Query 013085
Match_columns 449
No_of_seqs 81 out of 83
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05918 API5: Apoptosis inhib 100.0 4E-141 9E-146 1119.7 37.2 436 10-448 1-445 (556)
2 KOG2213 Apoptosis inhibitor 5/ 100.0 3E-117 6E-122 893.3 33.3 386 8-426 1-387 (460)
3 PF10508 Proteasom_PSMB: Prote 97.9 0.0062 1.3E-07 65.7 25.5 316 31-368 75-430 (503)
4 PF01602 Adaptin_N: Adaptin N 97.7 0.0049 1.1E-07 64.9 20.4 280 41-363 89-375 (526)
5 PF12717 Cnd1: non-SMC mitotic 97.4 0.006 1.3E-07 56.8 14.7 149 45-201 2-159 (178)
6 PTZ00429 beta-adaptin; Provisi 97.3 0.081 1.7E-06 60.2 25.4 103 34-138 70-173 (746)
7 PF01602 Adaptin_N: Adaptin N 96.7 0.18 3.8E-06 53.2 20.1 252 32-310 42-298 (526)
8 PF13646 HEAT_2: HEAT repeats; 96.4 0.013 2.9E-07 46.9 7.3 66 42-119 11-76 (88)
9 PF12717 Cnd1: non-SMC mitotic 96.4 0.12 2.7E-06 48.0 14.7 123 81-214 1-135 (178)
10 PRK09687 putative lyase; Provi 96.3 0.22 4.8E-06 50.0 16.5 131 30-169 52-184 (280)
11 KOG1020 Sister chromatid cohes 96.0 0.82 1.8E-05 55.2 21.5 106 29-135 852-961 (1692)
12 cd00020 ARM Armadillo/beta-cat 96.0 0.032 6.9E-07 46.1 7.5 98 67-169 6-116 (120)
13 PF10363 DUF2435: Protein of u 95.9 0.026 5.6E-07 48.1 6.8 83 67-149 2-87 (92)
14 PF13646 HEAT_2: HEAT repeats; 95.8 0.066 1.4E-06 42.8 8.5 84 70-166 1-85 (88)
15 PRK09687 putative lyase; Provi 95.6 0.18 3.9E-06 50.7 12.3 127 31-169 89-217 (280)
16 KOG2213 Apoptosis inhibitor 5/ 95.5 0.0099 2.2E-07 62.5 3.0 39 385-435 330-368 (460)
17 PTZ00429 beta-adaptin; Provisi 95.4 5.4 0.00012 45.8 24.7 59 43-101 152-212 (746)
18 KOG1061 Vesicle coat complex A 94.5 1.4 3.1E-05 49.9 16.6 114 34-149 51-166 (734)
19 PF01603 B56: Protein phosphat 94.2 0.87 1.9E-05 48.2 13.7 185 105-352 133-321 (409)
20 cd00020 ARM Armadillo/beta-cat 94.2 0.3 6.5E-06 40.2 8.3 89 43-131 19-117 (120)
21 PF14500 MMS19_N: Dos2-interac 93.8 3.8 8.2E-05 41.1 16.5 230 77-329 8-258 (262)
22 KOG1058 Vesicle coat complex C 93.4 4.2 9E-05 46.6 17.3 85 62-148 128-212 (948)
23 KOG2171 Karyopherin (importin) 93.3 3.3 7.1E-05 48.9 16.9 140 29-171 115-276 (1075)
24 PRK13800 putative oxidoreducta 93.2 1.4 3E-05 51.1 14.0 115 35-169 624-739 (897)
25 KOG2259 Uncharacterized conser 92.4 24 0.00051 40.3 22.4 79 50-133 180-258 (823)
26 PLN03200 cellulose synthase-in 91.7 5.3 0.00011 50.5 16.8 114 34-147 448-572 (2102)
27 KOG1061 Vesicle coat complex A 91.4 4.3 9.2E-05 46.3 14.4 348 33-408 69-491 (734)
28 PF02985 HEAT: HEAT repeat; I 90.6 0.13 2.8E-06 34.8 1.1 28 70-97 2-29 (31)
29 PRK13800 putative oxidoreducta 90.2 1.2 2.5E-05 51.7 9.1 91 66-169 619-709 (897)
30 PF05804 KAP: Kinesin-associat 89.8 8.9 0.00019 43.8 15.4 134 207-360 468-610 (708)
31 KOG0212 Uncharacterized conser 89.2 11 0.00024 42.0 14.9 143 31-180 124-286 (675)
32 PF10508 Proteasom_PSMB: Prote 88.4 42 0.00091 36.6 21.3 87 29-115 116-209 (503)
33 PF12348 CLASP_N: CLASP N term 87.5 6.2 0.00013 37.3 10.6 162 29-204 23-192 (228)
34 PLN03200 cellulose synthase-in 87.5 6.1 0.00013 50.0 12.9 132 32-168 609-759 (2102)
35 PF02854 MIF4G: MIF4G domain; 87.0 3.4 7.3E-05 37.5 8.2 171 194-402 4-186 (209)
36 KOG1059 Vesicle coat complex A 85.9 16 0.00034 42.0 13.9 237 63-332 139-382 (877)
37 COG5096 Vesicle coat complex, 85.8 3.1 6.7E-05 47.7 8.7 98 43-142 67-164 (757)
38 smart00543 MIF4G Middle domain 84.6 31 0.00068 31.3 13.7 168 196-401 6-176 (200)
39 PF05918 API5: Apoptosis inhib 84.5 75 0.0016 35.6 29.1 344 30-427 57-424 (556)
40 cd06561 AlkD_like A new struct 84.2 5 0.00011 37.0 8.0 114 29-148 71-184 (197)
41 PF12719 Cnd3: Nuclear condens 83.4 11 0.00024 37.9 10.6 62 76-137 35-96 (298)
42 PF08713 DNA_alkylation: DNA a 83.3 3.4 7.5E-05 38.6 6.6 80 67-148 119-198 (213)
43 PF14500 MMS19_N: Dos2-interac 82.8 18 0.00038 36.4 11.7 177 155-349 10-200 (262)
44 PF13001 Ecm29: Proteasome sta 82.7 8.7 0.00019 41.8 10.2 130 5-134 268-443 (501)
45 COG5096 Vesicle coat complex, 82.5 8.3 0.00018 44.3 10.2 87 62-151 121-212 (757)
46 PF13513 HEAT_EZ: HEAT-like re 81.8 1.7 3.6E-05 32.4 3.2 36 84-119 3-42 (55)
47 PF13513 HEAT_EZ: HEAT-like re 81.4 2.3 5E-05 31.6 3.8 49 46-94 2-54 (55)
48 KOG1059 Vesicle coat complex A 80.9 66 0.0014 37.2 16.2 49 73-121 304-352 (877)
49 PF12348 CLASP_N: CLASP N term 79.5 21 0.00046 33.7 10.5 92 45-137 67-163 (228)
50 KOG1062 Vesicle coat complex A 76.4 1.6E+02 0.0035 34.4 20.3 66 84-149 250-318 (866)
51 PF11698 V-ATPase_H_C: V-ATPas 74.5 5.1 0.00011 36.0 4.5 61 34-95 48-113 (119)
52 cd07064 AlkD_like_1 A new stru 74.4 42 0.00091 32.3 11.1 109 34-148 85-193 (208)
53 KOG2171 Karyopherin (importin) 74.0 32 0.00069 41.1 11.8 139 67-209 388-536 (1075)
54 KOG1943 Beta-tubulin folding c 73.9 42 0.00091 40.1 12.6 63 52-116 527-590 (1133)
55 PF01347 Vitellogenin_N: Lipop 73.3 15 0.00032 40.2 8.7 95 43-148 502-601 (618)
56 PF08506 Cse1: Cse1; InterPro 72.1 59 0.0013 34.3 12.4 74 255-332 277-357 (370)
57 TIGR00207 fliG flagellar motor 71.1 77 0.0017 33.0 12.9 75 10-84 56-134 (338)
58 PF08678 Rsbr_N: Rsbr N termin 69.8 16 0.00036 33.3 6.7 48 382-435 54-108 (129)
59 TIGR02270 conserved hypothetic 69.5 26 0.00056 37.5 9.2 86 69-169 87-172 (410)
60 KOG2025 Chromosome condensatio 69.2 16 0.00035 41.8 7.8 133 11-148 63-202 (892)
61 PF05823 Gp-FAR-1: Nematode fa 67.4 8.5 0.00018 35.8 4.5 130 185-320 5-150 (154)
62 PF12755 Vac14_Fab1_bd: Vacuol 66.3 12 0.00025 32.2 4.8 53 66-118 25-81 (97)
63 PF04826 Arm_2: Armadillo-like 65.2 44 0.00095 33.5 9.3 132 30-169 10-159 (254)
64 COG1413 FOG: HEAT repeat [Ener 63.2 23 0.00051 35.4 7.1 76 67-149 179-254 (335)
65 KOG1077 Vesicle coat complex A 61.4 3E+02 0.0065 32.2 15.6 32 36-67 153-184 (938)
66 PF01465 GRIP: GRIP domain; I 61.1 12 0.00026 28.1 3.4 36 101-139 6-41 (46)
67 PF04286 DUF445: Protein of un 59.9 1.9E+02 0.0042 28.9 14.1 141 28-174 138-305 (367)
68 PF00514 Arm: Armadillo/beta-c 59.8 6.2 0.00014 27.8 1.7 30 68-97 12-41 (41)
69 KOG2160 Armadillo/beta-catenin 59.7 1.5E+02 0.0032 31.4 12.3 83 34-116 126-220 (342)
70 KOG4653 Uncharacterized conser 58.9 1E+02 0.0022 36.4 11.6 88 29-116 724-836 (982)
71 KOG2274 Predicted importin 9 [ 58.5 3.9E+02 0.0084 32.0 20.4 92 50-141 469-566 (1005)
72 KOG0212 Uncharacterized conser 57.9 86 0.0019 35.4 10.5 209 19-238 192-427 (675)
73 KOG0166 Karyopherin (importin) 56.8 39 0.00084 37.4 7.8 98 37-134 158-266 (514)
74 TIGR02270 conserved hypothetic 55.9 48 0.001 35.5 8.2 88 29-129 114-202 (410)
75 PF14225 MOR2-PAG1_C: Cell mor 54.4 1E+02 0.0022 31.1 9.8 119 12-131 130-254 (262)
76 PF12530 DUF3730: Protein of u 53.8 2.2E+02 0.0048 27.7 14.6 64 76-139 9-72 (234)
77 smart00638 LPD_N Lipoprotein N 53.4 42 0.0009 36.7 7.5 125 8-132 325-473 (574)
78 PF10363 DUF2435: Protein of u 51.5 57 0.0012 27.7 6.5 81 32-115 3-87 (92)
79 smart00638 LPD_N Lipoprotein N 51.5 50 0.0011 36.1 7.7 15 81-95 459-473 (574)
80 COG5240 SEC21 Vesicle coat com 49.1 2.5E+02 0.0054 32.2 12.3 118 49-169 282-408 (898)
81 PF03715 Noc2: Noc2p family; 47.2 90 0.002 32.0 8.3 157 83-282 129-297 (299)
82 KOG2956 CLIP-associating prote 46.7 4.4E+02 0.0096 29.3 13.5 89 103-191 285-377 (516)
83 PF07539 DRIM: Down-regulated 46.0 1.5E+02 0.0032 27.2 8.7 48 66-116 15-62 (141)
84 PF12719 Cnd3: Nuclear condens 43.6 1.1E+02 0.0023 30.8 8.1 101 32-132 26-141 (298)
85 KOG2256 Predicted protein invo 43.3 5.7E+02 0.012 29.4 18.1 92 55-148 269-370 (661)
86 cd07920 Pumilio Pumilio-family 42.6 3.5E+02 0.0076 26.8 12.3 73 90-175 10-87 (322)
87 KOG0213 Splicing factor 3b, su 41.9 6.7E+02 0.015 29.9 17.6 293 29-348 756-1102(1172)
88 COG5218 YCG1 Chromosome conden 41.9 95 0.0021 35.4 7.9 110 31-146 90-206 (885)
89 PF04826 Arm_2: Armadillo-like 41.7 1.3E+02 0.0029 30.0 8.4 81 80-169 107-201 (254)
90 PRK05686 fliG flagellar motor 40.1 4.4E+02 0.0096 27.3 12.7 152 15-168 65-245 (339)
91 PF04380 BMFP: Membrane fusoge 39.8 1.1E+02 0.0023 25.4 6.2 36 181-216 24-62 (79)
92 KOG2137 Protein kinase [Signal 39.7 2.3E+02 0.0049 32.8 10.5 151 182-361 342-500 (700)
93 smart00185 ARM Armadillo/beta- 39.5 18 0.00039 24.5 1.3 28 69-96 13-40 (41)
94 KOG2259 Uncharacterized conser 39.3 6.8E+02 0.015 29.2 16.8 60 72-131 377-436 (823)
95 KOG2956 CLIP-associating prote 39.0 1.7E+02 0.0038 32.3 9.1 118 29-149 283-416 (516)
96 PRK15338 type III secretion sy 38.6 5.3E+02 0.011 27.7 18.3 22 200-221 237-258 (372)
97 PF07528 DZF: DZF domain; Int 36.9 65 0.0014 32.3 5.3 70 256-328 110-187 (248)
98 KOG0953 Mitochondrial RNA heli 36.0 60 0.0013 36.7 5.2 101 228-330 516-626 (700)
99 PF10395 Utp8: Utp8 family; I 34.7 2.7E+02 0.0059 32.1 10.2 67 186-262 548-614 (670)
100 COG1413 FOG: HEAT repeat [Ener 33.9 4.9E+02 0.011 25.9 15.3 103 32-149 43-147 (335)
101 PF12755 Vac14_Fab1_bd: Vacuol 33.6 71 0.0015 27.4 4.3 52 37-88 32-88 (97)
102 PF03914 CBF: CBF/Mak21 family 33.0 2.4E+02 0.0051 25.8 8.0 74 254-329 21-97 (164)
103 KOG1243 Protein kinase [Genera 32.9 5.1E+02 0.011 30.0 11.9 200 137-401 214-416 (690)
104 cd07920 Pumilio Pumilio-family 32.5 5E+02 0.011 25.7 12.2 20 156-175 212-231 (322)
105 KOG2973 Uncharacterized conser 31.5 6.6E+02 0.014 26.7 12.1 236 70-349 5-269 (353)
106 KOG0211 Protein phosphatase 2A 30.1 1.9E+02 0.0041 33.8 8.2 46 53-98 220-267 (759)
107 PF10165 Ric8: Guanine nucleot 29.8 7.4E+02 0.016 26.7 17.5 72 75-146 39-119 (446)
108 cd00864 PI3Ka Phosphoinositide 29.7 90 0.002 28.8 4.7 75 31-116 38-113 (152)
109 KOG1060 Vesicle coat complex A 29.7 7.6E+02 0.017 29.4 12.6 70 76-145 400-469 (968)
110 KOG0168 Putative ubiquitin fus 29.6 8E+02 0.017 29.5 12.8 138 103-269 209-368 (1051)
111 PF08064 UME: UME (NUC010) dom 28.7 1.6E+02 0.0034 25.5 5.8 79 71-149 18-98 (107)
112 PF06685 DUF1186: Protein of u 28.6 1.2E+02 0.0027 30.5 5.7 52 65-116 108-161 (249)
113 PF12530 DUF3730: Protein of u 27.7 5.8E+02 0.013 24.9 10.2 127 7-134 14-151 (234)
114 COG2960 Uncharacterized protei 26.6 1.8E+02 0.0039 25.8 5.6 42 175-216 27-71 (103)
115 cd00159 RhoGAP RhoGAP: GTPase- 26.2 81 0.0018 27.9 3.7 67 49-115 53-122 (169)
116 smart00582 RPR domain present 25.8 1.4E+02 0.0031 25.5 5.0 36 84-119 11-46 (121)
117 KOG0915 Uncharacterized conser 25.7 8.6E+02 0.019 31.0 12.6 113 34-149 1237-1358(1702)
118 COG5240 SEC21 Vesicle coat com 25.6 6.6E+02 0.014 29.1 10.9 129 29-170 408-555 (898)
119 PF12726 SEN1_N: SEN1 N termin 25.3 3.5E+02 0.0077 30.9 9.3 110 48-171 440-551 (727)
120 PF06757 Ins_allergen_rp: Inse 25.2 5.7E+02 0.012 23.9 9.9 13 137-149 99-111 (179)
121 PF10193 Telomere_reg-2: Telom 25.0 1.5E+02 0.0033 26.0 5.1 71 79-149 15-94 (114)
122 PF06708 DUF1195: Protein of u 24.9 42 0.00091 31.3 1.5 36 55-97 109-144 (157)
123 KOG4121 Nuclear pore complex, 24.7 3.7E+02 0.008 32.5 9.2 59 55-117 859-930 (1128)
124 KOG0414 Chromosome condensatio 24.0 3.6E+02 0.0078 33.1 9.1 132 31-170 894-1061(1251)
125 smart00755 Grip golgin-97, Ran 23.5 1.2E+02 0.0026 22.9 3.5 35 101-139 5-39 (46)
126 cd03561 VHS VHS domain family; 23.5 1.2E+02 0.0025 27.1 4.1 70 257-327 62-132 (133)
127 KOG2137 Protein kinase [Signal 23.3 4.2E+02 0.0091 30.7 9.1 91 84-175 306-401 (700)
128 PF08767 CRM1_C: CRM1 C termin 23.3 5.4E+02 0.012 26.4 9.4 55 275-329 142-196 (319)
129 cd04388 RhoGAP_p85 RhoGAP_p85: 22.8 1.1E+02 0.0023 29.7 4.0 62 298-361 129-191 (200)
130 PF12830 Nipped-B_C: Sister ch 22.5 6.5E+02 0.014 23.6 9.9 142 34-176 10-169 (187)
131 PF07571 DUF1546: Protein of u 22.4 93 0.002 26.3 3.1 55 79-146 17-75 (92)
132 KOG0989 Replication factor C, 22.2 3.1E+02 0.0067 29.1 7.3 95 50-151 172-269 (346)
133 KOG4413 26S proteasome regulat 22.1 1E+03 0.022 25.8 12.5 295 14-334 63-411 (524)
134 KOG4524 Uncharacterized conser 21.3 5.5E+02 0.012 30.9 9.7 92 294-412 818-913 (1014)
135 COG5181 HSH155 U2 snRNP splice 21.2 8.4E+02 0.018 28.5 10.8 230 70-326 360-655 (975)
136 PF10521 DUF2454: Protein of u 21.2 6.3E+02 0.014 25.3 9.3 66 70-135 121-204 (282)
137 KOG2235 Uncharacterized conser 21.1 3.7E+02 0.0081 30.9 8.0 37 228-264 606-644 (776)
138 smart00567 EZ_HEAT E-Z type HE 20.9 99 0.0021 20.2 2.4 28 83-116 2-29 (30)
139 PF11935 DUF3453: Domain of un 20.9 1.6E+02 0.0035 29.0 4.8 42 316-357 148-194 (239)
140 PHA02713 hypothetical protein; 20.7 3.8E+02 0.0083 29.6 8.2 105 31-138 93-203 (557)
141 PF11935 DUF3453: Domain of un 20.7 7.1E+02 0.015 24.5 9.3 117 246-367 3-155 (239)
142 KOG2021 Nuclear mRNA export fa 20.6 1.5E+03 0.032 27.1 14.5 215 78-306 711-959 (980)
143 COG5099 RNA-binding protein of 20.6 1.2E+03 0.027 27.4 12.4 84 90-181 440-524 (777)
144 KOG1824 TATA-binding protein-i 20.5 1.6E+03 0.035 27.5 17.7 253 63-335 42-312 (1233)
145 PF03130 HEAT_PBS: PBS lyase H 20.1 1.3E+02 0.0028 19.6 2.8 26 84-115 1-26 (27)
No 1
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=100.00 E-value=4.2e-141 Score=1119.69 Aligned_cols=436 Identities=56% Similarity=0.869 Sum_probs=337.4
Q ss_pred HHHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHh
Q 013085 10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI 89 (449)
Q Consensus 10 ~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAi 89 (449)
+||+||++||||++|+|+++|+++|++||+|+||+.++|+|||||||||||+||+|+++||||++|||||||++||+|||
T Consensus 1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 90 k~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|+||.+||+||+||+||||||+|||||||++|+++||+||++||++|||+||++||+||.++ +++||.+|||+|+||+
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR 158 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999965 3788899999999999
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCC
Q 013085 170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249 (449)
Q Consensus 170 ~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD 249 (449)
+||+++++++++|++|+|++|+++|||+|+|||++||++||++|++|++|+...|..|+|+||++|.+||+||++|+++|
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD 238 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD 238 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999765555568999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 250 ~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y 329 (449)
+++|||||+|+++|+||||+|++|++||+|+|++|||+|++|+++.|+++||+|||+|||||.+|++++|++||++|++|
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~y 318 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKY 318 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHHHHHHHHH
Q 013085 330 MPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKL 409 (449)
Q Consensus 330 mP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~q~yikkL 409 (449)
||.+.+ .+++||||||||||+||+||+|+|+++++|||||+||||||||+|+|+++++||||.|||||+|++|+|||+|
T Consensus 319 mP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl 397 (556)
T PF05918_consen 319 MPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKL 397 (556)
T ss_dssp S-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998865 8899999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHhhhhhhHhhhcchhhHHH--------HHH-hhhhhhhhhceecc
Q 013085 410 TQGLADHNKEMAAAKTDEAKEK--------IVS-LFLEIVCSFCGMIY 448 (449)
Q Consensus 410 ~~~l~~~~K~~~~~kteenk~k--------v~~-~~~~~~~~~~~~~~ 448 (449)
+++|++|+|++.++|+++++.+ +++ ++.+|+.+.|+.++
T Consensus 398 ~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~ 445 (556)
T PF05918_consen 398 KQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLF 445 (556)
T ss_dssp HHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 9999888888877777776544 333 48888888887653
No 2
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3e-117 Score=893.34 Aligned_cols=386 Identities=60% Similarity=0.900 Sum_probs=379.7
Q ss_pred hHHHHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHH
Q 013085 8 AKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQ 87 (449)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~q 87 (449)
|++||+||++||||++|+|++||+++|++||++|||+.|+||||||||||||||||+|+++|||||+|||||+|++||+|
T Consensus 1 ~~~ie~ly~~~e~l~~a~dk~q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~q 80 (460)
T KOG2213|consen 1 MDNIEKLYEFYEILSEATDKSQHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQ 80 (460)
T ss_pred CchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 013085 88 AIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (449)
Q Consensus 88 Aik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~F 167 (449)
|||+||.||++ +.++||+|||+|||+ |++|+|||.||. .+|+++|||+++|
T Consensus 81 aik~lp~fc~~--d~~~rv~d~l~qLLn----------------------k~sl~~Lf~~~~-----~~D~~irek~l~f 131 (460)
T KOG2213|consen 81 AIKGLPLFCKG--DALSRVNDVLVQLLN----------------------KASLTGLFGQIE-----VGDEQIREKVLKF 131 (460)
T ss_pred HHhccchhccC--chhhhhHHHHHHHHH----------------------HHHHHHHHhhhh-----hhhHHHHHHHHHH
Confidence 99999999999 899999999999999 899999999998 5799999999999
Q ss_pred HhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCC
Q 013085 168 IRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNV 247 (449)
Q Consensus 168 l~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~ 247 (449)
|++|+.+++.|+++ +|+|++|+++|||+|+|||++||.+||++|.++|++|+++|+.|+|+|+++++++|+||. |++
T Consensus 132 i~tKl~~l~~e~L~--kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~ 208 (460)
T KOG2213|consen 132 IRTKLITLKGEVLT--KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNV 208 (460)
T ss_pred HHHHhhcccHHHhh--hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccC
Confidence 99999999999995 899999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccC-CCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHH
Q 013085 248 SDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-FDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL 326 (449)
Q Consensus 248 sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~-l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L 326 (449)
+|+++|||||+|+++|+|||+||++||+||+|+|+|++|+ ++.+++++||++||+||||||||+++.|+|+||+||++|
T Consensus 209 sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elL 288 (460)
T KOG2213|consen 209 SDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELL 288 (460)
T ss_pred CChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHHHHHH
Q 013085 327 KKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATM 406 (449)
Q Consensus 327 ~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~q~yi 406 (449)
++|||.|++ .+++||||||||||+||+||+|.|||++..||||+++|||+|+++++|....|+|..||.-.+...++..
T Consensus 289 k~yMpa~kt-~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~~ad~l~r~fq~y~K~t~E~L~t~edqiKat~ 367 (460)
T KOG2213|consen 289 KEYMPAPKT-GEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDFRADYLARGFQEYIKKTGEALKTEEDQIKATA 367 (460)
T ss_pred HHhcccCCc-cHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHhhhcch
Q 013085 407 KKLTQGLADHNKEMAAAKTD 426 (449)
Q Consensus 407 kkL~~~l~~~~K~~~~~kte 426 (449)
+++++.|+.|.|.+...|++
T Consensus 368 ~klT~~is~l~Kal~~~k~~ 387 (460)
T KOG2213|consen 368 LKLTQNISELIKALFHAKPD 387 (460)
T ss_pred hhhhccHHHHHhhHhcCCCc
Confidence 99999999999999999999
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.88 E-value=0.0062 Score=65.73 Aligned_cols=316 Identities=18% Similarity=0.222 Sum_probs=187.1
Q ss_pred HHhHHHHHH-Hcc-CCHHHHHHHhhhhhHhhccCcc-----chHHHHHHhhhhhcccchhHHHHHhhccccccccCccch
Q 013085 31 VKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPD-----LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 31 ~~~y~~Il~-~~k-g~~k~K~LaAqfI~kffk~FP~-----L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v 103 (449)
...|...+. |.+ +++.+|+||..-|.|...+-.. .....+..++++..|+|..|...|++.|-.+++.. ...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhH
Confidence 444555444 444 8899999999999999888766 44567788899999999999999999999999864 455
Q ss_pred hhH-----HHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHH----HHHHHhhccCCCCCChH-HHHHHHHHHHhhhc-
Q 013085 104 SKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL----TALFKHIGSVDEPSTDE-FIREKVLSFIRDKV- 172 (449)
Q Consensus 104 ~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL----~~lf~qI~~~~~~~~ee-~~Re~~l~Fl~~kl- 172 (449)
..+ ...|.+++...+..-+-.|-..+..+.+..+...= +|+++++.. +-.++| .+|..++..|.+=.
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~--eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK--ELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH--HhcCccHHHHHHHHHHHHHHHc
Confidence 555 66789999886667777888899999888765432 457777663 223444 59999998887422
Q ss_pred ccchhhhcCChHHHHHHHHHHHHhhccccchHH-H-----HHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCC
Q 013085 173 FPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-F-----RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 246 (449)
Q Consensus 173 ~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~E-F-----~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~ 246 (449)
.+-...++ .+.-+++.+-..+.+.+.+. + .-.|.+...+-.+++...-++...+++.+.+. ++
T Consensus 232 ~~~g~~yL-----~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~------~~ 300 (503)
T PF10508_consen 232 TPHGLQYL-----EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSM------LE 300 (503)
T ss_pred ChhHHHHH-----HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHH------hC
Confidence 22233333 12223444444444443333 2 22355656555542222222334455544433 33
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCChhhHH--------HHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCCh---hhH
Q 013085 247 VSDADHIDRLISCLYMALPFFLRGASGSKFL--------NYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP---QDS 315 (449)
Q Consensus 247 ~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv--------~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~---~da 315 (449)
..|+... .|+--++-.+...+.+-.++ .-+.+.+.-.....+.+.|++.|..||-+-...+. ++.
T Consensus 301 s~d~~~~----~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 301 SQDPTIR----EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred CCChhHH----HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 4444333 23333333444445554444 22333444444555668999999999999543332 234
Q ss_pred hhhhHHHHHHHHhhCCCCCCC-----CCCcchHHHHHHHHHHHhhhhcCCcccccccc
Q 013085 316 RQILPSVAVLLKKYMPLRKTG-----GEEMNFTYVECLLYTFHHLAHKAPNATNSLCG 368 (449)
Q Consensus 316 ~~~l~~i~~~L~~ymP~~~~~-----~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg 368 (449)
..+...+|+.+ ...|.. --+=.|.-+-|--|.+=+---.+|-....+|+
T Consensus 377 ~~~~~~w~~~~----~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~ 430 (503)
T PF10508_consen 377 LSITESWYESL----SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICS 430 (503)
T ss_pred HHHHHHHHHHh----cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 45555555543 222221 01234666777666655444444444444443
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.68 E-value=0.0049 Score=64.88 Aligned_cols=280 Identities=14% Similarity=0.158 Sum_probs=159.8
Q ss_pred ccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhh-HHHHHHHHHhcchh
Q 013085 41 AKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEI 119 (449)
Q Consensus 41 ~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k-iaDVL~QLLqtdd~ 119 (449)
..+++-.+-+|=.++++.- -|++.+.-+..+..+..|.++-||+.|+-.+..+++..|+.+.. +.+.|.++|...++
T Consensus 89 ~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDP 166 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSH
T ss_pred cCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcc
Confidence 3467788888888888866 78999999999999999999999999999999999999999888 79999999977776
Q ss_pred HHHHHHHHHHHHHHccchhh---HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHH--HHHHHHH
Q 013085 120 VERDAVHKALMSLLRQDVKA---SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEME--RHITDLI 194 (449)
Q Consensus 120 ~E~~~V~~sL~~ll~~d~k~---tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E--~~i~~~i 194 (449)
.-+..+-.++..+ +.++.. .+..++.++... -+..++-++.++++++..-...-+ +.. ..++..+
T Consensus 167 ~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~~--------~~~~~~~~i~~l 236 (526)
T PF01602_consen 167 SVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQL-LSDPDPWLQIKILRLLRRYAPMEP--------EDADKNRIIEPL 236 (526)
T ss_dssp HHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSSH--------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhc-ccccchHHHHHHHHHHHhcccCCh--------hhhhHHHHHHHH
Confidence 6666655566666 555554 445566554310 025677788899998873322111 111 2344444
Q ss_pred HhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChh
Q 013085 195 KKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGS 274 (449)
Q Consensus 195 kK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~St 274 (449)
...|+. ...-+ +++..+.+-.+.. .++ -.+..+..+..- +..+|+..-=-.+.++.+.. .+. .
T Consensus 237 ~~~l~s--~~~~V-~~e~~~~i~~l~~-~~~-~~~~~~~~L~~l------L~s~~~nvr~~~L~~L~~l~---~~~---~ 299 (526)
T PF01602_consen 237 LNLLQS--SSPSV-VYEAIRLIIKLSP-SPE-LLQKAINPLIKL------LSSSDPNVRYIALDSLSQLA---QSN---P 299 (526)
T ss_dssp HHHHHH--HHHHH-HHHHHHHHHHHSS-SHH-HHHHHHHHHHHH------HTSSSHHHHHHHHHHHHHHC---CHC---H
T ss_pred HHHhhc--cccHH-HHHHHHHHHHhhc-chH-HHHhhHHHHHHH------hhcccchhehhHHHHHHHhh---ccc---c
Confidence 444431 11111 2222222222211 111 123333333332 22333321111222333322 111 1
Q ss_pred hHHHHHHHhhccCCC-CCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013085 275 KFLNYLNKHIIPVFD-KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFH 353 (449)
Q Consensus 275 kfv~y~~~~VlP~l~-~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH 353 (449)
+.+. ...-++-.+. +=+...|..-|..+..++. ..++..|.+.|..|+... =+.++.+.+..+..
T Consensus 300 ~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~~~------~d~~~~~~~i~~I~ 365 (526)
T PF01602_consen 300 PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLSEL------SDPDFRRELIKAIG 365 (526)
T ss_dssp HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHH
T ss_pred hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHHhc------cchhhhhhHHHHHH
Confidence 1111 0000111111 2244566666666666643 455666888888888321 13459999999999
Q ss_pred hhhhcCCccc
Q 013085 354 HLAHKAPNAT 363 (449)
Q Consensus 354 ~L~~k~P~~l 363 (449)
.++.++|...
T Consensus 366 ~la~~~~~~~ 375 (526)
T PF01602_consen 366 DLAEKFPPDA 375 (526)
T ss_dssp HHHHHHGSSH
T ss_pred HHHhccCchH
Confidence 9999998754
No 5
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.39 E-value=0.006 Score=56.78 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=97.1
Q ss_pred HHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccch-hhHHHHHHHHHhcchhHHHH
Q 013085 45 LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-SKIVDILVQLLAAEEIVERD 123 (449)
Q Consensus 45 ~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v-~kiaDVL~QLLqtdd~~E~~ 123 (449)
+.++.-+---+.-.-.+||++-|.-+..++....|+++.||++|+.-|-.+-..+.--+ ..+-.-+..+|.-+++.-++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 34455555566677788999999999999999999999999999999999876532111 12212223456666777788
Q ss_pred HHHHHHHHHHcc-chhhHHHH---HHHhhccCCC-C---CChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHH
Q 013085 124 AVHKALMSLLRQ-DVKASLTA---LFKHIGSVDE-P---STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIK 195 (449)
Q Consensus 124 ~V~~sL~~ll~~-d~k~tL~~---lf~qI~~~~~-~---~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ik 195 (449)
..+..+.++.+. +|....+. +++++....+ + ....+-|.++++|+-+.+.. .+..+..+...+.
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--------d~~~~~l~~kl~~ 153 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--------DKQKESLVEKLCQ 153 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHH
Confidence 899999999887 66543332 3333332111 1 23456889999999866532 2334555555555
Q ss_pred hhcccc
Q 013085 196 KSLEDV 201 (449)
Q Consensus 196 K~L~dV 201 (449)
+++..+
T Consensus 154 ~~~~~~ 159 (178)
T PF12717_consen 154 RFLNAV 159 (178)
T ss_pred HHHHHc
Confidence 554444
No 6
>PTZ00429 beta-adaptin; Provisional
Probab=97.33 E-value=0.081 Score=60.16 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=87.1
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q 112 (449)
|-.++.... .+...|||.--++-.|.+.-|+++--|+|++..=|.|.++.||--|+|-+..+.- |+.+.-+..-+.+
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk 147 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRR 147 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 444444444 6788999999999999999999999999999999999999999999999998853 4677777777888
Q ss_pred HHhcchhHHHHHHHHHHHHHHccchh
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDVK 138 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~k 138 (449)
.|...+|-.+..+=-++..+++.||.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 89888888888777788888888884
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.74 E-value=0.18 Score=53.22 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=161.5
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHH
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL 110 (449)
..|-.++.... .+...||++==++..|+..=|++.--++|++..=+.+.++.||--|++.|..++ +|+.++-+.+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v 119 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDV 119 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHH
Confidence 55667777666 779999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHccchhhH---HHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHH
Q 013085 111 VQLLAAEEIVERDAVHKALMSLLRQDVKAS---LTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEME 187 (449)
Q Consensus 111 ~QLLqtdd~~E~~~V~~sL~~ll~~d~k~t---L~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E 187 (449)
.++|...+|.-+..+=-++..+++.+|... +...+.++.. +.+..++.-++..+.+= ..-+.... .+-
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~----d~~~~V~~~a~~~l~~i-~~~~~~~~----~~~ 190 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS----DKDPSVVSAALSLLSEI-KCNDDSYK----SLI 190 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT----HSSHHHHHHHHHHHHHH-HCTHHHHT----THH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHHH-ccCcchhh----hhH
Confidence 999999999777777778888888888753 2222333321 33456888888777633 11111100 122
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHH-HHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhh
Q 013085 188 RHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERM-KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPF 266 (449)
Q Consensus 188 ~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~-qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~ 266 (449)
..+...+.+.+.+ ..++. ...+++.+..+....+.... ..+++.+..... .+ ..+| +++|++...
T Consensus 191 ~~~~~~L~~~l~~--~~~~~-q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~------s~-~~~V--~~e~~~~i~-- 256 (526)
T PF01602_consen 191 PKLIRILCQLLSD--PDPWL-QIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ------SS-SPSV--VYEAIRLII-- 256 (526)
T ss_dssp HHHHHHHHHHHTC--CSHHH-HHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH------HH-HHHH--HHHHHHHHH--
T ss_pred HHHHHHhhhcccc--cchHH-HHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh------cc-ccHH--HHHHHHHHH--
Confidence 2233333333333 33442 23344444455444544421 356776666533 11 1121 344444433
Q ss_pred hccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCC
Q 013085 267 FLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYT 310 (449)
Q Consensus 267 fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~ 310 (449)
.-.++...+...+..+...++.=++..|.-.|..+..++..-
T Consensus 257 --~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 257 --KLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp --HHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred --HhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 112222355555555555555434567888888888887753
No 8
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.45 E-value=0.013 Score=46.86 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=52.7
Q ss_pred cCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchh
Q 013085 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (449)
Q Consensus 42 kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~ 119 (449)
.+++.++.-|+..+.++- ..+++..++.++.|+|+.||.+|+..|-.+- -++..+.|.++|++++.
T Consensus 11 ~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~l~~~~~ 76 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKLLQDDDD 76 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHHHTC-SS
T ss_pred CCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHcCCCc
Confidence 377888888888888553 3488999999999999999999999999883 25677888898887654
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.43 E-value=0.12 Score=48.01 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=88.4
Q ss_pred chhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccch---hhHH-HHHHHhhccCCCCCC
Q 013085 81 ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV---KASL-TALFKHIGSVDEPST 156 (449)
Q Consensus 81 d~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~---k~tL-~~lf~qI~~~~~~~~ 156 (449)
|+.||..++..+.++|.-.|..+.+..+-|...|+.+++.-+..+=..|..|+..|. +|.+ ..+..-+. ..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~-----D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV-----DE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc-----CC
Confidence 578999999999999999999999999999999999999998888888888887764 5555 55555443 55
Q ss_pred hHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhcc--------ccchHHHHHHHHHHH
Q 013085 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLE--------DVTGAEFRMFMDFLK 214 (449)
Q Consensus 157 ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~--------dVt~~EF~l~m~lL~ 214 (449)
++.+|.-+..|+.+-.....++.+ -..+.+.+-..-. .++.+++..+|.+|-
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i------~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll 135 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNII------YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLL 135 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHH------HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHH
Confidence 668999999999865544322222 3344444432111 356666766665544
No 10
>PRK09687 putative lyase; Provisional
Probab=96.27 E-value=0.22 Score=50.03 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=94.8
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhh-hcccchhHHHHHhhccccccccCccchhhHH
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
..+.+..+....+ .++.+++.|+.-+..+- +=+.-+.+++..+..+ .+|.|..||.+|+..|-.+|...+.|.++..
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLG-MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 4556777777666 78899999998888853 2222257889888888 8999999999999999999998888888888
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 108 DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..|..++..+++..+-.+-.+|- ++.....+..|..-+. ..+..||..++.-|-
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg---~~~~~~ai~~L~~~L~-----d~~~~VR~~A~~aLg 184 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALS---VINDEAAIPLLINLLK-----DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHh---ccCCHHHHHHHHHHhc-----CCCHHHHHHHHHHHh
Confidence 87877777777766655555553 3334456666665554 444568877776553
No 11
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.82 Score=55.18 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=91.0
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
.|.+--+++..-.- .++.++.=|=-++.||.-..|++..+=.+.+..=.-|..+.||+-|||-+-.+|-++|++ ++++
T Consensus 852 ~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf-~~i~ 930 (1692)
T KOG1020|consen 852 SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF-SKIV 930 (1692)
T ss_pred cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh-hhHH
Confidence 56666667766555 778999999999999999999999999999999999999999999999999999999876 5688
Q ss_pred HHHHHHHh--cchhH-HHHHHHHHHHHHHcc
Q 013085 108 DILVQLLA--AEEIV-ERDAVHKALMSLLRQ 135 (449)
Q Consensus 108 DVL~QLLq--tdd~~-E~~~V~~sL~~ll~~ 135 (449)
||.+.+|- +||.. --+.|...+..+|=.
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 99999994 55544 677888888888843
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.97 E-value=0.032 Score=46.06 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=64.2
Q ss_pred HHHHHHhhhhhcccchhHHHHHhhccccccccCccchh-----hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh---
Q 013085 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--- 138 (449)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--- 138 (449)
...+..+++++.|.+..+|..|+..|-.+|+++|+... .+.+.|.++|+++++.-+..+=.+|..+....+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34677788888888888999999999999988666644 4455788888887766666666666666654432
Q ss_pred -----hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 139 -----ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 139 -----~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|.+..+...+. .++..+|+.++..+.
T Consensus 86 ~~~~~g~l~~l~~~l~-----~~~~~~~~~a~~~l~ 116 (120)
T cd00020 86 IVLEAGGVPKLVNLLD-----SSNEDIQKNATGALS 116 (120)
T ss_pred HHHHCCChHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 23344444433 234456666655553
No 13
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.93 E-value=0.026 Score=48.09 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHhhhhhcccchhHHHHHhhccccccccCc---cchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHH
Q 013085 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP---EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTA 143 (449)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~---e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~ 143 (449)
.++++..+..+.|..+.||..|+..|-.+.+... .++++|.+++.+.|+-+|+=-.-.+=+.|.++...+|+.++..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4566777777889999999999999999998876 6789999999999998888887777789999999999999999
Q ss_pred HHHhhc
Q 013085 144 LFKHIG 149 (449)
Q Consensus 144 lf~qI~ 149 (449)
++.+-.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 988765
No 14
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.83 E-value=0.066 Score=42.78 Aligned_cols=84 Identities=26% Similarity=0.357 Sum_probs=62.0
Q ss_pred HHHhhhhh-cccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 70 VDAHLDLI-EEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 70 i~a~lDLc-EDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
|..+++.+ +|+|+.||..|++.|-.+.. +++.+.|.++|+++++. +...++.++=++........|...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~---vr~~a~~aL~~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPM---VRRAAARALGRIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHH---HHHHHHHHHHCCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56788888 99999999999999997742 46888999999877765 4455666666677777777777666
Q ss_pred ccCCCCCChHHHHHHHHH
Q 013085 149 GSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 149 ~~~~~~~~ee~~Re~~l~ 166 (449)
.+ ..+..+|..++.
T Consensus 72 ~~----~~~~~vr~~a~~ 85 (88)
T PF13646_consen 72 QD----DDDEVVREAAAE 85 (88)
T ss_dssp TC-----SSHHHHHHHHH
T ss_pred cC----CCcHHHHHHHHh
Confidence 52 234557877665
No 15
>PRK09687 putative lyase; Provisional
Probab=95.56 E-value=0.18 Score=50.66 Aligned_cols=127 Identities=17% Similarity=0.074 Sum_probs=95.7
Q ss_pred HHhHHHHHHH-cc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 31 VKDYEGIIEA-AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 31 ~~~y~~Il~~-~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.+.+..+... .+ .++.+++-|+.-+..+-..-+....++++.+.-+..|++..||..|+.+|..+.. ....+
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------~~ai~ 162 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------EAAIP 162 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------HHHHH
Confidence 3455556554 34 7788999999999998777777778899988888999999999999999987742 45778
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 109 VL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.|.++|..+++.-+...-.+|-.+ ..+...+...|..-+. ..++.||..++.-|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSN-KYDNPDIREAFVAMLQ-----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Confidence 999999988775454444444444 3345567777776664 567789999998774
No 16
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.47 E-value=0.0099 Score=62.53 Aligned_cols=39 Identities=31% Similarity=0.295 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHhhhcchhhHHHHHHh
Q 013085 385 SDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSL 435 (449)
Q Consensus 385 ~~~~kdF~~RLqy~~~~~q~yikkL~~~l~~~~K~~~~~kteenk~kv~~~ 435 (449)
+++++|| |++|++|+.|.|+| |++++++++||++|.++.
T Consensus 330 ~K~L~~~--~ad~l~r~fq~y~K----------~t~E~L~t~edqiKat~~ 368 (460)
T KOG2213|consen 330 AKKLKDF--RADYLARGFQEYIK----------KTGEALKTEEDQIKATAL 368 (460)
T ss_pred hhhhccc--hHHHHhhhhHHHHH----------HHHHHHHHHHHHHHHhhh
Confidence 8999999 99999999999999 478888899999999875
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=95.44 E-value=5.4 Score=45.80 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=43.4
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHH--HHHHhhhhhcccchhHHHHHhhccccccccCcc
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSR--AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~--Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e 101 (449)
.++-+++=||--|.|.|+.+|++-++ -++.+.+|..|.|+.|...|+..|-.+|..+|+
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 66777777888888888888877543 367777777788888888888777777766544
No 18
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=1.4 Score=49.92 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=93.1
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q 112 (449)
|-..+.... .+...|+|.=.-+-.|-+--|+++.-|+|.+++=|+|+++.||.-|+|.+-.+-.+ ..+..+.|=|..
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~ 128 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEYLCDPLLK 128 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHHHHHHHHH
Confidence 334444444 56778999999999999999999999999999999999999999999999888543 556677777888
Q ss_pred HHhcchhHHHHHHHHHHHHHHccchhhHH-HHHHHhhc
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDVKASL-TALFKHIG 149 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~k~tL-~~lf~qI~ 149 (449)
.|..++|-.+..+.-++..+++.|+.-.- .|+.+++.
T Consensus 129 ~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 129 CLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred hccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 88899999999999999999999886332 44444443
No 19
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.24 E-value=0.87 Score=48.22 Aligned_cols=185 Identities=18% Similarity=0.265 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChH
Q 013085 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184 (449)
Q Consensus 105 kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~ 184 (449)
+.+=-|..++.|+|+.|++.++.-|..++. .+.+..+.|. ..+....+.|+.+--..- .+ .
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~-----k~~~~r~~Ir--------~~i~~~~~~fi~e~~~~~---gI---~ 193 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYG-----KFPNLRSFIR--------KSINNIFYRFIYETERHN---GI---A 193 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHH-----H-TTTHHHHH--------HHHHHHHHHHHHTTS--S---TH---H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-----HhhhhHHHHH--------HHHHHHHHHHhcCccccc---CH---H
Confidence 444446677789999999999999999884 2333333333 123344556665322111 11 1
Q ss_pred HHHHHHHHHHHhhccccc---hHHHH-HHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHH
Q 013085 185 EMERHITDLIKKSLEDVT---GAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCL 260 (449)
Q Consensus 185 E~E~~i~~~ikK~L~dVt---~~EF~-l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl 260 (449)
| +++.+..+....+ .+|.. .++.+|-.|+.-+. =...-..|..|+
T Consensus 194 e----lLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~---------------------------~~~y~~~L~~~~ 242 (409)
T PF01603_consen 194 E----LLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPH---------------------------LSSYHQQLSYCV 242 (409)
T ss_dssp H----HHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTG---------------------------GGGTHHHHHHHH
T ss_pred H----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCc---------------------------HHHHHHHHHHHH
Confidence 1 1222222222111 23333 33455555543211 123345677777
Q ss_pred HHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCc
Q 013085 261 YMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEM 340 (449)
Q Consensus 261 ~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l 340 (449)
.+ |+++.. .+...+.+.++-+|=.-....+.-+|..+.++...+.+.+-......+|..|...+= +-
T Consensus 243 ~~---f~~kdp---~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~-------S~ 309 (409)
T PF01603_consen 243 VQ---FLEKDP---SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS-------SP 309 (409)
T ss_dssp HH---HHHH-G---GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT-------SS
T ss_pred HH---HHHhCc---hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC-------CC
Confidence 77 444333 445555566666666666688999999999999999988889999999999999993 47
Q ss_pred chHHHHHHHHHH
Q 013085 341 NFTYVECLLYTF 352 (449)
Q Consensus 341 ~fs~VEcLLyaf 352 (449)
+|.++|--||.+
T Consensus 310 h~qVAErAl~~w 321 (409)
T PF01603_consen 310 HFQVAERALYFW 321 (409)
T ss_dssp SHHHHHHHHGGG
T ss_pred CHHHHHHHHHHH
Confidence 788888777654
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.23 E-value=0.3 Score=40.21 Aligned_cols=89 Identities=18% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccchhh-----HHHHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQ 112 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k-----iaDVL~Q 112 (449)
++...+.-|..-+....++.|+... .++..++++..|.++.||..|+..|-.+|.+.+....+ +...|.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 5577777777777777777665544 55678889999999999999999999999988654332 4567788
Q ss_pred HHhcchhHHHHHHHHHHHH
Q 013085 113 LLAAEEIVERDAVHKALMS 131 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ 131 (449)
+|++++..-...+-.+|.+
T Consensus 99 ~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 99 LLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 8887765555554444443
No 21
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.75 E-value=3.8 Score=41.07 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=120.5
Q ss_pred hcccchhHHHHHhhccccccccCcc-ch-hhHHHHHHHHHh--cchhHHHHHHHHHHHHHHccch------hhHHHHHHH
Q 013085 77 IEEEELGVRVQAIRGLPLFCKDTPE-YL-SKIVDILVQLLA--AEEIVERDAVHKALMSLLRQDV------KASLTALFK 146 (449)
Q Consensus 77 cEDed~~IR~qAik~Lp~lck~~~e-~v-~kiaDVL~QLLq--tdd~~E~~~V~~sL~~ll~~d~------k~tL~~lf~ 146 (449)
.-++|..+|..|+.-|-.+...-|. .+ +.=+-+|++.+. -+|..-+..+-++|.++.++.. ...+.++|+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 3468889999998877766554442 22 223345555553 2555556666778888886643 244566666
Q ss_pred hhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHH----HHHHHHHHHhc-cccCC
Q 013085 147 HIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE----FRMFMDFLKSL-SLFGE 221 (449)
Q Consensus 147 qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~E----F~l~m~lL~~l-~~~~~ 221 (449)
++.. ++--...|-.+.+.+..=+..-..++..-+ ..+|...+. + +.||- .-+.+++++.+ +.|.
T Consensus 88 ~~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~---~~fv~~~i~-~---~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 88 NVDV---QSLPQSTRYAVYQLLDSLLENHREALQSMG---DDFVYGFIQ-L---IDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred hCCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHhch---hHHHHHHHH-H---hccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 5542 233345787777766543333232331111 123322222 2 22221 11223333322 1110
Q ss_pred CCchhHHHHHHHHHHhhhcccCCCCCCCh------hhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhh
Q 013085 222 KAPTERMKELIGIIEGQADLDAQFNVSDA------DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (449)
Q Consensus 222 ~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~------d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~ 295 (449)
...-.++|-+.+.-===.+=.-++.|| |--..+..|+. ++..|-.|..-.++-+|+.=....
T Consensus 157 --~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----------s~~~fa~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 --ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----------STPLFAPFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred --cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----------CcHhhHHHHHHHHHHHHcCCCcHH
Confidence 011123343333322001101123454 44446666654 244555566666666666655578
Q ss_pred hHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085 296 KLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 296 kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y 329 (449)
|++.|+++.+.++.=|.......+..|++.|+.-
T Consensus 225 K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999877557777788888999988853
No 22
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=4.2 Score=46.60 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=70.6
Q ss_pred CccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHH
Q 013085 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (449)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL 141 (449)
=|+|-+.-+-++.+-.|-..+=||+.||-++-.|-|...+.++-..+++.-.|.+|. +-.--+||++.|+..||.-.|
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ--DPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc--CchhHHHHHHHHHhcCHHHHH
Confidence 488999999999999999999999999999999999876778888898888886653 345678999999999987776
Q ss_pred HHHHHhh
Q 013085 142 TALFKHI 148 (449)
Q Consensus 142 ~~lf~qI 148 (449)
.-+-+.|
T Consensus 206 ~Yl~~~i 212 (948)
T KOG1058|consen 206 NYLLSNI 212 (948)
T ss_pred HHHHhhH
Confidence 4444433
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=3.3 Score=48.93 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=94.5
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhh----hcccchhHHHHHhhccccccccC---c
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL----IEEEELGVRVQAIRGLPLFCKDT---P 100 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDL----cEDed~~IR~qAik~Lp~lck~~---~ 100 (449)
+-.+-..-++..++ ++++....|=-.+...=..|++-...=++.++-| ..|.+..||+.|.|++-.+...+ +
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 45566677777888 7888888887777666666666555433333333 25667779999999999888766 4
Q ss_pred cchhhHHHHHHHHH-------hcchhHHHHHHHHHHHHHHccchhhHHHHHHHh-------hccCCCCCChHHHHHHHHH
Q 013085 101 EYLSKIVDILVQLL-------AAEEIVERDAVHKALMSLLRQDVKASLTALFKH-------IGSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 101 e~v~kiaDVL~QLL-------qtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~q-------I~~~~~~~~ee~~Re~~l~ 166 (449)
.-+++.+|.|.-++ +.+|..-..-+=++|.+++...||- ++..+++ |..++ +=|+.+|-.+|.
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~-l~~~l~~ii~~~l~Ia~n~--~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL-LRPHLSQIIQFSLEIAKNK--ELENSIRHLALE 271 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHhhcc--cccHHHHHHHHH
Confidence 55666666665444 4455544677888999999999883 3444444 44322 346679999999
Q ss_pred HHhhh
Q 013085 167 FIRDK 171 (449)
Q Consensus 167 Fl~~k 171 (449)
||..-
T Consensus 272 ~ivs~ 276 (1075)
T KOG2171|consen 272 FLVSL 276 (1075)
T ss_pred HHHHH
Confidence 99743
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.22 E-value=1.4 Score=51.12 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=74.5
Q ss_pred HHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHH
Q 013085 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (449)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QL 113 (449)
..++...+ .++.+++.|++.+.++. .+.++..+.-+.+|+|..||..|+..|-.+...-+ -...|.++
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----~~~~L~~~ 692 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----PAPALRDH 692 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----chHHHHHH
Confidence 35555555 78888889988888875 25577888888889999999999888877643211 23578888
Q ss_pred HhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 114 Lqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|+.+++.-+..+=.+|..+-..++ ..+...+. ..+..+|..++.=|.
T Consensus 693 L~~~d~~VR~~A~~aL~~~~~~~~----~~l~~~L~-----D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRALRAGDA----ALFAAALG-----DPDHRVRIEAVRALV 739 (897)
T ss_pred hcCCCHHHHHHHHHHHHhhccCCH----HHHHHHhc-----CCCHHHHHHHHHHHh
Confidence 887777555444444444322222 23444443 555678877776554
No 25
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=24 Score=40.32 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=56.6
Q ss_pred HHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHH
Q 013085 50 LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129 (449)
Q Consensus 50 LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL 129 (449)
..--++..+=+..|.=.+-|+..+.++|.|.|..||.+|+++|-.+..+ .|+--++.+...+-=..+-+-|++|-
T Consensus 180 ~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-----~kL~~~~Y~~A~~~lsD~~e~VR~aA 254 (823)
T KOG2259|consen 180 CFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-----FKLSKACYSRAVKHLSDDYEDVRKAA 254 (823)
T ss_pred HHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-----ccccHHHHHHHHHHhcchHHHHHHHH
Confidence 3344677777888888999999999999999999999999999988653 44444555555433333334566665
Q ss_pred HHHH
Q 013085 130 MSLL 133 (449)
Q Consensus 130 ~~ll 133 (449)
++++
T Consensus 255 vqlv 258 (823)
T KOG2259|consen 255 VQLV 258 (823)
T ss_pred HHHH
Confidence 5555
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.70 E-value=5.3 Score=50.48 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=80.4
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
...++...+ ++...++.|+..|....+.-++.. .-||..+..|....+..+|.+|.-.|.++|.++++.-..|.
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 344555444 778889999988888887666544 36788899999999999999999999999997644433342
Q ss_pred H-----HHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHh
Q 013085 108 D-----ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (449)
Q Consensus 108 D-----VL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~q 147 (449)
+ -|.++|.+.++.=...+-++|..+.+......+..+..-
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3 567888887765555666666666654444455444433
No 27
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=4.3 Score=46.25 Aligned_cols=348 Identities=18% Similarity=0.203 Sum_probs=181.4
Q ss_pred hHHHHHHHccCCHHHHHHHhhhhhHhhc-----------------cCccchHHHHHHhhhhhcccchhHHHHHhhccccc
Q 013085 33 DYEGIIEAAKTSLKAKQLAAQLIPRFFK-----------------FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (449)
Q Consensus 33 ~y~~Il~~~kg~~k~K~LaAqfI~kffk-----------------~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~l 95 (449)
-|.=++.-+++.+..-.+|-.+|-+=|+ .++...+-+++-+.....|+++-||+.|.=..-.+
T Consensus 69 vyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl 148 (734)
T KOG1061|consen 69 VYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL 148 (734)
T ss_pred HHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 3555555556555544444444333322 35667888999999999999999999887766666
Q ss_pred cccCccc--hhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccC---CCCCChHHHHHHHHHHHhh
Q 013085 96 CKDTPEY--LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV---DEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 96 ck~~~e~--v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~---~~~~~ee~~Re~~l~Fl~~ 170 (449)
-..++++ -.-+.|.|.+|+-.++|..+...-.||..+..++|...+..+-.++... ..+..+|--|--+++++..
T Consensus 149 ~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 149 FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 6666655 4568899999999888888888888999999998853332222121100 0012223344455555543
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHhhccccchH---HHHHHHHHHHhccccCCCCchhHHHHHHHHHHhh--hcccCCC
Q 013085 171 KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGA---EFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ--ADLDAQF 245 (449)
Q Consensus 171 kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~---EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eq--a~Ld~~f 245 (449)
.+-+ +..|++..+..+.-..-+-.++. .-..+|.++..++.+ .+.+.+=+... +-++..
T Consensus 229 y~p~-------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~--------~~~~~~K~~~pl~tlls~~- 292 (734)
T KOG1061|consen 229 YVPK-------DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV--------NELLFKKVAPPLVTLLSSE- 292 (734)
T ss_pred cCCC-------CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH--------HHHHHHHhcccceeeeccc-
Confidence 3211 11233333322222111122332 234556555544221 23333322222 111111
Q ss_pred CCCChhhHH-HHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHH----------HHHHHhhCCCCChhh
Q 013085 246 NVSDADHID-RLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDL----------LKALAEISPYTTPQD 314 (449)
Q Consensus 246 ~~sD~d~vd-rli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~l----------LK~lAE~s~~~~~~d 314 (449)
+..+++- |=|..+-+..|. .-..+.-.|+|+.-=|..-+ ..|+++ =++++|+..||+..|
T Consensus 293 --~e~qyvaLrNi~lil~~~p~----~~~~~~~~Ff~kynDPiYvK---~eKleil~~la~~~nl~qvl~El~eYatevD 363 (734)
T KOG1061|consen 293 --SEIQYVALRNINLILQKRPE----ILKVEIKVFFCKYNDPIYVK---LEKLEILIELANDANLAQVLAELKEYATEVD 363 (734)
T ss_pred --chhhHHHHhhHHHHHHhChH----HHHhHhHeeeeecCCchhhH---HHHHHHHHHHhhHhHHHHHHHHHHHhhhhhC
Confidence 1122222 222333344443 22334445556554442222 233333 356788888887644
Q ss_pred ---HhhhhHHHHHHHHhhCCCCCC------C--CCCcchHHHHHHHHHHHhhhhcCCccccccccc-----ee-------
Q 013085 315 ---SRQILPSVAVLLKKYMPLRKT------G--GEEMNFTYVECLLYTFHHLAHKAPNATNSLCGY-----KI------- 371 (449)
Q Consensus 315 ---a~~~l~~i~~~L~~ymP~~~~------~--~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~-----k~------- 371 (449)
+++-+..|++.-.++=.. .. + ..+-++-.-||..+ +..+.||+|+...++|-+ ..
T Consensus 364 ~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vv-i~dilRkyP~~~~~vv~~l~~~~~sl~epeak 441 (734)
T KOG1061|consen 364 VDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVV-IRDILRKYPNKYESVVAILCENLDSLQEPEAK 441 (734)
T ss_pred HHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHH-HHhhhhcCCCchhhhhhhhcccccccCChHHH
Confidence 566666665554444332 00 0 12334444466554 677899999985544331 11
Q ss_pred -----ecCCCCCCCCcChhhhHHHHHH---------HHHhHHHHHHHHHHH
Q 013085 372 -----VTGQPSDRLGEDFSDCYKDFTE---------RLTTVEDLTRATMKK 408 (449)
Q Consensus 372 -----vTgqpsd~~~ed~~~~~kdF~~---------RLqy~~~~~q~yikk 408 (449)
+-||=+++.. |..+.|++|.+ +|+.+.++++-+.++
T Consensus 442 ~amiWilg~y~~~i~-~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 442 AALIWILGEYAERIE-NALELLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred HHHHHHHhhhhhccC-cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 2344444444 33677777765 566677777666554
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.63 E-value=0.13 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.1
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccc
Q 013085 70 VDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (449)
Q Consensus 70 i~a~lDLcEDed~~IR~qAik~Lp~lck 97 (449)
+..++.+++|+++.||.+|++.|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999998875
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.16 E-value=1.2 Score=51.72 Aligned_cols=91 Identities=24% Similarity=0.272 Sum_probs=66.6
Q ss_pred hHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHH
Q 013085 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (449)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf 145 (449)
...+++.++..++|+|+.||..|++.|..+.. +.....|.++|..+++..+..+=.+|..+....+. ...+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--~~~L~ 690 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--APALR 690 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--hHHHH
Confidence 44577888999999999999999999999853 34667889999888888888777777766432221 12333
Q ss_pred HhhccCCCCCChHHHHHHHHHHHh
Q 013085 146 KHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 146 ~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+. +.++.||..++..|.
T Consensus 691 ~~L~-----~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 691 DHLG-----SPDPVVRAAALDVLR 709 (897)
T ss_pred HHhc-----CCCHHHHHHHHHHHH
Confidence 3333 456789999988775
No 30
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.82 E-value=8.9 Score=43.82 Aligned_cols=134 Identities=16% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccC------CChhhHHHHH
Q 013085 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRG------ASGSKFLNYL 280 (449)
Q Consensus 207 ~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~------v~Stkfv~y~ 280 (449)
.++|.+++.++...+ +- +.-++++|.+-+++=. . .+.=|-.+.|+-..-=+-..+ .....|+.|+
T Consensus 468 ~lLlKlIRNiS~h~~---~~-k~~f~~~i~~L~~~v~---~--~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L 538 (708)
T PF05804_consen 468 PLLLKLIRNISQHDG---PL-KELFVDFIGDLAKIVS---S--GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWL 538 (708)
T ss_pred HHHHHHHHHHHhcCc---hH-HHHHHHHHHHHHHHhh---c--CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHH
Confidence 578899999977532 12 2346777777665421 1 223356777776642221112 2234556666
Q ss_pred HHhhccCCCCCChhhhHHHHHHHHhhCCC--CChhh-HhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhh
Q 013085 281 NKHIIPVFDKLPEERKLDLLKALAEISPY--TTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAH 357 (449)
Q Consensus 281 ~~~VlP~l~~L~e~~kL~lLK~lAE~s~~--~~~~d-a~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~ 357 (449)
.+.+.|... .++..|++.-.++-+|.. |...- ...+++.++++|..+.= +.++ |==++|+|+++-+
T Consensus 539 ~~~L~~g~~--~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-----DdE~----VlQil~~f~~ll~ 607 (708)
T PF05804_consen 539 KDLLKPGAS--EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-----DDEI----VLQILYVFYQLLF 607 (708)
T ss_pred HHHhCCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-----hHHH----HHHHHHHHHHHHc
Confidence 666666433 357899999888877654 22221 23457888888877651 2333 3346799999998
Q ss_pred cCC
Q 013085 358 KAP 360 (449)
Q Consensus 358 k~P 360 (449)
+-+
T Consensus 608 h~~ 610 (708)
T PF05804_consen 608 HEE 610 (708)
T ss_pred ChH
Confidence 844
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.18 E-value=11 Score=42.01 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=87.4
Q ss_pred HHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHH--HHHhhhhhc----ccchhHHHHHhhcc------cccccc
Q 013085 31 VKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA--VDAHLDLIE----EEELGVRVQAIRGL------PLFCKD 98 (449)
Q Consensus 31 ~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~A--i~a~lDLcE----Ded~~IR~qAik~L------p~lck~ 98 (449)
.+-|...=..+..+...=|=+|....|-+|+-+.-+..+ +..++-|.. +-++..|+.-++=| |.+---
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 344444445555555555566777777777665544321 222222222 23666777665544 332111
Q ss_pred CccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHH---ccchhh-----HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 99 TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL---RQDVKA-----SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 99 ~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll---~~d~k~-----tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.|++-+-|.|-++|.-..+.-+.+...+|.+++ +.+|.+ ..+.+-.|.. +.+++++.++|+||.+
T Consensus 204 --~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~-----ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 204 --SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ-----SSEPEIQLKALTWIQE 276 (675)
T ss_pred --hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc-----CCcHHHHHHHHHHHHH
Confidence 467888888888886555444556666555554 344443 6677777777 7789999999999998
Q ss_pred hcccchhhhc
Q 013085 171 KVFPLKAELL 180 (449)
Q Consensus 171 kl~~l~~e~l 180 (449)
-+..-+.+++
T Consensus 277 fV~i~g~~~l 286 (675)
T KOG0212|consen 277 FVKIPGRDLL 286 (675)
T ss_pred HhcCCCcchh
Confidence 8776666665
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.43 E-value=42 Score=36.56 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=72.5
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchH----HHHHHhhhhhcccchhHHHHHhhccccccccCccch
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v 103 (449)
...+-|..|+.... ++..+..-|+..|.+..++.+.++. ..+..+-+++...+..||..++.-+..+|+..++..
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 45677999999888 8899999999999999998887743 126778888888788899999999999999999998
Q ss_pred hhHHH--HHHHHHh
Q 013085 104 SKIVD--ILVQLLA 115 (449)
Q Consensus 104 ~kiaD--VL~QLLq 115 (449)
..+.+ +|.+++.
T Consensus 196 ~~~~~sgll~~ll~ 209 (503)
T PF10508_consen 196 EAVVNSGLLDLLLK 209 (503)
T ss_pred HHHHhccHHHHHHH
Confidence 77775 6666654
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.55 E-value=6.2 Score=37.26 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred cCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.+.++...+-..++|+. ...+.+.|+..+. +.+..+.....|.-+.|-+.|..-+-.+++.-+.+....+|
T Consensus 23 ~r~~al~~L~~l~~~~~-----~~~~~~~~~~~l~----~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNA-----PEDFPPDFVECLR----QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHHH-B----------HHHHHHHH-------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----ccccHHHHHHHHH----HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 55666666666666541 1233444444333 45567777888999999999998888888887777877777
Q ss_pred HHHHHH-h---cchhHHHHHHHHHHHHHHccch--hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccch--hhhc
Q 013085 109 ILVQLL-A---AEEIVERDAVHKALMSLLRQDV--KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK--AELL 180 (449)
Q Consensus 109 VL~QLL-q---tdd~~E~~~V~~sL~~ll~~d~--k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~--~e~l 180 (449)
.+...| . .....-...+.++|.+++..-+ ...+..++.+... +-...+|..++.|+..-+...+ ...+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~----~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK----SKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 665544 2 3334557899999999999877 3333555555442 4456799999999998877776 3444
Q ss_pred CChHHHHHHHHHHHHhhccccchH
Q 013085 181 KPQEEMERHITDLIKKSLEDVTGA 204 (449)
Q Consensus 181 ~~~~E~E~~i~~~ikK~L~dVt~~ 204 (449)
..+ ..-..+...+.+.+.|-.++
T Consensus 170 ~~~-~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 170 QKS-AFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp --H-HHHHHHHHHHHHHHTSS-HH
T ss_pred ccc-chHHHHHHHHHHHCCCCCHH
Confidence 322 12255777788888885543
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=87.49 E-value=6.1 Score=49.96 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=95.6
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccc-hh
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LS 104 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-v~ 104 (449)
.....+.+..+ |+...|+.|+..|..||..=|+.. ..+|--++.|....+..||++|-..|-.+.++..+. ..
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34556666666 889999999999999999888853 356778899999999999999999999888654322 22
Q ss_pred h-----HHHHHHHHHhcchhHHHHHHHHHHHHHHccch-------hhHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 105 K-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 105 k-----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~-------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
+ +.-.|.+||.+.+..-.+..-.+|..+++..- .+.+..|...+. +|.+..|+.+-.=|
T Consensus 689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr-----~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR-----EGTLEGKRNAARAL 759 (2102)
T ss_pred HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH-----hCChHHHHHHHHHH
Confidence 2 44568999998888777887788877776431 122345555555 56666666555433
No 35
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=87.04 E-value=3.4 Score=37.48 Aligned_cols=171 Identities=21% Similarity=0.288 Sum_probs=103.4
Q ss_pred HHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCCh
Q 013085 194 IKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASG 273 (449)
Q Consensus 194 ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~S 273 (449)
++..|..+|...|+.+++-+..+..- ..+.. .+.+++.+.+.|-... .....+-+++.-+....|
T Consensus 4 v~~~lnklt~~n~~~~~~~l~~~~~~--~~~~~-~~~i~~~i~~~a~~~~----~~~~~~a~l~~~l~~~~~-------- 68 (209)
T PF02854_consen 4 VRGILNKLTPSNFESIIDELIKLNWS--DDPET-LKEIVKLIFEKAVEEP----NFSPLYARLCAALNSRFP-------- 68 (209)
T ss_dssp HHHHHHHCSSTTHHHHHHHHHHHHHH--SCHHH-HHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHHCH--------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhh--ccHHH-HHHHHHHHhhhhhcCc----hHHHHHHHHHHHHhccch--------
Confidence 34455556777777666555444332 12333 6889999999876653 335566677776666665
Q ss_pred hhHHHHHHHhhccCCCC------C------ChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcc
Q 013085 274 SKFLNYLNKHIIPVFDK------L------PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMN 341 (449)
Q Consensus 274 tkfv~y~~~~VlP~l~~------L------~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~ 341 (449)
+.|...+.+.+.-.|.. . ...+....++.+||+-.+ +.......+..+..++....+..+ +.-+
T Consensus 69 ~~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~-~vv~~~~i~~~l~~ll~~~~~~~~---~~~~ 144 (209)
T PF02854_consen 69 SEFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNF-GVVSEKIIFDILRELLSDGTDECQ---PPPD 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHTSHHCC---HHTC
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhh-ccccchhHHHHHHHHHhccccccc---CCCc
Confidence 44555554444433333 1 114577899999999654 333334444444444443332111 2356
Q ss_pred hHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHH
Q 013085 342 FTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLT 402 (449)
Q Consensus 342 fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~ 402 (449)
...|||++-.+.+.|++.-..- +. +..+++|..++|......
T Consensus 145 ~~~ie~~~~lL~~~G~~l~~~~------------------~~-~~~l~~~~~~~~~~~~~~ 186 (209)
T PF02854_consen 145 EENIECLCTLLKTCGKKLENSE------------------ES-PKALDEIFERLQKYANSK 186 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH------------------HH-HHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHhcCC------------------Cc-hhHHHHHHHHHHHHHHhh
Confidence 7899999999999998865210 12 688899999998877763
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=16 Score=42.00 Aligned_cols=237 Identities=22% Similarity=0.228 Sum_probs=140.3
Q ss_pred ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHH-
Q 013085 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL- 141 (449)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL- 141 (449)
|+|+.+--+-++-|..---+=||+.||--+-.+|--.||-++---+=|+.=|-.+||....++=+.+.+|-+-||+.-|
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 8888888888888888888888888888888888888888877777788888888888888888888888888888865
Q ss_pred -HHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHH-----h
Q 013085 142 -TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLK-----S 215 (449)
Q Consensus 142 -~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~-----~ 215 (449)
..+|-++.+. ++.-=+=-|+||... .+-++.+.+-+ -+=+-|++.|..- .+ --++.+..+ +
T Consensus 219 LAP~ffklltt---SsNNWmLIKiiKLF~-aLtplEPRLgK---KLieplt~li~sT-----~A-mSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 219 LAPLFYKLLVT---SSNNWVLIKLLKLFA-ALTPLEPRLGK---KLIEPITELMEST-----VA-MSLLYECVNTVVAVS 285 (877)
T ss_pred ccHHHHHHHhc---cCCCeehHHHHHHHh-hccccCchhhh---hhhhHHHHHHHhh-----HH-HHHHHHHHHHheeeh
Confidence 4555566532 222235556666443 55555444321 1112222222210 00 000000000 1
Q ss_pred ccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhh
Q 013085 216 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (449)
Q Consensus 216 l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~ 295 (449)
+....++ +...+.+-... |...+..+|+-- +.|.|+-+..= ..--.++|+-.-+-|+-.+++-++-.
T Consensus 286 ~s~g~~d-----~~asiqLCvqK--Lr~fiedsDqNL--KYlgLlam~KI----~ktHp~~Vqa~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 286 MSSGMSD-----HSASIQLCVQK--LRIFIEDSDQNL--KYLGLLAMSKI----LKTHPKAVQAHKDLILRCLDDKDESI 352 (877)
T ss_pred hccCCCC-----cHHHHHHHHHH--HhhhhhcCCccH--HHHHHHHHHHH----hhhCHHHHHHhHHHHHHHhccCCchh
Confidence 1111111 12222222222 211222222211 44554433210 12234566666677888888888889
Q ss_pred hHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCC
Q 013085 296 KLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPL 332 (449)
Q Consensus 296 kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~ 332 (449)
|++-|.++=.|.+ ..++-.|...|..++=.
T Consensus 353 RlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 353 RLRALDLLYGMVS-------KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred HHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHh
Confidence 9999999988854 67777788888888854
No 37
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=85.82 E-value=3.1 Score=47.68 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~ 122 (449)
-+.+.|||.==-+-+|-|.-|+++=.|+|++.+=.+|.++-||-.|||.+..+ +. ++.+.-+.|-+.|+|....+-.+
T Consensus 67 rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~-~el~~~~~~~ik~~l~d~~ayVR 144 (757)
T COG5096 67 RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RV-KELLGNIIDPIKKLLTDPHAYVR 144 (757)
T ss_pred cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHHHccCCcHHHH
Confidence 56778888888888888888888888999988888888888888888888877 33 36677777777777777777666
Q ss_pred HHHHHHHHHHHccchhhHHH
Q 013085 123 DAVHKALMSLLRQDVKASLT 142 (449)
Q Consensus 123 ~~V~~sL~~ll~~d~k~tL~ 142 (449)
..+--|+..+++.|+.--..
T Consensus 145 k~Aalav~kly~ld~~l~~~ 164 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHE 164 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhc
Confidence 66666677777666654443
No 38
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=84.55 E-value=31 Score=31.29 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=91.8
Q ss_pred hhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhh
Q 013085 196 KSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSK 275 (449)
Q Consensus 196 K~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stk 275 (449)
..+..+|..-++.+.+=|..+.. ..+.. .+.++..+.+.+--.. .....+-+++.-+....| .-+..
T Consensus 6 ~~lnkLs~~n~~~~~~~l~~~~~---~~~~~-~~~l~~~i~~~~~~~~----~~~~~ya~L~~~l~~~~~-----~f~~~ 72 (200)
T smart00543 6 GLINKLSPSNFESIIKELLKLNN---SDKNL-RKYILELIFEKAVEEP----NFIPAYARLCALLNAKNP-----DFGSL 72 (200)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHc---cCHHH-HHHHHHHHHHHHHcCc----chHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34444565556555433333322 12323 5788888888866442 334555666665555443 22344
Q ss_pred HHHHHHHhhccCCCCCC---hhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHH
Q 013085 276 FLNYLNKHIIPVFDKLP---EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTF 352 (449)
Q Consensus 276 fv~y~~~~VlP~l~~L~---e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyaf 352 (449)
+++++.+.+-..+.... -.....+++.+||+..+ +...... +++.+...+......+..-..-.|||++..+
T Consensus 73 ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~-~~i~~~~----i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL 147 (200)
T smart00543 73 LLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNF-QVLTSKI----ILELLKELLNDLTKLDPPRSDFSVECLLSLL 147 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHc-ccCcHHH----HHHHHHHHHhccCCCCCCCcHHHHHHHHHHH
Confidence 44444444333211111 13456889999999665 3333232 3334444333222212224567999999999
Q ss_pred HhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHH
Q 013085 353 HHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 401 (449)
Q Consensus 353 H~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~ 401 (449)
.+.|..-=. + ++ ++.+++|..++|..-..
T Consensus 148 ~~~G~~l~~-----------~--------~~-~~~~~~~l~~l~~~~~~ 176 (200)
T smart00543 148 PTCGKDLER-----------E--------KS-PKLLDEILERLQDYLLK 176 (200)
T ss_pred HHhhHHHcC-----------c--------cc-HHHHHHHHHHHHHHHhc
Confidence 988776432 0 23 67899999998876543
No 39
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.46 E-value=75 Score=35.61 Aligned_cols=344 Identities=16% Similarity=0.219 Sum_probs=157.4
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.++++-.++|... .+..+.+=|=.-||.+.|+=|++-.+..|.+.-|.--||+.-+..+=+.|..+-+-+|. .-+..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~ 134 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--GTLTG 134 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--HHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--HHHHH
Confidence 4577899999999 88999999999999999999999999999999999999988888888888888887763 33567
Q ss_pred HHHHHHh---cchhHHHHHHHHHHHHHHccchhhHHH-------HHHHhhccCCCCCChHHHHHHHHHHHhh-hcccchh
Q 013085 109 ILVQLLA---AEEIVERDAVHKALMSLLRQDVKASLT-------ALFKHIGSVDEPSTDEFIREKVLSFIRD-KVFPLKA 177 (449)
Q Consensus 109 VL~QLLq---tdd~~E~~~V~~sL~~ll~~d~k~tL~-------~lf~qI~~~~~~~~ee~~Re~~l~Fl~~-kl~~l~~ 177 (449)
++.|++. +|+. -++-+=+-|...+..=+.+.++ -+..+|...=+--..++. +.++.+|.. +++.-.
T Consensus 135 lf~~i~~~~~~de~-~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF-~l~m~lL~~lk~~~~~- 211 (556)
T PF05918_consen 135 LFSQIESSKSGDEQ-VRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEF-ELFMSLLKSLKIYGGK- 211 (556)
T ss_dssp HHHHHH---HS-HH-HHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHH-HHHHHHHHTSGG---G-
T ss_pred HHHHHHhcccCchH-HHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHhCcccccc-
Confidence 8899984 3332 2222222232323211222111 122222210000000110 122233321 221000
Q ss_pred hhcCChHHHHHHHHHHHHhhcc---ccc-hHHHHHHHHHHH-hccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhh
Q 013085 178 ELLKPQEEMERHITDLIKKSLE---DVT-GAEFRMFMDFLK-SLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (449)
Q Consensus 178 e~l~~~~E~E~~i~~~ikK~L~---dVt-~~EF~l~m~lL~-~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~ 252 (449)
.-.....++-+.|.+... |. +++ .+=++.|+..+. .++.|.... +-.+++.++.++. |. .|+--+.+.
T Consensus 212 ~t~~g~qeLv~ii~eQa~--Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v---~Sskfv~y~~~kv-lP-~l~~l~e~~ 284 (556)
T PF05918_consen 212 QTIEGRQELVDIIEEQAD--LDQPFDPSDPESIDRLISCLRQALPFFSRGV---SSSKFVNYMCEKV-LP-KLSDLPEDR 284 (556)
T ss_dssp SSHHHHHHHHHHHHHHHT--TTS---SSSHHHHHHHHHHHHHHGGG-BTTB-----HHHHHHHHHHT-CC-CTT-----H
T ss_pred CChHHHHHHHHHHHHHhc--cCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC---ChHHHHHHHHHHh-cC-ChhhCChHH
Confidence 000011234444444321 11 222 222334544333 466664432 3478999999982 21 232222222
Q ss_pred HHHHHHHHHHhhhhhccCCChhhHHHHHHHhh---ccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085 253 IDRLISCLYMALPFFLRGASGSKFLNYLNKHI---IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 253 vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~V---lP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y 329 (449)
==+|+..+-.+.||....- +..++..+-+.+ +|.=.. .++.+.. --+++-..|..|...
T Consensus 285 kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~-~~~l~fs----------------~vEcLL~afh~La~k 346 (556)
T PF05918_consen 285 KLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKT-EPKLQFS----------------YVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-----------HH----------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCC-CCcccch----------------HhhHHHHHHHHHhhh
Confidence 2267777777788876555 777776666554 551110 1111111 233444555566655
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHHHHHH---
Q 013085 330 MPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATM--- 406 (449)
Q Consensus 330 mP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~q~yi--- 406 (449)
-|. ++--.|....-+ =.|.... +-.-++++ .||-.||.=|-.+.|-.-...+..+
T Consensus 347 ~p~---------~~~~lCgyk~vt----gQpsd~~--------~~~~~~~~-kdf~~RL~yl~~~~q~yikkl~~~l~~~ 404 (556)
T PF05918_consen 347 SPN---------SLNFLCGYKIVT----GQPSDRY--------GEDDAEKL-KDFRERLQYLARGTQAYIKKLKQALSEH 404 (556)
T ss_dssp -TH---------HHH---------------------------------TTT-HHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred Ccc---------hhhhHhhhcccc----ccccccc--------ccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 542 111112211111 1122110 00112223 3889999999999998888888888
Q ss_pred -HHHHHHHhhhhhhHhhhcchh
Q 013085 407 -KKLTQGLADHNKEMAAAKTDE 427 (449)
Q Consensus 407 -kkL~~~l~~~~K~~~~~ktee 427 (449)
|++..+.+ ||+.+++|+|+
T Consensus 405 ~k~~~~~k~--~k~~~~lk~~~ 424 (556)
T PF05918_consen 405 NKAMSAAKT--DKTKAELKTEE 424 (556)
T ss_dssp --------T--T--CCHHCSHH
T ss_pred cccccccCC--ccchHHHHHHH
Confidence 66666656 67787877774
No 40
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=84.17 E-value=5 Score=37.00 Aligned_cols=114 Identities=25% Similarity=0.227 Sum_probs=91.6
Q ss_pred cCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.+.+.|...|.....-.-.=.+|+.++..+....|.+ ..+.....+++.=+|+.|+-.+-...+. ..++..+-+
T Consensus 71 ~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~ 144 (197)
T cd06561 71 EDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLE 144 (197)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 5667777777755555666778888888888888877 6778899999999999998888777665 357888889
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 109 VL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
++..++..++.-...+|-++|.++.+.||..++.-+-.+.
T Consensus 145 ~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~ 184 (197)
T cd06561 145 IIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG 184 (197)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 9999999888888889999999999998887776665543
No 41
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=83.36 E-value=11 Score=37.88 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=48.5
Q ss_pred hhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccch
Q 013085 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (449)
Q Consensus 76 LcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~ 137 (449)
-..-.|..||..|++-|-.+|-=++++......++.+.++.++..-...+=+++..++....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 34567789999999999999999999999999999999987755555565666666665544
No 42
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=83.26 E-value=3.4 Score=38.59 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=65.5
Q ss_pred HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHH
Q 013085 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (449)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~ 146 (449)
+.+..-+...++++++-+|+.|+-.+-...+. .+...+-+++..++.+++.--..+|-++|.++.+.||..+..-|-.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45666778899999999999999888888777 6788888899988988888888899999999999998877776666
Q ss_pred hh
Q 013085 147 HI 148 (449)
Q Consensus 147 qI 148 (449)
+.
T Consensus 197 ~~ 198 (213)
T PF08713_consen 197 NS 198 (213)
T ss_dssp S-
T ss_pred Cc
Confidence 54
No 43
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.76 E-value=18 Score=36.36 Aligned_cols=177 Identities=17% Similarity=0.275 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHH--HHHHHHHHhccccCCCCchhHHHHHH
Q 013085 155 STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF--RMFMDFLKSLSLFGEKAPTERMKELI 232 (449)
Q Consensus 155 ~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF--~l~m~lL~~l~~~~~~~p~~~~qeLv 232 (449)
++|+.+|+|.+.+|++=+..++++.+. .+++ ..+++-...-|.|.....- .-+-.+ -.++.+ +.+..+.++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~-~~ev-~~L~~F~~~rl~D~~~~~~~l~gl~~L-~~~~~~----~~~~~~~i~ 82 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLS-RQEV-QVLLDFFCSRLDDHACVQPALKGLLAL-VKMKNF----SPESAVKIL 82 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhcc-HHHH-HHHHHHHHHHhccHhhHHHHHHHHHHH-HhCcCC----ChhhHHHHH
Confidence 667789999999999999999988885 3454 4444444444455433322 222232 244444 334456777
Q ss_pred HHHHhhhcccCCCCCCChhhHHHHHHHHHHh-hhhhccCCChhhHHHHHHHhhccCCCCCChh--hhHHHHHHHHhhCCC
Q 013085 233 GIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPFFLRGASGSKFLNYLNKHIIPVFDKLPEE--RKLDLLKALAEISPY 309 (449)
Q Consensus 233 ~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~A-lP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~--~kL~lLK~lAE~s~~ 309 (449)
+.+....+.. .+..++.-.+=+++.++-.. .... ..-+..|+.-++..+=. .+=|.. .=.++++.+..--+
T Consensus 83 ~~l~~~~~~q-~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 83 RSLFQNVDVQ-SLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHhCChh-hhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc-
Confidence 7777654442 12112111111233322111 0000 12234555555543222 000111 11245555444333
Q ss_pred CChhhHhhhhHHHHHHHHhhCCC---CCCCCC------CcchHHHHHHH
Q 013085 310 TTPQDSRQILPSVAVLLKKYMPL---RKTGGE------EMNFTYVECLL 349 (449)
Q Consensus 310 ~~~~da~~~l~~i~~~L~~ymP~---~~~~~~------~l~fs~VEcLL 349 (449)
..+..+.+|+.+.-|.|- ||.+++ +|.-+.-+|+-
T Consensus 157 -----~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~ 200 (262)
T PF14500_consen 157 -----ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS 200 (262)
T ss_pred -----cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc
Confidence 366788899999999997 565444 57777788875
No 44
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.68 E-value=8.7 Score=41.83 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=88.4
Q ss_pred chhhHHHHHHHHHhh--hhhhccccc----------------------cCHHhHHHHHHHccCC---HHHHHHHhhhh--
Q 013085 5 SDEAKQIEKLYEFGE--RLNEAKDKS----------------------QNVKDYEGIIEAAKTS---LKAKQLAAQLI-- 55 (449)
Q Consensus 5 ~~~~~~ie~LY~~~~--~L~~akd~~----------------------~~~~~y~~Il~~~kg~---~k~K~LaAqfI-- 55 (449)
-||...|++||..|- .+.....-. ....--+.+.+|..|+ .+.|.++-|||
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~ 347 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRG 347 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhc
Confidence 478888999999997 211110000 1122234444555544 79999999999
Q ss_pred -hHhhccCccch-----HHHHHHhhhhhc--------ccchhHHHHHhhccccccccCccchhhHHHHHHHHHh---cch
Q 013085 56 -PRFFKFFPDLS-----SRAVDAHLDLIE--------EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA---AEE 118 (449)
Q Consensus 56 -~kffk~FP~L~-----e~Ai~a~lDLcE--------Ded~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq---tdd 118 (449)
..=+++++.-. .--++....+.+ -++...|..||..|-.++|..|..+.+-.+++..|.. .++
T Consensus 348 ~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~ 427 (501)
T PF13001_consen 348 SSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDES 427 (501)
T ss_pred chHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcc
Confidence 88888888633 333445556663 2466789999999999999999999777778877765 344
Q ss_pred hHHHHHHHHHHHHHHc
Q 013085 119 IVERDAVHKALMSLLR 134 (449)
Q Consensus 119 ~~E~~~V~~sL~~ll~ 134 (449)
+.-+..|..||.++..
T Consensus 428 ~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 428 PEVRVSIQEALSSLAP 443 (501)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4446677777776653
No 45
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=82.49 E-value=8.3 Score=44.32 Aligned_cols=87 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred CccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH--HHHHHHHHhcchhHHHHHHHHHHHHHHccchh-
Q 013085 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI--VDILVQLLAAEEIVERDAVHKALMSLLRQDVK- 138 (449)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki--aDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k- 138 (449)
=|++.+.+++++.++.+|...-||+.|+=++-.+-+-+|+++.-. .|+|.-|++..||. ++.+||.++..+||.
T Consensus 121 ~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~---Vi~nAl~sl~~i~~e~ 197 (757)
T COG5096 121 VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPI---VIANALASLAEIDPEL 197 (757)
T ss_pred hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCch---HHHHHHHHHHHhchhh
Confidence 478889999999999999999999999999999998888887766 66677666666664 578899999988887
Q ss_pred --hHHHHHHHhhccC
Q 013085 139 --ASLTALFKHIGSV 151 (449)
Q Consensus 139 --~tL~~lf~qI~~~ 151 (449)
+-++.++.+|-..
T Consensus 198 a~~~~~~~~~~i~~l 212 (757)
T COG5096 198 AHGYSLEVILRIPQL 212 (757)
T ss_pred hhhHHHHHHHHhhhc
Confidence 4456677776643
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.84 E-value=1.7 Score=32.36 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHHHhhccccccccCccc----hhhHHHHHHHHHhcchh
Q 013085 84 VRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEEI 119 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~----v~kiaDVL~QLLqtdd~ 119 (449)
||.+|+..|-.++...++. ++.+...|..+|+.+++
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~ 42 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD 42 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5555555555444333332 44555555555554444
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.38 E-value=2.3 Score=31.58 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhHhhccCccchH----HHHHHhhhhhcccchhHHHHHhhcccc
Q 013085 46 KAKQLAAQLIPRFFKFFPDLSS----RAVDAHLDLIEEEELGVRVQAIRGLPL 94 (449)
Q Consensus 46 k~K~LaAqfI~kffk~FP~L~e----~Ai~a~lDLcEDed~~IR~qAik~Lp~ 94 (449)
.+++-|+..|.+.-..-|+... +++..+.++.+|++..||..|...|-+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5677788888887667776665 788888999999999999999988754
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=66 Score=37.23 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=42.4
Q ss_pred hhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHH
Q 013085 73 HLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE 121 (449)
Q Consensus 73 ~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E 121 (449)
+=-||||.|++.+--|.=++..+.|-+|..|+..=|+..++|.-.|+.-
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESI 352 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchh
Confidence 3357899999999999999999999999999999999999997544443
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.48 E-value=21 Score=33.67 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=65.0
Q ss_pred HHHHHHHhhhhhHhh----ccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH-HHHHHHHHhcchh
Q 013085 45 LKAKQLAAQLIPRFF----KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-VDILVQLLAAEEI 119 (449)
Q Consensus 45 ~k~K~LaAqfI~kff----k~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki-aDVL~QLLqtdd~ 119 (449)
.++=+.|.++|...+ ++|....+.-+..+++.+-|....||..|...|-.+|+..+ +.+++ ..++.+.++.-.+
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCH
Confidence 334445555555444 56777889999999999999999999999999999998765 56788 8888999998888
Q ss_pred HHHHHHHHHHHHHHccch
Q 013085 120 VERDAVHKALMSLLRQDV 137 (449)
Q Consensus 120 ~E~~~V~~sL~~ll~~d~ 137 (449)
.-+..+-+.|..++..-+
T Consensus 146 ~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 888888888887776655
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.35 E-value=1.6e+02 Score=34.44 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHhhccccccccCccchhhHHHHHHHHHh-cchhHH--HHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA-AEEIVE--RDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E--~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
+.++.+|=|.-+.+++++.=....|||+|+.- ||...- -.+.-.++.+++.++|++.|.++--.|.
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiL 318 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINIL 318 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 55666666666666666666666777777763 444332 2345566777777777776666655544
No 51
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.49 E-value=5.1 Score=36.02 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHHHccCCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 013085 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (449)
Q Consensus 34 y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~l 95 (449)
.-.||+.+ .++.+--.|+.=|..|.+++|.-..- |-..++.|...+|+.||.+|++.+-.+
T Consensus 48 L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 48 LIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444333 37888889999999999999995433 346789999999999999999876443
No 52
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=74.36 E-value=42 Score=32.29 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHH
Q 013085 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (449)
Q Consensus 34 y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QL 113 (449)
|...+.-...=.-+=.+|..++..|+.+.|.+ ...+..++.|++.=.|+.||=..-.+.+.+ ....+-++...+
T Consensus 85 ~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~--~~~~l~~~~~~~ 158 (208)
T cd07064 85 LEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRRTAILHQLKYKEKT--DTDLLFEIILAN 158 (208)
T ss_pred HHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHh
Confidence 44444433222444557777777777776654 567888999999998888886655554432 234555556667
Q ss_pred HhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 114 Lqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
+.+++.=-..+|-.+|.++-+-||..+..=+-.|.
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~~ 193 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAHK 193 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHhh
Confidence 77777666778888899999988886666555553
No 53
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.95 E-value=32 Score=41.08 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=93.1
Q ss_pred HHHHHHhhhhhcccchhHHHHHhhccccccccCccc-----hhhHHHHHHHHHh-cchhHHHHHHHHHHHHHHccchhhH
Q 013085 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLA-AEEIVERDAVHKALMSLLRQDVKAS 140 (449)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-----v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~ll~~d~k~t 140 (449)
++.++.++-...|.++-||-.|..+|++++.|=.-. -.++-+-|...|- ++.+..-...-.+|..++---+|.-
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 356788899999999999999999999999885433 4556666777775 5556777788889999999999999
Q ss_pred HHHHHHhhccC----CCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHH
Q 013085 141 LTALFKHIGSV----DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF 209 (449)
Q Consensus 141 L~~lf~qI~~~----~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~ 209 (449)
++.-+++|... -.-++..-+||-+++=|..--..-..... .-=..+...++++|+..+.+|...+
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~----pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI----PYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH----hHHHHHHHHHHHHHhCCCchhhHHH
Confidence 99988888731 01134445777666544321111100000 0112345667778887777777654
No 54
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=42 Score=40.11 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=52.8
Q ss_pred hhhhhHhhccCccchHHHHHHhhhh-hcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhc
Q 013085 52 AQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (449)
Q Consensus 52 AqfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt 116 (449)
---|+++++.||.+.+.-||-++-= .=-=|+.||-+|=.+|-.+..-.|+|.+ .++|.+||-+
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a--~~~L~~lld~ 590 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA--DYVLPPLLDS 590 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc--ccchhhhhhh
Confidence 3568999999999999999988754 4456788999999999999999998876 3579999964
No 55
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=73.28 E-value=15 Score=40.23 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhccc---chhHHHHHhhccccccccCccchhhHHHHHHHHH-hcch
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE---ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL-AAEE 118 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDe---d~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLL-qtdd 118 (449)
++...+.++=+-|..-- . ..+++.+.-+++++ +..||.+||.+|..+.+..| .++-++|.+++ +..+
T Consensus 502 ~~~~~~~~~LkaLgN~g--~----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLG--H----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTTE 572 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TTS
T ss_pred cCHHHHHHHHHHhhccC--C----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCCC
Confidence 45555555444443321 1 35788888888888 67799999999998866544 57778898888 4566
Q ss_pred hHHHHHHHHHHHHHHccchhhHH-HHHHHhh
Q 013085 119 IVERDAVHKALMSLLRQDVKASL-TALFKHI 148 (449)
Q Consensus 119 ~~E~~~V~~sL~~ll~~d~k~tL-~~lf~qI 148 (449)
+.|+-++ |+..+++.+|-.+. ..|...+
T Consensus 573 ~~EvRia--A~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 573 DPEVRIA--AYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp -HHHHHH--HHHHHHHT---HHHHHHHHHHH
T ss_pred ChhHHHH--HHHHHHhcCCCHHHHHHHHHHH
Confidence 6664432 68888888776544 4444333
No 56
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.08 E-value=59 Score=34.33 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhhccCCChh----hHHHHHHHhhccCCC-CCC--hhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHH
Q 013085 255 RLISCLYMALPFFLRGASGS----KFLNYLNKHIIPVFD-KLP--EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK 327 (449)
Q Consensus 255 rli~Cl~~AlP~fS~~v~St----kfv~y~~~~VlP~l~-~L~--e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~ 327 (449)
+++.|+..-.---+.|+.++ .+..|+.++|+|-|. +.+ +=.|.+-+|.++-....-+ .+.+..+++.|.
T Consensus 277 ~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~ 352 (370)
T PF08506_consen 277 YLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLV 352 (370)
T ss_dssp HHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHH
Confidence 45554443322223355554 789999999999777 221 2347777777777755433 445666777777
Q ss_pred hhCCC
Q 013085 328 KYMPL 332 (449)
Q Consensus 328 ~ymP~ 332 (449)
..+..
T Consensus 353 ~~L~~ 357 (370)
T PF08506_consen 353 NHLQS 357 (370)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 77754
No 57
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=71.06 E-value=77 Score=32.98 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=50.7
Q ss_pred HHHHH-HHHhhhhhhccccccCHHhH-HHHHHHccCCHHHHHHHhhhhhH-hhc-cCccchHHHHHHhhhhhcccchhH
Q 013085 10 QIEKL-YEFGERLNEAKDKSQNVKDY-EGIIEAAKTSLKAKQLAAQLIPR-FFK-FFPDLSSRAVDAHLDLIEEEELGV 84 (449)
Q Consensus 10 ~ie~L-Y~~~~~L~~akd~~~~~~~y-~~Il~~~kg~~k~K~LaAqfI~k-ffk-~FP~L~e~Ai~a~lDLcEDed~~I 84 (449)
.++.+ .++++.+...+.-.....+| +.+|..+-|..+++.+-..+-+. -.+ .|..|+.---..+.+++.+|-+++
T Consensus 56 ~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~EhPQ~ 134 (338)
T TIGR00207 56 QKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQEHPQT 134 (338)
T ss_pred HHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHccCHHH
Confidence 34444 45566664444333555677 89999999988888776665443 344 377777777788889999998774
No 58
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=69.80 E-value=16 Score=33.27 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=36.2
Q ss_pred cChhhhHHHHHHH-------HHhHHHHHHHHHHHHHHHHhhhhhhHhhhcchhhHHHHHHh
Q 013085 382 EDFSDCYKDFTER-------LTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSL 435 (449)
Q Consensus 382 ed~~~~~kdF~~R-------Lqy~~~~~q~yikkL~~~l~~~~K~~~~~kteenk~kv~~~ 435 (449)
+.+.+++.||-.| |.|+.+|.|.+=|.+-+.|.+++ .++.+..+...+
T Consensus 54 ~~~~e~L~eFaer~VqlGwpL~flT~GL~~F~kvvy~~m~~~~------~~~~~~~e~~~e 108 (129)
T PF08678_consen 54 EEFEERLDEFAERVVQLGWPLKFLTKGLQEFRKVVYETMNEEE------IDDQQSSELFWE 108 (129)
T ss_dssp STTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHT--------TT--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHH
Confidence 3568999999999 89999999999999999997542 455666665444
No 59
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=69.47 E-value=26 Score=37.52 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=62.3
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
+++++++..+|.+.+||..+.++|-.+-. +...+.|..+|.+++|.-+..+=.+ ......||-..+..+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~~~p~vR~aal~a-l~~r~~~~~~~L~~~L--- 156 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------RQAEPWLEPLLAASEPPGRAIGLAA-LGAHRHDPGPALEAAL--- 156 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcCCChHHHHHHHHH-HHhhccChHHHHHHHh---
Confidence 59999999999999999999999987732 4577789999999998766544433 3334455555444444
Q ss_pred ccCCCCCChHHHHHHHHHHHh
Q 013085 149 GSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 149 ~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
. ..+..||..++.-|.
T Consensus 157 ~-----d~d~~Vra~A~raLG 172 (410)
T TIGR02270 157 T-----HEDALVRAAALRALG 172 (410)
T ss_pred c-----CCCHHHHHHHHHHHH
Confidence 2 455679987776663
No 60
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.21 E-value=16 Score=41.84 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=88.6
Q ss_pred HHHHHHHhhhhhhccccc--cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCcc----chHHHHHHhhhhhcccchh
Q 013085 11 IEKLYEFGERLNEAKDKS--QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD----LSSRAVDAHLDLIEEEELG 83 (449)
Q Consensus 11 ie~LY~~~~~L~~akd~~--~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~----L~e~Ai~a~lDLcEDed~~ 83 (449)
++-+-++.+-|-+. |+. -...-|.-+|.|.. .+.+++-=..|.|.+---.=-. +.+.-+.+++-=.-|.++.
T Consensus 63 l~fla~fv~sl~q~-d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 63 LSFLARFVESLPQL-DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHHhhhcc-CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence 44444455444322 111 23344677888888 7788888888999887763333 4444455666667899999
Q ss_pred HHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
||+||+..|..+=-+.++-==+|+-+|.-++|-|-+.| |+.|.++-+..|++ |+.-+.--.
T Consensus 142 VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~E---VRRaaLsnI~vdns-Tlp~IveRa 202 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDE---VRRAALSNISVDNS-TLPCIVERA 202 (892)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHH---HHHHHHHhhccCcc-cchhHHHHh
Confidence 99999999998863333333347778899999888888 67788887777764 555444433
No 61
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=67.43 E-value=8.5 Score=35.76 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhh------------hcccCCCCCCChhh
Q 013085 185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ------------ADLDAQFNVSDADH 252 (449)
Q Consensus 185 E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eq------------a~Ld~~f~~sD~d~ 252 (449)
+..++|=.++...+.+.|++|-..+.++++.-..|.+ -.++++.+-+. ..+...++..+|++
T Consensus 5 ~~k~~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~------~de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~pea 78 (154)
T PF05823_consen 5 EYKELIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKN------EDEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPEA 78 (154)
T ss_dssp HHHTT--HHHHHHHHH--TTTHHHHHHHHTT-------------TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HHH
T ss_pred HHHHhCcHHHHHHHHcCCHHHHHHHHHHHHHccccCC------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3344444455555556677777777777766655532 12223222222 11334567777776
Q ss_pred HHHHHHHHHHhhhhh---ccCC-ChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhH
Q 013085 253 IDRLISCLYMALPFF---LRGA-SGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILP 320 (449)
Q Consensus 253 vdrli~Cl~~AlP~f---S~~v-~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~ 320 (449)
-.-+-..+..++-.+ +.|- .+..-+..+.+.++..+..|+++.|-+|-+.|-++..+......+.++.
T Consensus 79 k~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~k~~~~~~ 150 (154)
T PF05823_consen 79 KAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIASFLQNDKFQALIK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchhhhhhhhhhhccc
Confidence 653333333433222 2232 2334566777788899999999999999999999999877555544443
No 62
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=66.31 E-value=12 Score=32.16 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=39.6
Q ss_pred hHHHHHHhhhhhcccchhHHHHHhhccccccccCccc----hhhHHHHHHHHHhcch
Q 013085 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEE 118 (449)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~----v~kiaDVL~QLLqtdd 118 (449)
-++-+.-++....|+|..||-.|...|-+++|..++- ...|=|+|.++..--|
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3466888899999999999999999999999875432 3555666666665333
No 63
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=65.25 E-value=44 Score=33.48 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=79.7
Q ss_pred CHHhHHHHHHHcc--CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccc
Q 013085 30 NVKDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY 102 (449)
Q Consensus 30 ~~~~y~~Il~~~k--g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~ 102 (449)
..+.++.++..-+ .++-.++.|---++. ...||.-++- ++.-+.++..+.++.||.+|+..|-.++-+. +.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-EN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hh
Confidence 3445555555444 233344433333444 3567755553 4566889999999999999999999887654 67
Q ss_pred hhhHHHHHHHHHh---cc-hhHHHHH-HHHHHHHHHccch------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 103 LSKIVDILVQLLA---AE-EIVERDA-VHKALMSLLRQDV------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 103 v~kiaDVL~QLLq---td-d~~E~~~-V~~sL~~ll~~d~------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+|-..+.|++. +. -.+++.. .-+.|..+ ..+. ...+..++.-+. +|++.+|..+++.|.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~-----~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLS-----SGSEKTKVQVLKVLV 159 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 6777777777775 22 1233322 22333322 1111 234566775554 778889999998876
No 64
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=63.18 E-value=23 Score=35.41 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=56.1
Q ss_pred HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHH
Q 013085 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (449)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~ 146 (449)
..++..+..+++|.+..||..|+.+|..+.-++ .-+++.+.+.++.++...+.. ++..+-.++.......+..
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~---~~~~l~~~~~~~~~~~l~~ 251 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKA---ALLALGEIGDEEAVDALAK 251 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHH---HHHHhcccCcchhHHHHHH
Confidence 457778888899999999999999999997665 346677888887776555443 5566666666777777777
Q ss_pred hhc
Q 013085 147 HIG 149 (449)
Q Consensus 147 qI~ 149 (449)
.+.
T Consensus 252 ~l~ 254 (335)
T COG1413 252 ALE 254 (335)
T ss_pred HHh
Confidence 665
No 65
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=3e+02 Score=32.24 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.1
Q ss_pred HHHHHccCCHHHHHHHhhhhhHhhccCccchH
Q 013085 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSS 67 (449)
Q Consensus 36 ~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e 67 (449)
.||-+.....-+|+=||=-+-|-|+.+||+..
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 55656666678888899889999999988764
No 66
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=61.09 E-value=12 Score=28.06 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh
Q 013085 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (449)
Q Consensus 101 e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~ 139 (449)
+|++- |+.|.|.++++.+...+=.++.++|+.+|..
T Consensus 6 eYLKN---vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 6 EYLKN---VLLQFLESREPSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHH---HHHHHHTTSS---HHHHHHHHHHHTT--HHH
T ss_pred HHHHH---HHHHHhcCCchhhHHHHHHHHHHHHCCCHHH
Confidence 55553 4899999999999998889999999998874
No 67
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=59.93 E-value=1.9e+02 Score=28.94 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=70.8
Q ss_pred ccCHHhHHHHHHHcc---C----CHHHHHHHhhhhhHhhcc--CccchHHHHHHh---hh-hhcccchhHHHHHhhcc--
Q 013085 28 SQNVKDYEGIIEAAK---T----SLKAKQLAAQLIPRFFKF--FPDLSSRAVDAH---LD-LIEEEELGVRVQAIRGL-- 92 (449)
Q Consensus 28 ~~~~~~y~~Il~~~k---g----~~k~K~LaAqfI~kffk~--FP~L~e~Ai~a~---lD-LcEDed~~IR~qAik~L-- 92 (449)
..+..-+..|++... . ....+++...++.+|.+. ...+++...+.+ ++ +-+|.+..+|...-+.+
T Consensus 138 ~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~ 217 (367)
T PF04286_consen 138 EQHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRE 217 (367)
T ss_pred cchHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHH
Confidence 345555555554333 2 233566777777777655 344555555552 22 33377777776655542
Q ss_pred -ccccccCccchhhHHHHHHHHHhcchhHHH-HHHHHHHHHHHccchhh------HH----HHHHHhhccCCCCCChHHH
Q 013085 93 -PLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDVKA------SL----TALFKHIGSVDEPSTDEFI 160 (449)
Q Consensus 93 -p~lck~~~e~v~kiaDVL~QLLqtdd~~E~-~~V~~sL~~ll~~d~k~------tL----~~lf~qI~~~~~~~~ee~~ 160 (449)
..--..+|++..++.....++|......+. +.+-..+...+.-+... .+ ..+.+.+. +++.+
T Consensus 218 ~i~~L~~d~~~~~~i~~~~~~~l~~~~~~~~~~~l~~~l~~~i~~~l~~~~~i~~~i~~~l~~~~~~l~------~~~~l 291 (367)
T PF04286_consen 218 LIERLLTDPELREKIEELKDKLLSELILEEFLEELWDSLREWIKEDLSREEFIEQIISELLEELIDKLK------EDPEL 291 (367)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh------cCHHH
Confidence 222244556777777777777754332221 11222333333222211 12 22233332 33677
Q ss_pred HHHHHHHHhhhccc
Q 013085 161 REKVLSFIRDKVFP 174 (449)
Q Consensus 161 Re~~l~Fl~~kl~~ 174 (449)
|+++..|+...+..
T Consensus 292 ~~~i~~~i~~~l~~ 305 (367)
T PF04286_consen 292 REKINRFIENLLER 305 (367)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777765443
No 68
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.78 E-value=6.2 Score=27.79 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccc
Q 013085 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (449)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAik~Lp~lck 97 (449)
-++..+++|..+.|..||.+|...|..+|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467788999999999999999988887764
No 69
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.70 E-value=1.5e+02 Score=31.37 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=60.6
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHH-----hhh-hhcccchhHHHHHhhccccccccCccchhhH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA-----HLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSKI 106 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a-----~lD-LcEDed~~IR~qAik~Lp~lck~~~e~v~ki 106 (449)
....+...+ +++..+.+||+.|..-+..=|.-|+.+|+. ++- |--|.+..+|.+|.-++..+-|.++-=+.+.
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455667 889999999999999999999999998874 222 2356677789999999999988876432221
Q ss_pred -----HHHHHHHHhc
Q 013085 107 -----VDILVQLLAA 116 (449)
Q Consensus 107 -----aDVL~QLLqt 116 (449)
..+|--.||+
T Consensus 206 l~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQS 220 (342)
T ss_pred HhcCCHHHHHHHHHc
Confidence 3455555555
No 70
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.87 E-value=1e+02 Score=36.45 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=67.8
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhc-cCc---cchHHHHHHhhhhhcccchhHHHHHhhccccccccC----
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFK-FFP---DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT---- 99 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk-~FP---~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~---- 99 (449)
...+-|.+-|...+ .-+..|--|=+.+.+.++ +.| ..++..+...+|..+|+|+=|=-.||+++..+|-=.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 56677888888888 557888888888888886 222 346789999999999999999999999999988433
Q ss_pred ----------------ccchhhHHHHHHHHHhc
Q 013085 100 ----------------PEYLSKIVDILVQLLAA 116 (449)
Q Consensus 100 ----------------~e~v~kiaDVL~QLLqt 116 (449)
++++=||.-++.+++|.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa 836 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA 836 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH
Confidence 35555666666666653
No 71
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=58.54 E-value=3.9e+02 Score=31.99 Aligned_cols=92 Identities=21% Similarity=0.169 Sum_probs=67.5
Q ss_pred HHhhhhhHhhccCcc---chHHHHHHhhhh-hcccchhHHHHHhhccccccccCc--cchhhHHHHHHHHHhcchhHHHH
Q 013085 50 LAAQLIPRFFKFFPD---LSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTP--EYLSKIVDILVQLLAAEEIVERD 123 (449)
Q Consensus 50 LaAqfI~kffk~FP~---L~e~Ai~a~lDL-cEDed~~IR~qAik~Lp~lck~~~--e~v~kiaDVL~QLLqtdd~~E~~ 123 (449)
=|--+|++|-+.||. +-..-+|+.+.. -.|+-+.+|+.|++.+--.|+-.+ ...++|-|+|.||..--...-+.
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHH
Confidence 355678888888653 444555555544 456667789999999999996432 23789999999999644445577
Q ss_pred HHHHHHHHHHccchhhHH
Q 013085 124 AVHKALMSLLRQDVKASL 141 (449)
Q Consensus 124 ~V~~sL~~ll~~d~k~tL 141 (449)
.+-.+|.+..+.||+-+-
T Consensus 549 llmE~Ls~vv~~dpef~a 566 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFAA 566 (1005)
T ss_pred HHHHHHHHHhccChhhhh
Confidence 888999999999998553
No 72
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.94 E-value=86 Score=35.43 Aligned_cols=209 Identities=19% Similarity=0.256 Sum_probs=125.6
Q ss_pred hhhhhccccc--cCHHhHHH-HHHH-ccCCHHHHHHHhhhhhHhhc---cCccc--hHHHHHHhhhhhcccchhHHHHHh
Q 013085 19 ERLNEAKDKS--QNVKDYEG-IIEA-AKTSLKAKQLAAQLIPRFFK---FFPDL--SSRAVDAHLDLIEEEELGVRVQAI 89 (449)
Q Consensus 19 ~~L~~akd~~--~~~~~y~~-Il~~-~kg~~k~K~LaAqfI~kffk---~FP~L--~e~Ai~a~lDLcEDed~~IR~qAi 89 (449)
..|++.+|-. -+-..+.. ++.- +-.+..+.+++...+..|-+ +-|+- -++-|+-+.+=.-..++-|+..|+
T Consensus 192 ~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al 271 (675)
T KOG0212|consen 192 YVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKAL 271 (675)
T ss_pred HHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHH
Confidence 3455555542 33333332 2332 23566677777766666543 33433 344566666666677788998888
Q ss_pred hccccccccCc-cchhhHHHHHHHHHh--cc--h--hHHHHH-HHHHHHHHHccchhh-------HHHHHHHhhccCCCC
Q 013085 90 RGLPLFCKDTP-EYLSKIVDILVQLLA--AE--E--IVERDA-VHKALMSLLRQDVKA-------SLTALFKHIGSVDEP 154 (449)
Q Consensus 90 k~Lp~lck~~~-e~v~kiaDVL~QLLq--td--d--~~E~~~-V~~sL~~ll~~d~k~-------tL~~lf~qI~~~~~~ 154 (449)
.=|-.|.+-.| +.+.-.++||+-+|- ++ + ..|..+ |+..|+.++.....+ .+.++-.++.
T Consensus 272 ~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~----- 346 (675)
T KOG0212|consen 272 TWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS----- 346 (675)
T ss_pred HHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh-----
Confidence 88777766443 457788889999884 22 2 223444 444777777654443 5567777775
Q ss_pred CChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHH-HHHHHhccccCCCCchhHH--HHH
Q 013085 155 STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF-MDFLKSLSLFGEKAPTERM--KEL 231 (449)
Q Consensus 155 ~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~-m~lL~~l~~~~~~~p~~~~--qeL 231 (449)
.+-++.|-.+++||..-....|++++. .-.-|..-+-|.|-|-+ +|.++. .++|.+.-.- +++|-.|+ +-|
T Consensus 347 ~~~~~tri~~L~Wi~~l~~~~p~ql~~----h~~~if~tLL~tLsd~s-d~vvl~~L~lla~i~~s-~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 347 DDREETRIAVLNWIILLYHKAPGQLLV----HNDSIFLTLLKTLSDRS-DEVVLLALSLLASICSS-SNSPNLRKFLLSL 420 (675)
T ss_pred cchHHHHHHHHHHHHHHHhhCcchhhh----hccHHHHHHHHhhcCch-hHHHHHHHHHHHHHhcC-cccccHHHHHHHH
Confidence 667789999999999877777888773 22345556667777844 444433 5666665332 23333321 446
Q ss_pred HHHHHhh
Q 013085 232 IGIIEGQ 238 (449)
Q Consensus 232 v~~i~eq 238 (449)
++++.++
T Consensus 421 L~~f~e~ 427 (675)
T KOG0212|consen 421 LEMFKED 427 (675)
T ss_pred HHHHhhh
Confidence 6666664
No 73
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.80 E-value=39 Score=37.45 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=81.3
Q ss_pred HHHHccCCHHHHHHHhhhhhHhhccCccchHHHHH-----Hhhhhhcccch-hHHHHHhhccccccccCc-----cchhh
Q 013085 37 IIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVD-----AHLDLIEEEEL-GVRVQAIRGLPLFCKDTP-----EYLSK 105 (449)
Q Consensus 37 Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~-----a~lDLcEDed~-~IR~qAik~Lp~lck~~~-----e~v~k 105 (449)
|.-...+++.++.=|..-|.....+-|.+++-.++ .++.+....+. .+.+++.-.|..+|++-. +.++.
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 33345688888999999999999999999987665 58888888886 778899999999999874 66899
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHc
Q 013085 106 IVDILVQLLAAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 106 iaDVL~QLLqtdd~~E~~~V~~sL~~ll~ 134 (449)
+-.+|.+||.+.|+.-+.-+-+|+..|-+
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999999999998888777788776653
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.89 E-value=48 Score=35.49 Aligned_cols=88 Identities=15% Similarity=-0.003 Sum_probs=63.9
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
........++.+.+ .++.+++.+..-... +. .++...+..+.+|+|..||.+|++.|-.+... +.++.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~-----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~-- 182 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA--HR-----HDPGPALEAALTHEDALVRAAALRALGELPRR--LSEST-- 182 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh--hc-----cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH--
Confidence 45566777788877 778888877766665 11 22445666666799999999999999999754 55554
Q ss_pred HHHHHHHhcchhHHHHHHHHHH
Q 013085 108 DILVQLLAAEEIVERDAVHKAL 129 (449)
Q Consensus 108 DVL~QLLqtdd~~E~~~V~~sL 129 (449)
|...++.++++.+...-.+|
T Consensus 183 --L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 183 --LRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred --HHHHHcCCCHHHHHHHHHHH
Confidence 55778899988887765555
No 75
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.42 E-value=1e+02 Score=31.14 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=82.9
Q ss_pred HHHHHHhhhhhhccccccCHHhHHHHHH-Hcc-CCHHHHHHHhhhhhHhhccC-ccchHHHHHHhhhhhcccchhHHHHH
Q 013085 12 EKLYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFF-PDLSSRAVDAHLDLIEEEELGVRVQA 88 (449)
Q Consensus 12 e~LY~~~~~L~~akd~~~~~~~y~~Il~-~~k-g~~k~K~LaAqfI~kffk~F-P~L~e~Ai~a~lDLcEDed~~IR~qA 88 (449)
....+.++.|+..-+. +......+|+. -++ .-...+...+|.++-.-..| |++.-+++.-++-|.+..-..+|.+.
T Consensus 130 ~~~~~~A~~La~~a~~-~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 130 QECIEIAEALAQVAEA-QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHHHh-CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4566777788776543 33345555665 344 33566778888887766655 99999999999999999999999988
Q ss_pred hhccccccc---cCccchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Q 013085 89 IRGLPLFCK---DTPEYLSKIVDILVQLLAAEEIVERDAVHKALMS 131 (449)
Q Consensus 89 ik~Lp~lck---~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ 131 (449)
.+=|-.+-. -++-+.+-+.-.|.+|||||--.|.--|-+..++
T Consensus 209 L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 765433322 1222566677778999999999996655555443
No 76
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.77 E-value=2.2e+02 Score=27.75 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred hhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh
Q 013085 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (449)
Q Consensus 76 LcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~ 139 (449)
+-+..++.+....++.||.+|+.+...++-+..+|+.|..++...=.-+...-+..+++.+++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH
Confidence 7788999999999999999999865677888888888777655332234445555566665553
No 77
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=53.43 E-value=42 Score=36.66 Aligned_cols=125 Identities=22% Similarity=0.182 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhh--------hhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcc
Q 013085 8 AKQIEKLYEFGER--------LNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE 79 (449)
Q Consensus 8 ~~~ie~LY~~~~~--------L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcED 79 (449)
.+.++.+|+.... +=||--.....++++.|.+..+...-.-.-|++++..-...=+.-..+.++++++||++
T Consensus 325 ~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~ 404 (574)
T smart00638 325 EEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAES 404 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcC
Confidence 3456777765432 22333333455566666655553332224567777776666567778999999999998
Q ss_pred cc----hhHHHHHhhcccc----ccccCc--------cchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 013085 80 EE----LGVRVQAIRGLPL----FCKDTP--------EYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (449)
Q Consensus 80 ed----~~IR~qAik~Lp~----lck~~~--------e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~l 132 (449)
+. ..+|..|+=++-. .|.+++ ++++.+.+-|.+..+..+..|..+.-+||-.+
T Consensus 405 ~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 405 PEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 63 3466666554442 676664 23444444444444445555555555555433
No 78
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=51.51 E-value=57 Score=27.74 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=52.9
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccC---ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
+.|+.++.-.. +-+.++--+=..+.+-++.= ....+..++-++...+|+|+=|=-.||++|-.+|.-.| .++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p---~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP---DEVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh---HHHH
Confidence 34555555444 44444444444444444332 24556778888999999999999999999999998766 3466
Q ss_pred HHHHHHHh
Q 013085 108 DILVQLLA 115 (449)
Q Consensus 108 DVL~QLLq 115 (449)
+.|.+-..
T Consensus 80 ~~L~~~y~ 87 (92)
T PF10363_consen 80 PILLDEYA 87 (92)
T ss_pred HHHHHHHh
Confidence 66665443
No 79
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.49 E-value=50 Score=36.08 Aligned_cols=15 Identities=7% Similarity=-0.161 Sum_probs=7.2
Q ss_pred chhHHHHHhhccccc
Q 013085 81 ELGVRVQAIRGLPLF 95 (449)
Q Consensus 81 d~~IR~qAik~Lp~l 95 (449)
|...+.-+||+|..+
T Consensus 459 ~~~~~~~~LkaLGN~ 473 (574)
T smart00638 459 DEEEIQLYLKALGNA 473 (574)
T ss_pred CchheeeHHHhhhcc
Confidence 444444555555544
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=49.11 E-value=2.5e+02 Score=32.23 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=80.7
Q ss_pred HHHhhhhhHhhccC--ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHH
Q 013085 49 QLAAQLIPRFFKFF--PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (449)
Q Consensus 49 ~LaAqfI~kffk~F--P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~ 126 (449)
.=+|..+-+|--.. |++-++++.++--+.---.+..|-.|+|-|-+++.-.|+-|. ++.-=+.=|.+|+. ++.-.
T Consensus 282 lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vcN~evEsLIsd~N--r~Ist 358 (898)
T COG5240 282 LEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VCNKEVESLISDEN--RTIST 358 (898)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ecChhHHHHhhccc--ccchH
Confidence 33555555554443 777888888888888888888999999999999888887755 22222233444433 34556
Q ss_pred HHHHHHHccchhhHHHHHHHhhccC--CCCCC-----hHHHHHHHHHHHh
Q 013085 127 KALMSLLRQDVKASLTALFKHIGSV--DEPST-----DEFIREKVLSFIR 169 (449)
Q Consensus 127 ~sL~~ll~~d~k~tL~~lf~qI~~~--~~~~~-----ee~~Re~~l~Fl~ 169 (449)
-|+-+|||-....+...+.++|.+. |...+ -|.+|..+++|=+
T Consensus 359 yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 359 YAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 6888999998889999999888755 22111 2347777766654
No 81
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=47.20 E-value=90 Score=32.02 Aligned_cols=157 Identities=19% Similarity=0.309 Sum_probs=92.0
Q ss_pred hHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHH------HHHHHccchhhHHHHHHHhhccCCCCCC
Q 013085 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA------LMSLLRQDVKASLTALFKHIGSVDEPST 156 (449)
Q Consensus 83 ~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~s------L~~ll~~d~k~tL~~lf~qI~~~~~~~~ 156 (449)
..|..-||.|-.++.++.-|+| ++-.|..+|++-+..... +.+ +...++..+. ++.+ ..-
T Consensus 129 Plrlh~ir~L~~L~~~t~~fIP-l~~~lleiL~~~~~~~~~--k~~~~kp~d~~~~Lk~~k~--------~l~t---~~~ 194 (299)
T PF03715_consen 129 PLRLHCIRSLNRLSQSTGTFIP-LAPYLLEILESSEFNKKP--KKSSMKPLDFECLLKVSKS--------QLRT---RQF 194 (299)
T ss_pred chHHHHHHHHHHHHHhcCceEe-cHHHHHHHHhChhhcCCC--CCCCCCCcCHHHHhhccHH--------Hhcc---HHH
Confidence 4799999999999999999988 777777787764422210 001 2222322222 2211 011
Q ss_pred hHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHH
Q 013085 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIE 236 (449)
Q Consensus 157 ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~ 236 (449)
-+.+.+.++.-|.+.+......+-= +|+---++..+|+.++......|..- .+.|++-+.
T Consensus 195 ~d~v~e~~~~LL~e~la~~s~sIaF--PEl~~pii~~LKr~~K~~k~~~~~~~------------------ik~Li~kie 254 (299)
T PF03715_consen 195 QDGVIEEVYELLLEYLAIYSYSIAF--PELALPIIVQLKRFLKSCKNAKFKRQ------------------IKQLIDKIE 254 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHHHcccHHHHHH------------------HHHHHHHHH
Confidence 2345556666565555554444332 36666777777777666555555322 345555555
Q ss_pred hhhc------ccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHH
Q 013085 237 GQAD------LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNK 282 (449)
Q Consensus 237 eqa~------Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~ 282 (449)
++++ -.-.|.+.|.+.|+.+.+.++ ..+|++-.|+..
T Consensus 255 e~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~---------~~~tPl~~~~~~ 297 (299)
T PF03715_consen 255 ENSKFIESKRSKVDFSPKDQAQVEAFESELK---------WEGTPLGKYYAS 297 (299)
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHhcc---------cCCCCHHHHHHh
Confidence 5543 234589999999999888554 346667666643
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.70 E-value=4.4e+02 Score=29.33 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccC--CCC--CChHHHHHHHHHHHhhhcccchhh
Q 013085 103 LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV--DEP--STDEFIREKVLSFIRDKVFPLKAE 178 (449)
Q Consensus 103 v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~--~~~--~~ee~~Re~~l~Fl~~kl~~l~~e 178 (449)
.+-|+|.|.++=.+|...|.+-....|..++.-+.-+...-.|.+|... +.. +.++..|..++.-|..-+..=+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3444444444444555556655555555555444333334445553211 111 345568888888887666665666
Q ss_pred hcCChHHHHHHHH
Q 013085 179 LLKPQEEMERHIT 191 (449)
Q Consensus 179 ~l~~~~E~E~~i~ 191 (449)
+..++|.+-.-++
T Consensus 365 l~DstE~ai~K~L 377 (516)
T KOG2956|consen 365 LFDSTEIAICKVL 377 (516)
T ss_pred hhchHHHHHHHHH
Confidence 6655444333333
No 83
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=46.01 E-value=1.5e+02 Score=27.21 Aligned_cols=48 Identities=33% Similarity=0.385 Sum_probs=41.1
Q ss_pred hHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhc
Q 013085 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (449)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt 116 (449)
+++--+++++|+-+.|+.|++.|++.|-.. |+ .++.+-.|-|..||..
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~-k~--~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW-KD--PYLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc--HHHHhHHHHHHHHcCc
Confidence 577788999999999999999999999887 33 4788888999888863
No 84
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=43.64 E-value=1.1e+02 Score=30.83 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=64.9
Q ss_pred HhHHHHH-HHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCc---------
Q 013085 32 KDYEGII-EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--------- 100 (449)
Q Consensus 32 ~~y~~Il-~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~--------- 100 (449)
.-+..|| -+++ .++.++++|=.-+.-|-=--++++.+.+.-++...+.++..||+.|++.|-++..-..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4466666 4666 6677777776666666666667777766666666666688899999888766543221
Q ss_pred ----cchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 013085 101 ----EYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (449)
Q Consensus 101 ----e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~l 132 (449)
.....+.++|...|.++++.=..++=..+.-|
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 12356777888888887655333333333333
No 85
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=43.26 E-value=5.7e+02 Score=29.44 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=63.5
Q ss_pred hhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhc----------chhHHHHH
Q 013085 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA----------EEIVERDA 124 (449)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt----------dd~~E~~~ 124 (449)
..-||..||.+...-|-+..-+---.+..+|+.|.==|-.+|+.+. -.=+-++|-++.-+ +.-.=.+-
T Consensus 269 l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~--~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~F 346 (661)
T KOG2256|consen 269 LVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK--STCLDPVLKTMYLAFVRNSKFVTVNTLPLINF 346 (661)
T ss_pred HHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 3458889999999999999988888889999999998888888642 22233444443321 11122445
Q ss_pred HHHHHHHHHccchhhHHHHHHHhh
Q 013085 125 VHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 125 V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
.++++.+|+.+|+...-.--|.-|
T Consensus 347 l~~slvEL~~ld~~~~Yq~aF~yI 370 (661)
T KOG2256|consen 347 LQNSLVELLGLDLQVSYQHAFVYI 370 (661)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 678888888888776665555443
No 86
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=42.64 E-value=3.5e+02 Score=26.78 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=41.2
Q ss_pred hccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHc---cchhhH--HHHHHHhhccCCCCCChHHHHHHH
Q 013085 90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLR---QDVKAS--LTALFKHIGSVDEPSTDEFIREKV 164 (449)
Q Consensus 90 k~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~---~d~k~t--L~~lf~qI~~~~~~~~ee~~Re~~ 164 (449)
..+..+|.+. +-+|+ |-++|....+.|+..+=+++...+. .|+-|. +..++. .++++.|..+
T Consensus 10 ~~~~~l~~~~--~gsr~---lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~--------~~~~~~~~~i 76 (322)
T cd07920 10 GHIVEFAKDQ--HGSRF---LQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFE--------HGTEEQRLQL 76 (322)
T ss_pred cchhhccCCc--hhhHH---HHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHH--------hCCHHHHHHH
Confidence 5667777773 56665 6677777778888877776555442 222221 233332 2345566666
Q ss_pred HHHHhhhcccc
Q 013085 165 LSFIRDKVFPL 175 (449)
Q Consensus 165 l~Fl~~kl~~l 175 (449)
+.=+.+++..+
T Consensus 77 ~~~~~~~~~~l 87 (322)
T cd07920 77 LEKILGHVVRL 87 (322)
T ss_pred HHHHHHHHHHH
Confidence 65555554444
No 87
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=41.92 E-value=6.7e+02 Score=29.86 Aligned_cols=293 Identities=17% Similarity=0.205 Sum_probs=151.3
Q ss_pred cCHHhHHHHHHHcc-CCHHHHH-------HHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccc---
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQ-------LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK--- 97 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~-------LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck--- 97 (449)
..+.-|.+|+-|-. .+....- ..-+|-.|-=++-| +-+...+-+...-.+.||.||-+-+..+.+
T Consensus 756 leE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylp----qi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 756 LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLP----QICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchH----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 44555777777665 3322221 12222222223333 445667778888999999999776655432
Q ss_pred --cCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccC---CCCCChHHHHHHHHHHHhhhc
Q 013085 98 --DTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV---DEPSTDEFIREKVLSFIRDKV 172 (449)
Q Consensus 98 --~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~---~~~~~ee~~Re~~l~Fl~~kl 172 (449)
+..+...+..=||...|..|+|.-+-.|-+|+.++...-.-...+.=.++|.+. =-.+-.+-+.+.+|.++- ++
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg-~I 910 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG-TI 910 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHH-HH
Confidence 112346667778888899999998888888888877543111111111222210 001345568888888775 44
Q ss_pred ccchhhhcCChHHHHHHHHH---H---HHhhccccchHHH----------HHHHHHHHhccccCCCCchhHHHHH-----
Q 013085 173 FPLKAELLKPQEEMERHITD---L---IKKSLEDVTGAEF----------RMFMDFLKSLSLFGEKAPTERMKEL----- 231 (449)
Q Consensus 173 ~~l~~e~l~~~~E~E~~i~~---~---ikK~L~dVt~~EF----------~l~m~lL~~l~~~~~~~p~~~~qeL----- 231 (449)
...++|+... .|-.+.-.+ . -||.+..-+-+-| +.+-.+|.+|+. ++|++..
T Consensus 911 adrgpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv------qeRq~RvcTtva 983 (1172)
T KOG0213|consen 911 ADRGPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV------QERQNRVCTTVA 983 (1172)
T ss_pred HhcCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH------HHHHhchhhhhh
Confidence 4445555532 332222111 1 1223322222223 345566777755 4555543
Q ss_pred HHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCC--ChhhHHHHHHH-------hhccCCCCC-C----hhhhH
Q 013085 232 IGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGA--SGSKFLNYLNK-------HIIPVFDKL-P----EERKL 297 (449)
Q Consensus 232 v~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v--~Stkfv~y~~~-------~VlP~l~~L-~----e~~kL 297 (449)
+.++.|-++ +|.+. .-|++--+.-=-+...|+ +-+=||+|+-+ .|.|-+.+- . ..+|+
T Consensus 984 IaIVaE~c~---pFtVL-----PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqt 1055 (1172)
T KOG0213|consen 984 IAIVAETCG---PFTVL-----PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQT 1055 (1172)
T ss_pred hhhhhhhcC---chhhh-----HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHH
Confidence 344444433 34321 111110000000011111 11223444333 367755552 1 24555
Q ss_pred --HHHHHHHhhCCCCChhh-HhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHH
Q 013085 298 --DLLKALAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECL 348 (449)
Q Consensus 298 --~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcL 348 (449)
.+.|.+|=-++-.|-.| +--+|+.|+..+++..|- .+-++.||+
T Consensus 1056 a~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPh-------viqa~~e~~ 1102 (1172)
T KOG0213|consen 1056 AMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPH-------VIQAFDEAM 1102 (1172)
T ss_pred HHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChH-------HHHHHHHHH
Confidence 88999998877777777 555778787777766653 566666664
No 88
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.89 E-value=95 Score=35.44 Aligned_cols=110 Identities=13% Similarity=0.244 Sum_probs=71.1
Q ss_pred HHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHH----hhhhhcccchhHHHHHhhccccccc--cCccch
Q 013085 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA----HLDLIEEEELGVRVQAIRGLPLFCK--DTPEYL 103 (449)
Q Consensus 31 ~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a----~lDLcEDed~~IR~qAik~Lp~lck--~~~e~v 103 (449)
..-++-+|-|+. .+.+++.=+-|.|++------+.-|.-.|. +..=.=|.++.||++|++.|-.+-- +|++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-- 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-- 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--
Confidence 345777888888 778888888899888776665544444444 4444558999999999998865532 2333
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHH
Q 013085 104 SKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (449)
Q Consensus 104 ~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~ 146 (449)
-+++-+|.-++|-|-+.| |+.+.+.-+..|+ .|+.-+.-
T Consensus 168 n~~~n~l~~~vqnDPS~E---VRr~allni~vdn-sT~p~IlE 206 (885)
T COG5218 168 NRIVNLLKDIVQNDPSDE---VRRLALLNISVDN-STYPCILE 206 (885)
T ss_pred HHHHHHHHHHHhcCcHHH---HHHHHHHHeeeCC-CcchhHHH
Confidence 345557777777777776 4445454454443 34444443
No 89
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=41.69 E-value=1.3e+02 Score=30.03 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=44.1
Q ss_pred cchhHHHHHhhccccccccCccc---hhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh-----------hHHHHHH
Q 013085 80 EELGVRVQAIRGLPLFCKDTPEY---LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-----------ASLTALF 145 (449)
Q Consensus 80 ed~~IR~qAik~Lp~lck~~~e~---v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k-----------~tL~~lf 145 (449)
-|+.++..|.|.|-.++..+.-| ..-+.| |.+||.+++..-...|-+.|+. |..+|. ..|-++|
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~-ll~LL~~G~~~~k~~vLk~L~n-LS~np~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPD-LLSLLSSGSEKTKVQVLKVLVN-LSENPDMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHH-HHHHHHcCChHHHHHHHHHHHH-hccCHHHHHHHHhccchhHHHHHH
Confidence 35667778888888887665211 333444 4578887665444444444433 333443 2333344
Q ss_pred HhhccCCCCCChHHHHHHHHHHHh
Q 013085 146 KHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 146 ~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+. ++..++-.++|.|..
T Consensus 185 ~~-------~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 185 NS-------SESKENLLRVLTFFE 201 (254)
T ss_pred cc-------CCccHHHHHHHHHHH
Confidence 22 334556677777765
No 90
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=40.08 E-value=4.4e+02 Score=27.25 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHhhhhhhccccc-cCHHhHHHHHHHccCCHHHHHHHhhhhhH-hhccCccchHHHHHHhhhhhcccchhHHHHHhhcc
Q 013085 15 YEFGERLNEAKDKS-QNVKDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGL 92 (449)
Q Consensus 15 Y~~~~~L~~akd~~-~~~~~y~~Il~~~kg~~k~K~LaAqfI~k-ffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~L 92 (449)
.++++.+.+..... ...+.-..||..+-|..+++.+-..+-+. --.-|..|..---..+..+..++++++=.-+++.+
T Consensus 65 ~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~~ld~~~l~~lL~~EhpqtiA~iLs~l 144 (339)
T PRK05686 65 EEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLRKMDPQQLANFIRNEHPQTIALILSYL 144 (339)
T ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHhcCCHHHHHHHHHhcCHHHHHHHHhCC
Confidence 45555555433222 55566678888777777776655443321 00245555554555556677788877544444443
Q ss_pred c------------------------cccccCccchhhHHHHHHHHHhc---chhHHHHHHHHHHHHHHccchhhHHHHHH
Q 013085 93 P------------------------LFCKDTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKASLTALF 145 (449)
Q Consensus 93 p------------------------~lck~~~e~v~kiaDVL~QLLqt---dd~~E~~~V~~sL~~ll~~d~k~tL~~lf 145 (449)
| .+-.=+|+-+..|.++|.+.+.. .......-+ +.+..++..=++++-..++
T Consensus 145 ~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~-~~~a~Iln~~~~~~~~~il 223 (339)
T PRK05686 145 KPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGV-KTVAEILNNLDRQTEKTIL 223 (339)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcH-HHHHHHHhcCCchHHHHHH
Confidence 3 22222344455555555555532 111222222 2244555555555666666
Q ss_pred HhhccCCCCCChHHHHHHHHHHH
Q 013085 146 KHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 146 ~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
..|... .|.--+.+|+++..|=
T Consensus 224 ~~L~~~-d~~~a~~Ir~~mF~Fe 245 (339)
T PRK05686 224 ESLEEE-DPELAEKIKDLMFVFE 245 (339)
T ss_pred HHHHhh-CHHHHHHHHHHhcCHH
Confidence 666521 1111223666666653
No 91
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=39.84 E-value=1.1e+02 Score=25.40 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHhhc---cccchHHHHHHHHHHHhc
Q 013085 181 KPQEEMERHITDLIKKSL---EDVTGAEFRMFMDFLKSL 216 (449)
Q Consensus 181 ~~~~E~E~~i~~~ikK~L---~dVt~~EF~l~m~lL~~l 216 (449)
.+.+|++..+-..+.+.| .=||.+||+..-.+|..+
T Consensus 24 ~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~ 62 (79)
T PF04380_consen 24 GPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLART 62 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 346777777777776655 579999999998888766
No 92
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.72 E-value=2.3e+02 Score=32.76 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHHHhhccccchHHHHHH-HHHHHhccccCCCCchhHHHH-HHHHHHhhhcccCCCCCCChhhHHHHHHH
Q 013085 182 PQEEMERHITDLIKKSLEDVTGAEFRMF-MDFLKSLSLFGEKAPTERMKE-LIGIIEGQADLDAQFNVSDADHIDRLISC 259 (449)
Q Consensus 182 ~~~E~E~~i~~~ikK~L~dVt~~EF~l~-m~lL~~l~~~~~~~p~~~~qe-Lv~~i~eqa~Ld~~f~~sD~d~vdrli~C 259 (449)
++.|.+..+.-.|+.++.-.-..+.-+| |+-+.. .-.++|+++..+ .+.++-. -++..|...=++.+
T Consensus 342 s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdl---L~~Kt~~e~~~~~IlplL~~------S~~~~~~~iQ~~~L-- 410 (700)
T KOG2137|consen 342 SQNEFGPKMLPALKPIYSASDPKQALLFILENMDL---LKEKTPPEEVKEKILPLLYR------SLEDSDVQIQELAL-- 410 (700)
T ss_pred chhhhhhhhhHHHHHHhccCCcccchhhHHhhHHH---HHhhCChHHHHHHHHHHHHH------HhcCcchhhHHHHH--
Confidence 3556777777777777764333343332 332222 223556554332 3333322 22223332222222
Q ss_pred HHHhhhhhccCCChhhHHHHHHHhhccCCCCC-----ChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh-CCCC
Q 013085 260 LYMALPFFLRGASGSKFLNYLNKHIIPVFDKL-----PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY-MPLR 333 (449)
Q Consensus 260 l~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L-----~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y-mP~~ 333 (449)
+.+|-+..... +.++-+.|+|.+..+ .-..|..+|-.+|+++ ...|+.+.++.+-..++.+ .+.|
T Consensus 411 --~~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~~~~dp 481 (700)
T KOG2137|consen 411 --QILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKCIKTRDP 481 (700)
T ss_pred --HhhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhcCCCc
Confidence 23444443333 678888999988887 2378999999999998 4456666777666666766 3322
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 334 KTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 334 ~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
..+=..+=++|.|+-+.|+
T Consensus 482 ---------~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 482 ---------AIVMGFLRIYEALALIIYS 500 (700)
T ss_pred ---------HHHHHHHHHHHHHHhhccc
Confidence 1233344455666655555
No 93
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.46 E-value=18 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHhhhhhcccchhHHHHHhhcccccc
Q 013085 69 AVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (449)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAik~Lp~lc 96 (449)
++..+..|...+|..|+.+|+..|-.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5666777777777777777777766654
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=6.8e+02 Score=29.22 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=47.2
Q ss_pred HhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Q 013085 72 AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMS 131 (449)
Q Consensus 72 a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ 131 (449)
|+.-=.|||=-.||++|+-.+-.++...|.+-.+--|.|+-+++-|..+.+...-++|..
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTM 436 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444556888888999999999999999999999999999999987766665554445443
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=39.03 E-value=1.7e+02 Score=32.33 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=68.7
Q ss_pred cCHHhHHHHHHHccCCHH--HHHHHhhhhhHh--hccC---ccchHHHHHHhhhhhcc-cchhHHHHHhhccccccccCc
Q 013085 29 QNVKDYEGIIEAAKTSLK--AKQLAAQLIPRF--FKFF---PDLSSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTP 100 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg~~k--~K~LaAqfI~kf--fk~F---P~L~e~Ai~a~lDLcED-ed~~IR~qAik~Lp~lck~~~ 100 (449)
.|.+--+..|.+..|+.+ .+.=|=+-|++- +-.| ...=.+-+..+++...| +|..+|+-|.|-|-.+|+.+|
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 555556666776666622 222222323321 1111 11112456677788888 999999999999999999998
Q ss_pred cchhhHHH----HHHHHHh----cchhHHHHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 101 EYLSKIVD----ILVQLLA----AEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 101 e~v~kiaD----VL~QLLq----tdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
+|.-| +...+|+ +.+.+-..++.-++..+-..+|-.-+..+.--|.
T Consensus 363 ---~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il 416 (516)
T KOG2956|consen 363 ---ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL 416 (516)
T ss_pred ---HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh
Confidence 34332 1223332 4455555566666666666666666666665554
No 96
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=38.61 E-value=5.3e+02 Score=27.71 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHhccccCC
Q 013085 200 DVTGAEFRMFMDFLKSLSLFGE 221 (449)
Q Consensus 200 dVt~~EF~l~m~lL~~l~~~~~ 221 (449)
.+...||-.++.=|+.++.+++
T Consensus 237 s~~~~EFG~l~~~l~~LR~L~S 258 (372)
T PRK15338 237 SCSRLEFGQLLRRLTQLKMLRS 258 (372)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 5678899999988888888755
No 97
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=36.91 E-value=65 Score=32.29 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhccCCChh-------hHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCC-hhhHhhhhHHHHHHHH
Q 013085 256 LISCLYMALPFFLRGASGS-------KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-PQDSRQILPSVAVLLK 327 (449)
Q Consensus 256 li~Cl~~AlP~fS~~v~St-------kfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~-~~da~~~l~~i~~~L~ 327 (449)
-+..++||. +|..+++.. +.+..+|..+ |.|+.|+ .|.+++|=.-|-+...++ +.-+...+.-+|+.|-
T Consensus 110 aLaalRhak-WFq~~a~~l~s~~~viRIlrDl~~R~-p~w~~L~-~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~la 186 (248)
T PF07528_consen 110 ALAALRHAK-WFQARANGLQSCVIVIRILRDLRQRV-PTWQPLS-SWALELLVEKAISNNSSRQPLSPGDAFRRVLECLA 186 (248)
T ss_pred HHHHHHHhH-HHHHHhccCCCcceehhhHHHHHHhC-CCCCCCC-hhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHh
Confidence 345678876 787766655 6777777776 8899886 566666555554422232 3336677777888777
Q ss_pred h
Q 013085 328 K 328 (449)
Q Consensus 328 ~ 328 (449)
.
T Consensus 187 s 187 (248)
T PF07528_consen 187 S 187 (248)
T ss_pred C
Confidence 6
No 98
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=36.03 E-value=60 Score=36.67 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHh-hhhhccC----CChhhHHHHHHHhhcc---CCCCCChhhhHHH
Q 013085 228 MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPFFLRG----ASGSKFLNYLNKHIIP---VFDKLPEERKLDL 299 (449)
Q Consensus 228 ~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~A-lP~fS~~----v~Stkfv~y~~~~VlP---~l~~L~e~~kL~l 299 (449)
-+.|++++...+..|..|-..+-++.-.++.-++|. +|++.|- ++=.+=.-|.|..++- .+++ .+...+.-
T Consensus 516 ~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~~~f~kfa~~~s~-~~~l~~~~ 594 (700)
T KOG0953|consen 516 PSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVCSAFLKFARQYSQ-NEPLTFLW 594 (700)
T ss_pred HHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHHHHHHHHHHHHhc-CCcccHHH
Confidence 355999999999999988777777777777666665 8887662 2221111222322222 1221 12334455
Q ss_pred HHHHHhhCCCCChhh--HhhhhHHHHHHHHhhC
Q 013085 300 LKALAEISPYTTPQD--SRQILPSVAVLLKKYM 330 (449)
Q Consensus 300 LK~lAE~s~~~~~~d--a~~~l~~i~~~L~~ym 330 (449)
|| .+..-|.|-+.. ..+.++++|+.|-.||
T Consensus 595 l~-~~~~~p~~~p~t~~~L~~LEs~h~il~lYm 626 (700)
T KOG0953|consen 595 LK-FNLGWPNKIPKTIYELEDLESLHDILDLYM 626 (700)
T ss_pred HH-HhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 55 666667764422 5667888888888887
No 99
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=34.72 E-value=2.7e+02 Score=32.06 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHH
Q 013085 186 MERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYM 262 (449)
Q Consensus 186 ~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~ 262 (449)
+.++-.++|++.+.++...+.+-|++.|-.++... ..-+|+.++.+-.|| |+ -+.+.|+||..-+..
T Consensus 548 l~dfs~~~It~~~k~l~~~dl~~~I~~li~~~~~~------q~~~Ll~~vID~~GL---fn-~~~~~l~~L~~~Id~ 614 (670)
T PF10395_consen 548 LQDFSKDEITQEIKKLNKVDLNNFINFLIKLNNNE------QLWQLLSLVIDSNGL---FN-WDMETLEKLSEIIDS 614 (670)
T ss_pred HHHhhHHHHHHHHHhhccccHHHHHHHHhccCCcc------chHHHHHHHhhcccc---cc-CCHHHHHHHHHHHHH
Confidence 34444556666666666666677888877775531 235788988888777 65 467788888876554
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=33.86 E-value=4.9e+02 Score=25.94 Aligned_cols=103 Identities=23% Similarity=0.219 Sum_probs=69.4
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHH
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL 110 (449)
+.-..++.... .+.-.+.-|+.-+..+ -.++|+..+.++|.|++..||.+|+..|-.+- + +.-++.|
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~----~~a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL------GSEEAVPLLRELLSDEDPRVRDAAADALGELG--D----PEAVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--C----hhHHHHH
Confidence 45666666666 3455666665552221 24789999999999999999999999777662 2 3456688
Q ss_pred HHHHhc-chhHHHHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 111 VQLLAA-EEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 111 ~QLLqt-dd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
..+|++ ++...+.. +...+.+...+..+..++..+.
T Consensus 111 i~~l~~d~~~~vR~~---aa~aL~~~~~~~a~~~l~~~l~ 147 (335)
T COG1413 111 VELLENDENEGVRAA---AARALGKLGDERALDPLLEALQ 147 (335)
T ss_pred HHHHHcCCcHhHHHH---HHHHHHhcCchhhhHHHHHHhc
Confidence 888986 44444444 5555566666666777776664
No 101
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=33.64 E-value=71 Score=27.37 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHcc-CCHHHHHHHhhhhhHhhccCccch----HHHHHHhhhhhcccchhHHHHH
Q 013085 37 IIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS----SRAVDAHLDLIEEEELGVRVQA 88 (449)
Q Consensus 37 Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~----e~Ai~a~lDLcEDed~~IR~qA 88 (449)
+|.... .+.++.-.|.+-+....|.+++-- ++.++++..++-|.|+.||..|
T Consensus 32 VL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 32 VLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 344444 778888888888877777765543 6789999999999999999776
No 102
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=32.99 E-value=2.4e+02 Score=25.83 Aligned_cols=74 Identities=31% Similarity=0.424 Sum_probs=52.4
Q ss_pred HHHHHHHHHhh--hhh-ccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085 254 DRLISCLYMAL--PFF-LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 254 drli~Cl~~Al--P~f-S~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y 329 (449)
+||...+...+ |-. +....+.-|++.+..-+ .=..+|..+-.-+.|-++.+|-++.+..+...+..|..+|+.+
T Consensus 21 ~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l--~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~~ 97 (164)
T PF03914_consen 21 DRFYRALYSLLLDPELFSSSDKSALLLNLLDKSL--KSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKRH 97 (164)
T ss_pred HHHHHHHHHHHcchhhccccchHHHHHHHHHHHH--cccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 57777777766 332 22222334888777766 5566777888899999999988888877888888887777763
No 103
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=32.94 E-value=5.1e+02 Score=30.01 Aligned_cols=200 Identities=21% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHh-
Q 013085 137 VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS- 215 (449)
Q Consensus 137 ~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~- 215 (449)
||.+....|.++ ...+..|-..+.|+..-. ++++++ -..-..+...-+.|+--+.+|+.-|+..|..
T Consensus 214 pk~~~~~~~k~~------~~~~~~r~n~~~~~~~~~--~~~gff----~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~ 281 (690)
T KOG1243|consen 214 PKALIELYCKKL------GATELKRPNKLRFILECR--LLGGFF----RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDR 281 (690)
T ss_pred chhHHHHHHHHh------ccccccccchhhHHHHHH--hccccc----cchHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Q ss_pred ccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhh
Q 013085 216 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (449)
Q Consensus 216 l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~ 295 (449)
++.|...- -+..++-++..+..++. .-++-+--++-|.+- ...-.|-.++.-.|++-|...+...
T Consensus 282 l~~~pe~i---~~~kvlp~Ll~~~~~g~----a~~~~ltpl~k~~k~--------ld~~eyq~~i~p~l~kLF~~~Dr~i 346 (690)
T KOG1243|consen 282 LDNFPEEI---IASKVLPILLAALEFGD----AASDFLTPLFKLGKD--------LDEEEYQVRIIPVLLKLFKSPDRQI 346 (690)
T ss_pred HhhhhHHH---HHHHHHHHHHHHhhccc----cchhhhhHHHHhhhh--------ccccccccchhhhHHHHhcCcchHH
Q ss_pred hHHHHHHHHhhCCCCChhh-HhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhc-CCccccccccceeec
Q 013085 296 KLDLLKALAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATNSLCGYKIVT 373 (449)
Q Consensus 296 kL~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k-~P~~l~~lcg~k~vT 373 (449)
|+.||..+=....+-+.+. -.+.+|.+-.-+...=| +.+|-.|-++-.|+-| .++-+|.
T Consensus 347 R~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~-----------~Lre~Tlksm~~La~kL~~~~Ln~-------- 407 (690)
T KOG1243|consen 347 RLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA-----------TLREQTLKSMAVLAPKLSKRNLNG-------- 407 (690)
T ss_pred HHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH-----------HHHHHHHHHHHHHHhhhchhhhcH--------
Q ss_pred CCCCCCCCcChhhhHHHHHHHHHhHHHH
Q 013085 374 GQPSDRLGEDFSDCYKDFTERLTTVEDL 401 (449)
Q Consensus 374 gqpsd~~~ed~~~~~kdF~~RLqy~~~~ 401 (449)
+||+||+|+
T Consensus 408 -------------------Ellr~~ar~ 416 (690)
T KOG1243|consen 408 -------------------ELLRYLARL 416 (690)
T ss_pred -------------------HHHHHHHhh
No 104
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=32.55 E-value=5e+02 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHHHhhhcccc
Q 013085 156 TDEFIREKVLSFIRDKVFPL 175 (449)
Q Consensus 156 ~ee~~Re~~l~Fl~~kl~~l 175 (449)
+++..|+.+++.+.+.+.++
T Consensus 212 ~~~~~~~~i~~~l~~~~~~l 231 (322)
T cd07920 212 GDPDDTSRIIEKLLGNIVQL 231 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555444
No 105
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=6.6e+02 Score=26.71 Aligned_cols=236 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhhhhhcccchhHHHHHhhcccccccc----CccchhhHHHHHHHHHhcchh-----------HHHHHHHHHHHHH--
Q 013085 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKD----TPEYLSKIVDILVQLLAAEEI-----------VERDAVHKALMSL-- 132 (449)
Q Consensus 70 i~a~lDLcEDed~~IR~qAik~Lp~lck~----~~e~v~kiaDVL~QLLqtdd~-----------~E~~~V~~sL~~l-- 132 (449)
.+.+.+|.-+..+.||+.|+..+-.+.-. -..+=-+..-.|.||+..-++ .+-.-|++.|++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred ---------HccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccch
Q 013085 133 ---------LRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTG 203 (449)
Q Consensus 133 ---------l~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~ 203 (449)
-...-..-.-.+++.+. ++++.++.-..++= .+...-..+.+...+.|... .-
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs-----~~~~~~~~ll~~~~-----------~~~~~~lm~l~~~~~d~~~n--~~ 146 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLS-----RDDDEVAALLTNLT-----------EKKDSGLMRLARAFCDKSYN--AY 146 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhc-----cCchHHHHHHHhcc-----------cccccchHHHHHHHhCcccc--cc
Q ss_pred HHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHh
Q 013085 204 AEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKH 283 (449)
Q Consensus 204 ~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~ 283 (449)
++|+-+-.++..+..+ +.|| .-|...+.--+.++..++. ----.-|++--.-+-|--.+.
T Consensus 147 a~f~ylA~vf~nls~~----~~gR---------------~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 147 AEFHYLAPVFANLSQF----EAGR---------------KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred cchhHHHHHHHHHhhh----hhhh---------------hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc
Q ss_pred hccCCCCCChhhhHHHHHHHHhhCCCCChhh-HhhhhHHHHHHHHhhCC--CCCCCCCCcchHHHHHHH
Q 013085 284 IIPVFDKLPEERKLDLLKALAEISPYTTPQD-SRQILPSVAVLLKKYMP--LRKTGGEEMNFTYVECLL 349 (449)
Q Consensus 284 VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L~~ymP--~~~~~~~~l~fs~VEcLL 349 (449)
.+..+.- +.+.++|=.+ +.|-||+++ +++-...+..-| .|.| ..+..++++-=..|||++
T Consensus 207 ~~h~~lL---~e~~~lLp~i--LlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~ 269 (353)
T KOG2973|consen 207 KLHEVLL---DESINLLPAI--LLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALL 269 (353)
T ss_pred hhHHHHh---cchHHHHHHH--HhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHH
No 106
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=30.14 E-value=1.9e+02 Score=33.77 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=28.9
Q ss_pred hhhhHhhccCcc--chHHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 013085 53 QLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (449)
Q Consensus 53 qfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~ 98 (449)
+.+.+-+.++|+ ...+.-.-.-.||.|+.+.||..+=+.+..+.+.
T Consensus 220 glf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 220 GLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV 267 (759)
T ss_pred hhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH
Confidence 455554444542 1122223345799999999999888887777654
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=29.79 E-value=7.4e+02 Score=26.74 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=41.5
Q ss_pred hhhcccchhHHHHHhhccccccccCccchh-----hHHHHHHHHHhcc----hhHHHHHHHHHHHHHHccchhhHHHHHH
Q 013085 75 DLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAE----EIVERDAVHKALMSLLRQDVKASLTALF 145 (449)
Q Consensus 75 DLcEDed~~IR~qAik~Lp~lck~~~e~v~-----kiaDVL~QLLqtd----d~~E~~~V~~sL~~ll~~d~k~tL~~lf 145 (449)
+..++.|..|+++|.|-|-++.=.+|.--. ..++-|+..|... .+.|....---|.=|+.-.......-++
T Consensus 39 ~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~ 118 (446)
T PF10165_consen 39 DEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI 118 (446)
T ss_pred ccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH
Confidence 345777888999999988776555443211 2334456666544 3566666555555555544444444444
Q ss_pred H
Q 013085 146 K 146 (449)
Q Consensus 146 ~ 146 (449)
.
T Consensus 119 ~ 119 (446)
T PF10165_consen 119 E 119 (446)
T ss_pred H
Confidence 3
No 108
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=29.73 E-value=90 Score=28.80 Aligned_cols=75 Identities=19% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHH
Q 013085 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (449)
Q Consensus 31 ~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDV 109 (449)
....-.++..+. .++.+..-+-+++.+. .-++ -.+|+.=+-.-. .|+.||.-|++-|-....+ .+...
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W--~~~~-~~~aL~LL~~~~--~~~~vr~yAv~~L~~~~~~------~l~~y 106 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWW--APLS-PEDALELLSPKY--PDPVVRQYAVRVLESASDD------ELLLY 106 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcC--CCCC-HHHHHHHcCCcC--CCHHHHHHHHHHHHhCCHH------HHHHH
Confidence 355666666666 5555555555555554 1111 233333333223 3489999999999876443 46677
Q ss_pred HHHHHhc
Q 013085 110 LVQLLAA 116 (449)
Q Consensus 110 L~QLLqt 116 (449)
|.||.|+
T Consensus 107 lpQLVQa 113 (152)
T cd00864 107 LPQLVQA 113 (152)
T ss_pred HHHHHHH
Confidence 7777664
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.65 E-value=7.6e+02 Score=29.41 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=43.5
Q ss_pred hhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHH
Q 013085 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (449)
Q Consensus 76 LcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf 145 (449)
.+.+.|-.+-..||++|...++....|.+-.-+-|+|||.+.|...+...-.++..++..||+..+.-++
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3444454566666666666666666666666666777776655555555555666677777777655444
No 110
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=8e+02 Score=29.50 Aligned_cols=138 Identities=18% Similarity=0.278 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCC
Q 013085 103 LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKP 182 (449)
Q Consensus 103 v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~ 182 (449)
+.-++-+|++||+-|..-+ ...+| --.|+-||.-+- ++..-.|++.+|--+.+|+-.| +++
T Consensus 209 v~slvp~Lv~LL~~E~n~D--IMl~A---------cRaltyl~evlP----~S~a~vV~~~aIPvl~~kL~~I--eyi-- 269 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFD--IMLLA---------CRALTYLCEVLP----RSSAIVVDEHAIPVLLEKLLTI--EYI-- 269 (1051)
T ss_pred HHHHHHHHHHHHhccccHH--HHHHH---------HHHHHHHHhhcc----chhheeecccchHHHHHhhhhh--hhh--
Confidence 5667889999999887744 22222 244566665432 1333358888888888888776 455
Q ss_pred hHHHHHHHHHHHHhhccccchHHHH------HHHHHHHhccccCCCCchhHHHHHHHHHHhhhc-cc-------------
Q 013085 183 QEEMERHITDLIKKSLEDVTGAEFR------MFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD-LD------------- 242 (449)
Q Consensus 183 ~~E~E~~i~~~ikK~L~dVt~~EF~------l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~-Ld------------- 242 (449)
++-+..+.-++|+ +.++=. -+|..|..+-.|.+.. +..-+.+++.-+. +.
T Consensus 270 --DvAEQ~LqALE~i----SR~H~~AiL~AG~l~a~LsylDFFSi~a----QR~AlaiaaN~Cksi~sd~f~~v~ealPl 339 (1051)
T KOG0168|consen 270 --DVAEQSLQALEKI----SRRHPKAILQAGALSAVLSYLDFFSIHA----QRVALAIAANCCKSIRSDEFHFVMEALPL 339 (1051)
T ss_pred --HHHHHHHHHHHHH----HhhccHHHHhcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 4445555554544 333322 3788888888874422 2234444444332 11
Q ss_pred --CCCCCCChhhHHHHHHHHHHhhhhhcc
Q 013085 243 --AQFNVSDADHIDRLISCLYMALPFFLR 269 (449)
Q Consensus 243 --~~f~~sD~d~vdrli~Cl~~AlP~fS~ 269 (449)
+-|.-.|...|+-...|+....--|++
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 112234555666566666655555544
No 111
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.72 E-value=1.6e+02 Score=25.48 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA--EEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 71 ~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt--dd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
+.+.|+....+..-|++|+++|-.+.|-.+.|++..+-=+.-.||+ +.+.=....=++...+++.=+...|+.+++|+
T Consensus 18 ~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 18 DVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4456677778888899999999999997778876654444444553 33311222333444444443457788888876
Q ss_pred c
Q 013085 149 G 149 (449)
Q Consensus 149 ~ 149 (449)
.
T Consensus 98 ~ 98 (107)
T PF08064_consen 98 F 98 (107)
T ss_pred H
Confidence 5
No 112
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.58 E-value=1.2e+02 Score=30.45 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=43.0
Q ss_pred chHHHHHHhhhhhcccchh--HHHHHhhccccccccCccchhhHHHHHHHHHhc
Q 013085 65 LSSRAVDAHLDLIEEEELG--VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (449)
Q Consensus 65 L~e~Ai~a~lDLcEDed~~--IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt 116 (449)
+.+-.++.+.++++|++.. ||..|+++|..+...+|..-..+...+.+++..
T Consensus 108 v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 108 VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3445667788899998866 799999999999999998888888888888854
No 113
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=27.71 E-value=5.8e+02 Score=24.85 Aligned_cols=127 Identities=15% Similarity=0.088 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHH-----HHHhhhhhHhhccCccchHHHHHHhhh---hhc
Q 013085 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAK-----QLAAQLIPRFFKFFPDLSSRAVDAHLD---LIE 78 (449)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K-----~LaAqfI~kffk~FP~L~e~Ai~a~lD---LcE 78 (449)
+...+-.+.+.-..|...++ .-...--+.|-..++++.... ||-+.+..+==+.||.|+.-.....++ ..-
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 34445556666666666554 333344555566677554444 555555555555678888776664444 122
Q ss_pred --ccchhHHHHHhhccccccccCccchhhHHHHHHHHH-hcchhHHHHHHHHHHHHHHc
Q 013085 79 --EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL-AAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 79 --Ded~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLL-qtdd~~E~~~V~~sL~~ll~ 134 (449)
++.-.+.+..--.+-.+|+..|++-.-+.-.|.+.| +.++++-....=.+|..+..
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 222223333223445678888887666666677888 66666655554555555553
No 114
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.63 E-value=1.8e+02 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=30.7
Q ss_pred chhhhcCChHHHHHHHHHHHHh---hccccchHHHHHHHHHHHhc
Q 013085 175 LKAELLKPQEEMERHITDLIKK---SLEDVTGAEFRMFMDFLKSL 216 (449)
Q Consensus 175 l~~e~l~~~~E~E~~i~~~ikK---~L~dVt~~EF~l~m~lL~~l 216 (449)
+++..-.+.+|+|..+-..+.. .|.-||.|||+.-+++|-..
T Consensus 27 ~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rt 71 (103)
T COG2960 27 AAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRT 71 (103)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 4555555677888777766655 44579999999999888765
No 115
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=26.25 E-value=81 Score=27.93 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=44.4
Q ss_pred HHHhhhhhHhhccCcc--chHHHHHHhhhhhcccchhHHHHHhhcccc-ccccCccchhhHHHHHHHHHh
Q 013085 49 QLAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLPL-FCKDTPEYLSKIVDILVQLLA 115 (449)
Q Consensus 49 ~LaAqfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~-lck~~~e~v~kiaDVL~QLLq 115 (449)
.-+|..+-+|+++.|+ +..+..+.++..+.+.+...|+.+++.+-. +.+.+-.-+..+...|..+.+
T Consensus 53 ~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~ 122 (169)
T cd00159 53 HDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQ 122 (169)
T ss_pred HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 3577899999999987 677888999999988888888777655432 222221224444444444443
No 116
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.78 E-value=1.4e+02 Score=25.54 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHhhccccccccCccchhhHHHHHHHHHhcchh
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~ 119 (449)
.-...|+.+-.+|-++.++-+.|++++.+-+....+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~ 46 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPP 46 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 456789999999999999999999999998876555
No 117
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=8.6e+02 Score=31.01 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=71.7
Q ss_pred HHHHHHHccCC--HHHHHHHhhhhh----HhhccCccchHHHHHHhhhhhcccchhHHHH---HhhccccccccCccchh
Q 013085 34 YEGIIEAAKTS--LKAKQLAAQLIP----RFFKFFPDLSSRAVDAHLDLIEEEELGVRVQ---AIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 34 y~~Il~~~kg~--~k~K~LaAqfI~----kffk~FP~L~e~Ai~a~lDLcEDed~~IR~q---Aik~Lp~lck~~~e~v~ 104 (449)
-=+++++++|| -.+|-=+|+||. |+-+.-.-+...=+-|.+-=.+|.++.||++ |+-.|-.+.+++ . ..
T Consensus 1237 ip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d-q-~q 1314 (1702)
T KOG0915|consen 1237 IPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD-Q-MQ 1314 (1702)
T ss_pred HHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH-H-HH
Confidence 34566677765 345777888886 4555555688889999999999999999985 677777776653 2 33
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 105 kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
|..-.+.-.+-.+++.+. .+..+..+.+......-|.+--++|.
T Consensus 1315 KLie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn~asaIL 1358 (1702)
T KOG0915|consen 1315 KLIETLLADLLGKDESLK-SISCATISNIANYSQEMLKNYASAIL 1358 (1702)
T ss_pred HHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHhhHHHHH
Confidence 444444444433444544 34444444355555556666666665
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.59 E-value=6.6e+02 Score=29.07 Aligned_cols=129 Identities=24% Similarity=0.328 Sum_probs=79.8
Q ss_pred cCHHhHHHHHHHc---cCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccc---hhHHHHHh--hccccccccCc
Q 013085 29 QNVKDYEGIIEAA---KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE---LGVRVQAI--RGLPLFCKDTP 100 (449)
Q Consensus 29 ~~~~~y~~Il~~~---kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed---~~IR~qAi--k~Lp~lck~~~ 100 (449)
+....|..+|..+ +|+-+-|+-+-.-|.+-.++-|+..|.|+.-+-+.+||-+ ..||+=+| |+.|.-. .-.
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~-~P~ 486 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK-TPG 486 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC-Ccc
Confidence 4445566666533 5999999999999999999999999999999999999875 55677776 3344432 111
Q ss_pred cchhhHHHHHHHHHhcchhHHHHHHHHHHHHHH------ccch--hhHHHHHHHhhccCCCCCChHHHHHHH---HHHHh
Q 013085 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLL------RQDV--KASLTALFKHIGSVDEPSTDEFIREKV---LSFIR 169 (449)
Q Consensus 101 e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll------~~d~--k~tL~~lf~qI~~~~~~~~ee~~Re~~---l~Fl~ 169 (449)
.||.-| +-.+. -|-+.|+.+-++-| ..|+ -.+...+...+.. ..||++|+|+ ++|+.
T Consensus 487 ~yvrhI---yNR~i-----LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln----D~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHI---YNRLI-----LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN----DQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHH---HHHHH-----HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh----cccHHHHHHHHHHHHhhh
Confidence 333322 33222 22333333333332 1121 2344556666663 5677899875 56665
Q ss_pred h
Q 013085 170 D 170 (449)
Q Consensus 170 ~ 170 (449)
.
T Consensus 555 ~ 555 (898)
T COG5240 555 L 555 (898)
T ss_pred h
Confidence 3
No 119
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.26 E-value=3.5e+02 Score=30.87 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred HHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHh--cchhHHHHHH
Q 013085 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA--AEEIVERDAV 125 (449)
Q Consensus 48 K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq--tdd~~E~~~V 125 (449)
+.|=-++.-.++..=|+|+...+-+...++.=+....++ .-+.++.--+..++.+..+++..+|+|. +|-..+
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~---- 514 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS---- 514 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----
Confidence 444445555555566667777788887777666555554 2223333333334557888888999996 555444
Q ss_pred HHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhh
Q 013085 126 HKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (449)
Q Consensus 126 ~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~k 171 (449)
.|.++++ |+ .+..|+++-+- ++++++++-+..+|..-
T Consensus 515 --~L~~l~~-d~-~~~~~i~s~lf-----sp~~~l~qaA~~llk~~ 551 (727)
T PF12726_consen 515 --HLKELLS-DP-DAAQAIWSLLF-----SPDDDLYQAAQDLLKQA 551 (727)
T ss_pred --HHHHHHc-Cc-chhhHHHhhee-----CCChHHHHHHHHHHHHH
Confidence 5777887 44 77888888887 77889999999988754
No 120
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=25.24 E-value=5.7e+02 Score=23.90 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=9.7
Q ss_pred hhhHHHHHHHhhc
Q 013085 137 VKASLTALFKHIG 149 (449)
Q Consensus 137 ~k~tL~~lf~qI~ 149 (449)
..+.++|+++.|.
T Consensus 99 ~~~g~~g~~~di~ 111 (179)
T PF06757_consen 99 RGGGLNGFVDDIL 111 (179)
T ss_pred cCCCHHHHHHHHH
Confidence 4577888887776
No 121
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=24.98 E-value=1.5e+02 Score=26.02 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=43.6
Q ss_pred cc-chhHHHHHhhccccccccCccc---hhhHHHHHHHHHh-cchhHH----HHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 79 EE-ELGVRVQAIRGLPLFCKDTPEY---LSKIVDILVQLLA-AEEIVE----RDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 79 De-d~~IR~qAik~Lp~lck~~~e~---v~kiaDVL~QLLq-tdd~~E----~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
|+ |......|++..|.+-+-++.| +..+|.=|++.|- -++.-+ -..-.+||+++.-..|...-..+++++-
T Consensus 15 ~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~~f~ 94 (114)
T PF10193_consen 15 DDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTEEFF 94 (114)
T ss_dssp -----S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44 6778889999999999988883 5555555555442 222111 2467899999999999888888888876
No 122
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=24.95 E-value=42 Score=31.29 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=30.8
Q ss_pred hhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccc
Q 013085 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (449)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck 97 (449)
+||||. +|+.|-|+-...++++||-.||.+|-.++-
T Consensus 109 LPrFWq-------EAFeAAYe~L~sD~~~VrdaAisEIAkmS~ 144 (157)
T PF06708_consen 109 LPRFWQ-------EAFEAAYEELASDVPQVRDAAISEIAKMSV 144 (157)
T ss_pred CchHHH-------HHHHHHHHHHhccCcchhHHHHHHHHHHhh
Confidence 688885 899999988888889999999998877654
No 123
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.73 E-value=3.7e+02 Score=32.52 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=39.7
Q ss_pred hhHhh--ccCccch----------HHHHHHhhhhhcccchhH-HHHHhhccccccccCccchhhHHHHHHHHHhcc
Q 013085 55 IPRFF--KFFPDLS----------SRAVDAHLDLIEEEELGV-RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE 117 (449)
Q Consensus 55 I~kff--k~FP~L~----------e~Ai~a~lDLcEDed~~I-R~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtd 117 (449)
+..|| .++|.|+ ++|.+.++.||++|..-| |+..-=+|..+. -|..+|.+=|.|+.-.+
T Consensus 859 L~qFf~~~d~~~lsWi~ei~nGdy~rAs~~L~~la~~e~k~vakK~s~LsLaKL~----s~a~~~ee~l~~~~Iqk 930 (1128)
T KOG4121|consen 859 LIQFFQERDYGHLSWIQEILNGDYERASNTLLNLAVDEEKKVAKKESHLSLAKLA----SLAVEIEENLLILTIQK 930 (1128)
T ss_pred HHHHHhhccccccHHHHHHhcCcHHHHHHHHHHhcchHHHHHhhHHHHhhHHHHH----HHhhhhhhhHHHHHHHH
Confidence 34678 7777776 799999999999998776 555544444443 34445666666666433
No 124
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.02 E-value=3.6e+02 Score=33.08 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=93.2
Q ss_pred HHhHHHHHHHccCC---HHHHHHHhhhhh---------HhhccCccchHHHHHHhhhhh------------------c-c
Q 013085 31 VKDYEGIIEAAKTS---LKAKQLAAQLIP---------RFFKFFPDLSSRAVDAHLDLI------------------E-E 79 (449)
Q Consensus 31 ~~~y~~Il~~~kg~---~k~K~LaAqfI~---------kffk~FP~L~e~Ai~a~lDLc------------------E-D 79 (449)
++++...|.+.+.. -.+|.|-+.|-| .+|.+ |+||-.|-=|+-.|| | -
T Consensus 894 eDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces~l~llftimeks 972 (1251)
T KOG0414|consen 894 EDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKS 972 (1251)
T ss_pred chhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 34555555544411 114666666654 25555 889999888776653 2 5
Q ss_pred cchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH-----HHHHHHHHccchhhHHHHHHHhhccCCCC
Q 013085 80 EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV-----HKALMSLLRQDVKASLTALFKHIGSVDEP 154 (449)
Q Consensus 80 ed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V-----~~sL~~ll~~d~k~tL~~lf~qI~~~~~~ 154 (449)
.++-||-+++=++-++.-..|-.+...++-|...|+-+++.-+... |--|...+| .||-++-|---|.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~----- 1045 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLE----- 1045 (1251)
T ss_pred CCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhc-----
Confidence 6777999999999999999999999999999999997776654422 333334444 4888887777776
Q ss_pred CChHHHHHHHHHHHhh
Q 013085 155 STDEFIREKVLSFIRD 170 (449)
Q Consensus 155 ~~ee~~Re~~l~Fl~~ 170 (449)
.+++.+|.-+=.|..+
T Consensus 1046 D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 1046 DPNAEISDLAKSFFKE 1061 (1251)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 6677899988888864
No 125
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=23.55 E-value=1.2e+02 Score=22.94 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=26.4
Q ss_pred cchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh
Q 013085 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (449)
Q Consensus 101 e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~ 139 (449)
+|++- |+.|.|.+.+.. +...=.++.++|+.+|..
T Consensus 5 eYLKN---Vll~fl~~~e~~-r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 5 EYLKN---VLLQFLTLRESE-RETLLKVISTVLQLSPEE 39 (46)
T ss_pred HHHHH---HHHHHhccCcch-HHHHHHHHHHHhCCCHHH
Confidence 55553 489999888865 777777888999888764
No 126
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.50 E-value=1.2e+02 Score=27.09 Aligned_cols=70 Identities=16% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCC-CCChhhHhhhhHHHHHHHH
Q 013085 257 ISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISP-YTTPQDSRQILPSVAVLLK 327 (449)
Q Consensus 257 i~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~-~~~~~da~~~l~~i~~~L~ 327 (449)
-.|++..-+-|...+.+.+|++-+.+-+.+. ...+...|-.+|.++...+. |.+.......+..+|+.|+
T Consensus 62 d~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~~y~~lk 132 (133)
T cd03561 62 ELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSESFGGHSEDLPGIEDAYKLLK 132 (133)
T ss_pred HHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHh
Confidence 3466666566777787888998866666665 44566777777777766654 3332234556777787775
No 127
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=23.35 E-value=4.2e+02 Score=30.72 Aligned_cols=91 Identities=21% Similarity=0.240 Sum_probs=58.1
Q ss_pred HHHHHhhccccccccCccchhhHHHHH--HHHHh-cchhHH-HHHHHHHHHHHHc-cchhhHHHHHHHhhccCCCCCChH
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDIL--VQLLA-AEEIVE-RDAVHKALMSLLR-QDVKASLTALFKHIGSVDEPSTDE 158 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL--~QLLq-tdd~~E-~~~V~~sL~~ll~-~d~k~tL~~lf~qI~~~~~~~~ee 158 (449)
=|++-.|=||.+|.+- -...=++++| ++++. +.+..| -..+.-+|..+++ .||+.++--||...-...+....|
T Consensus 306 ~rv~~~kiLP~L~~el-~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e 384 (700)
T KOG2137|consen 306 ARVLFQKILPTLVAEL-VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE 384 (700)
T ss_pred HHHHHHhhhhHHHHHh-ccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH
Confidence 3778888888888742 1122233333 45553 444444 4467788888888 888888877777652222345567
Q ss_pred HHHHHHHHHHhhhcccc
Q 013085 159 FIREKVLSFIRDKVFPL 175 (449)
Q Consensus 159 ~~Re~~l~Fl~~kl~~l 175 (449)
++.++++.+|...+...
T Consensus 385 ~~~~~IlplL~~S~~~~ 401 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDS 401 (700)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 78888888887666554
No 128
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.32 E-value=5.4e+02 Score=26.42 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=34.9
Q ss_pred hHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085 275 KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 275 kfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y 329 (449)
+|++.++++-++.+-.||++.--.++..+.-...|+..+-+...|..+.+.+...
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777776665566677766677777666666666655555543
No 129
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=22.78 E-value=1.1e+02 Score=29.74 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCCChhh-HhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 298 DLLKALAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 298 ~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
-|++.|..++.++..+. ...+|-.||.=-+---|.....+.+++-.+||+|++ ++...+-|.
T Consensus 129 ~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~~~~~~~~~vvE~Li~--~~~~e~~~~ 191 (200)
T cd04388 129 YLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASSDSPEFHIRIIEVLIT--SEWNERQAA 191 (200)
T ss_pred HHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccccchhhHHHHHHHHHH--HHHhhcCCC
Confidence 45566788888877655 566788888654433332222466799999999999 788887763
No 130
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.53 E-value=6.5e+02 Score=23.62 Aligned_cols=142 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccc-hhhHHHHH-
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDIL- 110 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-v~kiaDVL- 110 (449)
.+.|++..- .+.+...+|-++|.--.+.==----+.+-+++-|.-|.++.||..|++-+-.++.-.+.. -++..+-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~ 89 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIR 89 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred ----HHHHhcchhHH-----HHHHHHHHHHHHccchhhHHHHHHHhhccC--CCC----CChHHHHHHHHHHHhhhcccc
Q 013085 111 ----VQLLAAEEIVE-----RDAVHKALMSLLRQDVKASLTALFKHIGSV--DEP----STDEFIREKVLSFIRDKVFPL 175 (449)
Q Consensus 111 ----~QLLqtdd~~E-----~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~--~~~----~~ee~~Re~~l~Fl~~kl~~l 175 (449)
.|.-...+... ...+-..|-++++ +.|..=..+++.+... ..+ .+...-.-..+.|+++.+..+
T Consensus 90 ~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 90 LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcC
Q ss_pred h
Q 013085 176 K 176 (449)
Q Consensus 176 ~ 176 (449)
+
T Consensus 169 ~ 169 (187)
T PF12830_consen 169 P 169 (187)
T ss_pred C
No 131
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=22.40 E-value=93 Score=26.29 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=38.5
Q ss_pred ccchhHHHHHhhcccccccc----CccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHH
Q 013085 79 EEELGVRVQAIRGLPLFCKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (449)
Q Consensus 79 Ded~~IR~qAik~Lp~lck~----~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~ 146 (449)
|+.-.+|-.|-+=|-.+|+. +|..-+||++.|.+.|..+ ++++-+++ |.+.||..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~--------~~~~~t~Y-----GAi~gL~~ 75 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP--------KKPLGTHY-----GAIVGLSA 75 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC--------CCCHHHHH-----HHHHHHHH
Confidence 44566788888888877775 3455788998888888755 34566666 66777663
No 132
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=22.22 E-value=3.1e+02 Score=29.06 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHhhhhhHhhc-cCccchH-HHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHH
Q 013085 50 LAAQLIPRFFK-FFPDLSS-RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (449)
Q Consensus 50 LaAqfI~kffk-~FP~L~e-~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~ 127 (449)
+---...|.-| +||.|.+ ..++.+-.+|++|.+.|-..|++-|...|-+. +.|-.=+|-|+=- ...... ..
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd---LR~Ait~Lqsls~--~gk~It--~~ 244 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD---LRRAITTLQSLSL--LGKRIT--TS 244 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc---HHHHHHHHHHhhc--cCcccc--hH
Confidence 33334444433 3777765 77899999999999999999999999999875 3333333333322 111111 11
Q ss_pred HHHHHHc-cchhhHHHHHHHhhccC
Q 013085 128 ALMSLLR-QDVKASLTALFKHIGSV 151 (449)
Q Consensus 128 sL~~ll~-~d~k~tL~~lf~qI~~~ 151 (449)
+....+. .=|...|..++.-+.+.
T Consensus 245 ~~~e~~~GvVp~~~l~~lle~a~S~ 269 (346)
T KOG0989|consen 245 LVNEELAGVVPDEKLLDLLELALSA 269 (346)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHcc
Confidence 2222222 44566777777777653
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=1e+03 Score=25.76 Aligned_cols=295 Identities=18% Similarity=0.225 Sum_probs=152.9
Q ss_pred HHHHhhhhhhccccccCHHhHHHHHH-Hcc-CCHHHHHHHhhhhhHhhccCc--cchH-------HHHHHhhhhhcccch
Q 013085 14 LYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFP--DLSS-------RAVDAHLDLIEEEEL 82 (449)
Q Consensus 14 LY~~~~~L~~akd~~~~~~~y~~Il~-~~k-g~~k~K~LaAqfI~kffk~FP--~L~e-------~Ai~a~lDLcEDed~ 82 (449)
+-.+-+||=.++...--...|.--|+ |.+ .++.+|.||..-|.+-..+-- +..+ +-.--++|..-.+|-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 34455566666655444445555554 555 789999999999988876554 2111 112235788888999
Q ss_pred hHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHH--------------HHHHHHHHHHccchhh----HHHHH
Q 013085 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERD--------------AVHKALMSLLRQDVKA----SLTAL 144 (449)
Q Consensus 83 ~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~--------------~V~~sL~~ll~~d~k~----tL~~l 144 (449)
.|-+.||+.|..++.- -|-|.-+.-|+-..... -|-.-++.++++.|.. +-+|+
T Consensus 143 eVAkAAiesikrialf--------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALF--------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred HHHHHHHHHHHHHHhc--------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 9999999998887652 23444444433222222 2334456777777654 33788
Q ss_pred HHhhccCCCCCC-hH-HHHHHHHHHHhhhcccc-hhhhcCChHHHHHHHHHHHHhhccccchHHHHHH---H---HHHHh
Q 013085 145 FKHIGSVDEPST-DE-FIREKVLSFIRDKVFPL-KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF---M---DFLKS 215 (449)
Q Consensus 145 f~qI~~~~~~~~-ee-~~Re~~l~Fl~~kl~~l-~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~---m---~lL~~ 215 (449)
.+++.. |-.| +| .||-.+|....+-.-.- +.+++. .+-++++|-.+.---+..-|+.| | .+++.
T Consensus 215 ldlLea--ElkGteDtLVianciElvteLaeteHgrefla-----QeglIdlicnIIsGadsdPfekfralmgfgkffgk 287 (524)
T KOG4413|consen 215 LDLLEA--ELKGTEDTLVIANCIELVTELAETEHGREFLA-----QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK 287 (524)
T ss_pred HHHHHH--HhcCCcceeehhhHHHHHHHHHHHhhhhhhcc-----hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc
Confidence 888864 3344 44 38999998776432221 333432 23456666665433333344433 3 44555
Q ss_pred ccccCCCCchhHHHHHHHHHHhhhcccCCC---CCCChhhHHHHHHHHHHhhhhhccCCChhhHHHH----HHHhhcc-C
Q 013085 216 LSLFGEKAPTERMKELIGIIEGQADLDAQF---NVSDADHIDRLISCLYMALPFFLRGASGSKFLNY----LNKHIIP-V 287 (449)
Q Consensus 216 l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f---~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y----~~~~VlP-~ 287 (449)
..+|. .+|+.....++-.| |..| ...||+.+.--|.-+-+ .-+++.+...+.- -.++++- .
T Consensus 288 eaimd-vseeaicealiiai------dgsfEmiEmnDpdaieaAiDalGi----lGSnteGadlllkTgppaaehllara 356 (524)
T KOG4413|consen 288 EAIMD-VSEEAICEALIIAI------DGSFEMIEMNDPDAIEAAIDALGI----LGSNTEGADLLLKTGPPAAEHLLARA 356 (524)
T ss_pred hHHhh-cCHHHHHHHHHHHH------HhhHHhhhcCCchHHHHHHHHHHh----ccCCcchhHHHhccCChHHHHHHHHH
Confidence 55552 13332222222222 2222 24567766655543332 2233333322210 1112221 2
Q ss_pred CCCCChhhhHHHHHHHHhhCCCCC--h---h---hHhhhhHHHHHHHHhhCCCCC
Q 013085 288 FDKLPEERKLDLLKALAEISPYTT--P---Q---DSRQILPSVAVLLKKYMPLRK 334 (449)
Q Consensus 288 l~~L~e~~kL~lLK~lAE~s~~~~--~---~---da~~~l~~i~~~L~~ymP~~~ 334 (449)
+++=.-..|.--++.||-++.-.- + . +-..+-..+|+.+..---+.|
T Consensus 357 fdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldP 411 (524)
T KOG4413|consen 357 FDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDP 411 (524)
T ss_pred hcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCCh
Confidence 222222345555667777765332 1 1 223455677777765444433
No 134
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.35 E-value=5.5e+02 Score=30.93 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHhhCCCCC--hhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCcccccccccee
Q 013085 294 ERKLDLLKALAEISPYTT--PQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKI 371 (449)
Q Consensus 294 ~~kL~lLK~lAE~s~~~~--~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~ 371 (449)
..|+..|++|--..|+-. .+.--.++.+.++.+.+..-. =+-..|+|-.=..|++|.++-||+.+
T Consensus 818 ~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~-------k~~L~v~~a~~~i~~m~~~sgDFv~s------ 884 (1014)
T KOG4524|consen 818 RIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLC-------KDPLIVQRAFSCIEQMGKYSGDFVAS------ 884 (1014)
T ss_pred HHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhc-------CchHHHHHHHHHHHHHHHHhhhHHHH------
Confidence 457788888877766532 222333333344444444422 23468999999999999999999854
Q ss_pred ecCCCCCCCCcChhhhHHHHHHHHH-hHHHH-HHHHHHHHHHH
Q 013085 372 VTGQPSDRLGEDFSDCYKDFTERLT-TVEDL-TRATMKKLTQG 412 (449)
Q Consensus 372 vTgqpsd~~~ed~~~~~kdF~~RLq-y~~~~-~q~yikkL~~~ 412 (449)
..++||..||- |+-+. ++++.|.++.-
T Consensus 885 --------------R~l~dvlP~l~~~~~~~~~~~~~~~~~~q 913 (1014)
T KOG4524|consen 885 --------------RFLEDVLPWLKHLCQDSFARTILKELRIQ 913 (1014)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 66899999997 55443 35566655433
No 135
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.23 E-value=8.4e+02 Score=28.47 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHH----hcchhHHHHHHHHHH------HH--HHccch
Q 013085 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL----AAEEIVERDAVHKAL------MS--LLRQDV 137 (449)
Q Consensus 70 i~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLL----qtdd~~E~~~V~~sL------~~--ll~~d~ 137 (449)
+.++-++.+|+...||+-+-..|.-+.+...-|=-..-|...-.| +.--..|+...-||. |+ ....|.
T Consensus 360 ~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 360 LKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH
Q ss_pred hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh--hhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHh
Q 013085 138 KASLTALFKHIGSVDEPSTDEFIREKVLSFIR--DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS 215 (449)
Q Consensus 138 k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~--~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~ 215 (449)
......+|.... +.+|+...-++.|.+ +++.+..+..+ .++ |+++=|.-|-.==..
T Consensus 440 re~m~iv~ref~-----spdeemkk~~l~v~~~C~~v~~~tp~~l--r~~---------------v~pefF~~fw~rr~A 497 (975)
T COG5181 440 REHMEIVFREFK-----SPDEEMKKDLLVVERICDKVGTDTPWKL--RDQ---------------VSPEFFSPFWRRRSA 497 (975)
T ss_pred HHHHHHHHHHhC-----CchhhcchhHHHHHHHHhccCCCCHHHH--HHh---------------hcHHhhchHHHhhhc
Q ss_pred ccccCCCCchhHHHHHHHHHHhhhccc---------------CCCCCCChhhHHHHHHHHHHh-----------------
Q 013085 216 LSLFGEKAPTERMKELIGIIEGQADLD---------------AQFNVSDADHIDRLISCLYMA----------------- 263 (449)
Q Consensus 216 l~~~~~~~p~~~~qeLv~~i~eqa~Ld---------------~~f~~sD~d~vdrli~Cl~~A----------------- 263 (449)
. +-|++++.-+...+..|..=+ .+|..-+...++|+++-+-.+
T Consensus 498 ~-----dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~A 572 (975)
T COG5181 498 G-----DRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNA 572 (975)
T ss_pred c-----cccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHH
Q ss_pred -----------hhhhcc-----CCChhhHHHHHHHhhccCCCCCChhhhH---HHHHHHHhhCCCCChhh-HhhhhHHHH
Q 013085 264 -----------LPFFLR-----GASGSKFLNYLNKHIIPVFDKLPEERKL---DLLKALAEISPYTTPQD-SRQILPSVA 323 (449)
Q Consensus 264 -----------lP~fS~-----~v~Stkfv~y~~~~VlP~l~~L~e~~kL---~lLK~lAE~s~~~~~~d-a~~~l~~i~ 323 (449)
+|.||. +....+|+.-+..-+|-.|..=|++.|. ++.-.+|-+...||... -..+-..+|
T Consensus 573 fqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLy 652 (975)
T COG5181 573 FQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILY 652 (975)
T ss_pred HHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHH
Q ss_pred HHH
Q 013085 324 VLL 326 (449)
Q Consensus 324 ~~L 326 (449)
+.|
T Consensus 653 E~l 655 (975)
T COG5181 653 ENL 655 (975)
T ss_pred Hhc
No 136
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.20 E-value=6.3e+02 Score=25.29 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCccc----------hhhHHHHHHHHHh-----cchhH---HHHHHHHHHHH
Q 013085 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----------LSKIVDILVQLLA-----AEEIV---ERDAVHKALMS 131 (449)
Q Consensus 70 i~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~----------v~kiaDVL~QLLq-----tdd~~---E~~~V~~sL~~ 131 (449)
+=.++-|.+|.++.+|.+|++-|..+...-+.- .+=+-|.|..+|- |++.. =+.++--+|.+
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 446778999999999999999999988754422 2223455666665 23333 34566666666
Q ss_pred HHcc
Q 013085 132 LLRQ 135 (449)
Q Consensus 132 ll~~ 135 (449)
+++.
T Consensus 201 L~~~ 204 (282)
T PF10521_consen 201 LLKT 204 (282)
T ss_pred HHHh
Confidence 6653
No 137
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=3.7e+02 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhh--cccCCCCCCChhhHHHHHHHHHHhh
Q 013085 228 MKELIGIIEGQA--DLDAQFNVSDADHIDRLISCLYMAL 264 (449)
Q Consensus 228 ~qeLv~~i~eqa--~Ld~~f~~sD~d~vdrli~Cl~~Al 264 (449)
|.+|++-+.++- -+-..|.+.+..+||.|+.|++.|.
T Consensus 606 R~kla~nl~~~lr~all~l~~aLn~ksiDdF~~a~~saa 644 (776)
T KOG2235|consen 606 REKLAENLPEMLRDALLSLFAALNSKSIDDFHDAVYSAA 644 (776)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 567777666662 2445577778899999999999776
No 138
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=20.95 E-value=99 Score=20.16 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=20.6
Q ss_pred hHHHHHhhccccccccCccchhhHHHHHHHHHhc
Q 013085 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (449)
Q Consensus 83 ~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt 116 (449)
.||..|+..|-.+. + ++..+.|.++|+.
T Consensus 2 ~vR~~aa~aLg~~~--~----~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--D----EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--C----HhHHHHHHHHhcC
Confidence 58999999999883 2 4456677777754
No 139
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.93 E-value=1.6e+02 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHhhCCCC----CCCCCCcchHHHH-HHHHHHHhhhh
Q 013085 316 RQILPSVAVLLKKYMPLR----KTGGEEMNFTYVE-CLLYTFHHLAH 357 (449)
Q Consensus 316 ~~~l~~i~~~L~~ymP~~----~~~~~~l~fs~VE-cLLyafH~L~~ 357 (449)
.+..+.|...|+.|-|.. |.....++-.+|| +|=..|-++-|
T Consensus 148 P~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk 194 (239)
T PF11935_consen 148 PQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLK 194 (239)
T ss_dssp GGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHC
Confidence 445667777778877765 4434568888888 55555555555
No 140
>PHA02713 hypothetical protein; Provisional
Probab=20.75 E-value=3.8e+02 Score=29.61 Aligned_cols=105 Identities=9% Similarity=0.057 Sum_probs=67.1
Q ss_pred HHhHHHHHHHcc--CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 31 VKDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 31 ~~~y~~Il~~~k--g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.+.-+.+|.++. .=+.+|+++++|+.+...--==+.=-++=+... |.+-...++.-..+.++.+++. ++++.=..+
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~-~~~L~~~a~~~i~~~f~~v~~~-~ef~~L~~~ 170 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMS-HIPIVKYIKRMLMSNIPTLITT-DAFKKTVFE 170 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhCC-hhhhhCCHH
Confidence 344666777666 778999999999987665211111111111111 1111234666777899999874 589888888
Q ss_pred HHHHHHhcchh----HHHHHHHHHHHHHHccchh
Q 013085 109 ILVQLLAAEEI----VERDAVHKALMSLLRQDVK 138 (449)
Q Consensus 109 VL~QLLqtdd~----~E~~~V~~sL~~ll~~d~k 138 (449)
-|.++|.+|+. .|-.+. +|++.-++.|+.
T Consensus 171 ~l~~lL~~d~~l~v~~Ee~v~-eav~~W~~~d~~ 203 (557)
T PHA02713 171 ILFDIISTNDNVYLYREGYKV-TILLKWLEYNYI 203 (557)
T ss_pred HHHHHhccccccCCCcHHHHH-HHHHHHHhcCHH
Confidence 99999998773 354444 778888887763
No 141
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.69 E-value=7.1e+02 Score=24.46 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=72.1
Q ss_pred CCCChhhHHHHHHHHHHhhhhhccCCChhhH-------HHHHHHhhccCCCCCChhhhHHHHHHHHhhC----CC-----
Q 013085 246 NVSDADHIDRLISCLYMALPFFLRGASGSKF-------LNYLNKHIIPVFDKLPEERKLDLLKALAEIS----PY----- 309 (449)
Q Consensus 246 ~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkf-------v~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s----~~----- 309 (449)
+..|+..+-+.|+|....-|..-+.+..++- ++-+-+.|+..|+.-.+..|+..+|-+--+. +-
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~ 82 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSP 82 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 3457888889999988887764333322222 2333346777777777788888888654431 00
Q ss_pred --------------------CChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccc
Q 013085 310 --------------------TTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLC 367 (449)
Q Consensus 310 --------------------~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lc 367 (449)
-....-++--..+++.|+.++=. +.+.-+.+-+.+-++..++++.|.+++.+-
T Consensus 83 ~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~-----~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 83 PRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQS-----PHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp --GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC------TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred cccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 01111222234567777777743 337888999999999999999999986543
No 142
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=1.5e+03 Score=27.09 Aligned_cols=215 Identities=17% Similarity=0.236 Sum_probs=118.9
Q ss_pred cccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH-----------HHHHHHHHccchhhHHHHHHH
Q 013085 78 EEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV-----------HKALMSLLRQDVKASLTALFK 146 (449)
Q Consensus 78 EDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V-----------~~sL~~ll~~d~k~tL~~lf~ 146 (449)
|+=-.+||---=|=+|-+.- +-+|.|--.+.+||.+-|+-|+.-+ |-.+++++.+==-.-+..+|+
T Consensus 711 E~iRsavrft~hRmI~~lg~---~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfs 787 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGN---KVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFS 787 (980)
T ss_pred chhHHHHHHHHHHHHHhcch---hhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666776643 5566666668899998888886533 333333333222344567787
Q ss_pred hhccCCCCCChHH------HHHHHHHHHhhhcccchhhhcCChHHHH---H-HHHHHHHhhccccchHHHHHH-----HH
Q 013085 147 HIGSVDEPSTDEF------IREKVLSFIRDKVFPLKAELLKPQEEME---R-HITDLIKKSLEDVTGAEFRMF-----MD 211 (449)
Q Consensus 147 qI~~~~~~~~ee~------~Re~~l~Fl~~kl~~l~~e~l~~~~E~E---~-~i~~~ikK~L~dVt~~EF~l~-----m~ 211 (449)
-|.-...|++... .|.--..||.+=..+=-++++. +.+.+ + .+.+.+-++ .++.+-. .-
T Consensus 788 vi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~sila-t~~n~~~~~~iln~l~~~a-----~~y~dpmmQksln~ 861 (980)
T KOG2021|consen 788 VIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILA-TDINRAILPVILNDLVTYA-----PQYIDPMMQKSLNV 861 (980)
T ss_pred HhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeee-ccchhhhhhHHHHHhhhcc-----ccccCHHHHHHHHH
Confidence 7776677887664 4445567777554433233332 22222 2 122222222 2222212 22
Q ss_pred HHHhccccCCCCchhHHHHHHHHHHhh--------hcccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHh
Q 013085 212 FLKSLSLFGEKAPTERMKELIGIIEGQ--------ADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKH 283 (449)
Q Consensus 212 lL~~l~~~~~~~p~~~~qeLv~~i~eq--------a~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~ 283 (449)
+++.+.++..+.+ | -.-.-+.+.+. +=++.+||-+|..+.--+-.|++.-.-.|- +.|..++.|+...
T Consensus 862 lcnk~v~lwggkd-g-~~gf~dfvlk~~~ln~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~e--k~gnecv~yL~q~ 937 (980)
T KOG2021|consen 862 LCNKIVCLWGGKD-G-DNGFKDFVLKIDGLNKCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFE--KSGNECVKYLTQI 937 (980)
T ss_pred HHHHHHHhcCCcC-C-ccccccceeecccccceeeecccCCcccccchHHHHHHHHHHHHHHHHH--HhchHHHHHHHHH
Confidence 3333333333332 1 00011222222 125788999999999988888887655554 4456999999999
Q ss_pred hccCCCCCChhhhHHHHHHHHhh
Q 013085 284 IIPVFDKLPEERKLDLLKALAEI 306 (449)
Q Consensus 284 VlP~l~~L~e~~kL~lLK~lAE~ 306 (449)
-+|..+ +|.+.-.+.+..|--+
T Consensus 938 ylPs~q-~pqela~qycqaLq~~ 959 (980)
T KOG2021|consen 938 YLPSIQ-LPQELAIQYCQALQTM 959 (980)
T ss_pred hccccc-CCHHHHHHHHHHHhcc
Confidence 999876 6665555555555444
No 143
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=20.62 E-value=1.2e+03 Score=27.35 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=47.8
Q ss_pred hccccc-cccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 90 RGLPLF-CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 90 k~Lp~l-ck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
.+.+.+ |||++.-.- |-|+|-+-...|..++.+....-.-.=...-+|..+-|=. -+-+.++.|..++..+
T Consensus 440 ~~~~~~~~~Dq~g~r~-----LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~---fe~~s~~q~~~ml~~~ 511 (777)
T COG5099 440 GPSIIVSCKDQHGSRF-----LQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKL---FEYGSEIQKSIMLSKS 511 (777)
T ss_pred cCccccccCCcHHHHH-----HHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHH---HHhccHHHHHHHHHHh
Confidence 333333 588764322 6677766666677766665544332222333444222211 0145678889999888
Q ss_pred hhhcccchhhhcC
Q 013085 169 RDKVFPLKAELLK 181 (449)
Q Consensus 169 ~~kl~~l~~e~l~ 181 (449)
..++..+.....+
T Consensus 512 ~~~~~~ls~~~~G 524 (777)
T COG5099 512 SKHLVSLSVHKYG 524 (777)
T ss_pred hhhHHHhhccccc
Confidence 8888887666553
No 144
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=20.52 E-value=1.6e+03 Score=27.50 Aligned_cols=253 Identities=19% Similarity=0.167 Sum_probs=129.4
Q ss_pred ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccc-hhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccch----
Q 013085 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV---- 137 (449)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~---- 137 (449)
-+...+.+..++.+.||.+..|.--|+|=|--+..--|++ +.-++|-|.-=+-+.-.+=++.-.-+|......=|
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 4556678899999999999999999999987666544444 66666666544333222223332233333322222
Q ss_pred -------hhHHHHHHHhhccCCCCCChHH-HHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHH
Q 013085 138 -------KASLTALFKHIGSVDEPSTDEF-IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF 209 (449)
Q Consensus 138 -------k~tL~~lf~qI~~~~~~~~ee~-~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~ 209 (449)
-.++++.+.+-.+ .+++.. +|=.++.-+++-+-..+. ++ | +++.-|....+--|+.--..=...-
T Consensus 122 ~~la~tV~~~~t~~l~~~i~---~qe~~sai~~e~lDil~d~lsr~g~-ll-~--~fh~~il~~l~~ql~s~R~aVrKka 194 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAIS---KQEDVSAIKCEVLDILADVLSRFGT-LL-P--NFHLSILKCLLPQLQSPRLAVRKKA 194 (1233)
T ss_pred cccccHHHHHHHHHHHHHhh---hcccchhhHHHHHHHHHHHHHhhcc-cC-c--chHHHHHHHHhhcccChHHHHHHHH
Confidence 1123444444331 233332 666666666544333321 22 1 2344443332222221100001111
Q ss_pred HHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhh-----hhhccCCChhhHHHHHHHhh
Q 013085 210 MDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMAL-----PFFLRGASGSKFLNYLNKHI 284 (449)
Q Consensus 210 m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~Al-----P~fS~~v~Stkfv~y~~~~V 284 (449)
...|+.+.++.+ ..=..++++-+.. +|.+ +..+..+.-.|+|+.... -|-++......++.=||+++
T Consensus 195 i~~l~~la~~~~---~~ly~~li~~Ll~--~L~~---~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 195 ITALGHLASSCN---RDLYVELIEHLLK--GLSN---RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHh--ccCC---CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 233444433311 1111223332222 3543 466778889999986542 12233444556666667666
Q ss_pred ccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCC
Q 013085 285 IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKT 335 (449)
Q Consensus 285 lP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~ 335 (449)
+.=+++.|--.|+.|--+--+|.. +.....+.|.+++++|+---|.
T Consensus 267 ----e~~dDELrE~~lQale~fl~rcp~-ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 267 ----EEDDDELREYCLQALESFLRRCPK-EILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHhChh-hhcccchHHHHHHHHHhccCCC
Confidence 322445566666666555555543 3466778899999999876653
No 145
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.06 E-value=1.3e+02 Score=19.62 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHHHhhccccccccCccchhhHHHHHHHHHh
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA 115 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq 115 (449)
||..|++.|-.+.- ++-.+.|.+.|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 78999999999864 556667777664
Done!