 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
+.-+.|.||+|+||||+++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345779999999999999999998853
No 331
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.96 E-value=0.019 Score=63.36 Aligned_cols=24 Identities=46% Similarity=0.697 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888877764
No 332
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.94 E-value=0.071 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
.-+++.|+||+|||+|+.++++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999997
No 333
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.93 E-value=0.017 Score=67.27 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.+.-+.|.||+|+|||||+++|.+++.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345588999999999999999999874
No 334
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.93 E-value=0.033 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 335
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.063 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 336
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.92 E-value=0.03 Score=58.46 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcChhH-HhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 215 ELKKAIMEDLDNFMNGKEY-YTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~-~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
.+.+.+.+.+...+..... +. .....++.+++.|+||+||||++..||..+ |..+..+++.
T Consensus 74 ~~~~~v~~eL~~ll~~~~~~~~-~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCC-CCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccchhc-cccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3455556666655543210 00 001224578899999999999999999876 6667666653
No 337
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.91 E-value=0.025 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 338
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.87 E-value=0.021 Score=58.56 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=30.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~ 275 (450)
|.+.+.-++|.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666779999999999999999888754 456766654
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.028 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
...+++.|++|+|||||+.++++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.82 E-value=0.022 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 341
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.80 E-value=0.032 Score=57.09 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcChhH-HhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecCcc
Q 013083 216 LKKAIMEDLDNFMNGKEY-YTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLTDV 278 (450)
Q Consensus 216 ~k~~i~~~l~~~l~~~~~-~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~~~ 278 (450)
+.+.+.+.+...+..... +. .....++.+++.|++|+||||++..+|..+ |..+..+++...
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~-~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLN-LAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCC-CCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred HHHHHHHHHHHHhcccccccc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 344555555555543210 00 011235678899999999999999999876 677777776643
No 342
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.80 E-value=0.22 Score=48.77 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhC-----CCCCceeeeeCCCCCchHHHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVG-----KAWKRGYLLYGPPGTGKSSLIA 260 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g-----~~~~rgiLL~GppGTGKTsla~ 260 (450)
.+|+++...+.+.+.+.+. -...+..++... ...++.+++.+|+|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 4688888777777666541 111222222211 1123789999999999998544
No 343
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.80 E-value=0.039 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 344
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.79 E-value=0.017 Score=53.32 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.9
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcCCcEEEEec
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLKFDIYDLDL 275 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~~~~~~l~~ 275 (450)
.+-|.|..||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 567999999999999999998 9999988774
No 345
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.79 E-value=0.032 Score=58.34 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=23.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
..|.|.|++||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999985
No 346
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.78 E-value=0.035 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56999999999999999999864
No 347
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.77 E-value=0.075 Score=46.51 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.77 E-value=0.029 Score=49.88 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=25.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
..+.+.|++|+||||++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 467899999999999999999886 45555554
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.76 E-value=0.018 Score=56.09 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 350
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.75 E-value=0.027 Score=48.75 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 351
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.70 E-value=0.094 Score=48.55 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=30.2
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCC---CCceeeeeCCCCCchHHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA---WKRGYLLYGPPGTGKSSLI 259 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGTGKTsla 259 (450)
.+|+++...+.+.+.+.+. -+..+..++...++ .++.+++.+|+|+|||...
T Consensus 29 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 4688887777666555431 11112222221111 1367999999999999753
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.68 E-value=0.035 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 353
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.68 E-value=0.062 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 354
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.68 E-value=0.018 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34567999999999999999999874
No 355
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.68 E-value=0.046 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.68 E-value=0.018 Score=61.12 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=28.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~~ 275 (450)
..|+|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4578999999999999999999986 77787774
No 357
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.67 E-value=0.064 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 358
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.66 E-value=0.029 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=9.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.65 E-value=0.015 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.6
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~ 267 (450)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999998775
No 360
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.62 E-value=0.028 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 361
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.039 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.60 E-value=0.056 Score=55.14 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhCCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 215 ELKKAIMEDLDNFMNGKEYYTRVGKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
.+++.+.+.+...+.... ..+....+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 345555566655554321 11222234568888999999999999999987 5566666554
No 363
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.59 E-value=0.055 Score=59.33 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..++|.||.|+||||+.+.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4578899999999999999998753
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.58 E-value=0.023 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+..+++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 365
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.58 E-value=0.091 Score=48.47 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=23.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
-++++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999887777655 66666664
No 366
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.55 E-value=0.076 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
--+++.|++|+|||+|++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 469999999999999999887743
No 367
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.55 E-value=0.029 Score=55.57 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|.....-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45556679999999999999999998874 666665543
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.036 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 369
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.53 E-value=0.021 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-+.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999994
No 370
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.51 E-value=0.042 Score=53.28 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcChhHHhh-h--CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecCcc
Q 013083 215 ELKKAIMEDLDNFMNGKEYYTR-V--GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLTDV 278 (450)
Q Consensus 215 ~~k~~i~~~l~~~l~~~~~~~~-~--g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~~~ 278 (450)
..++.+.+.+...+.... .. + ..+ +..+++.||+|+||||++..+|..+ +..+..+++...
T Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345566666665554321 11 1 112 4567789999999999999999877 667776666543
No 371
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.51 E-value=0.0089 Score=56.57 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=24.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc-CCcEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL-KFDIY 271 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l-~~~~~ 271 (450)
.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 357799999999999999999998 44443
No 372
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.46 E-value=0.04 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||+|+.++.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 373
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.45 E-value=0.013 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45688999999999999999998763
No 374
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.026 Score=62.34 Aligned_cols=34 Identities=38% Similarity=0.463 Sum_probs=23.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~~ 276 (450)
..+|+.||||||||+++..++..+ +..+..+..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 357899999999999887776543 4455544433
No 375
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.43 E-value=0.085 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999999875
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.43 E-value=0.014 Score=54.81 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999999876
No 377
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.42 E-value=0.04 Score=47.88 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 378
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.13 Score=55.67 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHHhc----ChhHHhhhCCCCCceeeeeCCCCCchHHHH
Q 013083 204 PMNFNTLALDSELKKAIMEDLDNFMN----GKEYYTRVGKAWKRGYLLYGPPGTGKSSLI 259 (450)
Q Consensus 204 p~~f~~l~~~~~~k~~i~~~l~~~l~----~~~~~~~~g~~~~rgiLL~GppGTGKTsla 259 (450)
+.+|+++..++.+++.+.+. .|-. ..+.+.. +..-.+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~--g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR--GIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT--SCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC--CCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHH
Confidence 34688887777666544321 0100 0111211 1223578999999999999987
No 379
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.33 E-value=0.021 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+.|.||+|+|||||++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999986
No 380
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.32 E-value=0.22 Score=53.96 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.3
Q ss_pred CceeeeeCCCCCchHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLI 259 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla 259 (450)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 578999999999999876
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.31 E-value=0.019 Score=52.93 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=25.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
.-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 346788999999999999999988 45665443
No 382
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.31 E-value=0.023 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.1
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
.+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999875
No 383
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.30 E-value=0.034 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
-.+++.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 384
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.29 E-value=0.012 Score=60.85 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..|+|.|.||+||||+++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 385
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.27 E-value=0.033 Score=57.22 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
|...+.-++|.|+||+|||+++..+|... |.++..+++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666679999999999999999888765 667766654
No 386
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.27 E-value=0.032 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
..+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 387
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.26 E-value=0.018 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999986
No 388
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.20 E-value=0.029 Score=52.30 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=22.4
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc-------CCcEEEEe
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL-------KFDIYDLD 274 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l-------~~~~~~l~ 274 (450)
-|.|.||+|+||||+++.+++.+ +.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 46788999999999999999988 56665443
No 389
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.17 E-value=0.089 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..++|.|.||+|||||+.++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999764
No 390
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.16 E-value=0.014 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998763
No 391
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.16 E-value=0.021 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.14 E-value=0.062 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
.-+++.|++|+|||+|+.++++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999975
No 393
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.14 E-value=0.024 Score=56.43 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFD 269 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~ 269 (450)
..-+.|.||+|+|||||++.|++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568899999999999999999987643
No 394
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.14 E-value=0.063 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 395
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.13 E-value=0.021 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHcC
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l~ 267 (450)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999764
No 396
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.11 E-value=0.022 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
.-+.|.||.|+|||||+++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999999763
No 397
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.10 E-value=0.045 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358899999999999999888764
No 398
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.09 E-value=0.025 Score=60.49 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999988877655
No 399
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.07 E-value=0.029 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=23.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..++|.||+|+||||++++|+....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999874
No 400
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.06 E-value=0.096 Score=50.63 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=27.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
+..+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567788999999999999999876 5566665543
No 401
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.06 E-value=0.19 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-++|.||+|+|||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468999999999999999999875
No 402
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.05 E-value=0.02 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999999774
No 403
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.04 E-value=0.039 Score=54.76 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.|+||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999865
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.03 E-value=0.035 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+++.|++|+|||+|+..+++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.03 E-value=0.024 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=23.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..+++.||+|+||||++++|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35789999999999999999999874
No 406
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.02 E-value=0.017 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.8
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45688999999999999999999763
No 407
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.02 E-value=0.02 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4558899999999999999999876
No 408
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.96 E-value=0.037 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
.-++|.|++|+|||+|+..+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.95 E-value=0.042 Score=54.52 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=26.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~ 275 (450)
..+.|.|+||+||||++.+++..+ +..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 468899999999999999999886 555554443
No 410
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.93 E-value=0.033 Score=57.97 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=30.1
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc----CCcEEEEec
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL----KFDIYDLDL 275 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l----~~~~~~l~~ 275 (450)
|.+...-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56666679999999999999999998765 456666654
No 411
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.93 E-value=0.04 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+..+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 412
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.92 E-value=0.026 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~ 265 (450)
+.-+.|.||.|+|||||++.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999996
No 413
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.92 E-value=0.23 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.8
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 688999999999999999998
No 414
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.92 E-value=0.019 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998763
No 415
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.90 E-value=0.02 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34578999999999999999998764
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.89 E-value=0.019 Score=54.41 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..+.|.||.|+|||||+++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999876
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.86 E-value=0.028 Score=48.65 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.2
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
-.+|+||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998655
No 418
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.85 E-value=0.021 Score=54.70 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||++.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 419
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.84 E-value=0.023 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+..+.|.||.|+|||||+++|+..+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45688999999999999999998763
No 420
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.82 E-value=0.052 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
..+++.|++|+|||||+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999999998863
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.80 E-value=0.039 Score=51.01 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=25.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEEEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIYDL 273 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~~l 273 (450)
.-+.|.|++|+||||+++.+++.++.++..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 4577899999999999999999998754433
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.80 E-value=0.024 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~ 265 (450)
+.-+.|.||.|+|||||+++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999996
No 423
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.79 E-value=0.033 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 424
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.047 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 425
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.76 E-value=0.033 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998743
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.75 E-value=0.031 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+.|.|+||+|||||+.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999863
No 427
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.75 E-value=0.02 Score=54.14 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.7
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578999999999999999998764
No 428
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.047 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 429
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.74 E-value=0.097 Score=59.22 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred CceeeeeCCCCCchHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMA 263 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA 263 (450)
++.++|.||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999984
No 430
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.73 E-value=0.02 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||.|+|||||+++|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999999876
No 431
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.73 E-value=0.022 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999976
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.69 E-value=0.025 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.2
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..+.|.||.|+|||||+++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999876
No 433
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.68 E-value=0.044 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
-.+++.|++|+|||+|+..+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.66 E-value=0.023 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999999764
No 435
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.66 E-value=0.056 Score=62.93 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+-|.||+|+|||||+++|.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3457899999999999999999876
No 436
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.65 E-value=0.029 Score=48.01 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 437
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.60 E-value=0.096 Score=49.45 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
.+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999875
No 438
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.59 E-value=0.055 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+..+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999874
No 439
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.58 E-value=0.027 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+..+.|.||.|+|||||+++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999876
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.56 E-value=0.048 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 441
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.55 E-value=0.026 Score=59.66 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=26.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC----CcEEEEec
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK----FDIYDLDL 275 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~----~~~~~l~~ 275 (450)
..+.|.|++|+||||++++||..++ ..+..++.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 4588999999999999999999985 34544543
No 442
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.54 E-value=0.029 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.4
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
-++|.|++|+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 443
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.52 E-value=0.19 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||||+.++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998754
No 444
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.52 E-value=0.052 Score=48.79 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+..+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 445
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.51 E-value=0.023 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||.|+|||||+++|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999876
No 446
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.50 E-value=0.023 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999999763
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.45 E-value=0.067 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=27.0
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc--CCcEEEEecC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL--KFDIYDLDLT 276 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l--~~~~~~l~~~ 276 (450)
..+++.|.+|+||||++..+|..+ +..+..+++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457789999999999999999876 5666655543
No 448
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=93.45 E-value=0.095 Score=39.94 Aligned_cols=46 Identities=9% Similarity=-0.132 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhCccCCCcHHHHHHHHhcC-CCCHHHHHHHHH
Q 013083 375 SYCTASVFEQLAFNYLGISHHHLFEQIEEMLMKV-NVTPAEVAGELM 420 (450)
Q Consensus 375 ~~p~~~~r~~l~~~~l~~~~~~l~~ei~~l~~~~-~~spa~i~~~L~ 420 (450)
|.|+.++|.+||+.++......-..++..++..+ |+|++||...+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999765332233466666655 799999987664
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.43 E-value=0.032 Score=58.49 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCCCCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 238 GKAWKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 238 g~~~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
|++....++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556679999999999999999999865
No 450
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.42 E-value=0.18 Score=46.04 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CceeeeeCCCCCchHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLI 259 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla 259 (450)
++.+++.+|+|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367999999999999743
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.42 E-value=0.033 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-++|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 452
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.42 E-value=0.038 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred eeeeeCCCCCchHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~ 264 (450)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999964
No 453
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.034 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|+|||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457799999999999999999976
No 454
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.41 E-value=0.029 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|||||||+++||...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457799999999999999999976
No 455
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.39 E-value=0.12 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+.|.|+||+|||||+.++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999999873
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.37 E-value=0.027 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
-.+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999884
No 457
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.34 E-value=0.031 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3457899999999999999999876
No 458
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.34 E-value=0.035 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|+|||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 457799999999999999999976
No 459
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.34 E-value=0.022 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~ 267 (450)
..+.|.||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999874
No 460
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.31 E-value=0.036 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+|||||.++||...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457799999999999999999876
No 461
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.29 E-value=0.041 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~ 264 (450)
-.+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999975
No 462
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.28 E-value=0.037 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.8
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|||||||+++||...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457799999999999999999976
No 463
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.28 E-value=0.033 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|+|||||+++||...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 457799999999999999999876
No 464
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.26 E-value=0.034 Score=58.28 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCCceeeeeCCCCCchHHHHHH--HHHHc
Q 013083 239 KAWKRGYLLYGPPGTGKSSLIAA--MANHL 266 (450)
Q Consensus 239 ~~~~rgiLL~GppGTGKTsla~a--lA~~l 266 (450)
++....++|.||+|+|||||++. ++...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44567799999999999999999 45543
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.19 E-value=0.038 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-|.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999987
No 466
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.18 E-value=0.061 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.3
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l 266 (450)
.+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46699999999999999999843
No 467
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.13 E-value=0.048 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.5
Q ss_pred ceeeeeCCCCCchHHHHHH-HHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAA-MANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~a-lA~~ 265 (450)
--+++.|++|+|||+|+.. +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999 5444
No 468
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.13 E-value=0.053 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 457799999999999999999876
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.13 E-value=0.051 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CceeeeeCCCCCchHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMAN 264 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~ 264 (450)
...+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999976
No 470
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.11 E-value=0.035 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999875
No 471
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.05 E-value=0.032 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+|||||+++||...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3457799999999999999999976
No 472
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.05 E-value=0.037 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+.|.||+|+|||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 457799999999999999999976
No 473
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.91 E-value=0.052 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCC
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKF 268 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~ 268 (450)
.-|.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999998754
No 474
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.90 E-value=0.18 Score=52.25 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=38.5
Q ss_pred eeeeeCCCCCchHHH-HHHHHHHcCCcEEEEecCccCCchhHHHHHhcCC-----CceEEEEEcccc
Q 013083 244 GYLLYGPPGTGKSSL-IAAMANHLKFDIYDLDLTDVQSNSDLRSLLLSMP-----SRSMLVIEDIDC 304 (450)
Q Consensus 244 giLL~GppGTGKTsl-a~alA~~l~~~~~~l~~~~~~~~~~L~~l~~~~~-----~~sIlviDdiD~ 304 (450)
-++|.|++|||||+| +..|++..+.+++.+=+.--....+..++..... +++++|.--.|.
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~ 231 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADS 231 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTS
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCC
Confidence 389999999999999 6799999877744332222223344444443332 466777655543
No 475
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.86 E-value=0.13 Score=51.73 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=41.8
Q ss_pred eeeeeCCCCCchHHHHHHHHHHc-----CCcEEEEecCcc-------------------CCc------------hhHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANHL-----KFDIYDLDLTDV-------------------QSN------------SDLRSL 287 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~l-----~~~~~~l~~~~~-------------------~~~------------~~L~~l 287 (450)
-.+|.||||||||+|+..||+.. +..++.+-+.+- .++ -.+.+.
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy 256 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR 256 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999864 444343322211 011 112334
Q ss_pred HhcCCCceEEEEEccccccc
Q 013083 288 LLSMPSRSMLVIEDIDCSIT 307 (450)
Q Consensus 288 ~~~~~~~sIlviDdiD~l~~ 307 (450)
|.......+|++|++-+...
T Consensus 257 frd~G~dVLil~DslTR~A~ 276 (427)
T 3l0o_A 257 LVEFNYDVVILLDSLTRLAR 276 (427)
T ss_dssp HHHTTCEEEEEEECHHHHHH
T ss_pred HHHcCCCEEEecccchHHHH
Confidence 55556788999999988754
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.84 E-value=0.031 Score=49.39 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHH
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~ 265 (450)
...+++.|++|+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999764
No 477
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.78 E-value=0.11 Score=52.07 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.1
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEecC
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLDLT 276 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~~~ 276 (450)
..++++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999999999999999998765 5666666643
No 478
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.74 E-value=0.033 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.3
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||.|+|||||+++|++.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.74 E-value=0.071 Score=52.90 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=24.9
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
.-+.|.||+|+|||||++.|++....+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 45789999999999999999999865543
No 480
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.74 E-value=0.049 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347789999999999999999988
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.74 E-value=0.041 Score=48.15 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-+.|.|+||+|||||+.++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999875
No 482
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.71 E-value=0.066 Score=52.35 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.4
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHcCCcEE
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHLKFDIY 271 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l~~~~~ 271 (450)
.+|+||.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 479999999999999999999875 54443
No 483
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.69 E-value=0.2 Score=51.96 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=37.6
Q ss_pred eeeeeCCCCCchHHH-HHHHHHHcCCcEEEEecCccCCchhHHHH---HhcC--CCceEEEEEccc
Q 013083 244 GYLLYGPPGTGKSSL-IAAMANHLKFDIYDLDLTDVQSNSDLRSL---LLSM--PSRSMLVIEDID 303 (450)
Q Consensus 244 giLL~GppGTGKTsl-a~alA~~l~~~~~~l~~~~~~~~~~L~~l---~~~~--~~~sIlviDdiD 303 (450)
-++|.|++|||||+| +..|++..+.+++.+=+.--....+..++ +... -.++++|.--.|
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad 229 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASAS 229 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTT
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCC
Confidence 489999999999999 67999999877543322211222333333 3222 256777765554
No 484
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.67 E-value=0.06 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
-+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999999864
No 485
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.66 E-value=0.097 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
.-+++.|++|+|||||+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999875
No 486
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.66 E-value=0.023 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.6
Q ss_pred eeeeCCCCCchHHHHHHHHHHcC
Q 013083 245 YLLYGPPGTGKSSLIAAMANHLK 267 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l~ 267 (450)
+.|.||+|+|||||+.+|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999999874
No 487
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.65 E-value=0.061 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l 266 (450)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 488
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.64 E-value=0.086 Score=55.56 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=26.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcC---CcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLK---FDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~---~~~~~l~ 274 (450)
..++|.|+||+||||+++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4588999999999999999999874 4555555
No 489
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.61 E-value=0.031 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+|||||.++||...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457799999999999999999876
No 490
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.60 E-value=0.22 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
.-++|.|+||+|||+|+..+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999997754
No 491
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.54 E-value=0.048 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--+++.|++|+|||+|+..+++.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 492
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.53 E-value=0.76 Score=42.80 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=21.4
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHc---CCcEEEEe
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHL---KFDIYDLD 274 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l---~~~~~~l~ 274 (450)
.-++++||.|+|||+.+-.++... +..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457789999999997555444433 55555554
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.52 E-value=0.065 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.1
Q ss_pred ceeeeeCCCCCchHHHHHHHHHH
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~ 265 (450)
--++|.|++|+|||+|+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999888764
No 494
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.058 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCceeeeeCCCCCchHHHHHHHHHHc
Q 013083 241 WKRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 241 ~~rgiLL~GppGTGKTsla~alA~~l 266 (450)
.+.-+.|.||.|+|||||++.|++.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34568899999999999999999976
No 495
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.45 E-value=0.049 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.7
Q ss_pred eeeeeCCCCCchHHHHHHHHHH
Q 013083 244 GYLLYGPPGTGKSSLIAAMANH 265 (450)
Q Consensus 244 giLL~GppGTGKTsla~alA~~ 265 (450)
.+++.|++|+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 496
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.43 E-value=0.58 Score=47.31 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCCcccccChHHHHHHHHHHHHHhcChhHHhhhCCC---CCceeeeeCCCCCchHHH
Q 013083 205 MNFNTLALDSELKKAIMEDLDNFMNGKEYYTRVGKA---WKRGYLLYGPPGTGKSSL 258 (450)
Q Consensus 205 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGTGKTsl 258 (450)
.+|+++...+.+.+.+.+. -+..+.-++...++ ..+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKS---GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 4688888777776665431 11222223332211 147899999999999983
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.39 E-value=0.033 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.6
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
+.-+.|.||+|+|||||++.|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4568899999999999999999876
No 498
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.34 E-value=0.05 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.0
Q ss_pred CceeeeeCCCCCchHHHHHHHHHHc
Q 013083 242 KRGYLLYGPPGTGKSSLIAAMANHL 266 (450)
Q Consensus 242 ~rgiLL~GppGTGKTsla~alA~~l 266 (450)
..-+.|.||+|||||||+++||...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3558899999999999999999865
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.33 E-value=0.1 Score=53.51 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.2
Q ss_pred ceeeeeCCCCCchHHHHHHHHHHcCCcE
Q 013083 243 RGYLLYGPPGTGKSSLIAAMANHLKFDI 270 (450)
Q Consensus 243 rgiLL~GppGTGKTsla~alA~~l~~~~ 270 (450)
.-+.|.||+|+|||||++.||+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 4578999999999999999999986543
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.28 E-value=0.11 Score=47.44 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=24.3
Q ss_pred eeeeCCCCCchHHHHHHHHHHc--CCcEEEE
Q 013083 245 YLLYGPPGTGKSSLIAAMANHL--KFDIYDL 273 (450)
Q Consensus 245 iLL~GppGTGKTsla~alA~~l--~~~~~~l 273 (450)
|.|-|+.|+||||+++.++..+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6688999999999999999998 5565544
Done!