Query 013084
Match_columns 449
No_of_seqs 460 out of 2188
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 6.5E-84 2.2E-88 645.6 46.4 398 12-411 9-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 5E-74 1.7E-78 571.1 33.8 370 23-397 5-378 (389)
3 3mvd_K Regulator of chromosome 100.0 2.5E-71 8.5E-76 558.2 39.3 374 12-398 17-410 (423)
4 1a12_A RCC1, regulator of chro 100.0 1.6E-70 5.4E-75 550.5 39.2 366 23-397 12-400 (413)
5 3of7_A Regulator of chromosome 100.0 1.1E-69 3.8E-74 552.9 36.5 378 15-398 6-442 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.7E-68 6E-73 531.2 35.9 333 18-353 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 2.1E-65 7.1E-70 511.7 41.1 323 71-398 16-339 (406)
8 1a12_A RCC1, regulator of chro 100.0 6.1E-65 2.1E-69 509.9 38.8 337 12-355 52-412 (413)
9 3mvd_K Regulator of chromosome 100.0 1.3E-63 4.5E-68 502.0 43.5 333 11-354 67-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.4E-62 4.8E-67 500.6 39.0 327 17-351 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 2.7E-53 9.2E-58 402.4 30.5 260 12-356 17-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 7.1E-52 2.4E-56 392.6 28.6 251 38-368 2-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.3 0.13 4.6E-06 50.1 36.3 282 18-362 133-414 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 96.5 0.71 2.4E-05 44.9 39.4 267 21-361 122-390 (445)
15 2zwa_A Leucine carboxyl methyl 96.5 0.66 2.3E-05 48.6 24.3 104 133-256 441-558 (695)
16 2zwa_A Leucine carboxyl methyl 96.2 0.69 2.4E-05 48.5 22.7 105 133-256 491-615 (695)
17 4gbf_A Phikz131; 7-bladed beta 96.2 0.0096 3.3E-07 52.8 6.8 84 176-274 309-395 (400)
18 1p22_A F-BOX/WD-repeat protein 96.1 1.1 3.6E-05 43.5 34.4 229 72-360 135-363 (435)
19 4gbf_A Phikz131; 7-bladed beta 96.0 0.011 3.7E-07 52.4 6.4 85 19-117 309-396 (400)
20 1k3i_A Galactose oxidase precu 95.5 2.8 9.7E-05 43.3 25.0 72 240-313 458-534 (656)
21 1k3i_A Galactose oxidase precu 94.7 4.5 0.00015 41.8 27.2 72 291-364 457-533 (656)
22 3mmy_A MRNA export factor; mRN 94.7 2.6 8.9E-05 38.9 24.7 234 71-361 40-303 (368)
23 2ovr_B FBW7, F-BOX/WD repeat p 94.4 3.9 0.00013 39.5 39.6 230 17-310 158-391 (445)
24 3k26_A Polycomb protein EED; W 94.1 3.6 0.00012 37.9 30.3 305 17-360 17-364 (366)
25 1gxr_A ESG1, transducin-like e 93.3 4.6 0.00016 36.7 34.9 275 26-361 9-295 (337)
26 4aez_A CDC20, WD repeat-contai 92.2 8.1 0.00028 36.6 35.4 265 24-361 99-379 (401)
27 3v7d_B Cell division control p 91.7 9.8 0.00033 36.7 38.3 278 21-361 125-420 (464)
28 1sq9_A Antiviral protein SKI8; 91.2 9.6 0.00033 35.6 22.8 108 124-256 187-320 (397)
29 3odt_A Protein DOA1; ubiquitin 90.4 9.4 0.00032 34.1 34.8 270 16-361 16-295 (313)
30 3zwl_B Eukaryotic translation 89.9 11 0.00039 34.4 32.7 200 18-256 32-247 (369)
31 1sq9_A Antiviral protein SKI8; 89.9 13 0.00043 34.8 33.0 256 16-310 14-322 (397)
32 4aez_A CDC20, WD repeat-contai 89.7 14 0.00047 34.9 29.8 226 73-360 96-334 (401)
33 3no0_A DNA gyrase subunit A; D 89.6 12 0.0004 34.0 20.8 217 122-367 22-251 (276)
34 3no0_A DNA gyrase subunit A; D 89.3 12 0.00042 33.9 22.4 217 17-263 22-251 (276)
35 1q7f_A NHL, brain tumor CG1071 88.7 13 0.00043 33.1 26.2 16 241-256 210-225 (286)
36 4gqb_B Methylosome protein 50; 87.2 19 0.00065 33.5 31.5 230 72-360 84-329 (344)
37 1gxr_A ESG1, transducin-like e 86.6 18 0.0006 32.6 31.0 236 78-361 9-254 (337)
38 3i2n_A WD repeat-containing pr 86.3 19 0.00066 32.7 31.0 238 18-310 18-291 (357)
39 3odt_A Protein DOA1; ubiquitin 86.2 18 0.00061 32.2 31.7 186 71-310 105-296 (313)
40 2uvk_A YJHT; unknown function, 84.9 24 0.00084 32.6 15.4 18 133-151 110-127 (357)
41 3k26_A Polycomb protein EED; W 83.7 26 0.00088 31.9 29.1 259 19-308 70-364 (366)
42 1pgu_A Actin interacting prote 83.4 38 0.0013 33.6 32.5 186 72-309 162-365 (615)
43 3vl1_A 26S proteasome regulato 82.9 31 0.0011 32.3 32.6 267 25-362 65-365 (420)
44 3jrp_A Fusion protein of prote 82.5 29 0.001 31.7 30.2 241 18-310 11-287 (379)
45 3gre_A Serine/threonine-protei 82.1 35 0.0012 32.3 23.3 161 18-202 63-243 (437)
46 3sfz_A APAF-1, apoptotic pepti 81.8 67 0.0023 35.4 26.6 219 83-359 1018-1246(1249)
47 1q7f_A NHL, brain tumor CG1071 81.5 28 0.00095 30.8 23.2 17 293-309 210-226 (286)
48 3ii7_A Kelch-like protein 7; p 81.3 24 0.0008 31.9 13.2 17 291-308 192-208 (306)
49 3mkq_A Coatomer beta'-subunit; 80.9 56 0.0019 33.9 32.4 231 19-310 14-259 (814)
50 4g56_B MGC81050 protein; prote 80.6 36 0.0012 31.5 35.2 187 125-362 141-343 (357)
51 3uc1_A DNA gyrase subunit A; D 80.6 37 0.0013 31.6 21.5 221 130-367 50-284 (327)
52 3v7d_B Cell division control p 80.0 43 0.0015 32.0 34.6 239 73-362 125-381 (464)
53 3uc1_A DNA gyrase subunit A; D 79.3 40 0.0014 31.3 23.9 220 25-263 50-284 (327)
54 3fvz_A Peptidyl-glycine alpha- 79.3 38 0.0013 30.9 21.2 18 134-151 93-110 (329)
55 3ii7_A Kelch-like protein 7; p 77.2 41 0.0014 30.2 17.8 16 185-201 192-207 (306)
56 3p6j_A De novo designed beta-t 76.4 28 0.00097 28.0 11.2 108 123-253 29-138 (142)
57 1zgk_A Kelch-like ECH-associat 76.1 36 0.0012 30.8 12.7 16 185-201 113-128 (308)
58 3jrp_A Fusion protein of prote 74.8 50 0.0017 30.0 30.4 238 72-361 13-286 (379)
59 3jro_A Fusion protein of prote 73.8 89 0.003 32.4 27.0 243 18-310 9-285 (753)
60 4a11_B DNA excision repair pro 73.4 57 0.0019 30.0 36.7 301 17-363 42-366 (408)
61 4asc_A Kelch repeat and BTB do 72.5 38 0.0013 30.6 12.0 18 239-257 140-157 (315)
62 2xn4_A Kelch-like protein 2; s 70.6 30 0.001 31.1 10.7 16 186-202 197-212 (302)
63 3no2_A Uncharacterized protein 70.4 59 0.002 29.0 25.7 166 173-368 85-267 (276)
64 1xip_A Nucleoporin NUP159; bet 68.4 60 0.0021 30.9 12.5 64 126-202 90-153 (388)
65 2vpj_A Kelch-like protein 12; 67.8 21 0.00073 32.1 9.0 17 134-151 105-121 (301)
66 2xyi_A Probable histone-bindin 67.0 87 0.003 29.6 26.8 200 82-309 196-409 (430)
67 3i2n_A WD repeat-containing pr 66.8 72 0.0025 28.6 29.5 196 18-257 65-290 (357)
68 1yfq_A Cell cycle arrest prote 66.8 71 0.0024 28.5 25.5 253 16-309 9-281 (342)
69 1xip_A Nucleoporin NUP159; bet 66.5 82 0.0028 30.0 13.0 108 61-200 80-187 (388)
70 2xyi_A Probable histone-bindin 66.4 89 0.0031 29.5 27.1 260 72-361 130-409 (430)
71 1r5m_A SIR4-interacting protei 65.7 84 0.0029 29.0 30.6 236 72-360 110-359 (425)
72 2aq5_A Coronin-1A; WD40 repeat 64.8 90 0.0031 29.0 30.1 154 24-202 40-205 (402)
73 1suu_A DNA gyrase subunit A; t 64.0 88 0.003 28.6 23.1 260 80-361 8-282 (312)
74 4gga_A P55CDC, cell division c 61.8 1.1E+02 0.0036 28.8 34.1 139 28-202 115-259 (420)
75 2aq5_A Coronin-1A; WD40 repeat 61.7 1E+02 0.0035 28.6 28.8 153 76-256 40-205 (402)
76 4asc_A Kelch repeat and BTB do 60.9 94 0.0032 27.9 14.8 16 240-256 91-106 (315)
77 2ymu_A WD-40 repeat protein; u 57.7 1.4E+02 0.0049 29.0 30.8 219 72-358 346-576 (577)
78 2vpj_A Kelch-like protein 12; 56.8 1.1E+02 0.0036 27.2 14.7 16 134-150 152-167 (301)
79 1r5m_A SIR4-interacting protei 56.4 1.2E+02 0.0042 27.8 32.5 239 18-309 108-360 (425)
80 1zi0_A DNA gyrase subunit A; b 55.0 1.3E+02 0.0043 27.5 25.9 216 24-259 49-278 (307)
81 4g56_B MGC81050 protein; prote 54.9 1.3E+02 0.0044 27.6 30.3 187 72-311 141-344 (357)
82 3vgz_A Uncharacterized protein 54.8 1.2E+02 0.004 27.2 30.1 65 284-360 266-333 (353)
83 3gre_A Serine/threonine-protei 53.7 1.4E+02 0.0049 27.8 21.8 119 18-151 111-244 (437)
84 3no2_A Uncharacterized protein 52.8 1.2E+02 0.0042 26.8 28.5 166 122-316 86-267 (276)
85 1pgu_A Actin interacting prote 51.4 1.8E+02 0.0063 28.4 33.8 190 18-257 160-365 (615)
86 2woz_A Kelch repeat and BTB do 48.8 1.5E+02 0.0051 26.6 15.6 17 239-256 101-117 (318)
87 2woz_A Kelch repeat and BTB do 48.8 1.5E+02 0.0051 26.6 15.5 62 185-256 101-166 (318)
88 4e54_B DNA damage-binding prot 48.5 1.8E+02 0.0061 27.4 23.1 148 18-202 119-280 (435)
89 4a11_B DNA excision repair pro 48.4 1.6E+02 0.0055 26.8 30.3 250 17-311 98-366 (408)
90 1suu_A DNA gyrase subunit A; t 45.8 1.8E+02 0.006 26.5 24.9 262 29-311 9-284 (312)
91 3fvz_A Peptidyl-glycine alpha- 44.0 1.8E+02 0.0062 26.1 18.6 17 240-256 294-310 (329)
92 4aow_A Guanine nucleotide-bind 42.9 1.8E+02 0.006 25.7 34.2 280 18-358 38-333 (340)
93 4ery_A WD repeat-containing pr 41.5 1.8E+02 0.0062 25.5 32.4 268 19-360 24-310 (312)
94 1vyh_C Platelet-activating fac 41.5 2.2E+02 0.0076 26.5 33.6 145 19-202 109-263 (410)
95 2uvk_A YJHT; unknown function, 39.3 66 0.0023 29.5 7.3 17 239-256 110-126 (357)
96 1yfq_A Cell cycle arrest prote 38.9 2E+02 0.007 25.3 29.4 248 72-361 13-281 (342)
97 1wp5_A Topoisomerase IV; broke 38.5 2.4E+02 0.008 25.9 24.1 225 23-264 45-283 (323)
98 3jro_A Fusion protein of prote 38.1 3.5E+02 0.012 27.8 29.0 241 72-362 11-285 (753)
99 1zvt_A Topoisomerase IV subuni 38.0 2.1E+02 0.0072 25.2 15.8 158 83-264 5-169 (256)
100 4gqb_B Methylosome protein 50; 37.5 2.4E+02 0.0081 25.7 30.3 230 19-309 83-330 (344)
101 3zwl_B Eukaryotic translation 37.4 2.2E+02 0.0075 25.3 26.9 198 72-309 34-248 (369)
102 1zi0_A DNA gyrase subunit A; b 37.0 2.4E+02 0.0082 25.6 23.4 216 129-362 49-277 (307)
103 3l6v_A GYRA, DNA gyrase subuni 36.9 2.7E+02 0.0092 26.1 25.2 222 24-264 53-322 (370)
104 3vl1_A 26S proteasome regulato 34.6 2.7E+02 0.0093 25.5 34.7 225 29-310 110-365 (420)
105 3mkq_A Coatomer beta'-subunit; 34.3 3.9E+02 0.013 27.2 33.7 190 19-257 56-258 (814)
106 1k8k_C P40, ARP2/3 complex 41 33.8 2.6E+02 0.0088 25.0 31.1 252 18-310 8-274 (372)
107 2pm9_A Protein WEB1, protein t 33.3 2.8E+02 0.0096 25.2 24.7 244 17-310 66-337 (416)
108 3p6j_A De novo designed beta-t 33.0 1.9E+02 0.0064 23.1 14.8 107 174-305 28-138 (142)
109 3ei3_B DNA damage-binding prot 30.2 3.1E+02 0.011 24.8 30.6 194 17-258 72-282 (383)
110 1wp5_A Topoisomerase IV; broke 30.1 3.2E+02 0.011 24.9 25.1 225 76-315 46-282 (323)
111 4ggc_A P55CDC, cell division c 27.7 3E+02 0.01 23.8 34.5 139 28-202 35-179 (318)
112 3f3f_A Nucleoporin SEH1; struc 27.7 3E+02 0.01 23.8 27.8 272 74-366 17-341 (351)
113 2ymu_A WD-40 repeat protein; u 27.2 4.3E+02 0.015 25.5 30.8 221 72-360 264-496 (577)
114 3sfz_A APAF-1, apoptotic pepti 26.9 6.4E+02 0.022 27.4 31.4 147 19-202 616-772 (1249)
115 2pm9_A Protein WEB1, protein t 26.5 3.6E+02 0.012 24.4 27.1 242 71-363 68-338 (416)
116 3q7x_A De novo designed beta-t 26.0 2.4E+02 0.0081 22.1 11.7 106 126-254 8-114 (132)
117 3mmy_A MRNA export factor; mRN 25.9 3.4E+02 0.012 23.9 30.9 151 16-203 37-198 (368)
118 3iz6_a 40S ribosomal protein R 24.8 4E+02 0.014 24.3 24.6 69 177-258 207-280 (380)
119 3sjl_D Methylamine dehydrogena 24.8 4.4E+02 0.015 24.8 19.9 294 2-362 17-355 (386)
120 1l0q_A Surface layer protein; 24.4 3.9E+02 0.013 24.0 18.2 230 30-306 35-271 (391)
121 2pbi_B Guanine nucleotide-bind 24.2 4E+02 0.014 24.0 35.1 185 125-358 156-353 (354)
122 3e5z_A Putative gluconolactona 23.1 3.7E+02 0.013 23.3 12.5 15 293-307 221-235 (296)
123 3l6v_A GYRA, DNA gyrase subuni 22.9 4.7E+02 0.016 24.4 26.6 126 76-209 53-185 (370)
124 1bfg_A Basic fibroblast growth 22.0 2.5E+02 0.0085 22.5 6.7 70 14-95 13-84 (146)
125 4e54_B DNA damage-binding prot 22.0 4.8E+02 0.016 24.2 17.4 71 124-203 251-326 (435)
126 3hrp_A Uncharacterized protein 20.8 5.2E+02 0.018 24.1 23.3 215 30-311 134-401 (409)
127 1zvu_A Topoisomerase IV subuni 20.8 7.1E+02 0.024 25.7 12.0 128 127-264 508-639 (716)
128 1zvt_A Topoisomerase IV subuni 20.4 4.3E+02 0.015 23.1 16.8 156 31-209 5-168 (256)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=6.5e-84 Score=645.55 Aligned_cols=398 Identities=83% Similarity=1.410 Sum_probs=369.1
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCC
Q 013084 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (449)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g 91 (449)
++..+++.+|++|+||..|+++|+++|+||+||+|.+||||+++.+++..|+++..+.+.+|++|+||..|+++|+++.+
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 55677788999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeee
Q 013084 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (449)
Q Consensus 92 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (449)
+||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCE
Q 013084 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (449)
Q Consensus 172 ~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~v 251 (449)
.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+|
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCE
Confidence 9999999999999999999999999999999999999999988888898886544 67899999999999999999999
Q ss_pred EEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecC
Q 013084 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (449)
Q Consensus 252 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~ 331 (449)
|+||.|.+||||+++..+...|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|+++.++
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeecCccCCCCCccccCCCc
Q 013084 332 LDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 411 (449)
Q Consensus 332 ~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (449)
...+|++|+||.+|++||+++|+||+||+|.+||||+|++.++..|..|+.|..++....+++++......++.|++|+|
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5e-74 Score=571.06 Aligned_cols=370 Identities=30% Similarity=0.585 Sum_probs=330.3
Q ss_pred EEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCC
Q 013084 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (449)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~g 102 (449)
++..-..+.++|++||+||+||+|.+||||.++.++...|+++..+.+.+|++|+||..|+++|+++ |+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 4455667889999999999999999999999888888899999888878899999999999999999 999999999999
Q ss_pred CcCCCCCCCcccceeecccCCCCE--EEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEE
Q 013084 103 RLGHGNSSDLFTPLPIKALHSLRV--KQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (449)
Q Consensus 103 qLG~~~~~~~~~p~~v~~l~~~~i--~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (449)
|||.++......|.++..+....+ ++|+||..|+++|+++|+||+||.|.+||||.++......|.++..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 999999988899999998877644 788899999999999999999999999999999998889999999999889999
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceEEEEeCCCCEEEEeCCC
Q 013084 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSK 258 (449)
Q Consensus 181 i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~~~G~vy~~G~n~ 258 (449)
|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||. +|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999988888888886554 67899999995 8999999999999999999
Q ss_pred CCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEE
Q 013084 259 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ 338 (449)
Q Consensus 259 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 338 (449)
+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|+++..+...+|++
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 99999999888999999999998899999999999999999999999999999999999999889999999888889999
Q ss_pred EEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeecCc
Q 013084 339 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSK 397 (449)
Q Consensus 339 i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~~~~~~~~~~ 397 (449)
|+||.+|++||+++|+||+||+|.+||||+|+..++..|..|+.+ .+....++++..
T Consensus 322 ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~--~~~~v~~va~G~ 378 (389)
T 3kci_A 322 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL--QGKKVNRVACGS 378 (389)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCCCEEEEET
T ss_pred EEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEeccc--CCCCEEEEEecC
Confidence 999999999999999999999999999999999999999998766 455566666654
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-71 Score=558.22 Aligned_cols=374 Identities=27% Similarity=0.408 Sum_probs=316.8
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCC-CCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCC
Q 013084 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (449)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~-~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~ 90 (449)
.++.++..++++|++|..|+++|+++|+||+||+|.+||||.++. .....|.+++.+. .|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 445778889999999999999999999999999999999999875 4567888888876 589999999999999999
Q ss_pred CEEEEEeCCCCCCcCCCCCCC--cccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEEC--CCCCcccCCCCCCccc
Q 013084 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (449)
Q Consensus 91 g~v~~wG~n~~gqLG~~~~~~--~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~ 166 (449)
|+||+||.|.+||||.+.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999988754 566777764 3489999999999999999999999998 9999999988776655
Q ss_pred ceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC-----------CcccceeeeeeecCCCeEEEE
Q 013084 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDLQREKMVMV 235 (449)
Q Consensus 167 p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~-----------~~~~p~~v~~~~~~~~~i~~i 235 (449)
|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++.... ..+|++|
T Consensus 172 p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~--~~~v~~i 247 (423)
T 3mvd_K 172 PIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR--AKPFEAI 247 (423)
T ss_dssp EEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT--CCCEEEE
T ss_pred eeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC--CccEEEE
Confidence 5544 567789999999999999999999999999999999987642 345677765433 5689999
Q ss_pred EecCceEEEE-eCCCCEEEEeCCCCCcCCCCCCCC--ceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCC
Q 013084 236 ACGWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 312 (449)
Q Consensus 236 ~~G~~hs~~l-~~~G~vy~~G~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~G 312 (449)
+||.+|++++ +++|+||+||.|.+||||.+.... ...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~G 324 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYG 324 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGG
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCC
Confidence 9999999999 599999999999999999965433 34555554 34599999999999999999999999999999
Q ss_pred cccCCCCCC-ccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceE
Q 013084 313 QVGVGDNVD-HCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQ 391 (449)
Q Consensus 313 qLG~g~~~~-~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~~~~ 391 (449)
|||.++..+ ...|.+++.+.. +|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|.+|..+.+.+....
T Consensus 325 qLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~ 403 (423)
T 3mvd_K 325 RLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 403 (423)
T ss_dssp TTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEE
T ss_pred CCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEE
Confidence 999998766 457888877655 899999999999999999999999999999999999999999999987667787888
Q ss_pred EeecCcc
Q 013084 392 NIASSKY 398 (449)
Q Consensus 392 ~~~~~~~ 398 (449)
++++...
T Consensus 404 ~va~G~~ 410 (423)
T 3mvd_K 404 LASGGGQ 410 (423)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 8887653
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-70 Score=550.45 Aligned_cols=366 Identities=32% Similarity=0.507 Sum_probs=317.5
Q ss_pred EEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-CcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC
Q 013084 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (449)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~ 101 (449)
+.+.+..|+++|+++|+||+||.|.+||||+++... +..|+++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 566778999999999999999999999999998654 6788888765 4799999999999999999 99999999999
Q ss_pred CCcCCCCCC--CcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEEC--CCCCcccCCCCCCc-ccceeeecccCc
Q 013084 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (449)
Q Consensus 102 gqLG~~~~~--~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~ 176 (449)
||||.+... ....|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 4567777743 3489999999999999999999999998 99999998876543 357776 4566
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-----------cccceeeeeeec---CCCeEEEEEecCceE
Q 013084 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATVDL---QREKMVMVACGWRHT 242 (449)
Q Consensus 177 ~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~-----------~~~p~~v~~~~~---~~~~i~~i~~G~~hs 242 (449)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999865321 245654433211 246899999999999
Q ss_pred EEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCC--CcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCC-CC
Q 013084 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 319 (449)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g-~~ 319 (449)
++|+++|+||+||.|.+||||.++......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888899999998877 679999999999999999999999999999999998 45
Q ss_pred CCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeecCc
Q 013084 320 VDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSK 397 (449)
Q Consensus 320 ~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~~~~~~~~~~ 397 (449)
.....|++|+.+ .+|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|.+|+...+.+....++++..
T Consensus 325 ~~~~~P~~v~~l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~ 400 (413)
T 1a12_A 325 EEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400 (413)
T ss_dssp CCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECS
T ss_pred ccccCCEEeccc--CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCC
Confidence 666788888765 3899999999999999999999999999999999999988889999876555666677777654
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-69 Score=552.86 Aligned_cols=378 Identities=25% Similarity=0.414 Sum_probs=322.2
Q ss_pred CCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCC---CCcCCeeecCC--CCCcEEEEEecCCeeEEEEcC
Q 013084 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE---DRLSPTQLSAL--DGHEIVSVTCGADHTTAYSES 89 (449)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~---~~~~P~~v~~~--~~~~i~~i~~g~~~~~~l~~~ 89 (449)
..|...|....+...|+++++++|+||+||.|.+||||.++.. +...|++++.+ ...+|++|+||..|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~ 85 (473)
T 3of7_A 6 HHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE 85 (473)
T ss_dssp ---CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT
T ss_pred chhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC
Confidence 4567788889999999999999999999999999999999853 45678888776 456899999999999999999
Q ss_pred CCEEEEEeCCCCCCcCCCCCCC-----------------------cccceeecc--c----CCCCEEEEEecCcEEEEEE
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVT 140 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~-----------------------~~~p~~v~~--l----~~~~i~~i~~G~~h~~~lt 140 (449)
|+||+||.|.+||||.+.... ...|.++.. + .+.+|++|+||..|+++|+
T Consensus 86 -G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 86 -SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp -CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred -CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 999999999999999987654 456777775 4 3679999999999999999
Q ss_pred cCCcEEEEEC--CCCCcccCCCC--CCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-
Q 013084 141 VEGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND- 215 (449)
Q Consensus 141 ~~G~vy~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~- 215 (449)
++|+||+||. +..||||.... .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 165 ~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 244 (473)
T 3of7_A 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244 (473)
T ss_dssp TTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG
T ss_pred CCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc
Confidence 9999999998 67899998543 356688889888888999999999999999999999999999999999876543
Q ss_pred ---cccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCC----CceeeeeecccCCCcEEEEE
Q 013084 216 ---RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQIS 288 (449)
Q Consensus 216 ---~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~I~ 288 (449)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+
T Consensus 245 ~~~~~~p~~~~-----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 245 RLKTLDPRPFG-----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp TTTTCSCEECS-----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE
T ss_pred cccccCceecC-----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEE
Confidence 34555542 2589999999999999999999999999999999998754 34679999988888899999
Q ss_pred eCCCceEEEECCCCEEEEEcCCCCcccCCCCC------------CccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEE
Q 013084 289 GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV------------DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVF 356 (449)
Q Consensus 289 ~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~------------~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~ 356 (449)
||.+|+++|+++|+||+||.|.+||||.+... ....+.+..++...+|++|+||.+|++||+++|+||
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy 399 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAY 399 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEE
T ss_pred eCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEE
Confidence 99999999999999999999999999986531 112223333333348999999999999999999999
Q ss_pred EEeCCCCCCCCCCC-CCCCCCCeEeeeccCCCCceEEeecCcc
Q 013084 357 SWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIASSKY 398 (449)
Q Consensus 357 ~wG~n~~gqLG~g~-~~~~~~p~~i~~l~~~~~~~~~~~~~~~ 398 (449)
+||.|.+||||+|. ..+...|.+|+.+...+.....+++...
T Consensus 400 ~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~ 442 (473)
T 3of7_A 400 SWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442 (473)
T ss_dssp EEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSS
T ss_pred EeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCC
Confidence 99999999999999 7889999999877777777777777653
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-68 Score=531.16 Aligned_cols=333 Identities=31% Similarity=0.563 Sum_probs=313.7
Q ss_pred CCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCc--EEEEEecCCeeEEEEcCCCEEEE
Q 013084 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHE--IVSVTCGADHTTAYSESCMQVYS 95 (449)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~--i~~i~~g~~~~~~l~~~~g~v~~ 95 (449)
..+|++|+||..|+++|+++|+||+||.|.+||||.++.+....|.+++.+.+.. +++|+||..|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 3589999999999999999999999999999999999988889999999887654 47889999999999999 99999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccC
Q 013084 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (449)
Q Consensus 96 wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 175 (449)
||.|.+||||.++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEE
Q 013084 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (449)
Q Consensus 176 ~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~ 253 (449)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+||+
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999995 89999999999999999999999999888888888886554 6689999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCC
Q 013084 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD 333 (449)
Q Consensus 254 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 333 (449)
||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|++++.+..
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~ 368 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCC
Confidence 99999999999999899999999999988999999999999999999999999999999999999999999999988888
Q ss_pred CcEEEEEcCCCeEEEEeCCC
Q 013084 334 QKVVQISCGWRHTLAVTERQ 353 (449)
Q Consensus 334 ~~v~~i~~G~~h~~al~~~g 353 (449)
.+|++|+||.+|++||++++
T Consensus 369 ~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 369 KKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp SCCCEEEEETTEEEEECC--
T ss_pred CCEEEEEecCCcEEEEecCC
Confidence 89999999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.1e-65 Score=511.70 Aligned_cols=323 Identities=37% Similarity=0.730 Sum_probs=302.0
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCC-cEEEEE
Q 013084 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (449)
Q Consensus 71 ~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G-~vy~wG 149 (449)
.+|++|+||..|+++|+++ |+||+||.|.+||||+++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4799999999999999999 99999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCC
Q 013084 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (449)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (449)
.|.+||||.+.......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. .
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~ 172 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE--G 172 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--T
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC--C
Confidence 99999999999988889999999988899999999999999999999999999999999999988888888886554 6
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcC
Q 013084 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 230 ~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (449)
.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|.++..+...+|++|+||.+|+++|+++|+||+||.|
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 78999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCc
Q 013084 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSK 389 (449)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~i~~l~~~~~~ 389 (449)
.+||||.++..+...|.+++.+...+|++|+||.+|++||+++|+||+||+|.+||||+++..+...|..++.+. ...
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~ 330 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQK 330 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCC
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCc
Confidence 999999999999999999998878889999999999999999999999999999999999998888898887543 345
Q ss_pred eEEeecCcc
Q 013084 390 GQNIASSKY 398 (449)
Q Consensus 390 ~~~~~~~~~ 398 (449)
..++++...
T Consensus 331 v~~va~G~~ 339 (406)
T 4d9s_A 331 VVQVSCGWR 339 (406)
T ss_dssp EEEEEECSS
T ss_pred EEEEEeCCC
Confidence 667766543
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=6.1e-65 Score=509.88 Aligned_cols=337 Identities=26% Similarity=0.478 Sum_probs=294.0
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCC--CCcCCeeecCCCCCcEEEEEecCCeeEEEEcC
Q 013084 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSES 89 (449)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~--~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~ 89 (449)
|...+...+|++|+||..|+++|+++|+||+||.|.+||||.+..+ ....|.++.. . .+|++|+||..|+++|+++
T Consensus 52 P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~ 129 (413)
T 1a12_A 52 PALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDD 129 (413)
T ss_dssp EEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETT
T ss_pred ceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCC
Confidence 3444456899999999999999999999999999999999998763 4667888843 3 3799999999999999999
Q ss_pred CCEEEEEeC--CCCCCcCCCCCCCc-ccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCC---
Q 013084 90 CMQVYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED--- 163 (449)
Q Consensus 90 ~g~v~~wG~--n~~gqLG~~~~~~~-~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~--- 163 (449)
|+||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 130 -G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 206 (413)
T 1a12_A 130 -GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANR 206 (413)
T ss_dssp -SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSS
T ss_pred -CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccc
Confidence 99999999 99999998876443 346666 4567899999999999999999999999999999999875421
Q ss_pred --------cccceeeecc-----cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 164 --------SLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 164 --------~~~p~~v~~~-----~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
...|+.+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.....
T Consensus 207 ~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~ 286 (413)
T 1a12_A 207 GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286 (413)
T ss_dssp CGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred cccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCc
Confidence 2456555543 346899999999999999999999999999999999998888888888876552235
Q ss_pred eEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCC-CCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcC
Q 013084 231 KMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 231 ~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~-~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (449)
+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|.++..+. +|++|+||.+|+++|+++|+||+||.|
T Consensus 287 ~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 287 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCC
Confidence 79999999999999999999999999999999998 566778899998877 599999999999999999999999999
Q ss_pred CCCcccCCCCCCccccEEeecC--CCCcEEEEEcCCCeEEEEeCCCCE
Q 013084 310 KFGQVGVGDNVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTERQNV 355 (449)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~h~~al~~~g~v 355 (449)
.+||||.++..+...|+++..+ ...+|++|+||.+|+++|+++|++
T Consensus 365 ~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 365 TNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999999888899999753 456899999999999999998863
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-63 Score=501.99 Aligned_cols=333 Identities=26% Similarity=0.404 Sum_probs=293.3
Q ss_pred cccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC--CcCCeeecCCCCCcEEEEEecCCeeEEEEc
Q 013084 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (449)
Q Consensus 11 ~~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~ 88 (449)
.|...+...+|++|+||..|+++|+++|+||+||.|.+||||.+..++ ...|.++.... +|++|+||..|+++|++
T Consensus 67 ~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~ 144 (423)
T 3mvd_K 67 RLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLE 144 (423)
T ss_dssp EEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEET
T ss_pred CCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeC
Confidence 455666778899999999999999999999999999999999988764 67788887443 79999999999999999
Q ss_pred CCCEEEEEeC--CCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCC----
Q 013084 89 SCMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE---- 162 (449)
Q Consensus 89 ~~g~v~~wG~--n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~---- 162 (449)
+ |+||+||. |.+||||.+...... .|++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 145 ~-G~v~~wG~~~n~~GqlG~~~~~~~~--~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 221 (423)
T 3mvd_K 145 D-GRVFAWGSFRDSHGNMGLTIDGNKR--TPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 221 (423)
T ss_dssp T-SCEEEEECEECSSSEEESBTTBCEE--EEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTS
T ss_pred C-CeEEEEeCCCCCCCCcCcCCCCCCc--eeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccc
Confidence 9 99999999 999999998776654 44555667799999999999999999999999999999999997653
Q ss_pred -------CcccceeeecccCccEEEEEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCcc--cceeeeeeecCCCeE
Q 013084 163 -------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRL--IPEKVATVDLQREKM 232 (449)
Q Consensus 163 -------~~~~p~~v~~~~~~~i~~i~~G~~h~~~L-t~~G~vy~~G~n~~gqlg~~~~~~~~--~p~~v~~~~~~~~~i 232 (449)
....|.++..+...+|++|+||..|++++ +++|+||+||.|.+||||.+...... .|.++. ..+|
T Consensus 222 ~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v 296 (423)
T 3mvd_K 222 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDI 296 (423)
T ss_dssp CSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSE
T ss_pred ccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCe
Confidence 44578888877788999999999999999 69999999999999999996554433 344332 3589
Q ss_pred EEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCC-ceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCC
Q 013084 233 VMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 233 ~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 311 (449)
++|+||.+|+++|+++|+||+||.|.+||||.++..+ ...|.+++.+.. +|++|+||.+|+++|+++|+||+||.|.+
T Consensus 297 ~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 297 RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp EEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTT
T ss_pred EEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCC
Confidence 9999999999999999999999999999999998766 468888888876 79999999999999999999999999999
Q ss_pred CcccCCCCCCccccEEeec--CCCCcEEEEEcCCCeEEEEeCCCC
Q 013084 312 GQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTERQN 354 (449)
Q Consensus 312 GqLG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~h~~al~~~g~ 354 (449)
||||.++..+...|++|.. +...+|++|+||.+|+++|+++++
T Consensus 376 GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 376 NQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 9999999999999999985 445789999999999999998764
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-62 Score=500.55 Aligned_cols=327 Identities=26% Similarity=0.489 Sum_probs=281.8
Q ss_pred CCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-----------------------CcCCeeecC--C---
Q 013084 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--L--- 68 (449)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-----------------------~~~P~~v~~--~--- 68 (449)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+++. +
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 456999999999999999999999999999999999987654 467888875 5
Q ss_pred -CCCcEEEEEecCCeeEEEEcCCCEEEEEeC--CCCCCcCCCCC--CCcccceeecccCCCCEEEEEecCcEEEEEEcCC
Q 013084 69 -DGHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (449)
Q Consensus 69 -~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~--n~~gqLG~~~~--~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G 143 (449)
.+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 357899999999999999999 99999998 68899998554 3566888888888889999999999999999999
Q ss_pred cEEEEECCCCCcccCCCCCC----cccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----
Q 013084 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND---- 215 (449)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~---- 215 (449)
+||+||.|.++|||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999986543 345665532 5799999999999999999999999999999999987642
Q ss_pred cccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCC--------------CCceeeeeecccCC
Q 013084 216 RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRE 281 (449)
Q Consensus 216 ~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~--------------~~~~~p~~v~~~~~ 281 (449)
...|.++..+. +.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.
T Consensus 301 ~~~P~~v~~~~--~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~- 377 (473)
T 3of7_A 301 VTKPKRLALPD--NVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP- 377 (473)
T ss_dssp EEEEEECCCCT--TCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-
T ss_pred eeccccccccC--CccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC-
Confidence 35577666443 578999999999999999999999999999999998642 1234566666544
Q ss_pred CcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCC-CCCccccEEeecC--CCCcEEEEEcCCCeEEEEeC
Q 013084 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTE 351 (449)
Q Consensus 282 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~-~~~~~~p~~v~~~--~~~~v~~i~~G~~h~~al~~ 351 (449)
+|++|+||.+|++||+++|+||+||.|.+||||.++ ..+...|++|+.+ ...+|++|+||..|++++..
T Consensus 378 -~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 378 -KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp -CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred -ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 599999999999999999999999999999999998 7778889999843 34679999999999999975
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.7e-53 Score=402.36 Aligned_cols=260 Identities=26% Similarity=0.420 Sum_probs=219.4
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCC
Q 013084 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (449)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g 91 (449)
+.+.+...+|++|+||..|+++|+ ||+||+||.|.+||||. |... ..+|++|+||..|+++|+ + |
T Consensus 17 ~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~~----~~~i~~ia~G~~hs~~l~-~-G 81 (282)
T 3qhy_B 17 TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAAT----QSGVDAIAAGNYHSLALK-D-G 81 (282)
T ss_dssp CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGGG----GSCCCEEEECSSEEEEEE-T-T
T ss_pred cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------CccC----CCCEEEEEeCCCEEEEEE-C-C
Confidence 445556679999999999999998 99999999999999995 2211 236999999999999995 7 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeee
Q 013084 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (449)
Q Consensus 92 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (449)
+||+||.|.+||||. |.++. .+|++|+||..|+++|+ +|+||+||.|.++|||...
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----------- 137 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----------- 137 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG-----------
T ss_pred EEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc-----------
Confidence 999999999999994 33332 37999999999999999 9999999999999997421
Q ss_pred cccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCE
Q 013084 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (449)
Q Consensus 172 ~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~v 251 (449)
....+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+|
T Consensus 138 -~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v 200 (282)
T 3qhy_B 138 -EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKV 200 (282)
T ss_dssp -GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEE
T ss_pred -cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeE
Confidence 12246999999999999999 89999999999999983 3222 35899999999999999 89999
Q ss_pred EEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecC
Q 013084 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (449)
Q Consensus 252 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~ 331 (449)
|+||.|.+||||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 201 ~~wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------------- 253 (282)
T 3qhy_B 201 IAWGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------------- 253 (282)
T ss_dssp EEEECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------------
T ss_pred EEEECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------------
Confidence 999999999998542 122 24999999999999999 999999999999998741
Q ss_pred CCCcEEEEEcCCCeEEEEeCCCCEE
Q 013084 332 LDQKVVQISCGWRHTLAVTERQNVF 356 (449)
Q Consensus 332 ~~~~v~~i~~G~~h~~al~~~g~v~ 356 (449)
..|++|+||..|++||+++++.+
T Consensus 254 --~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 --SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp --SCEEEEEECSSCEEEEEC-----
T ss_pred --CCcEEEEECcCeEEEEecCCCCC
Confidence 37999999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.1e-52 Score=392.58 Aligned_cols=251 Identities=27% Similarity=0.471 Sum_probs=211.0
Q ss_pred CeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCccccee
Q 013084 38 NIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLP 117 (449)
Q Consensus 38 g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~ 117 (449)
.+||+||+|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||. |.+
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~--------p~~ 60 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTM--------PAA 60 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSC--------CGG
T ss_pred eEEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCC--------Ccc
Confidence 369999998755443 22223333 6999999999999998 8 9999999999999994 221
Q ss_pred ecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcE
Q 013084 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (449)
Q Consensus 118 v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~v 197 (449)
. ..+|++|+||..|+++|+ ||+||+||.|.++|||. |.++. .+|++|+||.+|+++|+ +|+|
T Consensus 61 --~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --T--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --G--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEE
T ss_pred --C--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeE
Confidence 1 237999999999999996 99999999999999985 33332 37999999999999999 9999
Q ss_pred EEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeec
Q 013084 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (449)
Q Consensus 198 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~ 277 (449)
|+||.|.+|||+.. .+ ...+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++
T Consensus 123 ~~wG~n~~gqlg~~--------~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~- 178 (282)
T 3qhy_B 123 IAWGDDSDGQTTVP--------AE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA- 178 (282)
T ss_dssp EEEECCTTSTTSCC--------GG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG-
T ss_pred EEecCCCCCcCCCC--------cc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec-
Confidence 99999999999842 11 1347999999999999999 89999999999999983 2222
Q ss_pred ccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEE
Q 013084 278 ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFS 357 (449)
Q Consensus 278 ~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~ 357 (449)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. ...+|++|+||.+|+++|+ +|+||+
T Consensus 179 ---~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~-~g~v~~ 241 (282)
T 3qhy_B 179 ---QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK-NGKVIA 241 (282)
T ss_dssp ---GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE-TTEEEE
T ss_pred ---CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE-CCEEEE
Confidence 24599999999999999 899999999999999986431 1247999999999999999 999999
Q ss_pred EeCCCCCCCCC
Q 013084 358 WGRGTNGQLGH 368 (449)
Q Consensus 358 wG~n~~gqLG~ 368 (449)
||.|.++|++.
T Consensus 242 wG~n~~gq~~v 252 (282)
T 3qhy_B 242 WGSSRTAPSSV 252 (282)
T ss_dssp ESTTCCCCGGG
T ss_pred ecCCCCccccC
Confidence 99999999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.34 E-value=0.13 Score=50.12 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=161.3
Q ss_pred CCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEe
Q 013084 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (449)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG 97 (449)
...|..++......+.-..||.|.+|-.... + ....+.. ....|..++......+.-..| |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E----------CKRILTG-HTGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcC-CCCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 4567788887777777789999999954321 0 1111111 123577888766666666667 9999996
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCcc
Q 013084 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (449)
Q Consensus 98 ~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (449)
...... ...+. .....|..++......+.-+.||.|..|-...... ........-....
T Consensus 200 ~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAA 258 (435)
T ss_dssp SSSCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSC
T ss_pred CCCCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCc
Confidence 433211 01111 12346888888888888889999999996533211 0111111112335
Q ss_pred EEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCC
Q 013084 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS 257 (449)
Q Consensus 178 i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n 257 (449)
|..++......+.-..||.|..|-... ...+..+......|..++......+.-..+|.|+.|-..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTST--------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCc--------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 777777777777778899999996422 112222232344677777777777777889999999653
Q ss_pred CCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEE
Q 013084 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVV 337 (449)
Q Consensus 258 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~ 337 (449)
.... ...+. .....|..++....+.+.-..+|.|..|-......... .....+..........|.
T Consensus 325 ~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 325 CGAC-----------LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCC
T ss_pred CCCE-----------EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc---cccchheeeccCCCCCeE
Confidence 2111 11111 12234777777666666677899999996532111000 000001221112234566
Q ss_pred EEEcCCCeEEEEeCCCCEEEEeCCC
Q 013084 338 QISCGWRHTLAVTERQNVFSWGRGT 362 (449)
Q Consensus 338 ~i~~G~~h~~al~~~g~v~~wG~n~ 362 (449)
.++......+.-..||.|..|--..
T Consensus 390 ~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 390 RLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCEEEEEeCCCEEEEEECCC
Confidence 6666555555556789999996543
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.48 E-value=0.71 Score=44.93 Aligned_cols=267 Identities=11% Similarity=0.056 Sum_probs=156.5
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCC
Q 013084 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (449)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~ 100 (449)
+..++.-+...+.-..||.|.+|-......+ ..+.. ....|..+.......+.-..| |.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~-h~~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVG-HTGGVWSSQMRDNIIISGSTD-RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECCC-CSSCEEEEEEETTEEEEEETT-SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEcC-CCCCEEEEEecCCEEEEEeCC-CeEEEEECCc
Confidence 3445555555556668888888864322110 11111 123567777766666666777 9999995432
Q ss_pred CCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEE
Q 013084 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (449)
Q Consensus 101 ~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (449)
.. ....+. .....|..++......+.-+.||.|+.|-...... ...+. .....|..
T Consensus 189 ~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~ 244 (445)
T 2ovr_B 189 GE-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRC 244 (445)
T ss_dssp TE-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEE
T ss_pred Cc-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEE
Confidence 10 011111 12336788888788888889999999996543111 01111 12335777
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCC
Q 013084 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 260 (449)
Q Consensus 181 i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~g 260 (449)
++......+.-..+|.|+.|-... ...+..+......|..++....+.+.-..+|.|+.|-.....
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 777667777778899999995321 122333332345677777766777777889999999653311
Q ss_pred cCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecC--CCCcEEE
Q 013084 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP--LDQKVVQ 338 (449)
Q Consensus 261 qlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~ 338 (449)
. ...+. .....+..++......+.-..+|.|..|-....-. ...+..+ ....|..
T Consensus 311 ~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 311 C-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTC 367 (445)
T ss_dssp E-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEE
T ss_pred E-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCCCCEEE
Confidence 1 11111 11233666666666666677899999996543111 1112211 2346777
Q ss_pred EEcCCCeEEEEeCCCCEEEEeCC
Q 013084 339 ISCGWRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 339 i~~G~~h~~al~~~g~v~~wG~n 361 (449)
++......+.-..||.|..|-..
T Consensus 368 ~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 368 LQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEECSSEEEEEETTSEEEEEETT
T ss_pred EEECCCEEEEEeCCCeEEEEECC
Confidence 77776677777789999999643
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.46 E-value=0.66 Score=48.62 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred CcEEEEEEc-CCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE----EeCCCeEEEEecCCcEEEeeCCCCCC
Q 013084 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV----AAGAEHSVAVAEDGELYGWGWGRYGN 207 (449)
Q Consensus 133 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i----~~G~~h~~~Lt~~G~vy~~G~n~~gq 207 (449)
..|++++.. +|+||.+|-.....--..+ . .+-.+.......+ ..-..|++++..+|+||++|-...
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~d-v------~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~-- 511 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSD-N------WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE-- 511 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCC-C------EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS--
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcccc-E------EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC--
Confidence 368887776 8999999843221100000 0 0000111112222 123567777756999999983211
Q ss_pred CCCCCCCCcccceeeeeeecCCCeEEEEEe-------cCceE-EEEeCC-CCEEEEeC
Q 013084 208 LGLGDRNDRLIPEKVATVDLQREKMVMVAC-------GWRHT-ISVSSS-GRLYSYGW 256 (449)
Q Consensus 208 lg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-------G~~hs-~~l~~~-G~vy~~G~ 256 (449)
. . .+...+........+.. -..|+ +++..+ +++|.+|-
T Consensus 512 --~---~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 512 --G---P------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp --S---C------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred --C---C------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 1 1 23333333344444442 23566 555655 89999994
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.22 E-value=0.69 Score=48.49 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEe-------CCCeE-EEEecC-CcEEEeeCC
Q 013084 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA-------GAEHS-VAVAED-GELYGWGWG 203 (449)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~-------G~~h~-~~Lt~~-G~vy~~G~n 203 (449)
..|++++-.+|+||.+|-..... -..+-.+.......+.. -..|+ +++..+ +++|++|-.
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~-----------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGP-----------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSC-----------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred ccceEEEEcCCEEEEECCCCCCC-----------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 46777775689999998533211 00111112223333332 24566 444555 899999832
Q ss_pred CCCCCCCCCCCCcccceeeeeeecCCCe------EEEEE-----ecCceEEEEeCCCCEEEEeC
Q 013084 204 RYGNLGLGDRNDRLIPEKVATVDLQREK------MVMVA-----CGWRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~~~~~------i~~i~-----~G~~hs~~l~~~G~vy~~G~ 256 (449)
... + . .....+..++..... ...+. .-..|++++..++++|.+|-
T Consensus 560 ~~~--~--~----~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 560 FMD--Q--T----TVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CTT--S--S----CBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred CCC--C--C----eeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 111 0 0 001112222211222 33332 23567888777799999985
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.20 E-value=0.0096 Score=52.81 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=65.4
Q ss_pred ccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEe
Q 013084 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYG 255 (449)
Q Consensus 176 ~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G 255 (449)
..|..|+....|.+++--+++++.||+++.||+-.... .-+..++.+|.++++-+..-..+-.||
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t---------------agPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH---------------AGPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG---------------GCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC---------------cchHHhHhccCCeEEEEeceeeEEEec
Confidence 46888999999999999999999999999999875322 136788999999999999999999999
Q ss_pred CCCCCcC---CCCCCCCceeee
Q 013084 256 WSKYGQL---GHGDFKDHLVPC 274 (449)
Q Consensus 256 ~n~~gql---G~~~~~~~~~p~ 274 (449)
+....-| |.+....+..|+
T Consensus 374 DSPDNSLLwnGr~t~~~~~~~~ 395 (400)
T 4gbf_A 374 DSPDNSLLWNGRGTRVKHIEPT 395 (400)
T ss_dssp CCTTSTTCCTTCCSBCCCCCCC
T ss_pred CCCCcceeecCccceeeeccCC
Confidence 8665544 444433444444
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.14 E-value=1.1 Score=43.54 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=138.0
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECC
Q 013084 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 72 ~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 151 (449)
.|..++....+.+.-..+ |.|..|-..... ....+. .....|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTLE-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCCe-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777766777777777 999999543211 011111 1234688888866777777889999999654
Q ss_pred CCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCe
Q 013084 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (449)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~ 231 (449)
.... ...+. .....|..++......+.-..+|.|+.|-..... .......+......
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRAA 258 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSSC
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCCc
Confidence 3211 01111 1234678888777777788899999999643211 01111112222346
Q ss_pred EEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCC
Q 013084 232 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 232 i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 311 (449)
|..++....+.+.-..+|.|..|-...... ...+. .....|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 777777777777778899999996432111 11111 112336677766666677788999999975431
Q ss_pred CcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeC
Q 013084 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGR 360 (449)
Q Consensus 312 GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~ 360 (449)
.+...-......|..++......+.-..||.|..|-.
T Consensus 327 ------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 ------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred ------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1111111223467777776666666778999999953
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.03 E-value=0.011 Score=52.45 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=63.5
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeC
Q 013084 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~ 98 (449)
..|.+|+.-..|.+++--|++++.+|++++||+-..... -+..++.+|.+|++-+..- ..+-.||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~-nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTL-NQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETT-CCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEece-eeEEEecC
Confidence 456778888899999999999999999999998543322 2478899999999999998 99999997
Q ss_pred CCCCCc---CCCCCCCccccee
Q 013084 99 GDFGRL---GHGNSSDLFTPLP 117 (449)
Q Consensus 99 n~~gqL---G~~~~~~~~~p~~ 117 (449)
....-| |.+......+|+|
T Consensus 375 SPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 375 SPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp CTTSTTCCTTCCSBCCCCCCCC
T ss_pred CCCcceeecCccceeeeccCCC
Confidence 644433 4444444444443
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.47 E-value=2.8 Score=43.32 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=37.1
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEE----eCCCceE-EEECCCCEEEEEcCCCCc
Q 013084 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS----GGWRHTM-AVTSDGKLYGWGWNKFGQ 313 (449)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~----~G~~h~~-~lt~~G~vy~wG~n~~Gq 313 (449)
.|++++..+|+||.+|-...++. .........+... .+...+.+.+. .-..|++ ++..+|+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~y-dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIY-VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEE-EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEE-cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 57778788999999996443321 1110101111110 11111122211 1245764 456899999999876653
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.74 E-value=4.5 Score=41.77 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEE----cCCCeEE-EEeCCCCEEEEeCCCCC
Q 013084 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS----CGWRHTL-AVTERQNVFSWGRGTNG 364 (449)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~----~G~~h~~-al~~~g~v~~wG~n~~g 364 (449)
..|++++..+|+||+.|-...++. .........+..... ...+...+. .-.+|++ ++..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVP-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEG-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcC-CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777777999999985443321 111111112222211 112222222 1245765 45689999999987665
No 22
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.72 E-value=2.6 Score=38.90 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=120.4
Q ss_pred CcEEEEEecCC----eeEEE-EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCC
Q 013084 71 HEIVSVTCGAD----HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEG 143 (449)
Q Consensus 71 ~~i~~i~~g~~----~~~~l-~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G 143 (449)
..|..++...+ ..++. ..+ |.|..|-....++ .....+.. ....|..++... .+.+..+.||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 56888887765 33333 445 9999996543221 01111211 233677776643 4566677899
Q ss_pred cEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEe--CCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccc
Q 013084 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (449)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~--h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 219 (449)
.|..|-..... ...+.. ....|..++. ..+ ..+.-..||.|+.|-....
T Consensus 109 ~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------------- 161 (368)
T 3mmy_A 109 TAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-------------- 161 (368)
T ss_dssp EEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--------------
T ss_pred cEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--------------
Confidence 99999654321 111111 2335777764 333 3444567899999953221
Q ss_pred eeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccC--CCcEEEEEeCCCc----
Q 013084 220 EKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRH---- 293 (449)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~h---- 293 (449)
..+..+.. ...+..+..-....++.+.++.++.|-...... ....+.... ...+..+......
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 162 NPMMVLQL-PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp SCSEEEEC-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred cEEEEEec-CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCe
Confidence 01111111 225556666666777888889998886533211 111111111 1123333333333
Q ss_pred eEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCC-----------CCcEEEEEcCCC--eEEEEeCCCCEEEEeC
Q 013084 294 TMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-----------DQKVVQISCGWR--HTLAVTERQNVFSWGR 360 (449)
Q Consensus 294 ~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-----------~~~v~~i~~G~~--h~~al~~~g~v~~wG~ 360 (449)
.+.-..+|.|..|-....... .....+.... ...|..++.... ..+.-..||.|+.|=.
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EEEecCCCcEEEEecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 566678999999976542110 0001111100 014666655433 4445558899999965
Q ss_pred C
Q 013084 361 G 361 (449)
Q Consensus 361 n 361 (449)
.
T Consensus 303 ~ 303 (368)
T 3mmy_A 303 D 303 (368)
T ss_dssp T
T ss_pred C
Confidence 4
No 23
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.38 E-value=3.9 Score=39.48 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=138.0
Q ss_pred CCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEE
Q 013084 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (449)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~w 96 (449)
....|..++......+.-..||.|.+|-..... ....+.. ....|..+.......+....+ |.|+.|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc-----------EEEEECC-CCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 345677777766666666788999999543210 1111111 123577777777777777777 999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecc--c
Q 013084 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E 174 (449)
Q Consensus 97 G~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~ 174 (449)
-..... +..........|..++......+.-+.||.|+.|-.... ..+..+ .
T Consensus 225 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~ 278 (445)
T 2ovr_B 225 DIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGH 278 (445)
T ss_dssp ESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCC
T ss_pred ECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCC
Confidence 643211 111111123367777777777777888999999954321 111111 2
Q ss_pred CccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013084 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (449)
Q Consensus 175 ~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (449)
...|..++....+.+.-..+|.|+.|-.... ..+..+......+..++......+.-..+|.|+.|
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 2357777777777777788999999964321 11222222234566666666777777889999999
Q ss_pred eCCCCCcCCCCCCCCceeeeeecc--cCCCcEEEEEeCCCceEEEECCCCEEEEEcCC
Q 013084 255 GWSKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 255 G~n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~ 310 (449)
-..... ....+.. .....|..++....+.+.-..+|.|..|-...
T Consensus 345 d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 345 DIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp ETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred ECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 643211 1111111 12234777777777777778899999997543
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.07 E-value=3.6 Score=37.92 Aligned_cols=305 Identities=12% Similarity=0.061 Sum_probs=143.6
Q ss_pred CCCCEEEEeeC------CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCC-CCCcEEEEEecCC------ee
Q 013084 17 PFRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGAD------HT 83 (449)
Q Consensus 17 ~~~~i~~i~~G------~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~-~~~~i~~i~~g~~------~~ 83 (449)
-...|..|+.- ....++-..++.|.+|-......+ ......... ....|..++.... +.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 35577888775 445666678889999965432111 000011111 1234666655433 34
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CcEEEEEEcCCcEEEEECCCCCcccCCC
Q 013084 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (449)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (449)
+.-..+ |.|..|-..... ....+. .....|..++.. ....+.-..||.|+.|-.....
T Consensus 89 ~~~~~d-g~i~v~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------ 149 (366)
T 3k26_A 89 AVAGSR-GIIRIINPITMQ-----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------ 149 (366)
T ss_dssp EEEETT-CEEEEECTTTCC-----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------
T ss_pred EEecCC-CEEEEEEchhce-----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------
Confidence 444566 999999543211 011111 123467777764 3556666789999999653311
Q ss_pred CCCcccceeee--cccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCC-------CCCC--CCcccc-----eee
Q 013084 161 TEDSLVPQKLQ--AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLG-------LGDR--NDRLIP-----EKV 222 (449)
Q Consensus 161 ~~~~~~p~~v~--~~~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg-------~~~~--~~~~~p-----~~v 222 (449)
....+. ......|..++... ...+.-..+|.|+.|-......+. .... .....+ ...
T Consensus 150 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 150 -----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 011111 11233577776543 345555678999999644311000 0000 000000 001
Q ss_pred eeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeeccc--CCCcEEEEE--eC--CCceEE
Q 013084 223 ATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQIS--GG--WRHTMA 296 (449)
Q Consensus 223 ~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~I~--~G--~~h~~~ 296 (449)
.........|..++......+.-..+|.|+.|-.....+.-............+..+ ....|..++ .. ....+.
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 111112234555554456666677889999987543322111000000001111111 111122222 22 344445
Q ss_pred EECCCCEEEEEcCCCCcccCCCCCCccccEEeecCC-CCcEEEEEcCC--CeEEEEeCCCCEEEEeC
Q 013084 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGW--RHTLAVTERQNVFSWGR 360 (449)
Q Consensus 297 lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i~~G~--~h~~al~~~g~v~~wG~ 360 (449)
-..+|.|+.|-......+. .....+.... ...|..++... ...+.-..||.|+.|--
T Consensus 305 ~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHK-------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSCEEEEECCSSSGGG-------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EecCCcEEEEECCCCCCcc-------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 5678999999765421110 0111222111 35677666543 34445568899998853
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.30 E-value=4.6 Score=36.65 Aligned_cols=275 Identities=9% Similarity=0.022 Sum_probs=135.9
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCe-eEEEEcCCCEEEEEeCCCCCCc
Q 013084 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH-TTAYSESCMQVYSWGWGDFGRL 104 (449)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~-~~~l~~~~g~v~~wG~n~~gqL 104 (449)
.+.-..+++..||++++.+......+...... ...+..... -...|..++...+. .++...+ |.|..|-.......
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLN-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEEC-CSSCCCEEEECSSSSEEEEECB-SEEEEEETTSTTCC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceecc-CCCceEEEEEecCCcEEEEcCC-CeEEEEECCCCCce
Confidence 34556788999999998887554433221111 111111111 12346666654433 3333345 99999965432211
Q ss_pred CCCCCCCcccceeecc-cCCCCEEEEEecC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE
Q 013084 105 GHGNSSDLFTPLPIKA-LHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (449)
Q Consensus 105 G~~~~~~~~~p~~v~~-l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (449)
. ....+.. .....|..++... ...+....+|.|+.|-..... .............|..+
T Consensus 86 ~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 86 S--------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYAL 147 (337)
T ss_dssp S--------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEEE
T ss_pred e--------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEEE
Confidence 0 0011110 1233576666553 345556778999999653311 00111111122346666
Q ss_pred EeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEec--CceEEEEeCCCCEEEEeCC
Q 013084 182 AAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWS 257 (449)
Q Consensus 182 ~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n 257 (449)
+.. ....+.-..+|.|+.|-... ...+..+......|..++.. ....+....+|.|+.|-..
T Consensus 148 ~~~~~~~~l~~~~~dg~v~~~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 148 AISPDSKVCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCC--------------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 554 33455566789999996422 11122222223456666553 3345555678889988643
Q ss_pred CCCcCCCCCCCCceeeeeecccCCCcEEEEEeC--CCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCc
Q 013084 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQK 335 (449)
Q Consensus 258 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 335 (449)
.... ...+. ....+..++.. ....++-..+|.|+.|-..... ...+. .....
T Consensus 214 ~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~-~~~~~ 267 (337)
T 1gxr_A 214 EGRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLH-LHESC 267 (337)
T ss_dssp TTEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEEC-CCSSC
T ss_pred CCce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEc-CCccc
Confidence 2111 11111 12235555543 3344445667888888654311 11111 22345
Q ss_pred EEEEEcC--CCeEEEEeCCCCEEEEeCC
Q 013084 336 VVQISCG--WRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 336 v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (449)
|..++.. ....++...+|.|+.|-..
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 6666554 3344455678889999643
No 26
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.17 E-value=8.1 Score=36.62 Aligned_cols=265 Identities=11% Similarity=0.052 Sum_probs=135.2
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCEEEEEeCCCC
Q 013084 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (449)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~--~~~~~l~~~~g~v~~wG~n~~ 101 (449)
++....+.++...||.|+.|-....- ....+.......|..++... .+.++-..+ |.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 55556777888899999999754311 11112221234566666543 344444556 99999964322
Q ss_pred CCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE
Q 013084 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (449)
Q Consensus 102 gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (449)
.. ...+. .....|..++......+.-..+|.|+.|-...... ....+.. ....|..+
T Consensus 167 ~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 TK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp CE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred eE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 11 11111 22346888888777788888999999996542211 0111111 22356666
Q ss_pred EeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceEEEEe---CCCCEEEE
Q 013084 182 AAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVS---SSGRLYSY 254 (449)
Q Consensus 182 ~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~---~~G~vy~~ 254 (449)
+... ...+.-..||.|+.|-... ...+..+......|..++... .+.++.. .+|.|+.|
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARS--------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTC--------------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCC--------------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 6543 3445556789999996432 111111111123444444432 2333332 47888888
Q ss_pred eCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEE----CCCCEEEEEcCCCCcccCCCCCCccccE-Eee
Q 013084 255 GWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVT----SDGKLYGWGWNKFGQVGVGDNVDHCSPV-QVK 329 (449)
Q Consensus 255 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt----~~G~vy~wG~n~~GqLG~g~~~~~~~p~-~v~ 329 (449)
-..... ....+. ....|..++...+...++. ++|.|+.|-..... ..+. .+.
T Consensus 290 d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~ 346 (401)
T 4aez_A 290 NAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIP 346 (401)
T ss_dssp ETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----------EEEEEEEE
T ss_pred ECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----------ceeEEEec
Confidence 643211 011111 1233666665443333332 58889888654310 0111 111
Q ss_pred cCCCCcEEEEEcC--CCeEEEEeCCCCEEEEeCC
Q 013084 330 FPLDQKVVQISCG--WRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 330 ~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (449)
.....|..++.. ..+.+....||.|..|--.
T Consensus 347 -~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 347 -AHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp -CCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred -CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 112345554443 3334444578888888543
No 27
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.75 E-value=9.8 Score=36.68 Aligned_cols=278 Identities=10% Similarity=0.116 Sum_probs=145.1
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC-eeEEEEcCCCEEEEEeCC
Q 013084 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSESCMQVYSWGWG 99 (449)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~-~~~~l~~~~g~v~~wG~n 99 (449)
+..++......+.-..||.|.+|-..... ....+.. -...|..++...+ ..+.-..| |.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-----------~~~~~~~-h~~~V~~l~~~~~~~l~s~s~d-g~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKK-----------FLLQLSG-HDGGVWALKYAHGGILVSGSTD-RTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECSTTEEEEEETT-SCEEEEETT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCc-----------EEEEEeC-CCcCEEEEEEcCCCEEEEEeCC-CCEEEEECC
Confidence 45556555666666788999999643210 0111111 1235777776544 44444555 999999543
Q ss_pred CCCCcCCCCCCCcccceeecccCCCCEEEEEec----CcEEEEEEcCCcEEEEECCCCCcccCCCCCC---------ccc
Q 013084 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------SLV 166 (449)
Q Consensus 100 ~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---------~~~ 166 (449)
... ....+.. ....|..++.. ..+.+.-+.||.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 211 1111111 12356655543 2556667789999999765432221100000 000
Q ss_pred ceeeecc--cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceE
Q 013084 167 PQKLQAF--EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHT 242 (449)
Q Consensus 167 p~~v~~~--~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs 242 (449)
+..+..+ ....|..++......+.-..+|.|+.|-... ...+..+......|..++... ...
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ--------------MKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 1011111 1235677777777777788899999996421 112222222234566655543 355
Q ss_pred EEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcccCCCCCCc
Q 013084 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (449)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 322 (449)
+.-..+|.|+.|-... ++ ....+. .....|..++....+.+.-..||.|..|-.....+
T Consensus 326 ~sg~~dg~i~vwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~--------- 384 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN-GE----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR--------- 384 (464)
T ss_dssp EEEETTSCEEEEETTT-TE----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE---------
T ss_pred EEEeCCCcEEEEECCC-Cc----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce---------
Confidence 5566788898886432 11 111111 12234777777777777778999999997654211
Q ss_pred cccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCC
Q 013084 323 CSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 323 ~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n 361 (449)
...........+..+..... .++...+|.|+.|=..
T Consensus 385 --~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 385 --KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLR 420 (464)
T ss_dssp --EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETT
T ss_pred --eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECC
Confidence 11222222234445555443 3444458888888643
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.23 E-value=9.6 Score=35.62 Aligned_cols=108 Identities=10% Similarity=0.018 Sum_probs=56.0
Q ss_pred CCEEEEEecCc-EEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecc--c---CccEEEEEeC--CCeEEEEecC-
Q 013084 124 LRVKQIACGDS-HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E---GVSIKMVAAG--AEHSVAVAED- 194 (449)
Q Consensus 124 ~~i~~i~~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~---~~~i~~i~~G--~~h~~~Lt~~- 194 (449)
..|..++...+ ..+.-..+|.|+.|-..... ....+... . ...|..++.. ..+.++-..+
T Consensus 187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 187 QFATSVDISERGLIATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred CCceEEEECCCceEEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 35666655433 44455678999999653310 11111110 1 3356666653 3444555567
Q ss_pred --CcEEEeeCCCCCCCCCCCCCCcccceeeeeeec-------------CCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013084 195 --GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-------------QREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 195 --G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~-------------~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (449)
|.|+.|-.... ..+..+.. ....|..++.. ....+.-..+|.|+.|-.
T Consensus 256 ~~g~i~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 256 SFGCITLYETEFG--------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TEEEEEEEETTTC--------------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCC--------------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 88999964321 11111111 23456666554 334455567888888864
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.39 E-value=9.4 Score=34.08 Aligned_cols=270 Identities=14% Similarity=0.053 Sum_probs=138.6
Q ss_pred CCCCCEEEEeeC-CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCE
Q 013084 16 APFRPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQ 92 (449)
Q Consensus 16 ~~~~~i~~i~~G-~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g--~~~~~~l~~~~g~ 92 (449)
.-...|..++.- ....+.-..||.|.+|-.... .....+... ...|..++.. ..+.+.-..+ |.
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~ 82 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TM 82 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-Ce
Confidence 335567777652 223444558899999964221 111112111 2245555443 3344444555 88
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeec
Q 013084 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (449)
Q Consensus 93 v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (449)
|..|=...... ..+..........|..++......+....+|.|+.|-.. + ....+.
T Consensus 83 i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~---~----------~~~~~~- 139 (313)
T 3odt_A 83 INGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG---S----------LVYNLQ- 139 (313)
T ss_dssp EEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT---E----------EEEEEE-
T ss_pred EEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC---c----------EEEecc-
Confidence 88775433210 011111111234678888877788888899999999510 0 011111
Q ss_pred ccCccEEEEEe---CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeec-CCCeEEEEEecCc-eEEEEeC
Q 013084 173 FEGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-QREKMVMVACGWR-HTISVSS 247 (449)
Q Consensus 173 ~~~~~i~~i~~---G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~-~~~~i~~i~~G~~-hs~~l~~ 247 (449)
.....|..+.. .....+.-..+|.|+.|-.. ..+..+.. ....+..++.... ..++-..
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 12234544443 45666777889999999411 11111111 2334554444322 2555667
Q ss_pred CCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC-ceEEEECCCCEEEEEcCCCCcccCCCCCCccccE
Q 013084 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPV 326 (449)
Q Consensus 248 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~ 326 (449)
+|.|+.|-...... ...+. .....|..++...+ ..++-..+|.|+.|-.... .+.
T Consensus 204 dg~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~ 259 (313)
T 3odt_A 204 DGLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLK 259 (313)
T ss_dssp TSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEE
T ss_pred CCeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------cee
Confidence 88899986532111 11111 12234666665533 4555678899999954331 111
Q ss_pred EeecCCCCcEEEEEcCCC-eEEEEeCCCCEEEEeCC
Q 013084 327 QVKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRG 361 (449)
Q Consensus 327 ~v~~~~~~~v~~i~~G~~-h~~al~~~g~v~~wG~n 361 (449)
.........|..++...+ ..++-..||.|+.|=..
T Consensus 260 ~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 260 QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 211122346766665433 35556689999999653
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=89.94 E-value=11 Score=34.37 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=92.9
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEE
Q 013084 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (449)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g--~~~~~~l~~~~g~v 93 (449)
...|..++..... .+.-..||.|++|-.... .....+... ...|..++.. ..+.+....+ |.|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-g~i 98 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDGH-TGTIWSIDVDCFTKYCVTGSAD-YSI 98 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECCC-SSCEEEEEECTTSSEEEEEETT-TEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCC-CeE
Confidence 4456666654332 233346778888843221 111112211 2356666654 3344555566 999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcC-----CcEEEEECCCCCcccCCCCCCccc
Q 013084 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSLV 166 (449)
Q Consensus 94 ~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~ 166 (449)
+.|-...... ...+. ....|..++... .+.++...+ |.|+.|-.........-.......
T Consensus 99 ~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9996432211 01111 233566665443 444555556 888888644322111000000000
Q ss_pred ceeeecc-cCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ce
Q 013084 167 PQKLQAF-EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RH 241 (449)
Q Consensus 167 p~~v~~~-~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~h 241 (449)
...+... ....+..++.. ....++-..+|.|+.|-.... ...+..+......|..++... ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 0111111 11145555443 334555567899999863221 112222222234566665533 33
Q ss_pred EEEEeCCCCEEEEeC
Q 013084 242 TISVSSSGRLYSYGW 256 (449)
Q Consensus 242 s~~l~~~G~vy~~G~ 256 (449)
.++...+|.|+.|-.
T Consensus 233 l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 233 FITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCceEEEEEC
Confidence 444557888888854
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.91 E-value=13 Score=34.78 Aligned_cols=256 Identities=14% Similarity=0.037 Sum_probs=123.0
Q ss_pred CCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC---------eeEEE
Q 013084 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD---------HTTAY 86 (449)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~---------~~~~l 86 (449)
.-...|..|+......+.-..||.|++|-...... .........+.. ....|..++.... +.+..
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEE
Confidence 34567888888776666666899999997543210 000111222222 1234666665433 33444
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccC----CCCEEEEEec------CcE-EEEEEcCCcEEEEECCCCCc
Q 013084 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQNGQ 155 (449)
Q Consensus 87 ~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~----~~~i~~i~~G------~~h-~~~lt~~G~vy~wG~n~~gq 155 (449)
..+ |.|+.|-...... ........+.... ...|..++.. ..+ .+..+.+|.|+.|-......
T Consensus 88 ~~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 88 SFS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ETT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 456 9999995432111 0000012222221 2467777655 344 55567899999996543000
Q ss_pred ccCCCCCCcccce-eee------cccCccEEEEEeCCC-eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeec
Q 013084 156 LGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (449)
Q Consensus 156 lG~~~~~~~~~p~-~v~------~~~~~~i~~i~~G~~-h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 227 (449)
-..+.. ....|. .+. ......|..++...+ ..+.-..+|.|+.|-... ...+..+..
T Consensus 161 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~ 225 (397)
T 1sq9_A 161 ESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST--------------LRPLYNFES 225 (397)
T ss_dssp HHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT--------------TEEEEEEEC
T ss_pred ccccce-eeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCC--------------CceeEEEec
Confidence 000000 001111 111 112334556655443 444445788899986422 112222221
Q ss_pred ---C---CCeEEEEEec--CceEEEEeCC---CCEEEEeCCCCCcCCCCCCCCceeeeeeccc------------CCCcE
Q 013084 228 ---Q---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL------------RESFI 284 (449)
Q Consensus 228 ---~---~~~i~~i~~G--~~hs~~l~~~---G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~------------~~~~i 284 (449)
. ...|..++.. ..+.++-..+ |.|+.|-...... ...+... ....|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCBSBSSCE
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCcccccccccccccCCcE
Confidence 1 3356665543 2344444566 7888886432111 1111110 23346
Q ss_pred EEEEeC--CCceEEEECCCCEEEEEcCC
Q 013084 285 SQISGG--WRHTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 285 ~~I~~G--~~h~~~lt~~G~vy~wG~n~ 310 (449)
..++.. ....+.-..+|.|+.|-...
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 666654 33444456788999996543
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.68 E-value=14 Score=34.94 Aligned_cols=226 Identities=9% Similarity=0.032 Sum_probs=118.2
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEEEEC
Q 013084 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGR 150 (449)
Q Consensus 73 i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~ 150 (449)
+..+.......++...+ +.|+.|-..... ....+.......|..++... .+.++-+.+|.|+.|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d-~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALE-RNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEET-TEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECC-CeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33355556677777888 999999653321 11111211234577776543 45666678999999965
Q ss_pred CCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
..... ...+. .....|..++......+.-..+|.|+.|-....+ ..+..+.....
T Consensus 164 ~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~ 218 (401)
T 4aez_A 164 ESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-------------HQIGTLQGHSS 218 (401)
T ss_dssp TTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCSS
T ss_pred cCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-------------ceeeEEcCCCC
Confidence 43211 11111 1233677777766777777889999999643211 11112222234
Q ss_pred eEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC--CceEEEE---CCCCE
Q 013084 231 KMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVT---SDGKL 303 (449)
Q Consensus 231 ~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~~~lt---~~G~v 303 (449)
.|..++.. ..+.+.-..+|.|+.|-..... +..........|..++... .+.++.. .+|.|
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 56666553 3344555678899998653211 1111111122355555443 3334433 48889
Q ss_pred EEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeE--EEEe--CCCCEEEEeC
Q 013084 304 YGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHT--LAVT--ERQNVFSWGR 360 (449)
Q Consensus 304 y~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~--~al~--~~g~v~~wG~ 360 (449)
+.|-....-. ...+. ....|..++...... ++.. .+|.|+.|-.
T Consensus 287 ~i~d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 287 HFWNAATGAR-----------VNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEEECCCCCE-----------EEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 9996543111 11111 234566665543322 2222 5788888853
No 33
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.61 E-value=12 Score=34.03 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=117.3
Q ss_pred CCCCEEEEEe--cCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeC---CCeEEEEecCCc
Q 013084 122 HSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGE 196 (449)
Q Consensus 122 ~~~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~Lt~~G~ 196 (449)
.+..+..+.. ..++.+++|++|++|..-........ .. .+ .-++++|+.+.+- ....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~------~~---~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS------KV---SL-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE------EC---CC-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc------cc---cc-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 3445665543 34668999999999976432211000 00 03 2356788888662 356888999999
Q ss_pred EEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe--cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeee
Q 013084 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (449)
Q Consensus 197 vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~ 274 (449)
+.-.-..++-+- . .......+. .+..++.+.. +..+.+++|++|++|.+-..+.-.+|....-. +
T Consensus 92 iKr~~l~~~~~~----~----~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv---~- 158 (276)
T 3no0_A 92 VKKIPLAEFEYK----A----QGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV---Q- 158 (276)
T ss_dssp EEEEEGGGTTTC----S----TTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---E-
T ss_pred EEEEEHHHhhhh----c----CCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE---E-
Confidence 887764444210 0 011111111 1334544433 45568899999999998765544444322111 1
Q ss_pred eecccCCCcEEEEEeC--CCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEE--EcCCCeEEEEe
Q 013084 275 QLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQI--SCGWRHTLAVT 350 (449)
Q Consensus 275 ~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i--~~G~~h~~al~ 350 (449)
.+..-.+.+|+.+... ....+++|++|.+.-.=..++-..+.+..- +..- ..+..++.+ ..+....++++
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~~i-~~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TEVS-GTKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EECC-CSSSCEEEEEEESSEEEEEEEE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eEEE-cCCCcEEEEEEeCCCCEEEEEc
Confidence 1222234556665443 345778889998887765554333222110 0000 222344433 23556788899
Q ss_pred CCCCEEE--EeCCCCCCCC
Q 013084 351 ERQNVFS--WGRGTNGQLG 367 (449)
Q Consensus 351 ~~g~v~~--wG~n~~gqLG 367 (449)
++|.+.- +--++--.+|
T Consensus 233 ~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 233 KNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TTSCEEEEEEEGGGSCBCC
T ss_pred CCCeEEEeeeCHHHCCCcC
Confidence 9999988 7555444444
No 34
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.33 E-value=12 Score=33.89 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=119.6
Q ss_pred CCCCEEEEeeCC--CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec---CCeeEEEEcCCC
Q 013084 17 PFRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (449)
Q Consensus 17 ~~~~i~~i~~G~--~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g---~~~~~~l~~~~g 91 (449)
....+..+.... .+.+++|++|++|.---.+ |- .. .+.. + .-++.+|+.+.+- ..+.+++|++ |
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp--~~-~~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---AL--QG-SKVS---L-KSREEKIVGAFIREKFGNRLLLATKK-G 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HH--TS-EECC---C-SSTTCCEEEEEEGGGSCSEEEEEETT-S
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---Cc--cC-cccc---c-CCCCCEEEEEECCcCCCCEEEEEeCC-C
Confidence 445566655444 4578999999999543211 10 00 0000 3 3345678887662 3567888888 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCcEEEEEEcCCcEEEEECCCCCcccCCCCCCccccee
Q 013084 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (449)
Q Consensus 92 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (449)
.+.-.-..++-+- .. -...+..-.+..++.+.. +.++.+++|++|++|.+-.......|....... .
T Consensus 91 ~iKr~~l~~~~~~----~~---G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 91 YVKKIPLAEFEYK----AQ---GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEEEGGGTTTC----ST---TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEEEHHHhhhh----cC---CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 8887765544210 00 111222223445665543 456799999999999997665544443322111 1
Q ss_pred eecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEE--ecCceEEEE
Q 013084 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISV 245 (449)
Q Consensus 170 v~~~~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~G~~hs~~l 245 (449)
+..-++.+|+.+..- ....+++|++|.+.-.-..++-..+.+....... ..+.+++.+. .+....+++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--------~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--------GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--------CSSSCEEEEEEESSEEEEEEE
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--------cCCCcEEEEEEeCCCCEEEEE
Confidence 222235567765433 3467888999988877654443322221111111 1123444432 345678899
Q ss_pred eCCCCEEE--EeCCCCCcCC
Q 013084 246 SSSGRLYS--YGWSKYGQLG 263 (449)
Q Consensus 246 ~~~G~vy~--~G~n~~gqlG 263 (449)
+++|++.. +-.++.-.+|
T Consensus 232 t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBCC
T ss_pred cCCCeEEEeeeCHHHCCCcC
Confidence 99999988 7654444443
No 35
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=88.66 E-value=13 Score=33.13 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.4
Q ss_pred eEEEEeCCCCEEEEeC
Q 013084 241 HTISVSSSGRLYSYGW 256 (449)
Q Consensus 241 hs~~l~~~G~vy~~G~ 256 (449)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4577777888887654
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=87.20 E-value=19 Score=33.49 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=109.4
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEEEE
Q 013084 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (449)
Q Consensus 72 ~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG 149 (449)
.|.+++...+..++...++|.|..|=...... .........-....|..|+... .+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 47777755444444433339999995432211 0111111111123577776543 4455556889999995
Q ss_pred CCCCCcccCCCCCCcccceeeeccc--CccEEEEEeCCCe---EEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeee
Q 013084 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (449)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~h---~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 224 (449)
.... ..+..+. ...|..++..... .+.-..||.|..|-.... + +.....
T Consensus 156 ~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~-----------~~~~~~ 209 (344)
T 4gqb_B 156 LAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-K-----------PASQIG 209 (344)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-S-----------CEEECC
T ss_pred CCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-c-----------eeeeee
Confidence 4321 1122222 2357777654332 233457899999953211 1 100000
Q ss_pred eecCCCeEEEEEecC--ceEE-EEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC---ceEEEE
Q 013084 225 VDLQREKMVMVACGW--RHTI-SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVT 298 (449)
Q Consensus 225 ~~~~~~~i~~i~~G~--~hs~-~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~---h~~~lt 298 (449)
.......+..++... .+.+ .-..+|.|+.|=...... ...+.. ....|..|+...+ ..+.-.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----------~~~~~~-h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----------VLSSAV-HSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----------CEEEEC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----------EEEEcC-CCCCEEEEEEccCCCeEEEEEe
Confidence 011122344444332 2223 335788888884322111 111111 1234777776432 233356
Q ss_pred CCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCC-CeEEE--EeCCCCEEEEeC
Q 013084 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-RHTLA--VTERQNVFSWGR 360 (449)
Q Consensus 299 ~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-~h~~a--l~~~g~v~~wG~ 360 (449)
.||.|+.|-... +++ .... .....|..++... ...++ -..||.|..|=-
T Consensus 278 ~D~~i~vwd~~~-~~~-----------~~~~-~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 278 EDCSLAVLDSSL-SEL-----------FRSQ-AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp TTSCEEEECTTC-CEE-----------EEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEECCC-CcE-----------EEEc-CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999994322 221 1111 1234677776542 22233 347899999953
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.62 E-value=18 Score=32.57 Aligned_cols=236 Identities=13% Similarity=0.067 Sum_probs=115.3
Q ss_pred ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-cEEEEEEcCCcEEEEECCCCCcc
Q 013084 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQL 156 (449)
Q Consensus 78 ~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gql 156 (449)
.+.-..++++.+ |+++..+......+...... ...+.... .....|..++... ...++...+|.|..|-.......
T Consensus 9 ~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSS-SCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred CCceeEEEECCC-CCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence 344456778888 88888776544332221111 11111111 1233566666543 33444445899999965432211
Q ss_pred cCCCCCCcccceeeec-ccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEE
Q 013084 157 GLGTTEDSLVPQKLQA-FEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (449)
Q Consensus 157 G~~~~~~~~~p~~v~~-~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~ 233 (449)
.....+.. .....|..++...+ ..+.-..+|.|+.|-.... .+.....+......|.
T Consensus 86 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 86 --------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACY 145 (337)
T ss_dssp --------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEE
T ss_pred --------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceE
Confidence 00011110 12335666665543 3444567899999953221 1112222222234566
Q ss_pred EEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC--CceEEEECCCCEEEEEcC
Q 013084 234 MVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 234 ~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 309 (449)
.++.. ..+.+.-..+|.|+.|-..... ....+.. ....|..++... ...+....+|.|+.|-..
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 65543 3345556678889988643211 1111111 223466666543 344455678999999654
Q ss_pred CCCcccCCCCCCccccEEeecCCCCcEEEEEcC--CCeEEEEeCCCCEEEEeCC
Q 013084 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (449)
.... ...+. ....+..++.. ....++-..+|.++.|-..
T Consensus 214 ~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 214 EGRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp TTEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 3211 11112 22345555443 3344455578888888654
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=86.32 E-value=19 Score=32.70 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=115.9
Q ss_pred CCCEEEEeeCCCc-eEEEEc-----CCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC-----eeEEE
Q 013084 18 FRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTAY 86 (449)
Q Consensus 18 ~~~i~~i~~G~~~-~~~l~~-----~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~-----~~~~l 86 (449)
...|..|+..... .++... ||.|+.|-..... ..+.... -....|..++.... ..+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREI-EKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEE-EESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeee-cccCcEEEEEEcCCCCCCceEEEe
Confidence 4567777765533 333333 7888888543211 1111110 11235777777653 33444
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEE--------ecCcEEEEEEcCCcEEEEECCCCCcccC
Q 013084 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (449)
Q Consensus 87 ~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~--------~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (449)
..+ |.|..|-.....+ ....+. .....|..+. ....+.+.-..||.|+.|-......
T Consensus 87 ~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 87 DFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred cCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 456 9999995443210 001111 1123566663 2234566667899999996443210
Q ss_pred CCCCCcccceeeeccc---CccEEEEE------eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCC
Q 013084 159 GTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (449)
Q Consensus 159 ~~~~~~~~p~~v~~~~---~~~i~~i~------~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (449)
....+.... ...+..++ ......+.-..+|.|+.|-.... ..+.... ..
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~-~~ 209 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--------------ALRWETN-IK 209 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--------------EEEEEEE-CS
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--------------ceeeecC-CC
Confidence 011111111 22455555 33445555567899999964321 1111111 12
Q ss_pred CeEEEEEec-----CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCc---eEEEECCC
Q 013084 230 EKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH---TMAVTSDG 301 (449)
Q Consensus 230 ~~i~~i~~G-----~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h---~~~lt~~G 301 (449)
..|..++.. ....++-..+|.|+.|-......+ . ..+..........|..++..... .+.-..+|
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------K-GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------T-EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------c-ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 356666554 244555567888888864321111 0 01100001122347777665443 34446789
Q ss_pred CEEEEEcCC
Q 013084 302 KLYGWGWNK 310 (449)
Q Consensus 302 ~vy~wG~n~ 310 (449)
.|+.|-...
T Consensus 283 ~i~iwd~~~ 291 (357)
T 3i2n_A 283 GLHLWKYEY 291 (357)
T ss_dssp EEEEEEEEC
T ss_pred cEEEeecCC
Confidence 999997654
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=86.16 E-value=18 Score=32.17 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=101.8
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe---cCcEEEEEEcCCcEEE
Q 013084 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (449)
Q Consensus 71 ~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~---G~~h~~~lt~~G~vy~ 147 (449)
..|..++....+.+....+ |.|+.|- .+ .+..........+..+.. .....+..+.+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d---~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWK---EG-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEE---TT-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEc---CC-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4577888777777777777 9999994 11 111111112335655544 5667777888999999
Q ss_pred EECCCCCcccCCCCCCcccceeeecccCccEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeee
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 226 (449)
|-... ....+.......|..++.. ....++-..+|.|+.|-.... ..+..+.
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~ 222 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYE 222 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEE
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhh
Confidence 95110 0111111123345555432 223556678899999964321 1222222
Q ss_pred cCCCeEEEEEecCc-eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC-ceEEEECCCCEE
Q 013084 227 LQREKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLY 304 (449)
Q Consensus 227 ~~~~~i~~i~~G~~-hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~~G~vy 304 (449)
.....|..++...+ ..++-..+|.|+.|-..... +..........|..++...+ ..++-..+|.|+
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS------------LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC------------EEEEEECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc------------eeEEEeccCceEEEEEEccCCCEEEEeCCCcEE
Confidence 22345666665433 45566678899998542211 11111122334777765433 355667889999
Q ss_pred EEEcCC
Q 013084 305 GWGWNK 310 (449)
Q Consensus 305 ~wG~n~ 310 (449)
.|-...
T Consensus 291 iw~~~~ 296 (313)
T 3odt_A 291 IFSQEK 296 (313)
T ss_dssp EEESCG
T ss_pred EEeCCC
Confidence 997543
No 40
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.89 E-value=24 Score=32.63 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=13.5
Q ss_pred CcEEEEEEcCCcEEEEECC
Q 013084 133 DSHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n 151 (449)
..|++++ .+++||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3566666 78899999953
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=83.65 E-value=26 Score=31.89 Aligned_cols=259 Identities=10% Similarity=0.056 Sum_probs=121.0
Q ss_pred CCEEEEeeCCC------ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC---CeeEEEEcC
Q 013084 19 RPVLLISAGAS------HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSES 89 (449)
Q Consensus 19 ~~i~~i~~G~~------~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~---~~~~~l~~~ 89 (449)
..|..++.... ..+.-..||.|.+|-.... .....+.. ....|..++... ...+....+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-----------QCIKHYVG-HGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-----------CEEEEEES-CCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-----------eEeeeecC-CCCcEEEEEECCCCCCEEEEEeCC
Confidence 45666555433 3444557888888854321 11111221 123577777643 444555566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeec--ccCCCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCccc-------C
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLG-------L 158 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~--~l~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG-------~ 158 (449)
|.|+.|-..... ....+. ......|..++.. ..+.+....||.|+.|-......+. .
T Consensus 138 -g~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 138 -HALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp -SCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred -CeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 999999643211 111111 1123467777765 3456666789999999654321110 0
Q ss_pred CCCC--C------cccce-eeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCC
Q 013084 159 GTTE--D------SLVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (449)
Q Consensus 159 ~~~~--~------~~~p~-~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (449)
.... . ...|. .........|..++......+.-..+|.|+.|-.....+.-............+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 0000 0 00000 0000022345555554667777778999999975432221100001111112222222112
Q ss_pred CeEEEEEec----CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccC-CCcEEEEEeCCC--ceEEEECCCC
Q 013084 230 EKMVMVACG----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR-ESFISQISGGWR--HTMAVTSDGK 302 (449)
Q Consensus 230 ~~i~~i~~G----~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~-~~~i~~I~~G~~--h~~~lt~~G~ 302 (449)
..|..++.. ..+.++-..+|.|+.|-......+ ......+.... ...|..++...+ ..+.-..||.
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 223333322 344455567888988875332111 00111222111 244777765433 4444567888
Q ss_pred EEEEEc
Q 013084 303 LYGWGW 308 (449)
Q Consensus 303 vy~wG~ 308 (449)
|+.|-.
T Consensus 359 i~iwd~ 364 (366)
T 3k26_A 359 IWRWDR 364 (366)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888853
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.38 E-value=38 Score=33.59 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=96.8
Q ss_pred cEEEEEecCC---eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCC---CEEEEEecCc---EEEEEEcC
Q 013084 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL---RVKQIACGDS---HCLAVTVE 142 (449)
Q Consensus 72 ~i~~i~~g~~---~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~---~i~~i~~G~~---h~~~lt~~ 142 (449)
.|..++...+ ..+....+ +.|+.|-..... ....+.. ... .|..++...+ ..+..+.+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d-~~v~vwd~~~~~-----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDD-GSVVFYQGPPFK-----------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETT-TEEEEEETTTBE-----------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEeCC-CcEEEEeCCCcc-----------eeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4566655444 34444555 899999522110 0111111 122 5777776543 55566789
Q ss_pred CcEEEEECCCCCcccCCCCCCcccceeeec---ccCccEEEEEe-CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccc
Q 013084 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQA---FEGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (449)
Q Consensus 143 G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~---~~~~~i~~i~~-G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 218 (449)
|.|+.|-......+ ..+.. .....|..++. .....+....+|.|..|-....
T Consensus 229 g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~------------- 284 (615)
T 1pgu_A 229 RKISCFDGKSGEFL-----------KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS------------- 284 (615)
T ss_dssp CCEEEEETTTCCEE-----------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-------------
T ss_pred CeEEEEECCCCCEe-----------EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-------------
Confidence 99999965331111 11100 12235666655 3445555667899999964321
Q ss_pred ceeeeeeecC----CCeEEEEEe-cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCc
Q 013084 219 PEKVATVDLQ----REKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH 293 (449)
Q Consensus 219 p~~v~~~~~~----~~~i~~i~~-G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h 293 (449)
..+..+... ...+..+.. ...+.++...+|.|+.|-... ..+..........|..++. ..
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 285 -KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp -EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred -cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 111111111 112333222 455666777889999986432 1111111122345888887 66
Q ss_pred eEEEECCCCEEEEEcC
Q 013084 294 TMAVTSDGKLYGWGWN 309 (449)
Q Consensus 294 ~~~lt~~G~vy~wG~n 309 (449)
.+.-..+|.|..|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 6667788999998544
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=82.88 E-value=31 Score=32.30 Aligned_cols=267 Identities=9% Similarity=-0.003 Sum_probs=127.3
Q ss_pred eeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEE---EecCCeeEEEEcCCCEEEEEeCCCC
Q 013084 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV---TCGADHTTAYSESCMQVYSWGWGDF 101 (449)
Q Consensus 25 ~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i---~~g~~~~~~l~~~~g~v~~wG~n~~ 101 (449)
+--..+.+.-..||.++.|-....-.. ..+....+..+ .......+.-..+ |.|..|-....
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~ 129 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSNFN 129 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTTSC
T ss_pred eecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCCCc
Confidence 334455566667899999964321110 01111122222 2233344444566 88999843211
Q ss_pred CCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEE
Q 013084 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIK 179 (449)
Q Consensus 102 gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 179 (449)
.+..........|..++... .+.+.-..||.|+.|-...... ...+.. ....|.
T Consensus 130 ------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~-h~~~v~ 185 (420)
T 3vl1_A 130 ------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLIG-HRATVT 185 (420)
T ss_dssp ------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEEC-CSSCEE
T ss_pred ------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEcC-CCCcEE
Confidence 11222112234677777653 4566667889999996543211 111211 123466
Q ss_pred EEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe--------------------
Q 013084 180 MVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC-------------------- 237 (449)
Q Consensus 180 ~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-------------------- 237 (449)
.++.. ....+.-..||.|..|-......+ ..+.........+..++.
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTI-----------HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECCCCcee-----------EEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 65543 334455567888999964321100 000000000112222221
Q ss_pred ---cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC---ceEEEECCCCEEEEEcCCC
Q 013084 238 ---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 238 ---G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~ 311 (449)
...+.++-..+|.|+.|-..... .+..+.......|..++.... ..+.-..+|.|+.|-....
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12233445677888888542211 122222222234777776544 4455567899999965432
Q ss_pred CcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEE-eCCCCEEEEeCCC
Q 013084 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV-TERQNVFSWGRGT 362 (449)
Q Consensus 312 GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al-~~~g~v~~wG~n~ 362 (449)
.+ ....+.......|..+.......++. ..||.|..|--..
T Consensus 324 ~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 324 EC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred cC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 11 01222222334555555544444443 3688999996543
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=82.50 E-value=29 Score=31.69 Aligned_cols=241 Identities=13% Similarity=0.053 Sum_probs=121.6
Q ss_pred CCCEEEEeeCCCceE--EEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCC--CCcEEEEEec----CCeeEEEEcC
Q 013084 18 FRPVLLISAGASHSV--ALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (449)
Q Consensus 18 ~~~i~~i~~G~~~~~--~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~i~~g----~~~~~~l~~~ 89 (449)
...|..++....... .-..||.|.+|=.... ....+..+. ...|..++.. ..+.+....|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 345777766544333 3336888988854210 111111111 2357777764 4455555666
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC----cEEEEEEcCCcEEEEECCCCCcccCCCCCCcc
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (449)
|.|..|-.... ...+..........|..++... ...+..+.||.|..|-...... .
T Consensus 79 -g~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 79 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------T 138 (379)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------C
T ss_pred -CEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------e
Confidence 99999953321 0011111111234677777654 3566778899999996543211 1
Q ss_pred cceeeecccCccEEEEEeC---------------CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 166 VPQKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 166 ~p~~v~~~~~~~i~~i~~G---------------~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
.+..+. .....|..++.. ....+.-..+|.|+.|-.... ......+..+.....
T Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 139 SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 207 (379)
T ss_dssp CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccC
Confidence 111111 112346666544 345556678899999953211 011112222222234
Q ss_pred eEEEEEecC-----ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeeccc--CCCcEEEEEeCCC--ceEEEECCC
Q 013084 231 KMVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR--HTMAVTSDG 301 (449)
Q Consensus 231 ~i~~i~~G~-----~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~I~~G~~--h~~~lt~~G 301 (449)
.|..++... ...+....+|.|+.|-...... .....+... ....|..++...+ ..++-..+|
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 566666553 3445556789999986433110 000111111 1233666655433 344456788
Q ss_pred CEEEEEcCC
Q 013084 302 KLYGWGWNK 310 (449)
Q Consensus 302 ~vy~wG~n~ 310 (449)
.|+.|=.+.
T Consensus 279 ~i~iw~~~~ 287 (379)
T 3jrp_A 279 KVTLWKENL 287 (379)
T ss_dssp SEEEEEEEE
T ss_pred cEEEEeCCC
Confidence 999986553
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=82.11 E-value=35 Score=32.30 Aligned_cols=161 Identities=9% Similarity=0.001 Sum_probs=76.8
Q ss_pred CCCEEEEeeCC-CceEE--EEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCE
Q 013084 18 FRPVLLISAGA-SHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQ 92 (449)
Q Consensus 18 ~~~i~~i~~G~-~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~--~~~~~l~~~~g~ 92 (449)
...|..|+... ....+ -..||.|.+|-..... ......+..... -...|..++... .+.+....| |.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d-g~ 134 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------VGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKD-GQ 134 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------TTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccc------cCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCC-CE
Confidence 35677777655 33333 3377888888532100 000011111111 123577777644 344445566 99
Q ss_pred EEEEeCC--CCCCcCCCCCCCcccceeeccc------CCCCEEEEEe----cCcEEEEEEcCCcEEEEECCCCCcccCCC
Q 013084 93 VYSWGWG--DFGRLGHGNSSDLFTPLPIKAL------HSLRVKQIAC----GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (449)
Q Consensus 93 v~~wG~n--~~gqLG~~~~~~~~~p~~v~~l------~~~~i~~i~~----G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (449)
|..|-.. ..+++- .......+..+ ....+..+.. .....+.-+.||.|+.|-......
T Consensus 135 i~vwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESEV-----KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----- 204 (437)
T ss_dssp EEEEEEEEEEETTEE-----EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-----
T ss_pred EEEEEeccccCCcee-----eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-----
Confidence 9999532 111110 00011111111 2334555542 245566677889999996533111
Q ss_pred CCCcccceeeecc-cCccEEEEEeCC--CeEEEEecCCcEEEeeC
Q 013084 161 TEDSLVPQKLQAF-EGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 161 ~~~~~~p~~v~~~-~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~ 202 (449)
...+... ....|..++... ...+.-..||.|..|-.
T Consensus 205 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 205 ------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 1111111 123577776643 33444567899999964
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=81.82 E-value=67 Score=35.40 Aligned_cols=219 Identities=15% Similarity=0.162 Sum_probs=101.5
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-CcEEEEEEcCCcEEEEECCCCCcccCCCC
Q 013084 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (449)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (449)
.+....+ |.|..|-...... ..+. .....|..++.. ....+....+|.|+.|-......
T Consensus 1018 l~s~~~d-g~i~vwd~~~~~~------------~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------ 1077 (1249)
T 3sfz_A 1018 LISSSED-SVIQVWNWQTGDY------------VFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI------ 1077 (1249)
T ss_dssp EEEECSS-SBEEEEETTTTEE------------ECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC------
T ss_pred EEEEcCC-CEEEEEECCCCce------------EEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce------
Confidence 3333455 8999996433211 1111 112356666543 35566778899999996543211
Q ss_pred CCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC
Q 013084 162 EDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (449)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 239 (449)
...+.. ....|..++.. ....+.-..||.|+.|-......+ ..+......|..++...
T Consensus 1078 -----~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~--------------~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1078 -----ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------HELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp -----CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS--------------BCCCCCSSCEEEEEECS
T ss_pred -----eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee--------------eeeccCCCcEEEEEECC
Confidence 011111 11123333332 234455566788888854321111 11111122455544433
Q ss_pred c--eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeec---ccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcc
Q 013084 240 R--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE---ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (449)
Q Consensus 240 ~--hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~---~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqL 314 (449)
+ ..+.-..+|.|+.|-......+.. ..|.... ......|..++...+..++++.+|.|..|-......+
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSS 1211 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCcee
Confidence 2 334445788888886543222211 0111100 1112236666665555555555688888865432221
Q ss_pred cCCCCCCccccEEeecCCCCcEE--EEEcCCCeEEEEeCCCCEEEEe
Q 013084 315 GVGDNVDHCSPVQVKFPLDQKVV--QISCGWRHTLAVTERQNVFSWG 359 (449)
Q Consensus 315 G~g~~~~~~~p~~v~~~~~~~v~--~i~~G~~h~~al~~~g~v~~wG 359 (449)
..- . .....|. .++......++...+|.|+.|-
T Consensus 1212 ~~~-----------~-~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1212 QTF-----------Y-TNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp CCC-----------C-CSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred eee-----------e-ccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 110 0 0112222 3334444556667889999984
No 47
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=81.47 E-value=28 Score=30.76 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.1
Q ss_pred ceEEEECCCCEEEEEcC
Q 013084 293 HTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 293 h~~~lt~~G~vy~wG~n 309 (449)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 34667777777776543
No 48
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=81.31 E-value=24 Score=31.89 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=12.1
Q ss_pred CCceEEEECCCCEEEEEc
Q 013084 291 WRHTMAVTSDGKLYGWGW 308 (449)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~ 308 (449)
..|++++. +++||+.|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666655 779999983
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.94 E-value=56 Score=33.89 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=113.0
Q ss_pred CCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEe--cCCeeEEEEcCCCEEE
Q 013084 19 RPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--GADHTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~--g~~~~~~l~~~~g~v~ 94 (449)
.+|..++..... .++-..+|.|.+|-..... ....+... ...|..++. .....+....+ |.|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 456666655333 3334468899999543211 11112211 124555544 33445555566 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeec
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (449)
.|-...... ...+.. ....|..++... .+.+..+.||.|..|-..... .....+.
T Consensus 81 vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~- 137 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFE- 137 (814)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEE-
T ss_pred EEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEc-
Confidence 996543211 111111 223577666553 345566778999999643210 0111111
Q ss_pred ccCccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe----cCceEEEE
Q 013084 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISV 245 (449)
Q Consensus 173 ~~~~~i~~i~~G~---~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----G~~hs~~l 245 (449)
.....|..++... ...+.-..+|.|+.|-..... ....+.... ...+..++. .....++-
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCC--TTCCCEEEECCSTTCCEEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCC--CCCEEEEEEEECCCCCEEEEE
Confidence 1223567766543 344555678999999642210 011111111 122333332 33445555
Q ss_pred eCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC--ceEEEECCCCEEEEEcCC
Q 013084 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 246 ~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~ 310 (449)
..+|.|+.|-.... .....+.. ....|..++.... ..+.-..+|.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 67888888854221 11111211 1233666665443 344456789999996554
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=80.62 E-value=36 Score=31.53 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=92.4
Q ss_pred CEEEEEecC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeeccc--CccEEEEEeCC---CeEEEEecCCcE
Q 013084 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGA---EHSVAVAEDGEL 197 (449)
Q Consensus 125 ~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~---~h~~~Lt~~G~v 197 (449)
.|..|+... .+.+.-..||.|..|-.... ..+..+. ...|..++... ...+.-..||.|
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 577776544 34555568899999954321 1111121 23577776532 334556678999
Q ss_pred EEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceEE-EEeCCCCEEEEeCCCCCcCCCCCCCCceeee
Q 013084 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTI-SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (449)
Q Consensus 198 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~-~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~ 274 (449)
..|-......+ ...........+..++... .+.+ .-..++.|+.|-...... ..
T Consensus 207 ~~wd~~~~~~~------------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-----------~~ 263 (357)
T 4g56_B 207 LLWDTRKPKPA------------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-----------AQ 263 (357)
T ss_dssp EECCTTSSSCB------------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-----------CE
T ss_pred EEEECCCCcee------------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-----------eE
Confidence 99943211110 0000011122355555431 2233 335788888885322110 11
Q ss_pred eecccCCCcEEEEEeCC---CceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcC---CCeEEE
Q 013084 275 QLEALRESFISQISGGW---RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG---WRHTLA 348 (449)
Q Consensus 275 ~v~~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G---~~h~~a 348 (449)
.+. .....|..++... ...+.-.+||.|+.|=... +++ ... +.....|..|+.. ....+.
T Consensus 264 ~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~-----------~~~-~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 264 TSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV-----------FRD-LSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE-----------EEE-CCCSSCEEEEEECSSSTTEEEE
T ss_pred EEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE-----------eEE-CCCCCCEEEEEEeCCCCCEEEE
Confidence 111 1223477776543 2233356789999994322 111 111 1223467777754 223333
Q ss_pred EeCCCCEEEEeCCC
Q 013084 349 VTERQNVFSWGRGT 362 (449)
Q Consensus 349 l~~~g~v~~wG~n~ 362 (449)
-..||.|+.|=-..
T Consensus 330 ~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEEECC-
T ss_pred EcCCCeEEEEECCC
Confidence 45789999996433
No 51
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.61 E-value=37 Score=31.59 Aligned_cols=221 Identities=12% Similarity=0.029 Sum_probs=115.9
Q ss_pred EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC-----CeEEEEecCCcEEEeeCCC
Q 013084 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWGR 204 (449)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~h~~~Lt~~G~vy~~G~n~ 204 (449)
+...++.+++|+.|++|..-...-...+..... ......+..-++++|+.+.... ...+++|++|.+.-.-...
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARG-QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC-EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC-EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 456678899999999998875443322211110 0011122223467888876553 4678889999888665433
Q ss_pred CCCCCCCCCCCcccceeeeeeecCCCeEEE--EEecCceEEEEeCCCCEEEEeCC--CCCcCCCCCCCCceeeeeecccC
Q 013084 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVM--VACGWRHTISVSSSGRLYSYGWS--KYGQLGHGDFKDHLVPCQLEALR 280 (449)
Q Consensus 205 ~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~--i~~G~~hs~~l~~~G~vy~~G~n--~~gqlG~~~~~~~~~p~~v~~~~ 280 (449)
+-... + .......+. .+..++. +..+..+.+++|++|++|.+--. .--.+|....-. ..+..-.
T Consensus 129 ~~~~~------r-~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~~ 196 (327)
T 3uc1_A 129 FDSNR------S-GGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFNI 196 (327)
T ss_dssp GCCCC------S-SCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCCT
T ss_pred hhccc------c-CceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCCC
Confidence 21110 0 001111111 1233443 33466788999999999999876 433343322111 0122223
Q ss_pred CCcEEEEEeCC--CceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCC-CCcEEEE--EcCCCeEEEEeCCCCE
Q 013084 281 ESFISQISGGW--RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQI--SCGWRHTLAVTERQNV 355 (449)
Q Consensus 281 ~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i--~~G~~h~~al~~~g~v 355 (449)
+..|+.+..-. .+.+++|++|.+.-.=..++-..+.+..- -..+++.. +..++.+ ..+....++++++|.+
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ 272 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG----VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGV 272 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC----EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc----EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeE
Confidence 45677766543 35677888887665543333222111100 00111111 2234432 2356788899999999
Q ss_pred EEEeCCCCCCCC
Q 013084 356 FSWGRGTNGQLG 367 (449)
Q Consensus 356 ~~wG~n~~gqLG 367 (449)
.-+-..+--.+|
T Consensus 273 ir~~~~~i~~~g 284 (327)
T 3uc1_A 273 IRTAARQVRKAG 284 (327)
T ss_dssp EEEEGGGSCBCC
T ss_pred EEEehhhccccC
Confidence 888555444444
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=79.99 E-value=43 Score=31.97 Aligned_cols=239 Identities=9% Similarity=0.052 Sum_probs=129.7
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEecC-cEEEEEEcCCcEEEEE
Q 013084 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACGD-SHCLAVTVEGEVQSWG 149 (449)
Q Consensus 73 i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l--~~~~i~~i~~G~-~h~~~lt~~G~vy~wG 149 (449)
+..+.....+.+.-..| |.|..|-.... ..+..+ ....|..++... ...+.-..||.|..|-
T Consensus 125 ~~~~~~~~~~l~sgs~d-g~i~vwd~~~~--------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADD-KMIRVYDSINK--------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEEETTEEEEEETT-SCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEE
T ss_pred EEEEEECCCEEEEEcCC-CcEEEEECCCC--------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEE
Confidence 45566666666666777 99999964321 111111 233677777654 3566667899999996
Q ss_pred CCCCCcccCCCCCCcccceeeecccCccEEEEEeC----CCeEEEEecCCcEEEeeCCCCCCCCCCCCC---------Cc
Q 013084 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRN---------DR 216 (449)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~---------~~ 216 (449)
..... ....+.. ....|..++.. ....+.-..+|.|+.|-............. ..
T Consensus 190 ~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 190 IKKGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp TTTTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred CCCCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 53211 0111111 12345555432 244556678999999975543222110000 00
Q ss_pred ccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC--Cce
Q 013084 217 LIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHT 294 (449)
Q Consensus 217 ~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~ 294 (449)
..+..+..+......+..++......+.-..+|.|+.|-...... ...+. .....|..++... ...
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-----------LYILS-GHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTTTEE
T ss_pred CCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEec-CCCCCEEEEEEcCCCCEE
Confidence 011112222223446777777777777788899999996432111 11111 1123366655543 344
Q ss_pred EEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeEEEEeCCCCEEEEeCCC
Q 013084 295 MAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGT 362 (449)
Q Consensus 295 ~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~ 362 (449)
+.-..+|.|+.|-.... .+...-......|..++....+.+.-..||.|..|=.+.
T Consensus 326 ~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENG------------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEeCCCcEEEEECCCC------------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 55567889999964431 111111122356777777777777778999999997654
No 53
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.33 E-value=40 Score=31.30 Aligned_cols=220 Identities=11% Similarity=0.003 Sum_probs=116.9
Q ss_pred eeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCC--eeecCCCCCcEEEEEecC-----CeeEEEEcCCCEEEEEe
Q 013084 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWG 97 (449)
Q Consensus 25 ~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~i~~g~-----~~~~~l~~~~g~v~~wG 97 (449)
+....+.+++++.|++|..--..--..+ ....-.| ..++...+.+|+.+.... .+.+++|++ |.+.-.-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~---r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~ 125 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEAS---RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKSK 125 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCC---SSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCC---ccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEeE
Confidence 4456667889999999977533221111 1111122 123333467788876654 467788887 9888765
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECC--CCCcccCCCCCCcccceeeecc
Q 013084 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRN--QNGQLGLGTTEDSLVPQKLQAF 173 (449)
Q Consensus 98 ~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~v~~~ 173 (449)
..++-... ..-...+..-.+..++.+ +.+.++.+++|++|++|.+-.. .--..|...... ..+..-
T Consensus 126 l~~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~ 195 (327)
T 3uc1_A 126 LTDFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFN 195 (327)
T ss_dssp GGGGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCC
T ss_pred HHHhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCC
Confidence 44332110 000111122234455544 3467889999999999999877 443343332211 112223
Q ss_pred cCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEE--ecCceEEEEeCCC
Q 013084 174 EGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISVSSSG 249 (449)
Q Consensus 174 ~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~G~~hs~~l~~~G 249 (449)
++.+|+.+..-. .+.+++|++|.+.-.-..++-..+.+... .....+...+..++.+. .+....++++++|
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 456777775543 46788899997765543333221111110 00001111122344332 3567889999999
Q ss_pred CEEEEeCCCCCcCC
Q 013084 250 RLYSYGWSKYGQLG 263 (449)
Q Consensus 250 ~vy~~G~n~~gqlG 263 (449)
++..+-...--.+|
T Consensus 271 ~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 271 GVIRTAARQVRKAG 284 (327)
T ss_dssp CEEEEEGGGSCBCC
T ss_pred eEEEEehhhccccC
Confidence 99887654444443
No 54
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=79.32 E-value=38 Score=30.94 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=13.1
Q ss_pred cEEEEEEcCCcEEEEECC
Q 013084 134 SHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (449)
-+.++++.+|++|.....
T Consensus 93 p~gia~d~~g~l~v~d~~ 110 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVA 110 (329)
T ss_dssp EEEEEECTTSCEEEEETT
T ss_pred ceEEEECCCCCEEEEECC
Confidence 456788888888877653
No 55
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=77.22 E-value=41 Score=30.22 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=11.8
Q ss_pred CCeEEEEecCCcEEEee
Q 013084 185 AEHSVAVAEDGELYGWG 201 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~G 201 (449)
..|++++. +++||++|
T Consensus 192 ~~~~~~~~-~~~i~v~G 207 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVG 207 (306)
T ss_dssp BSCEEEEE-TTEEEEEC
T ss_pred hcceEEEE-CCEEEEEe
Confidence 35666655 88999998
No 56
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=76.38 E-value=28 Score=27.99 Aligned_cols=108 Identities=12% Similarity=0.168 Sum_probs=60.8
Q ss_pred CCCEEEEEecC-cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeC-CCeEEEEecCCcEEEe
Q 013084 123 SLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGW 200 (449)
Q Consensus 123 ~~~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~h~~~Lt~~G~vy~~ 200 (449)
..+.+++.|-. .+.+-+..||.|-.-.... ....--.+... ...++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEeec
Confidence 45788999976 6777888899998553221 11111112221 1247777765 5778899999999964
Q ss_pred eCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEE
Q 013084 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (449)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~ 253 (449)
-. ..+.....++........-+..+..| ..++++.+|++|.
T Consensus 98 ~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp CC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred cc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 21 11112222222222111223333334 4789999999996
No 57
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=76.06 E-value=36 Score=30.79 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=11.8
Q ss_pred CCeEEEEecCCcEEEee
Q 013084 185 AEHSVAVAEDGELYGWG 201 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~G 201 (449)
..|++++. +++||++|
T Consensus 113 ~~~~~~~~-~~~iyv~G 128 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVG 128 (308)
T ss_dssp BTCEEEEE-TTEEEEEC
T ss_pred cccEEEEE-CCEEEEEc
Confidence 35666655 88999998
No 58
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=74.79 E-value=50 Score=30.03 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=119.0
Q ss_pred cEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec----CcEEEEEEcCC
Q 013084 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (449)
Q Consensus 72 ~i~~i~~g~~~--~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l--~~~~i~~i~~G----~~h~~~lt~~G 143 (449)
.|..++...+. .+.-..+ |.|+.|=.... ....+..+ ....|..++.. ....+....||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 46666655433 3333356 88998853210 11122222 23367777764 45666777899
Q ss_pred cEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC----eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccc
Q 013084 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE----HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (449)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~----h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 219 (449)
.|..|-.... ...+..........|..++.... ..+....+|.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999954321 00011111112335777766543 456667899999996433211 011
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcE
Q 013084 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (449)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G---------------~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 284 (449)
. .+......|..++.. ....++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 I---IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp E---EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred E---EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 1 111123345555543 3445556678999988532111 0111111111122347
Q ss_pred EEEEeCCC-----ceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeec--CCCCcEEEEEcCC--CeEEEEeCCCCE
Q 013084 285 SQISGGWR-----HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGW--RHTLAVTERQNV 355 (449)
Q Consensus 285 ~~I~~G~~-----h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~--~h~~al~~~g~v 355 (449)
..++.... ..+....+|.|..|-....... ....+.. .....|..++... ...++-..+|.|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc---------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 77766543 4455567899999975542100 0011111 1234566655543 334445688999
Q ss_pred EEEeCC
Q 013084 356 FSWGRG 361 (449)
Q Consensus 356 ~~wG~n 361 (449)
+.|=.+
T Consensus 281 ~iw~~~ 286 (379)
T 3jrp_A 281 TLWKEN 286 (379)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999654
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=73.76 E-value=89 Score=32.44 Aligned_cols=243 Identities=13% Similarity=0.050 Sum_probs=120.3
Q ss_pred CCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCC--CCcEEEEEec----CCeeEEEEcC
Q 013084 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (449)
Q Consensus 18 ~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~i~~g----~~~~~~l~~~ 89 (449)
...|..++.... ..+.-..||.|.+|-.... ....+..+. ...|..++.. ..+.+....|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 345666665433 3344457999999953210 111111111 2357777764 3445555666
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC----cEEEEEEcCCcEEEEECCCCCcccCCCCCCcc
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (449)
|.|+.|-.... ...+..........|..++... ...+..+.||.|+.|-.......
T Consensus 77 -g~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------- 136 (753)
T 3jro_A 77 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------- 136 (753)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------
T ss_pred -CeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------
Confidence 99999953321 0011111112234677777653 46677788999999975432110
Q ss_pred cceeeecccCccEEEEEeCC---------------CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 166 VPQKLQAFEGVSIKMVAAGA---------------EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 166 ~p~~v~~~~~~~i~~i~~G~---------------~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
....+.. ....|..++... ...+.-..||.|+.|-.... ......+..+.....
T Consensus 137 ~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~----------~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 137 SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 205 (753)
T ss_dssp CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC----------cccceeeeeecCCCC
Confidence 1111111 122456665433 34555667899999953221 011112222222234
Q ss_pred eEEEEEecCc-----eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeC--CCceEEEECCCCE
Q 013084 231 KMVMVACGWR-----HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKL 303 (449)
Q Consensus 231 ~i~~i~~G~~-----hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~v 303 (449)
.|..++.... ..+.-..+|.|+.|-.......-. ...... .-....|..++.. ..+.+.-..||.|
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~------~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK------KTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB------CCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce------eEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 6777766533 445556789999996543211000 000000 0011123334332 3334444678999
Q ss_pred EEEEcCC
Q 013084 304 YGWGWNK 310 (449)
Q Consensus 304 y~wG~n~ 310 (449)
+.|-.+.
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9997664
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=73.38 E-value=57 Score=30.02 Aligned_cols=301 Identities=10% Similarity=-0.021 Sum_probs=141.5
Q ss_pred CCCCEEEEeeCC---CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeee--c--CCCCCcEEEEEecC---CeeEEE
Q 013084 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--S--ALDGHEIVSVTCGA---DHTTAY 86 (449)
Q Consensus 17 ~~~~i~~i~~G~---~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v--~--~~~~~~i~~i~~g~---~~~~~l 86 (449)
-...|..++... ...+.-..||.|.+|-.........-. ......+ . ......|..++... ...+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456788888754 334445579999999654322111000 0000000 0 01223577777643 345555
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-----cEEEEEEcCCcEEEEECCCCCcccCCCC
Q 013084 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (449)
Q Consensus 87 ~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (449)
..+ |.|..|-..... +...... ...+..+.... ...++-..+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTLQ------------TADVFNF-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTTE------------EEEEEEC-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCCc------------cceeccC-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 566 999999643211 1111111 22455554432 2566667899999996543211
Q ss_pred CCcccceeeecccCccEEEEEeCCCe---EEEEecCCcEEEeeCCCCCCCCC-CCC-CCcccceeeeeeecCCCeEEEEE
Q 013084 162 EDSLVPQKLQAFEGVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNLGL-GDR-NDRLIPEKVATVDLQREKMVMVA 236 (449)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~i~~G~~h---~~~Lt~~G~vy~~G~n~~gqlg~-~~~-~~~~~p~~v~~~~~~~~~i~~i~ 236 (449)
...+.. ....|..++..... .+.-..+|.|+.|-.......-. -.. ..................|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 22356666654432 44567899999997543221100 000 00000000000011123566665
Q ss_pred ecC--ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEEECCCCEEEEEcCCCCcc
Q 013084 237 CGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (449)
Q Consensus 237 ~G~--~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqL 314 (449)
... .+.+....+|.|+.|-......+-.-... ..........+..........++...++.|+.|-....-
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-- 325 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-- 325 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceecccc-----ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--
Confidence 543 35556678899999976443221110000 000001111122222334455666778899999754321
Q ss_pred cCCCCCCccccEEeecCCCCcEEEEEcCC--CeEEEEeCCCCEEEEeCCCC
Q 013084 315 GVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWGRGTN 363 (449)
Q Consensus 315 G~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~h~~al~~~g~v~~wG~n~~ 363 (449)
+...-......|..++... ...+.-..||.|+.|=-...
T Consensus 326 ----------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 326 ----------QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ----------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ----------ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1111111234566655543 34455567999999965443
No 61
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=72.47 E-value=38 Score=30.64 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.6
Q ss_pred CceEEEEeCCCCEEEEeCC
Q 013084 239 WRHTISVSSSGRLYSYGWS 257 (449)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n 257 (449)
..|+++. -+++||.+|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3566655 57799999953
No 62
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=70.59 E-value=30 Score=31.05 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=11.5
Q ss_pred CeEEEEecCCcEEEeeC
Q 013084 186 EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 186 ~h~~~Lt~~G~vy~~G~ 202 (449)
.|++++. ++++|++|-
T Consensus 197 ~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cccEEEE-CCEEEEECC
Confidence 4555554 789999983
No 63
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=70.43 E-value=59 Score=28.97 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=77.0
Q ss_pred ccCccEEEEEeC-CCeEEEEecCCc-EEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCC
Q 013084 173 FEGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR 250 (449)
Q Consensus 173 ~~~~~i~~i~~G-~~h~~~Lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~ 250 (449)
+.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+.... .-++.-.........+++.+|+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECC--CCCEEEEecCCCEEEEECCCCC
Confidence 334455555566 555666777887 455543210 0 01111122222111 2234433334455667777776
Q ss_pred -EEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC-ceEEEECC-CC-EEEEEcCCCCcccCCCCCCccccE
Q 013084 251 -LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSD-GK-LYGWGWNKFGQVGVGDNVDHCSPV 326 (449)
Q Consensus 251 -vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~~-G~-vy~wG~n~~GqLG~g~~~~~~~p~ 326 (449)
+|.++... .|.-+..+.+..+. |+.... ..++++.+ |+ +|.++.+... ......|.
T Consensus 157 ~~w~~~~~~-------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~ 216 (276)
T 3no2_A 157 LLNSVKLSG-------------TPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVA 216 (276)
T ss_dssp EEEEEECSS-------------CCCEEEECTTSCEE-EECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEE
T ss_pred EEEEEECCC-------------CccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcEEEEecCCCCC------Cccccccc
Confidence 56666421 12222223333344 444444 45667766 65 5666543211 00112344
Q ss_pred EeecCCCCcEEEEEc--C---------CCeEEEEeCCCCEEEEeCCCCCCCCC
Q 013084 327 QVKFPLDQKVVQISC--G---------WRHTLAVTERQNVFSWGRGTNGQLGH 368 (449)
Q Consensus 327 ~v~~~~~~~v~~i~~--G---------~~h~~al~~~g~v~~wG~n~~gqLG~ 368 (449)
-+....+..+. |+. | ..+.+.++.+|++ .|=.+...+.|.
T Consensus 217 ~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 217 QLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 44444344443 333 2 3357788888886 565555555543
No 64
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=68.42 E-value=60 Score=30.91 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=43.2
Q ss_pred EEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeC
Q 013084 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (449)
Q Consensus 126 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~ 202 (449)
|.+|++ +...+++.++|.|..|-.....+. .....++ ..+.++.+-....++++.+|.|+.|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 777788889999999975443211 0111111 235566665556788899999999953
No 65
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=67.84 E-value=21 Score=32.06 Aligned_cols=17 Identities=6% Similarity=-0.191 Sum_probs=12.1
Q ss_pred cEEEEEEcCCcEEEEECC
Q 013084 134 SHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (449)
.|++++. +++||.+|-.
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 4555554 7899999853
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=67.05 E-value=87 Score=29.63 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=95.3
Q ss_pred eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CcEEEEEEcCCcEEEEECCCCCcccC
Q 013084 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGL 158 (449)
Q Consensus 82 ~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (449)
+.+.-..+ |.|..|-.+...... ....+..........|..|+.. ....+....+|.|+.|-.......
T Consensus 196 ~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-- 267 (430)
T 2xyi_A 196 YLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-- 267 (430)
T ss_dssp EEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--
T ss_pred eEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--
Confidence 33334445 999999765432110 0111111111123357777764 345556678999999976532100
Q ss_pred CCCCCcccceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEE
Q 013084 159 GTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV 235 (449)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~i~~G~~---h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i 235 (449)
.....+. .....|..++.... ..+.-..+|.|..|-....++ + +..+......|..+
T Consensus 268 ------~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~--~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 268 ------KPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------K--LHSFESHKDEIFQV 327 (430)
T ss_dssp ------SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------C--SEEEECCSSCEEEE
T ss_pred ------cceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------C--eEEeecCCCCEEEE
Confidence 0011111 12235666665432 233446789999997543211 1 11222223456666
Q ss_pred EecCc---eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeeccc--CCCcEEEEEeCCC---ceEEEECCCCEEEEE
Q 013084 236 ACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR---HTMAVTSDGKLYGWG 307 (449)
Q Consensus 236 ~~G~~---hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~I~~G~~---h~~~lt~~G~vy~wG 307 (449)
+.... ..+.-..+|.|..|-....+..-.........|..+... ....|..++-... ..+....+|.|.+|-
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 65432 244455788888886544221100000000001122211 1234777665443 344456788888886
Q ss_pred cC
Q 013084 308 WN 309 (449)
Q Consensus 308 ~n 309 (449)
..
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=66.77 E-value=72 Score=28.62 Aligned_cols=196 Identities=10% Similarity=0.050 Sum_probs=96.1
Q ss_pred CCCEEEEeeCCC-----ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEe--------cCCeeE
Q 013084 18 FRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--------GADHTT 84 (449)
Q Consensus 18 ~~~i~~i~~G~~-----~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~--------g~~~~~ 84 (449)
...|..++.... ..+.-..||.|..|-..... .....+... ...|..+.. ...+.+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEec-ccceEEEeeccccccCCCccEEE
Confidence 345666666543 33444568888888543321 011112111 234555532 233444
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccC---CCCEEEEE------ecCcEEEEEEcCCcEEEEECCCCCc
Q 013084 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH---SLRVKQIA------CGDSHCLAVTVEGEVQSWGRNQNGQ 155 (449)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~---~~~i~~i~------~G~~h~~~lt~~G~vy~wG~n~~gq 155 (449)
.-..+ |.|..|-...... ....+.... ...+..++ ....+.+.-..+|.|+.|-.....
T Consensus 134 ~~~~d-~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 201 (357)
T 3i2n_A 134 TGSRD-GTVKVWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA- 201 (357)
T ss_dssp EEETT-SCEEEECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-
T ss_pred EEeCC-CeEEEEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-
Confidence 45566 8999995433210 011111111 22566665 334555666778999999653311
Q ss_pred ccCCCCCCcccceeeecccCccEEEEEeC-----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCC
Q 013084 156 LGLGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (449)
Q Consensus 156 lG~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (449)
+..... ....|..++.. ....++-..+|.|+.|-......+ ...+ ...+.....
T Consensus 202 -----------~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~--~~~~~~~~~ 260 (357)
T 3i2n_A 202 -----------LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGFA--SVSEKAHKS 260 (357)
T ss_dssp -----------EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEEE--EEEEECCSS
T ss_pred -----------eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------ccee--eeccCCCcC
Confidence 111111 12356666654 355556677899999853221000 0000 001112234
Q ss_pred eEEEEEecCc---eEEEEeCCCCEEEEeCC
Q 013084 231 KMVMVACGWR---HTISVSSSGRLYSYGWS 257 (449)
Q Consensus 231 ~i~~i~~G~~---hs~~l~~~G~vy~~G~n 257 (449)
.|..++.... ..+.-..+|.|+.|-..
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 6777766554 33445678999888754
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=66.76 E-value=71 Score=28.54 Aligned_cols=253 Identities=11% Similarity=0.000 Sum_probs=123.5
Q ss_pred CCCCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec--CC-eeEEEEcCC
Q 013084 16 APFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--AD-HTTAYSESC 90 (449)
Q Consensus 16 ~~~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g--~~-~~~~l~~~~ 90 (449)
+....|..++.... ..++-..||.|++|-..... ....+..+.. ....|..++.. .. +.+.-..+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETT-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCC-
Confidence 44567777776533 33444588999999643221 0001112211 12346665543 33 45555566
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeecc-cCCCCEEEEEec-CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccce
Q 013084 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (449)
Q Consensus 91 g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~-l~~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (449)
|.|+.|-....++ ...+.. .....|..++.. ....+....||.|+.|-...... ........+.
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNS 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCS
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCee
Confidence 9999995411111 122221 023356666554 56677778899999995321000 0000000000
Q ss_pred eeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEec---CceEEEE
Q 013084 169 KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHTISV 245 (449)
Q Consensus 169 ~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~hs~~l 245 (449)
.... ....|..++...+..++-+.+|.|+.|-....+.. ...... ......+..++.. ....++-
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEE--SGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEE--CSCSSCEEEEEECSGGGCEEEEE
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeee--cCCCCceeEEEECCCCCCEEEEE
Confidence 0001 22367788877777777788999999975431110 011111 1112345555554 3455556
Q ss_pred eCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccC--------CCcEEEEEeCC--CceEEEECCCCEEEEEcC
Q 013084 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--------ESFISQISGGW--RHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 246 ~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--------~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 309 (449)
..+|.++.|-....+.--.. ... ..+.... ...|..++... ...+.-..+|.|+.|=..
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNS--SKR---FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTC--TTC---EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ecCCcEEEEEEcCCCccccc--ccc---eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 67888888765443100000 000 0011000 11466666543 334455678899999644
No 69
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=66.52 E-value=82 Score=29.96 Aligned_cols=108 Identities=7% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEE
Q 013084 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVT 140 (449)
Q Consensus 61 ~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt 140 (449)
.|.....+.. |..+++ ....+++.++ +.|..|=-....+. ..+..+ ...+.++.+-....++++
T Consensus 80 ~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~ 143 (388)
T 1xip_A 80 TFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVILN 143 (388)
T ss_dssp CCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEEE
T ss_pred cceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEEE
Confidence 4533333443 889999 6667777777 99999964443221 111111 224666666555688889
Q ss_pred cCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013084 141 VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (449)
Q Consensus 141 ~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~ 200 (449)
.||.|+.|--... ++ . .+. ..|..++-...-.++...||++..|
T Consensus 144 ~dG~L~v~dl~~~-~~---------~--~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 144 SVNDLSALDLRTK-ST---------K--QLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TTSEEEEEETTTC-CE---------E--EEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEccCC-cc---------c--ccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 9999999954321 11 0 111 2466666666665555666766655
No 70
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=66.39 E-value=89 Score=29.53 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=119.6
Q ss_pred cEEEEEecCC--eeEEE-EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC---cEEEEEEcCCcE
Q 013084 72 EIVSVTCGAD--HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEV 145 (449)
Q Consensus 72 ~i~~i~~g~~--~~~~l-~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~---~h~~~lt~~G~v 145 (449)
.|..++.... ..++. ..+ |.|+.|-........ .......+..........|..++... .+.+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSC--CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCC-CcEEEEECCCccccc--CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 3555555543 23333 345 899999754321100 00000111111111122455555432 256666778999
Q ss_pred EEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceee
Q 013084 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (449)
Q Consensus 146 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 222 (449)
..|-.+...... ....+..........|..++.. ....+....+|.|+.|-...... ..+ +
T Consensus 207 ~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~--~ 270 (430)
T 2xyi_A 207 CLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKP--S 270 (430)
T ss_dssp EEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSC--S
T ss_pred EEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccc--e
Confidence 999765422110 0011111111122357777664 34444556899999996543210 011 1
Q ss_pred eeeecCCCeEEEEEecCc---eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCc---eEE
Q 013084 223 ATVDLQREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH---TMA 296 (449)
Q Consensus 223 ~~~~~~~~~i~~i~~G~~---hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h---~~~ 296 (449)
..+......|..|+.... ..+.-..+|.|..|-.....+ |..........|..|+..... .+.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 111122335666655432 233445788898887543221 111111122347777665432 344
Q ss_pred EECCCCEEEEEcCCCCcccCCCCCCccccEEeecC--CCCcEEEEEcCCC---eEEEEeCCCCEEEEeCC
Q 013084 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP--LDQKVVQISCGWR---HTLAVTERQNVFSWGRG 361 (449)
Q Consensus 297 lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~---h~~al~~~g~v~~wG~n 361 (449)
-..+|.|..|-....+..-.........|..+... ....|..++.... ..+....+|.|..|-..
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 45789999997655332110000000012222211 2345776665433 34445578888888643
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=65.72 E-value=84 Score=28.96 Aligned_cols=236 Identities=10% Similarity=0.084 Sum_probs=110.9
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CcEEEEEEcCCcEEE
Q 013084 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (449)
Q Consensus 72 ~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G--~~h~~~lt~~G~vy~ 147 (449)
.|..++...+ +.+....+ |.|+.|- ..++ ....+. .....|..++.. ..+.+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-g~i~i~~--~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-GELRLWN--KTGA----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEE--TTSC----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCC-CeEEEEe--CCCC----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 5677666533 34444556 8999994 1111 111111 123357777664 345666778899999
Q ss_pred EECCCCCcccCCCCCCcccceeee----cccCccEEEEE-eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceee
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQ----AFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~i~-~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 222 (449)
|-......+..-.... .....+. ......+..++ ......++...+|.|+.|-..... + +
T Consensus 176 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~------------~--~ 240 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT------------P--T 240 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS------------C--S
T ss_pred EECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc------------e--e
Confidence 9754321111000000 0000000 00000021111 123445666778899998643210 0 1
Q ss_pred eeeecCCCeEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC-ceEEEEC
Q 013084 223 ATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTS 299 (449)
Q Consensus 223 ~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~ 299 (449)
..+......|..++.. ....+.-..+|.|+.|-...... ...+. .....|..++.... ..+....
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-----------QNCFY-GHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-----------SEEEC-CCSSCEEEEEEETTTEEEEEET
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-----------ceEec-CCCccEEEEEECCCCEEEEEeC
Confidence 1111112345554443 33445556788888885432110 11111 11233666655433 4555567
Q ss_pred CCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcC--CCeEEEEeCCCCEEEEeC
Q 013084 300 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGR 360 (449)
Q Consensus 300 ~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~ 360 (449)
+|.|+.|-.... .+..........|..++.. ....++-..+|.|+.|-.
T Consensus 309 d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 309 DGSVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TSEEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CCcEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 889999965431 1111111223456666554 334445567889999964
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=64.82 E-value=90 Score=29.00 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=78.7
Q ss_pred EeeCCCceEEE---EcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC---CeeEEEEcCCCEEEEEe
Q 013084 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWG 97 (449)
Q Consensus 24 i~~G~~~~~~l---~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~---~~~~~l~~~~g~v~~wG 97 (449)
+++......++ ..+|.|++|-....+.+.. ..+ .+..- ...|..++... ...+.-..| |.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~h-~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCGH-TAPVLDIAWCPHNDNVIASGSED-CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCCC-SSCEEEEEECTTCTTEEEEEETT-SEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEecC-CCCEEEEEeCCCCCCEEEEEeCC-CeEEEEE
Confidence 44555555544 3578999997655443310 001 11111 23577777643 344444556 9999997
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc---EEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeee-cc
Q 013084 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ-AF 173 (449)
Q Consensus 98 ~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~-~~ 173 (449)
....+... ....+..........|..++.... ..+.-..||.|+.|-..... ....+. ..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~ 174 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPDV 174 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTTT
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecCC
Confidence 55432211 011111111112346777776543 45555789999999654311 011110 11
Q ss_pred cCccEEEEEeCC--CeEEEEecCCcEEEeeC
Q 013084 174 EGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 174 ~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~ 202 (449)
....|..++... ...+.-..||.|+.|-.
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 233566666543 34445567899999963
No 73
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.99 E-value=88 Score=28.63 Aligned_cols=260 Identities=9% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEE--EEecCcEEEEEEcCCcEEEEECCCCCccc
Q 013084 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLG 157 (449)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~--i~~G~~h~~~lt~~G~vy~wG~n~~gqlG 157 (449)
..+.+++|.+ |.+--.-...+.....+.. -...+..-.+..+.. ++.+.++.+++|+.|++|.+-...-...+
T Consensus 8 e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 8 ENIVVMLTKK-GFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp CEEEEEEETT-CBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCEEEEEeCC-CEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 4456778888 8877654333322111000 011111122334544 35567889999999999998654432222
Q ss_pred CCCCCCcccceeeecccCccEEEEEeC-----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeE
Q 013084 158 LGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (449)
Q Consensus 158 ~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (449)
..... ......+..-++.+|+.+... ..+.+++|++|.++-.-..++-... ........+.. +..+
T Consensus 83 r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-------~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 83 RASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-------SRGVIVIKLND-KDFV 153 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred ccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-------CCcEEEEecCC-CCEE
Confidence 11111 011122333345677777553 4568889999999987654431100 01111111221 3455
Q ss_pred EEEEe--cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEe--CCCceEEEECCCCEEEEEc
Q 013084 233 VMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGW 308 (449)
Q Consensus 233 ~~i~~--G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~ 308 (449)
+.+.. +..+.++++++|.+..+-.++.-..|....-. ..+....+..|..+.. ...+.++++++|.+...-.
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 55443 45678899999999888765544444321110 0111112334555433 3456788889998777776
Q ss_pred CCCCcccCCCCCCccccEEeecC--CCCcEEEE--EcCCCeEEEEeCCCCEEEEeCC
Q 013084 309 NKFGQVGVGDNVDHCSPVQVKFP--LDQKVVQI--SCGWRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 309 n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~i--~~G~~h~~al~~~g~v~~wG~n 361 (449)
.++-..+.+..-.. .+.+. ....+..+ .......++++++|.+.-.-.+
T Consensus 230 ~e~~~~~R~~kGv~----~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 230 SKISELKRGATGYT----SYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp GGSCBCCTTCCCEE----CSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred HHhcccCCCCCCEE----eeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 66644443221110 01111 11234332 2244556667777766554433
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=61.79 E-value=1.1e+02 Score=28.81 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=72.6
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCC--CCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCC
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGR 103 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gq 103 (449)
....+++--|+.||+|=... |+ ...+-.+. ...|..|+...+ +.+.-..| |.|..|-......
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~~ 181 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKR 181 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEE
T ss_pred CCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCCcE
Confidence 34567777899999995432 11 11111111 234777776543 33344566 9999996433211
Q ss_pred cCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEe
Q 013084 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (449)
Q Consensus 104 LG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~ 183 (449)
..........+..++......+.-..++.++.|-....... ...+.. ....+..+..
T Consensus 182 ------------~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~----------~~~~~~-h~~~~~~~~~ 238 (420)
T 4gga_A 182 ------------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSG-HSQEVCGLRW 238 (420)
T ss_dssp ------------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEEC-CSSCEEEEEE
T ss_pred ------------EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee----------eEEecc-cccceeeeee
Confidence 11111123367777776666666778888888854321110 011111 1112333333
Q ss_pred --CCCeEEEEecCCcEEEeeC
Q 013084 184 --GAEHSVAVAEDGELYGWGW 202 (449)
Q Consensus 184 --G~~h~~~Lt~~G~vy~~G~ 202 (449)
.....+....||.++.|-.
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCeeeeeeccccceEEee
Confidence 3345555677888988864
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=61.67 E-value=1e+02 Score=28.59 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=79.5
Q ss_pred EEecCCeeEEEE---cCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CcEEEEEEcCCcEEEEE
Q 013084 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWG 149 (449)
Q Consensus 76 i~~g~~~~~~l~---~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---~~h~~~lt~~G~vy~wG 149 (449)
+++...+..++. .+ |.|+.|-....+++.. +.....-....|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 555666655553 35 8999997655443310 011111112367777764 34555667899999997
Q ss_pred CCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeee-
Q 013084 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV- 225 (449)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~- 225 (449)
........ ....+..........|..++...+ ..+.-..||.|+.|-... ...+..+
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~ 171 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--------------GAAVLTLG 171 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--------------TEEEEEEC
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--------------CCccEEEe
Confidence 65432111 000111111112345777766544 344456789999996432 1122222
Q ss_pred -ecCCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013084 226 -DLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 226 -~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (449)
......|..++.. ....+.-..+|.|+.|-.
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1123456666553 334445567888888864
No 76
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=60.91 E-value=94 Score=27.91 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013084 240 RHTISVSSSGRLYSYGW 256 (449)
Q Consensus 240 ~hs~~l~~~G~vy~~G~ 256 (449)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666555 789999995
No 77
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=57.72 E-value=1.4e+02 Score=29.04 Aligned_cols=219 Identities=20% Similarity=0.241 Sum_probs=104.9
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEE
Q 013084 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (449)
Q Consensus 72 ~i~~i~~g~--~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~ 147 (449)
.+..++... .+.+.-.++ +.|..|-.+ +++ ...+.. ....|..++... .+.+.-..|+.|+.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~d-g~v~~~~~~--~~~----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDD-KTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SEEEEEETT--CCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CEEEEEcCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 455555443 344444566 888888532 111 111111 123577776543 34455567889999
Q ss_pred EECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeee
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (449)
|-.+ +++ ...+.. ....|..++...+ ..+.-..|+.|+.|-.+ + ..+..+
T Consensus 412 ~~~~--~~~----------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~-------------~~~~~~ 463 (577)
T 2ymu_A 412 WNRN--GQL----------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--G-------------QLLQTL 463 (577)
T ss_dssp ECTT--CCE----------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--S-------------CEEEEE
T ss_pred EeCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--C-------------CEEEEE
Confidence 8422 111 111111 1235666655433 33344578888888521 1 111222
Q ss_pred ecCCCeEEEEEecCce--EEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC--ceEEEECCC
Q 013084 226 DLQREKMVMVACGWRH--TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDG 301 (449)
Q Consensus 226 ~~~~~~i~~i~~G~~h--s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~G 301 (449)
......|..++...+. .+.-..++.|+.|-. .+++ ...+.. ....|..++...+ +.+.-..||
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~--~~~~----------~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET--TSCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC--CCCE----------EEEEeC-CCCCEEEEEEcCCCCEEEEEECcC
Confidence 2223456666554332 233357788888853 2211 111111 1234777765433 334456788
Q ss_pred CEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcC--CCeEEEEeCCCCEEEE
Q 013084 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSW 358 (449)
Q Consensus 302 ~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~w 358 (449)
.|+.|-. .|+ +...-......|..++.. ..+.+.-..|+.|+.|
T Consensus 531 ~v~lwd~--~~~-----------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 531 TVKLWNR--NGQ-----------LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEECT--TSC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEEeC--CCC-----------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 9999942 121 111111123456655543 2333344567778777
No 78
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.84 E-value=1.1e+02 Score=27.22 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=11.5
Q ss_pred cEEEEEEcCCcEEEEEC
Q 013084 134 SHCLAVTVEGEVQSWGR 150 (449)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (449)
.|++++. +++||.+|-
T Consensus 152 ~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEECC
Confidence 4555554 789999985
No 79
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=56.43 E-value=1.2e+02 Score=27.79 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=111.6
Q ss_pred CCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCEE
Q 013084 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQV 93 (449)
Q Consensus 18 ~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~--~~~~~l~~~~g~v 93 (449)
...|..++.... ..+.-..||.|+.|- ..++ ....+.. ....|..++... .+.+....+ +.|
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i 173 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVE-NVT 173 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETT-CCE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecC-CeE
Confidence 337777776544 334445788999995 1111 1111111 123566666543 344445556 899
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeec----ccCCCCEEEEEe-cCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccce
Q 013084 94 YSWGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (449)
Q Consensus 94 ~~wG~n~~gqLG~~~~~~~~~p~~v~----~l~~~~i~~i~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (449)
+.|-......+..-..... ....+. ...+..+..+.. .....++.+.+|.|+.|-...... ..
T Consensus 174 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~ 241 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TG 241 (425)
T ss_dssp EEEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SE
T ss_pred EEEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------ee
Confidence 9996543211100000000 000000 000000222221 234566677889999996543211 01
Q ss_pred eeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCc-eEEEE
Q 013084 169 KLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR-HTISV 245 (449)
Q Consensus 169 ~v~~~~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-hs~~l 245 (449)
.+. .....|..++.. ....+.-..+|.|+.|-.... ..+..+......|..++.... ..++.
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~l~~~ 306 (425)
T 1r5m_A 242 KLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--------------NSQNCFYGHSQSIVSASWVGDDKVISC 306 (425)
T ss_dssp EEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--------------SCSEEECCCSSCEEEEEEETTTEEEEE
T ss_pred eec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------ccceEecCCCccEEEEEECCCCEEEEE
Confidence 111 112345555443 344555567899999953221 011111112335555555433 55556
Q ss_pred eCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC--CceEEEECCCCEEEEEcC
Q 013084 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWN 309 (449)
Q Consensus 246 ~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 309 (449)
..+|.|+.|-..... +..........|..++... ...++-..+|.|+.|-..
T Consensus 307 ~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ETTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred eCCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 678888888643211 1111111223466666543 344455678899999654
No 80
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.98 E-value=1.3e+02 Score=27.51 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=112.9
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCC--eeecCCCCCcEEEEEe-----cCCeeEEEEcCCCEEEEE
Q 013084 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYSESCMQVYSW 96 (449)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~i~~-----g~~~~~~l~~~~g~v~~w 96 (449)
++....+.+++++.|++|..-..+--..+. ...-.| ..+....+..|+.+.. ...+.+++|++ |.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEE
Confidence 455677889999999999876543222111 111222 2223334566777654 23356777887 988776
Q ss_pred eCCCCCCcCCCCCCCcccc-eeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecc
Q 013084 97 GWGDFGRLGHGNSSDLFTP-LPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (449)
Q Consensus 97 G~n~~gqLG~~~~~~~~~p-~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (449)
-..++-.... .. ..+....+..++.+ ..+.++.+++|++|+++-+-...--.+|...... ..+..-
T Consensus 125 ~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~ 193 (307)
T 1zi0_A 125 VLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLG 193 (307)
T ss_dssp EGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCC
T ss_pred EHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeC
Confidence 5433321110 01 11111123455543 3466789999999999999766544444322111 112222
Q ss_pred cCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe--cCceEEEEeCCC
Q 013084 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSG 249 (449)
Q Consensus 174 ~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G 249 (449)
++..|+.+..- ....+++|++|.+--.-..++-.-+.+.. -.+...+......++.+.. .....++++++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 45567776532 23467778888755543333221111110 0111111112234554433 456678999999
Q ss_pred CEEEEeCCCC
Q 013084 250 RLYSYGWSKY 259 (449)
Q Consensus 250 ~vy~~G~n~~ 259 (449)
.+.-+-.+.-
T Consensus 269 ~~ir~~~~~i 278 (307)
T 1zi0_A 269 TLVRTRVSEI 278 (307)
T ss_dssp CEEEEEGGGS
T ss_pred cEEEEecccc
Confidence 9887765444
No 81
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=54.94 E-value=1.3e+02 Score=27.60 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=93.2
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEecC---cEEEEEEcCCc
Q 013084 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACGD---SHCLAVTVEGE 144 (449)
Q Consensus 72 ~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l--~~~~i~~i~~G~---~h~~~lt~~G~ 144 (449)
.|..++...+ +.+.-..+ +.|..|-.... ..+..+ ....|..|+... ...+....||.
T Consensus 141 ~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred CEEEEEECCCCCEEEEEeCC-CeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 4666665543 33333456 89999953321 112221 123577776532 34556678899
Q ss_pred EEEEECCCCCcccCCCCCCcccceeee-cccCccEEEEEeCC--CeEE-EEecCCcEEEeeCCCCCCCCCCCCCCcccce
Q 013084 145 VQSWGRNQNGQLGLGTTEDSLVPQKLQ-AFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (449)
Q Consensus 145 vy~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~i~~G~--~h~~-~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 220 (449)
|..|-......+ ..+. ......+..++... .+.+ .-..++.|+.|-... +.
T Consensus 206 v~~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~--------------~~ 260 (357)
T 4g56_B 206 ILLWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--------------PD 260 (357)
T ss_dssp EEECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--------------GG
T ss_pred eEEEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--------------Cc
Confidence 999943221111 0011 11123466666542 2233 336789999995321 11
Q ss_pred eeeeeecCCCeEEEEEecC---ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC-Cce--
Q 013084 221 KVATVDLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHT-- 294 (449)
Q Consensus 221 ~v~~~~~~~~~i~~i~~G~---~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~-~h~-- 294 (449)
.+..+......|..++... ...+.-.+||.|+.|=... +++ ...+. -...|..|+... +..
T Consensus 261 ~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~----------~~~~~--H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV----------FRDLS--HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE----------EEECC--CSSCEEEEEECSSSTTEE
T ss_pred EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE----------eEECC--CCCCEEEEEEeCCCCCEE
Confidence 1222222234677766532 3334456889999994321 111 11111 123477777542 222
Q ss_pred EEEECCCCEEEEEcCCC
Q 013084 295 MAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 295 ~~lt~~G~vy~wG~n~~ 311 (449)
+.-..||.|+.|=....
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 23357899999975543
No 82
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=54.79 E-value=1.2e+02 Score=27.15 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=32.1
Q ss_pred EEEEEeCCCceEEEECCCC-EEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCC-CeEEEEeCCCC-EEEEeC
Q 013084 284 ISQISGGWRHTMAVTSDGK-LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-RHTLAVTERQN-VFSWGR 360 (449)
Q Consensus 284 i~~I~~G~~h~~~lt~~G~-vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-~h~~al~~~g~-v~~wG~ 360 (449)
+..+..+....++++.+|+ +|+-.... +.+ ..+.......+..+..+. -+.++++.+|+ +|.-..
T Consensus 266 ~~~~~~~~~~~~~~s~dg~~l~v~~~~~-~~v-----------~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 266 LAKVAAPESLAVLFNPARNEAYVTHRQA-GKV-----------SVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEECSSCCCEEEETTTTEEEEEETTT-TEE-----------EEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCceEEECCCCCEEEEEECCC-CeE-----------EEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 4444555556677777776 66654322 211 112222222223333332 25677888887 555443
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=53.68 E-value=1.4e+02 Score=27.80 Aligned_cols=119 Identities=10% Similarity=-0.007 Sum_probs=57.5
Q ss_pred CCCEEEEeeCC--CceEEEEcCCeEEEEeCC--CCCccCCCCCCCCcCC-eeecCC---CCCcEEEEEec----CCeeEE
Q 013084 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRG--EDGQLGHGDAEDRLSP-TQLSAL---DGHEIVSVTCG----ADHTTA 85 (449)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l~~~g~v~~wG~n--~~gqLG~~~~~~~~~P-~~v~~~---~~~~i~~i~~g----~~~~~~ 85 (449)
...|..|+.-. ...+.-..||.|..|--. ..+++-. .....+ ..+... ....+..+..- ....+.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 45677777654 334445588999999542 1111100 000000 011100 12234444421 334455
Q ss_pred EEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc-CCCCEEEEEecC--cEEEEEEcCCcEEEEECC
Q 013084 86 YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL-HSLRVKQIACGD--SHCLAVTVEGEVQSWGRN 151 (449)
Q Consensus 86 l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l-~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n 151 (449)
-..+ +.|+.|-...... ...+... ....|..++... .+.+.-+.||.|..|-..
T Consensus 188 ~~~d-~~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 188 LTNL-SRVIIFDIRTLER-----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp EETT-SEEEEEETTTCCE-----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EeCC-CeEEEEeCCCCee-----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 5566 8999996432110 1111110 123677777643 445556788999999653
No 84
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.79 E-value=1.2e+02 Score=26.76 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCCEEEEEec-CcEEEEEEcCCc-EEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCc-EE
Q 013084 122 HSLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-LY 198 (449)
Q Consensus 122 ~~~~i~~i~~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~-vy 198 (449)
.+-++.-..++ ....++++.+|+ ++.|+.... + ......|..+....+-.+.-.........+++.+|+ +|
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 34456555566 566777788887 566654221 0 011112222322333344433444555666766665 44
Q ss_pred EeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCC-CC-EEEEeCCCCCcCCCCCCCCceeeeee
Q 013084 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS-GR-LYSYGWSKYGQLGHGDFKDHLVPCQL 276 (449)
Q Consensus 199 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~-G~-vy~~G~n~~gqlG~~~~~~~~~p~~v 276 (449)
.++.. ..|.-+..+ ...++.-........++++.+ |+ +|.++.+...- .....|.-+
T Consensus 160 ~~~~~-------------~~~~~~~~~--~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~ 218 (276)
T 3no2_A 160 SVKLS-------------GTPFSSAFL--DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQL 218 (276)
T ss_dssp EEECS-------------SCCCEEEEC--TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEE
T ss_pred EEECC-------------CCccceeEc--CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccc
Confidence 44431 012222221 133444333334446677766 76 56776432110 011234444
Q ss_pred cccCCCcEEEEEe--C---------CCceEEEECCCCEEEEEcCCCCcccC
Q 013084 277 EALRESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVGV 316 (449)
Q Consensus 277 ~~~~~~~i~~I~~--G---------~~h~~~lt~~G~vy~wG~n~~GqLG~ 316 (449)
..+.+..+. |+. | ....+.++.+|+| +|=.+....+|.
T Consensus 219 ~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 219 FPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 444444343 333 2 2347778888887 676666666554
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=51.44 E-value=1.8e+02 Score=28.37 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=99.8
Q ss_pred CCCEEEEeeCCC---ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCC--CcEEEEEecCC---eeEEEEcC
Q 013084 18 FRPVLLISAGAS---HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGAD---HTTAYSES 89 (449)
Q Consensus 18 ~~~i~~i~~G~~---~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~i~~g~~---~~~~l~~~ 89 (449)
...|..++.... ..+.-..||.|..|-.... .....+..... ..|..++...+ +.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 345666665444 3444557888998853211 01111111111 15777776544 44445566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecc---cCCCCEEEEEe-cCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcc
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~---l~~~~i~~i~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (449)
|.|+.|-...... ...+.. .....|..++. ...+.+....||.|..|-......+
T Consensus 229 -g~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 229 -RKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp -CCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred -CeEEEEECCCCCE-----------eEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 9999996432111 111101 12335666665 4455666677899999965431110
Q ss_pred cceeeecc---cCccEEEEEe-CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCce
Q 013084 166 VPQKLQAF---EGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRH 241 (449)
Q Consensus 166 ~p~~v~~~---~~~~i~~i~~-G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h 241 (449)
..+... ....+..+.. .....++-..+|.|+.|-... ...+..+......|..++. ..
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 288 --QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH--------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp --EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred --EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 011100 0112333322 556667778899999995321 1222233333457888887 66
Q ss_pred EEEEeCCCCEEEEeCC
Q 013084 242 TISVSSSGRLYSYGWS 257 (449)
Q Consensus 242 s~~l~~~G~vy~~G~n 257 (449)
.+.-..+|.|+.|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 6666788999988643
No 86
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=48.83 E-value=1.5e+02 Score=26.56 Aligned_cols=17 Identities=6% Similarity=0.084 Sum_probs=12.4
Q ss_pred CceEEEEeCCCCEEEEeC
Q 013084 239 WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~ 256 (449)
..|++++. +++||.+|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 35666655 789999984
No 87
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=48.77 E-value=1.5e+02 Score=26.55 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe----cCceEEEEeCCCCEEEEeC
Q 013084 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 185 ~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----G~~hs~~l~~~G~vy~~G~ 256 (449)
..|++++. +++||++|-.... .......+...+........+.. -..|+++. .+++||.+|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG~~~~--------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAGKDLQ--------TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp CSCEEEEE-TTEEEEEEEEBTT--------TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred cccceEEE-CCEEEEEcCccCC--------CCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence 35666655 7899999832110 00111122222322333333321 23566665 5889999994
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=48.54 E-value=1.8e+02 Score=27.37 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCCEEEEeeCC--CceEEE-EcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCC-CCcEEEEEec---CCeeEEEEcCC
Q 013084 18 FRPVLLISAGA--SHSVAL-LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD-GHEIVSVTCG---ADHTTAYSESC 90 (449)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l-~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~-~~~i~~i~~g---~~~~~~l~~~~ 90 (449)
..+|..|+.-. ...+|. ..||.|.+|=.... ..+..+.... ...|..|+.. ....+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D- 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME- 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-
Confidence 45688888753 233433 58999999943211 1122222111 1346666653 2233333455
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEE--EEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCccc
Q 013084 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (449)
Q Consensus 91 g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l--~~~~i~~--i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (449)
|.|..|-... +. ...+... ....+.. ++......+.-+.+|.|+.|-.... ++
T Consensus 187 ~~v~iwd~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~---------- 243 (435)
T 4e54_B 187 GTTRLQDFKG-NI-----------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL---------- 243 (435)
T ss_dssp SCEEEEETTS-CE-----------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC----------
T ss_pred CEEEEeeccC-Cc-----------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee----------
Confidence 8888884321 00 0111110 1112222 3333445555567889998854211 00
Q ss_pred ceeeecccCccEEEEEeCC--CeEE-EEecCCcEEEeeC
Q 013084 167 PQKLQAFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGW 202 (449)
Q Consensus 167 p~~v~~~~~~~i~~i~~G~--~h~~-~Lt~~G~vy~~G~ 202 (449)
..+. .....|..|+... .+.+ .-..||.|..|-.
T Consensus 244 -~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 244 -WNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp -CCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred -EEEe-cccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 0011 1123577776542 2233 3357888888854
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=48.41 E-value=1.6e+02 Score=26.79 Aligned_cols=250 Identities=8% Similarity=0.002 Sum_probs=118.7
Q ss_pred CCCCEEEEeeC---CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC-----CeeEEEEc
Q 013084 17 PFRPVLLISAG---ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA-----DHTTAYSE 88 (449)
Q Consensus 17 ~~~~i~~i~~G---~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~-----~~~~~l~~ 88 (449)
....|..++.- ....+.-..||.|..|-..... +....... ..+..+.... ...++-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNFE-ETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEECS-SCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccCC-CceeeeEeecCCCCCcEEEEEcC
Confidence 45678888764 3455556679999999643211 11111111 2344444332 13444455
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc---EEEEEEcCCcEEEEECCCCCcc-cCCC---C
Q 013084 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQL-GLGT---T 161 (449)
Q Consensus 89 ~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gql-G~~~---~ 161 (449)
+ +.|+.|-...... ...+.. ....|..++.... ..+.-..||.|+.|-....... -.-. .
T Consensus 165 ~-~~v~~~d~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 G-PKVQLCDLKSGSC-----------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp S-SSEEEEESSSSCC-----------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred C-CeEEEEeCCCcce-----------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 6 8999996432211 111111 2335777766543 2456678999999975442211 0000 0
Q ss_pred CCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC
Q 013084 162 EDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (449)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 239 (449)
................|..++...+ +.+....+|.|+.|-......+-....... ........+.......
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-------NNSKKGLKFTVSCGCS 304 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-------CCCSSCCCCEECCSSS
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-------ccccccceeEEecCCC
Confidence 0000000000112235777766443 555667899999997544222111000000 0000011122222223
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC--ceEEEECCCCEEEEEcCCC
Q 013084 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~~ 311 (449)
...++...+|.|+.|-...... ...+.. ....|..++...+ +.+.-..||.|+.|=....
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ceEEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4455566788898886532111 111111 1233666665433 3444567899999976654
No 90
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.75 E-value=1.8e+02 Score=26.54 Aligned_cols=262 Identities=13% Similarity=0.064 Sum_probs=129.3
Q ss_pred CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEE--EEecCCeeEEEEcCCCEEEEEeCCCCCCcCC
Q 013084 29 SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVS--VTCGADHTTAYSESCMQVYSWGWGDFGRLGH 106 (449)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~--i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~ 106 (449)
...++++.+|.+---=-.++.....+. .-..-+..-++..+.. ++...++.+++|+. |++|.+-..+.-..+.
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNE-GKLYLINAYEIKDSSR 83 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETT-SEEEEEEGGGSCC---
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECC-CeEEEEEHHHCCCCCc
Confidence 346778899988654322221110000 0011111122233444 44566778888888 9999886543222111
Q ss_pred CCCCCcccceeecccCCCCEEEEEec-----CcEEEEEEcCCcEEEEECCCCCcc-cCCCCCCcccceeeecccCccEEE
Q 013084 107 GNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQNGQL-GLGTTEDSLVPQKLQAFEGVSIKM 180 (449)
Q Consensus 107 ~~~~~~~~p~~v~~l~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~n~~gql-G~~~~~~~~~p~~v~~~~~~~i~~ 180 (449)
... -......+....+.+|+.+... ..+.+++|++|.++-.--..+-.. +.+ . ..+..-++..++.
T Consensus 84 ~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-----~--~~i~L~~~d~lv~ 155 (312)
T 1suu_A 84 ASK-GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG-----V--IVIKLNDKDFVTS 155 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C-----E--ECBCCCTTCCEEE
T ss_pred cCC-CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc-----E--EEEecCCCCEEEE
Confidence 110 0111112333346678877654 456899999999998865443111 000 0 0111112334554
Q ss_pred EE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEe--cCceEEEEeCCCCEEEEeC
Q 013084 181 VA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 181 i~--~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G~vy~~G~ 256 (449)
+. .+..+.+++|++|.+.-+-..+.-..|..... .+...+. .++.|+.+.. ...+.++++++|.+..+-.
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 43 35677899999999998876554333332111 1111111 1345555543 3456788899998777766
Q ss_pred CCCCcCCCCCCCCceeeeeecccCCCcEEE--EEeCCCceEEEECCCCEEEEEcCCC
Q 013084 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYGWGWNKF 311 (449)
Q Consensus 257 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~h~~~lt~~G~vy~wG~n~~ 311 (449)
+.+-..+.+..-.. .. .+..-.+..+.. ........++++++|.+.-.-.+..
T Consensus 230 ~e~~~~~R~~kGv~-~~-~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 230 SKISELKRGATGYT-SY-KKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp GGSCBCCTTCCCEE-CS-CTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred HHhcccCCCCCCEE-ee-EccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 66544443321110 00 000001122332 2235566677788887765544443
No 91
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=43.97 E-value=1.8e+02 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013084 240 RHTISVSSSGRLYSYGW 256 (449)
Q Consensus 240 ~hs~~l~~~G~vy~~G~ 256 (449)
-+.++++.+|.||....
T Consensus 294 p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEEECTTSEEEEEES
T ss_pred eeEEEECCCCCEEEEEC
Confidence 35677888888887654
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=42.95 E-value=1.8e+02 Score=25.71 Aligned_cols=280 Identities=11% Similarity=0.049 Sum_probs=121.4
Q ss_pred CCCEEEEeeCCCc-eEEE--EcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCE
Q 013084 18 FRPVLLISAGASH-SVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQ 92 (449)
Q Consensus 18 ~~~i~~i~~G~~~-~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~ 92 (449)
...|..|+.-... .+++ ..||.|.+|--.... .....|...-..-...|..+....+ +.+.-..| +.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-~~ 109 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GT 109 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-cc
Confidence 3467888775332 2333 378999999643211 0111122111111234666665433 34444566 88
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceee
Q 013084 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (449)
Q Consensus 93 v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (449)
|+.|-...... ...... ....+..+ .......+.-..||.+..|-....... ...
T Consensus 110 i~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~-----------~~~ 166 (340)
T 4aow_A 110 LRLWDLTTGTT-----------TRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-----------TVQ 166 (340)
T ss_dssp EEEEETTTTEE-----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-----------EEC
T ss_pred ceEEeecccce-----------eeeecC-CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-----------EEE
Confidence 88886433211 111111 11122222 223344455567888888843221110 000
Q ss_pred ecccCccEEEEEe--CCCe--EEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceEEE
Q 013084 171 QAFEGVSIKMVAA--GAEH--SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTIS 244 (449)
Q Consensus 171 ~~~~~~~i~~i~~--G~~h--~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~ 244 (449)
.......+..++. .... .+.-..++.|+.|-... ...+..+......|..++... ...+.
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 0001123333332 2222 23334678888885321 111222222233566655433 23334
Q ss_pred EeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeC-CCceEEEECCCCEEEEEcCCCCcccCCCCCCcc
Q 013084 245 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 323 (449)
Q Consensus 245 l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~ 323 (449)
-..+|.|..|-.....++ ..+.. ...|..+... ..+.++...++.|+.|-....-.+..-...
T Consensus 233 ~s~Dg~i~iwd~~~~~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--- 296 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHL-----------YTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE--- 296 (340)
T ss_dssp EETTCEEEEEETTTTEEE-----------EEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred EeCCCeEEEEEeccCcee-----------eeecC--CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccc---
Confidence 457788888854322111 11111 1225544443 234455567888888864432111000000
Q ss_pred ccEEeecCCCCcEEEEEcCCC--eEEEEeCCCCEEEE
Q 013084 324 SPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (449)
Q Consensus 324 ~p~~v~~~~~~~v~~i~~G~~--h~~al~~~g~v~~w 358 (449)
............|..++...+ ..+.-..||.|+.|
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 000000111245666655433 33334578888888
No 93
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=41.47 E-value=1.8e+02 Score=25.49 Aligned_cols=268 Identities=15% Similarity=0.162 Sum_probs=124.0
Q ss_pred CCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013084 19 RPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~ 94 (449)
..|..++..... .+.-..||.|..|...... ....+.. ....|..++...+ +.+.-..+ +.|.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-~~i~ 90 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISG-HKLGISDVAWSSDSNLLVSASDD-KTLK 90 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhcc-CCCceEEEEEcCCCCEEEEECCC-CEEE
Confidence 456666655433 3333478888888643211 1111111 1234666665443 33444456 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeec
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (449)
.|-...... ...+.. ....|..++... ...+.-..||.|+.|-...... ...+.
T Consensus 91 vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~- 146 (312)
T 4ery_A 91 IWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP- 146 (312)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-
T ss_pred EEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec-
Confidence 996432111 011111 122455555433 4455567889999996432110 01111
Q ss_pred ccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeee-ecCCCeEEEEEe--cCceEEEEeC
Q 013084 173 FEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-DLQREKMVMVAC--GWRHTISVSS 247 (449)
Q Consensus 173 ~~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-~~~~~~i~~i~~--G~~hs~~l~~ 247 (449)
.....|..++... ...+.-..+|.|..|-.... ..+..+ ......+..++. ...+.++-..
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--------------QCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------CEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------ceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 1123466665443 34444567888988853221 011111 111223433333 2344555667
Q ss_pred CCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCC--cE-EEEE-eCCCceEEEECCCCEEEEEcCCCCcccCCCCCCcc
Q 013084 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRES--FI-SQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 323 (449)
Q Consensus 248 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~--~i-~~I~-~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~ 323 (449)
+|.|+.|-......+ ..+...... .+ .... .+....+.-.+||.|+.|-.....
T Consensus 213 d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----------- 270 (312)
T 4ery_A 213 DNTLKLWDYSKGKCL-----------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----------- 270 (312)
T ss_dssp TTEEEEEETTTTEEE-----------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC-----------
T ss_pred CCeEEEEECCCCcEE-----------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch-----------
Confidence 888888864321111 111100000 01 1111 122333334578899999754321
Q ss_pred ccEEeecCCCCcEEEEEcCCCeEEEEe----CCCCEEEEeC
Q 013084 324 SPVQVKFPLDQKVVQISCGWRHTLAVT----ERQNVFSWGR 360 (449)
Q Consensus 324 ~p~~v~~~~~~~v~~i~~G~~h~~al~----~~g~v~~wG~ 360 (449)
....-......|..+++.....++++ .|+.|..|=.
T Consensus 271 -~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 271 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 11111112345777776654433332 4788888854
No 94
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=41.47 E-value=2.2e+02 Score=26.48 Aligned_cols=145 Identities=13% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCEEE
Q 013084 19 RPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~--~~~~~l~~~~g~v~ 94 (449)
..|..++......++++ .||.|.+|-.... + ....+.... ..|..++... .+.+.-..| +.|.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~----------~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D-~~i~ 175 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETG-D----------FERTLKGHT-DSVQDISFDHSGKLLASCSAD-MTIK 175 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTC-C----------CCEEECCCS-SCEEEEEECTTSSEEEEEETT-SCCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c----------EEEEEeccC-CcEEEEEEcCCCCEEEEEeCC-CeEE
Confidence 35677776655444444 7889999964321 1 111222211 2466666543 233334455 8888
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceee
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~--~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (449)
.|-..... .+..+. ...|..++.. ..+.+.-..||.|..|-......+ ..+
T Consensus 176 iwd~~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-----------~~~ 230 (410)
T 1vyh_C 176 LWDFQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----------KTF 230 (410)
T ss_dssp EEETTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----------EEE
T ss_pred EEeCCCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEE
Confidence 88543211 111111 2356666654 356666778999999965331110 111
Q ss_pred ecccCccEEEEEeCCC--eEEEEecCCcEEEeeC
Q 013084 171 QAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (449)
Q Consensus 171 ~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy~~G~ 202 (449)
.. ....|..+....+ ..+.-..||.|..|-.
T Consensus 231 ~~-h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 231 TG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eC-CCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 11 1123555544333 3334457888888853
No 95
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=39.32 E-value=66 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.1
Q ss_pred CceEEEEeCCCCEEEEeC
Q 013084 239 WRHTISVSSSGRLYSYGW 256 (449)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~ 256 (449)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 7889999994
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=38.88 E-value=2e+02 Score=25.31 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=121.2
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--Cc-EEEEEEcCCcEE
Q 013084 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (449)
Q Consensus 72 ~i~~i~~g~--~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G--~~-h~~~lt~~G~vy 146 (449)
.|..++... .+.+.-..+ |.|+.|-..... ....+..+. .....|..++.. .. +.+.-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 466665543 344444566 999999643221 000111111 123356666543 44 666777899999
Q ss_pred EEEC-CCCCcccCCCCCCcccceeeec-ccCccEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeee
Q 013084 147 SWGR-NQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (449)
Q Consensus 147 ~wG~-n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~i~~G-~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 223 (449)
.|-. .. +++ ..+.. .....|..++.. ....+.-..+|.|+.|-......- . .......+.
T Consensus 83 ~wd~~~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~--~~~~~~~~~ 145 (342)
T 1yfq_A 83 KVDLIGS-PSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG---V--IAVKNLNSN 145 (342)
T ss_dssp EECSSSS-SSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB---C--EEEEESCSS
T ss_pred EEEeccC-Cce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc---c--ccccCCeee
Confidence 9954 22 111 11111 012346665543 556666678999999953210000 0 000000011
Q ss_pred eeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC---CceEEEECC
Q 013084 224 TVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSD 300 (449)
Q Consensus 224 ~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~h~~~lt~~ 300 (449)
.+. ....|..++......++.+.+|.|+.|-....+.. ............|..++... ...++-..+
T Consensus 146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence 111 12356677776666666778899999975431110 01111111223366666543 445555678
Q ss_pred CCEEEEEcCCCCcccCCCCCCccccEEeecCC--------CCcEEEEEcC--CCeEEEEeCCCCEEEEeCC
Q 013084 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--------DQKVVQISCG--WRHTLAVTERQNVFSWGRG 361 (449)
Q Consensus 301 G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~--------~~~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (449)
|.+..|=....+. .........+.... ...|..++.. ....+.-..+|.|+.|=..
T Consensus 216 g~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 216 GRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp SEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 9999987655310 00000111111110 1256666553 3344455678999999643
No 97
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.49 E-value=2.4e+02 Score=25.90 Aligned_cols=225 Identities=9% Similarity=-0.021 Sum_probs=114.2
Q ss_pred EEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCC--eeecCCCCCcEEEEEec-----CCeeEEEEcCCCEEEE
Q 013084 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYS 95 (449)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~i~~g-----~~~~~~l~~~~g~v~~ 95 (449)
.++....+.+++++.|++|..-..+--..+. ...-.| ..+....+..|+.+..- ..+.+++|++ |.+.-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~iKr 120 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKK 120 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCC-CeEEE
Confidence 3556778889999999999876543222211 111111 12222245567765443 2357778887 98887
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecc
Q 013084 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (449)
Q Consensus 96 wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (449)
.-..++-...... --..+....+..++.+ ..+.++.+++|++|+++-+-.+.--..|...... ..+..-
T Consensus 121 t~l~e~~~~~r~~-----G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV----~~i~L~ 191 (323)
T 1wp5_A 121 TELKHYKAQRYSK-----PLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV----KGMNLK 191 (323)
T ss_dssp EEGGGGCCSCCSS-----CEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE----ECCCCC
T ss_pred eEHHHhhhccccC-----ceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE----EEEEeC
Confidence 7544432211000 0011111123345443 3467889999999999999876644444322111 111112
Q ss_pred cCccEEEEEe--CCC-eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEE--EecCceEEEEeCC
Q 013084 174 EGVSIKMVAA--GAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSS 248 (449)
Q Consensus 174 ~~~~i~~i~~--G~~-h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~ 248 (449)
++..|+.+.. ... ..+.++++|...-.-...+-.-+.+... ...+. .+...+..++.+ ..+....++++++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~---~~~~~~~~l~~~~~v~~~~~i~~it~~ 267 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILR---ELKANPHRISGFVVAQDSDTIYLQTEK 267 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSC---CCSSSCCCEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECee---ecCCCCceEEEEEEeCCCCeEEEEeCC
Confidence 3445665532 123 5777788876554433332222111111 01111 011112234432 3456778899999
Q ss_pred CCEEEEeCCCCCcCCC
Q 013084 249 GRLYSYGWSKYGQLGH 264 (449)
Q Consensus 249 G~vy~~G~n~~gqlG~ 264 (449)
|++..+--+.....|.
T Consensus 268 g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 268 SFIETIKVGDIRFSDR 283 (323)
T ss_dssp SCEEEEEGGGSCBCCS
T ss_pred CeEEEEEhhhcCccCc
Confidence 9988776555544443
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=38.07 E-value=3.5e+02 Score=27.79 Aligned_cols=241 Identities=11% Similarity=0.062 Sum_probs=117.2
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec----CcEEEEEEcCC
Q 013084 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (449)
Q Consensus 72 ~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l--~~~~i~~i~~G----~~h~~~lt~~G 143 (449)
.|..++...+ +.+.-..+ |.|..|-.... ....+..+ ....|..++.. ....+....||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3555554332 33333456 99999953210 11122222 13367788764 45566778899
Q ss_pred cEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccc
Q 013084 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (449)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 219 (449)
.|+.|-.... ...+..........|..++... ...+.-..+|.|+.|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 0001111111234577776654 35666678899999964332110 11
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcE
Q 013084 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (449)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G---------------~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 284 (449)
.. +......|..++.. ....+.-..+|.|+.|-..... ....+..........|
T Consensus 139 ~~---~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 139 II---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 207 (753)
T ss_dssp EE---EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred eE---eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcE
Confidence 11 11112345555443 3445556678989888542211 1111111111123347
Q ss_pred EEEEeCCC-----ceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEE--cCCCeEEEEeCCCCEEE
Q 013084 285 SQISGGWR-----HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS--CGWRHTLAVTERQNVFS 357 (449)
Q Consensus 285 ~~I~~G~~-----h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~--~G~~h~~al~~~g~v~~ 357 (449)
..++.... ..+.-..+|.|+.|-....... .. ............|..++ ......+.-..||.|+.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~----~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP----WK---KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC----CB---CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc----ce---eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 77776543 4445567899999976542110 00 00000000112333333 33334444568899999
Q ss_pred EeCCC
Q 013084 358 WGRGT 362 (449)
Q Consensus 358 wG~n~ 362 (449)
|-.+.
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 96553
No 99
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.04 E-value=2.1e+02 Score=25.20 Aligned_cols=158 Identities=11% Similarity=0.049 Sum_probs=83.6
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECCCCCcccCCC
Q 013084 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (449)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (449)
+++++++ |.+-.-....++. ..+..-.+..+..+ +...++.+++|+.|++|.+-....... .
T Consensus 5 ~v~lT~~-G~iKr~~~~~~~~------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r-- 68 (256)
T 1zvt_A 5 TIVLSQM-GWVRSAKGHDIDA------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R-- 68 (256)
T ss_dssp EEEEETT-SEEEEEESSCCCS------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S--
T ss_pred EEEEeCC-CEEEEeeCCcCCc------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--
Confidence 4567777 8776554322211 11111223445544 445678999999999999865442111 1
Q ss_pred CCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEE-E-
Q 013084 161 TEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-A- 236 (449)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-~- 236 (449)
..-......+...++.+|+.+... ..+.+++|++|.+.-.-..++-... ..-..+..+. .+..++.+ .
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~-~~d~lv~~~~~ 140 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLP-ENAHVMPPVVI 140 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCC-TTCCBCCCEEC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEEC-CCCEEEEEEEe
Confidence 000111112333346678887663 4457788999988876544431110 0011111111 12233332 1
Q ss_pred -ecCceEEEEeCCCCEEEEeCCCCCcCCC
Q 013084 237 -CGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (449)
Q Consensus 237 -~G~~hs~~l~~~G~vy~~G~n~~gqlG~ 264 (449)
-+..+.++++++|++..+-.++.-.+|.
T Consensus 141 ~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 141 EDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred cCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2567889999999998887665544443
No 100
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=37.55 E-value=2.4e+02 Score=25.68 Aligned_cols=230 Identities=12% Similarity=0.083 Sum_probs=111.6
Q ss_pred CCEEEEeeCCC-ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEEE
Q 013084 19 RPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYS 95 (449)
Q Consensus 19 ~~i~~i~~G~~-~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~~ 95 (449)
..|..++.... ..+.-..||.|..|=-.....+ ........--...|..|+...+ +.+.-..| +.|..
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-~~i~i 153 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-ICIKV 153 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCSSCEEEEEECTTSSEEEEEETT-SCEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeeccccCCCCCEEEEEECCCCCEEEEEeCC-CeEEE
Confidence 34777765443 3344458899999954321110 0000000001124666665443 33334456 88999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEecCc---EEEEEEcCCcEEEEECCCCCcccCCCCCCcccceee
Q 013084 96 WGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (449)
Q Consensus 96 wG~n~~gqLG~~~~~~~~~p~~v~~l~--~~~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (449)
|-.... ..+..+. ...|..++.... ..+.-..||.|..|-......+ ..+
T Consensus 154 wd~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~ 208 (344)
T 4gqb_B 154 WDLAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----------SQI 208 (344)
T ss_dssp EETTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----------EEC
T ss_pred EECCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee-----------eee
Confidence 953321 2222222 236777776432 3344567899999954321110 011
Q ss_pred e-cccCccEEEEEeCC--CeE-EEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC---ceEE
Q 013084 171 Q-AFEGVSIKMVAAGA--EHS-VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW---RHTI 243 (449)
Q Consensus 171 ~-~~~~~~i~~i~~G~--~h~-~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~---~hs~ 243 (449)
. ......+..++... .+. +.-..||.|..|-... ...+..+......|..++... .+.+
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--------------~~~~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--------------TSCVLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--------------CcEEEEEcCCCCCEEEEEEccCCCeEEE
Confidence 1 11223455555432 223 3346789999995321 111222222234677776542 3344
Q ss_pred EEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCC-CceEEE--ECCCCEEEEEcC
Q 013084 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHTMAV--TSDGKLYGWGWN 309 (449)
Q Consensus 244 ~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~-~h~~~l--t~~G~vy~wG~n 309 (449)
.-..||.|+.|-... +++ ..... -...|..++... ...++. ..||.|..|=..
T Consensus 275 sgs~D~~i~vwd~~~-~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSL-SEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEETTSCEEEECTTC-CEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEeCCCeEEEEECCC-CcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 456899999994321 211 11111 123477777543 223332 468999999543
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=37.44 E-value=2.2e+02 Score=25.26 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=92.8
Q ss_pred cEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CcEEEEEEcCCcEEE
Q 013084 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (449)
Q Consensus 72 ~i~~i~~g~~~--~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G--~~h~~~lt~~G~vy~ 147 (449)
.|..++...+. .+.-..+ |.|+.|-..... ....+.. ....|..++.. ..+.+....||.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGE-----------RLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESS-SCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCch-----------hhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 57777765433 3333456 899999533211 1111111 23357777664 345666778999999
Q ss_pred EECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC--CeEEEEecC-----CcEEEeeCCCCCCCCCCCCCCcccce
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAED-----GELYGWGWGRYGNLGLGDRNDRLIPE 220 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~Lt~~-----G~vy~~G~n~~gqlg~~~~~~~~~p~ 220 (449)
|-......+ ..+. ....|..++... ...++...+ |.|+.|-.........-.. ....
T Consensus 101 wd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~---~~~~ 164 (369)
T 3zwl_B 101 WDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK---VSEE 164 (369)
T ss_dssp EETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE---ECSS
T ss_pred EECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc---cccc
Confidence 965332111 1111 223455554433 334444455 8888886443221110000 0000
Q ss_pred eeeeeec--CCCeEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC--ce
Q 013084 221 KVATVDL--QREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HT 294 (449)
Q Consensus 221 ~v~~~~~--~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~ 294 (449)
.+..+.. ....+..++.. ..+.++-..+|.|+.|-....+ .+..........|..++...+ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEE
Confidence 1111110 11134444332 3345555678888888643211 111111112234666665433 33
Q ss_pred EEEECCCCEEEEEcC
Q 013084 295 MAVTSDGKLYGWGWN 309 (449)
Q Consensus 295 ~~lt~~G~vy~wG~n 309 (449)
+.-..+|.|+.|-..
T Consensus 234 ~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 234 ITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEecCCceEEEEECC
Confidence 444568888888643
No 102
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.99 E-value=2.4e+02 Score=25.55 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=108.8
Q ss_pred EEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEe-----CCCeEEEEecCCcEEEeeCC
Q 013084 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA-----GAEHSVAVAEDGELYGWGWG 203 (449)
Q Consensus 129 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~h~~~Lt~~G~vy~~G~n 203 (449)
++...++.+++|+.|++|.+-...-...+..... ......+...++++|+.+.. ...+.+++|++|.+.-.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG-RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC-EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC-eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 4566788999999999999976553333321111 01111222234667777654 23357788999988766433
Q ss_pred CCCCCCCCCCCCcccceeeeeeecCCCeEEEE--EecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCC
Q 013084 204 RYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE 281 (449)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~ 281 (449)
++-... . .......+.. +..++.+ ..+..+.+++|++|+++.+-..+--.+|...... .-+..-.+
T Consensus 128 e~~~~~------r-~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~~ 195 (307)
T 1zi0_A 128 EFNRLR------T-AGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGEG 195 (307)
T ss_dssp GGTTCC------T-TCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCTT
T ss_pred Hhhccc------c-CCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCCC
Confidence 321111 0 0111111111 2344443 2356788999999999988765544444322111 11222234
Q ss_pred CcEEEEEeC--CCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEe-ecC-CCCcEEEEEc--CCCeEEEEeCCCCE
Q 013084 282 SFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQV-KFP-LDQKVVQISC--GWRHTLAVTERQNV 355 (449)
Q Consensus 282 ~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v-~~~-~~~~v~~i~~--G~~h~~al~~~g~v 355 (449)
..|+.+..- ....+++|++|.+--.-..+|-.-+.+.. -+.. ++. .+..++.+.. .....++++++|.+
T Consensus 196 d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 196 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 556666432 23456677777644443333221111100 0111 111 1134444332 45667888899988
Q ss_pred EEEeCCC
Q 013084 356 FSWGRGT 362 (449)
Q Consensus 356 ~~wG~n~ 362 (449)
.-.--++
T Consensus 271 ir~~~~~ 277 (307)
T 1zi0_A 271 VRTRVSE 277 (307)
T ss_dssp EEEEGGG
T ss_pred EEEeccc
Confidence 8665444
No 103
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.95 E-value=2.7e+02 Score=26.12 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=110.0
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCC--eeecCCCCCcEEEEEec-----CCeeEEEEcCCCEEEEE
Q 013084 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSW 96 (449)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~i~~g-----~~~~~~l~~~~g~v~~w 96 (449)
++.+..+.+++++.|++|-.--..--..+. ...-.| ..++.-.+.+|+.+..- ..+.+++|++ |.+.-.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt 128 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKT 128 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEe
Confidence 344556678899999999775433211111 111111 12222345678877653 3467888888 988877
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeeccc
Q 013084 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE 174 (449)
Q Consensus 97 G~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 174 (449)
-...+-... ... -..+..-.+..++.+ ..+..+.+++|++|++.-+-.+.--.+|...... ..+..-+
T Consensus 129 ~l~e~~~~~---~~G---~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV----~~i~L~~ 198 (370)
T 3l6v_A 129 PLSEFAFRL---ARG---KIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV----RGIRLAK 198 (370)
T ss_dssp EGGGGCSCC---TTC---EESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCT
T ss_pred EHHHhhccc---CCc---eEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe----eeEEeCC
Confidence 654443211 000 011111123344443 3466789999999999988655444444332211 0111111
Q ss_pred CccEEEEEe-------------------------------------CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcc
Q 013084 175 GVSIKMVAA-------------------------------------GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL 217 (449)
Q Consensus 175 ~~~i~~i~~-------------------------------------G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~ 217 (449)
+..|+.+.. ...+.+.+|++|..--.-..++-..+.+......
T Consensus 199 ~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~ 278 (370)
T 3l6v_A 199 GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIG 278 (370)
T ss_dssp TCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEES
T ss_pred CCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEE
Confidence 223333221 2345777788876555544444333332221110
Q ss_pred cceeeeeeecCCCeEEEE--EecCceEEEEeCCCCEEEEeCCCCCcCCC
Q 013084 218 IPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (449)
Q Consensus 218 ~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~G~vy~~G~n~~gqlG~ 264 (449)
. .+......++.+ .......+++++.|++.-+--+.....|.
T Consensus 279 ~-----k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR 322 (370)
T 3l6v_A 279 I-----QTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGR 322 (370)
T ss_dssp S-----CCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCS
T ss_pred E-----EecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCC
Confidence 0 011111233332 23446788999999998876555444443
No 104
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=34.63 E-value=2.7e+02 Score=25.48 Aligned_cols=225 Identities=10% Similarity=-0.023 Sum_probs=106.4
Q ss_pred CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCC
Q 013084 29 SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGH 106 (449)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~ 106 (449)
...+.-..||.|..|-... ..+......-...|..++...+ +.+.-..+ +.|+.|-......
T Consensus 110 ~~l~~~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~--- 173 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNF------------NLQREIDQAHVSEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSN--- 173 (420)
T ss_dssp CEEEEEETTSCEEEECTTS------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCC---
T ss_pred CEEEEEECCCCEEEEeCCC------------cceeeecccccCccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcC---
Confidence 3344445778888884321 1111111111235777776433 44445566 9999996443211
Q ss_pred CCCCCcccceeecccCCCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEE--
Q 013084 107 GNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-- 182 (449)
Q Consensus 107 ~~~~~~~~p~~v~~l~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~-- 182 (449)
...+.. ....|..++.. ....+....||.|..|-......+..-... ......|..++
T Consensus 174 --------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 174 --------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK---------ENPHDGVNSIALF 235 (420)
T ss_dssp --------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT---------TBTTCCEEEEEEE
T ss_pred --------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC---------CCCCCCccEEEEe
Confidence 111221 12356666654 345566678899999965432111000000 00011122221
Q ss_pred -------------------e--CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCc-
Q 013084 183 -------------------A--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR- 240 (449)
Q Consensus 183 -------------------~--G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~- 240 (449)
. ...+.++-..+|.|+.|-..... .+..+ .......|..++....
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~--~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQL--PSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEE--CCTTSSCEEEEEECSSC
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEc--ccccCCCceeEEEeCCC
Confidence 1 12234445678888888532210 11111 1111235666665443
Q ss_pred --eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCceEEE-ECCCCEEEEEcCC
Q 013084 241 --HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAV-TSDGKLYGWGWNK 310 (449)
Q Consensus 241 --hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~l-t~~G~vy~wG~n~ 310 (449)
..+.-..+|.|+.|-.....++ ...+.......|..+.......++. ..||.|..|-...
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECP----------VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSC----------SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCc----------hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 5555668899999965332210 1111111233355555544444433 4588899997654
No 105
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=34.32 E-value=3.9e+02 Score=27.23 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=94.8
Q ss_pred CCEEEEeeC--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013084 19 RPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~ 94 (449)
..|..++.. ....+.-..||.|.+|-...... ...+... ...|..++...+ +.+....+ |.|.
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 122 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFEAH-PDYIRSIAVHPTKPYVLSGSDD-LTVK 122 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------EEEEECC-SSCEEEEEECSSSSEEEEEETT-SEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEecC-CCCEEEEEEeCCCCEEEEEcCC-CEEE
Confidence 345555443 33344455788888886443211 1112111 134666665433 34444556 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC---cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeee
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (449)
.|-..... ............|..++... ...+..+.+|.|+.|-..... ....+.
T Consensus 123 vw~~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~ 180 (814)
T 3mkq_A 123 LWNWENNW-----------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLT 180 (814)
T ss_dssp EEEGGGTS-----------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEE
T ss_pred EEECCCCc-----------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEe
Confidence 99643211 11111111233577777643 345556778999999653211 011111
Q ss_pred cccCccEEEEEe----CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCc--eEEEE
Q 013084 172 AFEGVSIKMVAA----GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISV 245 (449)
Q Consensus 172 ~~~~~~i~~i~~----G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~~l 245 (449)
......+..++. .....+.-..+|.|+.|-... ...+..+......|..++.... ..+.-
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--------------KSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 111123444433 344555566789999995321 1122222222345666655433 44555
Q ss_pred eCCCCEEEEeCC
Q 013084 246 SSSGRLYSYGWS 257 (449)
Q Consensus 246 ~~~G~vy~~G~n 257 (449)
..+|.|+.|-..
T Consensus 247 ~~dg~v~vwd~~ 258 (814)
T 3mkq_A 247 SEDGTLKIWNSS 258 (814)
T ss_dssp ETTSCEEEEETT
T ss_pred eCCCeEEEEECC
Confidence 678999999654
No 106
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=33.81 E-value=2.6e+02 Score=24.96 Aligned_cols=252 Identities=8% Similarity=-0.060 Sum_probs=114.5
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEE
Q 013084 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (449)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g--~~~~~~l~~~~g~v 93 (449)
...|..++..... .++-..|+.|+.|-.... + ......+... ...|..++.. ..+.+....+ |.|
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~--------~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d-g~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-K--------WVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD-RNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-E--------EEEEEEEECC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-c--------EEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC-CeE
Confidence 3455566554332 223337888888853221 0 0011112111 2346666554 3344444556 888
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeee
Q 013084 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (449)
Q Consensus 94 ~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (449)
+.|-.... ...+.....-....|..++.. ....+..+.+|.|+.|-...... ......+.
T Consensus 77 ~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~ 138 (372)
T 1k8k_C 77 YVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIK 138 (372)
T ss_dssp EEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEEC
T ss_pred EEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeee
Confidence 88853211 011111111123356666654 34555667789998885433210 00111111
Q ss_pred cccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCC----CCcccceeeeeeecCCCeEEEEEecC--ceEE
Q 013084 172 AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDR----NDRLIPEKVATVDLQREKMVMVACGW--RHTI 243 (449)
Q Consensus 172 ~~~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~----~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~ 243 (449)
......|..++... ...+.-..+|.|+.|-......-..... ........+..+......|..++... .+.+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 11133566666543 3444556789999997432110000000 00011122222222233566665533 3455
Q ss_pred EEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeC-CCceEEEECCCCEEEEEcCC
Q 013084 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNK 310 (449)
Q Consensus 244 ~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~ 310 (449)
....+|.|+.|-...... ...+. .....|..++.. ....++...+|.++.|-...
T Consensus 219 ~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 556788888885432111 11111 112235555543 23455556788888887544
No 107
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=33.29 E-value=2.8e+02 Score=25.24 Aligned_cols=244 Identities=10% Similarity=0.066 Sum_probs=112.4
Q ss_pred CCCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEec---CCeeEEEEcCCC
Q 013084 17 PFRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (449)
Q Consensus 17 ~~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g---~~~~~~l~~~~g 91 (449)
....|..++..... .+.-..||.|..|-...... .......+... ...|..++.. ....+.-..+ |
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d-g 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSNH-SSSVKTVKFNAKQDNVLASGGNN-G 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCCS-SSCCCEEEECSSSTTBEEEECSS-S
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccCC-ccceEEEEEcCCCCCEEEEEcCC-C
Confidence 34567777764433 33334788999885432100 00011111111 1245555554 3334444455 8
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeec--ccCCCCEEEEEecC---cEEEEEEcCCcEEEEECCCCCcccCCCCCCccc
Q 013084 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (449)
Q Consensus 92 ~v~~wG~n~~gqLG~~~~~~~~~p~~v~--~l~~~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (449)
.|+.|-........ ....+..+. ......|..++... ...+.-..+|.|+.|-......
T Consensus 137 ~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------- 200 (416)
T 2pm9_A 137 EIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----------- 200 (416)
T ss_dssp CEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------
T ss_pred eEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------
Confidence 99999644322100 000111110 01123566666543 3444446789999996533110
Q ss_pred ceeeeccc-----CccEEEEEeCCC---eEEEEecCC---cEEEeeCCCCCCCCCCCCCCcccceeeeeee-cCCCeEEE
Q 013084 167 PQKLQAFE-----GVSIKMVAAGAE---HSVAVAEDG---ELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-LQREKMVM 234 (449)
Q Consensus 167 p~~v~~~~-----~~~i~~i~~G~~---h~~~Lt~~G---~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~~~~~i~~ 234 (449)
...+.... ...|..++...+ ..+.-..+| .|+.|-.....+ +.. .+. .....|..
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~--~~~~~~~~~v~~ 267 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQ--TLNQGHQKGILS 267 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSB--CCCSCCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcE--EeecCccCceeE
Confidence 11111110 345666665543 344445566 888886433111 100 011 11234556
Q ss_pred EEe---cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC---ceEEEECCCCEEEEEc
Q 013084 235 VAC---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGKLYGWGW 308 (449)
Q Consensus 235 i~~---G~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~ 308 (449)
++. .....+.-..+|.|+.|-...... ...+.. ....|..++.... ..+.-..+|.|..|-.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----------LSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCE-----------EEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----------ceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 554 344556667789999985432111 111111 1122444554433 2333345788888876
Q ss_pred CC
Q 013084 309 NK 310 (449)
Q Consensus 309 n~ 310 (449)
..
T Consensus 336 ~~ 337 (416)
T 2pm9_A 336 QN 337 (416)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 108
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=32.99 E-value=1.9e+02 Score=23.10 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=61.1
Q ss_pred cCccEEEEEeCC-CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEec-CceEEEEeCCCCE
Q 013084 174 EGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG-WRHTISVSSSGRL 251 (449)
Q Consensus 174 ~~~~i~~i~~G~-~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-~~hs~~l~~~G~v 251 (449)
+....+++.|-. .+.+-+..||.|-.-.. ..+...--.+.... ..++.|.|- ..+.+++..+|+|
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~----------~~~~~s~lei~sv~---~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRD----------RSDTHIQFQISPEG---NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEEE---TTEEEEEETTTTEEEEECTTSBE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecC----------CCCCceEEEEEEcc---CCEEEEEEecCCEEEeECCCCCE
Confidence 345688898876 67777888999985432 11122222232322 357788875 5678899999999
Q ss_pred EEEeCCCCCcCCCCCCCCceeeeeec--ccCCCcEEEEEeCCCceEEEECCCCEEE
Q 013084 252 YSYGWSKYGQLGHGDFKDHLVPCQLE--ALRESFISQISGGWRHTMAVTSDGKLYG 305 (449)
Q Consensus 252 y~~G~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~I~~G~~h~~~lt~~G~vy~ 305 (449)
|.--. . .+.....++. ......|+.+..| ..++++.+|++|+
T Consensus 95 ~Gs~~--~--------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 95 DGTRD--R--------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp EEECC--T--------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred eeccc--C--------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 97422 1 1111111211 1122223333333 4788999999985
No 109
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=30.24 E-value=3.1e+02 Score=24.78 Aligned_cols=194 Identities=8% Similarity=0.015 Sum_probs=99.9
Q ss_pred CCCCEEEEeeCCCc---eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecC-CCCCcEEEEEecC---CeeEEEEcC
Q 013084 17 PFRPVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGA---DHTTAYSES 89 (449)
Q Consensus 17 ~~~~i~~i~~G~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-~~~~~i~~i~~g~---~~~~~l~~~ 89 (449)
-...|..++..... .+.-..||.|.+|-.... .....+.. -....|..++... ...+....+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34567777765543 344447888888854321 11122221 1224677777654 334444556
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcc
Q 013084 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (449)
Q Consensus 90 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~--~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (449)
+.|..|-... . ....+.... ...|..++.. ....+.-+.||.|+.|-... +
T Consensus 141 -~~i~iwd~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~---------- 195 (383)
T 3ei3_B 141 -GATTLRDFSG-S-----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H---------- 195 (383)
T ss_dssp -TEEEEEETTS-C-----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C----------
T ss_pred -CEEEEEECCC-C-----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C----------
Confidence 9999996431 0 111111111 1235555543 45566667889999996521 0
Q ss_pred cceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC---
Q 013084 166 VPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--- 239 (449)
Q Consensus 166 ~p~~v~~~~~~~i~~i~~G~~---h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--- 239 (449)
....+.. ....|..++...+ ..+.-..||.|+.|-....... ...+..+. ....|..++...
T Consensus 196 ~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~~-~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 196 EIFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEMP-HEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEEE-CSSCEEEEEECTTTS
T ss_pred EEEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEec-CCCceEEEEEcCCCC
Confidence 0111111 2235777765544 3444567889999964321100 11111111 234666666543
Q ss_pred ceEEEEeCCCCEEEEeCCC
Q 013084 240 RHTISVSSSGRLYSYGWSK 258 (449)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~ 258 (449)
.+.+.-..+|.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4455556788999987543
No 110
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.05 E-value=3.2e+02 Score=24.94 Aligned_cols=225 Identities=8% Similarity=-0.018 Sum_probs=111.8
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CcEEEEEEcCCcEEEEEC
Q 013084 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (449)
Q Consensus 76 i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~ 150 (449)
++...++.+++|+. |++|..-..+--..+.... -......+....+.+|+.+..- ..+.+++|++|.+.-.--
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDL-GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCC-CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 45567778888888 9999987554322221110 1111111222345677776443 235888999998887754
Q ss_pred CCCCcccCCCCCCcccceeeecccCccEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecC
Q 013084 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (449)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~ 228 (449)
..+-.... .. --..+..-++..++. +..+.++.+++|++|+++-+-.++.-.+|... ...+...+. .
T Consensus 124 ~e~~~~~r---~~--G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a-----~GV~~i~L~-~ 192 (323)
T 1wp5_A 124 KHYKAQRY---SK--PLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA-----AGVKGMNLK-E 192 (323)
T ss_dssp GGGCCSCC---SS--CEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC-----CCEECCCCC-T
T ss_pred HHhhhccc---cC--ceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC-----cCEEEEEeC-C
Confidence 33221110 00 000111112233433 33467889999999999988766544443311 112221121 2
Q ss_pred CCeEEEEEec--Cc-eEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEE--EEeCCCceEEEECCCCE
Q 013084 229 REKMVMVACG--WR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKL 303 (449)
Q Consensus 229 ~~~i~~i~~G--~~-hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~h~~~lt~~G~v 303 (449)
++.|+.+..- .. ..+.++++|.....-...+-.-+.+.. -...+...+. .+..+.. +..+.+..++++++|++
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ 270 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeE
Confidence 3456655431 22 567778887654433333222221110 0111111110 1112332 23456778899999998
Q ss_pred EEEEcCCCCccc
Q 013084 304 YGWGWNKFGQVG 315 (449)
Q Consensus 304 y~wG~n~~GqLG 315 (449)
.-.-.++.-..|
T Consensus 271 ir~~~~~i~~~~ 282 (323)
T 1wp5_A 271 ETIKVGDIRFSD 282 (323)
T ss_dssp EEEEGGGSCBCC
T ss_pred EEEEhhhcCccC
Confidence 877665544444
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=27.68 E-value=3e+02 Score=23.78 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCC--CCCcEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCC
Q 013084 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGR 103 (449)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~--~~~~i~~i~~g~~~--~~~l~~~~g~v~~wG~n~~gq 103 (449)
....+++-.|+.|+.|=... |+ ...+-.+ ....|..|+...+. .+.-..| |.|..|=......
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t-g~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-g~v~iw~~~~~~~ 101 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKR 101 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEE
T ss_pred CCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECC-CcEEEeecCCcee
Confidence 34467777899999995332 11 1111111 12347777665443 3334466 9999995432111
Q ss_pred cCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEE-
Q 013084 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA- 182 (449)
Q Consensus 104 LG~~~~~~~~~p~~v~~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~- 182 (449)
..........+..++......+.-..++.+..|-....... . ..+.. ....+..++
T Consensus 102 ------------~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~---------~-~~~~~-~~~~~~~~~~ 158 (318)
T 4ggc_A 102 ------------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH---------V-ATLSG-HSQEVCGLRW 158 (318)
T ss_dssp ------------EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE---------E-EEEEC-CSSCEEEEEE
T ss_pred ------------EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee---------E-EEEcC-ccCceEEEEE
Confidence 11111112355666666666666677777777754332110 0 01111 111233333
Q ss_pred -eCCCeEEEEecCCcEEEeeC
Q 013084 183 -AGAEHSVAVAEDGELYGWGW 202 (449)
Q Consensus 183 -~G~~h~~~Lt~~G~vy~~G~ 202 (449)
....+.+.-..||.|..|-.
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCEEEEEecCcceeEEEC
Confidence 33345555667899999954
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=27.68 E-value=3e+02 Score=23.85 Aligned_cols=272 Identities=10% Similarity=-0.015 Sum_probs=0.0
Q ss_pred EEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec----CcEEEEEEcCCcEEEEE
Q 013084 74 VSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWG 149 (449)
Q Consensus 74 ~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G----~~h~~~lt~~G~vy~wG 149 (449)
..+.....+.+.-..+ |.|..|-.......- .+..........|..++.. ....+....||.|..|-
T Consensus 17 ~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSD-QHIKVFKLDKDTSNW--------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp EEECSSSSEEEEEETT-SEEEEEEECSSSCCE--------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEeeCC-CeEEEEECCCCCCcc--------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Q ss_pred CCCCCcccCCCCCCcccceeeecccCccEEEEEeC----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeee
Q 013084 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (449)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (449)
....... .......+..........|..++.. ....+.-..+|.|+.|-......+.. ...+..+...
T Consensus 88 ~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~ 159 (351)
T 3f3f_A 88 EDPDQEE---CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS-----WTLTSEMKVL 159 (351)
T ss_dssp ECTTSCT---TSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC-----CEEEEEEESC
T ss_pred cCCCccc---ccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc-----cccccccccc
Q ss_pred ecCCCeEEEEEecCceEEEEeCC---CCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCCc------eEE
Q 013084 226 DLQREKMVMVACGWRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH------TMA 296 (449)
Q Consensus 226 ~~~~~~i~~i~~G~~hs~~l~~~---G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h------~~~ 296 (449)
. ....-....-.++....+ ++.+..|......+-.........+.....-....|..++..... .+.
T Consensus 160 ~----~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 160 S----IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp S----CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred c----cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Q ss_pred EECCCCEEEEEcCC----------------------------------CCcccCCCCCCccccEEeecCCCCcEEEEEcC
Q 013084 297 VTSDGKLYGWGWNK----------------------------------FGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG 342 (449)
Q Consensus 297 lt~~G~vy~wG~n~----------------------------------~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G 342 (449)
-..||.|..|-... ....-.-.......+..........|..++..
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Q ss_pred CCeEEEEe--CCCCEEEEeCCCCCCC
Q 013084 343 WRHTLAVT--ERQNVFSWGRGTNGQL 366 (449)
Q Consensus 343 ~~h~~al~--~~g~v~~wG~n~~gqL 366 (449)
....++++ .||.|..|=.+...++
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred CCCCEEEEecCCCcEEEEecCcCcch
No 113
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=27.24 E-value=4.3e+02 Score=25.46 Aligned_cols=221 Identities=19% Similarity=0.220 Sum_probs=105.0
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEEcCCcEEE
Q 013084 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (449)
Q Consensus 72 ~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~h~~~lt~~G~vy~ 147 (449)
.|..++...+ ..+....+ +.|+.|=.+ ++ ....+.. ....|..++... ...+....||.|..
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d-~~i~~w~~~--~~----------~~~~~~~-h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDD-KTVKLWNRN--GQ----------LLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEETT--SC----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEEeCC-CEEEEEeCC--Cc----------EEEEEec-CCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 4666665433 33334455 888888422 11 0111111 123566666543 34555667888988
Q ss_pred EECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeee
Q 013084 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (449)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (449)
|-.+.. ....+.. ....|..++... .+.+.-.++|.+..|-.+ ++ .+..+
T Consensus 330 w~~~~~------------~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~-------------~~~~~ 381 (577)
T 2ymu_A 330 WNRNGQ------------HLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ-------------LLQTL 381 (577)
T ss_dssp EETTSC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CC-------------EEEEE
T ss_pred EeCCCC------------eeEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CC-------------EEEEe
Confidence 854321 0111111 123455555433 344555678888888421 11 11222
Q ss_pred ecCCCeEEEEEecC--ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeeecccCCCcEEEEEeCCC--ceEEEECCC
Q 013084 226 DLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDG 301 (449)
Q Consensus 226 ~~~~~~i~~i~~G~--~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~G 301 (449)
......|..++... .+.+.-..++.|+.|-. .+++ ...+.. ....|..++...+ ..+.-..++
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~--~~~~----------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL----------LQTLTG-HSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT--TCCE----------EEEEEC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCE----------EEEecC-CCCCeEEEEECCCCCEEEEEcCCC
Confidence 22234565555432 33444557788888842 1211 111111 1233666655433 233345788
Q ss_pred CEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCeE--EEEeCCCCEEEEeC
Q 013084 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHT--LAVTERQNVFSWGR 360 (449)
Q Consensus 302 ~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~--~al~~~g~v~~wG~ 360 (449)
.|..|-.+ +++ ...+. .....|..++...+.. +.-..|+.|+.|-.
T Consensus 449 ~v~~w~~~--~~~----------~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 449 TVKLWNRN--GQL----------LQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEEEETT--SCE----------EEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEEECC--CCE----------EEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 88888532 111 01111 2234566665543332 23347888999863
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=26.88 E-value=6.4e+02 Score=27.37 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCEEEEeeCCCce--EEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013084 19 RPVLLISAGASHS--VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (449)
Q Consensus 19 ~~i~~i~~G~~~~--~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~ 94 (449)
..|..++...... +.-..||.|..|-...... ...+... ...|..++...+ +.+....+ +.|.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d-~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------LLDIKAH-EDEVLCCAFSSDDSYIATCSAD-KKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCC-SSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------EEEeccC-CCCEEEEEEecCCCEEEEEeCC-CeEE
Confidence 4555555543332 2334677777775432211 1111111 234666665433 44444566 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--c--EEEEEEcCCcEEEEECCCCCcccCCCCCCcccceee
Q 013084 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--S--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (449)
Q Consensus 95 ~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G~--~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (449)
.|-...... ...+. .....|..++... . ..+.-..||.|..|-...... ...+
T Consensus 683 vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------~~~~ 739 (1249)
T 3sfz_A 683 IWDSATGKL-----------VHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------RNTM 739 (1249)
T ss_dssp EEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------EEEE
T ss_pred EEECCCCce-----------EEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------hhee
Confidence 996432111 01111 1233566666543 3 233446789999996543211 0111
Q ss_pred ecccCccEEEEEeCC--CeEEEEecCCcEEEeeC
Q 013084 171 QAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (449)
Q Consensus 171 ~~~~~~~i~~i~~G~--~h~~~Lt~~G~vy~~G~ 202 (449)
.. ....|..++... ...+.-..+|.|..|-.
T Consensus 740 ~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 740 FG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp CC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred cC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 11 122455554433 34555667889999853
No 115
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=26.48 E-value=3.6e+02 Score=24.41 Aligned_cols=242 Identities=8% Similarity=0.021 Sum_probs=111.8
Q ss_pred CcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CcEEEEEEcCCcE
Q 013084 71 HEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEV 145 (449)
Q Consensus 71 ~~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---~~h~~~lt~~G~v 145 (449)
..|..++...+ +.+.-..+ |.|..|-...... + ..+..........|..++.. ....+.-..||.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~-~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDN-GSLELYSTNEANN-A-------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESS-SCEEEECCSSTTS-C-------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccC-CeEEEeecccccc-c-------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 35666665433 33333456 8999995433100 0 00111111112356666654 4455566678999
Q ss_pred EEEECCCCCcccCCCCCCcccceeee--cccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCcccce
Q 013084 146 QSWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (449)
Q Consensus 146 y~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~i~~G~~---h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 220 (449)
+.|-......... ...+..+. ......|..++...+ ..+.-..+|.|+.|-... ..
T Consensus 139 ~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--------------~~ 199 (416)
T 2pm9_A 139 FIWDMNKCTESPS-----NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA--------------KK 199 (416)
T ss_dssp EBCBTTTTSSCTT-----TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT--------------TE
T ss_pred EEEECCCCccccc-----cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC--------------CC
Confidence 9996543220000 00011110 011224555555433 334446788999996322 11
Q ss_pred eeeeeecC------CCeEEEEEecCc---eEEEEeCCC---CEEEEeCCCCCcCCCCCCCCceeeeeecc-cCCCcEEEE
Q 013084 221 KVATVDLQ------REKMVMVACGWR---HTISVSSSG---RLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQI 287 (449)
Q Consensus 221 ~v~~~~~~------~~~i~~i~~G~~---hs~~l~~~G---~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~I 287 (449)
.+..+... ...|..++.... ..+.-..+| .|+.|-.....+ +..... .....|..+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEE
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEE
Confidence 12222211 234555555432 333444555 777775433211 111111 112336666
Q ss_pred Ee---CCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCC---eEEEEeCCCCEEEEeCC
Q 013084 288 SG---GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR---HTLAVTERQNVFSWGRG 361 (449)
Q Consensus 288 ~~---G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~---h~~al~~~g~v~~wG~n 361 (449)
+. .....+.-..+|.|+.|-....- +..........|..++.... ..+.-..||.|..|--.
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAE------------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCC------------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCc------------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 65 34455556678999999543311 11111111234444544432 33334468889999765
Q ss_pred CC
Q 013084 362 TN 363 (449)
Q Consensus 362 ~~ 363 (449)
..
T Consensus 337 ~~ 338 (416)
T 2pm9_A 337 NL 338 (416)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 116
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=26.00 E-value=2.4e+02 Score=22.07 Aligned_cols=106 Identities=12% Similarity=0.133 Sum_probs=53.1
Q ss_pred EEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE-EeCCCeEEEEecCCcEEEeeCCC
Q 013084 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAVAEDGELYGWGWGR 204 (449)
Q Consensus 126 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i-~~G~~h~~~Lt~~G~vy~~G~n~ 204 (449)
+.--.|...+.+-+..||+|-.-.... +...--.+..... .++.| ..-..+.+++..+|+||.--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~----------~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS----------DPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC----------CCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 334456667778888899998653321 1111111221111 24444 334456788899999996421
Q ss_pred CCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013084 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (449)
Q Consensus 205 ~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (449)
..+.....++........-+..+..| ..++++.+|++|.-
T Consensus 75 --------~s~ec~flE~~~~~~g~v~ikg~~sg--~YLamnk~G~lygs 114 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEGNGEVLLRSTETG--QFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEETTEEEEEETTTC--CEEEECTTSBEEEE
T ss_pred --------CCCCceeEEEEeecCcEEEEEeccCC--eEEEECCCCcCcCC
Confidence 11111112222222111122223334 47899999999973
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=25.93 E-value=3.4e+02 Score=23.89 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=83.2
Q ss_pred CCCCCEEEEeeCCC-----ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEc
Q 013084 16 APFRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSE 88 (449)
Q Consensus 16 ~~~~~i~~i~~G~~-----~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~ 88 (449)
.....|..|+.... ..+.-..||.|..|-....++ .....+... ...|..++...+ +.+....
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQMH-TGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEEC-SSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEeccc-cCCEEEEEECcCCCEEEEEcC
Confidence 44567888887765 233345788999996543211 111222211 235777766433 4455556
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cC--cEEEEEEcCCcEEEEECCCCCcccCCCCCCc
Q 013084 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (449)
Q Consensus 89 ~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~--G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (449)
+ |.|..|-..... ...+.. ....|..++. .. .+.+.-..||.|+.|-......
T Consensus 107 d-g~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------- 163 (368)
T 3mmy_A 107 D-KTAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--------- 163 (368)
T ss_dssp T-SEEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC---------
T ss_pred C-CcEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE---------
Confidence 6 999999643221 111111 2336777765 33 3355556789999995432110
Q ss_pred ccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCC
Q 013084 165 LVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203 (449)
Q Consensus 165 ~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n 203 (449)
...+.. ...+..+..-....++.+.++.++.|-..
T Consensus 164 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 --MMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --SEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --EEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 111111 12455666666777888889999999643
No 118
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.81 E-value=4e+02 Score=24.26 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=34.4
Q ss_pred cEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC--ceEEEEeCCCCE
Q 013084 177 SIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRL 251 (449)
Q Consensus 177 ~i~~i~~G---~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~~~G~v 251 (449)
.|..++.. ....+.-..||.|..|-....++ .+..+......|..++... .+.+.-..||.|
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 46666542 34445556799999996432111 0111111122344444332 334444578888
Q ss_pred EEEeCCC
Q 013084 252 YSYGWSK 258 (449)
Q Consensus 252 y~~G~n~ 258 (449)
..|-...
T Consensus 274 ~lwd~~~ 280 (380)
T 3iz6_a 274 RLFDMRT 280 (380)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 8886543
No 119
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.76 E-value=4.4e+02 Score=24.78 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCCEEEEeeCCCceEEEEcCC------eEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEE
Q 013084 2 AEASAASEAASTTAAPFRPVLLISAGASHSVALLSGN------IVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVS 75 (449)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~l~~~g------~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~ 75 (449)
+.+.+++.+-....+....|..+..=..+.+++.+-+ .|++.-.... ..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------~v~~~ 74 (386)
T 3sjl_D 17 AAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------RVIGM 74 (386)
T ss_dssp HHHHHHHHHHHHTCCCCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------EEEEE
T ss_pred hhhhhhhhhhccCCCcccceeeccCCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------eEEEE
Q ss_pred EEecCCeeEEEEcCCCEEEEEe-----------CCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---------CcE
Q 013084 76 VTCGADHTTAYSESCMQVYSWG-----------WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---------DSH 135 (449)
Q Consensus 76 i~~g~~~~~~l~~~~g~v~~wG-----------~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G---------~~h 135 (449)
|..|..-.++++.|...||+.- .| .-..+..-....+..|..+ .-+
T Consensus 75 I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~--------------~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 75 IDGGFLPNPVVADDGSFIAHASTVFSRIARGERTD--------------YVEVFDPVTLLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEE--------------EEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EECCCCCcEEECCCCCEEEEEcccccccccCCCCC--------------EEEEEECCCCeEEEEEECCCccccccCCCCc
Q ss_pred EEEEEcCCc-EEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC
Q 013084 136 CLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN 214 (449)
Q Consensus 136 ~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg~~~~~ 214 (449)
.++++.||+ +|.......+.+..-+......-..+..... ..-...|..-.++++.||++........+.+ .....
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~~ 217 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITHT 217 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEEC
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEeec
Q ss_pred CcccceeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCC-cCCCCCCCCceeeeeecccCCCcEEEEE-----
Q 013084 215 DRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYG-QLGHGDFKDHLVPCQLEALRESFISQIS----- 288 (449)
Q Consensus 215 ~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~g-qlG~~~~~~~~~p~~v~~~~~~~i~~I~----- 288 (449)
....+....... ......... +.++++.+|+||..-..... ++ +..+.
T Consensus 218 ~~~~~~~~~~~~----~~~~~~~dG-~~~~vs~~g~V~v~d~~~~~~~v---------------------~~~~~~~~~~ 271 (386)
T 3sjl_D 218 EVFHPEDEFLIN----HPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKF---------------------LPAVEALTEA 271 (386)
T ss_dssp CCCSCTTSCBCS----CCEEETTTT-EEEEEBTTSEEEEEECTTSSCEE---------------------CCCEESSCHH
T ss_pred ceeccccccccc----cceeEcCCC-cEEEEeCCCEEEEEECCCCccee---------------------ecceeccccc
Q ss_pred -------eCCCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCCe-EEEEeCCCC--EEE-
Q 013084 289 -------GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRH-TLAVTERQN--VFS- 357 (449)
Q Consensus 289 -------~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h-~~al~~~g~--v~~- 357 (449)
.+....++++.+++-.---.+..++ -.+...-..-..+.....+.+..|..|..- .++++.|++ +|.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~--~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCT--TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccc--cccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEE
Q ss_pred -EeCCC
Q 013084 358 -WGRGT 362 (449)
Q Consensus 358 -wG~n~ 362 (449)
|+.|.
T Consensus 350 n~~~~~ 355 (386)
T 3sjl_D 350 STGDKT 355 (386)
T ss_dssp ETTTTE
T ss_pred cCCCCe
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=24.37 E-value=3.9e+02 Score=24.04 Aligned_cols=230 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013084 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (449)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~ 109 (449)
+.+++..+|+.+.......+.+-.=+......-..+.......-..++....+.++...+++.|+.| +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~-----------d~ 103 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-----------DT 103 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ET
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEE-----------EC
Q ss_pred CCcccceeecccCCCCEEEEEecCcEE-EEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCCeE
Q 013084 110 SDLFTPLPIKALHSLRVKQIACGDSHC-LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHS 188 (449)
Q Consensus 110 ~~~~~p~~v~~l~~~~i~~i~~G~~h~-~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~ 188 (449)
........+.......-..++....+. +.-..++.|+.| +.........+..-....-..+.-...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI-----------NTVTKAVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE-----------ECCCCcEEEEEecCCCcceEEECCCCCEE
Q ss_pred -EEEecCCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecCc--eEEEEeCCCCEEEEeCC--CCCcCC
Q 013084 189 -VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVSSSGRLYSYGWS--KYGQLG 263 (449)
Q Consensus 189 -~~Lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~~l~~~G~vy~~G~n--~~gqlG 263 (449)
+.-..+|.|+.| +....++........ ..+++..+|+....+.. ..+.+-
T Consensus 173 ~~~~~~~~~v~~~-------------------------d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 173 YVANFDSMSISVI-------------------------DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEETTTTEEEEE-------------------------ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEeCCCCEEEEE-------------------------ECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Q ss_pred CCCCCCceeeeeecccCCCcEEEEEeCCCce-EEEECCCCEEEE
Q 013084 264 HGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 306 (449)
Q Consensus 264 ~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~-~~lt~~G~vy~w 306 (449)
.-+.........+.......-..++.-..+. +....++.|+.|
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
No 121
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=24.17 E-value=4e+02 Score=24.03 Aligned_cols=185 Identities=13% Similarity=0.081 Sum_probs=87.8
Q ss_pred CEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCC----CeEEEEecCCcEE
Q 013084 125 RVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELY 198 (449)
Q Consensus 125 ~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~h~~~Lt~~G~vy 198 (449)
.|..++.. ....+.-+.||.|..|-...... ...+.. ....|..++... ...+.-..||.|+
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------LQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------EEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 45555543 34566667899999996533110 011111 122455544322 3444556799999
Q ss_pred EeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCceeeeee
Q 013084 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (449)
Q Consensus 199 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 276 (449)
.|-... ...+..+......|..++.. ....+.-..+|.|..|-.....++ ...
T Consensus 224 ~wd~~~--------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~-----------~~~ 278 (354)
T 2pbi_B 224 VWDMRS--------------GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-----------AIY 278 (354)
T ss_dssp EEETTT--------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEE
T ss_pred EEECCC--------------CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEE
Confidence 996322 11122222223456666553 233444457888888864321111 001
Q ss_pred ccc-CCCcEEEEEeC--CCceEEEECCCCEEEEEcCCCCcccCCCCCCccccEEeecCCCCcEEEEEcCCC--eEEEEeC
Q 013084 277 EAL-RESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTE 351 (449)
Q Consensus 277 ~~~-~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--h~~al~~ 351 (449)
... ....+..++.. ....+.-..+|.|+.|-..... +...-......|..++...+ +.+.-..
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS------------RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc------------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 000 01124444433 3333444578889998643211 11111122345665554432 3333446
Q ss_pred CCCEEEE
Q 013084 352 RQNVFSW 358 (449)
Q Consensus 352 ~g~v~~w 358 (449)
||.|..|
T Consensus 347 D~~v~vW 353 (354)
T 2pbi_B 347 DHTLRVW 353 (354)
T ss_dssp TSEEEEE
T ss_pred CCCEEec
Confidence 7777777
No 122
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=23.13 E-value=3.7e+02 Score=23.26 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.9
Q ss_pred ceEEEECCCCEEEEE
Q 013084 293 HTMAVTSDGKLYGWG 307 (449)
Q Consensus 293 h~~~lt~~G~vy~wG 307 (449)
..++++.+|++|+-.
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 467888889988876
No 123
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.92 E-value=4.7e+02 Score=24.42 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=67.5
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CcEEEEEEcCCcEEEEEC
Q 013084 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (449)
Q Consensus 76 i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~l~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~ 150 (449)
++.+.++.+++|+. |++|.+-...--..|.... -......+..-.+.+|+.+..- ..+.+++|++|.+.-.--
T Consensus 53 ~~~t~d~ll~fT~~-G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSS-GKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCC-CeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 34455567778888 9999886443322221110 0101111222346788887653 347889999998887764
Q ss_pred CCCCcccCCCCCCcccceeeecccCccEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCC
Q 013084 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLG 209 (449)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~h~~~Lt~~G~vy~~G~n~~gqlg 209 (449)
..+.... ..-..-..+. ++..++. +..+.++.+++|++|++.-+-...--.+|
T Consensus 131 ~e~~~~~----~~G~~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 131 SEFAFRL----ARGKIAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGGCSCC----TTCEESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HHhhccc----CCceEEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 4332211 0000000111 1223333 34567789999999999887655443333
No 124
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Probab=22.02 E-value=2.5e+02 Score=22.47 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=36.2
Q ss_pred CCCCCCCEEEEeeCC-CceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecC-CeeEEEEcCCC
Q 013084 14 TAAPFRPVLLISAGA-SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA-DHTTAYSESCM 91 (449)
Q Consensus 14 ~~~~~~~i~~i~~G~-~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~-~~~~~l~~~~g 91 (449)
+.....+..++.|-. .+.+-+..||+|-.-... .+...-..+..... .++.|..-. ...+++.+. |
T Consensus 13 ~~~~~~r~~rLY~r~~g~~LqI~~dG~V~Gt~~~----------~~~~s~l~i~sv~~-G~V~I~gv~s~~YLcMn~~-G 80 (146)
T 1bfg_A 13 PPGHFKDPKRLYCKNGGFFLRIHPDGRVDGVREK----------SDPHIKLQLQAEER-GVVSIKGVSANRYLAMKED-G 80 (146)
T ss_dssp ------CCEEEEETTTTEEEEECTTSCEEEECCT----------TCGGGCEEEEECST-TEEEEEETTTTEEEEECTT-S
T ss_pred CCCCcCccEEEEEcCCCEEEEECCCCeEEeecCC----------CCCceEEEEEeccC-CEEEEEEcccCcEEEEcCC-C
Confidence 334667888899976 677888899998743321 11122222222221 244454333 344555556 9
Q ss_pred EEEE
Q 013084 92 QVYS 95 (449)
Q Consensus 92 ~v~~ 95 (449)
+||.
T Consensus 81 ~Lyg 84 (146)
T 1bfg_A 81 RLLA 84 (146)
T ss_dssp CEEE
T ss_pred CEec
Confidence 9996
No 125
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=22.01 E-value=4.8e+02 Score=24.20 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=35.8
Q ss_pred CCEEEEEecC---cEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEE
Q 013084 124 LRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELY 198 (449)
Q Consensus 124 ~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--h~~~Lt~~G~vy 198 (449)
..|..|+... ...+.-..||.|..|-......... .. ........|..++...+ +.+.-..||.|+
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~--------~~-~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS--------FL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC--------CS-BCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccce--------EE-EeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence 3677777642 2333446789999886433211100 00 00001224555554433 334446789999
Q ss_pred EeeCC
Q 013084 199 GWGWG 203 (449)
Q Consensus 199 ~~G~n 203 (449)
.|-..
T Consensus 322 iwd~~ 326 (435)
T 4e54_B 322 VYSAS 326 (435)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99643
No 126
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.76 E-value=5.2e+02 Score=24.12 Aligned_cols=215 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCC-CcCC
Q 013084 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFG-RLGH 106 (449)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~g~~--~~~~l~~~~g~v~~wG~n~~g-qLG~ 106 (449)
+.++++.+|+||+-...... .++-.+....+..+..... + +++..+ ++...|.....+ .+-.
T Consensus 134 ~~la~d~~g~lyv~d~~~~~-------------I~~id~~~g~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPR-------------VRLISVDDNKVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp EEEEECSTTEEEEEETTTTE-------------EEEEETTTTEEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEE
T ss_pred eEEEEeCCCCEEEEecCCCc-------------EEEEECCCCEEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEE
Q ss_pred CCCCCcccceee----c-ccCCCCEEEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEE
Q 013084 107 GNSSDLFTPLPI----K-ALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (449)
Q Consensus 107 ~~~~~~~~p~~v----~-~l~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (449)
-+......+..+ . ......=..+.....+.++.+.+++||.| .+....+..+
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~-----------------------d~~~~~~~~~ 255 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRF-----------------------NVKTQEVTLI 255 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEE-----------------------ETTTCCEEEE
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEE-----------------------ECCCCCEEEE
Q ss_pred -------EeCCC-e-EEEEec-CCcEEEeeCCCCCCCCCCCCCCcccceeeeeeecCCCeEEEEEecC------------
Q 013084 182 -------AAGAE-H-SVAVAE-DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW------------ 239 (449)
Q Consensus 182 -------~~G~~-h-~~~Lt~-~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~------------ 239 (449)
..+.. + .++++. +|+||+.-.... .|..+...+. +..++...
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~---------------~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS---------------SVYKITPDGE-CEWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT---------------EEEEECTTCC-EEEEEECTTCCSCBCEEGGG
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCC---------------EEEEEecCCC-EEEEEeCCCCCCcCCCcccc
Q ss_pred -----ceEEEEeCCCCEEEEeC-CCCCcCCCCCCCCceeeeeecccCCCcEEEEEeC-----------------CCceEE
Q 013084 240 -----RHTISVSSSGRLYSYGW-SKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-----------------WRHTMA 296 (449)
Q Consensus 240 -----~hs~~l~~~G~vy~~G~-n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G-----------------~~h~~~ 296 (449)
-..++++.+|+||..-. ..+- ...-.+.+..+..++.. .=+.++
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~-------------I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYC-------------LRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCE-------------EEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCE-------------EEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Q ss_pred EECCCCEEEEEcCCC
Q 013084 297 VTSDGKLYGWGWNKF 311 (449)
Q Consensus 297 lt~~G~vy~wG~n~~ 311 (449)
++.+|.||+...+.+
T Consensus 387 vd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGK 401 (409)
T ss_dssp ECSSSEEEEEESTTC
T ss_pred EcCCCCEEEEECCCC
No 127
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.75 E-value=7.1e+02 Score=25.67 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred EEEEecCcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCC
Q 013084 127 KQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGR 204 (449)
Q Consensus 127 ~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~Lt~~G~vy~~G~n~ 204 (449)
...+...++.+++|+.|++|..-...-... ...-......+..-++++|+.+... ..+.++.|++|.+.-.-...
T Consensus 508 ~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~---~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~ 584 (716)
T 1zvu_A 508 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 584 (716)
T ss_dssp EECCCSSSCEEEEETTSEEEEECTTTSCCC---C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EEEecCCCEEEEEecCCcEEEEEeeecccc---cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH
Q ss_pred CCCCCCCCCCCcccceeeeeeecCCCeEEEEEe--cCceEEEEeCCCCEEEEeCCCCCcCCC
Q 013084 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGH 264 (449)
Q Consensus 205 ~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G~vy~~G~n~~gqlG~ 264 (449)
+ ............+.....-+.-..+ +..+.++++++|++..|-.+.--.+|.
T Consensus 585 ~-------~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 585 L-------VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp G-------CCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred h-------cccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
No 128
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.43 E-value=4.3e+02 Score=23.08 Aligned_cols=156 Identities=10% Similarity=0.002 Sum_probs=82.1
Q ss_pred eEEEEcCCeEEEEeCCCCCccCCCCCCCCcCCeeecCCCCCcEEE--EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCC
Q 013084 31 SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVS--VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGN 108 (449)
Q Consensus 31 ~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~--i~~g~~~~~~l~~~~g~v~~wG~n~~gqLG~~~ 108 (449)
.++++.+|.+-.---...+ +..+..-++..++. .....++.+++|+. |++|..-..+. ....
T Consensus 5 ~v~lT~~G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~-Gr~~~~~~~el---p~~r 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDST-GRSYAIDPITL---PSAR 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETT-SEEEEECGGGS---CCSS
T ss_pred EEEEeCCCEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCC-CeEEEEEHHHC---CCcC
Confidence 4668888887544322211 11111122233444 33456678888888 99998865442 1111
Q ss_pred CCCcccceeecccCCCCEEEEEec--CcEEEEEEcCCcEEEEECCCCCcccCCCCCCcccceeeecc-cCccEEEE--E-
Q 013084 109 SSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF-EGVSIKMV--A- 182 (449)
Q Consensus 109 ~~~~~~p~~v~~l~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~i--~- 182 (449)
.........+....+.+|+.+... ..+.+++|++|.+.-.-...+-....+ -..+..+ ++..++.+ .
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~-------G~~~i~L~~~d~lv~~~~~~ 141 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA-------GKALITLPENAHVMPPVVIE 141 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT-------CEECBCCCTTCCBCCCEECC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC-------ceEEEEECCCCEEEEEEEec
Confidence 111111112333346688888663 455788899998887754433111000 0011111 12233332 2
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCC
Q 013084 183 AGAEHSVAVAEDGELYGWGWGRYGNLG 209 (449)
Q Consensus 183 ~G~~h~~~Lt~~G~vy~~G~n~~gqlg 209 (449)
.+.++.+++|++|++.-+-.++.-.+|
T Consensus 142 ~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 142 DASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred CCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 367789999999999988766544444
Done!