BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013086
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 163/331 (49%), Gaps = 23/331 (6%)
Query: 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 132
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 133 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 231
Query: 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 232 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287
Query: 252 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 310
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 345
Query: 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 367
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 346 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Query: 368 SPVNKLHPRDDVLASGSSRSIFIWRPKEKSE 398
S +N+ +P D LAS I IW +E++
Sbjct: 403 SSLNEFNPMGDTLASAMGYHILIWSEQEEAR 433
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 23/328 (7%)
Query: 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 132
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 133 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 231
Query: 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 232 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287
Query: 252 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 310
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 345
Query: 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 367
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 346 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Query: 368 SPVNKLHPRDDVLASGSSRSIFIWRPKE 395
S +N+ +P D LAS I IW +E
Sbjct: 403 SSLNEFNPMGDTLASAMGYHILIWSQQE 430
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 23/328 (7%)
Query: 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 132
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 180
Query: 133 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 181 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 232
Query: 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 233 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 288
Query: 252 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 310
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 289 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 346
Query: 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 367
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 347 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 403
Query: 368 SPVNKLHPRDDVLASGSSRSIFIWRPKE 395
S +N+ +P D LAS I IW +E
Sbjct: 404 SSLNEFNPMGDTLASAMGYHILIWSQEE 431
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 23/323 (7%)
Query: 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDG 131
RRVT LE+HPT+ + G K G + +WD Y V K + G + ++FN N
Sbjct: 73 RRVTSLEWHPTHPTTVAVGSKGGDIILWD-YDVQNKTSFIQGMGPGDAITGMKFNQFNTN 131
Query: 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNF 190
++ +S G + D + + +W Y +D++ + ++ D+
Sbjct: 132 QLFVSSIRGATTLRDFSGSVIQVFAKTD--------SWDYWYCCVDVSVSRQMLATGDST 183
Query: 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EA 249
G L L+ + E + H+ +KV NP L+ + D ++WD+R + +
Sbjct: 184 GRLLLLGLDGHEIFKEKL--HK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 239
Query: 250 GSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308
S + ++PH++ VN+AYF+P+ S K+LTT Q N +R++ S + P + I+H H +
Sbjct: 240 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY--DWSKPDQIIIHPHRQFQ 297
Query: 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368
HLTP +A W P L V GRY + ID D +G LV ++ DPN I
Sbjct: 298 HLTPIKATWHPM---YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII 354
Query: 369 PVNKLHPRDDVLASGSSRSIFIW 391
+NK P DVLASG +I IW
Sbjct: 355 SLNKFSPTGDVLASGMGFNILIW 377
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNP 127
+ H +VT EF+P + ++ + V +WD + +K Y H VN FNP
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 128 TN 129
T+
Sbjct: 260 TD 261
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 23/323 (7%)
Query: 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDG 131
RRVT LE+HPT+ + G K G + +WD Y V K + G + ++FN N
Sbjct: 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWD-YDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132
Query: 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNF 190
++ +S G + D + + +W Y +D++ + ++ D+
Sbjct: 133 QLFVSSIRGATTLRDFSGSVIQVFAKTD--------SWDYWYCCVDVSVSRQMLATGDST 184
Query: 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EA 249
G L L+ + E + H+ +KV NP L+ + D ++WD+R + +
Sbjct: 185 GRLLLLGLDGHEIFKEKL--HK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240
Query: 250 GSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308
S + ++PH++ VN+AYF+P+ S K+LTT Q N +R++ S + P + I+H H +
Sbjct: 241 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY--DWSKPDQIIIHPHRQFQ 298
Query: 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368
HLTP +A W P L V GRY + ID D +G LV ++ DPN I
Sbjct: 299 HLTPIKATWHPM---YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355
Query: 369 PVNKLHPRDDVLASGSSRSIFIW 391
+NK P DVLASG +I IW
Sbjct: 356 SLNKFSPTGDVLASGMGFNILIW 378
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNP 127
+ H +VT EF+P + ++ + V +WD + +K Y H VN FNP
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 128 TN 129
T+
Sbjct: 261 TD 262
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 33/246 (13%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-E 108
+ T KP V P+ + H++ V+ ++F P N L S + +W Y E
Sbjct: 24 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE 82
Query: 109 KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168
K + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 83 KTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN------- 132
Query: 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 133 --YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAV 179
Query: 228 ------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281
L++S D RIWD + +L D V+ FSP+G IL + DN
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDN 238
Query: 282 RLRIWD 287
L++WD
Sbjct: 239 TLKLWD 244
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 82
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 47 LRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV 106
L + T KP V P+ + H++ V+ ++F P N L S + +W Y
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG 61
Query: 107 S-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165
EK + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 62 KFEKTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---- 114
Query: 166 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 115 -----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPV 158
Query: 226 QP-------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278
L++S D RIWD + +L D V+ FSP+G IL +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT 217
Query: 279 QDNRLRIWD 287
DN L++WD
Sbjct: 218 LDNTLKLWD 226
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 33/246 (13%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-E 108
+ T KP V P+ + H++ V+ ++F P N L S + +W Y E
Sbjct: 22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE 80
Query: 109 KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168
K + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 81 KTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN------- 130
Query: 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 131 --YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAV 177
Query: 228 ------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281
L++S D RIWD + +L D V+ FSP+G IL + DN
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDN 236
Query: 282 RLRIWD 287
L++WD
Sbjct: 237 TLKLWD 242
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 201 NSRSGEAILIHRKGSKVVGL-HCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDLPH 258
NS +GE + + + S+ V H LLL+ G+ D F ++WD+ + E +++ H
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGH 748
Query: 259 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 318
VN FSP + + S D L++WD+ N R+ ++ F +L
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN----ERKSINVKQFFLNL-------- 796
Query: 319 PKDPSESLAVIGRYISENYNG-----AALHPIDFIDITTGQLVAEVMDPNITTI-----S 368
+DP E + VI + S + +G AA + I DI T L+ E+ + +TI S
Sbjct: 797 -EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 369 PVNKLHPRDDVLASGSSRSIFIWRPKEKSELVE 401
P N L + + S + +W +S++ +
Sbjct: 856 PQNHL-----AVVALSQYCVELWNTDSRSKVAD 883
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 15/223 (6%)
Query: 72 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 129
HS +V C F +++H+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 760
Query: 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNP---NGWHGPRTWRMLYGMDINPEKGVVLV 186
D + + S+DGT+ D + +NV N ++ G ++
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 187 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246
++L D T+ GE IH + Q L + + + +W+
Sbjct: 821 VAAKNKIFLFDIHTSGLLGE---IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT-- 875
Query: 247 LEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288
++ S + D H V+ FSP GS LT+S D +R+W++
Sbjct: 876 -DSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 47 LRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV 106
+ + T KP V P+ + H++ V+ ++F P N L S + +W Y
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG 61
Query: 107 S-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165
EK + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 62 KFEKTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---- 114
Query: 166 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 115 -----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPV 158
Query: 226 QP-------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278
L++S D RIWD + +L D V+ FSP+G IL +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT 217
Query: 279 QDNRLRIWD 287
DN L++WD
Sbjct: 218 LDNTLKLWD 226
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 3 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 61
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 62 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 109
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHF 158
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 284 RIWD 287
++WD
Sbjct: 218 KLWD 221
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 59
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 33/246 (13%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-E 108
+ T KP V P+ + H++ V+ ++F P N L S + +W Y E
Sbjct: 5 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE 63
Query: 109 KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168
K + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 64 KTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN------- 113
Query: 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 114 --YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAV 160
Query: 228 ------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281
L++S D RIWD + +L D V+ FSP+G IL + DN
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDN 219
Query: 282 RLRIWD 287
L++WD
Sbjct: 220 TLKLWD 225
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 63
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 19 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 77
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 78 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 125
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHF 174
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 284 RIWD 287
++WD
Sbjct: 234 KLWD 237
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 75
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 60
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 61 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 108
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHF 157
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 284 RIWD 287
++WD
Sbjct: 217 KLWD 220
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 60
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 61 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 108
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T K K + H +P+
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHF 157
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 284 RIWD 287
++WD
Sbjct: 217 KLWD 220
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 55 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 113
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 70 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 117
Query: 174 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 227
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 166
Query: 228 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 287 D 287
D
Sbjct: 226 D 226
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 5 TQSKPTPVKPNYALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 64 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 111
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T G + K + H +P+
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKT----GMCL-------KTLPAHSDPVSAVHF 160
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 284 RIWD 287
++WD
Sbjct: 220 KLWD 223
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 55 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 113
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 59
Query: 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 60 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 107
Query: 174 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 227
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 156
Query: 228 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 287 D 287
D
Sbjct: 216 D 216
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 54
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 33/244 (13%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI 110
T KP V P+ + H++ V+ ++F P N L S + +W Y EK
Sbjct: 5 TQSKPTPVKPNYALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 170
+ G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 64 ISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------- 111
Query: 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--- 227
++ + NP+ +++ + + D +T G + K + H +P+
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKT----GMCL-------KTLPAHSDPVSAVHF 160
Query: 228 ----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
L++S D RIWD + +L D V+ FSP+G IL + DN L
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 284 RIWD 287
++WD
Sbjct: 220 KLWD 223
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 42/253 (16%)
Query: 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG------------NI 115
V R H + L+ P +LSG G + ++D S + Y ++
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGM 175
H V +++ P + G ++S D T+ D T + N +Y
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE----------ETVYSH 147
Query: 176 DINP---EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232
++P + +V V + L D ++ S S + HR+ +++ + +P +L +
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQ--EILAVSWSPRYDYILAT 204
Query: 233 CGNDHFARIWDIRRLEA--------------GSSLCDLPHKRVVNSAYFSPSGSKILTTS 278
D ++WD+RR + H VN F+ G +LT
Sbjct: 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264
Query: 279 QDNRLRIWDSIFG 291
DNR+R+W+S G
Sbjct: 265 TDNRMRLWNSSNG 277
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 38/251 (15%)
Query: 45 RQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY 104
+Q+ ++KP + + + H++ V+ ++F P N L S + +W Y
Sbjct: 3 QQMGRGSEFVKPNYALK-----FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Query: 105 KVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 163
EK + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 57 DGKFEKTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-- 111
Query: 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223
++ + NP+ +++ + + D +T K K + H +
Sbjct: 112 -------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSD 153
Query: 224 PIQP-------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276
P+ L++S D RIWD + +L D V+ FSP+G IL
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 277 TSQDNRLRIWD 287
+ DN L++WD
Sbjct: 213 ATLDNTLKLWD 223
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 38/251 (15%)
Query: 45 RQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY 104
+Q+ ++KP + + + H++ V+ ++F P N L S + +W Y
Sbjct: 3 QQMGRGSEFVKPNYALK-----FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Query: 105 KVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 163
EK + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 57 DGKFEKTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-- 111
Query: 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223
++ + NP+ +++ + + D +T K K + H +
Sbjct: 112 -------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSD 153
Query: 224 PIQP-------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276
P+ L++S D RIWD + +L D V+ FSP+G IL
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 277 TSQDNRLRIWD 287
+ DN L++WD
Sbjct: 213 ATLDNTLKLWD 223
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 229 LLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
LLL+ G ND F ++WD+ + E +++ H VN FSP + + S D LR+WD
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG-----AAL 342
V S + + + R +DP E + VI + S + +G AA
Sbjct: 779 -------------VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 825
Query: 343 HPIDFIDITTGQLVAEVMDPNITTI 367
+ + DI T L+AE+ + +TI
Sbjct: 826 NKVLLFDIHTSGLLAEIHTGHHSTI 850
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 72 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 129
HS +V C F +NH+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 761
Query: 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189
D + + S+DGT+ D+ + +NV R + PE V+V
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSINVK----------RFFLSSEDPPEDVEVIVK-- 809
Query: 190 FGFLYLVDARTNSRSGEAILIHRKGSKVV-GLHCNPIQPEL-------LLSCG---NDHF 238
+ S G+ I++ K ++ +H + + E+ + C DH
Sbjct: 810 --------CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 861
Query: 239 A---------RIWDI-RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288
A +W+I RL+ H V+ FSP GS LT S D +R+W++
Sbjct: 862 AVIALSQYCVELWNIDSRLKVADC---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 229 LLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
LLL+ G ND F ++WD+ + E +++ H VN FSP + + S D LR+WD
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG-----AAL 342
V S + + + R +DP E + VI + S + +G AA
Sbjct: 772 -------------VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818
Query: 343 HPIDFIDITTGQLVAEVMDPNITTI 367
+ + DI T L+AE+ + +TI
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTI 843
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 72 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 129
HS +V C F +NH+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 754
Query: 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189
D + + S+DGT+ D+ + +NV R + PE V+V
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSINVK----------RFFLSSEDPPEDVEVIVK-- 802
Query: 190 FGFLYLVDARTNSRSGEAILIHRKGSKVV-GLHCNPIQPEL-------LLSCG---NDHF 238
+ S G+ I++ K ++ +H + + E+ + C DH
Sbjct: 803 --------CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854
Query: 239 A---------RIWDI-RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288
A +W+I RL+ H V+ FSP GS LT S D +R+W++
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADC---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTND 130
H++ V+ ++F P N L S + +W Y EK + G H ++++ ++ ++
Sbjct: 21 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWS-SDS 76
Query: 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
+ +AS D T+ D+ +G L + + N ++ + NP+ +++
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFD 127
Query: 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-------ELLLSCGNDHFARIWD 243
+ + D +T K K + H +P+ L++S D RIWD
Sbjct: 128 ESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 244 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+ +L D V+ FSP+G IL + DN L++WD
Sbjct: 177 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 22/226 (9%)
Query: 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 127
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 101 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 157
Query: 128 TNDGTVYAASS-DGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDINPEKGVV 184
DG++ +SS DG D +G L + + NP P ++ + +P +
Sbjct: 158 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSF-----VKFSPNGKYI 206
Query: 185 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244
L A L L D + + + H+ + + + + ++S D+ IW++
Sbjct: 207 LAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 245 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDS 288
+ E L H VV S P+ + I + + D +++W S
Sbjct: 266 QTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 57
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 105/251 (41%), Gaps = 38/251 (15%)
Query: 45 RQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY 104
+Q+ ++KP + + + H++ V+ ++F P N L + + +W Y
Sbjct: 3 QQMGRGSEFVKPNYALK-----FTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAY 56
Query: 105 KVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 163
EK + G H ++++ ++ ++ + +AS D T+ D+ +G L + + N
Sbjct: 57 DGKFEKTISG--HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-- 111
Query: 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223
++ + NP+ +++ + + D +T K K + H +
Sbjct: 112 -------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSD 153
Query: 224 PIQP-------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276
P+ L++S D RIWD + +L D V+ FSP+G IL
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 277 TSQDNRLRIWD 287
+ DN L++WD
Sbjct: 213 ATLDNTLKLWD 223
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 22/226 (9%)
Query: 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 127
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 105 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 161
Query: 128 TNDGTVYAASS-DGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDINPEKGVV 184
DG++ +SS DG D +G L + + NP P ++ + +P +
Sbjct: 162 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSF-----VKFSPNGKYI 210
Query: 185 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244
L A L L D + + + H+ + + + + ++S D+ IW++
Sbjct: 211 LAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 245 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDS 288
+ E L H VV S P+ + I + + D +++W S
Sbjct: 270 QTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294
H + V+S FSP+G + +S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE 61
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 24/241 (9%)
Query: 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK---------IVYG 113
++ C + H V + P N HI+ + V V+D+ K K +
Sbjct: 116 KIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRL 175
Query: 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG------LALSLMNVNPNGWHGPR 167
H + +N G + +AS D TV D+ G + + +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227
W +L+ E VAD+ L + D R+N+ S + L+ ++V L NP
Sbjct: 236 AWHLLH------ESLFGSVADDQK-LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 286
+L + D +WD+R L+ + HK + ++SP IL +S D RL +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 287 D 287
D
Sbjct: 348 D 348
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV 111
T KP+H++ H+ V CL F+P + IL +G V +WD + K+
Sbjct: 263 TTSKPSHLV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147
H + + ++P N+ + ++ +D ++ DL
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 24/241 (9%)
Query: 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK---------IVYG 113
++ C + H V + P N HI+ + V V+D+ K K +
Sbjct: 116 KIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRL 175
Query: 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG------LALSLMNVNPNGWHGPR 167
H + +N G + +AS D TV D+ G + + +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227
W +L+ E VAD+ L + D R+N+ S + L+ ++V L NP
Sbjct: 236 AWHLLH------ESLFGSVADDQK-LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 286
+L + D +WD+R L+ + HK + ++SP IL +S D RL +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 287 D 287
D
Sbjct: 348 D 348
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 52 TYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV 111
T KP+H++ H+ V CL F+P + IL +G V +WD + K+
Sbjct: 263 TTSKPSHLV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147
H + + ++P N+ + ++ +D ++ DL
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 28/219 (12%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V + F P I + D K V +W+ + + G HS VN + F P DG
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVNGVAFRP--DG 274
Query: 132 -TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
T+ +AS D TV + L +L H W G+ +P+ + A +
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDGQTIASASDD 324
Query: 191 GFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249
+ L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 325 KTVKLWN-----RNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN----RN 374
Query: 250 GSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
G L L H V FSP G I + S D +++W+
Sbjct: 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 28/219 (12%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V + F P I + D K V +W+ + + G HS V + F+P DG
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVRGVAFSP--DG 397
Query: 132 -TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
T+ +AS D TV + L +L H W G+ +P+ + A +
Sbjct: 398 QTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDDQTIASASDD 447
Query: 191 GFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249
+ L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 448 KTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN----RN 497
Query: 250 GSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
G L L H V FSP G I + S D +++W+
Sbjct: 498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 28/219 (12%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V + F P I + D K V +W+ + + G HS V + F+P DG
Sbjct: 97 HSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVWGVAFSP--DG 151
Query: 132 -TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
T+ +AS D TV + L +L H W G+ +P+ + A +
Sbjct: 152 QTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDGQTIASASDD 201
Query: 191 GFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249
+ L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 202 KTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN----RN 251
Query: 250 GSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
G L L H VN F P G I + S D +++W+
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V + F P I + D K V +W+ + + G HS V + F+P +D
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVWGVAFSP-DDQ 439
Query: 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191
T+ +AS D TV + L +L + + + G+ +P+ + A +
Sbjct: 440 TIASASDDKTVKLWNRNGQLLQTLTGHSSS----------VRGVAFSPDGQTIASASDDK 489
Query: 192 FLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 250
+ L + R+G+ + + S V G+ +P + + S +D ++W+ G
Sbjct: 490 TVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN----RNG 539
Query: 251 SSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
L L H V FSP G I + S D +++W+
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 28/219 (12%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V + F P I + D K V +W+ + + G HS V + F+P DG
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQHLQTLTG--HSSSVWGVAFSP--DG 356
Query: 132 -TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
T+ +AS D TV + L +L + + + G+ +P+ + A +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSS----------VRGVAFSPDGQTIASASDD 406
Query: 191 GFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249
+ L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 407 KTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWN----RN 456
Query: 250 GSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
G L L H V FSP G I + S D +++W+
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137
C++ HP H++ +G + G + +WD + + + H + + F+P+N ++ S
Sbjct: 241 CVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCS 300
Query: 138 SDGTVSCTDLET 149
DG++ D T
Sbjct: 301 EDGSLWHWDAST 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSC 118
N ++ H+ V + + P N++++ SG + V VW+ + E ++ H+
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMD 176
V + ++PT + +A D + D+ TG A+ + +V+P+ +Y +D
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVD 183
Query: 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236
+ + ++ + + +++ R + E H +G++ V H + +L+ G
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-EGTRPV--HAVFVSEGKILTTGFS 240
Query: 237 HFAR----IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWD 287
+ +WD + LE SL +L V +F P + + L D+ +R ++
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHS 117
V+P + + H++RV + +HPT ++LLS + VWD + + G ++H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 118 CIVNNIRFNPTNDGTVYAASSDGTVSCT 145
+ ++ + S DG + CT
Sbjct: 177 DTIYSVDW-----------SRDGALICT 193
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT 128
+ H+ V CL F+P + IL +G V +WD + K+ H + ++++P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 129 NDGTVYAASSDGTVSCTDL 147
N+ + ++ +D ++ DL
Sbjct: 329 NETILASSGTDRRLNVWDL 347
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLE---------------TGLALSLMNVNPNGWHGPR 167
+ +NP G + +AS D T+ D+ TG + +V
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV--------- 233
Query: 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227
+W +L+ E VAD+ L + D R+N+ S + + ++V L NP
Sbjct: 234 SWHLLH------ESLFGSVADDQK-LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE 286
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 286
+L + D +WD+R L+ + HK + +SP IL +S D RL +W
Sbjct: 287 FILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 287 D-SIFGNLDSP 296
D S G SP
Sbjct: 346 DLSKIGEEQSP 356
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNSAYFSPSGSK 273
GL NP LLS +DH +WDI + + D H VV +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 274 IL-TTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 307
+ + + D +L IWD+ N PS + H+ + N
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK 109
N KP+H + H+ V CL F+P + IL +G V +WD + K
Sbjct: 265 NNNTSKPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 110 IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147
+ H + ++++P N+ + ++ +D + DL
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 176
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 245
Query: 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 246 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 237 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 287
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 302 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 272
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 307
+ + D +L IWD+ N PS + H+ + N
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK 109
N KP+H + H+ V CL F+P + IL +G V +WD + K
Sbjct: 267 NNNTSKPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 110 IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147
+ H + ++++P N+ + ++ +D + DL
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 176
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 247
Query: 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 248 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 237 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 287
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 304 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 272
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 307
+ + D +L IWD+ N PS + H+ + N
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 50 NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK 109
N KP+H + H+ V CL F+P + IL +G V +WD + K
Sbjct: 263 NNNTSKPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 110 IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147
+ H + ++++P N+ + ++ +D + DL
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 176
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 243
Query: 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 244 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 237 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 287
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 300 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 272
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 307
+ + D +L IWD+ N PS + H+ + N
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
H+ V L + N ++ +SG V +WD S + + H +N+++F P DG
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP--DG 261
Query: 132 TVYA-ASSDGTVSCTDLETGLALSLMNVNPN 161
+ S DGT D+ TG L + N P+
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 39/244 (15%)
Query: 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN 121
D V C ++ HS +V L++ P N I+ S + G++ VW+ S+K +H V
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWNAL-TSQKTHAIKLHCPWVM 112
Query: 122 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK 181
F P +V+C L++ A S+ N++ R M + K
Sbjct: 113 ECAFAPNGQ----------SVACGGLDS--ACSIFNLSS---QADRDGNMPVSRVLTGHK 157
Query: 182 GVVLVADNFGFLYLVDARTNSRSGEAILI------------------HRKGSKVVGLHCN 223
G A + ++ + R + SG+ + + V+ L N
Sbjct: 158 GY---ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
+ + +S D R+WD+R + + + H+ +NS F P G + T S D
Sbjct: 215 SLNANMFISGSCDTTVRLWDLR-ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 284 RIWD 287
R++D
Sbjct: 274 RLFD 277
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 46/233 (19%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
H++ V + F P N I+ SG + + VW+ + H+ V+ +RF+P+ D
Sbjct: 108 HTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 132 TVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
V + D V DL TG ++ + + N + + ++P+ + +D
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTN---------YVTSVTVSPDGSLCASSDKD 217
Query: 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 250
G L D GEA+ G+ + + +P R W E G
Sbjct: 218 GVARLWDLT----KGEALSEMAAGAPINQICFSP--------------NRYWMCAATEKG 259
Query: 251 SSLCDLPHKRVVN-----------------SAYFSPSGSKILTTSQDNRLRIW 286
+ DL +K ++ S +S GS + + DN +R+W
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 205 GEAILIHRKGSKVVGLHCNPIQPEL----LLSCGNDHFARIWDIRRLEAGSSLCDLP-HK 259
GE + +G+ + C P L ++S G D+ ++WD L G + DL H
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD---LATGRLVTDLKGHT 196
Query: 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291
V S SP GS ++ +D R+WD G
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+S DH R+W+++ + L H + V S FSP +I++ +DN LR+W+
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKF--LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 272
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 210
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 316
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 211 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 253
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 272
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 110 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 169
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 316
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 170 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 212
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 272
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 316
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 175 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 217
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 272
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 173
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 316
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 174 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 216
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 272
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 173
Query: 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 316
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 174 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 216
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSC 118
N ++ H+ V + + P N++++ SG + V VW+ + E ++ H+
Sbjct: 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMD 176
V + ++PT + +A D + D+ TG A+ + +V+P+ +Y +D
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVD 183
Query: 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236
+ + ++ + + +++ R + E H +G++ V H + +L+ G
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-EGTRPV--HAVFVSEGKILTTGFS 240
Query: 237 HFAR----IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWD 287
+ +WD + LE SL +L V +F P + + L D+ +R ++
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHS 117
V+P + + H++RV + +HPT ++LLS + VWD + + G ++H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 118 CIVNNIRFNPTNDGTVYAASSDGTVSCT 145
+ ++ + S DG + CT
Sbjct: 177 DTIYSVDW-----------SRDGALICT 193
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281
C + L + D RIWDI + L H++ + S + PSG K+++ S D
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 282 RLRIWD 287
+RIWD
Sbjct: 188 TVRIWD 193
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 120/307 (39%), Gaps = 40/307 (13%)
Query: 6 LCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVN 65
L K HT++ C + + + G A+ N V V + L ++ A+ P+ +N
Sbjct: 57 LHKSLDHTSVVCCVKFSND-GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIR 124
+ + + F P + L +G + + +WD + KIV H + ++
Sbjct: 116 TSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLD 172
Query: 125 FNPTNDGTVYAASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEK 181
+ P+ D V + S D TV DL TG L LS+ + P + + + ++
Sbjct: 173 YFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL--DR 229
Query: 182 GVVLVADNFGFLY-LVDARTNSRSGE-----AILIHRKGSKVVGLHCNPIQPELLLSCGN 235
V + GFL +D+ S +G +++ R G VV S
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-------------SGSL 276
Query: 236 DHFARIWDIRRLE-------AGSSLCDLP---HKRVVNSAYFSPSGSKILTTSQDNRLRI 285
D ++W+++ S C++ HK V S + + IL+ S+D +
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 286 WDSIFGN 292
WD GN
Sbjct: 337 WDKKSGN 343
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 203 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD------IRRLEAGSSLCDL 256
R+G+ L V + +P + + + D R+WD + RL++ +
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGT 253
Query: 257 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298
HK V S F+ G +++ S D +++W+ N S S+
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 86 NHILLSGDKKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143
++IL+SG+ V +WD + + + N H V ++FN V +S DGTV
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVK 385
Query: 144 CTDLETGLALSLMNVNPNGWHGPRTWRM 171
DL+TG + + +G G WR+
Sbjct: 386 LWDLKTGEFIRNLVTLESGGSGGVVWRI 413
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 210 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFS 268
+H V + C ++S D ++WD E + L L H V S F
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTLQGHTNRVYSLQFD 288
Query: 269 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 328
G +++ S D +R+WD GN +H+ ++ LT
Sbjct: 289 --GIHVVSGSLDTSIRVWDVETGN-------CIHTLTGHQSLTS---------------- 323
Query: 329 IGRYISEN--YNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSR 386
G + +N +G A + DI TGQ + + PN + ++ V+ S
Sbjct: 324 -GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382
Query: 387 SIFIWRPK 394
++ +W K
Sbjct: 383 TVKLWDLK 390
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 58/216 (26%)
Query: 72 HSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTND 130
H V CL+ P+ + +SG + VWD + + + H VN++R+ P+ D
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-RSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190
+A+ SD +C LY D+ ++ V +
Sbjct: 254 --AFASGSD-DATC--------------------------RLY--DLRADREVAIY---- 278
Query: 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 250
S E+I+ G+ V + LL + ND+ +WD+ +
Sbjct: 279 -------------SKESIIF---GASSVDF---SLSGRLLFAGYNDYTINVWDVLKGSRV 319
Query: 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
S L H+ V++ SP G+ + S D+ LR+W
Sbjct: 320 SIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 210 IHRKGSKVVGLHCNPIQP-ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 268
H G+ V+ L P + +S G D A +WD+R + + H+ VNS +
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNSVRYY 249
Query: 269 PSGSKILTTSQDNRLRIWD 287
PSG + S D R++D
Sbjct: 250 PSGDAFASGSDDATCRLYD 268
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+LL SC D ++WD + E ++ H V+S P+G I++ S+D +++W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 288 SIFG 291
G
Sbjct: 221 VQTG 224
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+ +LSC +D R+WD + +L H+ V S F + ++T S D +++W+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 92/248 (37%), Gaps = 54/248 (21%)
Query: 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFN 126
++ H+ V + F + +L S + +WDF + ++G+ H+ V+++
Sbjct: 145 TLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHN--VSSVSIM 201
Query: 127 PTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 186
P D V +AS D T+ +++TG + G R W + + P + L+
Sbjct: 202 PNGDHIV-SASRDKTIKMWEVQTGYCVKTFT-------GHREWVRM----VRPNQDGTLI 249
Query: 187 A----DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-------------- 228
A D +++V + E R+ VV C PE
Sbjct: 250 ASCSNDQTVRVWVVATK------ECKAELREHRHVV--ECISWAPESSYSSISEATGSET 301
Query: 229 --------LLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ 279
LLS D ++WD+ G L L H V F G IL+ +
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 280 DNRLRIWD 287
D LR+WD
Sbjct: 359 DKTLRVWD 366
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 53/244 (21%)
Query: 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSCIV 120
+R H+ VT + N I++S + + +W Y V+++ + G HS V
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--HSHFV 433
Query: 121 NNIRFNPTNDGT-VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP 179
++ ++DG + S DG + DL G++ +
Sbjct: 434 EDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRF--------------------VGH 471
Query: 180 EKGVVLVADNFGFLYLVDAR----------------TNSRSGEAILIHRKGSKVVGLHCN 223
K V+ VA + +V A T S GE HR V N
Sbjct: 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG---HRDWVSCVRFSPN 528
Query: 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283
+QP ++ S D ++W++ + S+L H V++ SP GS + +D +
Sbjct: 529 TLQPTIV-SASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 284 RIWD 287
+WD
Sbjct: 586 LLWD 589
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 228 ELLLSCGNDHFARIWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
+ LS D R+WD L AG S+ + H + V S FS +I++ S+D +++W
Sbjct: 443 QFALSGSWDGELRLWD---LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 287 DSI 289
+++
Sbjct: 500 NTL 502
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 212 RKGSKVVGLHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCD---LPHKRVVNSAYF 267
R + +V PI ++++S D +W + + + + H V
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 268 SPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
S G L+ S D LR+WD G S R + H+ D
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGV--STRRFVGHTKD 474
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 99/278 (35%), Gaps = 44/278 (15%)
Query: 64 VNCAVIRYHSRRVTCL--EFHPTNNH---ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC 118
V ++ HS VT + F N +L+SG + V +W Y+ + +G H
Sbjct: 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 119 I------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172
+ V+++ + N + ++S D T+ DL TG + + +
Sbjct: 72 LTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQS---------EV 121
Query: 173 YGMDINPEKGVVLVA---------DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223
Y + +P+ +L A + G A + S +
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 224 PIQPELLLSCGNDHFARIWD----IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 279
P P S G D ++W+ IR H+ VN SP+G I T +
Sbjct: 182 PFAP-YFASVGWDGRLKVWNTNFQIRYTFKA-------HESNVNHLSISPNGKYIATGGK 233
Query: 280 DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 317
D +L IWD + NL P RE N+ + +W
Sbjct: 234 DKKLLIWDIL--NLTYPQREFDAGSTINQIAFNPKLQW 269
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 182 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241
GV L +N LY T + L G V + P P+++LS D +
Sbjct: 10 GVDLGTEN---LYFQSMMTEQMTLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIM 65
Query: 242 WDIRRLEAGSSLCDLP---HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298
W + R E + H V+ S G L+ S D LR+WD G + R
Sbjct: 66 WKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT--TTRR 123
Query: 299 EIVHSHD 305
+ H+ D
Sbjct: 124 FVGHTKD 130
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 127
H++ V + F N I+ SG + + +W+ V + V HS V+ +RF+P
Sbjct: 127 HTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 229 LLLSCGNDHFARIWDIRRLEAGSSLC----DLPHKRVVNSAYFSPSGSKILTTSQDNRLR 284
LL SCG D RIW E S +C H+R V +SP G+ + + S D
Sbjct: 30 LLASCGGDRRIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86
Query: 285 IW 286
IW
Sbjct: 87 IW 88
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 188 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 247
D +++ VD + H + K V H P Q ELL S D +++ R
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH--PSQ-ELLASASYDDTVKLY---RE 179
Query: 248 EAGSSLCDLP---HKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
E +C H+ V S F PSG ++ + S D +RIW
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---HKRVVNSAYFSPSGSK 273
V + P P+++LS D +W + R E + H V+ S G
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 77
Query: 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
L+ S D LR+WD G + R + H+ D
Sbjct: 78 ALSGSWDGTLRLWDLTTGT--TTRRFVGHTKD 107
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 127
H++ V + F N I+ SG + + +W+ V + V HS V+ +RF+P
Sbjct: 104 HTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 158
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 70
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 71 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 103
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 270
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%)
Query: 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN 122
QV I+ V +F N I++ D ++ V++ Y EK+V H + +
Sbjct: 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFN-YNTGEKVVDFEAHPDYIRS 102
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 182
I +PT V + S D TV + E AL + G + M NP+
Sbjct: 103 IAVHPTKP-YVLSGSDDLTVKLWNWENNWALE------QTFEGHEHFVMCVAF--NPKDP 153
Query: 183 VVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241
+ V + S + +G V + P +P +++ +D +I
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212
Query: 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288
WD + ++L H V+ A F P+ I++ S+D L+IW+S
Sbjct: 213 WDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%)
Query: 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN 122
QV I+ V +F N I++ D ++ V++ Y EK+V H + +
Sbjct: 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFN-YNTGEKVVDFEAHPDYIRS 102
Query: 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 182
I +PT V + S D TV + E AL + G + M NP+
Sbjct: 103 IAVHPTKP-YVLSGSDDLTVKLWNWENNWALE------QTFEGHEHFVMCVAF--NPKDP 153
Query: 183 VVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241
+ V + S + +G V + P +P +++ +D +I
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212
Query: 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288
WD + ++L H V+ A F P+ I++ S+D L+IW+S
Sbjct: 213 WDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 243 DIRRLEAGSSL---CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
DI+ L++ +L D H + F PSG ++++SQD +L+IW
Sbjct: 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
E L+S D +IW ++ +L + H+ V G +L+ S D +R+W+
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 288 SIFGNLDSPSREIVHSHDFNRHLTP 312
G H FNR P
Sbjct: 210 CGTGTT---------IHTFNRKENP 225
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 243 DIRRLEAGSSL---CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286
DI+ L++ +L D H + F PSG ++++SQD +L+IW
Sbjct: 117 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
E L+S D +IW ++ +L + H+ V G +L+ S D +R+W+
Sbjct: 149 EALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 288 SIFGNLDSPSREIVHSHDFNRHLTP 312
G H FNR P
Sbjct: 207 CGTG---------TTIHTFNRKENP 222
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 48/251 (19%)
Query: 200 TNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE--------A 249
+N R G L IH + G++C + ++S D+ +IWD LE
Sbjct: 114 SNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT 173
Query: 250 GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD----SIFGNLDSPSREIVHSHD 305
GS LC +RV I+T S D+ +R+WD + L ++H
Sbjct: 174 GSVLCLQYDERV------------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 306 FNRHLTPFR-----AEWDPKDPSESLAVIGRYISENYNGAALHPIDFID--ITTGQLVAE 358
N + A WD P++ + R + + AA++ +DF D I +
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHR-AAVNVVDFDDKYIVSASGDRT 277
Query: 359 VMDPNITTISPVNKLHP----------RDDVLASGSS-RSIFIWRPKEKSELVEQKEEMK 407
+ N +T V L+ RD ++ SGSS +I +W + + L + +
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 408 IIVCGKADKKQ 418
++ C + D K+
Sbjct: 338 LVRCIRFDNKR 348
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 37/261 (14%)
Query: 36 GNPVEYVFERQLRPNMTYMKPAHVIPDQVNC---AVIRYHSRR-----VTCLEFHPTNNH 87
GN F R L P + ++ I C ++ R H R V CL++ ++
Sbjct: 90 GNAPPNSFYRALYPKI--IQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY---DDQ 144
Query: 88 ILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146
++SG + + +WD + ++I+ G+ S + ++ + SSD TV D
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWD 199
Query: 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE 206
+ TG ++N + R GM + K D ++ + + T+
Sbjct: 200 VNTG---EMLNTLIHHCEAVLHLRFNNGMMVTCSK------DRSIAVWDMASPTDITLRR 250
Query: 207 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAY 266
++ HR VV + ++S D ++W+ E +L HKR + A
Sbjct: 251 VLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRGI--AC 301
Query: 267 FSPSGSKILTTSQDNRLRIWD 287
+++ S DN +R+WD
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWD 322
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 211 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 270
+G V + P +P +++ +D +IWD + ++L H V+ A F P+
Sbjct: 183 QERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPT 239
Query: 271 GSKILTTSQDNRLRIWDS 288
I++ S+D L+IW+S
Sbjct: 240 LPIIISGSEDGTLKIWNS 257
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE 108
A HS V ++F+ +++L SG G++ +WD K +E
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 211 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 270
+G V + P +P +++ +D +IWD + ++L H V+ A F P+
Sbjct: 183 QERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPT 239
Query: 271 GSKILTTSQDNRLRIWDS 288
I++ S+D L+IW+S
Sbjct: 240 LPIIISGSEDGTLKIWNS 257
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 69 IRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 127
+RY H++ +T L + L S D +G + WD V+ ++H+ ++ I+
Sbjct: 319 VRYGHNKAITALS-SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK--T 375
Query: 128 TNDGTVYAASSD 139
T+ G ++ S D
Sbjct: 376 TSKGDLFTVSWD 387
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 252 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
SL ++ H V +SP G+KI + S D ++IW+
Sbjct: 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 131
HS V C+ P + I LS + G++ +WD K I C + I PT+
Sbjct: 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT---RIDFCASDTI---PTS-- 231
Query: 132 TVYAASSDGTVSCTDLETGLALSLMNV-NPN 161
+ D T +C D ETG +SL+N+ NP+
Sbjct: 232 VTWHPEKDDTFACGD-ETG-NVSLVNIKNPD 260
>pdb|1R45|A Chain A, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|B Chain B, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|C Chain C, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|D Chain D, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R4B|A Chain A, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Monoclinic Form
pdb|1R4B|B Chain B, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Monoclinic Form
Length = 204
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 23 TEYGVTPASHRNA---GNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCL 79
TEYG S +A G P+ F+ Y+ P P Q+ + R +S ++ +
Sbjct: 128 TEYGYISTSLMSAQFGGRPIVTKFKVTNGSKGGYIDPISYFPGQLEVLLPRNNSYYISDM 187
Query: 80 EFHPTNNHILLSG 92
+ P N I+++
Sbjct: 188 QISPNNRQIMITA 200
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 102
+ QV + R H+ +VTC+ P + + LS + ++ +WD
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+SL + H V S F+ SG + + D +LR WD
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287
+SL + H V S F+ SG + + D +LR WD
Sbjct: 293 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT---SQDNRLRIW 286
L S GND+ +IWD R + H V + + P S +L T + D ++ W
Sbjct: 232 LASGGNDNVVQIWDAR--SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 287 DSIFG 291
++ G
Sbjct: 290 NAATG 294
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 149
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 149
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 149
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 149
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|2YSA|A Chain A, Solution Structure Of The Zinc Finger Cchc Domain From
The Human Retinoblastoma-Binding Protein 6
(Retinoblastoma- Binding Q Protein 1, Rbq-1)
Length = 55
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 4 CFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFE 44
CF C PGH +CP + P ++ G P ++ E
Sbjct: 10 CFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMME 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,867,659
Number of Sequences: 62578
Number of extensions: 603284
Number of successful extensions: 1721
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 252
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)