Query 013085
Match_columns 449
No_of_seqs 81 out of 83
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 100.0 6E-135 2E-139 1055.1 40.9 399 7-435 3-418 (507)
2 2vgl_B AP-2 complex subunit be 98.1 0.0011 3.9E-08 69.8 26.2 138 30-170 47-186 (591)
3 4fdd_A Transportin-1; heat rep 97.9 0.01 3.4E-07 64.5 29.6 306 29-362 125-476 (852)
4 4fdd_A Transportin-1; heat rep 97.8 0.00029 9.8E-09 76.6 16.3 284 36-331 94-410 (852)
5 1w63_A Adapter-related protein 97.7 0.0029 1E-07 67.3 20.8 131 36-170 74-205 (618)
6 2vgl_B AP-2 complex subunit be 97.6 0.018 6E-07 60.7 25.8 120 43-169 98-227 (591)
7 4hxt_A De novo protein OR329; 97.6 0.0043 1.5E-07 55.7 17.5 130 35-169 5-153 (252)
8 2vgl_A Adaptor protein complex 97.6 0.0097 3.3E-07 63.7 23.1 285 43-362 123-438 (621)
9 4db6_A Armadillo repeat protei 97.6 0.0033 1.1E-07 55.7 16.3 135 30-169 10-163 (210)
10 2jdq_A Importin alpha-1 subuni 97.5 0.014 4.7E-07 57.2 22.0 299 32-361 64-394 (450)
11 1b3u_A Protein (protein phosph 97.5 0.0076 2.6E-07 61.0 20.7 173 32-216 10-191 (588)
12 1qgr_A Protein (importin beta 97.5 0.0069 2.4E-07 64.6 20.9 303 37-361 95-441 (876)
13 1b3u_A Protein (protein phosph 97.5 0.0057 1.9E-07 61.9 19.1 256 35-314 284-554 (588)
14 4hxt_A De novo protein OR329; 97.5 0.0046 1.6E-07 55.5 16.1 133 33-170 45-196 (252)
15 2jdq_A Importin alpha-1 subuni 97.5 0.014 4.6E-07 57.3 20.6 296 34-363 22-354 (450)
16 1wa5_B Importin alpha subunit; 97.4 0.012 4E-07 60.3 20.8 133 32-169 87-240 (530)
17 2bpt_A Importin beta-1 subunit 97.4 0.14 4.9E-06 54.3 29.3 303 36-358 99-441 (861)
18 4b8j_A Importin subunit alpha- 97.4 0.013 4.6E-07 59.6 20.3 136 30-169 72-228 (528)
19 1ibr_B P95, importin beta-1 su 97.4 0.029 1E-06 54.8 21.9 304 37-361 95-441 (462)
20 4db8_A Armadillo-repeat protei 97.4 0.0045 1.5E-07 56.3 15.0 137 28-169 8-163 (252)
21 4db6_A Armadillo repeat protei 97.4 0.0019 6.4E-08 57.3 12.1 132 33-169 55-205 (210)
22 1ibr_B P95, importin beta-1 su 97.3 0.021 7.3E-07 55.8 20.4 296 37-359 43-397 (462)
23 2bpt_A Importin beta-1 subunit 97.3 0.018 6E-07 61.4 20.4 297 44-361 194-533 (861)
24 4b8j_A Importin subunit alpha- 97.3 0.0084 2.9E-07 61.1 17.3 131 34-169 119-269 (528)
25 1xqr_A HSPBP1 protein; armadil 97.2 0.0056 1.9E-07 60.0 14.2 133 33-170 82-235 (296)
26 3ltj_A Alpharep-4; protein eng 97.1 0.022 7.4E-07 50.4 16.4 121 29-169 11-132 (201)
27 1qgr_A Protein (importin beta 97.1 0.039 1.3E-06 58.9 21.1 297 44-356 187-540 (876)
28 3gs3_A Symplekin, LD45768P; he 97.1 0.0041 1.4E-07 60.5 12.4 139 8-169 30-169 (257)
29 4db8_A Armadillo-repeat protei 97.1 0.015 5.1E-07 52.8 15.5 132 33-169 55-205 (252)
30 1wa5_B Importin alpha subunit; 97.1 0.024 8.3E-07 57.9 18.7 132 33-169 131-282 (530)
31 1oyz_A Hypothetical protein YI 97.0 0.016 5.5E-07 54.0 14.7 115 43-169 103-217 (280)
32 3ltm_A Alpha-REP4; protein eng 97.0 0.041 1.4E-06 48.9 16.8 121 29-169 16-137 (211)
33 2qk2_A LP04448P; mini spindles 96.9 0.031 1E-06 51.5 15.5 154 43-203 27-190 (242)
34 1u6g_C TIP120 protein, CAND1; 96.8 0.16 5.4E-06 57.5 23.8 295 43-355 345-681 (1230)
35 3ltj_A Alpharep-4; protein eng 96.8 0.014 4.6E-07 51.7 11.7 146 31-196 44-195 (201)
36 3ltm_A Alpha-REP4; protein eng 96.7 0.014 4.8E-07 52.0 11.7 119 31-169 49-168 (211)
37 1u6g_C TIP120 protein, CAND1; 96.5 0.035 1.2E-06 62.8 15.4 131 35-169 89-239 (1230)
38 3o2t_A Symplekin; heat repeat, 96.4 0.032 1.1E-06 57.3 13.0 140 8-170 40-180 (386)
39 2z6g_A B-catenin; FULL-length, 96.3 0.16 5.6E-06 55.4 18.9 127 36-169 119-259 (780)
40 1oyz_A Hypothetical protein YI 96.2 0.077 2.6E-06 49.3 13.6 123 35-169 26-153 (280)
41 2vgl_A Adaptor protein complex 95.9 1.1 3.9E-05 47.7 22.8 276 34-326 76-377 (621)
42 3ul1_B Importin subunit alpha- 95.8 2 6.8E-05 44.1 25.9 117 33-149 58-195 (510)
43 2z6h_A Catenin beta-1, beta-ca 95.7 2.3 8E-05 44.6 24.0 131 33-169 99-249 (644)
44 1w63_A Adapter-related protein 95.6 0.46 1.6E-05 50.4 18.2 117 47-169 293-410 (618)
45 1jdh_A Beta-catenin; beta-cate 95.5 1.7 5.7E-05 43.4 21.1 130 34-169 103-252 (529)
46 1te4_A Conserved protein MTH18 95.5 0.025 8.6E-07 47.5 6.4 115 34-169 14-129 (131)
47 1te4_A Conserved protein MTH18 95.5 0.07 2.4E-06 44.7 9.1 83 34-128 44-127 (131)
48 3tpo_A Importin subunit alpha- 95.4 2.8 9.5E-05 43.1 23.0 118 32-149 76-214 (529)
49 1jdh_A Beta-catenin; beta-cate 95.3 2.3 8E-05 42.3 21.3 102 63-169 12-126 (529)
50 1xqr_A HSPBP1 protein; armadil 95.3 0.044 1.5E-06 53.7 8.3 121 43-169 52-192 (296)
51 2z6h_A Catenin beta-1, beta-ca 95.2 3.8 0.00013 43.0 23.8 296 31-357 55-382 (644)
52 2x19_B Importin-13; nuclear tr 94.6 3.2 0.00011 45.3 21.4 125 9-136 464-601 (963)
53 2qk2_A LP04448P; mini spindles 94.4 0.31 1E-05 44.7 11.2 73 60-134 90-162 (242)
54 2z6g_A B-catenin; FULL-length, 94.3 4.3 0.00015 44.2 21.6 129 34-168 152-300 (780)
55 3l9t_A Putative uncharacterize 93.9 0.39 1.3E-05 46.4 11.0 114 31-147 102-220 (240)
56 2qk1_A Protein STU2; STU2P, XM 93.8 0.41 1.4E-05 45.2 11.0 128 42-169 72-216 (249)
57 1wa5_C Importin alpha RE-expor 93.5 4 0.00014 45.1 19.9 266 44-332 471-772 (960)
58 3fga_B Serine/threonine-protei 93.4 2.7 9.2E-05 43.4 17.0 183 110-352 134-317 (403)
59 3gs3_A Symplekin, LD45768P; he 93.3 0.12 4E-06 50.3 6.2 81 62-150 47-127 (257)
60 3tpo_A Importin subunit alpha- 93.0 0.67 2.3E-05 47.7 11.9 100 34-133 295-405 (529)
61 3o2t_A Symplekin; heat repeat, 93.0 0.11 3.8E-06 53.3 5.9 73 61-133 56-128 (386)
62 2qk1_A Protein STU2; STU2P, XM 92.9 1.7 5.7E-05 41.0 13.6 136 33-175 20-177 (249)
63 3ul1_B Importin subunit alpha- 92.0 0.81 2.8E-05 47.0 10.9 131 34-169 276-426 (510)
64 2npp_B PP2A, B subunit, serine 91.7 2 6.9E-05 44.9 13.5 86 254-352 265-350 (449)
65 2x1g_F Cadmus; transport prote 91.6 9.1 0.00031 42.0 19.3 90 43-135 518-616 (971)
66 3ibv_A Exportin-T; karyopherin 91.5 8 0.00027 43.7 19.1 282 14-303 619-956 (980)
67 2jak_A Serine/threonine-protei 91.2 1.7 5.7E-05 44.8 12.0 85 255-352 278-362 (392)
68 1xm9_A Plakophilin 1; armadill 90.6 0.58 2E-05 47.6 8.0 92 43-134 14-116 (457)
69 2x1g_F Cadmus; transport prote 86.3 30 0.001 37.9 18.5 19 248-266 797-815 (971)
70 3tjz_B Coatomer subunit gamma; 86.0 2.9 0.0001 42.2 9.6 107 37-147 73-180 (355)
71 3opb_A SWI5-dependent HO expre 86.0 2.2 7.5E-05 47.5 9.3 96 68-170 606-725 (778)
72 3m1i_C Exportin-1; heat repeat 84.4 28 0.00095 38.9 17.4 81 57-137 529-621 (1049)
73 2x19_B Importin-13; nuclear tr 83.5 40 0.0014 36.6 17.9 121 43-171 115-266 (963)
74 3ibv_A Exportin-T; karyopherin 82.8 68 0.0023 36.1 23.4 262 42-337 506-800 (980)
75 3jxy_A Alkylpurine DNA glycosy 82.5 2.9 9.8E-05 39.2 7.3 111 46-168 112-222 (232)
76 3tt9_A Plakophilin-2; cell adh 82.5 4.3 0.00015 38.4 8.5 90 35-124 11-114 (233)
77 1hu3_A EIF4GII; heat repeat, t 81.9 7.3 0.00025 37.1 10.0 172 188-399 9-217 (260)
78 2b6c_A Hypothetical protein EF 81.6 5.6 0.00019 36.9 8.9 104 53-168 112-215 (220)
79 3nmw_A APC variant protein; AR 80.2 1.6 5.3E-05 43.6 4.8 69 69-137 264-337 (354)
80 2db0_A 253AA long hypothetical 79.8 8.2 0.00028 36.8 9.2 121 47-169 48-169 (253)
81 3now_A UNC-45 protein, SD10334 79.5 52 0.0018 36.7 17.1 118 11-149 8-131 (810)
82 3b2a_A TON_1937, putative unch 79.4 30 0.001 33.7 13.2 156 11-169 51-214 (265)
83 3now_A UNC-45 protein, SD10334 78.4 3 0.0001 46.6 6.7 29 69-97 624-652 (810)
84 3l6x_A Catenin delta-1; cateni 76.1 7.9 0.00027 41.5 9.0 105 30-134 46-163 (584)
85 1xm9_A Plakophilin 1; armadill 75.2 12 0.00042 37.7 9.8 95 70-168 4-111 (457)
86 3nmz_A APC variant protein; pr 74.9 2.4 8.3E-05 43.9 4.6 91 47-137 350-453 (458)
87 4ffb_C Protein STU2; tubulin f 70.4 23 0.00077 33.0 9.8 132 43-176 67-215 (278)
88 3nmw_A APC variant protein; AR 69.8 15 0.00053 36.4 8.9 53 68-120 214-278 (354)
89 3nmz_A APC variant protein; pr 67.5 14 0.00046 38.3 8.2 83 51-134 168-272 (458)
90 4hat_C Exportin-1; heat repeat 66.9 57 0.0019 37.1 13.7 291 68-402 495-835 (1023)
91 3tt9_A Plakophilin-2; cell adh 65.9 17 0.00058 34.2 7.9 66 70-135 10-82 (233)
92 4ady_A RPN2, 26S proteasome re 65.6 8 0.00027 44.1 6.4 113 29-148 574-693 (963)
93 3tjz_B Coatomer subunit gamma; 62.0 29 0.00099 34.9 9.1 128 60-200 59-187 (355)
94 1lrv_A LRV, leucine-rich repea 61.2 3.8 0.00013 39.0 2.4 53 54-126 43-95 (244)
95 2db0_A 253AA long hypothetical 60.3 1.2E+02 0.0041 28.9 13.3 92 66-162 30-125 (253)
96 3k62_A FEM-3 mRNA-binding fact 59.0 23 0.00077 36.1 7.9 211 91-329 30-261 (412)
97 3l6x_A Catenin delta-1; cateni 57.9 15 0.00052 39.3 6.6 97 65-165 45-155 (584)
98 3u0r_A Apoptosis inhibitor 5; 55.3 2.1E+02 0.0073 30.3 19.3 85 30-118 63-148 (507)
99 1lsh_A Lipovitellin (LV-1N, LV 55.2 2.7E+02 0.0094 31.5 21.0 116 29-148 353-480 (1056)
100 4ady_A RPN2, 26S proteasome re 53.2 64 0.0022 36.8 10.9 127 31-166 540-669 (963)
101 3l9t_A Putative uncharacterize 48.8 18 0.00063 34.8 4.9 74 33-106 140-216 (240)
102 2of3_A ZYG-9; multifunctional 48.0 1E+02 0.0035 29.7 10.1 95 68-169 132-232 (266)
103 2bnl_A Modulator protein RSBR; 47.1 33 0.0011 30.3 5.9 34 382-415 61-101 (136)
104 3m1i_C Exportin-1; heat repeat 46.8 1.9E+02 0.0065 32.2 13.4 276 68-358 344-681 (1049)
105 1lsh_A Lipovitellin (LV-1N, LV 44.1 82 0.0028 35.8 10.1 63 82-149 492-556 (1056)
106 3dad_A FH1/FH2 domain-containi 42.9 2.7E+02 0.0094 27.9 12.9 94 34-134 120-228 (339)
107 3b2a_A TON_1937, putative unch 42.1 91 0.0031 30.4 8.6 103 29-133 108-217 (265)
108 3fx7_A Putative uncharacterize 41.8 33 0.0011 28.6 4.7 33 383-415 49-81 (94)
109 1wa5_C Importin alpha RE-expor 40.5 36 0.0012 37.5 6.3 92 43-134 49-152 (960)
110 4ffb_C Protein STU2; tubulin f 40.0 2.2E+02 0.0076 26.1 13.8 65 248-312 151-216 (278)
111 3hjl_A Flagellar motor switch 39.9 34 0.0012 34.2 5.4 121 29-149 76-223 (329)
112 2w9y_A CE-FAR-7, fatty acid/re 37.8 7.1 0.00024 34.8 0.1 111 185-304 11-136 (140)
113 2of3_A ZYG-9; multifunctional 37.8 44 0.0015 32.3 5.7 61 34-98 169-237 (266)
114 2vso_E Eukaryotic initiation f 37.3 1.8E+02 0.0061 27.8 10.0 159 188-359 34-228 (284)
115 3gjx_A Exportin-1; transport, 36.9 5.3E+02 0.018 29.5 16.2 63 30-97 26-90 (1073)
116 3gvo_A Pumilio 2, pumilio homo 36.9 26 0.0009 34.2 4.1 195 92-331 28-229 (351)
117 1t06_A Hypothetical protein; s 34.6 1.4E+02 0.0047 27.8 8.5 81 55-139 99-185 (235)
118 3a6p_A Exportin-5; exportin-5, 34.5 1.5E+02 0.005 34.1 10.3 99 34-132 531-655 (1204)
119 3grl_A General vesicular trans 32.1 60 0.002 35.5 6.1 115 49-169 108-237 (651)
120 2c9l_Y EB1, zebra, BZLF1 trans 32.1 89 0.0031 23.7 5.3 41 389-435 5-46 (63)
121 3oc3_A Helicase MOT1, MOT1; re 31.8 1.4E+02 0.0047 33.0 8.7 30 188-219 337-366 (800)
122 1lrv_A LRV, leucine-rich repea 29.9 24 0.00082 33.5 2.4 85 39-165 153-238 (244)
123 3v71_A PUF (pumilio/FBF) domai 29.8 4.2E+02 0.014 26.2 12.6 204 91-330 21-241 (382)
124 3oc3_A Helicase MOT1, MOT1; re 28.3 51 0.0017 36.3 4.7 89 40-133 271-360 (800)
125 1ho8_A Vacuolar ATP synthase s 28.2 46 0.0016 35.0 4.3 53 43-95 417-474 (480)
126 4at7_B NF90, interleukin enhan 28.1 1.7E+02 0.0059 29.9 8.4 76 255-334 207-289 (383)
127 3grl_A General vesicular trans 26.9 6.5E+02 0.022 27.4 21.4 144 8-169 20-191 (651)
128 3s4w_B Protein FACD2, fanconi 23.4 1.5E+02 0.005 35.1 7.7 84 66-151 155-254 (1323)
129 2ozb_B U4/U6 small nuclear rib 23.0 87 0.003 30.3 4.9 39 29-67 12-54 (260)
130 3rk6_A Polyadenylate-binding p 22.8 3.6E+02 0.012 25.2 9.1 153 190-361 19-193 (234)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=100.00 E-value=6.5e-135 Score=1055.15 Aligned_cols=399 Identities=36% Similarity=0.599 Sum_probs=379.6
Q ss_pred hhHHHHHHHHHhhhhhhcccc-ccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHH
Q 013085 7 EAKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (449)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akd~-~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (449)
.|++||+||++||||+||+|+ ++|+++|++||+|+||++|+|||||||||||||+||+|+++|||||+|||||+|++||
T Consensus 3 ~~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR 82 (507)
T 3u0r_A 3 HMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIR 82 (507)
T ss_dssp --CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred CcchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHH
Confidence 467799999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHH
Q 013085 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (449)
Q Consensus 86 ~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l 165 (449)
+||||+||.|||+ +|++||||||+|||||||++|+++|||||++|+++|||+||+|+|+||. ++||.+|||+|
T Consensus 83 ~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~l 155 (507)
T 3u0r_A 83 RQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAI 155 (507)
T ss_dssp HHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHH
T ss_pred HHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999999999999999 67899999999
Q ss_pred HHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCC
Q 013085 166 SFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQF 245 (449)
Q Consensus 166 ~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f 245 (449)
+||++|+++++.+++ ++|+|++|+++|||+|+|||++||++||++|+++++|++ |+| +|+||+++.+||+|+.+|
T Consensus 156 kFi~~kl~~l~~~~l--~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~~g-~qeLv~ii~eQa~L~~~f 230 (507)
T 3u0r_A 156 KFLSTKLKTLPDEVL--TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--VSG-RQQLVELVAEQADLEQTF 230 (507)
T ss_dssp HHHHHHGGGSCTTTS--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--HHH-HHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhhcchhhc--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--chH-HHHHHHHHHHHHhccCCC
Confidence 999999999999999 589999999999999999999999999999999999966 766 799999999999999999
Q ss_pred CCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChh-----hhHHHHHHHHhhCCCCC-hhhHhhhh
Q 013085 246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQIL 319 (449)
Q Consensus 246 ~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~-----~kL~lLK~lAE~s~~~~-~~da~~~l 319 (449)
+++|+++|||+|+|+++|+||||+|++|++||+|+|++|||+|++|++. +||++||+||||||||| .++++++|
T Consensus 231 ~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l 310 (507)
T 3u0r_A 231 NPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNL 310 (507)
T ss_dssp CSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHH
Confidence 9999999999999999999999999999999999999999999999764 89999999999999999 66699999
Q ss_pred HHHHHHHHhhCCCCCCC----------CCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHH
Q 013085 320 PSVAVLLKKYMPLRKTG----------GEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYK 389 (449)
Q Consensus 320 ~~i~~~L~~ymP~~~~~----------~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~k 389 (449)
++||++|++|||+||++ .++|||||||||||+|||||+|+|+|+++ +|++++||
T Consensus 311 ~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~lk 374 (507)
T 3u0r_A 311 RKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEKLK 374 (507)
T ss_dssp HHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCTTH
T ss_pred HHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHHHH
Confidence 99999999999999972 36899999999999999999999999843 35699999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHhhhcchhhHHHHHHh
Q 013085 390 DFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSL 435 (449)
Q Consensus 390 dF~~RLqy~~~~~q~yikkL~~~l~~~~K~~~~~kteenk~kv~~~ 435 (449)
|||.|||||+||+|+|||||+++|+ ||+++++||||||+||++.
T Consensus 375 dfr~RLqy~ar~~q~yikkL~~~~~--~K~~~~~kteenk~kv~al 418 (507)
T 3u0r_A 375 DFKIRLQYFARGLQVYIRQLRLALQ--GKTGEALKTEENKIKVVAL 418 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--TCCTTGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhhcchHHHHHHHHH
Confidence 9999999999999999999999997 8999999999999999875
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.09 E-value=0.0011 Score=69.83 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=110.0
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
....|-.++.... .+...||++.-.+..+++.-|++.--++|++..-+.|.++.||..|++.|..++ +++.+.-+..
T Consensus 47 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~ 124 (591)
T 2vgl_B 47 VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCE 124 (591)
T ss_dssp CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHH
Confidence 3455777777776 778999999999999999999999999999999999999999999999999996 6788888888
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHccchhhHHH-HHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT-ALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 109 VL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~-~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.|.++|...+|.-+..+=.+|..+++.+|...-. +++..+... -.+.+..||.-++.-|.+
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT-TSCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHH-hCCCChhHHHHHHHHHHH
Confidence 8999999999988888888888888888763321 222222211 014455799988887764
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.89 E-value=0.01 Score=64.51 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=172.9
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccc---------hHHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL---------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L---------~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~ 98 (449)
.-.+....++.... ++...+.-|...+.+.++.+|.. -+..+..++.+..|.+..||..|++.|-.+++.
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34455666777666 67889999999999999998876 345778888999999999999999999999876
Q ss_pred Ccc----chhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh-------HHHHHHHhhccCCCCCChHHHHHHHHHH
Q 013085 99 TPE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA-------SLTALFKHIGSVDEPSTDEFIREKVLSF 167 (449)
Q Consensus 99 ~~e----~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~-------tL~~lf~qI~~~~~~~~ee~~Re~~l~F 167 (449)
.++ ++..+...|.++++.+++..+..+-++|..+.+..|+. .+..+...+. +.++.+|..++.|
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-----DQDENVALEACEF 279 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-----CSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHH
Confidence 653 34556667777788888888888888999998877642 2233333332 4567899999999
Q ss_pred Hhhhccc-chhhhcCChHHHHHHHHHHHHhhc-----------cccchHHH-----------HHHHHHHHhccccCCCCc
Q 013085 168 IRDKVFP-LKAELLKPQEEMERHITDLIKKSL-----------EDVTGAEF-----------RMFMDFLKSLSLFGEKAP 224 (449)
Q Consensus 168 l~~kl~~-l~~e~l~~~~E~E~~i~~~ikK~L-----------~dVt~~EF-----------~l~m~lL~~l~~~~~~~p 224 (449)
+..=... .-.+.+.| -+.. ++..+.+.| +|...++. ..-...|..+-.. .+
T Consensus 280 l~~l~~~~~~~~~~~~--~~~~-l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~---~~ 353 (852)
T 4fdd_A 280 WLTLAEQPICKDVLVR--HLPK-LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV---YR 353 (852)
T ss_dssp HHHHTTSTTHHHHHTT--THHH-HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH---HG
T ss_pred HHHHhcchhHHHHHHH--HHHH-HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh---cc
Confidence 8742211 11122211 1222 223333333 12100000 0011111111100 01
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhccCCCh--hhHHHHHHHhhccCCCCCChhhhHHHHHH
Q 013085 225 TERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASG--SKFLNYLNKHIIPVFDKLPEERKLDLLKA 302 (449)
Q Consensus 225 ~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~S--tkfv~y~~~~VlP~l~~L~e~~kL~lLK~ 302 (449)
..-...++.++.+.. ...++..-.--+ .|+--+..+... ..++..+...+++.+++=....|-.....
T Consensus 354 ~~~~~~l~~~l~~~l------~~~~~~~R~aa~----~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~ 423 (852)
T 4fdd_A 354 DELLPHILPLLKELL------FHHEWVVKESGI----LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWT 423 (852)
T ss_dssp GGGHHHHHHHHHHHH------TCSSHHHHHHHH----HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------cCCCHHHHHHHH----HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111233444444431 112222212222 222222222211 13455555566666665445566666777
Q ss_pred HHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCcc
Q 013085 303 LAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 362 (449)
Q Consensus 303 lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~ 362 (449)
+..++.+++.......+..+...|.+.+-. -+...-+....++.+++...+..
T Consensus 424 l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-------~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 424 LSRYAHWVVSQPPDTYLKPLMTELLKRILD-------SNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhhHh
Confidence 766665544333345666677777776632 24577788888888888766543
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.83 E-value=0.00029 Score=76.60 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=161.2
Q ss_pred HHHHHcc-CCHHHHHHHhhhhhHhhcc-CccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccch---------h
Q 013085 36 GIIEAAK-TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL---------S 104 (449)
Q Consensus 36 ~Il~~~k-g~~k~K~LaAqfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v---------~ 104 (449)
.++.+.. .++.+++-+|+.|...+++ ||.--.+.+..++.++.+.+..+|..|+..|-.+|++.++.. .
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 3444444 6788999999999998876 677777789999999999999999999999999999887663 3
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh-------hHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchh
Q 013085 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA 177 (449)
Q Consensus 105 kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k-------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~ 177 (449)
.+...|.++|+.+++.-+..+-++|..+++..+. ..+..++.-+. ++++.+|..++.-|..-. ...+
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-----d~~~~vr~~a~~~L~~l~-~~~~ 247 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-----DEEPEVRKNVCRALVMLL-EVRM 247 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHH-HHCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHH-HhCH
Confidence 4555566667777776677777788777765543 34456665443 556789987777665322 2222
Q ss_pred hhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcccc---CCCCchhHHHHHHHHHHhhhcc--------cCC--
Q 013085 178 ELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF---GEKAPTERMKELIGIIEGQADL--------DAQ-- 244 (449)
Q Consensus 178 e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~---~~~~p~~~~qeLv~~i~eqa~L--------d~~-- 244 (449)
+.+.+ -++. ++..+-+.++|....=....++++..+.-- ....++. ...++..+...... +++
T Consensus 248 ~~~~~--~l~~-l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~-~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 248 DRLLP--HMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH-LPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp HHHGG--GHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT-HHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred HHHHH--HHHH-HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 33322 2222 445555566653321112224444443210 0000111 35677777665310 011
Q ss_pred CCCCChhh--HHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHH
Q 013085 245 FNVSDADH--IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSV 322 (449)
Q Consensus 245 f~~sD~d~--vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i 322 (449)
-+..|.+. --++-.+.-.++..++...+ ...+..+...+...+++=....|...+..+..++..|+. .....++.+
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~ 401 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPEL 401 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHH
Confidence 01111000 00112222333333332211 233333333333333332346677889999999998874 334577888
Q ss_pred HHHHHhhCC
Q 013085 323 AVLLKKYMP 331 (449)
Q Consensus 323 ~~~L~~ymP 331 (449)
...|...+-
T Consensus 402 l~~l~~~l~ 410 (852)
T 4fdd_A 402 IPHLIQCLS 410 (852)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888888874
No 5
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.67 E-value=0.0029 Score=67.30 Aligned_cols=131 Identities=8% Similarity=0.044 Sum_probs=103.2
Q ss_pred HHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHH
Q 013085 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (449)
Q Consensus 36 ~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLL 114 (449)
.++.... .+-..||++--.+..|++.=|++.--++|++..-+.|.++.||-.|++.|..++ +++.+.-+...+.++|
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 3333333 567889999999999999999999999999998899999999999999999997 4688888889999999
Q ss_pred hcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 115 AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 115 qtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.+.+|.-+...=.++..+++.+|. .+..++..+... -...+..|+.-++..|.+
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~l-L~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNL-LNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTS-TTCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHH-hCCCCHhHHHHHHHHHHH
Confidence 999988888888888888888886 334555554422 112344688877776653
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.63 E-value=0.018 Score=60.73 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=98.7
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchh--hHHHHHHHHHhcchhH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEEIV 120 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~--kiaDVL~QLLqtdd~~ 120 (449)
+++-.+.+|-..+.+.. -|++.+.-+..+..+..|.++.||+.|+..+..+++.+|+.+. .+.+.|.++|+..++.
T Consensus 98 ~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp SSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred CCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChh
Confidence 67888999999888874 7889999999999999999999999999999999999999887 5889999999988877
Q ss_pred HHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 121 ERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 121 E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
-+..+=.+|..+...+|. ..+..++..+. ..++-.+-++++.+.
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-----~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-----ECTEWGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-----CCCchHHHHHHHHHH
Confidence 777777777777776663 34777777765 445667778887764
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.58 E-value=0.0043 Score=55.68 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=101.2
Q ss_pred HHHHHHcc-CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccchhh---
Q 013085 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (449)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k--- 105 (449)
..++...+ +++.++.-|+..|.......|+... .++..++.+..+.+..||.+|...|-.+|.+++++...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44555555 6678888888888888887774443 47899999999999999999999999999987776553
Q ss_pred --HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 106 --IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 106 --iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+.|.++|+++++.-+..+-.+|..+...++. +.+..+..-+. ++++.+|..++..|.
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALA 153 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 577889999988877777888888888865554 45667776655 556778888887776
No 8
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.57 E-value=0.0097 Score=63.72 Aligned_cols=285 Identities=11% Similarity=0.135 Sum_probs=163.4
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhh--cccchhHHHHHhhccccccccCccchh--hHHHHHHHHHhcch
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLI--EEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEE 118 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLc--EDed~~IR~qAik~Lp~lck~~~e~v~--kiaDVL~QLLqtdd 118 (449)
+++-.+-||-..+.+.- =|++.+.-+..+..++ .|.++-||+.|+=.+..+++-+|+.++ ...+.|.++|...+
T Consensus 123 ~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG--SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp CCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC
Confidence 44555666666666653 3666777777777788 899999999999999999999999998 89999999998878
Q ss_pred hHHHHHHHHHHHHHHccchhh---HHH---HHHHhhccC-CCC-CC-------hHHHHHHHHHHHhhhcccchhhhcCCh
Q 013085 119 IVERDAVHKALMSLLRQDVKA---SLT---ALFKHIGSV-DEP-ST-------DEFIREKVLSFIRDKVFPLKAELLKPQ 183 (449)
Q Consensus 119 ~~E~~~V~~sL~~ll~~d~k~---tL~---~lf~qI~~~-~~~-~~-------ee~~Re~~l~Fl~~kl~~l~~e~l~~~ 183 (449)
+.-+..+-.+|.++...+|.. .+. .++.++... +.| .+ ++-.+-++|+++.. +.+. ..
T Consensus 201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~-~~~~------~d 273 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC-YPPP------ED 273 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG-SSSC------SS
T ss_pred ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH-hCCC------CC
Confidence 877777667777777777653 112 223343321 111 11 46789999998873 2221 11
Q ss_pred HHHHHHHHHHHHhhccc---cc--------hHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhh
Q 013085 184 EEMERHITDLIKKSLED---VT--------GAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (449)
Q Consensus 184 ~E~E~~i~~~ikK~L~d---Vt--------~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~ 252 (449)
.+..+.+.+.+..+++- .+ ...--.+++..+.+-.+. ..|+. ++..++.+... +..+|++.
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~-~~~~~~~L~~~------L~~~~~ni 345 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNL-LVRACNQLGQF------LQHRETNL 345 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHH-HHHHHHHHHHH------SSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHH------hcCCCcch
Confidence 24444444444444321 11 001111222222221111 12222 23334433322 22334432
Q ss_pred HHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCC-CCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCC
Q 013085 253 IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD-KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 331 (449)
Q Consensus 253 vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~-~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP 331 (449)
|++..-.. .-+..+. ++..++.-....+++.+. +=+...|..-|.++..++. ..++..|...|++|+.
T Consensus 346 --ry~aL~~l-~~l~~~~-~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-------~~Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 346 --RYLALESM-CTLASSE-FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-------RSNAQQIVAEMLSYLE 414 (621)
T ss_dssp --HHHHHHHH-HHHTTCT-TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHH-HHHHhcc-CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-------hhhHHHHHHHHHHHHH
Confidence 33221111 1111211 223445544556666665 5555677777777777743 3467888888999995
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhhhcCCcc
Q 013085 332 LRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 362 (449)
Q Consensus 332 ~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~ 362 (449)
. ....+++-+.-+.+.+|.|.|..
T Consensus 415 ~-------~d~~~~~~~v~~I~~la~k~~~~ 438 (621)
T 2vgl_A 415 T-------ADYSIREEIVLKVAILAEKYAVD 438 (621)
T ss_dssp H-------CCHHHHHHHHHHHHHHHHHHCSS
T ss_pred h-------cCHHHHHHHHHHHHHHHHhcCCc
Confidence 3 34577888888999999887753
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.55 E-value=0.0033 Score=55.68 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=101.7
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccch
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v 103 (449)
....|..+....+ +++.++.-|+..|......-|+... .++..++.+..++++.||.+|...|-.+|.+++++.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3445666666666 7788888999999888877776654 477899999999999999999999999999887775
Q ss_pred hhH-----HHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 104 SKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 104 ~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+ ...|.++|+++++.-...+-.+|..+...++. +.+..+..-+. +++..+|+.++..|.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALS 163 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 554 46899999998887777777788877754443 34555665554 456778888877665
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.55 E-value=0.014 Score=57.22 Aligned_cols=299 Identities=11% Similarity=0.048 Sum_probs=166.1
Q ss_pred HhHHHHHHHcc-C-CHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchh
Q 013085 32 KDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 32 ~~y~~Il~~~k-g-~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ 104 (449)
.....++...+ + ++.++.-|+..+......-|+.. ..++..++.++.++++.||.+|+..|..++.+++++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 44666666666 5 68999999999999888666543 45889999999999999999999999999998866543
Q ss_pred -----hHHHHHHHHHhc-chhHHHHHHHHHHHHHHccc-h-------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 105 -----KIVDILVQLLAA-EEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 105 -----kiaDVL~QLLqt-dd~~E~~~V~~sL~~ll~~d-~-------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.+...|.++|++ +++.-+..+-.+|..+...+ | .+.+..+..-+. ++++.+|..+..-|..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDVLADACWALSY 218 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHH
Confidence 356788999985 46666777778888888654 3 466777777665 5667888877665542
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHH-----HHHHHHhhhcccCCC
Q 013085 171 KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-----LIGIIEGQADLDAQF 245 (449)
Q Consensus 171 kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qe-----Lv~~i~eqa~Ld~~f 245 (449)
=...-+ +.. ..-.+.-++..+-+.|.+-...-.......|..+-. ..+ ...+. ++..+... +
T Consensus 219 l~~~~~-~~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~-~~~~~~~~~~~l~~L~~l------l 285 (450)
T 2jdq_A 219 LSDGPN-DKI--QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT---GDD-IQTQVILNCSALQSLLHL------L 285 (450)
T ss_dssp HTSSSH-HHH--HHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SCH-HHHHHHHTTTHHHHHHHH------T
T ss_pred HHCCCc-HHH--HHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh---CCh-HHHHHHHHCccHHHHHHH------H
Confidence 111100 000 000111223333344444322212223344444422 222 11222 22222221 1
Q ss_pred CCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHH-HhhccCCCCC----ChhhhHHHHHHHHhhCCCCChhhHhhhhH
Q 013085 246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSRQILP 320 (449)
Q Consensus 246 ~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~-~~VlP~l~~L----~e~~kL~lLK~lAE~s~~~~~~da~~~l~ 320 (449)
...++......+.++.. ++.+. ......+. ..++|.+-.+ .++.|......++.++...+......++.
T Consensus 286 ~~~~~~vr~~a~~~L~~----l~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 286 SSPKESIKKEACWTISN----ITAGN--RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp TCSSHHHHHHHHHHHHH----HTTSC--HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH----HHcCC--HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22233333333333322 22222 22222222 3555544332 34567776666666655433322222221
Q ss_pred -HHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 321 -SVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 321 -~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
.+...|...+.. -+....+..+.++.+++...|.
T Consensus 360 ~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 360 LGCIKPLCDLLTV-------MDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HTCHHHHHHGGGS-------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHhchh
Confidence 244455555532 1346778888888888877665
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.54 E-value=0.0076 Score=60.95 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=112.6
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCcc--chHHHHHHhhhhhcccchhHHHHHhhcccccccc--CccchhhH
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKI 106 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~--~~e~v~ki 106 (449)
.....++...+ ++++.+.-|++-+......++. ..++.+..+.+.+ |++..||..+.+.|..++.. .++++..+
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~l 88 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGG
T ss_pred CcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 33556777776 7788888888888887776543 2234556666666 77889999999999999863 56788889
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHH----HHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCC
Q 013085 107 VDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL----TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKP 182 (449)
Q Consensus 107 aDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL----~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~ 182 (449)
..+|.++++.+++.-+...-.+|..+....|...+ -.++.++.. +++..+|..+...+..-...++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~----~~~~~~R~~a~~~l~~~~~~~~------ 158 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG----GDWFTSRTSACGLFSVCYPRVS------ 158 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT----CSSHHHHHHHGGGHHHHTTTSC------
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhcC------
Confidence 99999998888888899999999999887665433 334444432 3345678777665543211111
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHhc
Q 013085 183 QEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSL 216 (449)
Q Consensus 183 ~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l 216 (449)
......+...+.+.++|-+..-.......|..+
T Consensus 159 -~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 159 -SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEF 191 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 233445555555566654333333334444433
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.52 E-value=0.0069 Score=64.63 Aligned_cols=303 Identities=11% Similarity=0.090 Sum_probs=157.4
Q ss_pred HHHHcc-CCHHHHHHHhhhhhHhhcc-Cc-cchHHHHHHhhhhhccc--chhHHHHHhhccccccccC-----ccchhhH
Q 013085 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FP-DLSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (449)
Q Consensus 37 Il~~~k-g~~k~K~LaAqfI~kffk~-FP-~L~e~Ai~a~lDLcEDe--d~~IR~qAik~Lp~lck~~-----~e~v~ki 106 (449)
++.+.. .+++. +-+++.|...++. || +--.+.+..++.++.++ +..+|..|++.|..+|+.- ..+++.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 555554 55666 7788888876664 34 44456788888899999 9999999999999999863 3567788
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHccchh---------hHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccc
Q 013085 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQDVK---------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (449)
Q Consensus 107 aDVL~QLLqtd--d~~E~~~V~~sL~~ll~~d~k---------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l 175 (449)
...|.+.|+.+ ++..+..+=++|..++..-+. ..+..++..+. ..++.+|..+++++..-+...
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHh
Confidence 88888888876 355566666777776542111 12444444332 456779988888776433222
Q ss_pred hhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcccc--------------C----CCCchh---HHHHHHHH
Q 013085 176 KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF--------------G----EKAPTE---RMKELIGI 234 (449)
Q Consensus 176 ~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~--------------~----~~~p~~---~~qeLv~~ 234 (449)
+. .+ .+.+...++..+-+.+.+....=....++++..+-.. + ...... -.++++..
T Consensus 249 ~~-~~--~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 249 YQ-YM--ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp GG-GC--HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HH-HH--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 21 11 1112212333333333332111011112222211100 0 000000 11445554
Q ss_pred HHhhhc-ccCCCCCCChhhHH-HHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCCh
Q 013085 235 IEGQAD-LDAQFNVSDADHID-RLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP 312 (449)
Q Consensus 235 i~eqa~-Ld~~f~~sD~d~vd-rli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~ 312 (449)
+..... .+.+-+ .|...+. --..|+......+. ...+..+...+...+++-....|-..+..+..++..+++
T Consensus 326 ll~~l~~~~~d~~-~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~ 399 (876)
T 1qgr_A 326 LTQTLTKQDENDD-DDDWNPCKAAGVCLMLLATCCE-----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp HHHHTTCCCSSCC-TTCCCHHHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHhhccccccc-ccccHHHHHHHHHHHHHHHHCc-----HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH
Confidence 444321 111100 1111111 11122222221221 123333333344444443345677889999999988874
Q ss_pred hhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 313 QDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 313 ~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
......++.+...|...+-. -+..+-+..+.++.+++...|.
T Consensus 400 ~~~~~~~~~~l~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 400 SQLKPLVIQAMPTLIELMKD-------PSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHhCch
Confidence 43334566677777766632 1244556666777777766554
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.50 E-value=0.0057 Score=61.88 Aligned_cols=256 Identities=12% Similarity=0.084 Sum_probs=133.4
Q ss_pred HHHHHHcc-CCHHHHHHHhhhhhHhhccCcc------chHHHHHHhhhhhcccchhHHHHHhhccccccccCc--cchhh
Q 013085 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD------LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--EYLSK 105 (449)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~------L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~--e~v~k 105 (449)
..++...+ .++.+++-|++.++++.+..+. ..+..+..+..++.|.+..||..|.+.|..++..-+ ...+.
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 363 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 34444555 6678888888888888887764 245667777788888888899998888888875321 22456
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh-----hHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhc
Q 013085 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-----ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180 (449)
Q Consensus 106 iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k-----~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l 180 (449)
+..+|.++|+.+++.-+..+-++|..+.+.-+. ..+..+...+. +.+..+|..++..|..=...++.+..
T Consensus 364 l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~ 438 (588)
T 1b3u_A 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-----DAKWRVRLAIIEYMPLLAGQLGVEFF 438 (588)
T ss_dssp THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHcCHHHH
Confidence 677788888766655555555566555543221 22333333222 33446787777666532222333322
Q ss_pred CChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhc-cccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHH
Q 013085 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSL-SLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISC 259 (449)
Q Consensus 181 ~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l-~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~C 259 (449)
...+...+.+.|+|-...=-..-...|..+ +.++. ..-...++..+... ....+...-...+.|
T Consensus 439 ------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~------~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 439 ------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAM------SGDPNYLHRMTTLFC 503 (588)
T ss_dssp ------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHT------TTCSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHH------hhCCCHHHHHHHHHH
Confidence 123555555566654321111111112111 11111 00123344443321 111222222223344
Q ss_pred HHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhh
Q 013085 260 LYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD 314 (449)
Q Consensus 260 l~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~d 314 (449)
+....+.+. ...|...+...++..+++=.++.|...++.++.++...|...
T Consensus 504 l~~l~~~~~----~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 504 INVLSEVCG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHHHH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHhcC----HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 443333322 122222222223333443345789999999999998887644
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.46 E-value=0.0046 Score=55.52 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=104.3
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccchh--
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-- 104 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~-- 104 (449)
....++...+ +++.++.-|+..+.....+-|+..+ .++..++.+..+++..||..|...|-.+|..++++..
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556666666 7789999999999999887777666 4789999999999999999999999999988877655
Q ss_pred ---hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh--------HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 105 ---KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 105 ---kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~--------tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.....|.++|.++++.-...+-.+|..+...++.. .+..+..-+. ++++.+|+.++..|..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 196 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 35678999999888777777777777776655432 5566665554 5567888888887763
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.45 E-value=0.014 Score=57.26 Aligned_cols=296 Identities=10% Similarity=0.065 Sum_probs=166.1
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhc--cCccchH-----HHHHHhhhhhccc-chhHHHHHhhccccccccCccchh
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFK--FFPDLSS-----RAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk--~FP~L~e-----~Ai~a~lDLcEDe-d~~IR~qAik~Lp~lck~~~e~v~ 104 (449)
...++...+ +++.+++.|++.+.+... .-|..+. .++..++.++.++ +..||..|.+.|..+|.+++++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455666555 778899999999999764 3444332 6788999999988 899999999999999998777654
Q ss_pred -----hHHHHHHHHHhcchhHHHHHHHHHHHHHHccch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhh
Q 013085 105 -----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (449)
Q Consensus 105 -----kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~k 171 (449)
.+...|.++|+++++.-+..+-.+|..+...++ .+.+..+...+.. +.+..+|+.++..|..=
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHH
Confidence 456789999999888888888888888877654 2455666655541 24567898888766632
Q ss_pred cccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHH-----HHHHHhhhcccCCCC
Q 013085 172 VFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDAQFN 246 (449)
Q Consensus 172 l~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeL-----v~~i~eqa~Ld~~f~ 246 (449)
...-.+.. ......-++..+.+.|.+-...-.......|..+... .+ ...+.+ +..+... +.
T Consensus 178 ~~~~~~~~---~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~---~~-~~~~~~~~~~~i~~L~~l------l~ 244 (450)
T 2jdq_A 178 CRGKSPPP---EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG---PN-DKIQAVIDAGVCRRLVEL------LM 244 (450)
T ss_dssp HCCSSSCC---CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---SH-HHHHHHHHTTTHHHHHHH------TT
T ss_pred hCCCCCCC---CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC---Cc-HHHHHHHHcCcHHHHHHH------HC
Confidence 21110000 0000112233334444432222222234445544321 11 111111 1222221 12
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHH-Hhhcc----CCCCCChhhhHHHHHHHHhhCCCCChhh----Hhh
Q 013085 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIP----VFDKLPEERKLDLLKALAEISPYTTPQD----SRQ 317 (449)
Q Consensus 247 ~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~-~~VlP----~l~~L~e~~kL~lLK~lAE~s~~~~~~d----a~~ 317 (449)
..|++.....+.++ -.++.+.. .....+. ..++| .++.=.+..|...+..+..++..+...- ...
T Consensus 245 ~~~~~v~~~a~~~L----~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 245 HNDYKVVSPALRAV----GNIVTGDD--IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp CSCHHHHHHHHHHH----HHHTTSCH--HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHH----HHHhhCCh--HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 23343333333333 22333221 1122221 13344 3333234678888899999887543221 134
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhc-CCccc
Q 013085 318 ILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNAT 363 (449)
Q Consensus 318 ~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k-~P~~l 363 (449)
.++.+.+.|.. -+....+...+++.+++.. .|+..
T Consensus 319 ~l~~L~~~l~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 319 IFPALISILQT-----------AEFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp HHHHHHHHHHH-----------SCHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 56666666653 1235667778888888876 45433
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.44 E-value=0.012 Score=60.28 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=100.4
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccC--ccc----hHHHHHHhhhhhccc-chhHHHHHhhccccccccCccch
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~F--P~L----~e~Ai~a~lDLcEDe-d~~IR~qAik~Lp~lck~~~e~v 103 (449)
.....++...+ +++..++.|++.+.+..... |.. ...++..++.+..++ ++.||..|...|..+|.+++++.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45677777777 77889999999999998764 322 245788999999997 89999999999999999887765
Q ss_pred hh-----HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 104 SK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 104 ~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.. +...|.++|+++++.-+..+-++|..+...++. +.+..+...+. +.+..+|..++..|.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-----SNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-----SCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-----cCCHHHHHHHHHHHH
Confidence 43 467899999988888788888888887765432 45566666655 345567776665554
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.40 E-value=0.14 Score=54.31 Aligned_cols=303 Identities=12% Similarity=0.104 Sum_probs=160.6
Q ss_pred HHHHHcc-CCHHHHHHHhhhhhHhhcc-Ccc-chHHHHHHhhhhhccc-chhHHHHHhhccccccccC-------ccchh
Q 013085 36 GIIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDT-------PEYLS 104 (449)
Q Consensus 36 ~Il~~~k-g~~k~K~LaAqfI~kffk~-FP~-L~e~Ai~a~lDLcEDe-d~~IR~qAik~Lp~lck~~-------~e~v~ 104 (449)
.++.+.. .++..++-+|+.|...+++ ||. --.+.+..+++++.++ |..+|..|++-|-.+|++- ..++.
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 4555555 6788899999999998876 674 5578899999999999 9999999999999998853 24677
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHcc---c--h----hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcc
Q 013085 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQ---D--V----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (449)
Q Consensus 105 kiaDVL~QLLqtd--d~~E~~~V~~sL~~ll~~---d--~----k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~ 173 (449)
.+...|.+.|+.+ ++.-+..+-++|..++.. + . ...+..++..+. ++++.+|..++.-+..-+.
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-----AEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHH
Confidence 7777778888765 455566666676665321 1 1 123455554333 5567899888776653322
Q ss_pred cchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCC----------C----Cc---hhHHHHHHHHHH
Q 013085 174 PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGE----------K----AP---TERMKELIGIIE 236 (449)
Q Consensus 174 ~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~----------~----~p---~~~~qeLv~~i~ 236 (449)
..+ +.+ .+-+...++..+-+.+.|....=....++++..+-.... . .+ ..-...++..+.
T Consensus 254 ~~~-~~~--~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 330 (861)
T 2bpt_A 254 KYY-TFM--KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL 330 (861)
T ss_dssp HHG-GGC--HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHH-HHH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 222 222 122222344444555555332111222333333211000 0 00 001234555554
Q ss_pred hhhc-ccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhH
Q 013085 237 GQAD-LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDS 315 (449)
Q Consensus 237 eqa~-Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da 315 (449)
.... -+.+-+ .|.-.+. .+...++-.++... +...+..+...+...+++-....|--.+..++.++..|+....
T Consensus 331 ~~l~~~~~d~~-d~~~~~r---~~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~ 405 (861)
T 2bpt_A 331 NLLTRQNEDPE-DDDWNVS---MSAGACLQLFAQNC-GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR 405 (861)
T ss_dssp HHTTCCCCC-C-CCCCHHH---HHHHHHHHHHHHHH-GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHHhcccccc-cccCcHH---HHHHHHHHHHHHHc-cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHH
Confidence 4321 111000 0110111 11112221111111 1223333333333334432334566678889999988875445
Q ss_pred hhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhc
Q 013085 316 RQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 358 (449)
Q Consensus 316 ~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k 358 (449)
...++.+...|...+..+ +...-+..++++.+++..
T Consensus 406 ~~~l~~il~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 406 TYYVHQALPSILNLMNDQ-------SLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHH
Confidence 667788888888877432 223334445555555543
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.38 E-value=0.013 Score=59.60 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=98.8
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCc-cc-----hHHHHHHhhhhhcccc-hhHHHHHhhccccccccCcc
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP-DL-----SSRAVDAHLDLIEEEE-LGVRVQAIRGLPLFCKDTPE 101 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP-~L-----~e~Ai~a~lDLcEDed-~~IR~qAik~Lp~lck~~~e 101 (449)
..+....++.... +++..+.-|++.+.+.....+ .. ...++..++.+..+.+ +.||.+|...|-.+|.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3455777888776 778889999999999977665 22 2357888999999887 99999999999999999888
Q ss_pred chhh-----HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 102 ~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
+... ....|.++|.++++.-+..+-.+|..+...++. +.+..++..+.. +.+..+|..+...|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----HTKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----TCCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 7654 556789999988877777777777777654443 345666665531 34556776666555
Q ss_pred h
Q 013085 169 R 169 (449)
Q Consensus 169 ~ 169 (449)
.
T Consensus 228 ~ 228 (528)
T 4b8j_A 228 S 228 (528)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.38 E-value=0.029 Score=54.79 Aligned_cols=304 Identities=10% Similarity=0.087 Sum_probs=154.2
Q ss_pred HHHHcc-CCHHHHHHHhhhhhHhhcc-Ccc-chHHHHHHhhhhhccc--chhHHHHHhhccccccccC-----ccchhhH
Q 013085 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (449)
Q Consensus 37 Il~~~k-g~~k~K~LaAqfI~kffk~-FP~-L~e~Ai~a~lDLcEDe--d~~IR~qAik~Lp~lck~~-----~e~v~ki 106 (449)
++.+.. .+++. +-+++.|....++ ||+ --.+.+..++..+.++ |..+|..|+..|-.+|++. ..+++.+
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHH
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHH
Confidence 455544 55566 6788888887776 563 4567888899999998 9999999999999999864 3456677
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHcc-----chh---h-HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccc
Q 013085 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQ-----DVK---A-SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (449)
Q Consensus 107 aDVL~QLLqtd--d~~E~~~V~~sL~~ll~~-----d~k---~-tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l 175 (449)
...|.++|+.+ ++.-+..+-+++.+++.. ++. . .+..+...+. +.++.+|..++..+..-....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHH
Confidence 77888888776 344455555666654322 111 1 1333433222 556788987776665322222
Q ss_pred hhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcccc-------CC----------CCc----hhHHHHHHHH
Q 013085 176 KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF-------GE----------KAP----TERMKELIGI 234 (449)
Q Consensus 176 ~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~-------~~----------~~p----~~~~qeLv~~ 234 (449)
+. .+.+ -+...++..+-..++|...+=....++++..+.-. .. ... ..-..+++..
T Consensus 249 ~~-~~~~--~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 249 YQ-YMET--YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp GG-GCTT--TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HH-HHHH--HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 21 1110 00001222222333332211111222332222110 00 000 0002445555
Q ss_pred HHhhh-cccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChh
Q 013085 235 IEGQA-DLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQ 313 (449)
Q Consensus 235 i~eqa-~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~ 313 (449)
+.... +.|.+.+. |.-.+. .+.-.++..++...+ ...+..+...+...+++=....|-..+..+..++..|+..
T Consensus 326 l~~~l~~~d~d~~~-~~~~~r---~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 326 LTQTLTKQDENDDD-DDWNPC---KAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHTTCCCSSCCT-TCCSHH---HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHhccccccc-ccchHH---HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 54432 11111111 111111 122222222222222 2444555555544555433456778899999998877643
Q ss_pred hHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 314 DSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 314 da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
.-...++.++..|...+-.+ +..+-..-..++.+++...++
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~-------~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDP-------SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhccc
Confidence 33345566777777776321 234455666666777666554
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.37 E-value=0.0045 Score=56.31 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=103.7
Q ss_pred ccCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccc-----hHHHHHHhhhhhcccchhHHHHHhhccccccccCcc
Q 013085 28 SQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (449)
Q Consensus 28 ~~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e 101 (449)
+.....|..+....+ +++.+++-|++.+.++....++- ...++..++.+..+.+..||..|...|-.+|.++++
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 356667888888777 77889999999998877763332 234778999999999999999999999999998877
Q ss_pred chhh-----HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 102 ~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
+... ....|.++|+++++.-+..+-.+|..+...++. +.+..+..-+. +++..+|+.++.-|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L 162 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 7554 466889999998877777777777777655443 35566666655 55677888887766
Q ss_pred h
Q 013085 169 R 169 (449)
Q Consensus 169 ~ 169 (449)
.
T Consensus 163 ~ 163 (252)
T 4db8_A 163 S 163 (252)
T ss_dssp H
T ss_pred H
Confidence 5
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.36 E-value=0.0019 Score=57.35 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=99.7
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchhh-
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k- 105 (449)
....++...+ +++.++.-|+..+......-|+.... ++..++.+..+.|..||..|...|-.+|.+++++...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556677666 78899999999999988777765443 6789999999999999999999999999988877543
Q ss_pred ----HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 106 ----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
....|+++|+++++.-...+-.+|..+...++. |.+..+..-+. ++++.+|+.+...|.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-----HENEKIQKEAQEALE 205 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 567899999988877777777778777765443 33444444433 456677777777664
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.34 E-value=0.021 Score=55.76 Aligned_cols=296 Identities=10% Similarity=0.058 Sum_probs=154.2
Q ss_pred HHHHccCCHHHHHHHhhhhhHhhccC------------ccchH----HHHHHhhhhhcccchhHHHHHhhccccccccC-
Q 013085 37 IIEAAKTSLKAKQLAAQLIPRFFKFF------------PDLSS----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT- 99 (449)
Q Consensus 37 Il~~~kg~~k~K~LaAqfI~kffk~F------------P~L~e----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~- 99 (449)
|+.....+..++++|+..+.++.+.. +.+.+ .--+.++.++.+++..| .++...|..+++..
T Consensus 43 il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~ 121 (462)
T 1ibr_B 43 VLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEI 121 (462)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHG
T ss_pred HHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhc
Confidence 44432246899999999999987542 33333 33355778888888888 88877777777652
Q ss_pred cc-chhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHHccc-hh------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 100 PE-YLSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQD-VK------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 100 ~e-~v~kiaDVL~QLLqtd--d~~E~~~V~~sL~~ll~~d-~k------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|+ ..+.+...|.+.++++ ++.-+..+=.+|..+.+-- +. ..+-..+.+....+ .....+|..+++-+.
T Consensus 122 ~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~ 199 (462)
T 1ibr_B 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALL 199 (462)
T ss_dssp GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Confidence 32 3467888889999887 7766666666777666421 21 12323333444211 114679998887665
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcc-----ccCCCCchhHHH-HHHHHHHhhhcccC
Q 013085 170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLS-----LFGEKAPTERMK-ELIGIIEGQADLDA 243 (449)
Q Consensus 170 ~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~-----~~~~~~p~~~~q-eLv~~i~eqa~Ld~ 243 (449)
.-+.-++... . ......++...+...+.+....-....+..|..+- .+.. . .. .++.++....
T Consensus 200 ~~~~~~~~~~-~-~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~-~~~~l~~~~~~~~---- 268 (462)
T 1ibr_B 200 NSLEFTKANF-D-KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET----Y-MGPALFAITIEAM---- 268 (462)
T ss_dssp HHTTTTHHHH-T-SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT----T-TTTTHHHHHHHHH----
T ss_pred HHHHHHHHhh-h-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHH----
Confidence 4322222111 1 11234555666666655543332222333332221 1111 0 12 4555544321
Q ss_pred CCCCCChhhHHHHHHHHHHhhh------hhccC---------CChhhHHHHHHHhhccC----CCCCC-----h--hhhH
Q 013085 244 QFNVSDADHIDRLISCLYMALP------FFLRG---------ASGSKFLNYLNKHIIPV----FDKLP-----E--ERKL 297 (449)
Q Consensus 244 ~f~~sD~d~vdrli~Cl~~AlP------~fS~~---------v~Stkfv~y~~~~VlP~----l~~L~-----e--~~kL 297 (449)
...+++.....+.++..... .+... .....++..+...++|. +.+.+ + ..|.
T Consensus 269 --~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 269 --KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp --HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred --cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 11223322222222211111 01110 12223444334555553 33221 1 2244
Q ss_pred HHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcC
Q 013085 298 DLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKA 359 (449)
Q Consensus 298 ~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~ 359 (449)
.-...|..++..+| ...++.+.+.+..++- +-+|.+-++.++++..++..+
T Consensus 347 ~a~~~L~~l~~~~~----~~~~~~~~~~l~~~l~-------~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 347 AAGVCLMLLATCCE----DDIVPHVLPFIKEHIK-------NPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHHHHHHTT----TTHHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHhcCC
Confidence 44444445444455 2566777777777773 237999999999999999744
No 23
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.28 E-value=0.018 Score=61.35 Aligned_cols=297 Identities=7% Similarity=0.027 Sum_probs=151.3
Q ss_pred CHHHHHHHhhhhhHhhccCccc------hHHHHHHhhhhhcccchhHHHHHhhccccccccCccchh-----hHHHHHHH
Q 013085 44 SLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQ 112 (449)
Q Consensus 44 ~~k~K~LaAqfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~-----kiaDVL~Q 112 (449)
++.++..|.+-+..+...+++- .+..+..+..++.|++..+|..|++.|-.++...++++. .+...+..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 273 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999998888865544421 134677888889999999999999999999987776543 45555555
Q ss_pred HHhcchhHHHHHHHHHHHHHHccch------------------------hhHHHHHHHhhccCCCCCCh--HHHHHHHHH
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDV------------------------KASLTALFKHIGSVDEPSTD--EFIREKVLS 166 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~------------------------k~tL~~lf~qI~~~~~~~~e--e~~Re~~l~ 166 (449)
.++.+++.-+..+-..+.++.+.-+ ...+..++..+...++..+| -.+|..+..
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 5655554444444444444443310 12234444444422211112 257876666
Q ss_pred HHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchh---HHHHHHHHHHhhhcccC
Q 013085 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTE---RMKELIGIIEGQADLDA 243 (449)
Q Consensus 167 Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~---~~qeLv~~i~eqa~Ld~ 243 (449)
.|..=...++..+ -..+...+...+++-.....+.-...|.++-.. ..|.. -..+++..+... +.
T Consensus 354 ~L~~l~~~~~~~~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~--~~~~~~~~~l~~il~~l~~~--l~- 421 (861)
T 2bpt_A 354 CLQLFAQNCGNHI-------LEPVLEFVEQNITADNWRNREAAVMAFGSIMDG--PDKVQRTYYVHQALPSILNL--MN- 421 (861)
T ss_dssp HHHHHHHHHGGGG-------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS--SCHHHHHHHHHHHHHHHHHG--GG-
T ss_pred HHHHHHHHccHhH-------HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH--cC-
Confidence 5542211222222 234455555555554433333334444444321 11111 012333433332 21
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCC---hhhHhhhhH
Q 013085 244 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT---PQDSRQILP 320 (449)
Q Consensus 244 ~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~---~~da~~~l~ 320 (449)
..++..-...+.|+.+...++.......+++.-+...++..+++ +...+......+..++..|+ .......++
T Consensus 422 ---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~ 497 (861)
T 2bpt_A 422 ---DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYP 497 (861)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 12333333344444444444433322344455444445544444 23455555555555554444 233456778
Q ss_pred HHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 321 SVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 321 ~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
.|++.|...+-.+. .+...-+..+-++..++...|+
T Consensus 498 ~il~~L~~~l~~~d-----~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 498 ALVDGLIGAANRID-----NEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHHTCSC-----CGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCcC-----cchHHHHHHHHHHHHHHHHcch
Confidence 88888887774322 2233444455555555555554
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.27 E-value=0.0084 Score=61.11 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=97.6
Q ss_pred HHHHHHHcc-CC-HHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchhhH
Q 013085 34 YEGIIEAAK-TS-LKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI 106 (449)
Q Consensus 34 y~~Il~~~k-g~-~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki 106 (449)
...++...+ ++ +.++.-|+..+.+....-|+.... ++..++.+..+.+..||.+|+..|..+|.+++++...+
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 445555555 44 788999999998888876765543 88899999999999999999999999999887754444
Q ss_pred -----HHHHHHHH-hcchhHHHHHHHHHHHHHHccch-------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 107 -----VDILVQLL-AAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 107 -----aDVL~QLL-qtdd~~E~~~V~~sL~~ll~~d~-------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
...|.++| .+.++.-+..+-.+|..+....| .+.+..|..-+. ++++.+|..++.-|.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-----SNDEEVLTDACWALS 269 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHH
Confidence 44677888 45666667777788888877643 345666666554 567788888777665
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.17 E-value=0.0056 Score=60.04 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=103.0
Q ss_pred hHHHHHH-Hcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcc-cchhHHHHHhhccccccccCccchh
Q 013085 33 DYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 33 ~y~~Il~-~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcED-ed~~IR~qAik~Lp~lck~~~e~v~ 104 (449)
....++. ..+ +++.+|.-|+..|..-...-|..++. |+..++.|... .+..||+.|+..|..+|++++....
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3455666 555 88999999999999999999988764 66788999985 4889999999999999999887554
Q ss_pred hHHH-----HHHHHHhcchhHHHHHHHHHHHHHHccch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 105 KIVD-----ILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 105 kiaD-----VL~QLLqtdd~~E~~~V~~sL~~ll~~d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
.+.+ +|+++|++.++.-...+-++|..+...++ .|.+..|+..+. +.+..+|+.++.-|..
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-----~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-----TEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-----SCCSTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-----CCChhHHHHHHHHHHH
Confidence 4444 89999998887777677777777776544 245666776665 4566789888887764
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.13 E-value=0.022 Score=50.39 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=93.7
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
-+...+..+|...+ +++.++.-|+..+.++-. ..++..++.+..|+|..||..|++.|..++. +...
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~ 78 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 78 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 56788899999888 889999999999988653 4788999999999999999999999998863 2466
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 108 DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+.|.++|+.+++..+..+-.+|.. +.....+..+...+. +.+..+|..++.-|.
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~---~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQ---IGDERAVEPLIKALK-----DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHH---HCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH---hCcHHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 788899988887766655555544 444556666666554 556789988887664
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.12 E-value=0.039 Score=58.85 Aligned_cols=297 Identities=10% Similarity=0.007 Sum_probs=145.7
Q ss_pred CHHHHHHHhhhhhHhhccCccc-h-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccch----h-hHHHHHHH
Q 013085 44 SLKAKQLAAQLIPRFFKFFPDL-S-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----S-KIVDILVQ 112 (449)
Q Consensus 44 ~~k~K~LaAqfI~kffk~FP~L-~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v----~-kiaDVL~Q 112 (449)
+..++..|.+-+......+++- . +..+..+..++.|+|..||.+|++.|..++...++++ . .+.+.+.+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788888988888876665532 1 2357777888899999999999999999998777553 3 56666666
Q ss_pred HHhcchhHHHHHHHHHHHHHHccch----------------------------hhHHHHHHHhhccCCCC--CChHHHHH
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDV----------------------------KASLTALFKHIGSVDEP--STDEFIRE 162 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~----------------------------k~tL~~lf~qI~~~~~~--~~ee~~Re 162 (449)
.++.+++.-+..+-+.+.++.+..+ ...+..++..+...++. +++..+|.
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHH
Confidence 6655544333333333333332210 11223344444322111 11224777
Q ss_pred HHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCch---hHHHHHHHHHHhhh
Q 013085 163 KVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIEGQA 239 (449)
Q Consensus 163 ~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~---~~~qeLv~~i~eqa 239 (449)
-+...+..=....+.. +-..++..+...+.|-........+..|..+-.. -.|. ....+++..+...
T Consensus 347 ~a~~~l~~l~~~~~~~-------~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~--~~~~~~~~~~~~~l~~l~~~- 416 (876)
T 1qgr_A 347 AAGVCLMLLATCCEDD-------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG--PEPSQLKPLVIQAMPTLIEL- 416 (876)
T ss_dssp HHHHHHHHHHHHHGGG-------GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS--SCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCcHh-------hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH-
Confidence 6655554221112212 2234455555566554333333333344443221 1111 1123344444432
Q ss_pred cccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCC--------
Q 013085 240 DLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-------- 311 (449)
Q Consensus 240 ~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~-------- 311 (449)
| +..++..-.+...++.+....+.......+++.-+...++..+++ +...|...++.+..++..++
T Consensus 417 -l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 417 -M----KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp -H----TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred -h----CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 2 112222222333333333222222221234555555555555555 34556666666555544332
Q ss_pred -----hhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhh
Q 013085 312 -----PQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLA 356 (449)
Q Consensus 312 -----~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~ 356 (449)
.......++.|...|...+-.+..+...+.-..+||+-......|
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 112345677788888887765433223344445555544443333
No 28
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.11 E-value=0.0041 Score=60.54 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=89.6
Q ss_pred hHHHHHHHHHhhhhhhccccccCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHH
Q 013085 8 AKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (449)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (449)
++-++.|.+..+.+-+ +|.+--.+-|.+|+.-.. .+...|+..++||..=|+.-|++...+++++..|++|+|+.|-+
T Consensus 30 ~~kl~~L~qa~el~~~-~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 30 STKCELLAKVQETVLG-SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHc-cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 5668888888773322 233445566777777544 66788888888888888888888888888888888888888888
Q ss_pred HHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHH
Q 013085 87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 87 qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~ 166 (449)
.||-..-.+-+- +|-.+.++....+...-.+..++-+| + .+++.+. ++.+.+|-.++|
T Consensus 109 ~~I~~~~~iY~~----------~l~~i~~~~~~~~~~~~~W~~m~~lK----~---~Il~~~~-----s~n~gvkl~~iK 166 (257)
T 3gs3_A 109 RVIQACGSIYKN----------GLQYLCSLMEPGDSAEQAWNILSLIK----A---QILDMID-----NENDGIRTNAIK 166 (257)
T ss_dssp HHHHHHHHHHHH----------HHHHHTTSSSCCHHHHHHHHHHHHHH----H---HHHHGGG-----SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHhcCCCCcchHHHHHHHHHHHH----H---HHHHHHc-----cCCcchHHHHHH
Confidence 888776666442 23333344333332233344444443 2 2333333 455778888888
Q ss_pred HHh
Q 013085 167 FIR 169 (449)
Q Consensus 167 Fl~ 169 (449)
|+.
T Consensus 167 F~e 169 (257)
T 3gs3_A 167 FLE 169 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.11 E-value=0.015 Score=52.78 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=101.7
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchh--
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-- 104 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~-- 104 (449)
....++...+ +++.++.-|+..+...-...|+.... ++..++.+..+++..||.+|+..|..+|.+.+..+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 3455666666 77899999999999998888876655 788999999999999999999999999998754322
Q ss_pred ---hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 105 ---KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 105 ---kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.+...|.++|+++++.-...+-.+|..+...++. +.+..+..-+. ++++.+|+.++..|.
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALS 205 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG-----CSSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC-----CCCHHHHHHHHHHHH
Confidence 3567899999988877777777777777765432 34556665554 456788888888776
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.10 E-value=0.024 Score=57.93 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=99.1
Q ss_pred hHHHHHHHcc-C-CHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccchh-
Q 013085 33 DYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS- 104 (449)
Q Consensus 33 ~y~~Il~~~k-g-~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~- 104 (449)
....++...+ + ++.++..|+..+......-|+... .++..++.+..+.+..||.+|+..|..+|.+++++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 3455566555 4 678888899998888887666543 4578899999999999999999999999998766533
Q ss_pred ----hHHHHHHHHHhcchhHHHHHHHHHHHHHHccc-h-------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 105 ----KIVDILVQLLAAEEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 105 ----kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d-~-------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.+...|.++|++.++.-+..+-++|..+...+ | .+.+..|..-+. ++++.+|..++.-|.
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----SMDTETLVDACWAIS 282 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 35678889998877666777788888888654 3 256677776665 556788887776665
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.97 E-value=0.016 Score=53.97 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=66.5
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~ 122 (449)
+++.++.-|+.-+.+.....|.....++..+..+..|+|+.||..|+..|..+... ...+.|.++|+.+++.-+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr 176 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVR 176 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHHH
Confidence 55666666666666666666666666677777767777777777777776666431 244556666666665555
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 123 DAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 123 ~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+-.+|..+ ..+....+..+...+. +++..+|..++.-|.
T Consensus 177 ~~a~~aL~~~-~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 177 NWAAFAININ-KYDNSDIRDCFVEMLQ-----DKNEEVRIEAIIGLS 217 (280)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-ccCcHHHHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 5555555433 2233445555555443 344566666665553
No 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.97 E-value=0.041 Score=48.95 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=93.1
Q ss_pred cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 29 ~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
.+.+....++...+ +++.++..|+..+.++-. ..++..++.+..|+|..||..|++.|..+.. +...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 56777888888877 889999999999988643 5789999999999999999999999999863 3456
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 108 DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+.|.++|+.+++.-+..+-.+|.. +.....+..+..-+. +.+..+|..++.-|.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~---~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQ---IGDERAVEPLIKALK-----DEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHH---HCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH---hCcHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 788899988887665555555544 444556666666554 566789988887765
No 33
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.87 E-value=0.031 Score=51.46 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=105.4
Q ss_pred CCHHHHHHHhhhhhHhhccCccc----hHHHHHHhhhhhc-ccchhHHHHHhhccccccccCc----cchhhHHHHHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTP----EYLSKIVDILVQL 113 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L----~e~Ai~a~lDLcE-Ded~~IR~qAik~Lp~lck~~~----e~v~kiaDVL~QL 113 (449)
.+-++++-|+.-|.+..+.-|.+ -.+.++++..+.. |.+..||..|.+.|..+|+.-. .|+..+...|...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56777777777777766653332 2477889999995 9999999999999999997533 3566677777777
Q ss_pred HhcchhHHHHHHHHHHHHHHccch-hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHH
Q 013085 114 LAAEEIVERDAVHKALMSLLRQDV-KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITD 192 (449)
Q Consensus 114 Lqtdd~~E~~~V~~sL~~ll~~d~-k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~ 192 (449)
|....+..+..+..+|.+++..-+ ..-+..++..+. +....+|+.++.||..-+....++.. ....+. .++.
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~-~~~~l~-~l~p 179 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-----NKNPSVKSETALFIARALTRTQPTAL-NKKLLK-LLTT 179 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTCCGGGC-CHHHHH-HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHcCCCCc-cHHHHH-HHHH
Confidence 776677788999999999987543 333455555443 44568999999999876655533321 122333 4556
Q ss_pred HHHhhccccch
Q 013085 193 LIKKSLEDVTG 203 (449)
Q Consensus 193 ~ikK~L~dVt~ 203 (449)
.+.+.|.|-..
T Consensus 180 ~l~~~l~D~~~ 190 (242)
T 2qk2_A 180 SLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHTSSCH
T ss_pred HHHHHhcCCCh
Confidence 66667766444
No 34
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.82 E-value=0.16 Score=57.47 Aligned_cols=295 Identities=15% Similarity=0.158 Sum_probs=165.7
Q ss_pred CCHHHHHHHhhhhhHhhccCccch----HHHHHHhhhhhcccchhHHHHHhhccccccccC-------------------
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLS----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT------------------- 99 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~------------------- 99 (449)
.+.++|+-|+..+..+...+|+.- +..+..+++...|.+..||..|++.++.+++..
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 456789999999999988887532 334556677778999999999999999888632
Q ss_pred ----ccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh-------hHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 100 ----PEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 100 ----~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k-------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
..+++.+...+.+.|+.+++..+..+-.+|..+....+. .-+..++..+. .+.....+|..++.++
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~---d~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN---DKSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT---CSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHc---CCCCcchHHHHHHHHH
Confidence 246788888888999988888777777777777765432 22234444433 1222347898888888
Q ss_pred hhhcccchhhhcCChHHHHHHHHHHHHhhccccchH---H-HHHHHHHHHhccccC----CCCchhHHHHHHHHHHhhhc
Q 013085 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGA---E-FRMFMDFLKSLSLFG----EKAPTERMKELIGIIEGQAD 240 (449)
Q Consensus 169 ~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~---E-F~l~m~lL~~l~~~~----~~~p~~~~qeLv~~i~eqa~ 240 (449)
..-+...+++.+. +-+ ..++..+-+.++|-... + ...+-++.+.+.... ..-.++ .+.++..+...
T Consensus 502 ~~~~~~~~~~~~~--~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~-- 575 (1230)
T 1u6g_C 502 YVILCNHSPQVFH--PHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY-IKDLFTCTIKR-- 575 (1230)
T ss_dssp HHHHHSSCGGGGH--HHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH-HHHHHHHHHHH--
T ss_pred HHHHHhCCHHHHH--hHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH-HHHHHHHHHHH--
Confidence 7655444444221 011 12233333344443220 1 112233333332100 011122 35666665554
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhH
Q 013085 241 LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILP 320 (449)
Q Consensus 241 Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~ 320 (449)
|.. ...|++.-...+.|+......+.... .+++.-+...+.+.+. .+..|...++.+.+++...+..+....++
T Consensus 576 l~~--~d~~~~vr~~a~~~lg~L~~~~g~~~--~~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~ 649 (1230)
T 1u6g_C 576 LKA--ADIDQEVKERAISCMGQIICNLGDNL--GSDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLG 649 (1230)
T ss_dssp HSC--SSSCHHHHHHHHHHHHHHHHHTGGGC--CTHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHH
T ss_pred Hhc--cCCCHHHHHHHHHHHHHHHHHhCchh--hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHH
Confidence 211 12344545566667766554443222 2333333333333222 23467788889988887555445566777
Q ss_pred HHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhh
Q 013085 321 SVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHL 355 (449)
Q Consensus 321 ~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L 355 (449)
.|...|...+-.. +....++.++|+--.....
T Consensus 650 ~i~~~L~~~l~~~---~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 650 EGVPILASFLRKN---QRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHTTSC---CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcc
Confidence 7888887776321 2234455555554444433
No 35
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.75 E-value=0.014 Score=51.71 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=96.7
Q ss_pred HHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHH
Q 013085 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (449)
Q Consensus 31 ~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDV 109 (449)
.+....++...+ +++.+++-|+..+.++-. .+++..+..+..|+|+.||..|++.|-.+.. +...+.
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~ 111 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 111 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 355666777666 788899999988888742 4688889999999999999999999988854 235667
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhh----c-ccchhhhcCChH
Q 013085 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK----V-FPLKAELLKPQE 184 (449)
Q Consensus 110 L~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~k----l-~~l~~e~l~~~~ 184 (449)
|.++|..+++..+..+-.+|-.+ .....+..+...+. +.+..+|..++.-|..- . ..|..-+-.+..
T Consensus 112 L~~~l~d~~~~vr~~a~~aL~~~---~~~~~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~ 183 (201)
T 3ltj_A 112 LIKALKDEDWFVRIAAAFALGEI---GDERAVEPLIKALK-----DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTG 183 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH---TCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCH
Confidence 88888877776666655555554 34456666665554 45667888777665431 1 112222222444
Q ss_pred HHHHHHHHHHHh
Q 013085 185 EMERHITDLIKK 196 (449)
Q Consensus 185 E~E~~i~~~ikK 196 (449)
++.......+.+
T Consensus 184 ~vr~~A~~aL~~ 195 (201)
T 3ltj_A 184 FARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.73 E-value=0.014 Score=52.02 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=84.6
Q ss_pred HHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHH
Q 013085 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (449)
Q Consensus 31 ~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDV 109 (449)
.+....++...+ +++.++..|+.-+.++-. ..++..+..+..|+|+.||..|+..|..+.. +...+.
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~ 116 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 116 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 455666777666 778888888888888742 4678888888899999999999999988854 235567
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 110 L~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|.++|..+++..+..+-.+|-.+ .....+..+...+. +.++.+|..++.-|.
T Consensus 117 L~~~l~d~~~~vr~~a~~aL~~~---~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 117 LIKALKDEDWFVRIAAAFALGEI---GDERAVEPLIKALK-----DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH---CCGGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 88888877776666655555554 34455666665543 455678877766554
No 37
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.48 E-value=0.035 Score=62.75 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=87.6
Q ss_pred HHHHHHcc-CCHHHHHHHhhhhhHhhccCccc----------hHHHHHHhhhhhcc-cchhHHHHHhhccccccccCcc-
Q 013085 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL----------SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPE- 101 (449)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L----------~e~Ai~a~lDLcED-ed~~IR~qAik~Lp~lck~~~e- 101 (449)
..++.+.. .++.++.-|++-+..+....+.- ..+.+..+++...| ++..+|..|+..|-.+|...++
T Consensus 89 ~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~ 168 (1230)
T 1u6g_C 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 168 (1230)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH
Confidence 34555544 66777777888888888888753 67888889999985 8889999999999999965443
Q ss_pred ---chhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh----HHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 102 ---YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA----SLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 102 ---~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~----tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|++.+...|.++|+.+++.-+..+-.+|..+...-+.. .+..+...+... .+..+|..++..+.
T Consensus 169 l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~----~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 169 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN----DSMSTTRTYIQCIA 239 (1230)
T ss_dssp CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT----CSSCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----CchhHHHHHHHHHH
Confidence 56778888888888877777777777777777654432 234444444421 11235555554444
No 38
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.37 E-value=0.032 Score=57.30 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhhhhhhccccccCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHH
Q 013085 8 AKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (449)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (449)
+.-|+.|-+..+.+-. +|.+--.+-|..||.... .+..+++..++||..=|+.-+++...+++++..|++|+|+.|-+
T Consensus 40 ~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3456767777664322 344455666777777555 67777888888888888888888888888888888888888777
Q ss_pred HHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHH
Q 013085 87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 87 qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~ 166 (449)
.+|...-.+-+ + +|-.+.++....+...-.+.-++-+| + .+++.+. ++.+.+|-.++|
T Consensus 119 ~~I~~~tslYp--------l--~f~~i~~~~~~~~~~e~~W~~m~~lK----~---~Il~~~d-----s~n~GVrl~aiK 176 (386)
T 3o2t_A 119 KAILTMTQLYK--------V--ALQWMVKSRVISELQEACWDMVSAMA----G---DIILLLD-----SDNDGIRTHAIK 176 (386)
T ss_dssp HHHHHHHHHHH--------H--HHHHHHHC-CCCHHHHHHHHHHHHHH----H---HHHHGGG-----CSSHHHHHHHHH
T ss_pred HHHHHHHHHHH--------H--HHHHHhcCCCcchhHHHHHHHHHHHH----H---HHHHHhc-----cCCcchHHHHHH
Confidence 77776655532 1 12222333332222222233334443 2 2333332 456779999999
Q ss_pred HHhh
Q 013085 167 FIRD 170 (449)
Q Consensus 167 Fl~~ 170 (449)
|+..
T Consensus 177 Fle~ 180 (386)
T 3o2t_A 177 FVEG 180 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.28 E-value=0.16 Score=55.43 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=83.4
Q ss_pred HHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccc-----hhhHHHH
Q 013085 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDI 109 (449)
Q Consensus 36 ~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-----v~kiaDV 109 (449)
.++...+ ++...++-++++|.+- .-+.+...++..+..|..++|+.||..|+..|-.+|++...- .+.+...
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 4444434 6777788888888632 235777899999999999999999999999999999864211 1246667
Q ss_pred HHHHHhcc-hhHHHHHHHHHHHHHHccc-------hhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 110 LVQLLAAE-EIVERDAVHKALMSLLRQD-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 110 L~QLLqtd-d~~E~~~V~~sL~~ll~~d-------~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
|+++|.++ ++..+..+-.+|..+-..+ -.|.+..|..-+. ++++.+|..++.-|.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~-----~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG-----SPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 78888755 5555555556666543221 1245566666655 456778887776665
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.18 E-value=0.077 Score=49.27 Aligned_cols=123 Identities=9% Similarity=-0.007 Sum_probs=87.1
Q ss_pred HHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH-
Q 013085 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ- 112 (449)
Q Consensus 35 ~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q- 112 (449)
..++...+ +++.++.-|+.-+.+.- ...++..++.++.|+|..||..|+..|..+... ++.+..+..+|.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccchHHHHHHHHH
Confidence 44555555 67888888888888775 467999999999999999999999999998643 3456666666764
Q ss_pred HHhcchhHHHHHHHHHHHHHHccch---hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDV---KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~---k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+++.+++..+..+-.+|..+-..+| ...+..+...+. +.+..+|..++.-|.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 4566666667777777777654432 334444544443 556678888877664
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.91 E-value=1.1 Score=47.69 Aligned_cols=276 Identities=10% Similarity=0.074 Sum_probs=157.7
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q 112 (449)
|-.++.... .+...||++--.+..|++.-|++.--++|++..=+.|.++.||--|++.|..++ +|+++.-+..-+.+
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAEAFAGEIPK 153 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHHH
Confidence 555666555 778999999999999999999999999999987777999999999999999995 57899989999999
Q ss_pred HH--hcchhHHHHHHHHHHHHHHccchhhH-----HHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHH
Q 013085 113 LL--AAEEIVERDAVHKALMSLLRQDVKAS-----LTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEE 185 (449)
Q Consensus 113 LL--qtdd~~E~~~V~~sL~~ll~~d~k~t-----L~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E 185 (449)
+| ...+|--+..+=-++..+++.+|... +..+..-+. ..+..|+.-++..+.+-...=+..+. .
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-----d~d~~V~~~a~~~l~~i~~~~~~~~~----~ 224 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-----DQHLGVVTAATSLITTLAQKNPEEFK----T 224 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-----CSCHHHHHHHHHHHHHHHHHCHHHHT----T
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC-----CCCccHHHHHHHHHHHHHHhChHHHH----H
Confidence 99 66677777666677777888777532 222222221 33446777777766542111111110 0
Q ss_pred HHHHHHHHHHhhcc--ccc---------hHHHHHHHHHHHhccccCCCC-chhHHHHHHHHHHhhhc-ccCCCCCCChhh
Q 013085 186 MERHITDLIKKSLE--DVT---------GAEFRMFMDFLKSLSLFGEKA-PTERMKELIGIIEGQAD-LDAQFNVSDADH 252 (449)
Q Consensus 186 ~E~~i~~~ikK~L~--dVt---------~~EF~l~m~lL~~l~~~~~~~-p~~~~qeLv~~i~eqa~-Ld~~f~~sD~d~ 252 (449)
.-..+...+++.+. +.+ ..++-. ..+|+.+..|.... |.. ...+.+++..-.. ++....+....+
T Consensus 225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q-i~il~ll~~~~~~~d~~~-~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS-VKLLRLLQCYPPPEDPAV-RGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH-HHHHHHGGGSSSCSSHHH-HHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH-HHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHhhccCcccccccc
Confidence 11123333444432 121 134422 33455555554322 222 2334443333211 000000000111
Q ss_pred H----HHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhh-HhhhhHHHHHHH
Q 013085 253 I----DRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD-SRQILPSVAVLL 326 (449)
Q Consensus 253 v----drli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~d-a~~~l~~i~~~L 326 (449)
- .=+.+|++..+-+ . ++..++.-..+.+...+..=+...|.=.|..+..++...+..+ .......++..|
T Consensus 303 ~n~~~aVl~ea~~~i~~l-~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHH-D---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp HHHHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhc-C---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 1 2234455444322 1 3445555555555555544345778888888888876543222 344444444444
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.84 E-value=2 Score=44.12 Aligned_cols=117 Identities=14% Similarity=0.216 Sum_probs=85.6
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhcc--Cccch----HHHHHHhhhhhc-ccchhHHHHHhhccccccccCccchh
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF--FPDLS----SRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~--FP~L~----e~Ai~a~lDLcE-Ded~~IR~qAik~Lp~lck~~~e~v~ 104 (449)
..+.|+.+.+ ++...+.-|.+-+.|.-.. -|-.+ .-++-.++.|.. ++++.|+..|...|-.+|.+++++..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3788999999 6666666777877777532 33221 125667888775 55588999999999999999999987
Q ss_pred hHH-----HHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhc
Q 013085 105 KIV-----DILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (449)
Q Consensus 105 kia-----DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~ 149 (449)
.|+ ..|+++|+++++.-...+-++|..+..-+|. |.+..+...+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 665 4799999999888888888888877654443 34555665554
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.73 E-value=2.3 Score=44.63 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=85.9
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI 106 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki 106 (449)
....++...+ +++.+++.|+..+.......+... ..++..++++..+.+..+|..|...|..+|.++++....+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445555555 678889999999888877765543 4678889999999988889888889999998776664433
Q ss_pred -----HHHHHHHHhcchhHHH-HHHHHHHHHHHccch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 107 -----VDILVQLLAAEEIVER-DAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 107 -----aDVL~QLLqtdd~~E~-~~V~~sL~~ll~~d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
...|+++|++.+...+ ..+-.+|..+- .++ .|.+..+...+. .++..+|+.++.-|.
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~-----~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLT-----DPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTT-----CSCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 5688899987654332 22222322221 111 244556665554 445677777766554
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.61 E-value=0.46 Score=50.37 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=78.5
Q ss_pred HHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHH
Q 013085 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (449)
Q Consensus 47 ~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~ 126 (449)
+..=|+..|-.. ..-|.+...|++.+..++++.|+.||..|+..|-.++..+|+.+.+.-+.+..+|..+|..-+...-
T Consensus 293 V~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 293 ILYETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 333444444442 3335666789999999999999999999999999999988888888777778888766655444433
Q ss_pred HHHHHHHccc-hhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 127 KALMSLLRQD-VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 127 ~sL~~ll~~d-~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..|..+...+ ...-+.-+..++. ..++++|..++..|.
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~-----~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLD-----SCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH
Confidence 4444444332 2233455555555 345678877776665
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.54 E-value=1.7 Score=43.37 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=87.0
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH-
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI- 106 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki- 106 (449)
-..++...+ +++.++..|+..+.....+.++.. ..++..++++..+++..+|..+...|-.+|.++++....+
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~ 182 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334555555 678889999999988887766643 4678889999999999999999999999998877664443
Q ss_pred ----HHHHHHHHhcchhHHHH-HHHHHHHHHHccch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 107 ----VDILVQLLAAEEIVERD-AVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 107 ----aDVL~QLLqtdd~~E~~-~V~~sL~~ll~~d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
...|+++|.+.++..+. .+-.+|..+- .+| .|.+..+...+. .++..+|+.++..|.
T Consensus 183 ~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~-----~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLT-----DPSQRLVQNCLWTLR 252 (529)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTT-----SSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHh-----CCChHHHHHHHHHHH
Confidence 45788889876654432 2223332222 222 245555665554 345677777766655
No 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.48 E-value=0.025 Score=47.48 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q 112 (449)
...++...+ .++.++..|+.-+.++- +.++..++.+..|+|+.||..|++.|-.+.. +...+.|..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~-------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~ 80 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMG-------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIK 80 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCS-------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC-------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHH
Confidence 344455555 56666777776666543 2246788888888888889998888888863 345667778
Q ss_pred HHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 113 LLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 113 LLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+|..+++..+..+-.+|..+ .....+..|...+. ..+..+|..++.-|.
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~---~~~~a~~~L~~~l~-----d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQI---GGERVRAAMEKLAE-----TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHH---CSHHHHHHHHHHTT-----SCCTHHHHHHHHHGG
T ss_pred HHcCCCHHHHHHHHHHHHHh---CcHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 88777766666655555544 34455666665554 455678887776553
No 47
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.46 E-value=0.07 Score=44.72 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=54.9
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~Q 112 (449)
...++...+ .++.++..|+.-+.++- ...++..+..+.+|+|..||..|+..|..+.. ++..+.|.+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~ 111 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEK 111 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHH
Confidence 456666655 66777777777777653 26777777777778888888888887777752 345566777
Q ss_pred HHhcchhHHHHHHHHH
Q 013085 113 LLAAEEIVERDAVHKA 128 (449)
Q Consensus 113 LLqtdd~~E~~~V~~s 128 (449)
+|+.+++.-+..+-.+
T Consensus 112 ~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 112 LAETGTGFARKVAVNY 127 (131)
T ss_dssp HTTSCCTHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHH
Confidence 7766555444444333
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.44 E-value=2.8 Score=43.07 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=87.1
Q ss_pred HhHHHHHHHcc-CCHHHHHHHhhhhhHhhccC--ccc----hHHHHHHhhhhhc-ccchhHHHHHhhccccccccCccch
Q 013085 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 32 ~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~F--P~L----~e~Ai~a~lDLcE-Ded~~IR~qAik~Lp~lck~~~e~v 103 (449)
..+..|+.+.+ +++....-|.+-+.|....= |-. ..-+|..++.+.. ++++.++..|...|-.+|.+++++.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999 66777777788888876433 322 2335677888885 5668899999999999999998887
Q ss_pred hhHH-----HHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhc
Q 013085 104 SKIV-----DILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (449)
Q Consensus 104 ~kia-----DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~ 149 (449)
..|+ ..|++||++.++.-...+-++|..+..-+|. |.+..+...+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 6554 5799999999888788888888887765543 34555665554
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.31 E-value=2.3 Score=42.30 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccc-----hhhHHHHHHHHHhcc-hhHHHHHHHHHHHHHHccc
Q 013085 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQD 136 (449)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~-----v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~ll~~d 136 (449)
|.+...++..+..|..++|+.||..|...|-.+|.+.+.. .......|+++|++. ++......-.+|..+-..+
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 5556667777777887888888888888888887754311 123455667777643 4444444444444432211
Q ss_pred -------hhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 137 -------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 137 -------~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..|.+..+..-+. ++++.+|..++.-|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 126 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 1234445554443 444666666665554
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.28 E-value=0.044 Score=53.68 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=83.5
Q ss_pred CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhh-hhcccchhHHHHHhhccccccccCccchhh-----HHHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILV 111 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lD-LcEDed~~IR~qAik~Lp~lck~~~e~v~k-----iaDVL~ 111 (449)
++...|.-|...+..+-..-+ -+. -++..++. |....++.||.+|...|-.++.++|+.-.. ....|.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 344567777777777766433 222 36777888 999999999999999999999999876443 345788
Q ss_pred HHHhcc-hhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 112 QLLAAE-EIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 112 QLLqtd-d~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
+||+++ ++.-+..+-++|..+.+.++. +.+..|...+. +++..+|.++...|+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-----~~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-----QQVQKLKVKSAFLLQ 192 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 999875 555566777888888865543 23344444444 455667766655544
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.16 E-value=3.8 Score=43.00 Aligned_cols=296 Identities=13% Similarity=0.068 Sum_probs=155.9
Q ss_pred HHhHHHHHHHcc-C-CHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhccccccccCccch
Q 013085 31 VKDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (449)
Q Consensus 31 ~~~y~~Il~~~k-g-~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v 103 (449)
......++...+ + ++.+++-|+..+..+.++ ++... .++..++.+..+.+..||..|+..|-.+|.++++..
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 345566666554 3 788999999988865554 43322 378899999999999999999999999998865554
Q ss_pred -----hhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 104 -----SKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 104 -----~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
..+...|+++|+++++.+...+-.+|..+-..++. +.+..+..-+.+ ...+.+++.+..-|..
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~----~~~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----YTYEKLLWTTSRVLKV 209 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT----CCCHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc----CChHHHHHHHHHHHHH
Confidence 34567899999988876666666666666543322 344555544442 2235566655554431
Q ss_pred hcc--cchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 013085 171 KVF--PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVS 248 (449)
Q Consensus 171 kl~--~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~s 248 (449)
--. ..+..+ ++.-++..+-+.|.+-+..-....+..|..+....+.. .....++..+.... ...
T Consensus 210 Ls~~~~~~~~l------~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL------~~~ 275 (644)
T 2z6h_A 210 LSVCSSNKPAI------VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL------GSD 275 (644)
T ss_dssp HTTCTTHHHHH------HHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHT------TCS
T ss_pred HhcCcccHHHH------HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHH------cCC
Confidence 100 001111 11112334444454433222233455555554332211 11233444444431 223
Q ss_pred ChhhHHHHHHHHHHhhhhhccCCChhhHHHHHH-HhhccCCCCC----C--hhhhHHHHHHHHhhCCCCChhh-Hhh-hh
Q 013085 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPVFDKL----P--EERKLDLLKALAEISPYTTPQD-SRQ-IL 319 (449)
Q Consensus 249 D~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~-~~VlP~l~~L----~--e~~kL~lLK~lAE~s~~~~~~d-a~~-~l 319 (449)
|++. ..+.-.++-.++.+... .-..+. ..++|.+-.+ + ++.+...++.|.-++...+..+ .+. .+
T Consensus 276 d~~v----~~~a~~aL~~L~~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~ 349 (644)
T 2z6h_A 276 DINV----VTCAAGILSNLTCNNYK--NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349 (644)
T ss_dssp CHHH----HHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CHHH----HHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4433 23333333333333211 111111 2233322222 1 3667788888888876544322 111 11
Q ss_pred -HHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhh
Q 013085 320 -PSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAH 357 (449)
Q Consensus 320 -~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~ 357 (449)
......|.+.+-.+ -.....+..+.++.+|+.
T Consensus 350 ~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 350 LHYGLPVVVKLLHPP------SHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HTTHHHHHHHTTSTT------CCHHHHHHHHHHHHHHTT
T ss_pred HccChHHHHHHhCcc------CchHHHHHHHHHHHHHcc
Confidence 12344555555321 235667777777777775
No 52
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.57 E-value=3.2 Score=45.35 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhhhhccccccCHHhHHHHHH----HccCCHHHHHHHhhhhhHhhccC---ccchHHHHHHhhhhhcccc
Q 013085 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIE----AAKTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEE 81 (449)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~----~~kg~~k~K~LaAqfI~kffk~F---P~L~e~Ai~a~lDLcEDed 81 (449)
..+|..+-..+.+++.-..... .-...++. ...+++.++.=+..+|.+|-..+ |+.-...++.++....|
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-- 540 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-- 540 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhhcCchhh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--
Confidence 4455555555666554332111 11123333 22257888888888888876543 45556677777776654
Q ss_pred hhHHHHHhhccccccccCccc----hhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHHccc
Q 013085 82 LGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQD 136 (449)
Q Consensus 82 ~~IR~qAik~Lp~lck~~~e~----v~kiaDVL~QLLqtd--d~~E~~~V~~sL~~ll~~d 136 (449)
+.||..|...|-.+|++-++. ++.+.+.|.++++.. +..+...+-.++..++..-
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 789999999999999876554 444555556666642 4567777788888887643
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.45 E-value=0.31 Score=44.67 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=47.4
Q ss_pred ccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Q 013085 60 KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 60 k~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~ 134 (449)
+.|-...+.-+.++++.+.|....||..|...|-.++... .+..+.+.|...|+...+.-...+-..|..++.
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--SLEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3444455666777777777777777777777777776653 256666667777776666666666666666543
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.26 E-value=4.3 Score=44.24 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=89.5
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccc-----hHHHHHHhhhhhcc-cchhHHHHHhhccccccccCccchhh-
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK- 105 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L-----~e~Ai~a~lDLcED-ed~~IR~qAik~Lp~lck~~~e~v~k- 105 (449)
...++...+ +++.+++-|+..+....++.+.. ...++.+++.+..+ +|+.+|..|.+.|-.++++. ++...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i 230 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAI 230 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence 344444333 78899999999999887765432 34688998888764 48999999999999998863 44333
Q ss_pred ----HHHHHHHHHhcchhHHHHHHHHHHHHHHccch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 106 ----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
+...|+++|+++++.-...+-.+|..+...++ .+.+..+..-+. +++..+|+.+...|
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-----~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----KTNVKFLAITTDCL 300 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-----CCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHH
Confidence 45678999999887766677777777765432 345566666665 34556777655444
No 55
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.89 E-value=0.39 Score=46.44 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=83.9
Q ss_pred HHhHHHHHH-Hcc-CCHHHHHHHhhhhhHhhc-cCccchHHHHHHhhhhhcccchhHHHHHhhcccccccc--Cccchhh
Q 013085 31 VKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFK-FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSK 105 (449)
Q Consensus 31 ~~~y~~Il~-~~k-g~~k~K~LaAqfI~kffk-~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~--~~e~v~k 105 (449)
.+....|-. .+. .+=.+.-.+|..+.++.+ ..|+. ++..+..++.|++.-||+.|+-++...|+- -+....+
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ 178 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE 178 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH
Confidence 444444444 343 566788888999999996 88884 677888999999999999999998777753 1133455
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHh
Q 013085 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (449)
Q Consensus 106 iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~q 147 (449)
+..+|..|...++.--...|=|+|+.+-|-||.-+..-+=.+
T Consensus 179 ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 179 AIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKNW 220 (240)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh
Confidence 566666666666666688999999999999998776655544
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.41 Score=45.18 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=87.7
Q ss_pred cCCHHHHHHHhhhhhHhhc-----cCc-cchHHHHHHhhhhhcccchhHHHHHhhccccccccCc-----cchhhHHHHH
Q 013085 42 KTSLKAKQLAAQLIPRFFK-----FFP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP-----EYLSKIVDIL 110 (449)
Q Consensus 42 kg~~k~K~LaAqfI~kffk-----~FP-~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~-----e~v~kiaDVL 110 (449)
+.+..+...|++-|..+.+ .|. .....-+-++++...|-...||..|...|-.+|...+ -|+..+.+.|
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDI 151 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHH
Confidence 3677788888887776655 444 5667788899999999999999999999999988652 2366777888
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHccchh--hHHHHHH-HhhccC---CCCCChHHHHHHHHHHHh
Q 013085 111 VQLLAAEEIVERDAVHKALMSLLRQDVK--ASLTALF-KHIGSV---DEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 111 ~QLLqtdd~~E~~~V~~sL~~ll~~d~k--~tL~~lf-~qI~~~---~~~~~ee~~Re~~l~Fl~ 169 (449)
...|++..+.....+-+.|..++..-++ ..+...+ .+|.+. -....+..+|+.+..-+.
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8888888888888888888888866553 2333333 222210 001334567776666554
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.54 E-value=4 Score=45.10 Aligned_cols=266 Identities=11% Similarity=0.077 Sum_probs=137.8
Q ss_pred CHHHHHHHhhhhhHhhccCc-cchHHHHHHhhhhhcccchhHHHHHhhcccccccc-C----------c----cchhhHH
Q 013085 44 SLKAKQLAAQLIPRFFKFFP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-T----------P----EYLSKIV 107 (449)
Q Consensus 44 ~~k~K~LaAqfI~kffk~FP-~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~-~----------~----e~v~kia 107 (449)
++.++.=|+-+|.+|-..++ +.-...+.+++....|++..||..|..+|-.||.. + + .|+..+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 78999999999999988875 56677788888888899999999999999999873 1 1 2345555
Q ss_pred HHHHHHHhcc-----hhHHHHHHHHHHHHHHccchh----------hHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhc
Q 013085 108 DILVQLLAAE-----EIVERDAVHKALMSLLRQDVK----------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (449)
Q Consensus 108 DVL~QLLqtd-----d~~E~~~V~~sL~~ll~~d~k----------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl 172 (449)
..|.++++.. ...|.+.+-.+|.++...-+. ..|..++.++.. ..++...+..++.-|..=+
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~---~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK---NPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHH
Confidence 5556666653 122445666777766543211 112333333321 1233455655555444322
Q ss_pred ccchhhhcCChHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 013085 173 FPLKAELLKPQEEMERHITDLIKKSLED----VTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVS 248 (449)
Q Consensus 173 ~~l~~e~l~~~~E~E~~i~~~ikK~L~d----Vt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~s 248 (449)
....++. ....+..+...+..+|+. +.++=|.++-.++...+.+ +++ +.+++..+..-..+++.
T Consensus 628 ~~~~~~~---~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~----~~~-~~~~~~~l~~~~~~~~~---- 695 (960)
T 1wa5_C 628 NYTQRQN---LPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATI----PES-IKPLAQPLLAPNVWELK---- 695 (960)
T ss_dssp HTSCGGG---HHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSC----CTT-TGGGHHHHTSGGGGCCT----
T ss_pred hcCCcch---HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCC----CHH-HHHHHHHHcCHHHhcCC----
Confidence 2222222 234666777777776642 2222222222333222222 223 45566555522223221
Q ss_pred ChhhHHHHHHHHHHhhhhhccCCC-hhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHH
Q 013085 249 DADHIDRLISCLYMALPFFLRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK 327 (449)
Q Consensus 249 D~d~vdrli~Cl~~AlP~fS~~v~-Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~ 327 (449)
..+.-+..++..-+.....+.. -...+.- +.+++- ++.++ -..+..+.+++.+|+...-...++.++..|.
T Consensus 696 --~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~~---~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~ 767 (960)
T 1wa5_C 696 --GNIPAVTRLLKSFIKTDSSIFPDLVPVLGI-FQRLIA--SKAYE---VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLL 767 (960)
T ss_dssp --TTHHHHHHHHHHHHHHHGGGCSCSHHHHHH-HHHHHT--CTTTH---HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHhChHHHHHHHHHHHH-HHHHhC--CCccc---chHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 1222222222221111111111 1222222 222221 11122 4456666666666765546788999999998
Q ss_pred hhCCC
Q 013085 328 KYMPL 332 (449)
Q Consensus 328 ~ymP~ 332 (449)
..+-.
T Consensus 768 ~~l~~ 772 (960)
T 1wa5_C 768 QRLQN 772 (960)
T ss_dssp HGGGS
T ss_pred HHHhh
Confidence 87643
No 58
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.43 E-value=2.7 Score=43.42 Aligned_cols=183 Identities=19% Similarity=0.267 Sum_probs=108.0
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHH
Q 013085 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189 (449)
Q Consensus 110 L~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~ 189 (449)
|..|+.|+||.|++.++..|..++ |.+.++-..|. ..+..-...|+-+- -.+.-+ .|.=+.
T Consensus 134 Ll~lfdSeDprER~~LktiLhrIY-----~kf~~~R~~Ir--------k~innif~~fiye~---e~~~GI---aeLLei 194 (403)
T 3fga_B 134 LLELFDSEDPRERDFLKTTLHRIY-----GKFLGLRAYIR--------KQINNIFYRFIYET---EHHNGI---AELLEI 194 (403)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHH-----HHCHHHHHHHH--------HHHHHHHHHHHHTT---CCCTTH---HHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHH-----HhhhhhHHHHH--------HHHHHHHHHHhcCc---ccCCCH---HHHHHH
Confidence 456778999999999999999988 44444433332 11223345566431 111111 121111
Q ss_pred HHHHHHhhccccchHHHHHH-HHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhhhc
Q 013085 190 ITDLIKKSLEDVTGAEFRMF-MDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFL 268 (449)
Q Consensus 190 i~~~ikK~L~dVt~~EF~l~-m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~fS 268 (449)
+-.-|+---... .+|...| +.+|-.|+.-+. - ...-.+|..|+.+ |++
T Consensus 195 lgsIinGfa~PL-keehk~fl~~vLlPLHk~~~--~-------------------------~~y~~qL~ycv~q---f~e 243 (403)
T 3fga_B 195 LGSIINGFALPL-KEEHKIFLLKVLLPLHKVKS--L-------------------------SVYHPQLAYCVVQ---FLE 243 (403)
T ss_dssp HHHHHHHCCSSC-CHHHHHHHHHTTTGGGGSTT--G-------------------------GGTHHHHHHHHHH---HHH
T ss_pred HHHHHcccCCCc-hHHHHHHHHHHHHHHHcCCc--c-------------------------hhhHHHHHHHHHH---HHH
Confidence 111111100011 1233333 454444433211 0 1223467777777 555
Q ss_pred cCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHH
Q 013085 269 RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECL 348 (449)
Q Consensus 269 ~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcL 348 (449)
+.. .+...+.+.++-+|-.-....+.-+|.-+.|+...+++.+-......+|..+...+- +-+|.+.|--
T Consensus 244 KDp---~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~-------S~hfqVAErA 313 (403)
T 3fga_B 244 KDS---TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVS-------SPHFQVAERA 313 (403)
T ss_dssp HCG---GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHT-------CSCHHHHHHH
T ss_pred hCc---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHH
Confidence 544 344445555666666665678889999999999999988888999999999999993 3588888887
Q ss_pred HHHH
Q 013085 349 LYTF 352 (449)
Q Consensus 349 Lyaf 352 (449)
||.+
T Consensus 314 L~~w 317 (403)
T 3fga_B 314 LYYW 317 (403)
T ss_dssp HGGG
T ss_pred HHHh
Confidence 7765
No 59
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.26 E-value=0.12 Score=50.26 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred CccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHH
Q 013085 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (449)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL 141 (449)
=|++-++-++.++.+..|.+..||++.+.=|-+.|+..+++++++.+.|.-||..+++.-+..+=.+..++|+
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~------- 119 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK------- 119 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-------
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 4788888889999999999999999999999999999999999999999999997776554444444444552
Q ss_pred HHHHHhhcc
Q 013085 142 TALFKHIGS 150 (449)
Q Consensus 142 ~~lf~qI~~ 150 (449)
..|.++..
T Consensus 120 -~~l~~i~~ 127 (257)
T 3gs3_A 120 -NGLQYLCS 127 (257)
T ss_dssp -HHHHHHTT
T ss_pred -HHHHHHhc
Confidence 36666663
No 60
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.04 E-value=0.67 Score=47.71 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
...++.... ++..++.-|+..|......-++.... ++..+..|..+.+..||+.|...|..+|.+++++...+.
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 334444444 66777777777777776666655443 445678888889999999999999999998888766554
Q ss_pred H-----HHHHHHhcchhHHHHHHHHHHHHHH
Q 013085 108 D-----ILVQLLAAEEIVERDAVHKALMSLL 133 (449)
Q Consensus 108 D-----VL~QLLqtdd~~E~~~V~~sL~~ll 133 (449)
| .|.++|++.+..-...+-.+|..+.
T Consensus 375 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 6788888877665555555555544
No 61
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.01 E-value=0.11 Score=53.30 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=63.4
Q ss_pred cCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 013085 61 FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (449)
Q Consensus 61 ~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll 133 (449)
.=|+|-++-++-++.++-|.+..||++.+.=|-+.|+..+++++++.|+|.-||..+++.-+..|=.+..++|
T Consensus 56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678888889999999999999999999999999999999999999999999999877765555555555665
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.92 E-value=1.7 Score=40.96 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=89.6
Q ss_pred hHHHHHHHccCCHHHHHHHhhhhhH-hhccCccch------HHHHHHhhhhh-cccchhHHHHHhhccccccccCc--cc
Q 013085 33 DYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLS------SRAVDAHLDLI-EEEELGVRVQAIRGLPLFCKDTP--EY 102 (449)
Q Consensus 33 ~y~~Il~~~kg~~k~K~LaAqfI~k-ffk~FP~L~------e~Ai~a~lDLc-EDed~~IR~qAik~Lp~lck~~~--e~ 102 (449)
+|..-|. ....++++=|..-|.. +...-|++. .+.++++.... .|.+..||..|++.|-.+|++-. ++
T Consensus 20 ~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 20 DFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 4444442 2455566666666666 654444433 46688888888 79999999999999999998653 44
Q ss_pred h-hhHHHHHHHHHh-cch--hHHHHHHHHHHHHHHccc--------hhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 103 L-SKIVDILVQLLA-AEE--IVERDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 103 v-~kiaDVL~QLLq-tdd--~~E~~~V~~sL~~ll~~d--------~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
- +-...+|..+|. ..| +.-.+++..+|.+++..- ....+..++..+. +....+|+.++.||..
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-----~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-----HKTPQIRMECTQLFNA 172 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----CCChHHHHHHHHHHHH
Confidence 3 444456666664 133 455688899999998732 2234455555544 4456899999999986
Q ss_pred hcccc
Q 013085 171 KVFPL 175 (449)
Q Consensus 171 kl~~l 175 (449)
-+..-
T Consensus 173 ~~~~~ 177 (249)
T 2qk1_A 173 SMKEE 177 (249)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 65443
No 63
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.02 E-value=0.81 Score=47.03 Aligned_cols=131 Identities=14% Similarity=0.179 Sum_probs=88.0
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
...++.... ++..++.-|+..|......-++.... ++..+..|..+.+..||+.|...|..+|.+++++...+.
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 344555444 67788888888888877766665544 344677888999999999999999999999988876554
Q ss_pred -----HHHHHHHhcchhHHHHHHHHHHHHHHcc-ch--------hhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 108 -----DILVQLLAAEEIVERDAVHKALMSLLRQ-DV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 108 -----DVL~QLLqtdd~~E~~~V~~sL~~ll~~-d~--------k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..|+++|++.+..-...+-.+|..+... ++ .|.+..|++-+. +.|..++..++.-|.
T Consensus 356 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-----~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-----AKDTKIIQVILDAIS 426 (510)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-----CSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 4688899888776666666666555432 11 244555555544 444556666555443
No 64
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.71 E-value=2 Score=44.90 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCC
Q 013085 254 DRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLR 333 (449)
Q Consensus 254 drli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~ 333 (449)
.+|..|+.+ |+.+.. .+...+.+.+|-+|-.-....+.-+|.-+.|+...+++.+-......+|..|...+-+
T Consensus 265 ~qL~ycv~q---f~eKDp---~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S- 337 (449)
T 2npp_B 265 PQLAYCVVQ---FLEKDS---TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS- 337 (449)
T ss_dssp HHHHHHHHH---HHHHCG---GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHH---HHhcCc---HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC-
Confidence 366677777 444433 3444555666666666656788899999999999999888888999999999999943
Q ss_pred CCCCCCcchHHHHHHHHHH
Q 013085 334 KTGGEEMNFTYVECLLYTF 352 (449)
Q Consensus 334 ~~~~~~l~fs~VEcLLyaf 352 (449)
.+|.+.|--||.+
T Consensus 338 ------~hfqVAErAL~~w 350 (449)
T 2npp_B 338 ------PHFQVAERALYYW 350 (449)
T ss_dssp ------SCHHHHHHHHGGG
T ss_pred ------CCHHHHHHHHHHH
Confidence 6777777777654
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.55 E-value=9.1 Score=42.01 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCHHHHHHHhhhhhHhhccC---ccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccch----hhHHHHHHHHHh
Q 013085 43 TSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----SKIVDILVQLLA 115 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v----~kiaDVL~QLLq 115 (449)
+++.++.=|...|.+|...+ |+.-..+++.++... | +.||..|...|-.||++-+..+ +-+.+.|.++++
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 37888888888888876543 567778888888777 4 7889999999999998765443 344445556666
Q ss_pred c--chhHHHHHHHHHHHHHHcc
Q 013085 116 A--EEIVERDAVHKALMSLLRQ 135 (449)
Q Consensus 116 t--dd~~E~~~V~~sL~~ll~~ 135 (449)
. -+..+...+-.++..++..
T Consensus 595 ~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 595 TGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp STTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHh
Confidence 5 2456677777777777753
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.48 E-value=8 Score=43.66 Aligned_cols=282 Identities=14% Similarity=0.165 Sum_probs=131.2
Q ss_pred HHHHhhhhhhcccc-ccCHHh------------HHHHHHHcc-C-CHHHHHHHhhhh---hHhhccCccchH--------
Q 013085 14 LYEFGERLNEAKDK-SQNVKD------------YEGIIEAAK-T-SLKAKQLAAQLI---PRFFKFFPDLSS-------- 67 (449)
Q Consensus 14 LY~~~~~L~~akd~-~~~~~~------------y~~Il~~~k-g-~~k~K~LaAqfI---~kffk~FP~L~e-------- 67 (449)
||+.-|.|-++... .+.... .+..+...+ + +... .+.+.| .+..|-|++...
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~ 696 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence 99999999887542 222222 222232233 2 3322 222333 556666655422
Q ss_pred --HHHHHhhhhhc--ccchhHHHHHhhcccc----ccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh
Q 013085 68 --RAVDAHLDLIE--EEELGVRVQAIRGLPL----FCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (449)
Q Consensus 68 --~Ai~a~lDLcE--Ded~~IR~qAik~Lp~----lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~ 139 (449)
+++.+++..++ -.+..||-.+.+.+-. +-.+--.+++++++.|.+-++..+-.+.-.+-+-++.-|+.+-..
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~ 776 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMME 776 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 5677787666554433 333333557777777776666777788878888888888877555
Q ss_pred HHHHHHHhhcc----C--CCCCChHHHH------HHHHHHHhhhccc-chhhhcCC--hHHHHHHHHHHHHhh--ccccc
Q 013085 140 SLTALFKHIGS----V--DEPSTDEFIR------EKVLSFIRDKVFP-LKAELLKP--QEEMERHITDLIKKS--LEDVT 202 (449)
Q Consensus 140 tL~~lf~qI~~----~--~~~~~ee~~R------e~~l~Fl~~kl~~-l~~e~l~~--~~E~E~~i~~~ikK~--L~dVt 202 (449)
.|..++..+.. . ..+.|+|++| +--+.|+..-+.+ +.+-++.. +...+..+...+.=. +.|.+
T Consensus 777 ~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~ 856 (980)
T 3ibv_A 777 ITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPA 856 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChH
Confidence 55444433221 0 1123444444 3445788765553 33333321 112444444444211 12322
Q ss_pred hHHHHHHHHHHHhc-cccCC-CCchhHHHHHHHHHHhhhc---ccCCCCCCChhhHHHHHHHHHHhhhhhccCCChhhHH
Q 013085 203 GAEFRMFMDFLKSL-SLFGE-KAPTERMKELIGIIEGQAD---LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFL 277 (449)
Q Consensus 203 ~~EF~l~m~lL~~l-~~~~~-~~p~~~~qeLv~~i~eqa~---Ld~~f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv 277 (449)
.. .+-+.+|..+ +.+++ ...+|=.+-+++ +.--+. ++..||.+|.++.==+-.+...-.-++.+ .+..|+
T Consensus 857 ~~--K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~--~g~~~~ 931 (980)
T 3ibv_A 857 TQ--KSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEK--LGDIYK 931 (980)
T ss_dssp HH--HHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HH--HHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHh--cCHHHH
Confidence 11 1223333322 22322 113342344566 444322 77889999998643221221111112222 257899
Q ss_pred HHHHHhhccCCCCCChhhhHHHHHHH
Q 013085 278 NYLNKHIIPVFDKLPEERKLDLLKAL 303 (449)
Q Consensus 278 ~y~~~~VlP~l~~L~e~~kL~lLK~l 303 (449)
+|+-+..||.++ +|++.-.++.+.|
T Consensus 932 ~~l~~~~lp~~~-~~~~~~~~~~~~l 956 (980)
T 3ibv_A 932 SYLVTVYFPTVN-FPDVMASEYLQAL 956 (980)
T ss_dssp HHHHHTTTTC-----CCHHHHHHHC-
T ss_pred HHHHHhcCCcCC-CCHHHHHHHHHHH
Confidence 999999999775 5665555655555
No 67
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=91.17 E-value=1.7 Score=44.77 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhhCCCCC
Q 013085 255 RLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRK 334 (449)
Q Consensus 255 rli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~ymP~~~ 334 (449)
+|..|+.+ |+.+.. ++...+.+.++-+|-.-....+.-+|..+.|+...+++.+-.+....+|..|.+.+-
T Consensus 278 qL~ycv~q---f~eKDp---~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~--- 348 (392)
T 2jak_A 278 QLAYCVVQ---FLEKDS---TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVS--- 348 (392)
T ss_dssp HHHHHHHH---HHHHCG---GGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHH---HHhcCc---hhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHc---
Confidence 56667766 334433 344455566666666555577889999999999999998889999999999999993
Q ss_pred CCCCCcchHHHHHHHHHH
Q 013085 335 TGGEEMNFTYVECLLYTF 352 (449)
Q Consensus 335 ~~~~~l~fs~VEcLLyaf 352 (449)
+-+|.+.|--||.+
T Consensus 349 ----S~hfqVAErAL~~w 362 (392)
T 2jak_A 349 ----SPHFQVAERALYYW 362 (392)
T ss_dssp ----CSSHHHHHHHHGGG
T ss_pred ----CCcHHHHHHHHHHh
Confidence 37899999988865
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=90.56 E-value=0.58 Score=47.59 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=74.5
Q ss_pred CCHHHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH-----HHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV-----DILVQ 112 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia-----DVL~Q 112 (449)
+++.++.-|+..|.+.-.+-|... .-+|..++.+...+++.++..|...|-.++.+++++-..|+ ..|++
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 678889999999988876666655 44678899999999999999999999999999888877774 48999
Q ss_pred HHh-cchhHHHHHHHHHHHHHHc
Q 013085 113 LLA-AEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 113 LLq-tdd~~E~~~V~~sL~~ll~ 134 (449)
||. +.++.-...+-.+|..+-.
T Consensus 94 lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 94 LLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHHhc
Confidence 998 7776666666667766554
No 69
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.26 E-value=30 Score=37.91 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=12.9
Q ss_pred CChhhHHHHHHHHHHhhhh
Q 013085 248 SDADHIDRLISCLYMALPF 266 (449)
Q Consensus 248 sD~d~vdrli~Cl~~AlP~ 266 (449)
.+||.++-++..+...+.+
T Consensus 797 ~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 797 NISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp HTHHHHHHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHHHh
Confidence 3677778777777666643
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=86.00 E-value=2.9 Score=42.17 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=78.3
Q ss_pred HHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHh
Q 013085 37 IIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA 115 (449)
Q Consensus 37 Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq 115 (449)
++.... .+...|||.=-.|--|.+. |+..=-|+|++..=|.|.++-||--|||.|..++- |+.+.-+..-+.|.|+
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQAIERYMKQAIV 149 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHHHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHcC
Confidence 333444 6778899988888777776 77777888998888888999999999999999864 3788888888888988
Q ss_pred cchhHHHHHHHHHHHHHHccchhhHHHHHHHh
Q 013085 116 AEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (449)
Q Consensus 116 tdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~q 147 (449)
..+|--+...=-+..-++..+|.. ..++++.
T Consensus 150 d~~pyVRk~A~l~~~kL~~~~pe~-v~~~~~~ 180 (355)
T 3tjz_B 150 DKVPSVSSSALVSSLHLLKCSFDV-VKRWVNE 180 (355)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCHHH-HHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCHHH-HHHHHHH
Confidence 888877665555555555566543 2344443
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=86.00 E-value=2.2 Score=47.53 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=71.3
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCccch-hhH-----------HHHHHHHHhcchhHHHHHHHHHHHHHHcc
Q 013085 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-SKI-----------VDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (449)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v-~ki-----------aDVL~QLLqtdd~~E~~~V~~sL~~ll~~ 135 (449)
.|+.++.+|+.+++..||+.|..-+-.++. +|+-+ .++ ..+|++|++++|.....++-.+|..+-..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999888888875 44432 122 46899999999999999888888888665
Q ss_pred chhh------------HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 013085 136 DVKA------------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (449)
Q Consensus 136 d~k~------------tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~ 170 (449)
+|.. .+-++|... .+++.+|.|.+.++..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~------~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQ------IDDIELRQRLLMLFFG 725 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhcc------CCCHHHHHHHHHHHHH
Confidence 6542 233333322 2677899998888874
No 72
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=84.36 E-value=28 Score=38.91 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=59.9
Q ss_pred HhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccc------------hhhHHHHHHHHHhcchhHHHHH
Q 013085 57 RFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY------------LSKIVDILVQLLAAEEIVERDA 124 (449)
Q Consensus 57 kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~------------v~kiaDVL~QLLqtdd~~E~~~ 124 (449)
+||+.-|+.-..+++.+++...|.++.||..|-..|-.||++.+.+ +..+.+.|.++++.-++.+...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5566678888899999999999999999999999999999875543 3444444555666555666667
Q ss_pred HHHHHHHHHccch
Q 013085 125 VHKALMSLLRQDV 137 (449)
Q Consensus 125 V~~sL~~ll~~d~ 137 (449)
+-.|+..++..-|
T Consensus 609 ~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 609 FYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 7777777765444
No 73
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.52 E-value=40 Score=36.62 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCHHHHHHHhhhhhHhhcc-CccchHHHHHHhhhhhcc-----cchhHHHHHhhcccccccc-----------------C
Q 013085 43 TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEE-----EELGVRVQAIRGLPLFCKD-----------------T 99 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~-FP~L~e~Ai~a~lDLcED-----ed~~IR~qAik~Lp~lck~-----------------~ 99 (449)
+...++.=.++.|...+++ ||+-=.+.+..++.++.. .+...+..++.-|-.+|.+ =
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 4577777777777776664 443334555666665543 2333444554444433321 0
Q ss_pred ccchhhHHHHHHHHHhcchhHHHHHHHHHHHHH---Hccch-----hhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhh
Q 013085 100 PEYLSKIVDILVQLLAAEEIVERDAVHKALMSL---LRQDV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (449)
Q Consensus 100 ~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~l---l~~d~-----k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~k 171 (449)
..+++.|.++|.++|+..+..+ .+++.+|..+ +..+. ...+..+|+.+. ++.+|+.+++.+.+-
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~-~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~-------~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPS-CVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ-------DSELFDSSVEAIVNA 266 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCH-HHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT-------STTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC-------CchHHHHHHHHHHHH
Confidence 2567888888999996432221 1444444433 22111 223444554432 345777777776643
No 74
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.77 E-value=68 Score=36.13 Aligned_cols=262 Identities=13% Similarity=0.119 Sum_probs=137.0
Q ss_pred cCCHHHHHHHhhhhhHhhccC---ccchHHHHHHhhh--hhcccchhHHHHHhhccccccccCccchhhHH-HHH---HH
Q 013085 42 KTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLD--LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV-DIL---VQ 112 (449)
Q Consensus 42 kg~~k~K~LaAqfI~kffk~F---P~L~e~Ai~a~lD--LcEDed~~IR~qAik~Lp~lck~~~e~v~kia-DVL---~Q 112 (449)
..++.+...+...|.||-+.| |++-..+++.+++ -..+.+..||..|-..+-.||++.+.++.--+ +|| ..
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 477999999999999976665 7888899999999 88899999999999999999999876653333 333 23
Q ss_pred HHhc-chh---HH------HHHHH----HHHHHHHccchhhHHHHHHHhhccCCCCCChHH--HHHHHHHHHhhhcccch
Q 013085 113 LLAA-EEI---VE------RDAVH----KALMSLLRQDVKASLTALFKHIGSVDEPSTDEF--IREKVLSFIRDKVFPLK 176 (449)
Q Consensus 113 LLqt-dd~---~E------~~~V~----~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~--~Re~~l~Fl~~kl~~l~ 176 (449)
+|+. -++ .| -+++. ++.+-++ .+++.+.+.... | .++. .=+.++..+..++...-
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~-----eaig~li~~~~~---~-~e~~~~~l~~ll~pl~~~l~~~l 656 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLF-----ETVGVLISSGNL---T-PEEQALYCDSLINALIGKANAAL 656 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHH-----HHHHHHHHHSCC---C-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHH-----HHHHHHHhCCCC---C-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3441 011 11 12222 2344454 445555544321 1 1111 11333344333332221
Q ss_pred hhhcCChHHHHHHHHHHHHhhccccchHHHHHHH---HHHHhccccCCCCch--hHHHHHHHHHHhhhcccCCCCCCChh
Q 013085 177 AELLKPQEEMERHITDLIKKSLEDVTGAEFRMFM---DFLKSLSLFGEKAPT--ERMKELIGIIEGQADLDAQFNVSDAD 251 (449)
Q Consensus 177 ~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m---~lL~~l~~~~~~~p~--~~~qeLv~~i~eqa~Ld~~f~~sD~d 251 (449)
.... ++.+ ..+ .+- .++| .+.+.++....+.++ .-.++..+.+..- |+ .| +.+..
T Consensus 657 ~~~~-~~~~--~~~--~i~-----------~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~--l~-~~-~~~~~ 716 (980)
T 3ibv_A 657 SSDL-SALE--NII--SVY-----------CSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLI--LD-RM-GFNED 716 (980)
T ss_dssp TTSC-C--C--HHH--HHH-----------HHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHH--HH-HS-CCSHH
T ss_pred hhcc-cCcc--HHH--HHH-----------HHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHH--HH-hc-CCcHH
Confidence 1100 0000 000 100 1122 233333332222111 1122333333221 11 13 35678
Q ss_pred hHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChh---hHhhhhHHHHHHHHh
Q 013085 252 HIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQ---DSRQILPSVAVLLKK 328 (449)
Q Consensus 252 ~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~---da~~~l~~i~~~L~~ 328 (449)
-.++...|++++++.+.. ...+++.=+++.++..++ ...--++|..+..+..-.+.+ --.++++++.+....
T Consensus 717 irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 717 IRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSID---MNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCC---TTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999887743 366777777777775433 233345555555554322321 145677777777777
Q ss_pred hCCCCCCCC
Q 013085 329 YMPLRKTGG 337 (449)
Q Consensus 329 ymP~~~~~~ 337 (449)
.+..|++++
T Consensus 792 ~l~~~~~~t 800 (980)
T 3ibv_A 792 SLSAAPQGT 800 (980)
T ss_dssp HTTC----C
T ss_pred HhcCCCCCc
Confidence 787776643
No 75
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=82.53 E-value=2.9 Score=39.20 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=79.7
Q ss_pred HHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH
Q 013085 46 KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV 125 (449)
Q Consensus 46 k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V 125 (449)
-.=.+|...+.+|++..|+. +..-+.....|++.-+|+.||-.+-..-++ ........++..++..++.=-..+|
T Consensus 112 ~~D~~a~~~~g~~~~~~p~~---~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~--~d~~~~~~~i~~~~~d~~~yV~kAv 186 (232)
T 3jxy_A 112 SVDSIVPTFLGDIFLKHPEL---ISAYIPKWIASDNIWLQRAAILFQLKYKQK--MDEELLFWIIGQLHSSKEFFIQKAI 186 (232)
T ss_dssp HHHHHTTTHHHHHHHHCGGG---GGGTHHHHHHSSCHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHCHHH---HHHHHHHHhcCCchHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33556778888999998872 334577899999999999998776544322 2234455677778888888888899
Q ss_pred HHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 126 HKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 126 ~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
-++|.++.+-||..++.-+=.+ .-+..++..+++.|
T Consensus 187 gW~Lr~~~k~~p~~v~~fl~~~-------~l~~~~~r~A~k~l 222 (232)
T 3jxy_A 187 GWVLREYAKTNPDVVWEYVQNN-------ELAPLSKREAIKHI 222 (232)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHS-------CCCHHHHHHHTTTT
T ss_pred HHHHHHHHhhCHHHHHHHHHHC-------CCCHHHHHHHHHhc
Confidence 9999999999999887766554 12245555555544
No 76
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=82.47 E-value=4.3 Score=38.42 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=60.9
Q ss_pred HHHHHHcc-CCH--HHHHHHhhhhhHhhccCccch-----HHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH
Q 013085 35 EGIIEAAK-TSL--KAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI 106 (449)
Q Consensus 35 ~~Il~~~k-g~~--k~K~LaAqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki 106 (449)
..++.... +++ .++.-||..|..--..-|+-. .-+|-.+++|...++..||.+|...|-.++.+++++-..|
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444 444 566666666665444444333 2367788999999999999999999999999887775555
Q ss_pred -----HHHHHHHHh-cchhHHHHH
Q 013085 107 -----VDILVQLLA-AEEIVERDA 124 (449)
Q Consensus 107 -----aDVL~QLLq-tdd~~E~~~ 124 (449)
...|++||. +.+......
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~ 114 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQ 114 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHH
Confidence 346899997 445443333
No 77
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=81.89 E-value=7.3 Score=37.12 Aligned_cols=172 Identities=16% Similarity=0.256 Sum_probs=98.9
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHh-hhh
Q 013085 188 RHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPF 266 (449)
Q Consensus 188 ~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~A-lP~ 266 (449)
+.+...++-+|..+|.+-|..+.+=|..+.+ .++ .+.+.++++|.++|=.+..| .....+|..++... +|-
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i---~~~-~~l~~vi~~if~kA~~ep~f----~~~YA~Lc~~L~~~~~p~ 80 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTV---DTE-ERLKGVIDLVFEKAIDEPSF----SVAYANMCRCLVTLKVPM 80 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCC---CSH-HHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC---CCH-HHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHhhCCc
Confidence 4455667778888999999888765555543 233 46788999999998776555 45667888877663 565
Q ss_pred hccCCChhhHHHHHHHhhccC----CC----------CC-----Ch-----------------hhhHHHHHHHHhhCCCC
Q 013085 267 FLRGASGSKFLNYLNKHIIPV----FD----------KL-----PE-----------------ERKLDLLKALAEISPYT 310 (449)
Q Consensus 267 fS~~v~Stkfv~y~~~~VlP~----l~----------~L-----~e-----------------~~kL~lLK~lAE~s~~~ 310 (449)
+.....+..|-.++.+..--. +. .+ |+ .+-+-..+.++|+--+
T Consensus 81 ~~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~- 159 (260)
T 1hu3_A 81 ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKL- 159 (260)
T ss_dssp --------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTT-
T ss_pred ccCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhc-
Confidence 543334555666665432211 10 01 00 1236788889999554
Q ss_pred ChhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHH
Q 013085 311 TPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKD 390 (449)
Q Consensus 311 ~~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kd 390 (449)
+.. .... +|+.+...+..|.+ ..|||+.-.+...|+..-. ++....+++
T Consensus 160 ~~l-~~~i---~~~~l~~Ll~~~~e-------~~iE~l~~lL~tvG~~L~~--------------------~~~~~~l~~ 208 (260)
T 1hu3_A 160 KML-TEAI---MHDCVVKLLKNHDE-------ESLECLCRLLTTIGKDLDF--------------------EKAKPRMDQ 208 (260)
T ss_dssp TCS-CHHH---HHHHHHHHHHSCSH-------HHHHHHHHHHHHHHHHHCC--------------------TTTHHHHHH
T ss_pred CCC-CHHH---HHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHhC--------------------cccHHHHHH
Confidence 211 1222 22323322222221 2699999999999887432 121467788
Q ss_pred HHHHHHhHH
Q 013085 391 FTERLTTVE 399 (449)
Q Consensus 391 F~~RLqy~~ 399 (449)
+..||+.+.
T Consensus 209 ~f~~l~~~~ 217 (260)
T 1hu3_A 209 YFNQMEKIV 217 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 78
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.65 E-value=5.6 Score=36.87 Aligned_cols=104 Identities=7% Similarity=-0.003 Sum_probs=74.4
Q ss_pred hhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 013085 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (449)
Q Consensus 53 qfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~l 132 (449)
..+++|++..|+. ...-+...+.|++.=+|+.||-.+-...+. .+...+-.++..++..++-=-..+|-++|.++
T Consensus 112 ~~~~~~~~~~~~~---~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~ 186 (220)
T 2b6c_A 112 KFFGSWVALHLTE---LPTIFALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQY 186 (220)
T ss_dssp HHHHHHHHHSGGG---HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4477888887764 334577899999999999999887655332 45566666777777777777788999999999
Q ss_pred HccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 133 LRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 133 l~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
.+-||..+..=+ |-. .-...++..+++.|
T Consensus 187 ~k~~~~~v~~fl--~~~-----~l~~~~~r~Aikkl 215 (220)
T 2b6c_A 187 SKTNPQWVEELM--KEL-----VLSPLAQREGSKYL 215 (220)
T ss_dssp TTTCHHHHHHHH--HHS-----CCCHHHHHHHTTTS
T ss_pred HhhCHHHHHHHH--hhc-----cCCHHHHHHHHHhc
Confidence 999999877766 322 23344555555533
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.23 E-value=1.6 Score=43.63 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCccchhhH-----HHHHHHHHhcchhHHHHHHHHHHHHHHccch
Q 013085 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (449)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~ 137 (449)
++..++.|..+.+..|+.+|...|..+|.++++....+ ...|++||++.++.-...+-.+|..+...+|
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 45566677777777777777777777776666665544 3556777776665555555566666655443
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=79.79 E-value=8.2 Score=36.81 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=93.0
Q ss_pred HHHHHhhhhhHhhccCccchHHHHHHhhhh-hcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH
Q 013085 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV 125 (449)
Q Consensus 47 ~K~LaAqfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V 125 (449)
+..=|=..|.--.+.+|+|.+.++..++-+ -.+|-...-..--|.+-++++.+|+.|.+++-||-.=+.-.|+.=.--+
T Consensus 48 V~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~ 127 (253)
T 2db0_A 48 VVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINV 127 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecH
Confidence 344566677888889999999999999988 5566555555555888999999999999999888877776677777777
Q ss_pred HHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 126 HKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 126 ~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.-+|-.+.+.+|. .+++++..|.+--+ +-++.=|--+++||.
T Consensus 128 ~yaLeeIaranP~-l~~~v~rdi~smlt-skd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 128 SYALEEIAKANPM-LMASIVRDFMSMLS-SKNREDKLTALNFIE 169 (253)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHTS-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChH-HHHHHHHHHHHHhc-CCChHHHHHHHHHHH
Confidence 8899999999885 56667766665433 445667888999997
No 81
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=79.53 E-value=52 Score=36.68 Aligned_cols=118 Identities=12% Similarity=0.241 Sum_probs=82.3
Q ss_pred HHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcc-cchhHHHHHh
Q 013085 11 IEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE-EELGVRVQAI 89 (449)
Q Consensus 11 ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcED-ed~~IR~qAi 89 (449)
|++.++.. ++.++++.+++++-.-++..++.++ .|+.| | ++.++..++-|++. .|..|...||
T Consensus 8 v~~m~~i~--~~~~~~~~~~~~a~~nl~vl~re~a-----ga~~i---~------~~~~~~~~~~l~~~~~~~~~~~~~~ 71 (810)
T 3now_A 8 VKQMMDLT--FDLATPIDKRRAAANNLVVLAKEQT-----GAELL---Y------KDHCIAKVASLTKVEKDQDIYVNMV 71 (810)
T ss_dssp HHHHHHHH--HSSCCSSHHHHHHHHHHHHHSSCHH-----HHHHH---H------HTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHH--cccccCHHHHHHHHhhceeeecccc-----chHHH---H------hCchHHHHHHHHhccCchhHHHHHH
Confidence 55555543 2245555688899999999998765 34444 2 23445566666666 7899999999
Q ss_pred hccccccccCccchhhHHHH-----HHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhc
Q 013085 90 RGLPLFCKDTPEYLSKIVDI-----LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 90 k~Lp~lck~~~e~v~kiaDV-----L~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
|-|-.+|++++++..-+... +++++.++++.-..++.+.|-.++ .+|+|+-++..
T Consensus 72 r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 131 (810)
T 3now_A 72 HLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTIL-----NALSGLKNKPD 131 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHH-----HHHHTCCSSTT
T ss_pred HHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHhccccccc
Confidence 99999999988776554433 478888888777777777776666 56666665543
No 82
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=79.42 E-value=30 Score=33.74 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=112.1
Q ss_pred HHHHHHHhhhhhhcccc-c--cCHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCc---cchHHHHHHhhhhhcccchh
Q 013085 11 IEKLYEFGERLNEAKDK-S--QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP---DLSSRAVDAHLDLIEEEELG 83 (449)
Q Consensus 11 ie~LY~~~~~L~~akd~-~--~~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP---~L~e~Ai~a~lDLcEDed~~ 83 (449)
+..|+=..+.|..+.+. . .-++-+-.||...+ .+.++.-=|...+..--..=| +-=+..++|+.|+..+.+.-
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~i 130 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDM 130 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCch
Confidence 56677777777776443 1 55666778888888 778888778777777766654 34457899999999999999
Q ss_pred HHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccc-hhhHHHHHHHhhccCCCCCChHHHHH
Q 013085 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD-VKASLTALFKHIGSVDEPSTDEFIRE 162 (449)
Q Consensus 84 IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d-~k~tL~~lf~qI~~~~~~~~ee~~Re 162 (449)
.|-.|.-.+-.+-- ....+||.|+|..|+.|.++..-.+-=.+|.++.... -++.+..+|+.|... -++.|+.+++
T Consensus 131 l~~eaae~Lgklkv--~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~el-L~~eD~~l~e 207 (265)
T 3b2a_A 131 MRIETIDVLSKLQP--LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSL-LQNDNEFIVE 207 (265)
T ss_dssp HHHHHHHHHHHCCB--SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHH-HTCSCHHHHH
T ss_pred HHHHHHHHhCcCCc--ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 99999998888822 2458999999999999999988888777777766532 122344444444211 1255778999
Q ss_pred HHHHHHh
Q 013085 163 KVLSFIR 169 (449)
Q Consensus 163 ~~l~Fl~ 169 (449)
++|.-+-
T Consensus 208 ~aLd~Le 214 (265)
T 3b2a_A 208 LALDVLE 214 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997664
No 83
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=78.37 E-value=3 Score=46.58 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccc
Q 013085 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (449)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qAik~Lp~lck 97 (449)
++..+.+|..++++.||..|.+.|-.++.
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34444444444444455554444444444
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=76.07 E-value=7.9 Score=41.53 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=78.1
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchH-----HHHHHhhhhhcccchhHHHHHhhcccccccc-Cccc
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEY 102 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~-~~e~ 102 (449)
+...-..++.... +++..+.-||..|...-...++... -+|-.++.|....+..||.+|...|-.++.+ ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 4445666777666 8899999999999887776666433 3788899999999999999999999999985 5666
Q ss_pred hhhH-----HHHHHHHHhcc-hhHHHHHHHHHHHHHHc
Q 013085 103 LSKI-----VDILVQLLAAE-EIVERDAVHKALMSLLR 134 (449)
Q Consensus 103 v~ki-----aDVL~QLLqtd-d~~E~~~V~~sL~~ll~ 134 (449)
-..| ...|++||.+. +..-...+..+|..|-.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 4444 45789999874 43335555666665544
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=75.15 E-value=12 Score=37.74 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCccchhh-----HHHHHHHHHhcchhHHHHHHHHHHHHHHccchh------
Q 013085 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK------ 138 (449)
Q Consensus 70 i~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k------ 138 (449)
|..+..+...+|+.+|..|...|-.+|.+++..-.. ....|+++|.++++.-....-.+|..+..-++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456667777778888888888888888777543323 345789999988877777777888887764332
Q ss_pred --hHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 013085 139 --ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (449)
Q Consensus 139 --~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl 168 (449)
|.+..|...+. .++++.+|+.+..-|
T Consensus 84 ~~G~i~~Lv~lL~----~~~~~~~~~~a~~aL 111 (457)
T 1xm9_A 84 RQNGIREAVSLLR----RTGNAEIQKQLTGLL 111 (457)
T ss_dssp HTTCHHHHHHHHT----TCCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHh----hCCCHHHHHHHHHHH
Confidence 22334444442 134566777665444
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.93 E-value=2.4 Score=43.94 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHhhhhhH---hhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccccccCccchhhH-----HHHHHHH
Q 013085 47 AKQLAAQLIPR---FFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQL 113 (449)
Q Consensus 47 ~K~LaAqfI~k---ffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki-----aDVL~QL 113 (449)
+++-|+..|.. |...-|+-... +|-.++.|..+.+..|+++|...|..+|..+++....+ ...|++|
T Consensus 350 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 55555554433 22245554333 45567788888888888888888888887777776655 3467888
Q ss_pred HhcchhHHHHHHHHHHHHHHccch
Q 013085 114 LAAEEIVERDAVHKALMSLLRQDV 137 (449)
Q Consensus 114 Lqtdd~~E~~~V~~sL~~ll~~d~ 137 (449)
|++.++.-...+-.+|..+...+|
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCH
Confidence 887776666777777777776554
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.36 E-value=23 Score=33.01 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=77.0
Q ss_pred CCHHHHHHHhhhhhHhhccCc----------cchHHHHHHhhhh-hcccchhHHHHHhhccccccccCccchhhHHHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFFP----------DLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP----------~L~e~Ai~a~lDL-cEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~ 111 (449)
....+-..|.+.+..|.+.+. ......+..+++= +-|....+|..|+..+-.++... .....+.+.+.
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~ 145 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVI 145 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 445555566666666655432 2334445556653 46777888888888777766432 22345666677
Q ss_pred HHHhcchhHHHHHHHHHHHHHHc------cchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccch
Q 013085 112 QLLAAEEIVERDAVHKALMSLLR------QDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK 176 (449)
Q Consensus 112 QLLqtdd~~E~~~V~~sL~~ll~------~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~ 176 (449)
..|+.-.|.-+...-+.|..++. .+|+..+..++..+... -...+..||+-+++.+.+=.+-++
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhC
Confidence 77777777666655555555554 24565555555443210 015677899999998875443343
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=69.81 E-value=15 Score=36.36 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=27.7
Q ss_pred HHHHHhhhhhcccch----hHHHHHhhccccccc---cCccchhhHH-----HHHHHHHhcchhH
Q 013085 68 RAVDAHLDLIEEEEL----GVRVQAIRGLPLFCK---DTPEYLSKIV-----DILVQLLAAEEIV 120 (449)
Q Consensus 68 ~Ai~a~lDLcEDed~----~IR~qAik~Lp~lck---~~~e~v~kia-----DVL~QLLqtdd~~ 120 (449)
-|+..+..|..+.+. .|+..|...|..+|. +++++...+. ..|++||++.+..
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChH
Confidence 345555555544332 366666666666554 4555544432 3466666655543
No 89
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=67.51 E-value=14 Score=38.31 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=53.4
Q ss_pred HhhhhhHhhccCccchH-----HHHHHhhhhhc-----------ccchhHHHHHhhccccccccCccchhh------HHH
Q 013085 51 AAQLIPRFFKFFPDLSS-----RAVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLSK------IVD 108 (449)
Q Consensus 51 aAqfI~kffk~FP~L~e-----~Ai~a~lDLcE-----------Ded~~IR~qAik~Lp~lck~~~e~v~k------iaD 108 (449)
|+..|.+. ...|+.++ -++..++.|.. ..++.+|..|...|-.+|.++++.-.. ...
T Consensus 168 Av~aL~nl-s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 168 AVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHH-TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHh-cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 44445444 33354443 35566666653 245678999999999999887544222 256
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHc
Q 013085 109 ILVQLLAAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 109 VL~QLLqtdd~~E~~~V~~sL~~ll~ 134 (449)
.|++||.++++.-...+-.+|..+-.
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~ 272 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSW 272 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88999998877666666667666644
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=66.89 E-value=57 Score=37.08 Aligned_cols=291 Identities=14% Similarity=0.197 Sum_probs=142.3
Q ss_pred HHHHHhhhhhcc-----cchhHHH---HHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh
Q 013085 68 RAVDAHLDLIEE-----EELGVRV---QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (449)
Q Consensus 68 ~Ai~a~lDLcED-----ed~~IR~---qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~ 139 (449)
++|.-++.||++ ....||. +.+...+.+.+.+|++++.+...|.+-|..+.+.-..++-.|++.+-.. -+.
T Consensus 495 ~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~-c~~ 573 (1023)
T 4hat_C 495 TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK-CKY 573 (1023)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HTH
T ss_pred HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHH
Confidence 455567788873 4444552 5567778888888888888877777777666666666666777776642 222
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHH-HHHHHHHHHhccc
Q 013085 140 SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLKSLSL 218 (449)
Q Consensus 140 tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~E-F~l~m~lL~~l~~ 218 (449)
.+.+ . .+++.+.-=+.++.++..-... + +.+....+.+.|-.+++.++.++ -..+++.|-..
T Consensus 574 ~l~~----~----~~~e~~p~~~~il~~l~~~~~~-----l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~-- 636 (1023)
T 4hat_C 574 HFVI----Q----QPRESEPFIQTIIRDIQKTTAD-----L--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL-- 636 (1023)
T ss_dssp HHHS----C----CTTCSSCHHHHHHHTHHHHHTT-----S--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH--
T ss_pred Hhhc----c----CCCCCchhHHHHHHHHHHHHHh-----C--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh--
Confidence 2211 0 0000000111122222211111 1 22344566777777777776555 33344333322
Q ss_pred cCCCCchhHHHHHHHHHHhhhcccCCCC-CCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCC--------
Q 013085 219 FGEKAPTERMKELIGIIEGQADLDAQFN-VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD-------- 289 (449)
Q Consensus 219 ~~~~~p~~~~qeLv~~i~eqa~Ld~~f~-~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~-------- 289 (449)
+..+-+++++ ++. ++.. -.|++.++++..-++.--...+ .-++.|+.|+. .|+|.+-
T Consensus 637 -----~~~~~~~l~~----~~~--~~~~~~~d~~~~~~l~~il~~~~~v~~--~lg~~f~~~~~-~i~~~~l~~y~~~s~ 702 (1023)
T 4hat_C 637 -----PNMAWDTIVE----QST--ANPTLLLDSETVKIIANIIKTNVAVCT--SMGADFYPQLG-HIYYNMLQLYRAVSS 702 (1023)
T ss_dssp -----HHHHHHHHHH----HHH--HCTTGGGCHHHHHHHHHHHHHHHHHHH--HHGGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH----HHh--cCchhhcCHHHHHHHHHHHHHHHHHHH--HhcHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1122344443 221 1111 2366777777776663211111 12344544432 2333111
Q ss_pred --------------CCCh-----hhhHHHHHHHHhhCCCC-Chhh-HhhhhHHHHHHHHh-hCCCCCCCCCCcchHHHHH
Q 013085 290 --------------KLPE-----ERKLDLLKALAEISPYT-TPQD-SRQILPSVAVLLKK-YMPLRKTGGEEMNFTYVEC 347 (449)
Q Consensus 290 --------------~L~e-----~~kL~lLK~lAE~s~~~-~~~d-a~~~l~~i~~~L~~-ymP~~~~~~~~l~fs~VEc 347 (449)
+-|. ..|-++||++--....+ +.+. +..+++++++.++. |...+|...+ =|
T Consensus 703 ~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~-------~~ 775 (1023)
T 4hat_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD-------AE 775 (1023)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCC-------HH
T ss_pred HHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhcc-------HH
Confidence 1111 22335556544443333 3333 67788888776554 7666553111 25
Q ss_pred HHHHHHhhhhcCCcccc--------ccc--cceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHH
Q 013085 348 LLYTFHHLAHKAPNATN--------SLC--GYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLT 402 (449)
Q Consensus 348 LLyafH~L~~k~P~~l~--------~lc--g~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~ 402 (449)
.||.+..+..|..+... .++ -...+++ +-+|+++...+|-.=|+.+...|
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-----~~~~~Pe~r~~ff~ll~~~~~~~ 835 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-----DFTEYPEHRVEFYKLLKVINEKS 835 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----CSSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-----ccccChHHHHHHHHHHHHHHHHC
Confidence 67777777666654321 111 1233332 12466787777766555544433
No 91
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=65.86 E-value=17 Score=34.25 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHHhhhhhcccch--hHHHHHhhccccccccCccchhhHH-----HHHHHHHhcchhHHHHHHHHHHHHHHcc
Q 013085 70 VDAHLDLIEEEEL--GVRVQAIRGLPLFCKDTPEYLSKIV-----DILVQLLAAEEIVERDAVHKALMSLLRQ 135 (449)
Q Consensus 70 i~a~lDLcEDed~--~IR~qAik~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~ll~~ 135 (449)
|..+..+...+|+ +++..|...|-.+|.+++++-..|+ -.|++||.++++.-....-.+|..+-.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4455666666666 8888888888889987776655543 4689999988776666666677666543
No 92
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.62 E-value=8 Score=44.07 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=73.9
Q ss_pred cCHHhHHHHHHHc--cCCHHHHHHHhhhhhHh-hccCccchHHHHHHhhh-hhcccchhHHHHHhhccccccccCccchh
Q 013085 29 QNVKDYEGIIEAA--KTSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (449)
Q Consensus 29 ~~~~~y~~Il~~~--kg~~k~K~LaAqfI~kf-fk~FP~L~e~Ai~a~lD-LcEDed~~IR~qAik~Lp~lck~~~e~v~ 104 (449)
.+..+-+.+|.-. ..+..++|-|.--|..= +.. |+ ++..+++ |.++.|+.||..|.-+|-.+|-+|| -.
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~ 646 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQ 646 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cH
Confidence 4566666666532 25667788777666642 232 33 4555555 5678888899999999999998887 37
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhh---HHHHHHHhh
Q 013085 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA---SLTALFKHI 148 (449)
Q Consensus 105 kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~---tL~~lf~qI 148 (449)
++.|+|..|+...+..-+...--||-.+....+.+ -+..+..|+
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 88888888887555555555666666666655544 345444443
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=61.96 E-value=29 Score=34.87 Aligned_cols=128 Identities=9% Similarity=0.071 Sum_probs=77.0
Q ss_pred ccCccchH-HHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchh
Q 013085 60 KFFPDLSS-RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (449)
Q Consensus 60 k~FP~L~e-~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k 138 (449)
.+||.+.- ..+-.+..|.--.|..+|+=++=.+-.+++...+-+ =++--|.+=++..++--+...=.+|..+..-+--
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~ 137 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML 137 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH
Confidence 57887653 566667788888888888888888888777754444 6777777777777765544433444444333223
Q ss_pred hHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccc
Q 013085 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLED 200 (449)
Q Consensus 139 ~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~d 200 (449)
..+..-+.+... +...-||..++=-. .|+.+..+++.. ..++.+...+.|
T Consensus 138 ~~l~~~lk~~L~----d~~pyVRk~A~l~~-~kL~~~~pe~v~-------~~~~~l~~ll~d 187 (355)
T 3tjz_B 138 QAIERYMKQAIV----DKVPSVSSSALVSS-LHLLKCSFDVVK-------RWVNEAQEAASS 187 (355)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHHH-HHHTTTCHHHHH-------TTHHHHHHHTTC
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHHH-HHHhccCHHHHH-------HHHHHHHHHhcC
Confidence 333333334331 44566776655332 267777777751 234455555555
No 94
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=61.16 E-value=3.8 Score=39.04 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=31.1
Q ss_pred hhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHH
Q 013085 54 LIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (449)
Q Consensus 54 fI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~ 126 (449)
=|-+||..-|++- -.|+.|+++.||.+|.+.||. ++|.+|++.+++..+..+=
T Consensus 43 ri~~~~~~~p~l~-------~~ll~d~~~~VR~~AA~~l~~-------------~~l~~L~~D~~~~VR~~aA 95 (244)
T 1lrv_A 43 QIDRFFRNNPHLA-------VQYLADPFWERRAIAVRYSPV-------------EALTPLIRDSDEVVRRAVA 95 (244)
T ss_dssp HHHHHHHHCGGGG-------GGGTTCSSHHHHHHHHTTSCG-------------GGGGGGTTCSSHHHHHHHH
T ss_pred HHHHHHcCCHHHH-------HHHhcCCCHHHHHHHHHhCCH-------------HHHHHHccCcCHHHHHHHH
Confidence 3566776666652 245677777777777776641 2355566655555544433
No 95
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=60.35 E-value=1.2e+02 Score=28.94 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=74.3
Q ss_pred hHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHH-HHHHHHHHHHHccchh---hHH
Q 013085 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDVK---ASL 141 (449)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~-~~V~~sL~~ll~~d~k---~tL 141 (449)
-++-+++++.+.+|+==.||++|++-|..+.+.-|+...-..+=|--||..++..-+ ..+-+++=++-+..|. .+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 356688899999999888999999999999999999998888888889887777776 6788888888888774 455
Q ss_pred HHHHHhhccCCCCCChHHHHH
Q 013085 142 TALFKHIGSVDEPSTDEFIRE 162 (449)
Q Consensus 142 ~~lf~qI~~~~~~~~ee~~Re 162 (449)
..+|-... -|++.+|-
T Consensus 110 p~lfanyr-----igd~kikI 125 (253)
T 2db0_A 110 PVLFANYR-----IGDEKTKI 125 (253)
T ss_dssp HHHHHHSC-----CCSHHHHH
T ss_pred HHHHHHHh-----cCCcccee
Confidence 66776666 55665553
No 96
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=58.98 E-value=23 Score=36.12 Aligned_cols=211 Identities=8% Similarity=0.102 Sum_probs=106.4
Q ss_pred ccccccccCccchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH------HHccchhhHH--HHHHHhhccCCCCCChHHHH
Q 013085 91 GLPLFCKDTPEYLSKIVDILVQLLAAE-EIVERDAVHKALMS------LLRQDVKASL--TALFKHIGSVDEPSTDEFIR 161 (449)
Q Consensus 91 ~Lp~lck~~~e~v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~------ll~~d~k~tL--~~lf~qI~~~~~~~~ee~~R 161 (449)
.+..+|+| ++-+|+ |-++|... ++.|++.|-+.+.. -|-.|+=|.. .-+|...-.. ...+=-+.|
T Consensus 30 ~i~~la~D--q~GsR~---lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~-~~~~~~~q~ 103 (412)
T 3k62_A 30 DLMKFAVD--KTGCQF---LEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLAT-NDDGYTKRQ 103 (412)
T ss_dssp CHHHHHTS--HHHHHH---HHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHC-CSTTHHHHH
T ss_pred CcHHHhcC--ChhHHH---HHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcc-cccccHHHH
Confidence 45678887 566775 77888876 77888877666532 2445665543 5666543200 000000567
Q ss_pred HHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHH--H--hccccCCCCchhHHHHHHHHHHh
Q 013085 162 EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFL--K--SLSLFGEKAPTERMKELIGIIEG 237 (449)
Q Consensus 162 e~~l~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL--~--~l~~~~~~~p~~~~qeLv~~i~e 237 (449)
..+++.+..++..+..+--+ ...+.|+++-.+.++...+++-| . -+.++.. +-| .-.++-+.+
T Consensus 104 ~~i~~~l~g~v~~L~~~~~G---------srvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D--~~G--NhVIQK~Le 170 (412)
T 3k62_A 104 EKLKNFISSQMTDMCLDKFA---------CRVIQSSLQNMDLSLACKLVQALPRDARLIAICVD--QNA--NHVIQKVVA 170 (412)
T ss_dssp HHHHHHHHHTHHHHHHSTTH---------HHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHC--TTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChhh---------hHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhC--ccc--cHHHHHHHH
Confidence 88888888877666433321 23334444445666665554432 0 0112211 112 122222222
Q ss_pred hhcccCCCCCCChhhHHHHHHHHHH--hhhhhccCCChhhHHHHHHHhhccC-----CCCCChhhhHHHHHH-HHhhCCC
Q 013085 238 QADLDAQFNVSDADHIDRLISCLYM--ALPFFLRGASGSKFLNYLNKHIIPV-----FDKLPEERKLDLLKA-LAEISPY 309 (449)
Q Consensus 238 qa~Ld~~f~~sD~d~vdrli~Cl~~--AlP~fS~~v~Stkfv~y~~~~VlP~-----l~~L~e~~kL~lLK~-lAE~s~~ 309 (449)
. ..++..+.++..+.. -+--.+....+++-++-+.++.-+. +...+++.|..+++. +.++.++
T Consensus 171 ~---------~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~ 241 (412)
T 3k62_A 171 V---------IPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNR 241 (412)
T ss_dssp H---------SCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred h---------CCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 124555555554431 1112344555555555555544321 111123566666654 5677777
Q ss_pred CChhhHhhhhHHHHHHHHhh
Q 013085 310 TTPQDSRQILPSVAVLLKKY 329 (449)
Q Consensus 310 ~~~~da~~~l~~i~~~L~~y 329 (449)
|....--+.-+.|.+.+++.
T Consensus 242 ~~~L~~dq~GNyViQ~iL~~ 261 (412)
T 3k62_A 242 CQELATNEYANYIIQHIVSN 261 (412)
T ss_dssp HHHHHHSTTTHHHHHHHHHC
T ss_pred HHHHhhCccccHHHHHHHhc
Confidence 65544455666777777665
No 97
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=57.93 E-value=15 Score=39.31 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=69.5
Q ss_pred chHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHH-----HHHHHHHhcchhHHHHHHHHHHHHHHcc---c
Q 013085 65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV-----DILVQLLAAEEIVERDAVHKALMSLLRQ---D 136 (449)
Q Consensus 65 L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~ll~~---d 136 (449)
..+.+|..++.+....|..++.+|...|-.+|..++++...|+ -.|++||.++++.-...+-.+|..|-.. +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3456788888888888999999999999999988777655554 4689999998887777888888888763 2
Q ss_pred hh------hHHHHHHHhhccCCCCCChHHHHHHHH
Q 013085 137 VK------ASLTALFKHIGSVDEPSTDEFIREKVL 165 (449)
Q Consensus 137 ~k------~tL~~lf~qI~~~~~~~~ee~~Re~~l 165 (449)
.| |.+..|...+.+ ..+..+++.+.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s----~~~~~~~e~aa 155 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRK----ARDMDLTEVIT 155 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHH----CCSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC----CCCHHHHHHHH
Confidence 22 344556655552 23455666543
No 98
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=55.30 E-value=2.1e+02 Score=30.29 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=69.4
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHH
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaD 108 (449)
.++++-.+++... .+.++.+=|=.-||.+-|+ +.-.+..|.+.-|.--||+.-+-..=+.|..+-|-+|.- -+.-
T Consensus 63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--tl~~ 138 (507)
T 3u0r_A 63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--TLGG 138 (507)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--HHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--HHHH
Confidence 4577889999999 8899999999999999999 888899999999999888877777777888888776532 2455
Q ss_pred HHHHHHhcch
Q 013085 109 ILVQLLAAEE 118 (449)
Q Consensus 109 VL~QLLqtdd 118 (449)
++.|++++|+
T Consensus 139 lf~~i~~~~e 148 (507)
T 3u0r_A 139 LFSQILQGED 148 (507)
T ss_dssp HHHHHHHSCH
T ss_pred HHHHHcccch
Confidence 6788888765
No 99
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=55.22 E-value=2.7e+02 Score=31.52 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=72.8
Q ss_pred cCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccc----hhHHHHHhhcccc----cccc--
Q 013085 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE----LGVRVQAIRGLPL----FCKD-- 98 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed----~~IR~qAik~Lp~----lck~-- 98 (449)
...++++.|.+..+...-...-|+|.+.- .-+.+.-..+.++.+.+||+.+. +.+|..|+=++-. .|.+
T Consensus 353 GT~~a~~~i~~~i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 353 ATSEALLFLKRTLASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp CSHHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455555555444211111226666653 33455567889999999999864 4467666655532 3444
Q ss_pred --CccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhh
Q 013085 99 --TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (449)
Q Consensus 99 --~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI 148 (449)
.++.+..+++.|.+.+.+.+..|..+.=++|-.+=. -.++..|-..|
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p~~l~~l~~~l 480 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---PNSIKKIQRFL 480 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---GGGHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---hhHHHHHHHhh
Confidence 346799999999999988887777777777766654 24566555444
No 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=53.22 E-value=64 Score=36.80 Aligned_cols=127 Identities=15% Similarity=0.065 Sum_probs=77.2
Q ss_pred HHhHHHHHHHcc--CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhc-ccchhHHHHHhhccccccccCccchhhHH
Q 013085 31 VKDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (449)
Q Consensus 31 ~~~y~~Il~~~k--g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcE-Ded~~IR~qAik~Lp~lck~~~e~v~kia 107 (449)
.+....++...+ .++-++.-|+--+.== +--.=...||..++..|- |.+..||..|+-+|-.++-++|+.++|+.
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglA--yaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALA--YAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 344444544433 4555555544333311 122333688998988875 55678999999999999888888877765
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHH
Q 013085 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 108 DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~ 166 (449)
+ .|+++.++.-+-.+-.||=-+---+|....-.+++.+.. ..++.||.-++.
T Consensus 618 ~---~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~----D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 618 Q---LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK----DPVDFVRQAAMI 669 (963)
T ss_dssp T---TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred H---HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc----CCCHHHHHHHHH
Confidence 4 455688887777777776555443443222223333331 456778876553
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=48.85 E-value=18 Score=34.78 Aligned_cols=74 Identities=20% Similarity=0.145 Sum_probs=56.1
Q ss_pred hHHHHHHHcc-CCHHHHHHHhhhhhHhhcc--CccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhH
Q 013085 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF--FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI 106 (449)
Q Consensus 33 ~y~~Il~~~k-g~~k~K~LaAqfI~kffk~--FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~ki 106 (449)
....+..-++ .+.-++|+|+.....|-+. |-.--+.++-.+-.|..|++.-||+.-=-.|-+++|.+|++|...
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 3455666666 8899999999998543333 223334567777779999999999998899999999999988754
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=47.96 E-value=1e+02 Score=29.73 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH---HHHHHHHHccchhhHH---
Q 013085 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV---HKALMSLLRQDVKASL--- 141 (449)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V---~~sL~~ll~~d~k~tL--- 141 (449)
.-+=++++=+.|.-..||.++..-|-.+|.-.| -+++.+.|..-+.+-.+.-+.-+ =.++++.+-+.|...+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~ 209 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVE 209 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 345567788888888898887776666665333 46788888887777665544433 3344444555567777
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 142 TALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 142 ~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
..+..++. ..|..||+-+++-+.
T Consensus 210 ~~ia~ll~-----D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 210 KTVAPFVG-----DKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHGGGGG-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 77777776 566789998888775
No 103
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=47.12 E-value=33 Score=30.34 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=30.8
Q ss_pred cChhhhHHHHHHH-------HHhHHHHHHHHHHHHHHHHhh
Q 013085 382 EDFSDCYKDFTER-------LTTVEDLTRATMKKLTQGLAD 415 (449)
Q Consensus 382 ed~~~~~kdF~~R-------Lqy~~~~~q~yikkL~~~l~~ 415 (449)
+.+.+++.||-.| |.||.+|.|.+=|.+-+.|.+
T Consensus 61 ~~~~e~l~~Faer~VqlGwpL~~lT~GL~~F~k~vy~~m~~ 101 (136)
T 2bnl_A 61 NAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMND 101 (136)
T ss_dssp TTTHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999 899999999999999999964
No 104
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=46.75 E-value=1.9e+02 Score=32.15 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=134.3
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccc----------cCccchhhHHHHHHHHHhcc--------hh----------
Q 013085 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCK----------DTPEYLSKIVDILVQLLAAE--------EI---------- 119 (449)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qAik~Lp~lck----------~~~e~v~kiaDVL~QLLqtd--------d~---------- 119 (449)
..++.++.....+|..|+..|+.=+..+|. -.+.+++++.+++.+.+.-+ |+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 456666666777788888888865555544 12245666666666655311 11
Q ss_pred ----HHHHHHHHHHHHHHccchhhHHHHHHHhhccC-CCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHH-HHHH
Q 013085 120 ----VERDAVHKALMSLLRQDVKASLTALFKHIGSV-DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH-ITDL 193 (449)
Q Consensus 120 ----~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~-~~~~~ee~~Re~~l~Fl~~kl~~l~~e~l~~~~E~E~~-i~~~ 193 (449)
..+..+...|..+....+..++..++..+... ..++.+-..||-++--+. .+.+... ++.+.. +...
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~alg----sia~~~~---~~~e~~~l~~v 496 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIG----SISGTMS---EDTEKRFVVTV 496 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH----HTTTSSC---HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HHhcccC---chhhHHHHHHH
Confidence 12346778888888888888777766555321 001122245665544333 2221111 122222 2222
Q ss_pred HHhhcc--cc-ch-HHH---H-HHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChh-------hHHHHHH
Q 013085 194 IKKSLE--DV-TG-AEF---R-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDAD-------HIDRLIS 258 (449)
Q Consensus 194 ikK~L~--dV-t~-~EF---~-l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d-------~vdrli~ 258 (449)
+.-.+. +. .+ ..- . .+|.+++....+-..+|+. ...+++.+.+- |.. .++. .+.+|..
T Consensus 497 ~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l~~vl~~ll~~--l~~----~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 497 IKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEF--MHE----THEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-HHHHHHHHHHH--TTS----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH--hcC----CCHHHHHHHHHHHHHHHH
Confidence 222211 10 00 111 1 2445555443331122322 34455555542 321 1221 2334433
Q ss_pred HHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCCh-hh----HhhhhHHHHHHHHhhCCCC
Q 013085 259 CLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP-QD----SRQILPSVAVLLKKYMPLR 333 (449)
Q Consensus 259 Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~-~d----a~~~l~~i~~~L~~ymP~~ 333 (449)
-.+..+-- .......+|+.-+.+++...+++++.+....+.+.++.++...+. +. ...+++.+.+.+...+-..
T Consensus 570 ~~~~~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 648 (1049)
T 3m1i_C 570 KCKYHFVI-QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQS 648 (1049)
T ss_dssp HHTHHHHS-CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211100 011112378888888888888888877888899999888776663 22 3445555555555444110
Q ss_pred ---CCC--CCC---cchHHHHHHHHHHHhhhhc
Q 013085 334 ---KTG--GEE---MNFTYVECLLYTFHHLAHK 358 (449)
Q Consensus 334 ---~~~--~~~---l~fs~VEcLLyafH~L~~k 358 (449)
+.. +++ --...++|+-.+...+|..
T Consensus 649 ~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~ 681 (1049)
T 3m1i_C 649 TANPTLLLDSETVKIIANIIKTNVAVCTSMGAD 681 (1049)
T ss_dssp HHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000 010 1145566666666666643
No 105
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=44.05 E-value=82 Score=35.80 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=46.4
Q ss_pred hhHHHHHhhccccccccCccchhhHHHHHHHHHh-cchhHHHHHHHHHHHHHHccch-hhHHHHHHHhhc
Q 013085 82 LGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA-AEEIVERDAVHKALMSLLRQDV-KASLTALFKHIG 149 (449)
Q Consensus 82 ~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~ll~~d~-k~tL~~lf~qI~ 149 (449)
..||++||.+|..+.+..| .++-+||.|++. ..++.|+-++ |+..+++.+| -..|..|...+.
T Consensus 492 ~rvr~aAi~ALr~~~~~~p---~~v~~il~~i~~n~~e~~EvRia--A~~~Lm~t~P~~~~l~~ia~~l~ 556 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDP---RKVQEIVLPIFLNVAIKSELRIR--SCIVFFESKPSVALVSMVAVRLR 556 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCH---HHHHHHHHHHHHCTTSCHHHHHH--HHHHHHHTCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhhch---HHHHHHHHHHhcCCCCChHHHHH--HHHHHHHHCcCHHHHHHHHHHHh
Confidence 3578889999999987554 567778999994 5566665443 7888888777 556677777765
No 106
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=42.86 E-value=2.7e+02 Score=27.92 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred HHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhcccccccc---------
Q 013085 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKD--------- 98 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~lck~--------- 98 (449)
=+.|++... ++.+++|-|=.-+.++|..=++++.+ .++++++.+++.+-.+..-+.++|-++=-.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 445666555 77888888888888878777777665 578999999999999999888888877422
Q ss_pred CccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Q 013085 99 TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 99 ~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~ 134 (449)
+|+.|.+| +.++.+ ....+++.||.=|+.
T Consensus 200 ~~~fI~~l----yslv~s---~~~~V~k~AL~LL~v 228 (339)
T 3dad_A 200 HSDTIQWL----YTLCAS---LSRLVVKTALKLLLV 228 (339)
T ss_dssp CHHHHHHH----HHGGGC---SCHHHHHHHHHHHHH
T ss_pred CHHHHHHH----HHHHcC---ccHHHHHHHHHHHHH
Confidence 34444444 456664 457777777655543
No 107
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=42.13 E-value=91 Score=30.41 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=78.0
Q ss_pred cCHHhHHHHHHH----cc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccc--cCcc
Q 013085 29 QNVKDYEGIIEA----AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK--DTPE 101 (449)
Q Consensus 29 ~~~~~y~~Il~~----~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck--~~~e 101 (449)
-+.+.|..++.+ .| +++-.---||....+- .=-++....+|.+..|.+..|..+...|++.|-.+.- ++|+
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 355666665553 33 5566666778877777 5667789999999999999999999999998877764 6679
Q ss_pred chhhHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 013085 102 YLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (449)
Q Consensus 102 ~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll 133 (449)
++..|.|=+.-||+++|+.=++.+=-+|-.++
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876555444444333
No 108
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=41.84 E-value=33 Score=28.61 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=30.4
Q ss_pred ChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 013085 383 DFSDCYKDFTERLTTVEDLTRATMKKLTQGLAD 415 (449)
Q Consensus 383 d~~~~~kdF~~RLqy~~~~~q~yikkL~~~l~~ 415 (449)
.|++-++++..+|+-|...++.||.-|++-|+-
T Consensus 49 kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 578899999999999999999999999998874
No 109
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=40.48 E-value=36 Score=37.49 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhhhHhhccC-------ccchHHH----HHHhhhhhcccchhHHHHHhhcccccccc-CccchhhHHHHH
Q 013085 43 TSLKAKQLAAQLIPRFFKFF-------PDLSSRA----VDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEYLSKIVDIL 110 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~F-------P~L~e~A----i~a~lDLcEDed~~IR~qAik~Lp~lck~-~~e~v~kiaDVL 110 (449)
.+..+|.+||..+.++.++. +.+.++. =+.++...-+++..||.++-..+-.+++. -|+.-+-+.+.|
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L 128 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDL 128 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHH
Confidence 56789999998777665432 1233322 34556666667789999887777776653 333336677888
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHc
Q 013085 111 VQLLAAEEIVERDAVHKALMSLLR 134 (449)
Q Consensus 111 ~QLLqtdd~~E~~~V~~sL~~ll~ 134 (449)
.|++++.++.-+..+=.+|.++++
T Consensus 129 ~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 129 ASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 899988877665555555556655
No 110
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=40.02 E-value=2.2e+02 Score=26.07 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=41.4
Q ss_pred CChhhHHHHHHHHHHhhhhh-ccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCCh
Q 013085 248 SDADHIDRLISCLYMALPFF-LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP 312 (449)
Q Consensus 248 sD~d~vdrli~Cl~~AlP~f-S~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~ 312 (449)
.+|...--.+.++..++.-| .+.++...++..+++.+.+.+++=..+.|-.-.+++.++-.+.|.
T Consensus 151 Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 151 KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 33444444455555555444 345566677777777777777777778888888888888877773
No 111
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=39.92 E-value=34 Score=34.17 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=67.0
Q ss_pred cCHHhHHHHHHHccCCHHHHHHHhhhhhH-hhccCccchHHHHHHhhhhhcccchhH-----------------------
Q 013085 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLSSRAVDAHLDLIEEEELGV----------------------- 84 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg~~k~K~LaAqfI~k-ffk~FP~L~e~Ai~a~lDLcEDed~~I----------------------- 84 (449)
..-+--+.+|..+=|..+++.+-..+.+. -.+-|..|+.---..+.++..+|-+++
T Consensus 76 ~gg~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~ 155 (329)
T 3hjl_A 76 KKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEE 155 (329)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHH
T ss_pred CchHHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHH
Confidence 34434478999999999988777665543 223455555555567788888888873
Q ss_pred -HHHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHH--HHHHHHHHccchhhHHHHHHHhhc
Q 013085 85 -RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV--HKALMSLLRQDVKASLTALFKHIG 149 (449)
Q Consensus 85 -R~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V--~~sL~~ll~~d~k~tL~~lf~qI~ 149 (449)
|..-++.+-.+-.=+|+-+..|.++|-+.|.+-.......+ .+.+..++..=++++=..++..|.
T Consensus 156 ~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~ 223 (329)
T 3hjl_A 156 LKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIG 223 (329)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHH
Confidence 44444444445555555666666666554432111110000 223344444444455555555554
No 112
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=37.79 E-value=7.1 Score=34.81 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhh------------hcccCCCCCCChhh
Q 013085 185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ------------ADLDAQFNVSDADH 252 (449)
Q Consensus 185 E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eq------------a~Ld~~f~~sD~d~ 252 (449)
|..++|=.+...-+.+.|++|-..+.++.++-..|++ -+++++.+-+. ..+..-++...|++
T Consensus 11 e~ke~iP~ev~~f~~~Lt~eeK~~Lkev~kn~~~f~~------e~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Pea 84 (140)
T 2w9y_A 11 CVKNFFPTEQLEFSSSITADEKPVLHEVFQKHSCFSQ------CGEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAA 84 (140)
T ss_dssp HHHTTCCHHHHHHHHHCCTTTHHHHHHHHTTCCC----------TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHCcHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3334444455555667788888888888888777742 13344433332 12445566777887
Q ss_pred HHHHHHHHHHhhhhhcc---CCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHH
Q 013085 253 IDRLISCLYMALPFFLR---GASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALA 304 (449)
Q Consensus 253 vdrli~Cl~~AlP~fS~---~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lA 304 (449)
-.-+-.++.+.+-.++. |...+.-- .+.++..+..|+++.|-+|.+.|-
T Consensus 85 k~Fv~kli~~~r~l~~~~~~G~k~~~~~---lK~~~~~ykaLS~~aK~dL~k~FP 136 (140)
T 2w9y_A 85 VEYAKKLIHMVTTTLCSLTVGKPIDDAD---AKRLHQEFQSLSSEDQAALRKNNP 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCTHH---HHHHHHHHHTSCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHcCCHHHHHHHHHhCc
Confidence 66555555565555544 22222111 344557777888888888777653
No 113
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=37.77 E-value=44 Score=32.31 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHHHHHcc-CCHHHHHH----HhhhhhHhhccCccchHHHH---HHhhhhhcccchhHHHHHhhcccccccc
Q 013085 34 YEGIIEAAK-TSLKAKQL----AAQLIPRFFKFFPDLSSRAV---DAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (449)
Q Consensus 34 y~~Il~~~k-g~~k~K~L----aAqfI~kffk~FP~L~e~Ai---~a~lDLcEDed~~IR~qAik~Lp~lck~ 98 (449)
+..+++|.+ .+.+++.= .+++|++|--. | ..++ -.+-.+.+|.|.+||-.|+..+..+.+.
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 556677777 55666643 46677777665 3 4578 8888889999999999999888887764
No 114
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=37.32 E-value=1.8e+02 Score=27.77 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhccccCC--CCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhh
Q 013085 188 RHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGE--KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALP 265 (449)
Q Consensus 188 ~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~--~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP 265 (449)
+.+...++-+|..+|.+-|..+.+=|..+.+-.. .+ ..+.+.++++|.++|=.+..| .....+|..++..-+|
T Consensus 34 e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~-~~~l~~vi~~If~kA~~ep~f----s~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 34 DEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETN-GETLKAVIEQIFLKACDEPHW----SSMYAQLCGKVVKELN 108 (284)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSB-CHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCc-HHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHhcC
Confidence 3455566667777899999877543333322100 11 234678999999998776556 4667788888877765
Q ss_pred -hhcc----CC-ChhhHHHHHHHhhccCCC-----CCC--------------h---------hhhHHHHHHHHhhCCCCC
Q 013085 266 -FFLR----GA-SGSKFLNYLNKHIIPVFD-----KLP--------------E---------ERKLDLLKALAEISPYTT 311 (449)
Q Consensus 266 -~fS~----~v-~Stkfv~y~~~~VlP~l~-----~L~--------------e---------~~kL~lLK~lAE~s~~~~ 311 (449)
.+.. +. .++-|..++.+..--.|. +++ + .+-+-..+.++|+--+ +
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~-~ 187 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRL-N 187 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhc-c
Confidence 3321 12 233465666554322111 121 0 0234567888888433 1
Q ss_pred hhhHhhhhHHHHHHHHhhCCCCCCCCCCcchHHHHHHHHHHHhhhhcC
Q 013085 312 PQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKA 359 (449)
Q Consensus 312 ~~da~~~l~~i~~~L~~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~ 359 (449)
.. ...++-.+...|+.-....|+ + -.||||.-.+...|++.
T Consensus 188 ~l-~~~i~~~ci~~LL~~~~~~p~--e----~~iE~l~~lL~tvG~~L 228 (284)
T 2vso_E 188 LL-TGKMMFECFRRLMKDLTDSPS--E----ETLESVVELLNTVGEQF 228 (284)
T ss_dssp SS-CHHHHHHHHHHHHHHHHSCCC--H----HHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHhccCCCCCC--H----HHHHHHHHHHHHHHHHH
Confidence 11 122222233333321001111 1 26999999999999873
No 115
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=36.94 E-value=5.3e+02 Score=29.54 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=36.8
Q ss_pred CHHhHHHHHHHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcc-cchhHHHHHhhccccccc
Q 013085 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCK 97 (449)
Q Consensus 30 ~~~~y~~Il~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcED-ed~~IR~qAik~Lp~lck 97 (449)
+.+.+..++.+.- ++...|+-|-+++-+|- .=|+ |......+... .++.||-.|.--|-...+
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp~----aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHPD----AWTRVDTILEFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCSC----HHHHHTCC---CCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCch----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5667777777654 66777777777775544 3454 44444555433 467788777655554443
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=36.90 E-value=26 Score=34.24 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=94.5
Q ss_pred cccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHH---ccchhhH--HHHHHHhhccCCCCCChHHHHHHHHH
Q 013085 92 LPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL---RQDVKAS--LTALFKHIGSVDEPSTDEFIREKVLS 166 (449)
Q Consensus 92 Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll---~~d~k~t--L~~lf~qI~~~~~~~~ee~~Re~~l~ 166 (449)
+..+|+| .+-+|+ |-++|...++.|++.+=+.+...+ -.|+-|. +.-+|.. +.++.|..+++
T Consensus 28 i~~la~d--q~gsR~---lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~--------~~~~~~~~i~~ 94 (351)
T 3gvo_A 28 IVEFSQD--QHGSRF---IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF--------GSLDQKLALAT 94 (351)
T ss_dssp HHHHHTS--HHHHHH---HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH--------CCHHHHHHHHH
T ss_pred HHHHhcC--CcchHH---HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhh--------CCHHHHHHHHH
Confidence 6778887 567776 667787777888877766554332 2344332 2445542 34566777777
Q ss_pred HHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHh--ccccCCCCchhHHHHHHHHHHhhhcccCC
Q 013085 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS--LSLFGEKAPTERMKELIGIIEGQADLDAQ 244 (449)
Q Consensus 167 Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~--l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~ 244 (449)
-+..++..+..+--+ ...+.+.++..+.++...+++-+.. ..++. .+-| .-+++-+.+.
T Consensus 95 ~i~g~~~~l~~~~~G---------~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~--d~~G--n~ViQk~l~~------ 155 (351)
T 3gvo_A 95 RIRGHVLPLALQMYG---------CRVIQKALESISSDQQSEMVKELDGHVLKCVK--DQNG--NHVVQKCIEC------ 155 (351)
T ss_dssp HHTTCHHHHHTSTTH---------HHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHH--STTH--HHHHHHHHHH------
T ss_pred HHHhhHHHHhhCHHh---------HHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHH--hhhh--hHHHHHHHHh------
Confidence 676666555332221 1222233333344443332211000 00010 1112 2233333321
Q ss_pred CCCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHH
Q 013085 245 FNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAV 324 (449)
Q Consensus 245 f~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~ 324 (449)
..++..+.++..+..-+.-.+.+..+++.+.-+.+.. +++.+..+++. +.+++....--+.-+.|.+
T Consensus 156 ---~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~-------~~~~~~~ii~~---l~~~~~~L~~d~~Gn~ViQ 222 (351)
T 3gvo_A 156 ---VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC-------TAEQTLPILEE---LHQHTEQLVQDQYGNYVIQ 222 (351)
T ss_dssp ---SCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHS-------CHHHHHHHHHH---HHTTHHHHHTSTTHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHC-------CHHHHHHHHHH---HhhhHHhcCCCchHHHHHH
Confidence 1234444555544433444555666666666555542 33555555444 3344333333455667777
Q ss_pred HHHhhCC
Q 013085 325 LLKKYMP 331 (449)
Q Consensus 325 ~L~~ymP 331 (449)
.++++.+
T Consensus 223 ~~l~~~~ 229 (351)
T 3gvo_A 223 HVLEHGR 229 (351)
T ss_dssp HHHHHSC
T ss_pred HHHHhCc
Confidence 7777764
No 117
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=34.56 E-value=1.4e+02 Score=27.78 Aligned_cols=81 Identities=10% Similarity=-0.038 Sum_probs=58.8
Q ss_pred hhHhhccCccchHHHHHHhhhhhcccchhHHHHHhh----cccccc-cc-CccchhhHHHHHHHHHhcchhHHHHHHHHH
Q 013085 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIR----GLPLFC-KD-TPEYLSKIVDILVQLLAAEEIVERDAVHKA 128 (449)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik----~Lp~lc-k~-~~e~v~kiaDVL~QLLqtdd~~E~~~V~~s 128 (449)
.+..+++.|. +.+-+..+..|++.=+|+.||- =|-.+- |. +..++..+-++....+.+++.--..+|.++
T Consensus 99 ~~~l~~~~~~----~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~ 174 (235)
T 1t06_A 99 VAVTLSESNI----AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNF 174 (235)
T ss_dssp HHHHHTTSSS----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHhcCch----HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHH
Confidence 4444666665 5566788999999999999997 323221 21 335677788888888888888888888999
Q ss_pred HHHHHccchhh
Q 013085 129 LMSLLRQDVKA 139 (449)
Q Consensus 129 L~~ll~~d~k~ 139 (449)
|.++.+.||.-
T Consensus 175 Lr~~gk~~~~~ 185 (235)
T 1t06_A 175 LNTVAISYVPL 185 (235)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHhhCHHH
Confidence 98888877763
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=34.50 E-value=1.5e+02 Score=34.09 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=70.3
Q ss_pred HHHHHHHc---c-CCHHHHHHHhhhhh---HhhccCccchHHHHHHhhhhhcc------------cchhHHHHHhhcccc
Q 013085 34 YEGIIEAA---K-TSLKAKQLAAQLIP---RFFKFFPDLSSRAVDAHLDLIEE------------EELGVRVQAIRGLPL 94 (449)
Q Consensus 34 y~~Il~~~---k-g~~k~K~LaAqfI~---kffk~FP~L~e~Ai~a~lDLcED------------ed~~IR~qAik~Lp~ 94 (449)
...++... + .+++.+.-+-+.|. +||++.|++-...++.++..+.| ....||..|--.+-.
T Consensus 531 ~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 531 GIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 45566542 3 57877766666654 66777799999999999987766 344799999999999
Q ss_pred ccccCccchhhHHHH----HHHHHhcch---hHHHHHHHHHHHHH
Q 013085 95 FCKDTPEYLSKIVDI----LVQLLAAEE---IVERDAVHKALMSL 132 (449)
Q Consensus 95 lck~~~e~v~kiaDV----L~QLLqtdd---~~E~~~V~~sL~~l 132 (449)
+|++-++++.-..|. +.+++++.. ..|...+..++..+
T Consensus 611 L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 999998776444443 345565444 66777777777665
No 119
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=32.08 E-value=60 Score=35.48 Aligned_cols=115 Identities=24% Similarity=0.269 Sum_probs=70.8
Q ss_pred HHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhh-------HHHHHHHHHhcchhHH
Q 013085 49 QLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-------IVDILVQLLAAEEIVE 121 (449)
Q Consensus 49 ~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~k-------iaDVL~QLLqtdd~~E 121 (449)
.++.+|.--|-+ ..+.|..+++|.+.+|-.||..|++=|-.+|..+|+-+.+ =.-.|+.+|..+-..=
T Consensus 108 ~~~~~~~d~f~~-----~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 108 DLGSQFTEIFIK-----QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp CHHHHHHHHHHH-----STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred HHHHHHHHHHHc-----CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 344455444443 3578999999999999999999999999999999872221 2223455565443233
Q ss_pred HHHHHHHHHHHHccchh--------hHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 122 RDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 122 ~~~V~~sL~~ll~~d~k--------~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
++..---|+++-+.++. |.+..+|+=|... .+.+...+=++|+..|.
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E-g~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE-GNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc-CCCccchhHHHHHHHHH
Confidence 44444456666666665 6677777666521 11112245556665554
No 120
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=32.06 E-value=89 Score=23.67 Aligned_cols=41 Identities=32% Similarity=0.479 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHhhhcchh-hHHHHHHh
Q 013085 389 KDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDE-AKEKIVSL 435 (449)
Q Consensus 389 kdF~~RLqy~~~~~q~yikkL~~~l~~~~K~~~~~ktee-nk~kv~~~ 435 (449)
|.++-|+ -+|.+++-.|.+-+-- .+.+++|++| |+++|.+.
T Consensus 5 kryknr~--asrk~rakfkn~lqh~----r~vaaaks~en~rlr~l~k 46 (63)
T 2c9l_Y 5 KRYKNRV--AARKSRAKFKQLLQHY----REVAAAKSSENDRLRLLLK 46 (63)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHH----HHHHHhhcccchHHHHHHH
Confidence 4444444 4677777666554444 5789999988 78888877
No 121
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=31.80 E-value=1.4e+02 Score=32.96 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=15.9
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhcccc
Q 013085 188 RHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF 219 (449)
Q Consensus 188 ~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~ 219 (449)
..+-+.+... .|.|+ -..-+|++|..|=.+
T Consensus 337 ~iLWd~L~~L-DDLSA-STgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 337 EKCWKNIESE-ELISV-SKTSNLSLLTKIYRE 366 (800)
T ss_dssp HHHHHHHHTC-CSCCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-cccch-hhHHHHHHHHHHHcC
Confidence 3344444432 55443 345677777777554
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=29.92 E-value=24 Score=33.47 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHcc-CCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcc
Q 013085 39 EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE 117 (449)
Q Consensus 39 ~~~k-g~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtd 117 (449)
...+ .++.+++-++..++. +.+..|.+|+|..||..|+..||. +.|.+|++.+
T Consensus 153 ~l~~D~d~~VR~~aa~~l~~-------------~ll~~ll~D~d~~VR~aaa~~l~~-------------~~L~~Ll~D~ 206 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRLPE-------------ESLGLMTQDPEPEVRRIVASRLRG-------------DDLLELLHDP 206 (244)
T ss_dssp GTTTCSCHHHHHHHHHHSCG-------------GGGGGSTTCSSHHHHHHHHHHCCG-------------GGGGGGGGCS
T ss_pred HHHcCCCHHHHHHHHHcCCH-------------HHHHHHHcCCCHHHHHHHHHhCCH-------------HHHHHHHcCC
Confidence 3445 778888888886431 345578899999999999998742 4577888888
Q ss_pred hhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHH
Q 013085 118 EIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (449)
Q Consensus 118 d~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l 165 (449)
+..-+..+-.++- ...|.. +. ..+..||+.+.
T Consensus 207 d~~VR~~aa~~l~-------~~~L~~----L~-----D~~~~VR~aa~ 238 (244)
T 1lrv_A 207 DWTVRLAAVEHAS-------LEALRE----LD-----EPDPEVRLAIA 238 (244)
T ss_dssp SHHHHHHHHHHSC-------HHHHHH----CC-----CCCHHHHHHHH
T ss_pred CHHHHHHHHHcCC-------HHHHHH----cc-----CCCHHHHHHHH
Confidence 8888887777765 122222 21 55678887765
No 123
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=29.75 E-value=4.2e+02 Score=26.19 Aligned_cols=204 Identities=14% Similarity=0.142 Sum_probs=98.2
Q ss_pred ccccccccCccchhhHHHHHHHHHhcchhHH-HHHHHHHHH------HHHccchhhHH--HHHHHhhccCCCCCChHHHH
Q 013085 91 GLPLFCKDTPEYLSKIVDILVQLLAAEEIVE-RDAVHKALM------SLLRQDVKASL--TALFKHIGSVDEPSTDEFIR 161 (449)
Q Consensus 91 ~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E-~~~V~~sL~------~ll~~d~k~tL--~~lf~qI~~~~~~~~ee~~R 161 (449)
.+..+|+| +|=+|+ |-+.|....+.| ..+|-+.+. --|-.||-|.. .-+|.+ +.+..|
T Consensus 21 ~i~~~a~D--q~Gsr~---lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~--------~~~~~~ 87 (382)
T 3v71_A 21 QLIDFAID--PSGVKF---LEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVEL--------ATPAEQ 87 (382)
T ss_dssp CHHHHHHS--HHHHHH---HHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHT--------CCHHHH
T ss_pred CEehhccC--CcccHH---HHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHh--------CCHHHH
Confidence 35677887 456665 666677665555 455544442 12345666543 556654 223344
Q ss_pred HHHH-HHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHh---ccccCCCCchhHHHHHHHHHHh
Q 013085 162 EKVL-SFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS---LSLFGEKAPTERMKELIGIIEG 237 (449)
Q Consensus 162 e~~l-~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~---l~~~~~~~p~~~~qeLv~~i~e 237 (449)
..++ +++..++..+..+.-+ .-.+.|+++.++.++...+++-|.. +.+... +-| .-.++-+.+
T Consensus 88 ~~li~~~l~g~v~~Ls~~~~G---------~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D--~~G--nhVIQk~le 154 (382)
T 3v71_A 88 RELLRQMIDGGLLAMCKDKFA---------CRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTD--QIS--IHVIQRVVK 154 (382)
T ss_dssp HHHHHHHHHTCHHHHHTSTTH---------HHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHS--TTT--HHHHHHHHT
T ss_pred HHHHHHHhcchHHHHHhCccc---------hHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcC--ccc--ccHHHHHHH
Confidence 4444 4566666665433221 2333344444555555444433332 233322 223 223333333
Q ss_pred hhcccCCCCCCChhhHHHHHHHHH--HhhhhhccCCChhhHHHHHHHhhccCCCCCCh-hhhHHHHH-HHHhhCCCCChh
Q 013085 238 QADLDAQFNVSDADHIDRLISCLY--MALPFFLRGASGSKFLNYLNKHIIPVFDKLPE-ERKLDLLK-ALAEISPYTTPQ 313 (449)
Q Consensus 238 qa~Ld~~f~~sD~d~vdrli~Cl~--~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e-~~kL~lLK-~lAE~s~~~~~~ 313 (449)
. ++ ++..+.++..+. ..+.-.+....+++-+..+.++.-|. .+.|- ..+..++. +++++.+++...
T Consensus 155 ~------~~---~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~-~k~~~~~~r~~~l~~l~~~I~~~~~~L 224 (382)
T 3v71_A 155 Q------LP---VDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAEN-PKLPCFKFRIQLLHSLMTCIVRNCYRL 224 (382)
T ss_dssp T------SC---TTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCC-SSSTTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred H------CC---HHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHh-hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 233444454442 11222345677777777777765441 11110 23445554 345565554433
Q ss_pred hHhhhhHHHHHHHHhhC
Q 013085 314 DSRQILPSVAVLLKKYM 330 (449)
Q Consensus 314 da~~~l~~i~~~L~~ym 330 (449)
.--+.-+.|.+.+++.-
T Consensus 225 ~~d~~GNyVIQ~iL~~~ 241 (382)
T 3v71_A 225 SSNEFANYVIQYVIKSS 241 (382)
T ss_dssp HTSTTTHHHHHHHHTCC
T ss_pred hhCccccHHHHHHHhcC
Confidence 33445666777777664
No 124
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=28.30 E-value=51 Score=36.26 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=68.3
Q ss_pred HccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhc-ch
Q 013085 40 AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EE 118 (449)
Q Consensus 40 ~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqt-dd 118 (449)
+..+..=+=|-++=+.-||++++=..=+..+++++....|.|-+||.-|-..|-.++ .|+.+..+.++|-..|.. ||
T Consensus 271 ~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDD 348 (800)
T 3oc3_A 271 FLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEEL 348 (800)
T ss_dssp GGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCS
T ss_pred hcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcc
Confidence 334555555667777778885443324677888888889999999999999999998 678899999999888864 44
Q ss_pred hHHHHHHHHHHHHHH
Q 013085 119 IVERDAVHKALMSLL 133 (449)
Q Consensus 119 ~~E~~~V~~sL~~ll 133 (449)
+.+-..++|+|+
T Consensus 349 ---LSASTgSVMdLL 360 (800)
T 3oc3_A 349 ---ISVSKTSNLSLL 360 (800)
T ss_dssp ---CCTTHHHHHHHH
T ss_pred ---cchhhHHHHHHH
Confidence 777888888887
No 125
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=28.21 E-value=46 Score=35.04 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCHHHHHHHhhhhhHhhccCccchHH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 013085 43 TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (449)
Q Consensus 43 g~~k~K~LaAqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qAik~Lp~l 95 (449)
.++.+--.|+.=|..|.+++|.-..- +=..++.|..++|+.||.+|++.+-.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999976543 456678999999999999999876544
No 126
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=28.06 E-value=1.7e+02 Score=29.94 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhhccCCChh-------hHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHH
Q 013085 255 RLISCLYMALPFFLRGASGS-------KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK 327 (449)
Q Consensus 255 rli~Cl~~AlP~fS~~v~St-------kfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~ 327 (449)
.-+..+++|. +|...++.. +.+..+|+.+ |.|..|+ .+.++||-.-|=.++. ...-+.+.+--++++|.
T Consensus 207 ~aLAalRhAk-WFqara~~l~s~~ilIRilkdlc~R~-~~~~pL~-~waLELL~~~ai~s~~-~~l~~~~afRRVLElla 282 (383)
T 4at7_B 207 AALASLRHAK-WFQARANGLKSCVIVIRVLRDLCTRV-PTWGPLR-GWPLELLCEKSIGTAN-RPMGAGEALRRVLECLA 282 (383)
T ss_dssp HHHHHHHHHH-HCCCCCTTSTTHHHHHHHHHHHHHHC-GGGGGGT-THHHHHHHHHHHHTSS-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhH-HHHHhcccCCCceEEeehhhHHHHhc-CCcCCCc-HhHHHHHHHHHhhCCC-CCCCHHHHHHHHHHHHh
Confidence 3445688887 887766654 4677777766 7788888 8999999888887655 33447788889999999
Q ss_pred hhCCCCC
Q 013085 328 KYMPLRK 334 (449)
Q Consensus 328 ~ymP~~~ 334 (449)
.|+=+|.
T Consensus 283 sG~lLp~ 289 (383)
T 4at7_B 283 SGIVMPD 289 (383)
T ss_dssp TTTTSTT
T ss_pred cCcccCC
Confidence 9876653
No 127
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=26.95 E-value=6.5e+02 Score=27.44 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhh------ccCccchHHHHHHhhh-hhccc
Q 013085 8 AKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFF------KFFPDLSSRAVDAHLD-LIEEE 80 (449)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kff------k~FP~L~e~Ai~a~lD-LcEDe 80 (449)
+++|++| .+||+++.--..++++-.++-..+|..+.+ .+++=++.+. ..-+++-..+++.++- +|.|+
T Consensus 20 ~etI~~L---~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~--Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKL---CDRVASSTLLDDRRNAVRALKSLSKKYRLE--VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHH---HHHHHHCCSHHHHHHHHHHHHHTTTTTTTH--HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHH---HHHHhhccchhHHHHHHHHHHHHHHHhHHH--hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3446655 567777765456777777776666533211 1222222221 1234445555555543 33333
Q ss_pred chhH-HHHHhhccccccccCccchhhHH----------HHHHHHHhcchhHHHHHHHHHHHHHHccchhhH---------
Q 013085 81 ELGV-RVQAIRGLPLFCKDTPEYLSKIV----------DILVQLLAAEEIVERDAVHKALMSLLRQDVKAS--------- 140 (449)
Q Consensus 81 d~~I-R~qAik~Lp~lck~~~e~v~kia----------DVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~t--------- 140 (449)
+..- |.. -. ...+.--.+| -+|..||+++|.--+-.+=+.|..++...|..+
T Consensus 95 ~~~~~~~~-~~-------~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~ 166 (651)
T 3grl_A 95 EEEVEENS-TR-------QSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM 166 (651)
T ss_dssp ---------------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTT
T ss_pred cccccccc-cc-------cchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcc
Confidence 3210 100 00 0001112233 356778888888888788888888888887744
Q ss_pred -HHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085 141 -LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (449)
Q Consensus 141 -L~~lf~qI~~~~~~~~ee~~Re~~l~Fl~ 169 (449)
.+.|.+-+. ..-|.+|..++-+|.
T Consensus 167 gi~~Lv~lL~-----d~rE~iRneallLL~ 191 (651)
T 3grl_A 167 GVSRLMDLLA-----DSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHHHGGGG-----CSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-----CchHHHHHHHHHHHH
Confidence 444444343 345789999988886
No 128
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=23.40 E-value=1.5e+02 Score=35.10 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=57.6
Q ss_pred hHHHHHHhhhhhcccchhHHHHHhhccccccccCccchhhHHHHHHHHHhcc----------------hhHHHHHHHHHH
Q 013085 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE----------------EIVERDAVHKAL 129 (449)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtd----------------d~~E~~~V~~sL 129 (449)
.++..+.++++.+=.-..++...|..||.++-|. +|- .++..|.+||+.+ ++...+.|+...
T Consensus 155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~H~-~v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~v 232 (1323)
T 3s4w_B 155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDS-QHA-NVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQLV 232 (1323)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGG-GHH-HHHHHHHHHHHHCSTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcch-hhH-HHHHHHHHHHhcCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566666677666666677778888888887665 443 5777777777764 345566677777
Q ss_pred HHHHccchhhHHHHHHHhhccC
Q 013085 130 MSLLRQDVKASLTALFKHIGSV 151 (449)
Q Consensus 130 ~~ll~~d~k~tL~~lf~qI~~~ 151 (449)
++.+..=+-..|-++...|...
T Consensus 233 l~~L~s~~~e~LP~lIkFLL~s 254 (1323)
T 3s4w_B 233 MGKLSSVRLEDFPVIVKFLLHS 254 (1323)
T ss_dssp HHSTTSSCTTHHHHHHHHHHHS
T ss_pred HHHhccCChhhhHHHHHHHHHh
Confidence 7777766667777777777644
No 129
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=22.99 E-value=87 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=26.5
Q ss_pred cCHHhHHHHHHHccC-C--HHH-HHHHhhhhhHhhccCccchH
Q 013085 29 QNVKDYEGIIEAAKT-S--LKA-KQLAAQLIPRFFKFFPDLSS 67 (449)
Q Consensus 29 ~~~~~y~~Il~~~kg-~--~k~-K~LaAqfI~kffk~FP~L~e 67 (449)
+...+|+-|+++..- + .++ -.++-..--.|-.|||+|..
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~ 54 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELES 54 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHH
Confidence 566789999998872 2 333 34444444566699999986
No 130
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=22.82 E-value=3.6e+02 Score=25.15 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=84.9
Q ss_pred HHHHHHhhccccc--hHHHHHHH-HHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCChhhHHHHHHHHHHhhhh
Q 013085 190 ITDLIKKSLEDVT--GAEFRMFM-DFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPF 266 (449)
Q Consensus 190 i~~~ikK~L~dVt--~~EF~l~m-~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD~d~vdrli~Cl~~AlP~ 266 (449)
+...++.+|..+| ++.|+.+. +++..++..- .+. ...+.+|++|.++|=-+..| .....++-..+..-+|.
T Consensus 19 l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~-~~~-~~L~~vi~lIfekAi~ep~f----s~~YA~LC~~l~~~l~~ 92 (234)
T 3rk6_A 19 LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCV-TTD-DALQELVELIYQQATSIPNF----SYMGARLCNYLSHHLTI 92 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC-CSH-HHHHHHHHHHHHHHHSSTTC----HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCC-CCH-HHHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCC
Confidence 3444445556668 88998765 3443322211 233 34789999999997666555 56677887777665543
Q ss_pred hccCCChhhHHHHHHHhhccCCCCC------Chhhh---HHHHHHHHhhCCC----------CChhhHhhhhHHHHHHHH
Q 013085 267 FLRGASGSKFLNYLNKHIIPVFDKL------PEERK---LDLLKALAEISPY----------TTPQDSRQILPSVAVLLK 327 (449)
Q Consensus 267 fS~~v~Stkfv~y~~~~VlP~l~~L------~e~~k---L~lLK~lAE~s~~----------~~~~da~~~l~~i~~~L~ 327 (449)
+. .++.|=+++.+..--.|..- ++..| +-..+-++|+--. .+..-...++..+.+.+.
T Consensus 93 ~~---~~~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~ 169 (234)
T 3rk6_A 93 SP---QSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALF 169 (234)
T ss_dssp CC---TTCCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHH
T ss_pred CC---chhHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhcc
Confidence 32 34457666665433333321 11112 3456778887322 111112333444444333
Q ss_pred hhCCCCCCCCCCcchHHHHHHHHHHHhhhhcCCc
Q 013085 328 KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (449)
Q Consensus 328 ~ymP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~ 361 (449)
+. | + + ..|||+.-.++..|++.-.
T Consensus 170 ~~-p---~--e----e~vE~l~~lL~tvG~~Ld~ 193 (234)
T 3rk6_A 170 SN-P---M--D----DNLICAVKLLKLTGSVLED 193 (234)
T ss_dssp HS-C---C--H----HHHHHHHHHHHHHHHHHHH
T ss_pred CC-C---C--h----HHHHHHHHHHHHHHHHHhh
Confidence 32 2 2 1 3799999999999977543
Done!