Query 013084
Match_columns 449
No_of_seqs 460 out of 2188
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 00:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-52 2.7E-57 398.1 29.4 357 28-389 58-448 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.3E-47 5E-52 362.2 28.5 327 19-351 104-464 (476)
3 KOG1427 Uncharacterized conser 100.0 5.7E-45 1.2E-49 324.5 18.2 326 19-352 56-399 (443)
4 KOG1427 Uncharacterized conser 100.0 2.5E-41 5.4E-46 301.3 18.9 348 36-395 18-388 (443)
5 KOG0783 Uncharacterized conser 100.0 6.1E-29 1.3E-33 247.2 14.8 304 32-353 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 7.1E-26 1.5E-30 225.5 15.4 273 85-362 136-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 5E-23 1.1E-27 212.5 23.8 282 18-319 524-856 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 8.1E-23 1.8E-27 210.9 22.3 328 20-370 480-855 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 3E-12 6.5E-17 88.3 4.8 50 300-349 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.1E-11 2.3E-16 85.5 5.3 50 248-297 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 7E-11 1.5E-15 70.9 4.3 30 284-313 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 9.5E-11 2.1E-15 70.4 4.5 30 21-50 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.3E-12 2.7E-17 133.0 -7.7 151 115-312 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 5.1E-12 1.1E-16 128.7 -6.8 173 19-197 14-199 (850)
15 PF11725 AvrE: Pathogenicity f 96.0 0.13 2.9E-06 58.0 14.4 249 72-364 490-780 (1774)
16 PF11725 AvrE: Pathogenicity f 95.1 0.37 8.1E-06 54.6 13.7 287 19-353 489-815 (1774)
17 KOG3669 Uncharacterized conser 94.0 3.4 7.4E-05 42.0 16.1 108 183-306 190-299 (705)
18 KOG3669 Uncharacterized conser 92.9 13 0.00027 38.2 22.0 70 72-148 228-299 (705)
19 KOG0315 G-protein beta subunit 90.5 14 0.0003 33.9 24.2 165 115-309 73-245 (311)
20 KOG0291 WD40-repeat-containing 88.9 35 0.00076 36.3 24.8 122 19-153 298-424 (893)
21 KOG4693 Uncharacterized conser 88.6 7.3 0.00016 36.0 11.0 16 185-201 242-257 (392)
22 KOG0315 G-protein beta subunit 88.5 20 0.00043 32.9 20.2 162 16-202 6-196 (311)
23 KOG0943 Predicted ubiquitin-pr 85.8 0.11 2.3E-06 56.5 -2.6 128 71-204 374-506 (3015)
24 KOG0943 Predicted ubiquitin-pr 85.2 0.13 2.8E-06 55.9 -2.2 131 175-313 373-509 (3015)
25 COG4257 Vgb Streptogramin lyas 83.8 38 0.00083 31.7 16.0 232 79-366 62-302 (353)
26 KOG1900 Nuclear pore complex, 82.6 42 0.00092 38.0 15.1 216 84-308 93-339 (1311)
27 KOG1900 Nuclear pore complex, 81.3 89 0.0019 35.6 16.9 214 32-256 93-339 (1311)
28 KOG0278 Serine/threonine kinas 81.0 28 0.00062 32.0 11.0 139 125-309 145-287 (334)
29 KOG0646 WD40 repeat protein [G 81.0 64 0.0014 32.3 17.6 155 125-307 83-245 (476)
30 COG4257 Vgb Streptogramin lyas 80.5 51 0.0011 30.9 15.0 142 27-200 62-205 (353)
31 KOG4693 Uncharacterized conser 77.6 61 0.0013 30.2 16.7 64 80-150 80-147 (392)
32 cd00200 WD40 WD40 domain, foun 76.7 56 0.0012 29.3 34.6 147 19-202 10-164 (289)
33 PHA03098 kelch-like protein; P 76.1 42 0.00092 34.9 12.7 16 186-202 335-350 (534)
34 PRK14131 N-acetylneuraminic ac 76.1 84 0.0018 31.0 20.0 18 134-151 131-148 (376)
35 KOG0646 WD40 repeat protein [G 75.2 94 0.002 31.1 16.0 114 19-149 124-245 (476)
36 PLN02153 epithiospecifier prot 73.3 92 0.002 30.2 24.9 17 185-202 129-145 (341)
37 TIGR03300 assembly_YfgL outer 72.9 98 0.0021 30.3 13.9 136 28-200 241-376 (377)
38 PF07569 Hira: TUP1-like enhan 72.6 23 0.00051 32.1 8.5 30 123-152 12-41 (219)
39 PF07569 Hira: TUP1-like enhan 70.8 22 0.00048 32.3 7.9 34 13-46 7-40 (219)
40 KOG0291 WD40-repeat-containing 70.4 1.6E+02 0.0034 31.7 31.2 129 242-388 312-446 (893)
41 KOG0278 Serine/threonine kinas 70.2 91 0.002 28.8 13.4 81 166-262 135-218 (334)
42 smart00706 TECPR Beta propelle 69.8 11 0.00024 22.8 4.0 24 125-148 9-33 (35)
43 KOG1240 Protein kinase contain 68.0 2E+02 0.0043 32.9 15.2 120 125-256 1050-1180(1431)
44 KOG4441 Proteins containing BT 67.2 1.4E+02 0.003 31.6 13.9 57 296-360 471-530 (571)
45 PHA03098 kelch-like protein; P 67.0 1.6E+02 0.0036 30.5 18.8 18 134-152 335-352 (534)
46 PHA02713 hypothetical protein; 66.4 1.8E+02 0.0038 30.6 16.3 20 132-151 341-360 (557)
47 KOG0649 WD40 repeat protein [G 65.2 1.1E+02 0.0025 28.1 12.2 46 176-222 63-109 (325)
48 KOG1274 WD40 repeat protein [G 64.5 1.8E+02 0.004 31.8 13.8 149 184-358 14-165 (933)
49 smart00706 TECPR Beta propelle 64.4 17 0.00036 22.1 4.0 24 177-200 9-33 (35)
50 TIGR01063 gyrA DNA gyrase, A s 64.0 2.4E+02 0.0051 31.2 24.2 214 26-258 544-770 (800)
51 PHA02713 hypothetical protein; 61.5 1.2E+02 0.0026 31.9 12.2 14 189-202 346-359 (557)
52 cd00200 WD40 WD40 domain, foun 58.4 1.3E+02 0.0029 26.6 28.2 106 72-202 95-206 (289)
53 TIGR01062 parC_Gneg DNA topois 57.6 2.9E+02 0.0062 30.2 16.1 161 77-263 491-660 (735)
54 PLN02153 epithiospecifier prot 55.6 2E+02 0.0044 27.8 21.0 17 186-203 244-260 (341)
55 KOG1240 Protein kinase contain 54.2 3.9E+02 0.0085 30.7 15.9 122 19-150 1049-1180(1431)
56 PF04762 IKI3: IKI3 family; I 52.9 3.8E+02 0.0083 30.2 19.8 47 293-361 593-639 (928)
57 PF04762 IKI3: IKI3 family; I 52.3 3.9E+02 0.0085 30.2 22.8 98 186-322 592-691 (928)
58 PF12341 DUF3639: Protein of u 50.2 48 0.001 19.1 3.9 25 229-253 1-25 (27)
59 KOG4441 Proteins containing BT 49.8 1.8E+02 0.004 30.6 11.3 57 190-256 471-530 (571)
60 KOG0293 WD40 repeat-containing 48.8 2.9E+02 0.0062 27.6 16.5 26 284-309 443-470 (519)
61 PRK05560 DNA gyrase subunit A; 48.4 4.2E+02 0.0091 29.4 23.7 214 26-258 546-773 (805)
62 PRK14131 N-acetylneuraminic ac 48.0 2.8E+02 0.0061 27.3 17.1 17 186-202 131-147 (376)
63 TIGR03548 mutarot_permut cycli 47.8 2.6E+02 0.0056 26.7 13.6 18 345-362 216-233 (323)
64 PF06739 SBBP: Beta-propeller 47.1 21 0.00046 22.3 2.4 18 293-310 16-33 (38)
65 TIGR01063 gyrA DNA gyrase, A s 44.9 4.7E+02 0.01 28.9 22.9 163 79-256 545-717 (800)
66 KOG2106 Uncharacterized conser 43.3 3.9E+02 0.0084 27.5 26.5 91 20-147 213-303 (626)
67 TIGR03548 mutarot_permut cycli 42.1 3.2E+02 0.0069 26.1 13.0 17 186-203 116-132 (323)
68 KOG0307 Vesicle coat complex C 40.5 69 0.0015 35.6 6.4 56 334-389 254-321 (1049)
69 COG5308 NUP170 Nuclear pore co 39.9 2.7E+02 0.0059 30.8 10.4 64 83-151 95-160 (1263)
70 KOG1408 WD40 repeat protein [F 37.3 5.7E+02 0.012 27.7 15.3 100 24-150 138-248 (1080)
71 PRK05560 DNA gyrase subunit A; 34.9 6.7E+02 0.015 27.8 22.9 216 78-310 546-773 (805)
72 KOG0289 mRNA splicing factor [ 34.9 3.4E+02 0.0073 27.3 9.5 107 239-358 349-457 (506)
73 KOG1034 Transcriptional repres 34.0 1E+02 0.0022 29.6 5.7 57 32-97 323-381 (385)
74 PLN03215 ascorbic acid mannose 33.5 1.9E+02 0.0041 28.7 7.7 59 75-149 164-225 (373)
75 PF02239 Cytochrom_D1: Cytochr 32.0 5.1E+02 0.011 25.6 15.0 157 72-263 28-197 (369)
76 PF01436 NHL: NHL repeat; Int 31.3 1E+02 0.0022 17.5 3.4 18 135-152 5-22 (28)
77 KOG1034 Transcriptional repres 30.4 1.4E+02 0.003 28.8 5.9 53 90-150 328-382 (385)
78 PF13418 Kelch_4: Galactose ox 28.0 67 0.0014 20.8 2.6 16 29-44 4-19 (49)
79 smart00442 FGF Acidic and basi 27.6 3.4E+02 0.0073 22.1 8.6 66 125-200 3-68 (126)
80 PF07250 Glyoxal_oxid_N: Glyox 26.8 5.1E+02 0.011 23.9 12.1 72 237-310 117-190 (243)
81 PHA02790 Kelch-like protein; P 25.9 2.5E+02 0.0054 28.9 7.6 13 138-150 403-415 (480)
82 KOG1230 Protein containing rep 25.2 5.9E+02 0.013 25.6 9.3 18 291-308 233-250 (521)
83 PF00167 FGF: Fibroblast growt 24.3 3.7E+02 0.0081 21.5 9.1 65 126-200 2-66 (122)
84 PF03785 Peptidase_C25_C: Pept 23.9 1.3E+02 0.0028 22.5 3.6 34 123-156 15-49 (81)
85 PLN03215 ascorbic acid mannose 23.4 3.8E+02 0.0082 26.6 7.9 62 20-97 161-225 (373)
86 PF06433 Me-amine-dh_H: Methyl 23.4 6.3E+02 0.014 24.7 9.2 157 179-359 31-211 (342)
87 PRK11138 outer membrane biogen 23.3 7.2E+02 0.016 24.4 14.4 136 28-200 256-391 (394)
88 TIGR02658 TTQ_MADH_Hv methylam 22.4 7.5E+02 0.016 24.3 26.8 270 63-362 30-319 (352)
89 smart00442 FGF Acidic and basi 22.3 4.3E+02 0.0094 21.5 9.3 66 177-254 3-68 (126)
90 PF10168 Nup88: Nuclear pore c 22.0 1.1E+03 0.023 25.9 19.9 117 30-149 34-177 (717)
91 PF02239 Cytochrom_D1: Cytochr 21.7 7.8E+02 0.017 24.2 18.2 158 125-315 28-197 (369)
92 PF14517 Tachylectin: Tachylec 21.6 4.2E+02 0.0092 24.2 7.2 24 22-45 73-99 (229)
93 KOG1230 Protein containing rep 21.5 8.5E+02 0.018 24.6 12.8 112 134-256 124-250 (521)
94 PF04841 Vps16_N: Vps16, N-ter 21.4 8.3E+02 0.018 24.4 21.9 228 28-296 91-319 (410)
95 PLN02772 guanylate kinase 20.5 3.6E+02 0.0079 26.9 7.1 63 80-151 26-95 (398)
96 cd00058 FGF Acidic and basic f 20.2 4.7E+02 0.01 21.2 8.0 62 128-200 2-64 (123)
97 PF03785 Peptidase_C25_C: Pept 20.1 1.5E+02 0.0033 22.1 3.3 33 176-208 16-49 (81)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-52 Score=398.06 Aligned_cols=357 Identities=31% Similarity=0.558 Sum_probs=290.9
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCC-cCCeeecCC--CCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCc
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRL 104 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~-~~P~~v~~~--~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqL 104 (449)
..|...++.-..||+||+|...|||.+..+.. ..|++.+.. +...|++++||..|+++|++| |+||+||.|..|+|
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G~L 136 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDGAL 136 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccccc
Confidence 45666888999999999999999999988765 889998877 667899999999999999999 99999999999999
Q ss_pred CCCCC----------------CCcccceeecc----cCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCc
Q 013084 105 GHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (449)
Q Consensus 105 G~~~~----------------~~~~~p~~v~~----l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (449)
|.... ....+|..++. ....+|++++||++++++|+++|+||+||....+.++.+.....
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 98761 12445666665 23448999999999999999999999999988888887744433
Q ss_pred cc----ceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCc
Q 013084 165 LV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240 (449)
Q Consensus 165 ~~----p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~ 240 (449)
.. +.++... ...|+++++|.+|.++|+++|++|.||+|..||||.........+..+..+. .-..|..|+||.+
T Consensus 217 ~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~~ 294 (476)
T COG5184 217 QKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGKD 294 (476)
T ss_pred ccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCcc
Confidence 22 3333322 4579999999999999999999999999999999987766655555543321 1235788999999
Q ss_pred eEEEEeCCCCEEEEeCCCCCcCCCCCCC----CceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccC
Q 013084 241 HTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316 (449)
Q Consensus 241 hs~~l~~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~ 316 (449)
|+++|+++|++|+||.|.+||||.++.. ....|.....+....|..|++|..|+++|..+|.||+||.+..+|||.
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~ 374 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGI 374 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccC
Confidence 9999999999999999999999998221 223455556666777999999999999999999999999999999999
Q ss_pred CC--CCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCC-CCCCCCCeEeeeccCCCCc
Q 013084 317 GD--NVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSK 389 (449)
Q Consensus 317 g~--~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~-~~~~~~p~~i~~l~~~~~~ 389 (449)
.+ +.....|.++. ...++.+++||..|+++.+++|+||+||.|++||||+|. ..+...|+.+.+...++..
T Consensus 375 ~~~~~~~~~~~~~ls--~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~ 448 (476)
T COG5184 375 QEEITIDVSTPTKLS--VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHN 448 (476)
T ss_pred cccceeecCCccccc--cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCc
Confidence 88 44444444443 336799999999999999999999999999999999997 4667777777753334433
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.3e-47 Score=362.20 Aligned_cols=327 Identities=29% Similarity=0.529 Sum_probs=263.8
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCC----------------CCCcCCeeecCCC----CCcEEEEEe
Q 013084 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSALD----GHEIVSVTC 78 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~----------------~~~~~P~~v~~~~----~~~i~~i~~ 78 (449)
..|++++||+.|+++|++||.||+||.|..|+||.... +....|..|+..+ ..+++++.|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 78999999999999999999999999999999998661 2356788887622 347999999
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCccc----ceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCC
Q 013084 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT----PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (449)
Q Consensus 79 g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~----p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~g 154 (449)
|++++++++++ |+||.||....+.++.+...+... ++|+... ...|+++++|.+|.++|+++|+||.||+|..|
T Consensus 184 g~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999 999999999999998885544333 5555544 45899999999999999999999999999999
Q ss_pred cccCCCCCCcccceeeecc-cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----cccceeeeeeecCC
Q 013084 155 QLGLGTTEDSLVPQKLQAF-EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND----RLIPEKVATVDLQR 229 (449)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~-~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~----~~~p~~v~~~~~~~ 229 (449)
|||....+....+..+..+ .-..|+.|+||.+|+++|+++|++|+||.|.+|||+.+.... ...|.....+ ..
T Consensus 262 qlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~ 339 (476)
T COG5184 262 QLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SG 339 (476)
T ss_pred ccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CC
Confidence 9999887766555555432 223478999999999999999999999999999999982211 1222222222 24
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCC--CCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEE
Q 013084 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (449)
Q Consensus 230 ~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~--~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG 307 (449)
..|..|++|..|+++|..+|.||+||++..+|||..+ ......|+++.... ++.+++||..|.++.+++|+||.||
T Consensus 340 ~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t~~gsvy~wG 417 (476)
T COG5184 340 VTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIARTDDGSVYSWG 417 (476)
T ss_pred ceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeeccCCceEEec
Confidence 4589999999999999999999999999999999998 44555555555443 3999999999999999999999999
Q ss_pred cCCCCcccCCCCCCc-cccEEeec--CCCCcEEEEEcCCCeEEEEeC
Q 013084 308 WNKFGQVGVGDNVDH-CSPVQVKF--PLDQKVVQISCGWRHTLAVTE 351 (449)
Q Consensus 308 ~n~~GqLG~g~~~~~-~~p~~v~~--~~~~~v~~i~~G~~h~~al~~ 351 (449)
++++||||.++.... ..|+.+.- .....++..-|+...+++...
T Consensus 418 ~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 418 WGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred CchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 999999999877654 55666652 345677777777776666543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=5.7e-45 Score=324.49 Aligned_cols=326 Identities=29% Similarity=0.560 Sum_probs=285.9
Q ss_pred CCEEEEeeC--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEE
Q 013084 19 RPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (449)
Q Consensus 19 ~~i~~i~~G--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~w 96 (449)
.+|.-|++| ..|+++|+-+|++|.||+|..||||+++...+..|+.|+.+...+|++.+||.+|+++|+++ |+||.|
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~af 134 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAF 134 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEe
Confidence 356777765 67999999999999999999999999998899999999999999999999999999999999 999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCC-------------
Q 013084 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED------------- 163 (449)
Q Consensus 97 G~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~------------- 163 (449)
|+|.+||||.++..+....+++....+..|+.|+||.++++.|+..+.+.++|.-.+||||+++...
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred cccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 9999999999998665555555555566899999999999999999999999999999999987542
Q ss_pred -cccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceE
Q 013084 164 -SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT 242 (449)
Q Consensus 164 -~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs 242 (449)
+..|..+..+.+..|++++||.+|+++++++++||+||.+-||.||+....+...|+.+..++..+.--.++.||+..+
T Consensus 215 ~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 215 AQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred cCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 3456667788899999999999999999999999999999999999999999999999988887777788999999999
Q ss_pred EEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCC--C
Q 013084 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN--V 320 (449)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~--~ 320 (449)
+.+.+-|.+|.||.+... -++...|.++..+....+..+.|+..|.+ +..|..+..||...+|.++-+.+ .
T Consensus 295 l~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qk 367 (443)
T KOG1427|consen 295 LNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQK 367 (443)
T ss_pred eeecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccc
Confidence 999999999999986543 25667888999999888999999998876 55666899999998887654433 2
Q ss_pred CccccEEeecCCCCcEEEEEcCCCeEEEEeCC
Q 013084 321 DHCSPVQVKFPLDQKVVQISCGWRHTLAVTER 352 (449)
Q Consensus 321 ~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~ 352 (449)
....|.++..+....|..|+||..|+++|.++
T Consensus 368 ss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 368 SSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccCccccchhcceeccceeeccceEEEEEcc
Confidence 34668888888888999999999999999864
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.5e-41 Score=301.25 Aligned_cols=348 Identities=28% Similarity=0.476 Sum_probs=281.5
Q ss_pred cCCeEEEEeCCCCCccCCCCC---CCCcCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCC
Q 013084 36 SGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSS 110 (449)
Q Consensus 36 ~~g~v~~wG~n~~gqLG~~~~---~~~~~P~~v~~~~~~~i~~i~~g--~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~ 110 (449)
..|+++..|.-..-+.|..+- .+...|.++..+.+.+|+-|+.| ..|+++|+-+ |++|.||.|..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~me-gk~~~wGRNekGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDME-GKCYTWGRNEKGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecc-cceeecccCccCccCccchh
Confidence 345666666555555554332 25678999999988888888865 5789999999 99999999999999999999
Q ss_pred CcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEE
Q 013084 111 DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVA 190 (449)
Q Consensus 111 ~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~ 190 (449)
....|+.|..|...+|++.+||++|+++||++|.||.||.|.+||||.++.........+.......|..|+||.++++.
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVW 176 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEE
Confidence 99999999999999999999999999999999999999999999999998765433333333345579999999999999
Q ss_pred EecCCcEEEeeCCCCCCCCCCCCCCc--------------ccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeC
Q 013084 191 VAEDGELYGWGWGRYGNLGLGDRNDR--------------LIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 191 Lt~~G~vy~~G~n~~gqlg~~~~~~~--------------~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~ 256 (449)
|+..+.+.++|.-.|||||++..... ..|..|..+ .+..|++++||.+|+++++++++||+||.
T Consensus 177 l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~--dgvqiv~~acg~nhtvavd~nkrVysWGF 254 (443)
T KOG1427|consen 177 LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL--DGVQIVKVACGTNHTVAVDKNKRVYSWGF 254 (443)
T ss_pred eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccc--cceeeEEEeccCcceeeecCCccEEEecc
Confidence 99999999999999999999865332 122233333 37889999999999999999999999999
Q ss_pred CCCCcCCCCCCCCceeeeeecccC--CCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCC
Q 013084 257 SKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQ 334 (449)
Q Consensus 257 n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 334 (449)
+-||.||+....+...|..++.+. +.--.++.||+..++.+.+-|.||.||.+.. +-++...|.++..+...
T Consensus 255 GGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgw 328 (443)
T KOG1427|consen 255 GGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGW 328 (443)
T ss_pred ccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCc
Confidence 999999999999999999888664 3345678999999999999999999998864 33445567777777788
Q ss_pred cEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCC--CCCCCCCeEeeeccCCCCceEEeec
Q 013084 335 KVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE--SSDRNSPKIIEPLSLDGSKGQNIAS 395 (449)
Q Consensus 335 ~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~--~~~~~~p~~i~~l~~~~~~~~~~~~ 395 (449)
++..+.|+..|.++ ..|..+.+||...+|.++-|. ......|..++-| ++....+++.
T Consensus 329 nl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l--~~i~v~~Vam 388 (443)
T KOG1427|consen 329 NLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDML--EGIHVMGVAM 388 (443)
T ss_pred cCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchh--cceeccceee
Confidence 99999999988765 566789999998877765554 3456778777655 5555555443
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=6.1e-29 Score=247.22 Aligned_cols=304 Identities=26% Similarity=0.394 Sum_probs=233.4
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCC--CCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013084 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (449)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~ 109 (449)
.+++.-..||.||.|.+-.||+++......|.+|..+. +.-+.+|+.+..|++|+++. |+||+||.+..|+||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 45566688999999999999999999999999998775 45678899999999999998 9999999999999999999
Q ss_pred CCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCC-Ccccceeeecc--cCc-cEEEEEeCC
Q 013084 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE-DSLVPQKLQAF--EGV-SIKMVAAGA 185 (449)
Q Consensus 110 ~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~p~~v~~~--~~~-~i~~i~~G~ 185 (449)
...+.|..|+.|.+.++.+|+....|+++||++|-||+||.|..+|||..+.. ....|.+|... .+. .|+.|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999987765 33455555432 222 689999999
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCC-cccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCC
Q 013084 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~ 264 (449)
.|+++.+ +-.||+||.| .||||+.+... ...|..+... ...|..++|...-++++++++.+|++-+- .|.-.
T Consensus 295 ~hsVawt-~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~---~~~v~~v~a~~~ATVc~~~~~~i~~~ady--~~~k~ 367 (1267)
T KOG0783|consen 295 SHSVAWT-DTDVYSWGLN-NGQLGISDNISVVTTPRRLAGL---LSPVIHVVATTRATVCLLQNNSIIAFADY--NQVKL 367 (1267)
T ss_pred ceeeeee-cceEEEeccc-CceecCCCCCceeecchhhccc---ccceEEEEecCccEEEEecCCcEEEEecc--cceec
Confidence 9999999 4579999987 59999877643 4556555332 35799999999999999999999998753 23222
Q ss_pred CCCCCceeeeeec--cc--CCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEE
Q 013084 265 GDFKDHLVPCQLE--AL--RESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 340 (449)
Q Consensus 265 ~~~~~~~~p~~v~--~~--~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~ 340 (449)
....+......|. .+ ....+++..+.....++||+-|+||.|-.+..- + ......|.++ ..|.+|+
T Consensus 368 ~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----~~c~ftp~r~-----~~isdIa 437 (1267)
T KOG0783|consen 368 PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----TSCKFTPLRI-----FEISDIA 437 (1267)
T ss_pred CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e----eeeeccccee-----eehhhhh
Confidence 1111111111111 00 112355666777778899999999999866421 1 1122334333 2455777
Q ss_pred cCCCeEEEEeCCC
Q 013084 341 CGWRHTLAVTERQ 353 (449)
Q Consensus 341 ~G~~h~~al~~~g 353 (449)
--.+..+++++||
T Consensus 438 ~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 438 WTANSLILCTRDG 450 (1267)
T ss_pred hccceEEEEecCc
Confidence 7778899999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=7.1e-26 Score=225.53 Aligned_cols=273 Identities=22% Similarity=0.370 Sum_probs=212.7
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCC
Q 013084 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (449)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~--~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 162 (449)
+.+++..+||.||.|....||+++......|..|..+. +.-+.+|+.+..|++++++.|+||++|....|.||.++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 34444489999999999999999999999999888764 4457889999999999999999999999999999999988
Q ss_pred CcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC-CcccceeeeeeecCCC-eEEEEEecCc
Q 013084 163 DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-DRLIPEKVATVDLQRE-KMVMVACGWR 240 (449)
Q Consensus 163 ~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~-~~~~p~~v~~~~~~~~-~i~~i~~G~~ 240 (449)
....|+.|+.+.+.+|.+|+....|+++||++|-||+||.|..+|||+.+.. ....|.+|......+. .|+.+++|..
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~ 295 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKS 295 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccc
Confidence 8899999999999999999999999999999999999999999999987653 3345555544433343 7999999999
Q ss_pred eEEEEeCCCCEEEEeCCCCCcCCCCCCCC-ceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCC
Q 013084 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (449)
Q Consensus 241 hs~~l~~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 319 (449)
|+++-+ +-.||+||.| .||||..+... ...|..+.. ....|..++|...-++++++++.+|++-.-. |.-...+
T Consensus 296 hsVawt-~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~--~~k~~~n 370 (1267)
T KOG0783|consen 296 HSVAWT-DTDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYN--QVKLPFN 370 (1267)
T ss_pred eeeeee-cceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEeccc--ceecCcc
Confidence 999988 4589999985 59999876543 345654432 3345889999999999999999999986433 2222222
Q ss_pred CCccccEEeecC----CCCcEEEEEcCCCeEEEEeCCCCEEEEeCCC
Q 013084 320 VDHCSPVQVKFP----LDQKVVQISCGWRHTLAVTERQNVFSWGRGT 362 (449)
Q Consensus 320 ~~~~~p~~v~~~----~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~ 362 (449)
.+..+-+.|.-- ....+++..+...-.++|++-|.||.|=.+.
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 222222222110 0123455666666788999999999998544
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=5e-23 Score=212.49 Aligned_cols=282 Identities=23% Similarity=0.308 Sum_probs=189.8
Q ss_pred CCCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeE-EEEcCCCEEE
Q 013084 18 FRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTT-AYSESCMQVY 94 (449)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~-~l~~~~g~v~ 94 (449)
+++|++|+.|-...+++. .+|-++.-|+.. .....+++..-...+|+.+. +..|.+ +++++ |++|
T Consensus 524 ~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~-~s~~VY~~vSen-Gkif 591 (3738)
T KOG1428|consen 524 PEPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVC-ASGHVYGYVSEN-GKIF 591 (3738)
T ss_pred CCceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEe-eeeEEEEEEccC-CeEE
Confidence 489999999999888877 555555444221 11122222222334677664 444544 55566 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCc-ccceeee--
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQKLQ-- 171 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~v~-- 171 (449)
..|....- .......+..|.+..|.+++.|..|.++++.+|+||+||-|+.+|+|.-..... ..|..-.
T Consensus 592 M~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~ 663 (3738)
T KOG1428|consen 592 MGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQ 663 (3738)
T ss_pred eecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccce
Confidence 99854321 111334566788889999999999999999999999999999999997543211 1111100
Q ss_pred -----------cccCccEEEEEeCCCeEE---EE---ecCCcEEEeeCCCCCCCCCC--------CC-------------
Q 013084 172 -----------AFEGVSIKMVAAGAEHSV---AV---AEDGELYGWGWGRYGNLGLG--------DR------------- 213 (449)
Q Consensus 172 -----------~~~~~~i~~i~~G~~h~~---~L---t~~G~vy~~G~n~~gqlg~~--------~~------------- 213 (449)
-+.+..-+...||.-... +. .-.|.+..+|.++.+.+-.+ ..
T Consensus 664 e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~ 743 (3738)
T KOG1428|consen 664 EYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFS 743 (3738)
T ss_pred eecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheec
Confidence 001112222223321111 11 12456666666654422111 00
Q ss_pred ------CCcccceeeeeee-cCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEE
Q 013084 214 ------NDRLIPEKVATVD-LQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ 286 (449)
Q Consensus 214 ------~~~~~p~~v~~~~-~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 286 (449)
.....|..+.... ....++++|+||..|++.|.++++||+||+|.+||||+++......|+.+..+.+..|++
T Consensus 744 staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQ 823 (3738)
T KOG1428|consen 744 STAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQ 823 (3738)
T ss_pred ccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEE
Confidence 1112233332211 224589999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEECCCCEEEEEcCCCCcccCCCC
Q 013084 287 ISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (449)
Q Consensus 287 I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 319 (449)
|++|.+|++++..||.||.+|.-..|||+.+--
T Consensus 824 VaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 824 VAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred EecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 999999999999999999999999999997643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-23 Score=210.93 Aligned_cols=328 Identities=22% Similarity=0.315 Sum_probs=216.9
Q ss_pred CEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCC
Q 013084 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG 99 (449)
Q Consensus 20 ~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n 99 (449)
.-+.+-++....++-+.+|+||--|... .+|.-..-.. ...+... .+|++|+.|-+...|+.-. |.=|.+--+
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~n--WmEL~l~--~~IVq~SVG~D~~~~~~~A-~~G~I~~v~ 552 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNN--WMELCLP--EPIVQISVGIDTIMFRSGA-GHGWIASVD 552 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCc--eEEecCC--CceEEEEeccchhheeecc-CcceEEecc
Confidence 3345566777777888999999888643 3443222221 1222222 4799999999988887754 443433322
Q ss_pred CCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEE
Q 013084 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIK 179 (449)
Q Consensus 100 ~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 179 (449)
+....|. -+........+|+.+.+...-.-.++++|++|..|..... .....+.+..+++..|.
T Consensus 553 D~k~~~~--------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 553 DKKRNGR--------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred Ccccccc--------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceee
Confidence 2222221 1122222344677776555445678999999999864320 11123456678888999
Q ss_pred EEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCc-ccceeeeeee----cC-------CCeEEEEEecCceEE----
Q 013084 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-LIPEKVATVD----LQ-------REKMVMVACGWRHTI---- 243 (449)
Q Consensus 180 ~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~-~~p~~v~~~~----~~-------~~~i~~i~~G~~hs~---- 243 (449)
+++.|..|.++++.+|.||+||.|..+|+|.-..... ..|..-...+ .. ....+-..||.....
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 9999999999999999999999999999997544222 1121100000 00 111222233322211
Q ss_pred --EEeCCCCEEEEeCCCCCcCCCC--------C------------CC-------Cceeeeeec---ccCCCcEEEEEeCC
Q 013084 244 --SVSSSGRLYSYGWSKYGQLGHG--------D------------FK-------DHLVPCQLE---ALRESFISQISGGW 291 (449)
Q Consensus 244 --~l~~~G~vy~~G~n~~gqlG~~--------~------------~~-------~~~~p~~v~---~~~~~~i~~I~~G~ 291 (449)
.-...|.+-.+|.++.+.+--+ . +. ...-|..+. ...+.++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 1123455666666555443211 0 00 111233332 22346799999999
Q ss_pred CceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCC
Q 013084 292 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 370 (449)
Q Consensus 292 ~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~ 370 (449)
.|+++|.+|++||.+|+|.+||||.|+......|+++.+|.+..+++|++|++|++++..||+||.||.-..|||+..-
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999764
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.30 E-value=3e-12 Score=88.27 Aligned_cols=50 Identities=46% Similarity=0.922 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCCccc-CCCCCCccccEEeecCCCCcEEEEEcCCCeEEEE
Q 013084 300 DGKLYGWGWNKFGQVG-VGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV 349 (449)
Q Consensus 300 ~G~vy~wG~n~~GqLG-~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al 349 (449)
||+||+||.|.+|||| .++......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888888999999999889999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=1.1e-11 Score=85.47 Aligned_cols=50 Identities=44% Similarity=0.696 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCCcCC-CCCCCCceeeeeecccCCCcEEEEEeCCCceEEE
Q 013084 248 SGRLYSYGWSKYGQLG-HGDFKDHLVPCQLEALRESFISQISGGWRHTMAV 297 (449)
Q Consensus 248 ~G~vy~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~l 297 (449)
||+||+||.|.+|||| ..+......|+++..+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.13 E-value=7e-11 Score=70.93 Aligned_cols=30 Identities=53% Similarity=0.887 Sum_probs=26.0
Q ss_pred EEEEEeCCCceEEEECCCCEEEEEcCCCCc
Q 013084 284 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (449)
Q Consensus 284 i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (449)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.12 E-value=9.5e-11 Score=70.36 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.1
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCc
Q 013084 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQ 50 (449)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gq 50 (449)
|++|+||..|+++|++||+||+||+|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-12 Score=132.98 Aligned_cols=151 Identities=32% Similarity=0.592 Sum_probs=133.2
Q ss_pred ceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecC
Q 013084 115 PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAED 194 (449)
Q Consensus 115 p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~ 194 (449)
|..+..+.-.++.+++||..|+++++..|+++.||.|.+||+|.+.......|..++.+.+.+..+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 4444455556899999999999999999999999999999999985555445999999999999999999999999885
Q ss_pred CcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeee
Q 013084 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (449)
Q Consensus 195 G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~ 274 (449)
|+++++.+|.++.+|....+|+|+........|.
T Consensus 84 ----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~ 117 (850)
T KOG0941|consen 84 ----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPL 117 (850)
T ss_pred ----------------------------------------------chhhcchhccccccCCcccccccccccccccccH
Confidence 8999999999999999999999998788888888
Q ss_pred eecccCCCcEEEEEeCCCceEEEEC-CCCEEEEEcCCCC
Q 013084 275 QLEALRESFISQISGGWRHTMAVTS-DGKLYGWGWNKFG 312 (449)
Q Consensus 275 ~v~~~~~~~i~~I~~G~~h~~~lt~-~G~vy~wG~n~~G 312 (449)
.+..+-...+++|+||-.|+++.-. -|++|..|.+..|
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 8888888889999999999988754 5899999998877
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-12 Score=128.67 Aligned_cols=173 Identities=27% Similarity=0.457 Sum_probs=136.7
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEc-------CCC
Q 013084 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSE-------SCM 91 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~-------~~g 91 (449)
.+|++++||..|++++...|.+++||.|.+||+|.+.......|.+++.+.+.+..+|++|..|+++++. + +
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e-~ 92 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE-G 92 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchh-c
Confidence 4789999999999999999999999999999999985544444999999999999999999999887776 7 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEc-CCcEEEEECCCCC--cccCCCCCCcccce
Q 013084 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTV-EGEVQSWGRNQNG--QLGLGTTEDSLVPQ 168 (449)
Q Consensus 92 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~-~G~vy~wG~n~~g--qlG~~~~~~~~~p~ 168 (449)
.++.+|....+|+|+....+...|..+..+-+..+.+|+|+..|+++.-. -|++|.+|.+..| ++- ....+.
T Consensus 93 ~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~-----s~s~~~ 167 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIV-----SLSGED 167 (850)
T ss_pred cccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceee-----ccchhh
Confidence 99999999999999977777778888877778899999999999987654 5999999988876 110 000110
Q ss_pred eee---cccCccEEEEEeCCCeEEEEecCCcE
Q 013084 169 KLQ---AFEGVSIKMVAAGAEHSVAVAEDGEL 197 (449)
Q Consensus 169 ~v~---~~~~~~i~~i~~G~~h~~~Lt~~G~v 197 (449)
... ......+..+.+|.+.+..|...+.-
T Consensus 168 ~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 168 LLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred hcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 001 01122456678888888888766543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=96.04 E-value=0.13 Score=57.97 Aligned_cols=249 Identities=19% Similarity=0.238 Sum_probs=125.7
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecc---cC-----CCC--------------EEEE
Q 013084 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LH-----SLR--------------VKQI 129 (449)
Q Consensus 72 ~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~---l~-----~~~--------------i~~i 129 (449)
+..+|....+.-++.+.+ |+||.-=..... .. .....+.+... +. ..+ +++=
T Consensus 490 ~A~~VgLs~drLFvADse-GkLYsa~l~~~~---~~--~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd 563 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSE-GKLYSADLPAAQ---DN--EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKD 563 (1774)
T ss_pred hhhheeecCCeEEEEeCC-CCEEeccccccc---CC--CcceEeccccccccccccccccceeeccccCCCCeeeEEEec
Confidence 577788877776666665 999975332221 11 11112222211 10 011 2222
Q ss_pred EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCC---
Q 013084 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYG--- 206 (449)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~g--- 206 (449)
..|..|+++|+++|.=|.-|+|-...|=..+..-...+..- ..-.-+..|..-.++|. +|+|+.|-....+
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p-----~~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAP-----APHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWKD 637 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCC-----ChHHhhccccccceeec-cceEeeecCcchhhhh
Confidence 45666777777777666666665544433222211111000 01112345666778888 5999999643321
Q ss_pred -------CC--CCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeec
Q 013084 207 -------NL--GLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (449)
Q Consensus 207 -------ql--g~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~ 277 (449)
|| |.........--+|..+.. ..+--.|+-|.+|.++++.--.-+..| ..++
T Consensus 638 ~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i-~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------~~l~ 698 (1774)
T PF11725_consen 638 AGVKDIDQLKRGLDGNAYVLKDGKVKRLSI-NQEHPSIAHGDNNVFALPQRRNKVELG------------------DALE 698 (1774)
T ss_pred ccCcCHHHHhccccCCceEecCCceeeeec-ccCCCccccCCCcccccccccCCCCCC------------------cccc
Confidence 11 1111111111111211110 112223444445555544333223222 2345
Q ss_pred ccCCCcEEEEE-eCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCC-CCcEEEEEcCCCe-EEEEeCCCC
Q 013084 278 ALRESFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGWRH-TLAVTERQN 354 (449)
Q Consensus 278 ~~~~~~i~~I~-~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i~~G~~h-~~al~~~g~ 354 (449)
.+.+..|+.++ .+.++.++|++.|++-..= . ...|+.+..+. ...|++|++-..| .+|++.+|+
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~ 765 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGE 765 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCCCc
Confidence 55666677766 4778999999999886631 1 11255543331 3689999998775 568999999
Q ss_pred EEE-----EeCCCCC
Q 013084 355 VFS-----WGRGTNG 364 (449)
Q Consensus 355 v~~-----wG~n~~g 364 (449)
+|. |=.+..+
T Consensus 766 Lf~~~k~~WQ~~~~~ 780 (1774)
T PF11725_consen 766 LFRLPKEAWQGNAEG 780 (1774)
T ss_pred eeecCHHHhhCcccC
Confidence 995 6555544
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.11 E-value=0.37 Score=54.61 Aligned_cols=287 Identities=18% Similarity=0.241 Sum_probs=144.2
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeee--------------cCC-CC-----CcEEEEEe
Q 013084 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--------------SAL-DG-----HEIVSVTC 78 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v--------------~~~-~~-----~~i~~i~~ 78 (449)
+...+|.....+-++.+.+|+||+--... .+..+..-...|... ..| .+ .-+++=..
T Consensus 489 a~A~~VgLs~drLFvADseGkLYsa~l~~---~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~ 565 (1774)
T PF11725_consen 489 AQAQSVGLSNDRLFVADSEGKLYSADLPA---AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQ 565 (1774)
T ss_pred hhhhheeecCCeEEEEeCCCCEEeccccc---ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccC
Confidence 35677777777888899999999532221 111111111112111 111 00 11233344
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCccc---ceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCc
Q 013084 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT---PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQ 155 (449)
Q Consensus 79 g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~---p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gq 155 (449)
|..|++.|.++ +.=|.-|||-.-.|=..+..-... |.+- ..+-.|+.-.++|. +|+|+.|-....+-
T Consensus 566 GQ~Hs~aLde~-~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~--------~~ldl~r~G~v~L~-~G~i~~wD~ttq~W 635 (1774)
T PF11725_consen 566 GQRHSHALDEQ-GSQLQPGWNLSDALVLDNTRGLPKPPAPAPH--------EILDLGRAGLVGLQ-DGKIQYWDSTTQCW 635 (1774)
T ss_pred Cceeecccccc-CCccCCCCcccceeEeeccCCCCCCCCCChH--------Hhhccccccceeec-cceEeeecCcchhh
Confidence 56666666655 566666666544433322211111 1111 12235666678887 59999996544321
Q ss_pred ccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCC-CCCCCCCCCCCc---------ccceeeeee
Q 013084 156 LGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-YGNLGLGDRNDR---------LIPEKVATV 225 (449)
Q Consensus 156 lG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~-~gqlg~~~~~~~---------~~p~~v~~~ 225 (449)
-..+. ..|.++.-|.+....+..+|+|--.--+. +..+-++..... ..-..+..+
T Consensus 636 ~~~~~---------------kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl 700 (1774)
T PF11725_consen 636 KDAGV---------------KDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGL 700 (1774)
T ss_pred hhccC---------------cCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCC
Confidence 11100 01222223333333333344433221111 111111111111 111223333
Q ss_pred ecCCCeEEEEE-ecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCc-eEEEECCCCE
Q 013084 226 DLQREKMVMVA-CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH-TMAVTSDGKL 303 (449)
Q Consensus 226 ~~~~~~i~~i~-~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h-~~~lt~~G~v 303 (449)
+ ...|..++ .+.++.++|++.|++-..= .-|. ..|.....+. ..|++|+.=..| -+|++.+|+|
T Consensus 701 ~--~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g~---------p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 701 E--DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPGR---------PVPLSRPGLS-GEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred C--cCcceeEEEEcCCceEEeccCCcccccc--CCCC---------CccCCCCCCC-cchhheeeccccceeEecCCCce
Confidence 3 44565554 3668899999999887642 1111 2222223333 348899988774 4689999999
Q ss_pred EE-----EEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCC
Q 013084 304 YG-----WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQ 353 (449)
Q Consensus 304 y~-----wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g 353 (449)
|. |=.+..+ .......++|.+|...+|..+....+|.+.+.-++
T Consensus 767 f~~~k~~WQ~~~~~------~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 767 FRLPKEAWQGNAEG------DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eecCHHHhhCcccC------CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 97 4333322 11124567778888899999999999988877443
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.00 E-value=3.4 Score=42.04 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=69.5
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC-ceEEEEeCCCCEE-EEeCCCCC
Q 013084 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW-RHTISVSSSGRLY-SYGWSKYG 260 (449)
Q Consensus 183 ~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~-~hs~~l~~~G~vy-~~G~n~~g 260 (449)
.|.....+|..+|++|.= -|.......-.--++.. ...++.+|++|. .-..+++.+|.|| -.|-....
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~---~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVIC---PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecC---CCCccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 566777889999999852 23222221111111111 122689999999 6778999999965 57766666
Q ss_pred cCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEE
Q 013084 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW 306 (449)
Q Consensus 261 qlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~w 306 (449)
+-|..= .+...|..... ++.|+.|....-+||.+|.+|.-
T Consensus 260 p~GdsW-kdI~tP~~a~~-----~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 260 PEGDSW-KDIVTPRQALE-----PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCchh-hhccCcccccc-----eEEEEeccceEEEEecCCcEEEE
Confidence 665432 23333333221 88999999999999999999863
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.87 E-value=13 Score=38.19 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=49.0
Q ss_pred cEEEEEecC-CeeEEEEcCCCEEE-EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEE
Q 013084 72 EIVSVTCGA-DHTTAYSESCMQVY-SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (449)
Q Consensus 72 ~i~~i~~g~-~~~~~l~~~~g~v~-~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~w 148 (449)
++.+|+.|. .-..+++.+ |.|| --|-....+.|..= .+..+|. ..+ .++.|+.|....-+||.+|+||.=
T Consensus 228 ~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp~GdsW-kdI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNPEGDSW-KDIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeC-CcEEEEecccccCCCCchh-hhccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 667889998 7665 45655555544322 2233332 222 289999999999999999999864
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.50 E-value=14 Score=33.91 Aligned_cols=165 Identities=14% Similarity=0.222 Sum_probs=78.7
Q ss_pred ceeecccCC--CCEEEEEe--cCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEE
Q 013084 115 PLPIKALHS--LRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVA 190 (449)
Q Consensus 115 p~~v~~l~~--~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~ 190 (449)
|.|+..+.+ .+|..|.. -..-.+-=.+||.+-.|---. -++ ++........+-+-+.-...+.+.
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~----------qR~~~~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSC----------QRNYQHNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-ccc----------chhccCCCCcceEEecCCcceEEe
Confidence 444444332 35655543 333334445789988886322 111 111111111112223334455566
Q ss_pred EecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceE--EEEeCCCCEEEEeCCCCCcCCCCCCC
Q 013084 191 VAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT--ISVSSSGRLYSYGWSKYGQLGHGDFK 268 (449)
Q Consensus 191 Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs--~~l~~~G~vy~~G~n~~gqlG~~~~~ 268 (449)
=+.+|.|++|-.... .-.....|+. ...|.+++...+-+ ++.++.|+.|+|-.-. ..+.
T Consensus 142 ~dqsg~irvWDl~~~------~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~------~~~~ 202 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGEN------SCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN------HQTA 202 (311)
T ss_pred ecCCCcEEEEEccCC------ccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEccC------CCcc
Confidence 688999999963321 1122233332 23566666666544 4678899999997533 1222
Q ss_pred CceeeeeecccCCCcEEEEE--eCCCceEEEECCCCEEEEEcC
Q 013084 269 DHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 269 ~~~~p~~v~~~~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n 309 (449)
....|..--...+..|.+.- -...|.+.-..|.+|++|-..
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 23333222111222343322 223333444456667777533
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.93 E-value=35 Score=36.29 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeec-CCCCCcEEEEEecCCeeEEEE--cCCCEE
Q 013084 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS-ALDGHEIVSVTCGADHTTAYS--ESCMQV 93 (449)
Q Consensus 19 ~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~-~~~~~~i~~i~~g~~~~~~l~--~~~g~v 93 (449)
.=|-+++.+.+ .++++...|.-.+.|...-|||..=+-.....-.+.. .++ ++..++...+-.++.| +| |+|
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD-gKV 374 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED-GKV 374 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-CcE
Confidence 33445555533 4566777888888998888888753321111101111 111 3555555555333333 56 888
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCC
Q 013084 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN 153 (449)
Q Consensus 94 ~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~ 153 (449)
-+|-....-+ .-+.-+.-.+...+++..-....+..+-||+|-+|--..+
T Consensus 375 KvWn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 375 KVWNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EEEeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 8886443211 1122222334456677777777777888999999976543
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=88.63 E-value=7.3 Score=36.00 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=12.8
Q ss_pred CCeEEEEecCCcEEEee
Q 013084 185 AEHSVAVAEDGELYGWG 201 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~G 201 (449)
..|+.++- +|++|.+|
T Consensus 242 RSHS~fvY-ng~~Y~FG 257 (392)
T KOG4693|consen 242 RSHSTFVY-NGKMYMFG 257 (392)
T ss_pred cccceEEE-cceEEEec
Confidence 46777665 89999998
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.47 E-value=20 Score=32.92 Aligned_cols=162 Identities=20% Similarity=0.355 Sum_probs=83.0
Q ss_pred CCCCCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCC---CC----------------CCCCcCCeeecCCCC--Cc
Q 013084 16 APFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGH---GD----------------AEDRLSPTQLSALDG--HE 72 (449)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~---~~----------------~~~~~~P~~v~~~~~--~~ 72 (449)
++...+..+++|..|++-+- ..|..+--=.-..+|... .. .-....|.++..+++ ..
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc
Confidence 34478999999999998664 334433222223333211 00 001233444444432 34
Q ss_pred EEEEE--ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCcEEEEEEcCCcEEEE
Q 013084 73 IVSVT--CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSW 148 (449)
Q Consensus 73 i~~i~--~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~--G~~h~~~lt~~G~vy~w 148 (449)
|..|. |-+.-.+-=.+| |.+-.|---. +. -++..... ..|..|.. ...+.+.-+.+|+|+.|
T Consensus 86 VtaVgF~~dgrWMyTgseD-gt~kIWdlR~---~~--------~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSED-GTVKIWDLRS---LS--------CQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred eEEEEEeecCeEEEecCCC-ceEEEEeccC---cc--------cchhccCC--CCcceEEecCCcceEEeecCCCcEEEE
Confidence 44443 333333434455 8888885322 11 11111111 23444443 44566777889999999
Q ss_pred ECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeE--EEEecCCcEEEeeC
Q 013084 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHS--VAVAEDGELYGWGW 202 (449)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~--~~Lt~~G~vy~~G~ 202 (449)
--..+ .-.....|.. +..|.+++...+-+ ++.++.|++|+|-.
T Consensus 152 Dl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 152 DLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 64332 1112223332 24567766665554 56788999999963
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=0.11 Score=56.54 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=85.5
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC--CCcccce-eecccCCCCEEEEEecCcEEEEEEcCCcEEE
Q 013084 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS--SDLFTPL-PIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (449)
Q Consensus 71 ~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~--~~~~~p~-~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~ 147 (449)
.+++.|.+-.+-.+++..+ |++|.|-+...--|-..-. .+...|. ....+.+.+|+.+++..-..-++|++|+|-+
T Consensus 374 n~~I~I~A~s~el~Alhrk-GelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRK-GELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CeeEEeehhHHHHHHHhhC-CceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 4577777767777888888 9999999876544332111 2222232 1234567899999999999999999999999
Q ss_pred EECCCCCcccCCCCC--CcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCC
Q 013084 148 WGRNQNGQLGLGTTE--DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204 (449)
Q Consensus 148 wG~n~~gqlG~~~~~--~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~ 204 (449)
|=. .+|.+... ....-+++ ...++.+++..|-..|.++..+|..+|-||---
T Consensus 453 WlD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 943 12222111 11111122 234567788888889999999999999999543
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.13 Score=55.89 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred CccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCC--CCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEE
Q 013084 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLG--DRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLY 252 (449)
Q Consensus 175 ~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~--~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy 252 (449)
..++..|.+-.+-.++|..+|++|.|-|.+.--+... .......|.- ..+...+++|+.+++..--.-++|++|+|.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~-a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDA-AFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCcc-ceecccCCeeEEeecCceeeeeeecCCchh
Confidence 4578888888888899999999999999876544432 1122223322 233445789999999999999999999999
Q ss_pred EEeCCC----CCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCc
Q 013084 253 SYGWSK----YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (449)
Q Consensus 253 ~~G~n~----~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (449)
+|=+-. .-.|.+ ..-+++ ......+++..|...|.++..++.-+|-||--.+.|
T Consensus 452 sWlDEcgagV~fkLa~------ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 452 SWLDECGAGVAFKLAH------EAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hHHhhhhhhhhhhhhh------hhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 985421 111111 111111 122334566677788999999999999999755544
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.82 E-value=38 Score=31.73 Aligned_cols=232 Identities=17% Similarity=0.150 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CcEEEEEEcCCcEEEEECCC-CC
Q 013084 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQ-NG 154 (449)
Q Consensus 79 g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---~~h~~~lt~~G~vy~wG~n~-~g 154 (449)
+.-|.++...| |.||.-+.. .+.+|+-+.. .-+++.+..| .-|.+++..||..|..-... -+
T Consensus 62 ~ap~dvapapd-G~VWft~qg-~gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 62 SAPFDVAPAPD-GAVWFTAQG-TGAIGHLDPA------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCccccccCCC-CceEEecCc-cccceecCCC------------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 34566777788 999965543 2444443221 1134444433 25778888888888774432 11
Q ss_pred cccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCC-CCCCCCCCCCCcccceeeeeeecCCCeEE
Q 013084 155 QLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-YGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (449)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~-~gqlg~~~~~~~~~p~~v~~~~~~~~~i~ 233 (449)
.++..+-+....|. -.+.+-+.-.+.+++.+|+||.-|.+- +|.|.-........|..
T Consensus 128 R~dpkt~evt~f~l---------p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------ 186 (353)
T COG4257 128 RLDPKTLEVTRFPL---------PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------ 186 (353)
T ss_pred EecCcccceEEeec---------ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------
Confidence 22111111111111 133444556678899999999988532 44443222211111111
Q ss_pred EEEecCceEEEEeCCCCEEEEe--CCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCC
Q 013084 234 MVACGWRHTISVSSSGRLYSYG--WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 234 ~i~~G~~hs~~l~~~G~vy~~G--~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 311 (449)
..+.-.-++.+-+|+||.-- .|.-..+..-+. .+..+..... ...| ...+-.+..|++|.-=++ .
T Consensus 187 --qG~gpyGi~atpdGsvwyaslagnaiaridp~~~----~aev~p~P~~-----~~~g-sRriwsdpig~~wittwg-~ 253 (353)
T COG4257 187 --QGGGPYGICATPDGSVWYASLAGNAIARIDPFAG----HAEVVPQPNA-----LKAG-SRRIWSDPIGRAWITTWG-T 253 (353)
T ss_pred --CCCCCcceEECCCCcEEEEeccccceEEcccccC----CcceecCCCc-----cccc-ccccccCccCcEEEeccC-C
Confidence 12334568899999999762 222222211111 1222222221 0111 123344556777764332 2
Q ss_pred CcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEE--EeCCCCCCC
Q 013084 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFS--WGRGTNGQL 366 (449)
Q Consensus 312 GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~--wG~n~~gqL 366 (449)
|+|..-+..... ...-++|.. +. .-.++.++..|.||. |+.|.-+|+
T Consensus 254 g~l~rfdPs~~s-W~eypLPgs-~a------rpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 254 GSLHRFDPSVTS-WIEYPLPGS-KA------RPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred ceeeEeCccccc-ceeeeCCCC-CC------CcceeeeccCCcEEeeccccCceeec
Confidence 455543332221 333344421 10 124567788899997 788777776
No 26
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=42 Score=38.03 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=102.7
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCC--CCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCc-ccCCC
Q 013084 84 TAYSESCMQVYSWGWGDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQ-LGLGT 160 (449)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqLG~~~~--~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gq-lG~~~ 160 (449)
+.++-| .+||.|-.++.+++-.-+. .....-..++.-.+..+-.| .|.++|.+.-+|+..|-..... .+...
T Consensus 93 aWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 678888 9999999888766543222 11111111222122222222 4999999999999998433211 11111
Q ss_pred CCCcccceeeecccCccEEEEEeCCCeEEEEe-cCCcEEEeeCC----CCCC-C---CCC-CCCCcccceeeeeeecCCC
Q 013084 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA-EDGELYGWGWG----RYGN-L---GLG-DRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt-~~G~vy~~G~n----~~gq-l---g~~-~~~~~~~p~~v~~~~~~~~ 230 (449)
.... -.+ ..++..|..|.+-.+-=++++ +||.||-.-.. =+++ + -+. ..-....|..+.......+
T Consensus 168 f~~~---~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS---FKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc---eee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 111 123445555554443334433 44444422110 0111 0 000 0011234442222213356
Q ss_pred eEEEEEecCceEE--EEeCCCCEEEEeCCCCCcCCCCCCCC---------ceeeeeecccCCCcEEEEE------eCCCc
Q 013084 231 KMVMVACGWRHTI--SVSSSGRLYSYGWSKYGQLGHGDFKD---------HLVPCQLEALRESFISQIS------GGWRH 293 (449)
Q Consensus 231 ~i~~i~~G~~hs~--~l~~~G~vy~~G~n~~gqlG~~~~~~---------~~~p~~v~~~~~~~i~~I~------~G~~h 293 (449)
.|.+|+......+ .+++.|.|-+|=....|+-+.-.... ...-..+....-.+|++|+ .-+-|
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l~ 323 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDLH 323 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCccccccee
Confidence 8999999887665 56788887776555555543221100 0000011111112355554 34568
Q ss_pred eEEEECCC-CEEEEEc
Q 013084 294 TMAVTSDG-KLYGWGW 308 (449)
Q Consensus 294 ~~~lt~~G-~vy~wG~ 308 (449)
.+|+|..| ++|.-|.
T Consensus 324 LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 324 LVAITSTGVRLYFSTS 339 (1311)
T ss_pred EEEEecCCeEEEEecc
Confidence 89999988 5776554
No 27
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.32 E-value=89 Score=35.64 Aligned_cols=214 Identities=15% Similarity=0.108 Sum_probs=101.5
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCC--CcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC-CCcCCCC
Q 013084 32 VALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF-GRLGHGN 108 (449)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~-gqLG~~~ 108 (449)
+-++.|.++|.|=.++.+++..-+... ...--.+..-.+..+-.| .|.+++.+. -+|+..|--.. .+.+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~-~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATP-VEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEeccc-ceEEEEEEEeccccCcccc
Confidence 458899999999999877765433221 111111111122222222 478888888 89999984322 1111111
Q ss_pred CCCcccceeecccCCCCEEEEEecCcEEEEEE-cCCcEEEEE----CCCCCcccC-----CCCCCcccceeeecc--cCc
Q 013084 109 SSDLFTPLPIKALHSLRVKQIACGDSHCLAVT-VEGEVQSWG----RNQNGQLGL-----GTTEDSLVPQKLQAF--EGV 176 (449)
Q Consensus 109 ~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt-~~G~vy~wG----~n~~gqlG~-----~~~~~~~~p~~v~~~--~~~ 176 (449)
..+. ..-...+..|..|.+-++--++++ +||.||-.= .+-+++-.. ...-....|..+..+ ...
T Consensus 168 f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 111123445555554333333333 555554432 111111000 000122345433222 355
Q ss_pred cEEEEEeCCCeEE--EEecCCcEEEeeCCCCCCCCCCCCCC---------cccceeeeeeecCCCeEEEEE------ecC
Q 013084 177 SIKMVAAGAEHSV--AVAEDGELYGWGWGRYGNLGLGDRND---------RLIPEKVATVDLQREKMVMVA------CGW 239 (449)
Q Consensus 177 ~i~~i~~G~~h~~--~Lt~~G~vy~~G~n~~gqlg~~~~~~---------~~~p~~v~~~~~~~~~i~~i~------~G~ 239 (449)
.|++|+......+ .+++.|.|-+|-....|+-+.-.-.. ..... +........|++|+ .-+
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~--~~~~s~f~~IvsI~~l~~~es~~ 321 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKN--PLDDSVFFSIVSISPLSASESND 321 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccc--cCCCcccceeEEecccCcccccc
Confidence 8999998887765 46778887777555544433210000 00000 00011112455543 345
Q ss_pred ceEEEEeCCC-CEEEEeC
Q 013084 240 RHTISVSSSG-RLYSYGW 256 (449)
Q Consensus 240 ~hs~~l~~~G-~vy~~G~ 256 (449)
-|.+++|..| ++|.-|.
T Consensus 322 l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 322 LHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eeEEEEecCCeEEEEecc
Confidence 6899999988 5776554
No 28
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=81.00 E-value=28 Score=31.96 Aligned_cols=139 Identities=19% Similarity=0.393 Sum_probs=73.2
Q ss_pred CEEEE-EecCcEEEEE-EcCCcEEEEECCCCCcccCCCCCCcccceeeeccc-CccEEEEEe-CCCeEEEEecCCcEEEe
Q 013084 125 RVKQI-ACGDSHCLAV-TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAA-GAEHSVAVAEDGELYGW 200 (449)
Q Consensus 125 ~i~~i-~~G~~h~~~l-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~-~~~i~~i~~-G~~h~~~Lt~~G~vy~~ 200 (449)
.|+.+ -|-.+|+++- ++++.|-.|-.-.. +.+..++ +..|..+.. -..+.+-+...+.|-.|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccC--------------cEEEEEecCCCCcceeeccCCCEEEEecCceeEEe
Confidence 45554 5777888776 67899999965321 1111111 123333322 23344445555667788
Q ss_pred eCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccC
Q 013084 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 280 (449)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~ 280 (449)
-.+.++.| ..+..|..|....+..++-+-|+.| +++.+|.+-.+.--.++. .
T Consensus 211 daksf~~l-----Ks~k~P~nV~SASL~P~k~~fVaGg--------ed~~~~kfDy~TgeEi~~--------------~- 262 (334)
T KOG0278|consen 211 DAKSFGLL-----KSYKMPCNVESASLHPKKEFFVAGG--------EDFKVYKFDYNTGEEIGS--------------Y- 262 (334)
T ss_pred ccccccce-----eeccCccccccccccCCCceEEecC--------cceEEEEEeccCCceeee--------------c-
Confidence 77766655 3455677666555444442223222 355666665544333322 0
Q ss_pred CCcEEEEEeCCCceEEEECCCCEEEEEcC
Q 013084 281 ESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 281 ~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (449)
.+=.-|.-|++=.+-+|++|+-|+-
T Consensus 263 ----nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 263 ----NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ----ccCCCCceEEEEECCCCceeeccCC
Confidence 0112244466667777888877754
No 29
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=80.97 E-value=64 Score=32.29 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=75.4
Q ss_pred CEEEEEecC-cEE-EEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEe--cCCcEEEe
Q 013084 125 RVKQIACGD-SHC-LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (449)
Q Consensus 125 ~i~~i~~G~-~h~-~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt--~~G~vy~~ 200 (449)
.+..+++.. .|. ++=+..|++|.|--+..--|-. ..... ..|..+....+-+.+++ +||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAHY--QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhhc--cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455565544 333 3334889999996554211110 00111 13555555555555554 78999999
Q ss_pred eCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceE--EE--EeCCCCEEEEeCCCCCcCCCCCCCCceeeeee
Q 013084 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT--IS--VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (449)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs--~~--l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 276 (449)
-.-. +-+......|.++..+......|+++.+|..-+ .+ ..+|..+-.|--.. | ..-..+
T Consensus 151 ~l~~-----lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g----------~LLlti 214 (476)
T KOG0646|consen 151 LLTD-----LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-G----------VLLLTI 214 (476)
T ss_pred EEEe-----ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-c----------eeeEEE
Confidence 5322 111222225555555554456788888776531 11 12233333332111 0 111112
Q ss_pred cccCCCcEEEEEeCCCceEEEECCCCEEEEE
Q 013084 277 EALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (449)
Q Consensus 277 ~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG 307 (449)
..+...+...+.-+..+.++=+++|++|..=
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 2222222333455677777778888888743
No 30
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.48 E-value=51 Score=30.92 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCC-CCCCcC
Q 013084 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG-DFGRLG 105 (449)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n-~~gqLG 105 (449)
+.-|-++...||.||.- ..-.+.+|+=+... -+-.+++.-.+..- |.+++-.| |..|.+-.. .-++++
T Consensus 62 ~ap~dvapapdG~VWft-~qg~gaiGhLdP~t-Gev~~ypLg~Ga~P--------hgiv~gpd-g~~Witd~~~aI~R~d 130 (353)
T COG4257 62 SAPFDVAPAPDGAVWFT-AQGTGAIGHLDPAT-GEVETYPLGSGASP--------HGIVVGPD-GSAWITDTGLAIGRLD 130 (353)
T ss_pred CCccccccCCCCceEEe-cCccccceecCCCC-CceEEEecCCCCCC--------ceEEECCC-CCeeEecCcceeEEec
Confidence 45688899999999944 33344555422111 11112222222222 33444444 555554322 122222
Q ss_pred CCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCC-CCcccCCCCCCcccceeeecccCccEEEEEeC
Q 013084 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ-NGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG 184 (449)
Q Consensus 106 ~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~-~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G 184 (449)
..+-.-..-|.+ .+.+-+.-.+.+++.+|+||.-|.+- +|.|-.........|.+ ..+
T Consensus 131 pkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~ 189 (353)
T COG4257 131 PKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGG 189 (353)
T ss_pred CcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCC
Confidence 211111111111 22333445678899999999988643 23221111111111111 223
Q ss_pred CCeEEEEecCCcEEEe
Q 013084 185 AEHSVAVAEDGELYGW 200 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~ 200 (449)
.-.-++.|-||+||.-
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4556889999999976
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=77.55 E-value=61 Score=30.16 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCeeEEEEcCCCEEEEEeC-CC-CCCcCCCCCCCcccceeecccCCCCEEEEE--ecCcEEEEEEcCCcEEEEEC
Q 013084 80 ADHTTAYSESCMQVYSWGW-GD-FGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGR 150 (449)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~-n~-~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~--~G~~h~~~lt~~G~vy~wG~ 150 (449)
..|+++.-++ ++|.||- |+ .|.+-. -..+.|..-. ....+|.-.. +-+.|++++- ....|.+|-
T Consensus 80 YGHtvV~y~d--~~yvWGGRND~egaCN~---Ly~fDp~t~~-W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEYQD--KAYVWGGRNDDEGACNL---LYEFDPETNV-WKKPEVEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEEcc--eEEEEcCccCcccccce---eeeecccccc-ccccceeeecCCccCCceeeEE-CcEEEEecC
Confidence 4577777655 9999983 33 232211 1111111110 0111233332 3468888776 346888884
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=76.73 E-value=56 Score=29.25 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCEEEEeeCC--CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013084 19 RPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~--~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~ 94 (449)
.+|..++.-. ...++...+|.++.|-..... ....+... ...+..+..... +.++...+ |.|+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~i~ 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKGH-TGPVRDVAASADGTYLASGSSD-KTIR 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEecC-CcceeEEEECCCCCEEEEEcCC-CeEE
Confidence 5566666654 334444468999999654321 11111111 122334433332 34444446 8999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc-EEEEEEc-CCcEEEEECCCCCcccCCCCCCcccceeeec
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~-h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (449)
.|-..... ....+.. ....|..+..... ..++... +|.|+.|-....... ..+.
T Consensus 77 i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~- 132 (289)
T cd00200 77 LWDLETGE-----------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------TTLR- 132 (289)
T ss_pred EEEcCccc-----------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------EEec-
Confidence 98644321 1111111 1224666665543 3444444 899999865421110 1111
Q ss_pred ccCccEEEEEeCC-CeEEEEec-CCcEEEeeC
Q 013084 173 FEGVSIKMVAAGA-EHSVAVAE-DGELYGWGW 202 (449)
Q Consensus 173 ~~~~~i~~i~~G~-~h~~~Lt~-~G~vy~~G~ 202 (449)
.....|..+.... ...++... +|.|+.|-.
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 1122355555544 23333333 888988854
No 33
>PHA03098 kelch-like protein; Provisional
Probab=76.14 E-value=42 Score=34.88 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.3
Q ss_pred CeEEEEecCCcEEEeeC
Q 013084 186 EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~ 202 (449)
.|+++. -+|+||++|-
T Consensus 335 ~~~~~~-~~~~lyv~GG 350 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGG 350 (534)
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455554 4789999994
No 34
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=76.12 E-value=84 Score=31.02 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.1
Q ss_pred cEEEEEEcCCcEEEEECC
Q 013084 134 SHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (449)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 35
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=75.20 E-value=94 Score=31.13 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCC--CcEEEEEecCCe--eEEE--EcCC
Q 013084 19 RPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADH--TTAY--SESC 90 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~i~~g~~~--~~~l--~~~~ 90 (449)
+.|..+.....-+++++ +||.|++|=--.- -+..+...|.++..+.+ ..|.++.+|..- +.++ ..|
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D- 197 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED- 197 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC-
Confidence 45666666666666666 6777777742211 11222335556655554 568888887663 1111 223
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEE
Q 013084 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (449)
Q Consensus 91 g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG 149 (449)
..+-+|-- ..+. . -..+.......-..+.-+..++++=+++|.+|..-
T Consensus 198 ~t~k~wdl------S~g~---L--Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 198 RTIKLWDL------SLGV---L--LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ceEEEEEe------ccce---e--eEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 34444421 1110 0 01111111112333445667778888889888653
No 36
>PLN02153 epithiospecifier protein
Probab=73.34 E-value=92 Score=30.18 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.1
Q ss_pred CCeEEEEecCCcEEEeeC
Q 013084 185 AEHSVAVAEDGELYGWGW 202 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~G~ 202 (449)
..|++++. ++++|++|-
T Consensus 129 ~~~~~~~~-~~~iyv~GG 145 (341)
T PLN02153 129 TFHSMASD-ENHVYVFGG 145 (341)
T ss_pred eeeEEEEE-CCEEEEECC
Confidence 35666654 789999984
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=72.87 E-value=98 Score=30.35 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCC
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~ 107 (449)
....++...+|.++++-....-++-.........|... ..+.++.+.+ |.|+++
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~--------------~~~vyv~~~~-G~l~~~----------- 294 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVD--------------DNRLYVTDAD-GVVVAL----------- 294 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEe--------------CCEEEEECCC-CeEEEE-----------
Q ss_pred CCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCe
Q 013084 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (449)
Q Consensus 108 ~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h 187 (449)
+...-...-....+.............+.++.+.+|.||.+ +...-..--.+......-...-+.-.++
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~-----------d~~tG~~~~~~~~~~~~~~~sp~~~~~~ 363 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWL-----------SREDGSFVARLKTDGSGIASPPVVVGDG 363 (377)
T ss_pred ECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCccccCCEEECCE
Q ss_pred EEEEecCCcEEEe
Q 013084 188 SVAVAEDGELYGW 200 (449)
Q Consensus 188 ~~~Lt~~G~vy~~ 200 (449)
.++.+.||+||++
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
No 38
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.62 E-value=23 Score=32.13 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCCEEEEEecCcEEEEEEcCCcEEEEECCC
Q 013084 123 SLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (449)
Q Consensus 123 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~ 152 (449)
+.++..+.|...+.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 347888999999999999999999996544
No 39
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.77 E-value=22 Score=32.25 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.2
Q ss_pred cCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCC
Q 013084 13 TTAAPFRPVLLISAGASHSVALLSGNIVCSWGRG 46 (449)
Q Consensus 13 ~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n 46 (449)
++.....+++.+.|-..+.++||++|.+|+|=-.
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4455567888899999999999999999999643
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.43 E-value=1.6e+02 Score=31.66 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=70.6
Q ss_pred EEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeec-ccCCCcEEEEEeCCCceEEEE--CCCCEEEEEcCCCCcccCCC
Q 013084 242 TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE-ALRESFISQISGGWRHTMAVT--SDGKLYGWGWNKFGQVGVGD 318 (449)
Q Consensus 242 s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~I~~G~~h~~~lt--~~G~vy~wG~n~~GqLG~g~ 318 (449)
++++...|.-.++|...-|||..-.......-.+.+ ... .+..++-..+-.++.| +||+|-+|-...-
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------- 382 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVWNTQSG------- 382 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEEeccCc-------
Confidence 345567788889999888998765433222211111 111 2444444444333333 5677777754431
Q ss_pred CCCccccEEeecCC---CCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCC
Q 013084 319 NVDHCSPVQVKFPL---DQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGS 388 (449)
Q Consensus 319 ~~~~~~p~~v~~~~---~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~ 388 (449)
.--+.+.. .....++..-.+..+-..-||.|-+|-...+-.. .+-....|.....+.+|.+
T Consensus 383 ------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 383 ------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred ------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCCceeeeEEEEcCC
Confidence 11222221 1234555566666666667999999976655433 2344566666667777743
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=70.23 E-value=91 Score=28.81 Aligned_cols=81 Identities=11% Similarity=0.295 Sum_probs=41.8
Q ss_pred cceeeecccCccEEE-EEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC-ceE
Q 013084 166 VPQKLQAFEGVSIKM-VAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW-RHT 242 (449)
Q Consensus 166 ~p~~v~~~~~~~i~~-i~~G~~h~~~L-t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~-~hs 242 (449)
.|..+..-.+ -|+. +-|-.+|+++- ++++.|-.|-.- +-+.+..+.+. ..|.++.... .+.
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~sL~~~-s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQSLEFN-SPVTSLEVSQDGRI 198 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEEEEecC-CCCcceeeccCCCE
Confidence 3444443333 3544 47888888776 788999999531 22223222221 1333332222 233
Q ss_pred EEEeCCCCEEEEeCCCCCcC
Q 013084 243 ISVSSSGRLYSYGWSKYGQL 262 (449)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gql 262 (449)
+.+...+.|-.|-.+.++.|
T Consensus 199 lTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EEEecCceeEEeccccccce
Confidence 33444455667777777666
No 42
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=69.85 E-value=11 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.6
Q ss_pred CEEEEEecC-cEEEEEEcCCcEEEE
Q 013084 125 RVKQIACGD-SHCLAVTVEGEVQSW 148 (449)
Q Consensus 125 ~i~~i~~G~-~h~~~lt~~G~vy~w 148 (449)
.+++|++|. +...+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 799999999 899999999999963
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=67.99 E-value=2e+02 Score=32.88 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred CEEEEEecCcE-EEEEE--cCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE-EeCCCeEEEE-ecCCcEEE
Q 013084 125 RVKQIACGDSH-CLAVT--VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAV-AEDGELYG 199 (449)
Q Consensus 125 ~i~~i~~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i-~~G~~h~~~L-t~~G~vy~ 199 (449)
.+.+++....| +++++ +||.|-.|-.-. -.|.+.. ......-...+.++.++ .|++.+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s---~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS---ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce---eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 56688888888 66665 789999996433 2222111 11111222345566666 4666665554 78898888
Q ss_pred eeCCCCCCCCCCCCCCcccceeeeeeecCC-CeEEEEEecCc-----eEEEEeCCCCEEEEeC
Q 013084 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQR-EKMVMVACGWR-----HTISVSSSGRLYSYGW 256 (449)
Q Consensus 200 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~-~~i~~i~~G~~-----hs~~l~~~G~vy~~G~ 256 (449)
.+-+.+. .....+..+..+.... ..++++.+-.. -.++.|..+.+..|+-
T Consensus 1125 ~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8755431 1112222221111111 13444432221 2346678888888874
No 44
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=67.17 E-value=1.4e+02 Score=31.55 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=31.6
Q ss_pred EEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEE---EEcCCCeEEEEeCCCCEEEEeC
Q 013084 296 AVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ---ISCGWRHTLAVTERQNVFSWGR 360 (449)
Q Consensus 296 ~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~---i~~G~~h~~al~~~g~v~~wG~ 360 (449)
+..-++.||+.|-... +- ...-+..--|...+... +.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~-------~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TS-------ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CC-------ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455789999984432 10 01112222233333333 3445666667778899999985
No 45
>PHA03098 kelch-like protein; Provisional
Probab=66.96 E-value=1.6e+02 Score=30.49 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=12.0
Q ss_pred cEEEEEEcCCcEEEEECCC
Q 013084 134 SHCLAVTVEGEVQSWGRNQ 152 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (449)
.|+++ .-+|+||.+|-..
T Consensus 335 ~~~~~-~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGIY 352 (534)
T ss_pred cceEE-EECCEEEEEeCCC
Confidence 34444 3478999998543
No 46
>PHA02713 hypothetical protein; Provisional
Probab=66.35 E-value=1.8e+02 Score=30.64 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=13.2
Q ss_pred cCcEEEEEEcCCcEEEEECC
Q 013084 132 GDSHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 132 G~~h~~~lt~~G~vy~wG~n 151 (449)
...+..+..-+|+||.+|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344445558999999964
No 47
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=65.24 E-value=1.1e+02 Score=28.08 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=27.1
Q ss_pred ccEEEEEeCCCeEEEEecCCcEEEeeCCCCCC-CCCCCCCCcccceee
Q 013084 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN-LGLGDRNDRLIPEKV 222 (449)
Q Consensus 176 ~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gq-lg~~~~~~~~~p~~v 222 (449)
.+|-.++.-+.|.+ ..-||+||.|=+++.-. ++....-....|..+
T Consensus 63 gpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 35666666655544 34579999999998655 444333333344433
No 48
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=64.53 E-value=1.8e+02 Score=31.80 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCc-ccceeeeeeecCCCeEEEEEecCceEEEEeCCCC--EEEEeCCCCC
Q 013084 184 GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-LIPEKVATVDLQREKMVMVACGWRHTISVSSSGR--LYSYGWSKYG 260 (449)
Q Consensus 184 G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~-~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~--vy~~G~n~~g 260 (449)
+....++++.+|+ |.+-.+..|-.-.-..... ..|..+.. .++.|..|+|-..|.+.-++++. +|.++....+
T Consensus 14 ~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred CceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Q ss_pred cCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEE
Q 013084 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 340 (449)
Q Consensus 261 qlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~ 340 (449)
-+ +.....-.++++ +.-+|+..+.|..++.--=..........+.........-.+..
T Consensus 90 ~i---------------------L~Rftlp~r~~~-v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 90 TI---------------------LARFTLPIRDLA-VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred ce---------------------eeeeeccceEEE-EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Q ss_pred cCCCeEEEEeCCCCEEEE
Q 013084 341 CGWRHTLAVTERQNVFSW 358 (449)
Q Consensus 341 ~G~~h~~al~~~g~v~~w 358 (449)
.-.+..++.+-||+|++|
T Consensus 148 p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCCCEEEEEecCceEEEE
No 49
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=64.35 E-value=17 Score=22.06 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEEEeCC-CeEEEEecCCcEEEe
Q 013084 177 SIKMVAAGA-EHSVAVAEDGELYGW 200 (449)
Q Consensus 177 ~i~~i~~G~-~h~~~Lt~~G~vy~~ 200 (449)
.+++|++|. +...+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888999999999964
No 50
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=63.96 E-value=2.4e+02 Score=31.25 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=104.0
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCe--eecCCCCCcEEEEEec-----CCeeEEEEcCCCEEEEEeC
Q 013084 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (449)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~i~~g-----~~~~~~l~~~~g~v~~wG~ 98 (449)
....+.++++++|++|..=.. ++-.......-.|. .+....+.+|+.+.+- ..+.+++|++ |.+.-.-.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~-GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN-GVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC-CEEEEEEh
Confidence 345567889999999988322 12111111111221 2333455667776652 2356777777 87776543
Q ss_pred CCCCCcCCCCCCCcccceeecccCCCCEEEEE--ecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCc
Q 013084 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (449)
Q Consensus 99 n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (449)
+.+-.... ..-..+..-.+..++.+. ...++.+++|++|++|.+-...-...+....... .+..-++.
T Consensus 620 ~~~~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E 689 (800)
T TIGR01063 620 TEFSNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNED 689 (800)
T ss_pred HHhhhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCC
Confidence 33211000 000001111233455443 3446789999999999997665444443222111 12222455
Q ss_pred cEEEEEe--CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEE--ecCceEEEEeCCCCEE
Q 013084 177 SIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISVSSSGRLY 252 (449)
Q Consensus 177 ~i~~i~~--G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~G~~hs~~l~~~G~vy 252 (449)
+|+.+.. ...+.+++|++|.+.-.-..++-....+. .......+......++.+. -.....++++++|++.
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~-----kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~l 764 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG-----KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLI 764 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC-----cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEE
Confidence 6766654 23467788888877655433221111100 0111111111112343332 2334577888888887
Q ss_pred EEeCCC
Q 013084 253 SYGWSK 258 (449)
Q Consensus 253 ~~G~n~ 258 (449)
.+-.++
T Consensus 765 rf~~~e 770 (800)
T TIGR01063 765 RTSVQD 770 (800)
T ss_pred EeeHhh
Confidence 765443
No 51
>PHA02713 hypothetical protein; Provisional
Probab=61.54 E-value=1.2e+02 Score=31.92 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=10.2
Q ss_pred EEEecCCcEEEeeC
Q 013084 189 VAVAEDGELYGWGW 202 (449)
Q Consensus 189 ~~Lt~~G~vy~~G~ 202 (449)
.+..-+|+||++|-
T Consensus 346 ~~~~~~g~IYviGG 359 (557)
T PHA02713 346 SLAVIDDTIYAIGG 359 (557)
T ss_pred eEEEECCEEEEECC
Confidence 34445899999994
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=58.45 E-value=1.3e+02 Score=26.64 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=50.7
Q ss_pred cEEEEEecCC-eeEEEEc-CCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-cEEEEEEc-CCcEEE
Q 013084 72 EIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQS 147 (449)
Q Consensus 72 ~i~~i~~g~~-~~~~l~~-~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~-~h~~~lt~-~G~vy~ 147 (449)
.|..+..... ..++... + +.|+.|-...... ...+. .....|..+.... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC-----------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE-----------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4555555443 2333344 5 8999986442111 01111 1122466666555 33344444 899999
Q ss_pred EECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeC
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~ 202 (449)
|-...... ...+. .....|..+....+ ..++...+|.++.|-.
T Consensus 162 ~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 162 WDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 86532110 00111 11123555544443 4555556888888854
No 53
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=57.57 E-value=2.9e+02 Score=30.18 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=85.6
Q ss_pred EecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCcEEEEEEcCCcEEEEECCCCC
Q 013084 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNG 154 (449)
Q Consensus 77 ~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~g 154 (449)
..-...++++|++ |-|-.--...+. +.-+..-.+..++.+.. ..++.+++|++|++|.+-.+.-.
T Consensus 491 i~~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP 557 (735)
T TIGR01062 491 IPKEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP 557 (735)
T ss_pred ccCcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC
Confidence 3456678888888 877644322221 11222223445555543 44568999999999999765542
Q ss_pred cccCCCCCCccccee--eecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 155 QLGLGTTEDSLVPQK--LQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 155 qlG~~~~~~~~~p~~--v~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
.|.+. -.|.. +..-++.+|+.+.+... +.+++|+.|..+-.-.+.+-....+ -..+..+. .+.
T Consensus 558 -~GR~a----GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~Ra-------GKgvi~Lk-~~d 624 (735)
T TIGR01062 558 -SARGQ----GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKA-------GKALINLP-ENA 624 (735)
T ss_pred -cCccC----CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcC-------CeEEEEeC-CCC
Confidence 12211 12222 22235667888776543 4788888987776543332211110 00111111 122
Q ss_pred eEEEE--EecC-ceEEEEeCCCCEEEEeCCCCCcCC
Q 013084 231 KMVMV--ACGW-RHTISVSSSGRLYSYGWSKYGQLG 263 (449)
Q Consensus 231 ~i~~i--~~G~-~hs~~l~~~G~vy~~G~n~~gqlG 263 (449)
.++.+ ..+. .+.++++++|++..+-.++--+++
T Consensus 625 ~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 625 SVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 33321 1233 257789999999988765544443
No 54
>PLN02153 epithiospecifier protein
Probab=55.55 E-value=2e+02 Score=27.78 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=11.6
Q ss_pred CeEEEEecCCcEEEeeCC
Q 013084 186 EHSVAVAEDGELYGWGWG 203 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~n 203 (449)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 3555544 6899999953
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=54.21 E-value=3.9e+02 Score=30.71 Aligned_cols=122 Identities=22% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCEEEEeeCCCc-eEEEE--cCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEE-ecCCeeEEEEcCCCEEE
Q 013084 19 RPVLLISAGASH-SVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT-CGADHTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~~~-~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~-~g~~~~~~l~~~~g~v~ 94 (449)
..+.++++...| +++++ +||.|-+|-.- ...|.+... +..-+- ...+.++..+. |++.+.+++..++|.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~--k~~~~~~s~-rS~lty--s~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR--KLEGEGGSA-RSELTY--SPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeeh--hhhcCccee-eeeEEE--eccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 456688888888 77777 89999999542 233332111 111111 11233444443 56666666665559999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccC-CCCEEEEEec----CcE-EEEEEcCCcEEEEEC
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALH-SLRVKQIACG----DSH-CLAVTVEGEVQSWGR 150 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~-~~~i~~i~~G----~~h-~~~lt~~G~vy~wG~ 150 (449)
..+-+.+.+ ......-..+..+. ...++++-+- ..| .+..|..+.+..|+.
T Consensus 1124 ~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1124 VLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 887665411 00011111111111 1134444321 223 456677888999974
No 56
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.90 E-value=3.8e+02 Score=30.22 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=33.0
Q ss_pred ceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCC
Q 013084 293 HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 293 h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n 361 (449)
+.+.|+++|++|+ |. ..+ ...+.++.....|-++.|.+-.+...=-+
T Consensus 593 ~~~GLs~~~~Ly~---n~---------------~~l----a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYA---NS---------------RLL----ASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEE---CC---------------EEE----ecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 6788888999996 11 111 15778888888888888887777766443
No 57
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.33 E-value=3.9e+02 Score=30.15 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=57.2
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCC-CCCcCCC
Q 013084 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS-KYGQLGH 264 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n-~~gqlG~ 264 (449)
.+.+.|+++|++|+=+ ..+ ..++.++.....|-++-|.+-.+...=-+ ....+
T Consensus 592 ~~~~GLs~~~~Ly~n~------------------~~l------a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l-- 645 (928)
T PF04762_consen 592 RVLFGLSSNGRLYANS------------------RLL------ASNCTSFAVTDSFLLFTTTQHTLKFVHLNSSVEDL-- 645 (928)
T ss_pred eEEEEECCCCEEEECC------------------EEE------ecCCceEEEEcCEEEEEecCceEEEEECcCchhhc--
Confidence 3688899999999521 111 13788888888898888888777776554 11111
Q ss_pred CCCCCceeeeeecc-cCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCc
Q 013084 265 GDFKDHLVPCQLEA-LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (449)
Q Consensus 265 ~~~~~~~~p~~v~~-~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 322 (449)
..+..... ..+..+..|.-|..-..++-++-+|.. |+-.|+.+.+
T Consensus 646 ------~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVL-------QmPRGNLEtI 691 (928)
T PF04762_consen 646 ------EIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVL-------QMPRGNLETI 691 (928)
T ss_pred ------ccccCccccccccccccCccCCEEEEEeCCCceEEE-------EcCCCchhhh
Confidence 01100000 023346666667666666666655554 6666665543
No 58
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=50.16 E-value=48 Score=19.10 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCeEEEEEecCceEEEEeCCCCEEE
Q 013084 229 REKMVMVACGWRHTISVSSSGRLYS 253 (449)
Q Consensus 229 ~~~i~~i~~G~~hs~~l~~~G~vy~ 253 (449)
+++|..|++|.....+.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3689999999999999998886654
No 59
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=49.82 E-value=1.8e+02 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=32.6
Q ss_pred EEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEE---EEecCceEEEEeCCCCEEEEeC
Q 013084 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM---VACGWRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 190 ~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~---i~~G~~hs~~l~~~G~vy~~G~ 256 (449)
+..-++.||+.|-... + .....++..+......+. +.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~---------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-T---------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-C---------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445899999993321 1 111113333333333333 4446666667777899999985
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.77 E-value=2.9e+02 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEEeCCCceEEE--ECCCCEEEEEcC
Q 013084 284 ISQISGGWRHTMAV--TSDGKLYGWGWN 309 (449)
Q Consensus 284 i~~I~~G~~h~~~l--t~~G~vy~wG~n 309 (449)
|.+-..|.+-.++. .+|++||.|-.-
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEcc
Confidence 45555666656666 479999999754
No 61
>PRK05560 DNA gyrase subunit A; Validated
Probab=48.44 E-value=4.2e+02 Score=29.37 Aligned_cols=214 Identities=14% Similarity=0.090 Sum_probs=104.5
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCe--eecCCCCCcEEEEEecC-----CeeEEEEcCCCEEEEEeC
Q 013084 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWGW 98 (449)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~i~~g~-----~~~~~l~~~~g~v~~wG~ 98 (449)
....+.+++++.|++|..=... |-.......-.|. .+....+.+|+.+.+-. ...++++++ |.+.---.
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~-GyiKRi~l 621 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN-GTVKKTSL 621 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC-CEEEEEEh
Confidence 3455678899999999875442 2111111111221 23334556777766644 346777777 87765543
Q ss_pred CCCCCcCCCCCCCcccceeecccCCCCEEEEE--ecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCc
Q 013084 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (449)
Q Consensus 99 n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (449)
..+-....+ ....+..-.+..++.+. ...++.+++|++|++|.+-...-...+....... .+..-++.
T Consensus 622 ~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~----~i~L~~~E 691 (805)
T PRK05560 622 SEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVR----GIKLREGD 691 (805)
T ss_pred HHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcc----cccCCCCC
Confidence 322110000 00111111234555443 3446789999999999996654433332221110 01112345
Q ss_pred cEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEE--EecCceEEEEeCCCCE
Q 013084 177 SIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRL 251 (449)
Q Consensus 177 ~i~~i~~G~---~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~G~v 251 (449)
+|+.+..-. .+.+++|+.|.+.-.-.+.+-....+. .......+...+..++.+ ..+....++++++|++
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~ 766 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKL 766 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeE
Confidence 666665432 257888888876655322221111000 011111111112234333 2344567888888888
Q ss_pred EEEeCCC
Q 013084 252 YSYGWSK 258 (449)
Q Consensus 252 y~~G~n~ 258 (449)
..+-.++
T Consensus 767 lrf~~~e 773 (805)
T PRK05560 767 IRTRVSE 773 (805)
T ss_pred EEEEHHH
Confidence 7776443
No 62
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=47.96 E-value=2.8e+02 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.5
Q ss_pred CeEEEEecCCcEEEeeC
Q 013084 186 EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~ 202 (449)
.|+++...+++||++|-
T Consensus 131 ~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 131 GHVAVSLHNGKAYITGG 147 (376)
T ss_pred ceEEEEeeCCEEEEECC
Confidence 45655546899999984
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=47.77 E-value=2.6e+02 Score=26.74 Aligned_cols=18 Identities=6% Similarity=-0.069 Sum_probs=12.1
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 013084 345 HTLAVTERQNVFSWGRGT 362 (449)
Q Consensus 345 h~~al~~~g~v~~wG~n~ 362 (449)
++.+...++++|..|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 344455678999998643
No 64
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=47.05 E-value=21 Score=22.31 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.3
Q ss_pred ceEEEECCCCEEEEEcCC
Q 013084 293 HTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 293 h~~~lt~~G~vy~wG~n~ 310 (449)
+.++++.+|.+|+.|.-.
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 578999999999999643
No 65
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=44.90 E-value=4.7e+02 Score=28.95 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=82.1
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CcEEEEEEcCCcEEEEECCCC
Q 013084 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQN 153 (449)
Q Consensus 79 g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~n~~ 153 (449)
..++.+++|+. |++|..-...--..+... ........+....+.+|+.+.+- ....+++|.+|.+--.-.+.+
T Consensus 545 t~d~LllfTs~-Grv~~l~~~~IP~~~r~~-~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~ 622 (800)
T TIGR01063 545 THDYLLFFTNR-GKVYWLKVYQIPEASRTA-KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEF 622 (800)
T ss_pred CCCeEEEEeCC-CcEEEEEhhhCcCCCcCC-CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHh
Confidence 44556777777 999998432221111100 00001111233346677776652 235788899998776643332
Q ss_pred CcccCCCCCCccccee-eecccCccEEEE--EeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 154 GQLGLGTTEDSLVPQK-LQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 154 gqlG~~~~~~~~~p~~-v~~~~~~~i~~i--~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
-.... .... +..-++..++.+ +...++.+++|++|++|.+-...--..+.... ...+..+. .++
T Consensus 623 ~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~~E 689 (800)
T TIGR01063 623 SNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-NED 689 (800)
T ss_pred hhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-CCC
Confidence 11000 0000 100112234443 33445689999999999886655433332221 11111111 245
Q ss_pred eEEEEEec--CceEEEEeCCCCEEEEeC
Q 013084 231 KMVMVACG--WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 231 ~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (449)
+|+.+.+- ..+.+++|++|.+.-.-.
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEEH
Confidence 67666543 335778888887766543
No 66
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=43.26 E-value=3.9e+02 Score=27.47 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=48.7
Q ss_pred CEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCC
Q 013084 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG 99 (449)
Q Consensus 20 ~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n 99 (449)
+=.-|.||..|..+.+-.|..+.=-. -.++..+...|..+..+.+--++--+++|.++.|+..
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~~l~k~~-----------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGGSLVKRQ-----------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred CcEEEEeCCceEEEEEccCCceEEEe-----------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 33456788888777664443331110 0111111234556666665555555556999999853
Q ss_pred CCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEE
Q 013084 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (449)
Q Consensus 100 ~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~ 147 (449)
.+- +. +-+...-|.-+++++..+|++.+
T Consensus 276 ~~~---------------~~-----k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 276 TNR---------------IS-----KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred Cce---------------EE-----eEeeecCCceEEEEEecCccEee
Confidence 210 00 11123445667777778887776
No 67
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=42.10 E-value=3.2e+02 Score=26.13 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=11.9
Q ss_pred CeEEEEecCCcEEEeeCC
Q 013084 186 EHSVAVAEDGELYGWGWG 203 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~n 203 (449)
.|++++ -+++||++|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455554 47899999853
No 68
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=69 Score=35.65 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=33.7
Q ss_pred CcEEEE-EcCCCeEEEEe--CCCCEEEEeCCCCCCCC---CCC---C---CCCCCCeEeeeccCCCCc
Q 013084 334 QKVVQI-SCGWRHTLAVT--ERQNVFSWGRGTNGQLG---HGE---S---SDRNSPKIIEPLSLDGSK 389 (449)
Q Consensus 334 ~~v~~i-~~G~~h~~al~--~~g~v~~wG~n~~gqLG---~g~---~---~~~~~p~~i~~l~~~~~~ 389 (449)
..|..+ .|..+-.++|+ +|+++++|+-|..-+|| .+. . --...|..+..-+++|..
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 345554 36666455555 79999999998855554 211 1 123456666666677654
No 69
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=39.91 E-value=2.7e+02 Score=30.76 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=34.8
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCC-CCCCCc-ccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECC
Q 013084 83 TTAYSESCMQVYSWGWGDFGRLGH-GNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~gqLG~-~~~~~~-~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 151 (449)
-+.+|.| ++|+.|-.|+....-. ++-+.. ..-..++.-.+.-+. .-.|.+++.+.-++|..|-.
T Consensus 95 rcWiT~d-nkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs----~i~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 95 RCWITND-NKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVS----RISHLLFVATEKEVMILGVS 160 (1263)
T ss_pred ceEEEcC-CEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHH----hhhhhhhhhhhheeeEEEEE
Confidence 4788988 9999998775432211 011111 111111111111122 23589999999999998854
No 70
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=37.32 E-value=5.7e+02 Score=27.67 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=61.3
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCC
Q 013084 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR 103 (449)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gq 103 (449)
++.|..|-+++ .||.|-.|..+.- + +| ..+|..++...+.++++|.-+-.|-.|-...
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~as-----n------ki----ss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~--- 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGAS-----N------KI----SSVVSAVAFSEDGSYFVTSGNRHVKLWYLQI--- 195 (1080)
T ss_pred EeeccccceEE----Ehhhhhhcccccc-----c------cc----ceeEEEEEEccCCceeeeeeeeeEEEEEeec---
Confidence 34566676666 3666777664310 0 11 1346677788888888887645666663211
Q ss_pred cCCCCCCCcccceeec-------ccCCCCEEEEEecCc----EEEEEEcCCcEEEEEC
Q 013084 104 LGHGNSSDLFTPLPIK-------ALHSLRVKQIACGDS----HCLAVTVEGEVQSWGR 150 (449)
Q Consensus 104 LG~~~~~~~~~p~~v~-------~l~~~~i~~i~~G~~----h~~~lt~~G~vy~wG~ 150 (449)
+ .....|.|+. .+.......|+||.. .++++|..|.|..|-.
T Consensus 196 -~----~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 196 -Q----SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred -c----ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 1 1222333332 234446888999987 8999999999987743
No 71
>PRK05560 DNA gyrase subunit A; Validated
Probab=34.87 E-value=6.7e+02 Score=27.81 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=103.2
Q ss_pred ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-----cEEEEEEcCCcEEEEECCC
Q 013084 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQ 152 (449)
Q Consensus 78 ~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~ 152 (449)
...+..+++|+. |++|..-...--..+... ........+....+.+|+.+.+-. ...+++|++|.+--.-.+.
T Consensus 546 ~t~d~LllfTs~-Grv~~l~v~~iP~~~~~~-~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNR-GRVYRLKVYEIPEASRTA-RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecC-CeEEEEEhhhCcCCCcCC-CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 344556777777 999998654322211100 001011112333566788776644 4578899999777554332
Q ss_pred CCcccCCCCCCcccceeeecccCccEEEE--EeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 153 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
+-....+ -...+..-++..++.+ +...++.+++|++|++|.+-...--..+.... ..++..+ ..++
T Consensus 624 ~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L-~~~E 691 (805)
T PRK05560 624 FSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKL-REGD 691 (805)
T ss_pred hhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccC-CCCC
Confidence 2111000 0001111123344443 33445689999999999886544333222111 1112122 2245
Q ss_pred eEEEEEecC---ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEE--EeCCCceEEEECCCCEEE
Q 013084 231 KMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYG 305 (449)
Q Consensus 231 ~i~~i~~G~---~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--~~G~~h~~~lt~~G~vy~ 305 (449)
+|+.+.+-. .+.+++|+.|.+.-.-.+.+-....+... ..-.++..- +..+..+ ..+.+..+++|.+|++.-
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG--~~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG--VITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc--EEeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 676665543 25778888887665543222211110000 000011000 1123222 234455778888888877
Q ss_pred EEcCC
Q 013084 306 WGWNK 310 (449)
Q Consensus 306 wG~n~ 310 (449)
+-.++
T Consensus 769 f~~~e 773 (805)
T PRK05560 769 TRVSE 773 (805)
T ss_pred EEHHH
Confidence 66544
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.87 E-value=3.4e+02 Score=27.27 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEE--CCCCEEEEEcCCCCcccC
Q 013084 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVT--SDGKLYGWGWNKFGQVGV 316 (449)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt--~~G~vy~wG~n~~GqLG~ 316 (449)
..+++++-.||-+|.-|. ..+++-.-+......-.+... ...+|+.|+.+.+-.+..+ +|+.|..|
T Consensus 349 ~~ts~~fHpDgLifgtgt-~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lw---------- 416 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGT-PDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLW---------- 416 (506)
T ss_pred eeEEeeEcCCceEEeccC-CCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEE----------
Q ss_pred CCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEE
Q 013084 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSW 358 (449)
Q Consensus 317 g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~w 358 (449)
+..+......+.++....+..+..-..-++......+|+..
T Consensus 417 -DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 417 -DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred -EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
No 73
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=33.97 E-value=1e+02 Score=29.63 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=39.3
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCe--eEEEEcCCCEEEEEe
Q 013084 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH--TTAYSESCMQVYSWG 97 (449)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~--~~~l~~~~g~v~~wG 97 (449)
++....|+||+|--- ..++...++......+..|++.+...+- .++++++ +.||-|-
T Consensus 323 a~gnq~g~v~vwdL~--------~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLD--------NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECC--------CCCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEE
Confidence 345688999999632 2233466777777777888888776554 4555666 9999884
No 74
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=33.54 E-value=1.9e+02 Score=28.67 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.7
Q ss_pred EEEecCCe---eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEE
Q 013084 75 SVTCGADH---TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (449)
Q Consensus 75 ~i~~g~~~---~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG 149 (449)
.+.++.++ .+++..+ |++..|-.+.+ +.++ .....+.+|..-....+|++..|+||.+.
T Consensus 164 ~~~~~~~~~~~vl~i~~~-g~l~~w~~~~W--------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 164 KVKEGDNHRDGVLGIGRD-GKINYWDGNVL--------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EeecCCCcceEEEEEeec-CcEeeecCCee--------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34555554 5555566 78877853322 2222 24557999999999999999999999986
No 75
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=32.04 E-value=5.1e+02 Score=25.55 Aligned_cols=157 Identities=15% Similarity=0.217 Sum_probs=72.8
Q ss_pred cEEEEEecCC-ee-EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-cEEEEEEcCCcEEEE
Q 013084 72 EIVSVTCGAD-HT-TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSW 148 (449)
Q Consensus 72 ~i~~i~~g~~-~~-~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~-~h~~~lt~~G~vy~w 148 (449)
.+..|..|.. |. .+.+.|...+|+.+. .|.+ ..+.......+..|..|. .+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566766554 44 344565235888753 2322 334444455677887766 567999999986655
Q ss_pred ECCCCCcccCCCCCCcccceeeec--c----cCccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccc
Q 013084 149 GRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (449)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~--~----~~~~i~~i~~G~---~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 219 (449)
++...+++-.-+......-+.+.. . ...++..|.... .+.+.|.+.+++|.--.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 544444443322221111111110 0 123555554332 35566777888886632110 11
Q ss_pred eeeeeeecCCCeEEEEEecC-ceEEEEeCCCCEEEEeCCCCCcCC
Q 013084 220 EKVATVDLQREKMVMVACGW-RHTISVSSSGRLYSYGWSKYGQLG 263 (449)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G~-~hs~~l~~~G~vy~~G~n~~gqlG 263 (449)
..+..+..+. -|=.+++.+|+-|.-+.+....++
T Consensus 163 ----------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 163 ----------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp ----------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred ----------cceeeecccccccccccCcccceeeecccccceeE
Confidence 1233333333 356778888887665655444443
No 76
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.32 E-value=1e+02 Score=17.55 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.0
Q ss_pred EEEEEEcCCcEEEEECCC
Q 013084 135 HCLAVTVEGEVQSWGRNQ 152 (449)
Q Consensus 135 h~~~lt~~G~vy~wG~n~ 152 (449)
|.++++.+|+||..-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678888999999876543
No 77
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.38 E-value=1.4e+02 Score=28.76 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=35.5
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc--EEEEEEcCCcEEEEEC
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGR 150 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~--h~~~lt~~G~vy~wG~ 150 (449)
.|+||+|-... .++...++......+..|+|.+...+ ..+++.+||.||.|-.
T Consensus 328 ~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 49999996322 12223445555556778999887764 4566789999999954
No 78
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=28.01 E-value=67 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.2
Q ss_pred CceEEEEcCCeEEEEe
Q 013084 29 SHSVALLSGNIVCSWG 44 (449)
Q Consensus 29 ~~~~~l~~~g~v~~wG 44 (449)
.|+++...++++|++|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 5788888889999998
No 79
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=27.63 E-value=3.4e+02 Score=22.12 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=36.7
Q ss_pred CEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013084 125 RVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (449)
Q Consensus 125 ~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~ 200 (449)
+.+++-|-..+.+.+..||.|-.--.. .....--.+.......|.--..-...-+++++.|+||+-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~----------~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDE----------SSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCC----------CCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 567777776567778888887643211 011111112222222233224445677899999999963
No 80
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=26.78 E-value=5.1e+02 Score=23.92 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=37.2
Q ss_pred ecCceEEEEeCCCCEEEEeCCCCCcCCCCCC-CCceeeeeecccCCCcEE-EEEeCCCceEEEECCCCEEEEEcCC
Q 013084 237 CGWRHTISVSSSGRLYSYGWSKYGQLGHGDF-KDHLVPCQLEALRESFIS-QISGGWRHTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 237 ~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~-~~~~~p~~v~~~~~~~i~-~I~~G~~h~~~lt~~G~vy~wG~n~ 310 (449)
--|+-+..+..||+|+..|-....-.-.-.. .....+..+..+.. .. ......+=.+.|.-+|+||.|+.+.
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh--hhccCccccCceEEEcCCCCEEEEEcCC
Confidence 3467888889999999998544110000000 00011111111111 11 1122344457788899999999764
No 81
>PHA02790 Kelch-like protein; Provisional
Probab=25.90 E-value=2.5e+02 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=9.8
Q ss_pred EEEcCCcEEEEEC
Q 013084 138 AVTVEGEVQSWGR 150 (449)
Q Consensus 138 ~lt~~G~vy~wG~ 150 (449)
+..-+|+||..|.
T Consensus 403 ~~~~~~~IYv~GG 415 (480)
T PHA02790 403 ALVFGRRLFLVGR 415 (480)
T ss_pred EEEECCEEEEECC
Confidence 3456889999984
No 82
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=25.23 E-value=5.9e+02 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.6
Q ss_pred CCceEEEECCCCEEEEEc
Q 013084 291 WRHTMAVTSDGKLYGWGW 308 (449)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~ 308 (449)
..|+++++-+|.+|+||-
T Consensus 233 SGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CcceEEecCCCcEEEEcc
Confidence 468899999999999994
No 83
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=24.25 E-value=3.7e+02 Score=21.48 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred EEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013084 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (449)
Q Consensus 126 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~ 200 (449)
.+++-|-..+.+.+..||.|-.-+... ...... .+.......|.--..-....+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~---------~~~s~~-~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN---------SPYSVF-EIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT---------STTGEE-EEEEEETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC---------cceeEE-EEEeccceEEEEEEecceEEEEECCCCeEccc
Confidence 567888778889999999998765431 111111 11111121222223344667999999999975
No 84
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=23.88 E-value=1.3e+02 Score=22.48 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCCEEEEEec-CcEEEEEEcCCcEEEEECCCCCcc
Q 013084 123 SLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQL 156 (449)
Q Consensus 123 ~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gql 156 (449)
+..=..|+|. ..-.++|++||.+|.-+--+.|.+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4456789999 899999999999999886556554
No 85
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.39 E-value=3.8e+02 Score=26.56 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=43.5
Q ss_pred CEEEEeeCCCc---eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEE
Q 013084 20 PVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (449)
Q Consensus 20 ~i~~i~~G~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~w 96 (449)
.++.+.++..+ .+++..+|++..|-.+. -+.++ .....+.+|..-....+|++.. |+||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~-~~~~~~~DIi~~kGkfYAvD~~-G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALK-QMGYHFSDIIVHKGQTYALDSI-GIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEcc-CCCceeeEEEEECCEEEEEcCC-CeEEEE
Confidence 34445667765 67777899998886432 22332 2345688999888889999887 999988
Q ss_pred e
Q 013084 97 G 97 (449)
Q Consensus 97 G 97 (449)
-
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 6
No 86
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.39 E-value=6.3e+02 Score=24.68 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=75.2
Q ss_pred EEEEeCCCeEEEEecCCc-EEEeeCCCCCCCCCCCCCCc--------ccceeeeeeecCCC-eEEEEEecCceEEEEeCC
Q 013084 179 KMVAAGAEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDR--------LIPEKVATVDLQRE-KMVMVACGWRHTISVSSS 248 (449)
Q Consensus 179 ~~i~~G~~h~~~Lt~~G~-vy~~G~n~~gqlg~~~~~~~--------~~p~~v~~~~~~~~-~i~~i~~G~~hs~~l~~~ 248 (449)
=+|.+|....+++..+|+ +|+.. -.+-....+...+. ..|.. .+.++.. +. .+.-+.+.+.|+.+
T Consensus 31 Gmi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D~~TL~~~~--EI~iP~k~R~--~~~~~~~~~~ls~d 105 (342)
T PF06433_consen 31 GMIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWDTQTLSPTG--EIEIPPKPRA--QVVPYKNMFALSAD 105 (342)
T ss_dssp EEEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEETTTTEEEE--EEEETTS-B----BS--GGGEEE-TT
T ss_pred EEeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEecCcCcccc--eEecCCcchh--eecccccceEEccC
Confidence 357788888888888886 44321 12222222222111 11211 1111121 22 23356778899988
Q ss_pred CC-EEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEE-E---------EeCCCceEEEECCCCEEEEEcCCCCcccCC
Q 013084 249 GR-LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ-I---------SGGWRHTMAVTSDGKLYGWGWNKFGQVGVG 317 (449)
Q Consensus 249 G~-vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~-I---------~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g 317 (449)
|+ +|.+-- .+.. -..|..+...++.. | -.|......+..||.+.....+..|+.-
T Consensus 106 gk~~~V~N~-----------TPa~-SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-- 171 (342)
T PF06433_consen 106 GKFLYVQNF-----------TPAT-SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-- 171 (342)
T ss_dssp SSEEEEEEE-----------SSSE-EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE--
T ss_pred CcEEEEEcc-----------CCCC-eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe--
Confidence 87 666532 1111 11222232222221 2 2455556678888888888777766542
Q ss_pred CCCCccccEEeecCCCCcEE---EEEcCCCeEEEEeCCCCEEEEe
Q 013084 318 DNVDHCSPVQVKFPLDQKVV---QISCGWRHTLAVTERQNVFSWG 359 (449)
Q Consensus 318 ~~~~~~~p~~v~~~~~~~v~---~i~~G~~h~~al~~~g~v~~wG 359 (449)
.....+..+.+..+. ...-...+.++++=+|+||.--
T Consensus 172 -----~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 172 -----QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp -----EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred -----EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence 112233333332222 1234556788889999999754
No 87
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.25 E-value=7.2e+02 Score=24.43 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCC
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~ 107 (449)
..+.++...+|.+++.-.....++-.........| .......++.+.+ |+||+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--------------~~~~~~vy~~~~~-g~l~al----------- 309 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDF--------------AVDGGRIYLVDQN-DRVYAL----------- 309 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCc--------------EEECCEEEEEcCC-CeEEEE-----------
Q ss_pred CCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCe
Q 013084 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (449)
Q Consensus 108 ~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h 187 (449)
+..+-..--....+........+.-....++.+.+|.||+. +...-..--........-...-.....+
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l-----------d~~tG~~~~~~~~~~~~~~s~P~~~~~~ 378 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI-----------NREDGRFVAQQKVDSSGFLSEPVVADDK 378 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCcceeCCEEECCE
Q ss_pred EEEEecCCcEEEe
Q 013084 188 SVAVAEDGELYGW 200 (449)
Q Consensus 188 ~~~Lt~~G~vy~~ 200 (449)
.++.+++|+||++
T Consensus 379 l~v~t~~G~l~~~ 391 (394)
T PRK11138 379 LLIQARDGTVYAI 391 (394)
T ss_pred EEEEeCCceEEEE
No 88
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.39 E-value=7.5e+02 Score=24.29 Aligned_cols=270 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred eeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc-E------
Q 013084 63 TQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-H------ 135 (449)
Q Consensus 63 ~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~-h------ 135 (449)
..|..-..+-+..|..|..--..++.|+..+|++ ...+-++-+|...+...-.-...++ .+.+|..+.. +
T Consensus 30 ~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 30 YTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEECCCCEEEEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCc
Q ss_pred --EEEEEcCCc-EEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC-CeEEEEecCCcEEEeeCCCCCCCCCC
Q 013084 136 --CLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLG 211 (449)
Q Consensus 136 --~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~h~~~Lt~~G~vy~~G~n~~gqlg~~ 211 (449)
.++|+.||+ +|.. +......-..+..-....+..|..+. .+.+.-.++.....|++...-+..+.
T Consensus 107 ~~~~~ls~dgk~l~V~-----------n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFY-----------QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG 175 (352)
T ss_pred cceEEECCCCCEEEEe-----------cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec
Q ss_pred CCCCcccceeeeeeec------CCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEE
Q 013084 212 DRNDRLIPEKVATVDL------QREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS 285 (449)
Q Consensus 212 ~~~~~~~p~~v~~~~~------~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 285 (449)
.... ..-.....+.. ... ........-++++..|+||..-. ......+.....+......
T Consensus 176 ~~g~-~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~----------~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 176 TKGN-PKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDL----------SSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred CCCc-eEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEec----------CCCcceecceeeecccccc
Q ss_pred --EEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCC-eEEEEeCCCCEEEEeCCC
Q 013084 286 --QISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRGT 362 (449)
Q Consensus 286 --~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~-h~~al~~~g~v~~wG~n~ 362 (449)
...-|...-++++.+|+-.---.+..+. -.+...-..-..+.....+.+..|..|.. +.++++.||+.+.+-.|.
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~--~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAK--WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCcc--ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
No 89
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=22.31 E-value=4.3e+02 Score=21.49 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=35.6
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013084 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (449)
Q Consensus 177 ~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (449)
+.+++.|-....+.+..||.|-+-- +.... ...+.........|.--.+-....+++++.|+||.-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~----------~~~~~--~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTR----------DESSS--FTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEeccc----------CCCCc--ceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 4667777665667777888876321 11111 112222121122333333444567899999999983
No 90
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.04 E-value=1.1e+03 Score=25.89 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=58.3
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCC------CC-CC--CcCCeeecC-CCCCcEEEEEecCCee-EEEEcCCCEEEE---
Q 013084 30 HSVALLSGNIVCSWGRGEDGQLGHG------DA-ED--RLSPTQLSA-LDGHEIVSVTCGADHT-TAYSESCMQVYS--- 95 (449)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~------~~-~~--~~~P~~v~~-~~~~~i~~i~~g~~~~-~~l~~~~g~v~~--- 95 (449)
..++...|+.+|+|=.+....+-.. .. .+ ....+.+.. .....|.+|....... ++|.-. ..|.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~-~~v~V~~L 112 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGP-RGVVVLEL 112 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcC-CcEEEEEe
Confidence 4455556799999987765543221 11 01 111122211 1123577777655443 444433 22322
Q ss_pred ---EeCCCCCCcCCCCCCCcccceeec--c---cCCCCEEEEE-----ecCcEEEEEEcCCcEEEEE
Q 013084 96 ---WGWGDFGRLGHGNSSDLFTPLPIK--A---LHSLRVKQIA-----CGDSHCLAVTVEGEVQSWG 149 (449)
Q Consensus 96 ---wG~n~~gqLG~~~~~~~~~p~~v~--~---l~~~~i~~i~-----~G~~h~~~lt~~G~vy~wG 149 (449)
||.+..-+.|.. .......+|. . -....|+++. ..+.|.++||+|+.+-.+-
T Consensus 113 P~r~g~~~~~~~g~~--~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 113 PRRWGKNGEFEDGKK--EINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ccccCccccccCCCc--ceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 665543332322 1111222221 1 1234678875 3479999999999876653
No 91
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=21.73 E-value=7.8e+02 Score=24.24 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=72.3
Q ss_pred CEEEEEecCc-EE-EEEEcCCc-EEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC-CeEEEEecCCcEEEe
Q 013084 125 RVKQIACGDS-HC-LAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-EHSVAVAEDGELYGW 200 (449)
Q Consensus 125 ~i~~i~~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~h~~~Lt~~G~vy~~ 200 (449)
.+..|..|.. |. ++.+.||+ +|..+.. +.+ ..+.......+..|..|. -+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566666543 55 45677786 7776532 222 233334455677776665 457888999985554
Q ss_pred eCCCCCCCCCCCCCCcccceeeeeeec----CCCeEEEEEecCc---eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceee
Q 013084 201 GWGRYGNLGLGDRNDRLIPEKVATVDL----QREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 273 (449)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~----~~~~i~~i~~G~~---hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p 273 (449)
++...+++-.-+......-..++.... ...++..|..... +.+.+.+.+++|..-....
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-------------- 160 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-------------- 160 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--------------
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--------------
Confidence 433333333222211111111111110 1234555544322 4456667788877632110
Q ss_pred eeecccCCCcEEEEEeC-CCceEEEECCCCEEEEEcCCCCccc
Q 013084 274 CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVG 315 (449)
Q Consensus 274 ~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~GqLG 315 (449)
....++.+..| .-|=.+++.+|+.|.-+.+....++
T Consensus 161 ------~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 161 ------KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp ------SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred ------cccceeeecccccccccccCcccceeeecccccceeE
Confidence 11113344443 3466788889887776666544443
No 92
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=21.61 E-value=4.2e+02 Score=24.22 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=13.0
Q ss_pred EEEeeC---CCceEEEEcCCeEEEEeC
Q 013084 22 LLISAG---ASHSVALLSGNIVCSWGR 45 (449)
Q Consensus 22 ~~i~~G---~~~~~~l~~~g~v~~wG~ 45 (449)
++|..| ....+++..+|.||+-..
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGVLYAVTP 99 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred cccccCcccceeEEEecCCccEEEecc
Confidence 566777 445566667777776665
No 93
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=21.49 E-value=8.5e+02 Score=24.57 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=52.9
Q ss_pred cEEEEEEcCCcEEEEECCCC--CcccCCCCCCcccceeeecccCccEEEEEeCC------CeEEEEecCCcEEEeeCCCC
Q 013084 134 SHCLAVTVEGEVQSWGRNQN--GQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA------EHSVAVAEDGELYGWGWGRY 205 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~~--gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~------~h~~~Lt~~G~vy~~G~n~~ 205 (449)
.|-+++-..|.+|.+|--.. .|.-.-...+.. +..+...+..++..+. .|-+++- ..+++.||--..
T Consensus 124 shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W----~fd~~trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd 198 (521)
T KOG1230|consen 124 SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW----LFDLKTRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHD 198 (521)
T ss_pred cceeEEeccCeEEEeccccCCcchhhhhhhhhee----eeeeccchheeeccCCCCCCCccceeEEe-eeeEEEEcceec
Confidence 57777777789999984221 111111111111 1122223455555443 3444443 445666662110
Q ss_pred CCCCCCCCCCcccceeeeeeecCCCeEEEEEec-------CceEEEEeCCCCEEEEeC
Q 013084 206 GNLGLGDRNDRLIPEKVATVDLQREKMVMVACG-------WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 206 gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-------~~hs~~l~~~G~vy~~G~ 256 (449)
...+...-..+-.+.+...+..++.-+ .-|.++++-+|.+|.||-
T Consensus 199 ------~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 199 ------SNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred ------CCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 011122222222233223333333322 357889999999999994
No 94
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.40 E-value=8.3e+02 Score=24.44 Aligned_cols=228 Identities=10% Similarity=-0.046 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCC-CcCC
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG-RLGH 106 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~g-qLG~ 106 (449)
..+.++|.+||.+.+. +-.|.. ..............+.++-.+..+..-.++++.+ +++|.-=....- .+..
T Consensus 91 ~e~LvvV~~dG~v~vy--~~~G~~----~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v~n~~~~~~~~~ 163 (410)
T PF04841_consen 91 DEELVVVQSDGTVRVY--DLFGEF----QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYVVNNIDEPVKLRR 163 (410)
T ss_pred CCeEEEEEcCCEEEEE--eCCCce----eechhhhccccCcccccccccccCCCCEEEECCC-CeEEEEeCccccchhhc
Q ss_pred CCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC
Q 013084 107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE 186 (449)
Q Consensus 107 ~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~ 186 (449)
-...+..............+..+......-+.+..++.++..-.+...+ +.......-..++-...
T Consensus 164 ~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------------i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 164 LPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------------IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------------ccCCCCeEEEEECCCCC
Q ss_pred eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCC
Q 013084 187 HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD 266 (449)
Q Consensus 187 h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~ 266 (449)
|.++++++|++|.. .....-.....-........++.-..+.+++|.-...|+..| ..++
T Consensus 230 ~iAl~t~~g~l~v~-------------ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg-------~~~~ 289 (410)
T PF04841_consen 230 FIALFTDSGNLWVV-------------SSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG-------PDGD 289 (410)
T ss_pred EEEEEECCCCEEEE-------------ECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC-------CCCC
Q ss_pred CCCceeeeeecccCCCcEEEEEeCCCceEE
Q 013084 267 FKDHLVPCQLEALRESFISQISGGWRHTMA 296 (449)
Q Consensus 267 ~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~ 296 (449)
......+..+-......=.+|-....|-++
T Consensus 290 ~~~~~~~~~~~l~~E~DG~riit~~~~~~l 319 (410)
T PF04841_consen 290 SISFWYDGPVILVSEIDGVRIITSTSHEFL 319 (410)
T ss_pred ceEEeccCceEEeccCCceEEEeCCceEEE
No 95
>PLN02772 guanylate kinase
Probab=20.54 E-value=3.6e+02 Score=26.92 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=35.0
Q ss_pred CCeeEEEEcCCCEEEEEe-CCCCCCcCCC------CCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECC
Q 013084 80 ADHTTAYSESCMQVYSWG-WGDFGRLGHG------NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG-~n~~gqLG~~------~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 151 (449)
..|+++...+ ++|+|| .|+.+.+-.. .+.....|...-... .+...|++++-.+.+++..+..
T Consensus 26 ~~~tav~igd--k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 26 NRETSVTIGD--KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CcceeEEECC--EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeCC
Confidence 4466666654 999999 4444323211 011222232211111 1335799999999999999754
No 96
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=20.21 E-value=4.7e+02 Score=21.15 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=33.6
Q ss_pred EEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE-EeCCCeEEEEecCCcEEEe
Q 013084 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAVAEDGELYGW 200 (449)
Q Consensus 128 ~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i-~~G~~h~~~Lt~~G~vy~~ 200 (449)
++-|-..+.+.+..||+|-.-.... +...--.+..... .++.| ..-....+++++.|+||+-
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~~----------~~~s~l~~~s~~~-g~v~i~~v~s~~YLCmn~~G~ly~s 64 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDDS----------SSYTILERIAVAV-GVVSIKGVASCRYLCMNKCGKLYGS 64 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCCC----------CCCceEEEEECCC-CEEEEEEcccceEEEECCCCCEEEC
Confidence 3445556778888899987543211 1111112222222 22223 3345667889999999964
No 97
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=20.12 E-value=1.5e+02 Score=22.09 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.3
Q ss_pred ccEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCC
Q 013084 176 VSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNL 208 (449)
Q Consensus 176 ~~i~~i~~G-~~h~~~Lt~~G~vy~~G~n~~gql 208 (449)
..=..|+|. ....++|++||.+|.-+--..|++
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 345788999 888999999999998885555543
Done!