Query 013086
Match_columns 449
No_of_seqs 697 out of 3965
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 00:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.1E-47 6.8E-52 313.5 24.8 312 60-411 102-456 (480)
2 KOG0271 Notchless-like WD40 re 100.0 4.8E-46 1E-50 306.6 25.9 301 54-392 138-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3E-45 6.5E-50 305.6 22.5 283 71-392 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 1.3E-41 2.7E-46 271.0 29.0 295 66-392 48-343 (343)
5 KOG0279 G protein beta subunit 100.0 2.4E-41 5.3E-46 267.7 28.6 292 66-394 8-313 (315)
6 KOG0315 G-protein beta subunit 100.0 3.8E-40 8.2E-45 256.7 28.4 295 86-414 10-308 (311)
7 KOG0265 U5 snRNP-specific prot 100.0 2.9E-39 6.3E-44 258.5 27.4 295 66-392 40-336 (338)
8 KOG0273 Beta-transducin family 100.0 2.1E-38 4.5E-43 268.3 27.1 315 69-415 174-504 (524)
9 KOG0279 G protein beta subunit 100.0 1.4E-37 3.1E-42 246.3 26.3 298 9-351 11-313 (315)
10 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-38 3.7E-43 265.3 19.7 259 114-411 172-435 (459)
11 KOG0645 WD40 repeat protein [G 100.0 2.6E-36 5.6E-41 238.3 29.9 291 65-394 6-311 (312)
12 KOG0285 Pleiotropic regulator 100.0 3.5E-37 7.6E-42 252.3 25.3 298 54-394 133-439 (460)
13 KOG0284 Polyadenylation factor 100.0 3.7E-38 7.9E-43 262.2 18.8 292 63-393 86-379 (464)
14 KOG0291 WD40-repeat-containing 100.0 5.7E-37 1.2E-41 273.8 26.8 311 57-405 291-623 (893)
15 KOG0282 mRNA splicing factor [ 100.0 4.2E-38 9.1E-43 267.5 17.7 296 62-392 203-503 (503)
16 KOG0315 G-protein beta subunit 100.0 8.1E-36 1.8E-40 232.6 26.6 278 56-368 23-305 (311)
17 KOG0316 Conserved WD40 repeat- 100.0 7.2E-36 1.6E-40 231.0 25.6 291 65-394 9-299 (307)
18 KOG0319 WD40-repeat-containing 100.0 1.2E-36 2.7E-41 271.1 24.4 321 54-408 85-591 (775)
19 KOG0293 WD40 repeat-containing 100.0 3E-36 6.6E-41 251.2 24.3 294 65-395 216-514 (519)
20 KOG0295 WD40 repeat-containing 100.0 2.3E-36 5E-41 248.0 22.5 297 57-393 92-405 (406)
21 KOG0318 WD40 repeat stress pro 100.0 6E-35 1.3E-39 250.7 31.9 313 58-394 175-602 (603)
22 KOG4328 WD40 protein [Function 100.0 1.5E-35 3.3E-40 250.3 27.3 321 54-395 167-496 (498)
23 KOG0296 Angio-associated migra 100.0 1.3E-35 2.9E-40 243.7 25.6 317 65-411 56-373 (399)
24 cd00200 WD40 WD40 domain, foun 100.0 4E-34 8.6E-39 252.7 33.8 287 66-392 2-289 (289)
25 KOG0291 WD40-repeat-containing 100.0 2.9E-34 6.2E-39 256.6 31.8 267 65-360 342-621 (893)
26 KOG0273 Beta-transducin family 100.0 1.4E-34 3E-39 245.2 28.1 277 74-394 236-523 (524)
27 KOG0266 WD40 repeat-containing 100.0 1.3E-34 2.9E-39 267.5 30.0 293 66-394 151-454 (456)
28 KOG0263 Transcription initiati 100.0 2.5E-35 5.3E-40 265.4 23.6 254 63-397 368-652 (707)
29 KOG0318 WD40 repeat stress pro 100.0 2.6E-33 5.7E-38 240.7 31.8 308 64-399 138-565 (603)
30 KOG0640 mRNA cleavage stimulat 100.0 1.1E-34 2.3E-39 233.5 20.7 312 57-393 96-425 (430)
31 PLN00181 protein SPA1-RELATED; 100.0 7.7E-33 1.7E-37 274.9 37.9 291 69-393 479-792 (793)
32 KOG0276 Vesicle coat complex C 100.0 6.1E-34 1.3E-38 249.4 26.1 311 67-416 7-320 (794)
33 KOG0286 G-protein beta subunit 100.0 2.9E-33 6.3E-38 223.4 26.8 268 111-414 49-323 (343)
34 KOG0643 Translation initiation 100.0 1.1E-33 2.3E-38 223.1 22.7 300 67-395 4-318 (327)
35 KOG0295 WD40 repeat-containing 100.0 2.2E-34 4.8E-39 236.4 19.5 280 114-421 105-391 (406)
36 KOG0263 Transcription initiati 100.0 2.5E-34 5.5E-39 258.9 20.7 211 63-291 441-651 (707)
37 KOG0284 Polyadenylation factor 100.0 1.3E-34 2.7E-39 241.2 16.0 248 67-351 132-380 (464)
38 KOG0296 Angio-associated migra 100.0 4.8E-33 1E-37 228.7 24.9 296 60-394 93-398 (399)
39 KOG0306 WD40-repeat-containing 100.0 8.3E-33 1.8E-37 247.2 25.9 294 62-395 362-665 (888)
40 KOG1407 WD40 repeat protein [F 100.0 2.3E-32 4.9E-37 214.9 25.2 286 67-394 14-311 (313)
41 KOG0278 Serine/threonine kinas 100.0 8.9E-34 1.9E-38 221.4 16.4 289 67-397 8-300 (334)
42 KOG0292 Vesicle coat complex C 100.0 8.8E-33 1.9E-37 251.2 24.4 295 69-400 5-327 (1202)
43 KOG0281 Beta-TrCP (transducin 100.0 1.1E-33 2.3E-38 231.2 13.9 276 72-399 196-482 (499)
44 KOG1446 Histone H3 (Lys4) meth 100.0 2E-30 4.3E-35 210.0 32.5 293 67-396 8-305 (311)
45 KOG0319 WD40-repeat-containing 100.0 6.5E-32 1.4E-36 241.2 25.2 298 65-397 315-622 (775)
46 KOG0275 Conserved WD40 repeat- 100.0 5.3E-33 1.1E-37 225.3 15.5 290 68-392 208-507 (508)
47 KOG0285 Pleiotropic regulator 100.0 9.9E-32 2.2E-36 220.4 22.6 250 112-401 146-396 (460)
48 KOG0772 Uncharacterized conser 100.0 2.4E-31 5.2E-36 228.2 25.8 310 66-391 160-484 (641)
49 KOG0268 Sof1-like rRNA process 100.0 6.3E-33 1.4E-37 227.8 14.2 316 39-399 33-350 (433)
50 KOG0283 WD40 repeat-containing 100.0 6.8E-32 1.5E-36 245.3 21.1 299 67-395 260-577 (712)
51 KOG0266 WD40 repeat-containing 100.0 2.4E-30 5.2E-35 239.2 29.2 256 116-405 158-420 (456)
52 KOG0316 Conserved WD40 repeat- 100.0 6E-31 1.3E-35 203.9 20.4 258 112-408 12-271 (307)
53 KOG0282 mRNA splicing factor [ 100.0 6.2E-32 1.3E-36 230.1 15.3 253 62-349 247-503 (503)
54 KOG0288 WD40 repeat protein Ti 100.0 7.3E-32 1.6E-36 225.2 15.3 290 64-392 166-459 (459)
55 KOG0277 Peroxisomal targeting 100.0 6.7E-31 1.5E-35 205.8 19.2 206 72-290 59-266 (311)
56 KOG0305 Anaphase promoting com 100.0 4E-30 8.6E-35 227.8 26.1 279 77-396 181-463 (484)
57 KOG0281 Beta-TrCP (transducin 100.0 1.1E-31 2.3E-36 219.5 14.7 266 49-356 213-482 (499)
58 KOG2096 WD40 repeat protein [G 100.0 1.5E-29 3.1E-34 204.8 26.0 314 63-397 76-405 (420)
59 KOG0265 U5 snRNP-specific prot 100.0 4.6E-30 1E-34 205.9 22.4 266 112-415 42-317 (338)
60 KOG1273 WD40 repeat protein [G 100.0 9.9E-30 2.2E-34 205.4 22.5 299 76-403 26-331 (405)
61 KOG0292 Vesicle coat complex C 100.0 8.4E-30 1.8E-34 232.0 24.1 293 54-396 32-350 (1202)
62 KOG0274 Cdc4 and related F-box 100.0 6.7E-29 1.5E-33 228.6 29.7 288 67-403 201-491 (537)
63 KOG0313 Microtubule binding pr 100.0 6.8E-29 1.5E-33 205.4 24.9 289 71-394 103-418 (423)
64 PTZ00421 coronin; Provisional 100.0 1.4E-28 3E-33 226.4 29.8 212 67-293 69-294 (493)
65 KOG0306 WD40-repeat-containing 100.0 1.7E-28 3.7E-33 219.8 28.0 315 64-408 98-594 (888)
66 KOG0645 WD40 repeat protein [G 100.0 4.9E-28 1.1E-32 191.7 26.9 255 64-351 51-311 (312)
67 KOG0276 Vesicle coat complex C 100.0 4.1E-29 8.8E-34 219.4 22.7 263 114-413 10-276 (794)
68 KOG0289 mRNA splicing factor [ 100.0 1.6E-28 3.4E-33 206.7 24.9 283 74-393 220-505 (506)
69 KOG0310 Conserved WD40 repeat- 100.0 2.1E-28 4.5E-33 209.0 25.8 283 73-395 26-310 (487)
70 KOG4283 Transcription-coupled 100.0 4.1E-28 8.8E-33 194.4 23.7 296 67-393 37-364 (397)
71 cd00200 WD40 WD40 domain, foun 100.0 1.5E-27 3.3E-32 210.6 28.7 260 114-411 6-266 (289)
72 PLN00181 protein SPA1-RELATED; 100.0 2.4E-27 5.1E-32 235.8 33.1 252 72-350 531-792 (793)
73 KOG0294 WD40 repeat-containing 100.0 9.2E-28 2E-32 194.1 23.4 247 63-396 33-283 (362)
74 PTZ00420 coronin; Provisional 100.0 5E-27 1.1E-31 217.0 31.0 216 63-292 64-296 (568)
75 KOG1446 Histone H3 (Lys4) meth 100.0 4E-27 8.8E-32 190.9 25.8 266 115-413 12-282 (311)
76 KOG0293 WD40 repeat-containing 100.0 3.5E-28 7.5E-33 203.3 19.7 280 113-428 220-504 (519)
77 KOG0264 Nucleosome remodeling 100.0 1.1E-27 2.3E-32 203.1 22.5 278 63-394 114-404 (422)
78 KOG0647 mRNA export protein (c 100.0 2.6E-27 5.7E-32 190.4 23.4 279 72-384 26-312 (347)
79 PTZ00420 coronin; Provisional 100.0 1.4E-26 2.9E-31 214.1 31.7 251 91-377 49-318 (568)
80 KOG1036 Mitotic spindle checkp 100.0 6.9E-27 1.5E-31 188.7 25.2 276 73-384 13-293 (323)
81 PTZ00421 coronin; Provisional 100.0 1.1E-26 2.4E-31 213.8 29.7 270 73-376 20-314 (493)
82 KOG0277 Peroxisomal targeting 100.0 3.9E-28 8.4E-33 190.4 15.8 212 63-288 94-308 (311)
83 KOG0283 WD40 repeat-containing 100.0 1.5E-27 3.3E-32 217.2 21.9 215 63-291 359-578 (712)
84 KOG0278 Serine/threonine kinas 100.0 2.3E-28 5.1E-33 191.2 13.8 251 65-356 51-302 (334)
85 KOG0973 Histone transcription 100.0 4E-27 8.7E-32 220.0 23.4 303 71-399 11-360 (942)
86 KOG0310 Conserved WD40 repeat- 100.0 3.4E-27 7.3E-32 201.7 19.2 262 117-415 26-289 (487)
87 KOG0313 Microtubule binding pr 100.0 7.7E-27 1.7E-31 193.3 20.5 207 67-288 187-417 (423)
88 KOG0274 Cdc4 and related F-box 100.0 2.1E-26 4.6E-31 212.1 25.2 265 58-368 233-499 (537)
89 KOG0289 mRNA splicing factor [ 100.0 5.2E-26 1.1E-30 191.6 24.8 216 59-289 247-462 (506)
90 KOG0275 Conserved WD40 repeat- 100.0 1.5E-27 3.2E-32 193.8 14.8 270 115-411 211-484 (508)
91 KOG1407 WD40 repeat protein [F 100.0 5.5E-26 1.2E-30 179.1 23.1 253 68-351 59-311 (313)
92 KOG0264 Nucleosome remodeling 100.0 1E-26 2.2E-31 197.2 20.1 233 41-289 150-404 (422)
93 KOG0772 Uncharacterized conser 100.0 1.2E-26 2.7E-31 199.4 20.6 251 73-349 214-485 (641)
94 KOG0300 WD40 repeat-containing 100.0 1.5E-26 3.2E-31 187.4 19.7 301 63-397 138-479 (481)
95 KOG0299 U3 snoRNP-associated p 100.0 1.1E-25 2.4E-30 191.0 24.9 293 61-392 130-454 (479)
96 KOG0640 mRNA cleavage stimulat 99.9 2.2E-26 4.7E-31 185.8 18.8 267 113-402 108-391 (430)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.8E-25 2.1E-29 194.2 31.5 282 87-404 2-289 (300)
98 KOG0305 Anaphase promoting com 99.9 8.2E-26 1.8E-30 200.5 23.9 244 70-353 214-463 (484)
99 KOG0641 WD40 repeat protein [G 99.9 3.7E-25 8E-30 171.0 24.1 262 60-351 76-349 (350)
100 KOG2055 WD40 repeat protein [G 99.9 3.2E-25 7E-30 188.3 25.1 293 73-394 213-512 (514)
101 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.3E-31 194.5 15.6 246 65-348 211-458 (459)
102 KOG1539 WD repeat protein [Gen 99.9 5.8E-25 1.3E-29 199.6 27.6 321 57-405 186-617 (910)
103 KOG1408 WD40 repeat protein [F 99.9 2.8E-25 6.1E-30 198.3 24.8 314 76-411 327-688 (1080)
104 KOG0301 Phospholipase A2-activ 99.9 2.8E-25 6.1E-30 197.7 24.5 282 63-394 4-288 (745)
105 KOG1274 WD40 repeat protein [G 99.9 6.8E-25 1.5E-29 201.3 27.6 277 70-391 10-297 (933)
106 KOG0268 Sof1-like rRNA process 99.9 2.3E-26 4.9E-31 189.4 15.7 260 55-357 91-351 (433)
107 KOG1408 WD40 repeat protein [F 99.9 1.2E-25 2.5E-30 200.8 21.0 300 65-396 361-715 (1080)
108 KOG0308 Conserved WD40 repeat- 99.9 4.6E-26 1E-30 201.2 18.1 287 72-394 20-327 (735)
109 KOG1274 WD40 repeat protein [G 99.9 1.1E-24 2.3E-29 200.0 27.0 251 114-395 10-263 (933)
110 KOG0643 Translation initiation 99.9 6.9E-25 1.5E-29 173.5 21.9 267 54-351 33-317 (327)
111 KOG0269 WD40 repeat-containing 99.9 9.9E-26 2.1E-30 203.0 19.2 298 74-403 40-349 (839)
112 KOG1332 Vesicle coat complex C 99.9 1.3E-25 2.8E-30 175.3 17.3 259 67-394 5-286 (299)
113 KOG0647 mRNA export protein (c 99.9 9.7E-25 2.1E-29 175.7 22.2 264 114-414 24-301 (347)
114 KOG0641 WD40 repeat protein [G 99.9 4.4E-23 9.5E-28 159.5 28.9 295 61-394 21-349 (350)
115 KOG0300 WD40 repeat-containing 99.9 5E-25 1.1E-29 178.6 18.9 267 56-353 173-478 (481)
116 KOG4227 WD40 repeat protein [G 99.9 1.6E-24 3.6E-29 180.5 22.4 333 35-393 16-386 (609)
117 KOG0308 Conserved WD40 repeat- 99.9 2.9E-25 6.3E-30 196.2 19.0 220 63-291 63-287 (735)
118 KOG0973 Histone transcription 99.9 2.1E-24 4.6E-29 201.9 24.9 294 116-426 12-358 (942)
119 KOG1539 WD repeat protein [Gen 99.9 9.1E-24 2E-28 191.9 26.4 302 65-395 236-649 (910)
120 KOG1188 WD40 repeat protein [G 99.9 9.2E-24 2E-28 173.0 23.2 287 87-393 41-345 (376)
121 KOG0639 Transducin-like enhanc 99.9 1.3E-24 2.7E-29 186.6 18.5 285 68-393 414-703 (705)
122 KOG1445 Tumor-specific antigen 99.9 2E-24 4.2E-29 190.6 19.6 130 64-203 70-204 (1012)
123 KOG0269 WD40 repeat-containing 99.9 3.1E-25 6.8E-30 199.8 14.7 202 75-290 89-297 (839)
124 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.6E-29 185.9 18.0 266 115-414 417-683 (705)
125 KOG0299 U3 snoRNP-associated p 99.9 9.6E-24 2.1E-28 179.4 22.0 253 114-396 139-412 (479)
126 KOG0650 WD40 repeat nucleolar 99.9 3.6E-23 7.9E-28 181.4 25.5 298 64-391 391-732 (733)
127 KOG1063 RNA polymerase II elon 99.9 1.3E-23 2.8E-28 187.2 22.7 306 63-396 181-650 (764)
128 KOG2445 Nuclear pore complex c 99.9 7.6E-23 1.6E-27 165.3 24.8 272 70-394 10-318 (361)
129 KOG0302 Ribosome Assembly prot 99.9 1.4E-23 3E-28 174.0 20.9 213 69-290 147-379 (440)
130 KOG1036 Mitotic spindle checkp 99.9 1.3E-22 2.8E-27 164.2 25.7 268 114-422 10-293 (323)
131 KOG0646 WD40 repeat protein [G 99.9 2.9E-23 6.2E-28 176.8 22.5 276 91-403 12-316 (476)
132 KOG2106 Uncharacterized conser 99.9 6.3E-22 1.4E-26 170.3 30.2 306 54-401 181-528 (626)
133 KOG2048 WD40 repeat protein [G 99.9 3.5E-22 7.7E-27 177.7 28.8 289 68-394 20-319 (691)
134 KOG0270 WD40 repeat-containing 99.9 6.4E-23 1.4E-27 173.7 21.1 191 87-290 193-405 (463)
135 KOG0321 WD40 repeat-containing 99.9 7.5E-23 1.6E-27 180.7 22.3 286 79-396 55-393 (720)
136 KOG1332 Vesicle coat complex C 99.9 2.7E-23 5.8E-28 162.5 17.1 215 64-289 47-286 (299)
137 KOG2106 Uncharacterized conser 99.9 1.2E-21 2.5E-26 168.6 28.1 299 67-393 281-625 (626)
138 KOG0302 Ribosome Assembly prot 99.9 1.3E-22 2.8E-27 168.3 19.6 219 61-287 199-436 (440)
139 KOG0294 WD40 repeat-containing 99.9 3.6E-22 7.9E-27 161.9 21.6 217 55-292 65-284 (362)
140 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.7E-26 159.4 24.2 282 76-386 52-361 (406)
141 KOG0270 WD40 repeat-containing 99.9 9.5E-23 2.1E-27 172.6 18.4 212 69-293 239-453 (463)
142 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 172.5 19.5 207 72-295 80-313 (476)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-21 7.3E-26 171.5 29.4 269 65-375 23-300 (300)
144 KOG0321 WD40 repeat-containing 99.9 9.1E-22 2E-26 174.0 20.4 268 66-353 93-393 (720)
145 KOG0267 Microtubule severing p 99.9 1.4E-23 2.9E-28 187.9 9.1 207 56-280 53-259 (825)
146 KOG0267 Microtubule severing p 99.9 1.6E-23 3.4E-28 187.5 9.1 228 67-320 22-249 (825)
147 KOG2048 WD40 repeat protein [G 99.9 6.3E-21 1.4E-25 169.9 24.1 252 116-397 24-278 (691)
148 KOG0303 Actin-binding protein 99.9 1.5E-21 3.3E-26 163.0 18.7 213 67-292 75-297 (472)
149 KOG1034 Transcriptional repres 99.9 3.4E-21 7.4E-26 157.2 19.3 302 67-394 32-383 (385)
150 KOG4283 Transcription-coupled 99.9 2.3E-20 5.1E-25 150.2 22.7 281 114-415 40-344 (397)
151 KOG0301 Phospholipase A2-activ 99.9 5.5E-21 1.2E-25 170.6 20.4 279 8-351 9-288 (745)
152 KOG1334 WD40 repeat protein [G 99.9 1.9E-21 4E-26 166.8 16.1 333 41-396 106-468 (559)
153 KOG1063 RNA polymerase II elon 99.9 2.6E-20 5.7E-25 166.3 23.9 322 65-412 46-413 (764)
154 KOG1273 WD40 repeat protein [G 99.9 3.3E-21 7.1E-26 156.4 16.3 252 120-406 26-292 (405)
155 KOG2055 WD40 repeat protein [G 99.9 7.3E-21 1.6E-25 162.0 18.8 265 116-415 212-491 (514)
156 KOG0307 Vesicle coat complex C 99.9 1.8E-21 4E-26 183.4 15.7 287 78-397 11-330 (1049)
157 KOG2096 WD40 repeat protein [G 99.9 5.2E-20 1.1E-24 149.8 21.0 272 113-411 82-378 (420)
158 KOG1007 WD repeat protein TSSC 99.9 3.3E-20 7.1E-25 148.9 19.5 284 65-394 55-361 (370)
159 KOG1009 Chromatin assembly com 99.9 2E-20 4.3E-25 157.0 18.6 302 73-399 13-377 (434)
160 KOG4328 WD40 protein [Function 99.9 2.3E-20 5E-25 158.9 19.1 266 114-407 183-463 (498)
161 KOG0322 G-protein beta subunit 99.9 2E-20 4.4E-25 148.2 16.2 294 66-393 7-322 (323)
162 KOG0644 Uncharacterized conser 99.9 2.4E-21 5.3E-26 176.3 11.9 290 62-399 179-473 (1113)
163 KOG4378 Nuclear protein COP1 [ 99.9 6E-20 1.3E-24 158.0 18.4 267 75-377 36-305 (673)
164 KOG0303 Actin-binding protein 99.8 5.2E-20 1.1E-24 153.9 16.7 215 114-397 78-297 (472)
165 KOG1538 Uncharacterized conser 99.8 1.1E-19 2.3E-24 161.9 19.7 276 75-397 14-296 (1081)
166 KOG4378 Nuclear protein COP1 [ 99.8 3.4E-20 7.4E-25 159.4 15.8 191 87-292 92-283 (673)
167 KOG1034 Transcriptional repres 99.8 1.2E-19 2.7E-24 148.2 17.3 227 59-289 121-383 (385)
168 PRK11028 6-phosphogluconolacto 99.8 6.4E-18 1.4E-22 151.8 30.4 280 88-394 4-304 (330)
169 KOG0307 Vesicle coat complex C 99.8 1.3E-20 2.9E-25 177.7 11.7 219 64-293 107-331 (1049)
170 KOG1240 Protein kinase contain 99.8 1E-18 2.3E-23 165.7 24.3 230 59-293 1034-1277(1431)
171 KOG1517 Guanine nucleotide bin 99.8 1.6E-18 3.5E-23 162.1 24.3 306 69-397 1060-1384(1387)
172 KOG2919 Guanine nucleotide-bin 99.8 1.3E-18 2.9E-23 141.9 20.3 262 120-405 52-339 (406)
173 KOG0649 WD40 repeat protein [G 99.8 6.2E-18 1.3E-22 132.7 22.9 279 75-391 12-313 (325)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-19 3.7E-24 157.6 14.8 275 67-405 288-572 (577)
175 KOG2445 Nuclear pore complex c 99.8 6.4E-18 1.4E-22 137.1 22.0 227 63-290 49-319 (361)
176 KOG0290 Conserved WD40 repeat- 99.8 2.6E-18 5.7E-23 138.2 18.9 209 71-291 94-320 (364)
177 KOG1587 Cytoplasmic dynein int 99.8 6.7E-18 1.4E-22 155.0 24.3 261 72-352 241-517 (555)
178 KOG1310 WD40 repeat protein [G 99.8 5.3E-19 1.1E-23 154.1 15.7 224 67-293 44-307 (758)
179 KOG0290 Conserved WD40 repeat- 99.8 2.4E-18 5.2E-23 138.4 18.1 206 71-285 148-361 (364)
180 KOG1963 WD40 repeat protein [G 99.8 3.2E-17 7E-22 151.0 27.9 298 71-396 203-540 (792)
181 KOG1587 Cytoplasmic dynein int 99.8 1E-17 2.2E-22 153.7 24.6 273 96-395 222-517 (555)
182 COG2319 FOG: WD40 repeat [Gene 99.8 3.4E-16 7.4E-21 146.7 35.3 294 63-395 145-443 (466)
183 KOG1007 WD repeat protein TSSC 99.8 6.3E-18 1.4E-22 135.9 18.5 212 64-288 113-360 (370)
184 KOG0650 WD40 repeat nucleolar 99.8 6.1E-18 1.3E-22 149.0 19.8 244 111-392 394-678 (733)
185 KOG2110 Uncharacterized conser 99.8 1E-16 2.3E-21 133.4 25.9 241 73-397 5-251 (391)
186 KOG2110 Uncharacterized conser 99.8 1.7E-16 3.6E-21 132.2 26.9 199 75-292 48-251 (391)
187 KOG0771 Prolactin regulatory e 99.8 1.8E-18 3.8E-23 146.4 14.4 201 77-290 148-355 (398)
188 KOG1963 WD40 repeat protein [G 99.8 7.4E-16 1.6E-20 142.2 32.2 321 57-394 41-487 (792)
189 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-15 4.8E-20 141.2 34.6 292 68-397 60-362 (466)
190 KOG1334 WD40 repeat protein [G 99.8 1.6E-17 3.4E-22 143.0 17.1 278 114-412 139-442 (559)
191 KOG1240 Protein kinase contain 99.8 2.6E-16 5.6E-21 149.8 24.8 276 101-399 1034-1339(1431)
192 KOG1188 WD40 repeat protein [G 99.8 1.9E-16 4.1E-21 130.5 20.8 206 131-362 41-253 (376)
193 KOG1445 Tumor-specific antigen 99.8 3.5E-17 7.5E-22 145.4 17.1 236 137-396 600-846 (1012)
194 KOG1538 Uncharacterized conser 99.8 2.6E-17 5.6E-22 147.0 16.1 252 58-351 38-293 (1081)
195 PF02239 Cytochrom_D1: Cytochr 99.8 9E-16 1.9E-20 137.3 25.9 294 89-406 9-359 (369)
196 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-17 7.1E-22 143.6 14.6 218 63-293 334-565 (577)
197 KOG1517 Guanine nucleotide bin 99.7 5.6E-16 1.2E-20 145.4 22.7 257 74-354 1110-1384(1387)
198 KOG2139 WD40 repeat protein [G 99.7 2.7E-15 6E-20 124.7 23.6 299 73-394 98-431 (445)
199 KOG4227 WD40 repeat protein [G 99.7 6E-16 1.3E-20 129.8 19.6 261 114-395 53-323 (609)
200 KOG0649 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 116.5 22.1 206 61-289 50-274 (325)
201 KOG1524 WD40 repeat-containing 99.7 5.8E-16 1.3E-20 135.0 18.5 264 71-391 12-283 (737)
202 KOG3881 Uncharacterized conser 99.7 1.1E-15 2.3E-20 128.4 19.0 218 67-293 99-324 (412)
203 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.8E-19 130.3 27.7 253 73-351 34-304 (330)
204 KOG1009 Chromatin assembly com 99.7 6.7E-16 1.4E-20 130.1 17.7 224 64-293 56-376 (434)
205 KOG1272 WD40-repeat-containing 99.7 7.5E-17 1.6E-21 138.0 12.3 197 75-293 131-327 (545)
206 KOG4497 Uncharacterized conser 99.7 2.2E-16 4.7E-21 129.5 13.7 190 79-289 14-240 (447)
207 KOG2111 Uncharacterized conser 99.7 2.1E-14 4.5E-19 117.6 24.9 238 76-395 8-257 (346)
208 KOG2321 WD40 repeat protein [G 99.7 1E-14 2.2E-19 128.4 24.0 283 71-392 49-341 (703)
209 KOG0644 Uncharacterized conser 99.7 4.1E-17 8.8E-22 149.2 8.4 251 114-409 187-442 (1113)
210 KOG3881 Uncharacterized conser 99.7 3.1E-15 6.6E-20 125.7 18.7 267 116-407 54-333 (412)
211 PRK01742 tolB translocation pr 99.7 2.4E-15 5.1E-20 139.3 20.2 235 95-376 183-426 (429)
212 KOG1523 Actin-related protein 99.7 2.8E-15 6E-20 122.7 17.9 214 68-292 5-239 (361)
213 KOG4497 Uncharacterized conser 99.7 4E-15 8.6E-20 122.2 17.7 295 74-400 49-397 (447)
214 KOG1524 WD40 repeat-containing 99.7 3E-15 6.5E-20 130.7 16.7 192 87-320 76-267 (737)
215 KOG1523 Actin-related protein 99.7 1.4E-14 3.1E-19 118.6 18.2 229 116-370 9-255 (361)
216 KOG1354 Serine/threonine prote 99.7 2.4E-14 5.3E-19 118.3 19.2 267 73-354 25-362 (433)
217 PRK01742 tolB translocation pr 99.6 3E-14 6.5E-19 132.0 20.7 200 65-289 195-401 (429)
218 KOG0322 G-protein beta subunit 99.6 6.3E-15 1.4E-19 117.4 13.6 225 58-288 40-322 (323)
219 KOG1310 WD40 repeat protein [G 99.6 5.4E-15 1.2E-19 129.5 14.4 167 114-289 47-231 (758)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 3.9E-14 8.4E-19 123.9 18.8 174 178-374 182-383 (636)
221 KOG2111 Uncharacterized conser 99.6 2.8E-13 6.1E-18 111.1 22.4 182 96-292 75-259 (346)
222 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.4E-19 123.7 14.5 201 173-395 148-355 (398)
223 KOG2139 WD40 repeat protein [G 99.6 3.1E-13 6.8E-18 112.6 22.6 201 72-289 139-383 (445)
224 PRK03629 tolB translocation pr 99.6 5.7E-13 1.2E-17 123.2 26.5 236 97-375 180-427 (429)
225 PRK03629 tolB translocation pr 99.6 1E-12 2.2E-17 121.5 25.9 202 66-289 191-406 (429)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 5E-14 1.1E-18 123.2 15.3 138 73-224 219-384 (636)
227 KOG2315 Predicted translation 99.6 2.3E-12 5.1E-17 113.6 25.1 277 74-394 35-390 (566)
228 PRK05137 tolB translocation pr 99.6 1.6E-12 3.5E-17 120.9 25.1 205 65-292 193-415 (435)
229 PRK04922 tolB translocation pr 99.6 1.4E-12 3E-17 121.2 23.9 237 96-375 184-432 (433)
230 KOG1409 Uncharacterized conser 99.6 4.4E-13 9.5E-18 111.1 17.1 257 2-293 13-274 (404)
231 PF02239 Cytochrom_D1: Cytochr 99.5 1.6E-11 3.4E-16 110.2 27.9 270 65-360 28-356 (369)
232 PRK02889 tolB translocation pr 99.5 3.9E-12 8.4E-17 117.8 24.0 239 96-376 176-425 (427)
233 PRK04922 tolB translocation pr 99.5 3.7E-12 8.1E-17 118.4 23.5 203 65-290 195-412 (433)
234 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.8E-17 105.5 18.1 149 121-289 9-179 (194)
235 PF10282 Lactonase: Lactonase, 99.5 4.5E-11 9.8E-16 107.5 29.0 281 96-398 13-328 (345)
236 PRK05137 tolB translocation pr 99.5 2.1E-11 4.6E-16 113.5 27.5 235 97-375 183-432 (435)
237 PF08662 eIF2A: Eukaryotic tra 99.5 2.5E-12 5.4E-17 104.6 18.3 150 77-245 9-179 (194)
238 KOG2314 Translation initiation 99.5 5.5E-12 1.2E-16 111.1 20.4 283 77-395 214-574 (698)
239 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.8E-10 3.8E-15 101.0 29.8 286 96-402 27-338 (352)
240 KOG1272 WD40-repeat-containing 99.5 1.4E-14 3E-19 124.4 3.9 199 172-402 132-331 (545)
241 PRK02889 tolB translocation pr 99.5 8.6E-12 1.9E-16 115.5 21.5 200 66-288 188-402 (427)
242 KOG0280 Uncharacterized conser 99.5 2.4E-11 5.3E-16 98.8 21.0 276 95-398 45-337 (339)
243 KOG1354 Serine/threonine prote 99.5 1.1E-11 2.3E-16 103.0 19.0 265 116-397 24-362 (433)
244 KOG2321 WD40 repeat protein [G 99.5 3.7E-12 8.1E-17 112.6 16.8 204 78-290 138-344 (703)
245 KOG1832 HIV-1 Vpr-binding prot 99.5 4.5E-14 9.8E-19 130.6 5.1 207 59-295 1087-1297(1516)
246 COG2706 3-carboxymuconate cycl 99.5 7.5E-10 1.6E-14 93.3 29.3 282 95-397 15-326 (346)
247 KOG0974 WD-repeat protein WDR6 99.4 3.8E-12 8.3E-17 120.2 16.4 276 74-396 8-290 (967)
248 COG5354 Uncharacterized protei 99.4 1.2E-10 2.7E-15 101.8 23.6 287 72-398 31-399 (561)
249 TIGR02800 propeller_TolB tol-p 99.4 5.5E-11 1.2E-15 110.9 23.2 200 66-288 182-396 (417)
250 TIGR02800 propeller_TolB tol-p 99.4 2.3E-10 4.9E-15 106.8 26.1 175 97-292 171-357 (417)
251 PRK01029 tolB translocation pr 99.4 2.9E-10 6.2E-15 104.9 25.9 244 97-377 166-426 (428)
252 PRK04792 tolB translocation pr 99.4 2.2E-10 4.7E-15 106.5 25.2 236 97-375 199-446 (448)
253 PRK00178 tolB translocation pr 99.4 3.8E-10 8.2E-15 105.4 26.5 236 97-375 180-427 (430)
254 PRK00178 tolB translocation pr 99.4 3.8E-10 8.2E-15 105.4 24.9 203 65-289 190-406 (430)
255 KOG1064 RAVE (regulator of V-A 99.4 1.1E-11 2.3E-16 123.2 14.5 198 69-295 2204-2404(2439)
256 PRK01029 tolB translocation pr 99.4 7.2E-10 1.6E-14 102.2 25.0 210 67-293 178-407 (428)
257 KOG1064 RAVE (regulator of V-A 99.3 1.4E-11 3E-16 122.5 13.8 220 93-362 2187-2409(2439)
258 PRK04792 tolB translocation pr 99.3 6E-10 1.3E-14 103.6 24.0 201 67-289 211-425 (448)
259 TIGR03300 assembly_YfgL outer 99.3 1.2E-09 2.6E-14 100.2 24.0 274 88-406 67-350 (377)
260 KOG2041 WD40 repeat protein [G 99.3 3.3E-10 7.2E-15 103.2 19.5 286 73-387 14-330 (1189)
261 KOG4532 WD40-like repeat conta 99.3 1E-09 2.2E-14 88.4 19.5 206 78-293 72-286 (344)
262 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 92.1 29.0 264 75-359 38-332 (345)
263 KOG4190 Uncharacterized conser 99.3 1.3E-11 2.7E-16 109.0 8.8 217 63-293 725-952 (1034)
264 KOG4714 Nucleoporin [Nuclear s 99.3 2.8E-10 6.2E-15 91.1 14.7 199 76-290 39-255 (319)
265 PLN02919 haloacid dehalogenase 99.3 1.3E-08 2.8E-13 103.6 30.4 211 77-292 571-836 (1057)
266 KOG1409 Uncharacterized conser 99.3 3.3E-09 7.2E-14 88.5 21.2 212 64-289 15-227 (404)
267 KOG0974 WD-repeat protein WDR6 99.2 4.5E-10 9.9E-15 106.5 16.9 196 75-292 89-291 (967)
268 PF04762 IKI3: IKI3 family; I 99.2 2.5E-08 5.4E-13 99.7 29.4 305 72-395 74-457 (928)
269 KOG4547 WD40 repeat-containing 99.2 4.3E-10 9.2E-15 100.4 14.9 193 179-395 3-221 (541)
270 KOG4547 WD40 repeat-containing 99.2 3.7E-09 8E-14 94.5 20.3 189 87-290 6-221 (541)
271 KOG0280 Uncharacterized conser 99.2 1.3E-09 2.8E-14 89.0 15.8 203 76-291 124-335 (339)
272 KOG1912 WD40 repeat protein [G 99.2 5E-09 1.1E-13 96.6 21.4 213 65-290 47-305 (1062)
273 KOG0882 Cyclophilin-related pe 99.2 3.9E-10 8.4E-15 97.3 13.4 216 72-300 8-242 (558)
274 COG4946 Uncharacterized protei 99.2 2.9E-08 6.3E-13 86.6 24.4 170 87-278 333-507 (668)
275 TIGR03300 assembly_YfgL outer 99.2 8.6E-08 1.9E-12 88.0 28.7 264 88-391 107-376 (377)
276 COG2706 3-carboxymuconate cycl 99.2 7.2E-07 1.6E-11 75.7 30.3 219 69-290 35-275 (346)
277 KOG4190 Uncharacterized conser 99.1 4.7E-10 1E-14 99.3 11.7 239 114-392 732-986 (1034)
278 PLN02919 haloacid dehalogenase 99.1 5.4E-08 1.2E-12 99.2 27.8 216 76-293 626-892 (1057)
279 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.4E-07 3E-12 83.0 26.4 246 81-359 53-338 (352)
280 COG5170 CDC55 Serine/threonine 99.1 3E-09 6.5E-14 87.6 14.6 217 73-292 26-312 (460)
281 KOG2315 Predicted translation 99.1 3.4E-08 7.3E-13 87.9 22.2 198 71-289 163-390 (566)
282 PF15492 Nbas_N: Neuroblastoma 99.1 2.8E-07 6.1E-12 75.7 25.3 243 123-408 3-273 (282)
283 KOG0309 Conserved WD40 repeat- 99.1 9.8E-10 2.1E-14 100.5 11.5 185 75-271 69-257 (1081)
284 PF04762 IKI3: IKI3 family; I 99.1 7.5E-07 1.6E-11 89.4 31.8 214 67-292 204-459 (928)
285 KOG3914 WD repeat protein WDR4 99.0 7E-09 1.5E-13 88.5 14.2 161 120-295 65-229 (390)
286 KOG4532 WD40-like repeat conta 99.0 1.8E-07 3.8E-12 75.8 20.7 267 95-395 51-332 (344)
287 KOG1645 RING-finger-containing 99.0 4.9E-08 1.1E-12 83.4 18.5 272 98-395 175-462 (463)
288 COG4946 Uncharacterized protei 99.0 3E-07 6.5E-12 80.5 22.5 191 82-293 275-481 (668)
289 PRK04043 tolB translocation pr 99.0 4E-07 8.6E-12 83.7 24.5 191 75-289 189-400 (419)
290 KOG4714 Nucleoporin [Nuclear s 99.0 6.1E-09 1.3E-13 83.6 10.4 166 67-246 83-255 (319)
291 KOG3914 WD repeat protein WDR4 99.0 1.5E-08 3.2E-13 86.6 13.1 167 172-360 65-232 (390)
292 PF13360 PQQ_2: PQQ-like domai 99.0 4.8E-07 1E-11 77.3 22.9 225 95-358 2-237 (238)
293 PRK11138 outer membrane biogen 98.9 5.8E-07 1.2E-11 82.9 23.3 272 88-403 71-362 (394)
294 PRK04043 tolB translocation pr 98.9 2.7E-06 5.9E-11 78.2 27.1 173 97-293 170-361 (419)
295 PF15492 Nbas_N: Neuroblastoma 98.9 1E-06 2.3E-11 72.5 21.5 194 76-293 46-263 (282)
296 KOG2041 WD40 repeat protein [G 98.9 2.3E-08 5E-13 91.6 11.9 199 67-280 65-279 (1189)
297 KOG1832 HIV-1 Vpr-binding prot 98.9 1.9E-09 4.1E-14 100.8 4.8 157 114-292 1098-1258(1516)
298 PF00400 WD40: WD domain, G-be 98.9 7.6E-09 1.6E-13 59.9 5.8 38 64-102 2-39 (39)
299 KOG2314 Translation initiation 98.9 1.4E-06 3E-11 77.9 22.1 226 75-334 251-553 (698)
300 KOG0309 Conserved WD40 repeat- 98.9 1.7E-08 3.8E-13 92.6 10.6 212 67-290 108-340 (1081)
301 PRK11138 outer membrane biogen 98.8 5.5E-06 1.2E-10 76.4 26.9 265 88-393 122-393 (394)
302 KOG2695 WD40 repeat protein [G 98.8 1.6E-08 3.5E-13 84.6 8.5 151 134-295 228-382 (425)
303 COG5170 CDC55 Serine/threonine 98.8 6.5E-08 1.4E-12 79.9 11.4 235 116-402 25-318 (460)
304 KOG2695 WD40 repeat protein [G 98.8 1.5E-08 3.3E-13 84.7 7.4 145 90-249 228-380 (425)
305 COG5354 Uncharacterized protei 98.8 2.8E-06 6E-11 75.3 21.1 204 99-328 15-241 (561)
306 PF13360 PQQ_2: PQQ-like domai 98.8 9.7E-07 2.1E-11 75.5 18.5 230 139-400 2-236 (238)
307 PF08450 SGL: SMP-30/Gluconola 98.8 2.9E-05 6.2E-10 66.6 27.5 199 78-293 4-216 (246)
308 KOG1645 RING-finger-containing 98.8 8.9E-07 1.9E-11 76.0 16.5 84 66-151 186-269 (463)
309 KOG2066 Vacuolar assembly/sort 98.7 2.9E-07 6.3E-12 85.8 14.5 186 73-289 39-233 (846)
310 PF08450 SGL: SMP-30/Gluconola 98.7 1.1E-05 2.5E-10 69.1 23.5 223 121-380 3-240 (246)
311 KOG1008 Uncharacterized conser 98.7 4.2E-09 9.2E-14 95.1 2.0 204 74-290 57-276 (783)
312 PF07433 DUF1513: Protein of u 98.7 3.3E-05 7E-10 65.9 24.6 246 119-394 6-285 (305)
313 KOG0882 Cyclophilin-related pe 98.7 5.4E-07 1.2E-11 78.4 12.9 234 115-407 7-244 (558)
314 KOG2066 Vacuolar assembly/sort 98.7 1.1E-06 2.4E-11 82.0 15.4 174 117-320 39-216 (846)
315 KOG1912 WD40 repeat protein [G 98.6 2.8E-06 6E-11 79.1 17.0 271 75-395 17-305 (1062)
316 cd00216 PQQ_DH Dehydrogenases 98.6 2.2E-05 4.8E-10 74.3 23.6 297 88-407 63-437 (488)
317 PF07433 DUF1513: Protein of u 98.6 6.9E-05 1.5E-09 63.9 23.7 206 76-295 7-253 (305)
318 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00021 4.5E-09 58.4 25.2 113 80-205 17-129 (354)
319 KOG1920 IkappaB kinase complex 98.6 2.4E-05 5.3E-10 76.8 22.9 210 73-291 68-324 (1265)
320 PF06433 Me-amine-dh_H: Methyl 98.6 3.4E-05 7.5E-10 66.5 21.5 287 96-404 17-330 (342)
321 cd00216 PQQ_DH Dehydrogenases 98.6 0.0001 2.2E-09 69.8 26.5 268 88-380 112-452 (488)
322 PF00400 WD40: WD domain, G-be 98.6 3.1E-07 6.7E-12 53.0 6.1 37 108-146 3-39 (39)
323 KOG2114 Vacuolar assembly/sort 98.5 2.8E-05 6.1E-10 73.6 21.5 203 75-290 27-244 (933)
324 KOG1275 PAB-dependent poly(A) 98.5 1.9E-06 4.1E-11 81.6 13.9 152 75-244 179-341 (1118)
325 KOG3621 WD40 repeat-containing 98.5 1.9E-05 4E-10 73.1 19.7 155 73-234 33-188 (726)
326 KOG1275 PAB-dependent poly(A) 98.5 4E-06 8.7E-11 79.5 15.7 182 88-288 149-341 (1118)
327 PF06977 SdiA-regulated: SdiA- 98.5 0.00011 2.4E-09 61.7 22.5 212 67-286 15-247 (248)
328 PF11768 DUF3312: Protein of u 98.5 6.2E-05 1.3E-09 68.7 21.1 94 193-291 238-331 (545)
329 PF11768 DUF3312: Protein of u 98.5 0.00053 1.2E-08 62.8 26.5 124 210-355 201-333 (545)
330 KOG1920 IkappaB kinase complex 98.4 5.7E-05 1.2E-09 74.4 21.0 201 170-395 69-323 (1265)
331 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0014 3E-08 62.5 29.8 306 88-407 71-503 (527)
332 PRK02888 nitrous-oxide reducta 98.4 8.5E-05 1.8E-09 69.5 20.8 233 84-352 140-405 (635)
333 PF14583 Pectate_lyase22: Olig 98.4 0.00026 5.6E-09 62.5 21.9 198 80-292 42-275 (386)
334 PF00780 CNH: CNH domain; Int 98.3 0.00043 9.4E-09 60.5 23.2 241 87-363 8-267 (275)
335 KOG3617 WD40 and TPR repeat-co 98.3 4.7E-06 1E-10 78.5 11.0 71 76-149 62-132 (1416)
336 KOG2114 Vacuolar assembly/sort 98.3 0.00019 4E-09 68.3 19.8 155 124-289 30-201 (933)
337 PF08553 VID27: VID27 cytoplas 98.3 0.00061 1.3E-08 66.4 23.8 145 130-289 493-647 (794)
338 COG3391 Uncharacterized conser 98.2 0.0011 2.3E-08 60.7 22.8 202 77-293 77-287 (381)
339 PRK02888 nitrous-oxide reducta 98.2 0.00018 3.8E-09 67.5 17.4 96 140-246 296-405 (635)
340 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0065 1.4E-07 56.1 28.4 178 97-291 62-248 (410)
341 PF00780 CNH: CNH domain; Int 98.1 0.0023 4.9E-08 56.0 23.4 248 130-413 7-274 (275)
342 PF03178 CPSF_A: CPSF A subuni 98.1 0.0012 2.6E-08 59.1 21.9 185 87-286 43-262 (321)
343 PF06977 SdiA-regulated: SdiA- 98.1 0.003 6.5E-08 53.2 22.1 165 114-288 18-200 (248)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0074 1.6E-07 57.6 27.5 156 89-249 123-337 (527)
345 KOG1008 Uncharacterized conser 98.1 2.6E-06 5.7E-11 77.6 3.8 209 117-351 56-275 (783)
346 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0043 9.3E-08 51.0 20.3 144 127-288 20-164 (354)
347 PF04053 Coatomer_WDAD: Coatom 98.0 0.0036 7.7E-08 57.9 22.7 143 116-289 31-173 (443)
348 COG0823 TolB Periplasmic compo 98.0 0.00045 9.7E-09 63.4 16.6 194 67-280 186-390 (425)
349 PF02897 Peptidase_S9_N: Proly 98.0 0.015 3.3E-07 54.2 28.4 201 75-289 125-357 (414)
350 COG3204 Uncharacterized protei 97.9 0.0052 1.1E-07 51.7 19.4 177 68-246 80-264 (316)
351 PF02897 Peptidase_S9_N: Proly 97.9 0.013 2.8E-07 54.8 24.7 249 120-398 126-408 (414)
352 PF08596 Lgl_C: Lethal giant l 97.9 0.0084 1.8E-07 54.7 22.4 211 75-292 3-293 (395)
353 COG3391 Uncharacterized conser 97.9 0.019 4.2E-07 52.6 26.7 272 98-403 13-292 (381)
354 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0029 6.3E-08 45.0 15.2 101 76-194 2-109 (111)
355 KOG3621 WD40 repeat-containing 97.8 0.0002 4.3E-09 66.6 10.9 116 172-290 36-155 (726)
356 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0094 2E-07 54.2 21.9 269 95-394 22-315 (353)
357 PF03178 CPSF_A: CPSF A subuni 97.7 0.013 2.8E-07 52.5 21.2 178 97-289 3-202 (321)
358 KOG4640 Anaphase-promoting com 97.7 0.00018 3.9E-09 66.0 8.9 95 117-224 20-115 (665)
359 smart00320 WD40 WD40 repeats. 97.7 9.1E-05 2E-09 42.0 4.9 37 65-102 4-40 (40)
360 KOG2395 Protein involved in va 97.7 0.0025 5.5E-08 57.7 15.6 143 132-289 348-500 (644)
361 KOG3617 WD40 and TPR repeat-co 97.7 0.00022 4.8E-09 67.7 9.4 110 120-245 18-131 (1416)
362 PF08596 Lgl_C: Lethal giant l 97.6 0.0021 4.5E-08 58.5 14.0 212 65-287 78-333 (395)
363 KOG4640 Anaphase-promoting com 97.6 0.00044 9.5E-09 63.6 9.3 79 74-156 21-100 (665)
364 COG0823 TolB Periplasmic compo 97.6 0.0051 1.1E-07 56.6 16.0 158 116-292 191-361 (425)
365 PF08553 VID27: VID27 cytoplas 97.5 0.0047 1E-07 60.5 15.7 142 93-244 501-646 (794)
366 PF04053 Coatomer_WDAD: Coatom 97.5 0.018 3.9E-07 53.3 18.5 185 67-285 26-219 (443)
367 PRK13616 lipoprotein LpqB; Pro 97.4 0.038 8.2E-07 53.4 20.6 199 74-283 350-562 (591)
368 COG3204 Uncharacterized protei 97.3 0.069 1.5E-06 45.2 17.9 199 79-289 48-263 (316)
369 PF06433 Me-amine-dh_H: Methyl 97.3 0.1 2.2E-06 45.7 20.7 201 79-294 100-325 (342)
370 KOG2444 WD40 repeat protein [G 97.3 0.00047 1E-08 55.4 5.1 140 229-399 32-171 (238)
371 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.036 7.7E-07 39.6 15.0 100 172-284 2-109 (111)
372 PF05096 Glu_cyclase_2: Glutam 97.3 0.092 2E-06 44.3 22.1 186 75-278 46-249 (264)
373 KOG4441 Proteins containing BT 97.3 0.062 1.3E-06 51.9 19.9 190 87-293 286-503 (571)
374 smart00320 WD40 WD40 repeats. 97.2 0.0013 2.8E-08 36.9 5.4 32 114-146 9-40 (40)
375 TIGR03074 PQQ_membr_DH membran 97.2 0.21 4.6E-06 49.8 22.9 245 130-404 194-487 (764)
376 PHA02713 hypothetical protein; 97.1 0.024 5.2E-07 54.8 15.7 189 87-293 305-537 (557)
377 KOG2444 WD40 repeat protein [G 97.1 0.0011 2.3E-08 53.4 5.1 140 133-289 33-177 (238)
378 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.18 4E-06 45.8 20.3 268 73-382 42-344 (353)
379 COG3386 Gluconolactonase [Carb 97.0 0.19 4.2E-06 44.1 21.5 227 122-383 29-273 (307)
380 COG3490 Uncharacterized protei 97.0 0.17 3.6E-06 42.7 22.1 177 80-278 42-244 (366)
381 KOG2079 Vacuolar assembly/sort 97.0 0.0036 7.7E-08 61.6 8.8 100 87-193 100-199 (1206)
382 COG3386 Gluconolactonase [Carb 97.0 0.22 4.9E-06 43.8 20.6 199 79-293 30-246 (307)
383 KOG3630 Nuclear pore complex, 97.0 0.014 3.1E-07 58.0 12.3 116 172-289 103-228 (1405)
384 KOG2079 Vacuolar assembly/sort 96.9 0.0056 1.2E-07 60.3 9.3 105 180-289 98-203 (1206)
385 PF05694 SBP56: 56kDa selenium 96.9 0.19 4.1E-06 45.5 17.9 187 82-278 138-392 (461)
386 KOG4441 Proteins containing BT 96.9 0.16 3.4E-06 49.2 19.0 148 130-293 285-456 (571)
387 PF14583 Pectate_lyase22: Olig 96.9 0.33 7.1E-06 43.5 21.5 253 102-385 16-303 (386)
388 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0075 1.6E-07 35.8 5.8 31 258-288 10-40 (47)
389 PF15390 DUF4613: Domain of un 96.8 0.48 1E-05 44.4 23.8 143 71-223 54-211 (671)
390 COG5276 Uncharacterized conser 96.8 0.28 6.2E-06 41.6 18.8 158 116-290 85-242 (370)
391 PHA02713 hypothetical protein; 96.7 0.12 2.6E-06 50.1 16.6 52 344-399 481-538 (557)
392 COG3490 Uncharacterized protei 96.7 0.11 2.4E-06 43.7 13.7 194 80-288 120-347 (366)
393 PF04841 Vps16_N: Vps16, N-ter 96.7 0.55 1.2E-05 43.6 22.1 182 73-271 80-271 (410)
394 KOG1897 Damage-specific DNA bi 96.6 0.85 1.8E-05 45.5 30.8 296 89-403 502-865 (1096)
395 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0084 1.8E-07 35.5 5.0 35 116-152 10-44 (47)
396 KOG1897 Damage-specific DNA bi 96.6 0.7 1.5E-05 46.0 20.1 197 75-286 776-1001(1096)
397 KOG1916 Nuclear protein, conta 96.6 0.00032 7E-09 67.1 -1.7 154 95-289 110-265 (1283)
398 PF15390 DUF4613: Domain of un 96.5 0.14 3.1E-06 47.7 14.8 153 118-289 20-186 (671)
399 PF10647 Gmad1: Lipoprotein Lp 96.5 0.47 1E-05 40.7 17.9 149 119-281 25-187 (253)
400 PHA03098 kelch-like protein; P 96.4 0.26 5.7E-06 47.8 17.2 187 87-292 296-514 (534)
401 PF10647 Gmad1: Lipoprotein Lp 96.3 0.64 1.4E-05 39.9 20.6 151 75-237 25-187 (253)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.95 2.1E-05 41.6 26.9 36 260-295 308-343 (415)
403 PRK13616 lipoprotein LpqB; Pro 96.2 0.34 7.3E-06 47.1 16.4 150 117-288 349-524 (591)
404 TIGR03118 PEPCTERM_chp_1 conse 96.1 0.75 1.6E-05 39.5 20.3 221 172-406 25-291 (336)
405 KOG2395 Protein involved in va 96.1 0.15 3.2E-06 46.8 12.4 146 88-245 348-500 (644)
406 TIGR03074 PQQ_membr_DH membran 96.1 1.8 4E-05 43.4 22.3 208 88-296 196-484 (764)
407 KOG4499 Ca2+-binding protein R 96.1 0.31 6.8E-06 39.9 12.7 110 117-232 157-271 (310)
408 PF05694 SBP56: 56kDa selenium 96.0 1.2 2.5E-05 40.7 17.2 197 87-291 89-344 (461)
409 PHA02790 Kelch-like protein; P 96.0 0.62 1.3E-05 44.4 16.9 184 87-291 273-472 (480)
410 PF14870 PSII_BNR: Photosynthe 95.9 1.1 2.4E-05 39.3 18.4 159 72-242 143-301 (302)
411 PF14870 PSII_BNR: Photosynthe 95.9 1.1 2.4E-05 39.3 21.2 158 114-286 141-301 (302)
412 PF08728 CRT10: CRT10; InterP 95.9 0.97 2.1E-05 44.2 17.4 116 172-288 103-245 (717)
413 PF10313 DUF2415: Uncharacteri 95.5 0.076 1.6E-06 30.5 5.2 33 118-150 1-35 (43)
414 PRK10115 protease 2; Provision 95.4 3.3 7.1E-05 41.5 24.7 198 74-289 127-344 (686)
415 PF08728 CRT10: CRT10; InterP 95.4 1.1 2.4E-05 43.8 15.8 157 87-244 50-245 (717)
416 PF14761 HPS3_N: Hermansky-Pud 95.3 1.3 2.7E-05 36.2 13.7 106 182-292 29-166 (215)
417 TIGR03118 PEPCTERM_chp_1 conse 95.3 1.7 3.7E-05 37.4 21.5 208 76-294 25-284 (336)
418 COG3823 Glutamine cyclotransfe 95.2 1.3 2.9E-05 35.7 13.8 174 87-277 57-247 (262)
419 KOG4499 Ca2+-binding protein R 95.0 1.6 3.5E-05 35.9 16.9 231 124-382 21-271 (310)
420 COG5167 VID27 Protein involved 95.0 0.84 1.8E-05 42.0 12.8 144 130-289 479-632 (776)
421 KOG2280 Vacuolar assembly/sort 94.9 4.1 8.8E-05 39.7 18.8 205 74-293 44-250 (829)
422 PF10313 DUF2415: Uncharacteri 94.6 0.2 4.4E-06 28.8 5.4 31 216-246 2-34 (43)
423 PHA03098 kelch-like protein; P 94.4 3 6.5E-05 40.6 16.7 149 130-293 295-468 (534)
424 KOG3630 Nuclear pore complex, 94.3 0.23 4.9E-06 50.0 8.5 152 67-232 93-260 (1405)
425 PF10168 Nup88: Nuclear pore c 94.3 1.4 3.1E-05 43.8 14.0 75 215-291 85-181 (717)
426 TIGR02604 Piru_Ver_Nterm putat 94.3 4.2 9.1E-05 37.3 16.4 149 74-234 14-202 (367)
427 PF12234 Rav1p_C: RAVE protein 94.2 2.4 5.3E-05 41.1 14.7 116 75-199 31-156 (631)
428 PF12234 Rav1p_C: RAVE protein 93.9 1.3 2.8E-05 42.9 12.3 111 174-288 34-155 (631)
429 PF05096 Glu_cyclase_2: Glutam 93.8 3.8 8.2E-05 34.9 19.6 159 117-293 44-207 (264)
430 COG3823 Glutamine cyclotransfe 93.8 3 6.5E-05 33.8 13.4 108 130-253 56-166 (262)
431 PF07995 GSDH: Glucose / Sorbo 93.8 4.9 0.00011 36.1 23.2 111 119-235 3-133 (331)
432 COG5276 Uncharacterized conser 93.8 4 8.7E-05 35.0 27.3 195 74-289 87-285 (370)
433 TIGR02604 Piru_Ver_Nterm putat 93.3 6 0.00013 36.2 15.6 161 216-384 15-202 (367)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 93.3 2.5 5.4E-05 38.9 12.7 93 65-159 299-409 (415)
435 PF10168 Nup88: Nuclear pore c 93.1 10 0.00023 37.9 23.8 84 118-204 85-184 (717)
436 KOG1900 Nuclear pore complex, 93.1 3.6 7.9E-05 42.7 14.4 170 72-246 77-273 (1311)
437 PF14761 HPS3_N: Hermansky-Pud 93.0 4.4 9.4E-05 33.2 16.6 144 131-288 29-213 (215)
438 KOG2377 Uncharacterized conser 92.8 4.4 9.6E-05 37.0 13.1 145 76-233 25-171 (657)
439 PF10214 Rrn6: RNA polymerase 92.8 11 0.00025 38.4 17.9 173 71-247 77-278 (765)
440 PRK13684 Ycf48-like protein; P 92.6 7.6 0.00017 35.0 17.6 158 73-244 172-330 (334)
441 KOG1983 Tomosyn and related SN 92.5 4.1 8.8E-05 42.5 14.4 73 74-148 36-108 (993)
442 PF13449 Phytase-like: Esteras 92.4 7.8 0.00017 34.8 23.8 156 73-232 19-231 (326)
443 PLN02193 nitrile-specifier pro 92.3 11 0.00023 36.0 18.2 109 130-247 229-353 (470)
444 KOG1900 Nuclear pore complex, 92.1 2.4 5.2E-05 43.9 11.8 160 116-290 77-273 (1311)
445 TIGR03606 non_repeat_PQQ dehyd 91.9 11 0.00024 35.3 16.0 67 61-128 17-89 (454)
446 PLN02153 epithiospecifier prot 91.3 11 0.00024 34.1 18.1 64 87-153 34-114 (341)
447 PF07569 Hira: TUP1-like enhan 90.9 2.5 5.4E-05 35.3 9.2 70 130-200 22-96 (219)
448 KOG4460 Nuclear pore complex, 90.9 3.3 7.2E-05 38.5 10.3 76 216-292 105-201 (741)
449 KOG1898 Splicing factor 3b, su 90.9 21 0.00046 36.6 20.9 73 73-145 582-668 (1205)
450 KOG2247 WD40 repeat-containing 90.8 0.052 1.1E-06 49.2 -0.9 149 116-284 33-183 (615)
451 PRK13684 Ycf48-like protein; P 90.8 12 0.00027 33.7 17.5 157 117-288 172-330 (334)
452 PHA02790 Kelch-like protein; P 90.7 7.8 0.00017 37.1 13.5 143 84-245 318-470 (480)
453 PF07569 Hira: TUP1-like enhan 90.6 1.8 4E-05 36.1 8.2 67 177-245 18-95 (219)
454 PF07676 PD40: WD40-like Beta 90.4 1.4 2.9E-05 24.8 5.2 33 69-101 4-38 (39)
455 KOG2377 Uncharacterized conser 90.2 9.3 0.0002 35.1 12.3 117 171-292 68-188 (657)
456 PF07995 GSDH: Glucose / Sorbo 89.7 15 0.00033 33.1 22.2 108 76-188 4-132 (331)
457 PF14727 PHTB1_N: PTHB1 N-term 89.6 17 0.00037 33.7 28.9 151 83-245 34-204 (418)
458 PF14727 PHTB1_N: PTHB1 N-term 89.6 17 0.00038 33.7 23.4 149 128-289 35-204 (418)
459 COG5167 VID27 Protein involved 89.3 18 0.00038 33.9 13.4 144 88-245 482-632 (776)
460 TIGR03548 mutarot_permut cycli 88.9 17 0.00036 32.6 16.3 106 87-202 74-197 (323)
461 KOG4460 Nuclear pore complex, 88.6 16 0.00034 34.3 12.7 32 216-247 167-200 (741)
462 TIGR02276 beta_rpt_yvtn 40-res 88.3 3.1 6.7E-05 23.6 5.8 31 83-113 1-31 (42)
463 KOG1896 mRNA cleavage and poly 88.1 21 0.00046 37.2 14.3 144 87-245 1047-1213(1366)
464 PF11715 Nup160: Nucleoporin N 86.7 2.8 6E-05 40.9 7.8 68 226-293 157-252 (547)
465 TIGR03548 mutarot_permut cycli 86.4 24 0.00052 31.6 19.1 109 130-247 73-196 (323)
466 PF14781 BBS2_N: Ciliary BBSom 85.8 13 0.00028 27.9 12.7 77 77-157 2-90 (136)
467 PF12657 TFIIIC_delta: Transcr 85.5 5.5 0.00012 31.9 7.7 31 119-149 87-122 (173)
468 PF11715 Nup160: Nucleoporin N 85.4 5.7 0.00012 38.8 9.2 40 119-159 216-259 (547)
469 COG4257 Vgb Streptogramin lyas 85.2 23 0.0005 30.3 17.1 200 75-290 63-263 (353)
470 COG4590 ABC-type uncharacteriz 85.0 8.1 0.00017 35.4 8.9 169 114-292 217-389 (733)
471 PLN00033 photosystem II stabil 84.8 33 0.00072 31.8 17.3 110 171-286 282-396 (398)
472 PF12768 Rax2: Cortical protei 84.5 27 0.00058 30.5 11.9 100 96-202 16-126 (281)
473 TIGR03606 non_repeat_PQQ dehyd 84.2 38 0.00081 32.0 18.6 116 117-236 29-166 (454)
474 KOG1916 Nuclear protein, conta 84.1 0.27 5.9E-06 48.2 -0.4 70 75-148 182-265 (1283)
475 COG4257 Vgb Streptogramin lyas 84.1 26 0.00057 30.0 18.8 151 117-291 61-220 (353)
476 PF03022 MRJP: Major royal jel 83.9 29 0.00064 30.5 20.0 202 75-277 2-253 (287)
477 PF02333 Phytase: Phytase; In 83.8 35 0.00075 31.2 19.2 149 130-290 68-238 (381)
478 TIGR02276 beta_rpt_yvtn 40-res 83.2 6.2 0.00013 22.3 5.4 30 130-159 3-33 (42)
479 PF07250 Glyoxal_oxid_N: Glyox 82.7 29 0.00063 29.5 11.7 140 142-293 48-201 (243)
480 PF12657 TFIIIC_delta: Transcr 82.5 17 0.00037 29.0 9.3 30 260-289 86-121 (173)
481 PF10395 Utp8: Utp8 family; I 82.4 54 0.0012 32.4 19.9 169 116-293 128-309 (670)
482 KOG1898 Splicing factor 3b, su 82.1 67 0.0015 33.3 15.5 134 96-244 912-1047(1205)
483 KOG1983 Tomosyn and related SN 81.9 12 0.00026 39.3 10.0 29 172-200 38-66 (993)
484 COG5308 NUP170 Nuclear pore co 81.4 23 0.00051 35.7 11.0 73 171-246 183-276 (1263)
485 PLN02153 epithiospecifier prot 81.1 42 0.00092 30.3 16.9 65 87-153 87-172 (341)
486 KOG2280 Vacuolar assembly/sort 81.0 62 0.0013 32.2 14.4 158 73-246 83-247 (829)
487 KOG2247 WD40 repeat-containing 80.8 0.31 6.7E-06 44.5 -1.3 142 77-236 38-179 (615)
488 TIGR03547 muta_rot_YjhT mutatr 80.2 46 0.00099 30.2 17.5 15 140-154 168-182 (346)
489 PF08801 Nucleoporin_N: Nup133 80.1 53 0.0011 30.8 16.9 31 260-290 190-220 (422)
490 PF14781 BBS2_N: Ciliary BBSom 80.1 23 0.0005 26.7 11.8 108 177-289 6-125 (136)
491 PF02333 Phytase: Phytase; In 80.0 48 0.001 30.3 21.9 195 87-289 69-290 (381)
492 smart00564 PQQ beta-propeller 79.7 5.8 0.00013 21.0 4.1 26 130-155 6-31 (33)
493 PF10214 Rrn6: RNA polymerase 79.5 79 0.0017 32.5 25.9 166 115-291 77-278 (765)
494 PLN00033 photosystem II stabil 79.1 55 0.0012 30.4 18.3 153 76-242 241-396 (398)
495 COG1520 FOG: WD40-like repeat 78.7 54 0.0012 30.1 17.2 192 89-293 71-272 (370)
496 PF12341 DUF3639: Protein of u 78.7 7 0.00015 19.9 3.7 25 216-243 3-27 (27)
497 PLN02193 nitrile-specifier pro 77.9 67 0.0014 30.7 17.3 151 87-247 230-412 (470)
498 PF13449 Phytase-like: Esteras 77.9 53 0.0011 29.5 17.6 157 117-276 19-231 (326)
499 PF01011 PQQ: PQQ enzyme repea 77.0 9.9 0.00021 21.1 4.6 28 132-159 2-29 (38)
500 COG4590 ABC-type uncharacteriz 77.0 19 0.00042 33.1 8.5 171 61-249 208-390 (733)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-47 Score=313.54 Aligned_cols=312 Identities=19% Similarity=0.298 Sum_probs=260.8
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.|-..|-..+.||.++|.|++|+|+| ..|++|+.|.++|+||+.+..+..+. ++|...|.+++|+|+ +..|++|+.|
T Consensus 102 rpvtrCssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD-gk~iASG~~d 178 (480)
T KOG0271|consen 102 RPVTRCSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD-GKKIASGSKD 178 (480)
T ss_pred cccceeccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC-cchhhccccC
Confidence 34467788999999999999999999 68999999999999999999888888 899999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-----CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
|+|++||..+|+.+... +.+|. ..|++++|.| ..++|++++.||.++|||+..+... +....|.
T Consensus 179 g~I~lwdpktg~~~g~~------l~gH~--K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~---~~lsgHT 247 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRA------LRGHK--KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV---RTLSGHT 247 (480)
T ss_pred CeEEEecCCCCCccccc------ccCcc--cceeEEeecccccCCCccceecccCCCCEEEEEccCceEE---EEeccCc
Confidence 99999999998776432 12222 2399999976 5679999999999999999887654 3456667
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEc-----------CCC------------
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS-----------PSG------------ 271 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~------------ 271 (449)
.+|+|+.|- ...+|++|+.|++|++|+...+.....+ .+|...|+.++.+ |.+
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~l--kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCREL--KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhh--cccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 799999997 5679999999999999999865443333 2788889988877 223
Q ss_pred -------------CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccC
Q 013086 272 -------------SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENY 337 (449)
Q Consensus 272 -------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (449)
..|++|+.|.++.+|+....+. + .....+|. ....+.|+|+ ++|++
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--p------i~rmtgHq~lVn~V~fSPd---------~r~IA--- 383 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--P------ITRMTGHQALVNHVSFSPD---------GRYIA--- 383 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEeccccccc--c------hhhhhchhhheeeEEECCC---------ccEEE---
Confidence 3499999999999999753321 1 11111222 2247899999 99999
Q ss_pred CCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 338 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+++-|..|++||..+|+.+.+|++|- ..++.+ +|+.|.++|++|+ |.++++|++++.+....+.+|.+.+.|
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv-~~VYqv-awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHV-AAVYQV-AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhcc-ceeEEE-EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 89999999999999999999999887 889999 9999999999999 999999999999999999999887665
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-46 Score=306.55 Aligned_cols=301 Identities=19% Similarity=0.302 Sum_probs=254.7
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC----
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN---- 129 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~---- 129 (449)
..+.|........++.++|..-|.|++|+||| +.||+|+.||+|++||..++++....+.+|...|++++|.|-.
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~ 216 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP 216 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC
Confidence 33455555666678999999999999999999 6899999999999999999999888889999999999998742
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
.++|++++.||+++|||+..+.++..+..+... |+|+.|--+ .+|++|+.|++|++|+...+..... +.
T Consensus 217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~---------VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~-lk 285 (480)
T KOG0271|consen 217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS---------VTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRE-LK 285 (480)
T ss_pred ccceecccCCCCEEEEEccCceEEEEeccCccc---------eEEEEEcCC-ceEEecCCCceEEEEEccchhHHHh-hc
Confidence 678999999999999999999999998777665 999999643 5899999999999999998776643 35
Q ss_pred eecCCCceEEEEEc-----------C------------------------CCCCEEEEEeCCCeEEEEEccCCCCCCcee
Q 013086 210 IHRKGSKVVGLHCN-----------P------------------------IQPELLLSCGNDHFARIWDIRRLEAGSSLC 254 (449)
Q Consensus 210 ~~~~~~~v~~~~~~-----------~------------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 254 (449)
.|.+ .|+.++.+ | ..+..|++|+.|.++.+|+...... ...+
T Consensus 286 GHah--wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~r 362 (480)
T KOG0271|consen 286 GHAH--WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITR 362 (480)
T ss_pred ccch--heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhh
Confidence 5555 78888776 2 0234699999999999999764332 1222
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEccee
Q 013086 255 DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYI 333 (449)
Q Consensus 255 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 333 (449)
..+|...|+.+.||||++++|+++.|..|++||.++|+.+. .+.+|.. .+.++|+.+ .+++
T Consensus 363 mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la---------sfRGHv~~VYqvawsaD---------sRLl 424 (480)
T KOG0271|consen 363 MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA---------SFRGHVAAVYQVAWSAD---------SRLL 424 (480)
T ss_pred hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh---------hhhhccceeEEEEeccC---------ccEE
Confidence 34899999999999999999999999999999999999854 3444443 368999998 6777
Q ss_pred cccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 334 SENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 334 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
. +|+.|.++++||+++.++...+.+|. ..+.++ .|+|||..+++|+ |..+++|.
T Consensus 425 V---S~SkDsTLKvw~V~tkKl~~DLpGh~-DEVf~v-DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 V---SGSKDSTLKVWDVRTKKLKQDLPGHA-DEVFAV-DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred E---EcCCCceEEEEEeeeeeecccCCCCC-ceEEEE-EecCCCceeecCCCceEEEeec
Confidence 7 89999999999999999999999887 889999 9999999999999 99999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-45 Score=305.60 Aligned_cols=283 Identities=21% Similarity=0.305 Sum_probs=245.3
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeEEEEeCCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~ 149 (449)
|-+.+|..+.|++++ ..|+||+.+|.++||+......+..+ .+|...|.++.|+|. .+..+++|+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 457899999999999 68999999999999999998777777 799999999999998 467899999999999999999
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
...+..+..|.. .|..++|+|+|++|++++.|.+-++||+++..... ...+|...|.+++|+| +|.+
T Consensus 251 e~~l~~l~gH~~---------RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL---~QEGHs~~v~~iaf~~-DGSL 317 (459)
T KOG0272|consen 251 ETPLQDLEGHLA---------RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL---LQEGHSKGVFSIAFQP-DGSL 317 (459)
T ss_pred Ccchhhhhcchh---------hheeeeecCCCceeeecccccchhhcccccchhhH---hhcccccccceeEecC-CCce
Confidence 888888876654 39999999999999999999999999999987653 3345555899999999 9999
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 309 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (449)
+++|+.|..-+|||++++.. .+...+|..+|.+|+|+|+|..||||+.|++++|||++...... .+..|
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---------~ipAH 386 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---------TIPAH 386 (459)
T ss_pred eeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---------ecccc
Confidence 99999999999999998666 33334799999999999999999999999999999998765421 11112
Q ss_pred ccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCe
Q 013086 310 LTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 387 (449)
Q Consensus 310 ~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~ 387 (449)
... ..+.|+|.. |.|++ +++.|++++||...++.++.++.+|. +.|.++ ++++|+.+++|++ |.+
T Consensus 387 ~nlVS~Vk~~p~~--------g~fL~---TasyD~t~kiWs~~~~~~~ksLaGHe-~kV~s~-Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 387 SNLVSQVKYSPQE--------GYFLV---TASYDNTVKIWSTRTWSPLKSLAGHE-GKVISL-DISPDSQAIATSSFDRT 453 (459)
T ss_pred cchhhheEecccC--------CeEEE---EcccCcceeeecCCCcccchhhcCCc-cceEEE-EeccCCceEEEeccCce
Confidence 111 268888843 78887 89999999999999999999999998 777778 8999999999999 999
Q ss_pred EEEEc
Q 013086 388 IFIWR 392 (449)
Q Consensus 388 i~iw~ 392 (449)
+++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=271.01 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=242.0
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.++|+||.+.|+++.|++|. +.+++++.||.+.|||.-+......+ +.....|..++|+|. +++++.|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS-GNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC-CCeEEecCcCceeEEE
Confidence 37999999999999999999 78999999999999999887777666 457889999999999 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++.+.......... ....+|. ..+.++.|.+ ...|++++.|.+..+||+++++... .++.|.+.|.++.++|.
T Consensus 125 ~ls~~d~~g~~~v~-r~l~gHt--gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVS-RELAGHT--GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPS 197 (343)
T ss_pred ecccccccccceee-eeecCcc--ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCCC
Confidence 99865221111110 0011122 2388888877 6789999999999999999988653 56788889999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
+++.+++|+-|+..++||+|.+...+.+ .+|...|+++.|.|+|.-+++|+.|++.++||++..+.+.... +.
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-----~~ 270 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-----HD 270 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-----cC
Confidence 9999999999999999999986443332 4899999999999999999999999999999999876533221 10
Q ss_pred CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-
Q 013086 306 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 384 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s- 384 (449)
........++|+.. |+++. .|..|.++.+||.-.++.+..+.+|. ..|.++ ..+|||..|+||+
T Consensus 271 -~~~~gitSv~FS~S---------GRlLf---agy~d~~c~vWDtlk~e~vg~L~GHe-NRvScl-~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 271 -SIICGITSVAFSKS---------GRLLF---AGYDDFTCNVWDTLKGERVGVLAGHE-NRVSCL-GVSPDGMAVATGSW 335 (343)
T ss_pred -cccCCceeEEEccc---------ccEEE---eeecCCceeEeeccccceEEEeeccC-CeeEEE-EECCCCcEEEecch
Confidence 01111225666655 88888 78999999999999999999999887 889988 8999999999999
Q ss_pred CCeEEEEc
Q 013086 385 SRSIFIWR 392 (449)
Q Consensus 385 dg~i~iw~ 392 (449)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-41 Score=267.68 Aligned_cols=292 Identities=18% Similarity=0.242 Sum_probs=236.6
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC-----eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
..+|.+|++.|+.++..+.+..++++++.|..+.+|++... .....+ .||...|..+..+++ ++++++++.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d-g~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD-GNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC-CceEEeccccc
Confidence 35789999999999999998889999999999999998653 344455 789999999999999 99999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
++++||+.+++..+.+..|... |.+++|++|.+.+++|+.|.+|.+|+......... ....+...|+|+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~d---------Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~--~~~~~~~WVscv 154 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKD---------VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI--HEDSHREWVSCV 154 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCc---------eEEEEecCCCceeecCCCcceeeeeeecccEEEEE--ecCCCcCcEEEE
Confidence 9999999999999999887765 99999999999999999999999999987543311 112225689999
Q ss_pred EEcCCC-CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 221 HCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 221 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
.|+|.. ..+|++++.|++|++||+++.+....+ .+|.+.++.+++||||.++++|+.||.+.+||++.++....
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys--- 229 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS--- 229 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcchhhcc--ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe---
Confidence 999943 679999999999999999976553333 48999999999999999999999999999999998876332
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc-------ceeceeee
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI-------TTISPVNK 372 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~v~~v~~ 372 (449)
+........++|+|+. |.. ....+..|+|||+.++..+..+..... ...+-.++
T Consensus 230 ------l~a~~~v~sl~fspnr----------ywL---~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsla 290 (315)
T KOG0279|consen 230 ------LEAFDIVNSLCFSPNR----------YWL---CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLA 290 (315)
T ss_pred ------ccCCCeEeeEEecCCc----------eeE---eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEE
Confidence 2222333478999963 222 123334599999999998887763221 12222238
Q ss_pred cCCCCcEEeecC-CCeEEEEcCC
Q 013086 373 LHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 373 ~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
|++||..|.+|- |+.|++|.+.
T Consensus 291 ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999 9999999875
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-40 Score=256.71 Aligned_cols=295 Identities=15% Similarity=0.193 Sum_probs=241.7
Q ss_pred CcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce--eeeeecCCCCC
Q 013086 86 NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGW 163 (449)
Q Consensus 86 ~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~ 163 (449)
+-+|++++.|.+||+|...++.+..++. -....|+.+...|+ +..|++++. ..|++||++++.. +..+..+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN- 85 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN- 85 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCCc-
Confidence 3589999999999999999999999984 34678999999999 888888875 5799999998765 5555554332
Q ss_pred CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
|.++.|..+|+.+++|++||+++|||++..... ....+.++|+++..+| +...|++|..+|.|++||
T Consensus 86 --------VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhp-nQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 86 --------VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWD 152 (311)
T ss_pred --------eEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecC-CcceEEeecCCCcEEEEE
Confidence 999999999999999999999999999995433 3334456999999999 888999999999999999
Q ss_pred ccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCC
Q 013086 244 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 323 (449)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (449)
+........+ .......|.++...|+|.+|+.+...|..++|++-++....+...+.......++ ++++.++|+
T Consensus 153 l~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--il~C~lSPd--- 226 (311)
T KOG0315|consen 153 LGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH--ILRCLLSPD--- 226 (311)
T ss_pred ccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce--EEEEEECCC---
Confidence 9875443333 1245678999999999999999999999999999886554433333222222222 358899999
Q ss_pred CceEEEcceecccCCCCCCcceEEEECCCc-eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhh
Q 013086 324 ESLAVIGRYISENYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 401 (449)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~ 401 (449)
++|++ +.++|.+++||++.+. +....+.+|. .-+..+ +||.||+||+||+ |+.+++|++..++.++.
T Consensus 227 ------~k~la---t~ssdktv~iwn~~~~~kle~~l~gh~-rWvWdc-~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 227 ------VKYLA---TCSSDKTVKIWNTDDFFKLELVLTGHQ-RWVWDC-AFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred ------CcEEE---eecCCceEEEEecCCceeeEEEeecCC-ceEEee-eeccCccEEEecCCCCceeecccccCceeee
Confidence 88998 8999999999999988 5555666776 677777 8999999999999 99999999999999999
Q ss_pred hhccceEEEEecC
Q 013086 402 QKEEMKIIVCGKA 414 (449)
Q Consensus 402 ~~~~~~~~~c~~~ 414 (449)
..+|-+..+|...
T Consensus 296 y~gh~K~~vc~~l 308 (311)
T KOG0315|consen 296 YQGHHKAAVCVAL 308 (311)
T ss_pred cCCcccccEEEEe
Confidence 9999988887543
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=258.50 Aligned_cols=295 Identities=20% Similarity=0.305 Sum_probs=242.1
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
+..+.||++.|+.+.|+|+| .+||||+.|..|.+|++..........++|.+.|..+.|.++ +..+++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-CCEEEEecCCceEEEE
Confidence 46788999999999999999 689999999999999987665555555799999999999999 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
|+++|+.+..++.+..- +.++.-+.-|. ++.+++.|+++++||+++..... ......+++++.|..
T Consensus 118 D~~tG~~~rk~k~h~~~---------vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSF---------VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKD 184 (338)
T ss_pred ecccceeeehhccccce---------eeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecc
Confidence 99999999888766543 66666444443 66778899999999999866543 222333799999998
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
.+..+.+|+-|+.|++||++..... ....+|...|+.+..+|+|.++++-+.|.++++||++.....+..-.+...+
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~d~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKNDGL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred -cccceeeccccCceeeeccccCcce--EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 8889999999999999999875442 2234899999999999999999999999999999998655433322233333
Q ss_pred CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 305 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
...-....+.+.|+|+ +.++. .|+.|..+++||......+..+.+|. +.|..+ +|+|...+|.+++
T Consensus 262 ~hnfeknlL~cswsp~---------~~~i~---ags~dr~vyvwd~~~r~~lyklpGh~-gsvn~~-~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPN---------GTKIT---AGSADRFVYVWDTTSRRILYKLPGHY-GSVNEV-DFHPTEPIILSCS 327 (338)
T ss_pred hhhhhhhcceeeccCC---------CCccc---cccccceEEEeecccccEEEEcCCcc-eeEEEe-eecCCCcEEEEec
Confidence 3333344468999999 66666 78999999999999989999999887 788888 9999999999999
Q ss_pred -CCeEEEEc
Q 013086 385 -SRSIFIWR 392 (449)
Q Consensus 385 -dg~i~iw~ 392 (449)
|.+|++=.
T Consensus 328 sdk~i~lge 336 (338)
T KOG0265|consen 328 SDKTIYLGE 336 (338)
T ss_pred cCceeEeec
Confidence 99998743
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-38 Score=268.34 Aligned_cols=315 Identities=19% Similarity=0.300 Sum_probs=254.4
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE----EE---------ecccCCceeEEEEeeCCCCeEEE
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI----VY---------GNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~----~~---------~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
+..|+.+|.+.+|+|..+.+|++|+.|-..++|++....... .+ .......|++++|+.+ +..|++
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~Lat 252 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLAT 252 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEE
Confidence 334999999999999875589999999999999987411110 00 0113467999999999 999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
|+.||.+++|+.. |..+..+..+..+ |.++.|+..|++|++++.|+++.+||..++...... .. +..
T Consensus 253 G~~~G~~riw~~~-G~l~~tl~~HkgP---------I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~--~s~ 319 (524)
T KOG0273|consen 253 GSEDGEARIWNKD-GNLISTLGQHKGP---------IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EF--HSA 319 (524)
T ss_pred eecCcEEEEEecC-chhhhhhhccCCc---------eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-ee--ccC
Confidence 9999999999975 5566666555443 999999999999999999999999999887754322 33 333
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
+...+.|- +...+++++.|+.|+++.+....+.. ...+|.+.|.++.|+|.|.+|++++.|++++||.+......
T Consensus 320 ~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~--t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~- 394 (524)
T KOG0273|consen 320 PALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVK--TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV- 394 (524)
T ss_pred CccceEEe--cCceEeecCCCceEEEEEecCCCcce--eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-
Confidence 45678887 56779999999999999997644433 33479999999999999999999999999999998655542
Q ss_pred CCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecC
Q 013086 296 PSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
+.+..|. .++.+.|+|.++...-.-.+..++ +++.|++|++||+..|.+++.|..|. .+|.++ +|+
T Consensus 395 --------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~---sas~dstV~lwdv~~gv~i~~f~kH~-~pVysv-afS 461 (524)
T KOG0273|consen 395 --------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA---SASFDSTVKLWDVESGVPIHTLMKHQ-EPVYSV-AFS 461 (524)
T ss_pred --------hhhhhhccceeeEeecCCCCccCCCcCCceEE---EeecCCeEEEEEccCCceeEeeccCC-CceEEE-Eec
Confidence 2333332 346889999988777666676666 78999999999999999999999888 899999 999
Q ss_pred CCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE-EEEecCC
Q 013086 375 PRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI-IVCGKAD 415 (449)
Q Consensus 375 ~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~-~~c~~~~ 415 (449)
|+|+++|+|+ ||.|.||+.++++..+...+...+ .+|....
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA 504 (524)
T ss_pred CCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCC
Confidence 9999999999 999999999999999998888874 5565443
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=246.35 Aligned_cols=298 Identities=16% Similarity=0.177 Sum_probs=227.1
Q ss_pred CCcceeeeccceeec--cccccccccCCCCCChHHhhhhhcCCCCCCCcCCCCCCccccceeeeccCccEEEEEEeCCCC
Q 013086 9 MPGHTTMSCPHRVAT--EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 86 (449)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 86 (449)
+.||..+.-..++.+ ....++++++...-.| .+... ..+.....+.|.||+..|..+..+++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W------~L~~d--------d~~~G~~~r~~~GHsH~v~dv~~s~dg- 75 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVW------KLTSD--------DIKYGVPVRRLTGHSHFVSDVVLSSDG- 75 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEE------EeccC--------ccccCceeeeeeccceEecceEEccCC-
Confidence 456666644444444 2334555555444333 22211 334445568999999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
+++++++.|+++++||+.+++....+ .+|...|.+++|+++ +..+++|+.|.+|++|++..... .++....
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck-~t~~~~~------ 146 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCK-YTIHEDS------ 146 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCC-CceeecCCCcceeeeeeecccEE-EEEecCC------
Confidence 68999999999999999999777776 799999999999999 99999999999999999875543 3332221
Q ss_pred CcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 013086 167 RTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244 (449)
Q Consensus 167 ~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 244 (449)
....|.|+.|+|+ ..+|++++.|++|++||+++.+.... ...+.+.++.++++| +|.++++|+.||.+.+||+
T Consensus 147 -~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~---~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 147 -HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT---FIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred -CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---cccccccEEEEEECC-CCCEEecCCCCceEEEEEc
Confidence 0234999999998 67999999999999999998776542 344566899999999 9999999999999999999
Q ss_pred cCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC-CCCccccceeeeeccCCCC
Q 013086 245 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH-DFNRHLTPFRAEWDPKDPS 323 (449)
Q Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (449)
+..+ .+..+++...|.+++|+|+.-.|+.+. +..|+|||+.++..+.....-.... ........+.++|+++
T Consensus 222 ~~~k---~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d--- 294 (315)
T KOG0279|consen 222 NEGK---NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD--- 294 (315)
T ss_pred cCCc---eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC---
Confidence 8644 466778999999999999877666554 5579999999988765444322222 1122233467899998
Q ss_pred CceEEEcceecccCCCCCCcceEEEECC
Q 013086 324 ESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
|+.+. .|..|+.|++|.+.
T Consensus 295 ------G~tLf---~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 295 ------GQTLF---AGYTDNVIRVWQVA 313 (315)
T ss_pred ------CcEEE---eeecCCcEEEEEee
Confidence 76666 78999999999864
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=265.31 Aligned_cols=259 Identities=17% Similarity=0.212 Sum_probs=225.2
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFG 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg 191 (449)
.+-..+|..+.|+.+ +..|+||+.+|.+++|+..+...+..+..|... +.++.|+|. +..+++++.||
T Consensus 172 ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~---------v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR---------VGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred ccCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccc---------eeeEEEccCCCccceeeeccCC
Confidence 346789999999999 999999999999999999999888888776654 999999997 56999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
.+++|++.+...+.. ...|...|..++|+| +|++|++++.|.+-++||+++... .+...+|...|.+++|+|||
T Consensus 242 tvklw~~~~e~~l~~---l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQD---LEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ceeeeccCCCcchhh---hhcchhhheeeeecC-CCceeeecccccchhhcccccchh--hHhhcccccccceeEecCCC
Confidence 999999998766543 334445899999999 999999999999999999997554 34344899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
.++++|+.|..-+|||+++|+++. .+.+|.. ++.+.|+|+ |..++ +|+.|++++|||+
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im---------~L~gH~k~I~~V~fsPN---------Gy~lA---Tgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIM---------FLAGHIKEILSVAFSPN---------GYHLA---TGSSDNTCKVWDL 374 (459)
T ss_pred ceeeccCccchhheeecccCcEEE---------EecccccceeeEeECCC---------ceEEe---ecCCCCcEEEeee
Confidence 999999999999999999998732 1222333 368999999 87777 8999999999999
Q ss_pred CCceEEEEEecCccceeceeeecCC-CCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 351 TTGQLVAEVMDPNITTISPVNKLHP-RDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 351 ~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+.-+.+.++..|. ..|+.| .|+| .|.+|+|++ |++++||...+..+++.+.+|...+.+
T Consensus 375 R~r~~ly~ipAH~-nlVS~V-k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 375 RMRSELYTIPAHS-NLVSQV-KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred cccccceeccccc-chhhhe-EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 9999999998887 788888 8998 789999999 999999999999999999999876554
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=238.28 Aligned_cols=291 Identities=19% Similarity=0.293 Sum_probs=227.3
Q ss_pred cceeeeccCccEEEEEEeCC-CCcEEEEEcCCCcEEEEeCcC---CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~-~~~~l~t~~~d~~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.++.+++|.+.|..++|+|- | .+||+|+.|..|+||+... -.+...+..+|...|++++|+|. +++|++++.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-CcEEEEeeccc
Confidence 45789999999999999998 6 6999999999999999984 44555566789999999999999 99999999999
Q ss_pred eEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 141 TVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 141 ~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++.||.-..+ +++..+..+... |.+++|+++|++||++++|..|.+|.+..............|...|.
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnE---------VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENE---------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccc---------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 9999987655 455566555543 99999999999999999999999999986554443334555666899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
.+.|+| ...+|++++.|.+|++|.-.....-...+.+ +|...|.+++|++.|..|++++.|++++||.+.+.-..
T Consensus 155 ~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~--- 230 (312)
T KOG0645|consen 155 HVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG--- 230 (312)
T ss_pred EEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch---
Confidence 999999 9999999999999999987643333334444 78889999999999999999999999999996532110
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc------eEEEEEecCccceeceee
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG------QLVAEVMDPNITTISPVN 371 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~v~ 371 (449)
. ..-..+.+.|. + | .++ +++.|+.|++|....+ +++....+.|...|.+|
T Consensus 231 -------~--~sr~~Y~v~W~-~---------~-~Ia---S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV- 286 (312)
T KOG0645|consen 231 -------M--HSRALYDVPWD-N---------G-VIA---SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV- 286 (312)
T ss_pred -------h--cccceEeeeec-c---------c-ceE---eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE-
Confidence 0 00111245555 2 1 122 6888999999976542 22333334444688888
Q ss_pred ecCCC-CcEEeecC-CCeEEEEcCC
Q 013086 372 KLHPR-DDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 372 ~~~~~-~~~l~s~s-dg~i~iw~~~ 394 (449)
+|.|. .++|++|+ ||.|++|.+.
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEEec
Confidence 99995 67899988 9999999874
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=252.26 Aligned_cols=298 Identities=19% Similarity=0.320 Sum_probs=242.0
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
..|.|+.| .+..++++||.+-|.|+++.|.+ .+|+||+.|++|+|||+.+++...++ .+|-..|..+++++. ..++
T Consensus 133 ~rPeWHap-wKl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r-HpYl 208 (460)
T KOG0285|consen 133 PRPEWHAP-WKLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR-HPYL 208 (460)
T ss_pred CCccccCc-ceehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc-CceE
Confidence 34455554 45678999999999999999987 79999999999999999999998888 799999999999998 8999
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
++++.|+.|+.||++..+.++.+..+..+ |.+++.+|.-..|++|+.|..+++||+++...+. ....|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~---------V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH 276 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSG---------VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGH 276 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccce---------eEEEeccccceeEEecCCcceEEEeeecccceEE---EecCC
Confidence 99999999999999999999888665543 9999999999999999999999999999976543 44556
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..+|..+.+.| -...+++|+.|++|++||++.++.... ...|...|.+++.+|....+|+++.| .|+-|++..|..
T Consensus 277 ~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~t--lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f 352 (460)
T KOG0285|consen 277 TNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMIT--LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF 352 (460)
T ss_pred CCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEe--eecccceeeEEecCCchhhhhccCCc-cceeccCCccch
Confidence 66999999999 566789999999999999998665333 33689999999999999999999988 799999988876
Q ss_pred CCCCccceecCCCCccccce-eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe---cC----ccc
Q 013086 294 DSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DP----NIT 365 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~----~~~ 365 (449)
... +.++..++ ++.-+.+ |-++ +|+..|.|.+||.++|...+.+. .+ ...
T Consensus 353 ~~n---------lsgh~~iintl~~nsD---------~v~~----~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 353 LQN---------LSGHNAIINTLSVNSD---------GVLV----SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred hhc---------cccccceeeeeeeccC---------ceEE----EcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 442 22222111 2222222 3333 58999999999999987666552 11 123
Q ss_pred eeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 366 TISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 366 ~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
.|.+. +|...|..|++|. |.+|++|.-+
T Consensus 411 gI~as-~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 411 GIFAS-CFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ceeEE-eecccCceEEeccCCcceEEEecc
Confidence 45555 7999999999999 9999999744
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-38 Score=262.20 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=234.8
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
+++......-+..|..+.|.|+| +.|++|+..|.+.+|+...-..... .+.|..+|+++.|+++ +.++++|+.+|.|
T Consensus 86 Kf~h~s~NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~-g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 86 KFVHTSSNKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETI-LQAHDSPVRTMKWSHN-GTWMISGDKGGMI 162 (464)
T ss_pred ceEeccccccccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHH-hhhhcccceeEEEccC-CCEEEEcCCCceE
Confidence 33333334445689999999999 6799999999999999855443333 3789999999999999 9999999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
++|+..-.........+.+ .|.+++|+|++..+++++.||.|+|||....+.... ...|+-.|.+++|
T Consensus 163 KyWqpnmnnVk~~~ahh~e---------aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v---L~GHgwdVksvdW 230 (464)
T KOG0284|consen 163 KYWQPNMNNVKIIQAHHAE---------AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV---LRGHGWDVKSVDW 230 (464)
T ss_pred EecccchhhhHHhhHhhhh---------hhheeccCCCCceeEEecCCCeEEEEeccCCchhhe---eccCCCCcceecc
Confidence 9999875543333222212 399999999999999999999999999988776542 3556668999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcccee
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
+| ...+|++|+.|..|++||.+++.+...+ .+|...|..+.|+|++++|+++|.|..+++||+++.+-+.
T Consensus 231 HP-~kgLiasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~------- 300 (464)
T KOG0284|consen 231 HP-TKGLIASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF------- 300 (464)
T ss_pred CC-ccceeEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH-------
Confidence 99 8889999999999999999987664443 3699999999999999999999999999999998544321
Q ss_pred cCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 303 SHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
.+.++.. ..++.|+|-.+ .++. +|+.||.|..|.+...+++..+...|...|.++ +|+|-|.+|+
T Consensus 301 --~~r~Hkkdv~~~~WhP~~~--------~lft---sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl-~~hPlGhil~ 366 (464)
T KOG0284|consen 301 --TYRGHKKDVTSLTWHPLNE--------SLFT---SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL-AYHPLGHILA 366 (464)
T ss_pred --Hhhcchhhheeeccccccc--------ccee---eccCCCceEEEeccccccccCCCcccccceeee-eccccceeEe
Confidence 1111211 23788999743 2222 689999999999987788888877777999999 9999999999
Q ss_pred ecC-CCeEEEEcC
Q 013086 382 SGS-SRSIFIWRP 393 (449)
Q Consensus 382 s~s-dg~i~iw~~ 393 (449)
+|+ |.++++|.-
T Consensus 367 tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 367 TGSNDRTVRFWTR 379 (464)
T ss_pred ecCCCcceeeecc
Confidence 999 999999964
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=273.80 Aligned_cols=311 Identities=18% Similarity=0.260 Sum_probs=253.6
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
.+.+|...+++.|.--..+|..++|+..|+ +||.|+. =|++-||++....-+... ++|...+++++++|| ++++++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD-gq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD-GQLIAT 367 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC-CcEEEe
Confidence 467888889999998889999999999996 5666654 589999999988877777 799999999999999 999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
|+.||.|+|||..++-+..++..|..+ ++.+.|+..++.+++++.||+|+.||+......... .. ....
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts~---------Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf-t~-P~p~ 436 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTSG---------VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF-TS-PEPI 436 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCCc---------eEEEEEEecCCEEEEeecCCeEEeeeecccceeeee-cC-CCce
Confidence 999999999999999999999877665 999999999999999999999999999887655332 21 2223
Q ss_pred ceEEEEEcCCCCCEEEEEeCCC-eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
...|++..| .+.++.+|+.|. .|.+|++++++....+ .+|+++|.+++|+|.+..|+++|.|.+|++||+-.....
T Consensus 437 QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiL--sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 437 QFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDIL--SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred eeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehh--cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 578999999 899999998887 6999999886554333 289999999999999999999999999999998643211
Q ss_pred CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC------------
Q 013086 295 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------ 362 (449)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------ 362 (449)
...+......+.+.|.|+ |+-++ .++.||+|.+||+..+..+..+.+-
T Consensus 514 --------vEtl~i~sdvl~vsfrPd---------G~ela---VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 514 --------VETLEIRSDVLAVSFRPD---------GKELA---VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred --------eeeEeeccceeEEEEcCC---------CCeEE---EEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 011112222357899998 66665 5778999999999887766544321
Q ss_pred -------ccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 363 -------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 363 -------~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
....++.+ ++++||.+|++|+ ...|.||++.++-.++++...
T Consensus 574 ~ta~~sa~~K~Ftti-~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTI-CYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred eehhhcccCCceEEE-EEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 12456677 8999999999999 899999999999888877543
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.2e-38 Score=267.46 Aligned_cols=296 Identities=21% Similarity=0.335 Sum_probs=243.8
Q ss_pred ccccceeeeccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
+...+..+.||+..|+++.|.| .+ .+|++++.|+.|+||++.. +.++.++ .+|..+|.+++|+++ +..|++++.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~-g~~fLS~sfD 279 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC-GTSFLSASFD 279 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc-CCeeeeeecc
Confidence 3567789999999999999999 55 8999999999999999988 5556666 799999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
+.|++||+++|+++..+..... +.++.|+|++ +.+++|+.|+.|+.||+++++.+.+ ...+-+.|.
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~----------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---Yd~hLg~i~ 346 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKV----------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---YDRHLGAIL 346 (503)
T ss_pred eeeeeeccccceEEEEEecCCC----------ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH---HHhhhhhee
Confidence 9999999999999998876543 8999999998 8999999999999999999986643 234455899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
.+.|-+ ++..+++.+.|++++||+.+..-..+.+.. .+.....++..+|++++++.-+.|+.|.+|.+...-... ..
T Consensus 347 ~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n-kk 423 (503)
T KOG0282|consen 347 DITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN-KK 423 (503)
T ss_pred eeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEEEecccccccC-Hh
Confidence 999999 999999999999999999987555443322 234456789999999999999999999999975322211 11
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC-
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD- 377 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~- 377 (449)
.....+...+ ..+.+.|+|+ |.++. +|..+|.+.+||.++-+++..+..|. ..+..+ .|+|..
T Consensus 424 K~feGh~vaG--ys~~v~fSpD---------G~~l~---SGdsdG~v~~wdwkt~kl~~~lkah~-~~ci~v-~wHP~e~ 487 (503)
T KOG0282|consen 424 KRFEGHSVAG--YSCQVDFSPD---------GRTLC---SGDSDGKVNFWDWKTTKLVSKLKAHD-QPCIGV-DWHPVEP 487 (503)
T ss_pred hhhcceeccC--ceeeEEEcCC---------CCeEE---eecCCccEEEeechhhhhhhccccCC-cceEEE-EecCCCc
Confidence 1111121111 2357899999 88888 89999999999999999999999885 566666 799965
Q ss_pred cEEeecC-CCeEEEEc
Q 013086 378 DVLASGS-SRSIFIWR 392 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~ 392 (449)
..+||++ ||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 5788888 99999996
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.1e-36 Score=232.59 Aligned_cols=278 Identities=18% Similarity=0.253 Sum_probs=224.0
Q ss_pred CCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-eEEEecccCCceeEEEEeeCCCCeEE
Q 013086 56 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPTNDGTVY 134 (449)
Q Consensus 56 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~ 134 (449)
+.|......|+.+++...+.|+.+...|++ +.||+++. -.||+||+.+... +.....+|...|+++.|..+ ++.++
T Consensus 23 RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d-grWMy 99 (311)
T KOG0315|consen 23 RFWQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD-GRWMY 99 (311)
T ss_pred eeeehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec-CeEEE
Confidence 345556678899999999999999999999 67888774 6799999988654 33333799999999999999 99999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 135 AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 135 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
+|+.||+++|||++...+.+.+... ..|+++..+|+...|+++..+|.|++||+.......++ ..+..
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~ 167 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDD 167 (311)
T ss_pred ecCCCceEEEEeccCcccchhccCC----------CCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCC
Confidence 9999999999999997776666543 23999999999999999999999999999987655433 34444
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee----ecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC----DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
..|.++.+.| ++.+++.+...|..++|++-+......+. ...|.+.+..+.+||++++|+++|.|.+++||+.++
T Consensus 168 ~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 5899999999 99999999999999999997644332222 226899999999999999999999999999999976
Q ss_pred CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 291 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
. +.. ...+.. .+++ ...++|+.+ |+|++ +|+.|+.+++||+..++.+..+.+|+...++
T Consensus 247 ~-~kl--e~~l~g--h~rW--vWdc~FS~d---------g~Ylv---Tassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 247 F-FKL--ELVLTG--HQRW--VWDCAFSAD---------GEYLV---TASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred c-eee--EEEeec--CCce--EEeeeeccC---------ccEEE---ecCCCCceeecccccCceeeecCCcccccEE
Confidence 5 110 111111 1112 135677777 99999 8999999999999999999999999854443
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-36 Score=231.04 Aligned_cols=291 Identities=16% Similarity=0.199 Sum_probs=237.8
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
..+.|..|+++|.++.|+-+| ++.++++.|.+|++|+...+..+.++ .+|...|..++.+.+ +..|++|+.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D-nskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD-NSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc-ccccccCCCCceEEE
Confidence 457889999999999999999 68999999999999999999999998 799999999999999 889999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
||+.+|+..+.+..+... |+.++|+.+...+++|+.|..+++||-++..... +.........|.++.+..
T Consensus 86 wDV~TGkv~Rr~rgH~aq---------VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQ---------VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVAE 155 (307)
T ss_pred EEcccCeeeeecccccce---------eeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEecc
Confidence 999999999999876654 9999999999999999999999999999866442 222333344688988854
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
..|++|+.||+++.||++.+....- ....+|+++.|+++++..++++.|+++++.|-.+|++++......
T Consensus 156 ---heIvaGS~DGtvRtydiR~G~l~sD----y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk--- 225 (307)
T KOG0316|consen 156 ---HEIVAGSVDGTVRTYDIRKGTLSSD----YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK--- 225 (307)
T ss_pred ---cEEEeeccCCcEEEEEeecceeehh----hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc---
Confidence 7899999999999999997544221 245679999999999999999999999999999999865332110
Q ss_pred CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 305 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
.....+.++++.. ...++ +|++||.|++||+.++..+..+..+..-.+..+ +++|.-..|+++.
T Consensus 226 ---n~eykldc~l~qs---------dthV~---sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl-~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 226 ---NMEYKLDCCLNQS---------DTHVF---SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL-SCHPTMDDFITAT 289 (307)
T ss_pred ---cceeeeeeeeccc---------ceeEE---eccCCceEEEEEeccceeeeeeccCCceeEEee-ecccCccceeEec
Confidence 0000112333322 22222 799999999999999999999988875557788 8999998888888
Q ss_pred CCeEEEEcCC
Q 013086 385 SRSIFIWRPK 394 (449)
Q Consensus 385 dg~i~iw~~~ 394 (449)
++.+.+|.-.
T Consensus 290 ~~~~~~~~~~ 299 (307)
T KOG0316|consen 290 GHGDLFWYQE 299 (307)
T ss_pred CCceeceeeh
Confidence 7788888543
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=271.11 Aligned_cols=321 Identities=17% Similarity=0.239 Sum_probs=238.0
Q ss_pred CcCCCCCCccccceeeec-cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC-CC
Q 013086 54 MKPAHVIPDQVNCAVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DG 131 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 131 (449)
+...+..|....++.++. |+++|.-++|+|.+ .++++|+.|+.++|||+..+.+...+ .+|.+.|.++.|+|+. ..
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchh
Confidence 345688888999999998 99999999999999 79999999999999999999999988 8999999999999973 34
Q ss_pred eEEEEeCCCeEEEEeCCCCce-eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc----------------------
Q 013086 132 TVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---------------------- 188 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------------------- 188 (449)
.|++|..|+++++||+++... ...+..+... +++++|++++..+++++
T Consensus 163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~---------vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y 233 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSA---------VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY 233 (775)
T ss_pred heeecCCCceEEEEEcccCchHHHHHHhhhhh---------eeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh
Confidence 588999999999999985543 3222222111 33333333333333333
Q ss_pred --------------------------------------------------------------------------------
Q 013086 189 -------------------------------------------------------------------------------- 188 (449)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (449)
T Consensus 234 e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 234 ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc
Confidence
Q ss_pred -----------------------------------------------------------------------CCCeEEEEE
Q 013086 189 -----------------------------------------------------------------------NFGFLYLVD 197 (449)
Q Consensus 189 -----------------------------------------------------------------------~dg~i~i~d 197 (449)
.|.++++|.
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 333333332
Q ss_pred CCCCCCcc-ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC--c-e----eecCCCCcEEEEEEcC
Q 013086 198 ARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS--S-L----CDLPHKRVVNSAYFSP 269 (449)
Q Consensus 198 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-~----~~~~~~~~v~~~~~~~ 269 (449)
+..+.... .......|...|.+++++.....+|+++|.|++|++|++...+... . + ....|...|++++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 21111000 0001123334566666665456789999999999999997622211 1 1 1125899999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
+.++++|||.|.+.+||++....+ .+.+.+|.. .+++.|+|. .+.++ +++.|.+|+||
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l---------~~vLsGH~RGvw~V~Fs~~---------dq~la---T~SgD~TvKIW 532 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRL---------LGVLSGHTRGVWCVSFSKN---------DQLLA---TCSGDKTVKIW 532 (775)
T ss_pred CCceEEecccccceeeecccCceE---------EEEeeCCccceEEEEeccc---------cceeE---eccCCceEEEE
Confidence 999999999999999999984443 233333332 357889987 56666 78999999999
Q ss_pred ECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE
Q 013086 349 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 349 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
.+.+..++.++.+|. ..|..+ .|-.+|..|++++ ||.|++|++++++++..+..|.+.
T Consensus 533 ~is~fSClkT~eGH~-~aVlra-~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHT-SAVLRA-SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred EeccceeeeeecCcc-ceeEee-eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 999999999999998 566666 7999999999988 999999999999999999999875
No 19
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=251.18 Aligned_cols=294 Identities=20% Similarity=0.228 Sum_probs=233.7
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee---eEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
..++|+.|++.|+-+.||++| ++||+++.|.+..+|.+..... ..++ .+|..+|..+.|+|+ .++|++|+.|..
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD-dryLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD-DRYLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC-CCeEEecCchHh
Confidence 357899999999999999999 7999999999999998865433 3344 789999999999999 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+.+||+.+|.....+.... ...+.+++|.||+..+++|+.|+.+..||+...... ....... ..|.+++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~--------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~--~W~gvr~-~~v~dla 361 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGL--------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG--NWEGVRD-PKVHDLA 361 (519)
T ss_pred eeeccCCcchhhhhcccCc--------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhh--ccccccc-ceeEEEE
Confidence 9999999999887765431 123899999999999999999999999999865422 1111111 2699999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
..+ ++.++++.+.|..|++|+..+...... .....+|+++..|.+++++++.-.+..+++||+...++....
T Consensus 362 it~-Dgk~vl~v~~d~~i~l~~~e~~~dr~l---ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY---- 433 (519)
T KOG0293|consen 362 ITY-DGKYVLLVTVDKKIRLYNREARVDRGL---ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY---- 433 (519)
T ss_pred EcC-CCcEEEEEecccceeeechhhhhhhcc---ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh----
Confidence 999 999999999999999999876444322 245678999999999999999999999999999865543211
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC-cEE
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-DVL 380 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l 380 (449)
..+. ...-.+..+|.-.. ..+++ +|++|+.|+||+..+|+++..+.+|. ..+.+| +|+|.. .++
T Consensus 434 ~Ghk--q~~fiIrSCFgg~~--------~~fia---SGSED~kvyIWhr~sgkll~~LsGHs-~~vNcV-swNP~~p~m~ 498 (519)
T KOG0293|consen 434 FGHK--QGHFIIRSCFGGGN--------DKFIA---SGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCV-SWNPADPEMF 498 (519)
T ss_pred hccc--ccceEEEeccCCCC--------cceEE---ecCCCceEEEEEccCCceeEeecCCc-ceeeEE-ecCCCCHHHh
Confidence 1111 11112334444331 34555 89999999999999999999999998 888888 999965 578
Q ss_pred eecC-CCeEEEEcCCC
Q 013086 381 ASGS-SRSIFIWRPKE 395 (449)
Q Consensus 381 ~s~s-dg~i~iw~~~~ 395 (449)
|+|+ ||+||||.+..
T Consensus 499 ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSD 514 (519)
T ss_pred hccCCCCeEEEecCCc
Confidence 8888 89999998764
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-36 Score=247.99 Aligned_cols=297 Identities=18% Similarity=0.253 Sum_probs=250.1
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
....|.+.....+.+|..+|+.+-|+|+- .++++++.|++|++||..+++....+ ++|...|.+|.|+.. +.+++++
T Consensus 92 ~~wipRp~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~-Gk~l~tc 168 (406)
T KOG0295|consen 92 ALWIPRPNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS-GKYLATC 168 (406)
T ss_pred hhcCCCCCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC-ccEEEec
Confidence 34566666778899999999999999998 68999999999999999999986666 899999999999999 9999999
Q ss_pred eCCCeEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 137 SSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 137 ~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
+.|-.+.+||..+ -++++....+.. .|.++.|-|.|.++++++.|.+|+.|++.++..+. .+..+..
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h---------~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~---t~~~h~e 236 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEH---------GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK---TFPGHSE 236 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCccc---------ceeeEEEEecCCeeeecccccceeEEecccceeEE---eccCchH
Confidence 9999999999986 344444433332 39999999999999999999999999999987664 4445555
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC---------------CCEEEEeeCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS---------------GSKILTTSQD 280 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d 280 (449)
.|..++.+. ++.++++++.|.+|++|-+.+.+....+. .|+.+|.+++|-|. +.++.+++.|
T Consensus 237 wvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 237 WVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred hEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 899999999 99999999999999999998866655554 58888999999773 2589999999
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
++|++||+.+|.++- .......++. .++|+|. |+|++ +..+|+++++||++++++..++.
T Consensus 314 ktIk~wdv~tg~cL~------tL~ghdnwVr--~~af~p~---------Gkyi~---ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLF------TLVGHDNWVR--GVAFSPG---------GKYIL---SCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ceEEEEeccCCeEEE------EEecccceee--eeEEcCC---------CeEEE---EEecCCcEEEEEeccceeeeccC
Confidence 999999999997632 2223333332 5788888 99999 89999999999999999999998
Q ss_pred cCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 361 DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 361 ~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
.|. ..++++ .|+.+..+++||+ |..+++|.-
T Consensus 374 ah~-hfvt~l-Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHE-HFVTSL-DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCc-ceeEEE-ecCCCCceEEeccccceeeeeec
Confidence 665 677777 9999999999999 999999963
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6e-35 Score=250.74 Aligned_cols=313 Identities=13% Similarity=0.209 Sum_probs=245.0
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe--cccCCceeEEEEeeCCCCeEEE
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s 135 (449)
..=|+.+...+++.|..-|.|+.|+||| .++||.+.||.|.+||=.+++.+..+. .+|.+.|.++.|+|+ +..|++
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T 252 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLT 252 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEE
Confidence 4445555667889999999999999999 689999999999999999998888774 479999999999999 999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCC----------------------------------CCCCCcccceeEEEEecCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNG----------------------------------WHGPRTWRMLYGMDINPEK 181 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~i~~~~~~~~~ 181 (449)
++.|.+++|||+.++++..++...... ..-..+...|++++.++++
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 999999999999998877666443220 0011344569999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCCCccc-------------------eE----------------------------------
Q 013086 182 GVVLVADNFGFLYLVDARTNSRSGE-------------------AI---------------------------------- 208 (449)
Q Consensus 182 ~~l~~~~~dg~i~i~d~~~~~~~~~-------------------~~---------------------------------- 208 (449)
.+|++|+.||.|.-|+..++..... ++
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 9999999999999999866422100 00
Q ss_pred -----------------Eee--------cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEE
Q 013086 209 -----------------LIH--------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVN 263 (449)
Q Consensus 209 -----------------~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 263 (449)
... ...-...+++++| ++..+++|+.|+.|+||.+.............|.++|+
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence 000 0011246778889 99999999999999999998766555555568999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc
Q 013086 264 SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
++++|||+.+|+++...+.+.+||+.+++. ....-.. ....+.+++|+|+ ...++ +|+-|-
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~F------HtakI~~~aWsP~---------n~~vA---TGSlDt 552 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWAF------HTAKINCVAWSPN---------NKLVA---TGSLDT 552 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCce-ecceeee------eeeeEEEEEeCCC---------ceEEE---eccccc
Confidence 999999999999999999999999988775 2111111 2233458999999 56666 899999
Q ss_pred ceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 344 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
.|.||++........+.+.|...+..+ .|-.+.. |++.+ |..|++|++.
T Consensus 553 ~Viiysv~kP~~~i~iknAH~~gVn~v-~wlde~t-vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 553 NVIIYSVKKPAKHIIIKNAHLGGVNSV-AWLDEST-VVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEEEccChhhheEeccccccCceeE-EEecCce-EEeccCcceeEEeccc
Confidence 999999987766666777666778888 7765554 55555 9999999874
No 22
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=250.26 Aligned_cols=321 Identities=39% Similarity=0.673 Sum_probs=265.0
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCC-cEEEEEcCCCcEEEEeCcCC---eeeEEEecccCCceeEEEEeeCC
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTN 129 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~~l~t~~~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~ 129 (449)
++.....+......+.+.|.+.|++++|+|..+ +++|+|+..|+|-+||+.+. .....+...|..+|.+|.|+|.+
T Consensus 167 ~~~dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 167 IKFDLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred cccccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC
Confidence 444456667777888999999999999999876 78999999999999999532 22233346799999999999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
...+++.+.||+|++-|++.+.....+... .....+..+.|+.+...+++++.=|...+||+++.........
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLD-------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcC-------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 899999999999999999987655444432 1223488899999999999999888999999999887655556
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc--eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS--LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
.|.. .|.+++++|....+|++++.|++++|||++....... +..+.|...|.+..|||.+..|++.+.|..|+|||
T Consensus 320 lh~k--KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 320 LHKK--KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhc--ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 6655 8999999999999999999999999999998776654 66678999999999999877799999999999999
Q ss_pred CC-CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccce
Q 013086 288 SI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 366 (449)
Q Consensus 288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 366 (449)
.. -+....+...+.+.+...++.+++...|.|+ ..+...|+| -..|-|+|-..++.+..+.++....
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~---~~li~vg~~---------~r~IDv~~~~~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPD---YNLIVVGRY---------PRPIDVFDGNGGQMVCELHDPESST 465 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCC---ccEEEEecc---------CcceeEEcCCCCEEeeeccCccccc
Confidence 84 3344557777888889999999999999996 344444444 4459999999999999999888788
Q ss_pred eceeeecCCCCcEEeecC--CCeEEEEcCCC
Q 013086 367 ISPVNKLHPRDDVLASGS--SRSIFIWRPKE 395 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~s--dg~i~iw~~~~ 395 (449)
|.+++.|+|-+..+++|+ .|.|+||--+.
T Consensus 466 I~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 466 IPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccceeecccccceeccCCccceEEEEecCC
Confidence 999999999999777766 69999986543
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=243.70 Aligned_cols=317 Identities=13% Similarity=0.115 Sum_probs=250.3
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
.+..|..|++.|.+++.+|+. ++++||+.|....||++.++.....+ .+|...|+++.|+.+ +.+|+||..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd-gtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD-GTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC-ceEEEecCCCccEEE
Confidence 457899999999999999976 79999999999999999999977777 799999999999999 999999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
|...++.....+..... .+.-+.|+|.+..|++|+.||.+.+|.+.+.... .....+..++++-.|.|
T Consensus 133 ~~~stg~~~~~~~~e~~---------dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVE---------DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEcccCceEEEeecccC---------ceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccC
Confidence 99999988877752222 2888999999999999999999999999886332 24455677999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
+++.++++..||+|++||..+++....+... ......++.++..+..++.|+.++.+++-+..+|+.+..........
T Consensus 201 -dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 201 -DGKRILTGYDDGTIIVWNPKTGQPLHKITQA-EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred -CCceEEEEecCceEEEEecCCCceeEEeccc-ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999999999999999999987654443322 24467789999999999999999999999998888754333111000
Q ss_pred CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 305 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
........-++.+.|......++ .+|+.||+|.|||+...++.+.+... ..|..+ .|-+ ..+|++++
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~---------A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~l-~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLA---------ACGSVDGTIAIYDLAASTLRHICEHE--DGVTKL-KWLN-TDYLLTAC 345 (399)
T ss_pred cccchhhhhhhhhcccccccchh---------hcccccceEEEEecccchhheeccCC--CceEEE-EEcC-cchheeec
Confidence 00111111133444432222222 27899999999999888877666433 457777 7888 66788877
Q ss_pred -CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 385 -SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 385 -dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+|.|+.||.++|+++..+.+|...+.|
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeE
Confidence 999999999999999999999887665
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-34 Score=252.68 Aligned_cols=287 Identities=23% Similarity=0.385 Sum_probs=233.2
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
++.+++|.++|++++|+|++ .+|++++.||.|++|++.+....... ..|...+..+.|+|+ ++.+++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD-GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC-CCEEEEEcCCCeEEEE
Confidence 35788999999999999998 68999999999999999887765555 678999999999998 7899999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++.+++....+..+.. .+.++.|++++.++++++.++.+.+||+.+.+... ....+...+.+++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~- 145 (289)
T cd00200 79 DLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---TLRGHTDWVNSVAFSP- 145 (289)
T ss_pred EcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---EeccCCCcEEEEEEcC-
Confidence 9998776666654332 39999999998888888889999999998655432 2334555799999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
++.++++++.++.|++||+++.+....+. .|...|.++.|+|+++.+++++.|+.|++||+++++......
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------- 216 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR------- 216 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-------
Confidence 78888888889999999998655544333 577799999999999999999999999999998765533211
Q ss_pred CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-
Q 013086 306 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 384 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s- 384 (449)
........+.|+|+ +.+++ +++.++.|++||+.+++....+..+. ..+..+ +|+|++.+|++++
T Consensus 217 -~~~~~i~~~~~~~~---------~~~~~---~~~~~~~i~i~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~l~~~~~ 281 (289)
T cd00200 217 -GHENGVNSVAFSPD---------GYLLA---SGSEDGTIRVWDLRTGECVQTLSGHT-NSVTSL-AWSPDGKRLASGSA 281 (289)
T ss_pred -hcCCceEEEEEcCC---------CcEEE---EEcCCCcEEEEEcCCceeEEEccccC-CcEEEE-EECCCCCEEEEecC
Confidence 01113346788887 44444 45568999999999999988888655 678888 8999999999999
Q ss_pred CCeEEEEc
Q 013086 385 SRSIFIWR 392 (449)
Q Consensus 385 dg~i~iw~ 392 (449)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=256.64 Aligned_cols=267 Identities=19% Similarity=0.292 Sum_probs=219.5
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
-+...+||...|++++++||| +++|||+.||.|+|||...+-+..++ ..|+..|+.+.|+.. ++.+++++.||+|+.
T Consensus 342 YVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~-g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTAR-GNVLLSSSLDGTVRA 418 (893)
T ss_pred eeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEec-CCEEEEeecCCeEEe
Confidence 345668999999999999999 68999999999999999999999999 679999999999999 999999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-eEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
||+...+.-+++..+... ...+++..|.|.++++|+.|. .|++|++.+++.+. ...+|.++|.+++|+
T Consensus 419 wDlkRYrNfRTft~P~p~--------QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPI--------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFS 487 (893)
T ss_pred eeecccceeeeecCCCce--------eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEc
Confidence 999999998888776543 378999999999999999887 79999999998764 345666799999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc----
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE---- 299 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 299 (449)
| .+..|++++.|.+|++||+-.. ......+.+...+..++|+|+|+.|+++..||.|.+||...+........
T Consensus 488 ~-~~~~LaS~SWDkTVRiW~if~s--~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 488 P-DGSLLASGSWDKTVRIWDIFSS--SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL 564 (893)
T ss_pred c-ccCeEEeccccceEEEEEeecc--CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence 9 9999999999999999998642 22444556788899999999999999999999999999987655421111
Q ss_pred --------ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 300 --------IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 300 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
..............+++++++ |.++. +|+..+.|.+||+.++-+++.++
T Consensus 565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaD---------G~~Il---AgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKGKTFTTICYSAD---------GKCIL---AGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred cccccccceeehhhcccCCceEEEEEcCC---------CCEEE---ecCCcccEEEEECchhheeeeEE
Confidence 001111111122235778887 88777 78999999999998887666554
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-34 Score=245.21 Aligned_cols=277 Identities=19% Similarity=0.335 Sum_probs=231.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
..|++++|+.+| .+||+|+.||.++||+..... ...+ ..|.++|.++.|+.. +++|++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l-~~tl-~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL-ISTL-GQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCC-CeEEEeecCcEEEEEecCchh-hhhh-hccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEE
Confidence 579999999999 699999999999999986544 3334 569999999999999 999999999999999999999999
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
..+.++..+ -..+.|-.+ ..+++.+.|+.|+++.+....+...+ ..|.++|.++.|+| .+.+|+++
T Consensus 312 q~f~~~s~~---------~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~-tg~LLaS~ 377 (524)
T KOG0273|consen 312 QQFEFHSAP---------ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNP-TGSLLASC 377 (524)
T ss_pred EeeeeccCC---------ccceEEecC-ceEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECC-CCceEEEe
Confidence 888877653 345666543 46889999999999999887776533 33666999999999 99999999
Q ss_pred eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCCCCCCCCccceecC
Q 013086 234 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG---------SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
+.|++++||++........+ ..|...|..+.|+|.| ..|++++.|++|++||+..+.++ +
T Consensus 378 SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i---------~ 446 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI---------H 446 (524)
T ss_pred cCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee---------E
Confidence 99999999998765554444 2699999999999954 47899999999999999988763 3
Q ss_pred CCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 305 DFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
.+.+|.. .+.++|+|+ |+|++ +|+.|+.|.+|+++++++++.+.+.. .|..+ +|+.+|.+|..+
T Consensus 447 ~f~kH~~pVysvafS~~---------g~ylA---sGs~dg~V~iws~~~~~l~~s~~~~~--~Ifel-~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPN---------GRYLA---SGSLDGCVHIWSTKTGKLVKSYQGTG--GIFEL-CWNAAGDKLGAC 511 (524)
T ss_pred eeccCCCceEEEEecCC---------CcEEE---ecCCCCeeEeccccchheeEeecCCC--eEEEE-EEcCCCCEEEEE
Confidence 3433433 368999999 99999 99999999999999999999998764 57777 899999988886
Q ss_pred C-CCeEEEEcCC
Q 013086 384 S-SRSIFIWRPK 394 (449)
Q Consensus 384 s-dg~i~iw~~~ 394 (449)
- ||.+++-|+.
T Consensus 512 ~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 ASDGSVCVLDLR 523 (524)
T ss_pred ecCCCceEEEec
Confidence 6 9999998864
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=267.49 Aligned_cols=293 Identities=22% Similarity=0.382 Sum_probs=235.7
Q ss_pred ceeeecc-CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 66 CAVIRYH-SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 66 ~~~~~~h-~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...+.+| ...|.++.|+++| +++++++.|+.+++|+..... ....+ .+|...|.+++|+|+ +.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d-~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD-GSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC-CcEEEEecCCceE
Confidence 4555555 8899999999999 579999999999999997666 44444 689999999999999 9999999999999
Q ss_pred EEEeC-CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 143 SCTDL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 143 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
++||+ ..+..++.+..|... |++++|+|+++++++|+.|++|++||+++++... ....|...|++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~---------v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTY---------VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGISGLA 295 (456)
T ss_pred EEeeccCCCeEEEEecCCCCc---------eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCceEEEE
Confidence 99999 555788888766554 9999999999999999999999999999966553 3445555899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCC--CceeecCCCC--cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAG--SSLCDLPHKR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
|++ ++++|++++.|+.|++||+.++... ..+. ++.. .++++.|+|++.+|++++.|+.+++||+..+......
T Consensus 296 f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 296 FSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLS--GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred ECC-CCCEEEEcCCCccEEEEECCCCceeeeeccc--CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 999 9999999999999999999986632 2222 2222 6999999999999999999999999999988764322
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
.. +... ..+.+++.. ...|.++. +|+.|+.|++||+.++..+..+.+|....+..+ +++|..
T Consensus 373 ~~----~~~~-----~~~~~~~~~-----~~~~~~i~---sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~-~~~~~~ 434 (456)
T KOG0266|consen 373 TG----HSNL-----VRCIFSPTL-----STGGKLIY---SGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL-SSHPTE 434 (456)
T ss_pred cc----cCCc-----ceeEecccc-----cCCCCeEE---EEeCCceEEEEeCCccchhhhhcCCCCCceecc-ccCCCc
Confidence 21 1111 012222211 12266666 899999999999999999999998854666666 899999
Q ss_pred cEEeecC---CCeEEEEcCC
Q 013086 378 DVLASGS---SRSIFIWRPK 394 (449)
Q Consensus 378 ~~l~s~s---dg~i~iw~~~ 394 (449)
+++++++ |+.+++|..+
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999976 7999999764
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-35 Score=265.35 Aligned_cols=254 Identities=22% Similarity=0.286 Sum_probs=211.6
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe------------------------------eeEEE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------------------------------EKIVY 112 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~------------------------------~~~~~ 112 (449)
..|..++.--...++|..|++++ .+||.|..|..|++|.+...+ .....
T Consensus 368 Sic~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 44555565556789999999999 699999999999999986311 01112
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 192 (449)
..+|.++|..+.|+|+ .++|++++.|+++|+|.+.+..+...+..+..+ |+.+.|+|.|-++|+++.|++
T Consensus 447 L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P---------VwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP---------VWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcc---------eeeEEecCCceEEEecCCCce
Confidence 3689999999999999 999999999999999999999998888766554 999999999999999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
.++|......+.. ++. .|-+.|.|+.|+| +.+++++||.|.++++||+.++...+.+ .+|.++|.+++|||+|+
T Consensus 517 ArLWs~d~~~PlR-ifa--ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 517 ARLWSTDHNKPLR-IFA--GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeecccCCchh-hhc--ccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCCCc
Confidence 9999998866553 223 4445899999999 9999999999999999999886553333 38999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+|++|+.||.|.+||+.++
T Consensus 591 ~LaSg~ed~~I~iWDl~~~------------------------------------------------------------- 609 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANG------------------------------------------------------------- 609 (707)
T ss_pred eEeecccCCcEEEEEcCCC-------------------------------------------------------------
Confidence 9999999999988888543
Q ss_pred ceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 353 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 353 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+++..+.+| .+.+.++ .|+.+|..||+|+ |.+|++||+....
T Consensus 610 -~~v~~l~~H-t~ti~Sl-sFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 610 -SLVKQLKGH-TGTIYSL-SFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -cchhhhhcc-cCceeEE-EEecCCCEEEecCCCCeEEEEEchhhc
Confidence 334455666 3778888 8999999999999 9999999986544
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=240.69 Aligned_cols=308 Identities=19% Similarity=0.308 Sum_probs=242.8
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
..+-.+.||...|+++.|-|..+..++||+.|++|.+|+=...+..... ..|..-|+++.|+|+ +.+|++++.||.+.
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPD-G~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPD-GSRFATAGSDGKIY 215 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCC-CCeEEEecCCccEE
Confidence 3455688999999999999999888999999999999987665555555 579999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce----------------
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA---------------- 207 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------- 207 (449)
+||-.+|+.+..+... ..+...|.+++|+||+..+++++.|.++++||+.+.+.....
T Consensus 216 iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred EEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 9999999999888631 222335999999999999999999999999998776432111
Q ss_pred ------------------------EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc-----------
Q 013086 208 ------------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS----------- 252 (449)
Q Consensus 208 ------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------- 252 (449)
.....|...|+++..+| ++.+|++|+.||.|.-|+..++...+.
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 12234556899999999 889999999999999999764322000
Q ss_pred -----------------------------------------------------------eeec---------CCCCcEEE
Q 013086 253 -----------------------------------------------------------LCDL---------PHKRVVNS 264 (449)
Q Consensus 253 -----------------------------------------------------------~~~~---------~~~~~v~~ 264 (449)
+..+ ...-...+
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 0000 01123557
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcc
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
++++|++..+++|+.|+.|+||.+..+.+....... .....+..++|+|+ +.|++ ++...+.
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~------~h~a~iT~vaySpd---------~~yla---~~Da~rk 510 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL------EHRAAITDVAYSPD---------GAYLA---AGDASRK 510 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeee------cccCCceEEEECCC---------CcEEE---EeccCCc
Confidence 899999999999999999999999876653221111 11222347899999 88988 7888899
Q ss_pred eEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 345 IDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
+.+||+.+.+.......-|...|.++ +|+|+..++|||+ |-+|.||+++.....
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~-aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCV-AWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEE-EeCCCceEEEeccccceEEEEEccChhhh
Confidence 99999999887555445444889999 9999999999999 999999999876543
No 30
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=233.53 Aligned_cols=312 Identities=17% Similarity=0.215 Sum_probs=237.8
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC-----------------CeeeEEEecccCCc
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-----------------VSEKIVYGNIHSCI 119 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~-----------------~~~~~~~~~~h~~~ 119 (449)
....|...+...+..|+.++.+.+|++|| .++|||+.|..|+|.|++. ...+...+-.|...
T Consensus 96 ~s~e~~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 96 SSPEPSEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE 174 (430)
T ss_pred CCCCCcccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence 34445555667889999999999999999 6999999999999999862 11222233569999
Q ss_pred eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC
Q 013086 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 199 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 199 (449)
|+++.|+|. ...|++++.|++|++||+......+.++.-.. ...+.++.|+|.|.++++|+....+++||+.
T Consensus 175 vn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 175 VNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhc-------cceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 999999999 99999999999999999976544433332111 1249999999999999999999999999999
Q ss_pred CCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC
Q 013086 200 TNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
+.+..........+.+.|+++.+++ .+++.++++.||.|++||--+.++...+........|.+..|..+|+++++.+.
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 9776544444455667899999999 999999999999999999876665555544344568999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEE
Q 013086 280 DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
|..+++|.+.+++++......... .+........|+.. ..|+. +-.-..+.+.-||.+++..+..+
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~t---grq~~rtqAvFNht---------EdyVl--~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTT---GRQKHRTQAVFNHT---------EDYVL--FPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcc---cchhhhhhhhhcCc---------cceEE--ccccccCceeeccccchhhhhhc
Confidence 999999999999875432111111 11111112334433 22222 01233466889999999988888
Q ss_pred ecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 360 MDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 360 ~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
...|.+.+..+ .-+|.+..+++|+ |-.+|+|--
T Consensus 392 slgHn~a~R~i-~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 392 SLGHNGAVRWI-VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccCCCCCceEE-EeCCCCCceeeecccceeeeeee
Confidence 77776777777 7899999999999 899999964
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.7e-33 Score=274.91 Aligned_cols=291 Identities=15% Similarity=0.196 Sum_probs=220.4
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--------eeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
+..|.+.|.+++|+|+| .+||+|+.|+.|+||+..... ....+ .+...|.+++|++..+.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCC
Confidence 45699999999999999 689999999999999975421 11122 24568999999986578999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
+|++||+.+++.+..+..+.. .|.+++|+| ++.+|++|+.||.|++||++++...... . ....+.+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~---------~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~-~~~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEK---------RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---K-TKANICC 622 (793)
T ss_pred eEEEEECCCCeEEEEecCCCC---------CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---e-cCCCeEE
Confidence 999999999888777755443 399999997 7889999999999999999987654322 2 2247899
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
+.|++.++.+|++|+.||.|++||+++... ......+|...|.++.|. ++.+|++++.|+.|++||++.+.......
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~- 699 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET- 699 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-
Confidence 999765799999999999999999986432 122234799999999997 78899999999999999997542110000
Q ss_pred ceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe------------cCccce
Q 013086 300 IVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM------------DPNITT 366 (449)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~ 366 (449)
.. ..+.++.. ...+.|+|+ +.+++ +|+.|+.|++|+......+..+. .++...
T Consensus 700 ~l--~~~~gh~~~i~~v~~s~~---------~~~la---sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 700 PL--HSFMGHTNVKNFVGLSVS---------DGYIA---TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred ce--EEEcCCCCCeeEEEEcCC---------CCEEE---EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 01 11112221 234677777 66777 78999999999987665443322 112245
Q ss_pred eceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 367 ISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
+.++ +|+|++..|++|+ ||.|+||++
T Consensus 766 V~~v-~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSV-CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEE-EEcCCCCeEEEecCCCcEEEEec
Confidence 7777 8999999999999 999999986
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-34 Score=249.42 Aligned_cols=311 Identities=16% Similarity=0.230 Sum_probs=258.1
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
+.+..|++.|.++.|+|..+ +++++-.+|.|.|||.++...+..+ .....+|++..|-+. .+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec-cceEEEecCCceEEEEe
Confidence 34556899999999999995 6778888999999999999888888 567889999999998 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
..+++.+..+..|..- |.+++.+|...++++++.|-.|++||-...-...+.+..|.| .|++++|+|.+
T Consensus 84 ynt~ekV~~FeAH~Dy---------IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD 152 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDY---------IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKD 152 (794)
T ss_pred cccceeeEEeeccccc---------eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCC
Confidence 9999999999877654 999999999999999999999999999887666566566666 89999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
.+.+++++.|++|++|.+.+... .+...+|...|+|+.+-+ |..+|++|+.|..|+|||.++..+++...
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~--nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe------ 224 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHP--NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE------ 224 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCC--ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh------
Confidence 99999999999999999976544 333348999999999988 55799999999999999999887754322
Q ss_pred CCCccccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 305 DFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 305 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
+|... -.+.|+|. ..+ ++ +|+.||+++||+..+-++..++.-.- ..+.++ +-.+.++.++.|
T Consensus 225 ---GHt~Nvs~v~fhp~---lpi------ii---sgsEDGTvriWhs~Ty~lE~tLn~gl-eRvW~I-~~~k~~~~i~vG 287 (794)
T KOG0276|consen 225 ---GHTNNVSFVFFHPE---LPI------II---SGSEDGTVRIWNSKTYKLEKTLNYGL-ERVWCI-AAHKGDGKIAVG 287 (794)
T ss_pred ---cccccceEEEecCC---CcE------EE---EecCCccEEEecCcceehhhhhhcCC-ceEEEE-eecCCCCeEEEe
Confidence 22221 25677776 222 22 78999999999999998888876655 778888 677777889999
Q ss_pred CCCeEEEEcCCCchhhhhhhccceEEEEecCCc
Q 013086 384 SSRSIFIWRPKEKSELVEQKEEMKIIVCGKADK 416 (449)
Q Consensus 384 sdg~i~iw~~~~~~~~~~~~~~~~~~~c~~~~~ 416 (449)
.|....+..+..+++...+...++++.......
T Consensus 288 ~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 288 FDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred ccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 976666778888888888888887776654443
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=223.42 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=223.6
Q ss_pred EEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 111 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
..+++|.+.|.++.|+++ .+++++++.||.+.|||.-+......+.++.. .|..++|+|.+++++.|+.|
T Consensus 49 r~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcC
Confidence 344899999999999999 99999999999999999998888877766543 39999999999999999999
Q ss_pred CeEEEEECCCCCCc---cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 191 GFLYLVDARTNSRS---GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 191 g~i~i~d~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
+...||++.+.... ........|.+.+.+..|.+ .+.|++++.|.+..+||+.+++....+ .+|.+.|.++.+
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f--~GH~gDV~slsl 194 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVF--HGHTGDVMSLSL 194 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEe--cCCcccEEEEec
Confidence 99999999865211 22223556777999999985 667999999999999999875553332 389999999999
Q ss_pred cC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcce
Q 013086 268 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 345 (449)
Q Consensus 268 ~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i 345 (449)
+| +++.+++|+-|+..++||++.+.+.+. |.++.. +-.+.|.|+ |.-++ +|+.|++.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---------F~ghesDINsv~ffP~---------G~afa---tGSDD~tc 253 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---------FEGHESDINSVRFFPS---------GDAFA---TGSDDATC 253 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEe---------ecccccccceEEEccC---------CCeee---ecCCCcee
Confidence 99 999999999999999999999876432 222222 236889998 66666 89999999
Q ss_pred EEEECCCceEEEEEecCc-cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecC
Q 013086 346 DFIDITTGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 414 (449)
Q Consensus 346 ~iwd~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~ 414 (449)
++||++..+.+..+.... ...++++ +||..|++|.+|. |.++.+||.-.++.+..+.+|..-+.|-+.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv-~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSV-AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeE-EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 999999999998887443 3567777 9999999999988 999999999999999999999999888554
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=223.06 Aligned_cols=300 Identities=18% Similarity=0.199 Sum_probs=228.6
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
-.|+||..+++.+.|+.+| .+|++++.|.++.||-..+++.+..+ .+|.+.|.++..+.+ ...+++|+.|.++++||
T Consensus 4 i~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~-s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD-SKHLITGSADQTAKLWD 80 (327)
T ss_pred cccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC-cceeeeccccceeEEEE
Confidence 3588999999999999999 59999999999999999899999998 799999999999998 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-----CCeEEEEECCCCC----CccceEEeecCCCce
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDARTNS----RSGEAILIHRKGSKV 217 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~----~~~~~~~~~~~~~~v 217 (449)
+++|+.+..+..... |..+.|+++|+++++... .+.|.++|++... ..............+
T Consensus 81 v~tGk~la~~k~~~~----------Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 81 VETGKQLATWKTNSP----------VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred cCCCcEEEEeecCCe----------eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 999999998876543 999999999998888753 4689999998433 111233444555689
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
+.+-|.| -++.|++|..||.|.+||++++.. .+.. ..|...|+.|.++++..++++++.|.+-++||+.+-++++.
T Consensus 151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 151 TSALWGP-LGETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred eeeeecc-cCCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 9999999 999999999999999999997543 2222 25888999999999999999999999999999987765432
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEEcceecccC--CCCCC--cceEEEECCCceEEEEEecCccceeceeee
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAAL--HPIDFIDITTGQLVAEVMDPNITTISPVNK 372 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 372 (449)
.... ....+.+.+|.. ..+...|-.-+... +.... -.-++|++-..+.+..+.+|- +++.+| +
T Consensus 228 y~te---------~PvN~aaisP~~--d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsv-A 294 (327)
T KOG0643|consen 228 YTTE---------RPVNTAAISPLL--DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSV-A 294 (327)
T ss_pred eeec---------ccccceeccccc--ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCccee-E
Confidence 2111 111134555531 11111110000000 01111 123455554555666676765 899999 9
Q ss_pred cCCCCcEEeecC-CCeEEEEcCCC
Q 013086 373 LHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 373 ~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
|+|+|+..++|+ ||.||+..++.
T Consensus 295 fhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ECCCCcccccCCCCceEEEEEecc
Confidence 999999999999 99999986653
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=236.41 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=229.9
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|..+|+.+.|+|+ -..+++++.|++|++||..+++....++.+... +..++|+..|+++++++.|-.+
T Consensus 105 ~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s---------v~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDS---------VFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred hccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccc---------eeEEEEecCccEEEecCCccch
Confidence 569999999999999 889999999999999999999998887766554 9999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
.+||..+..........|.+ .|.++.|-| .+.++++++.|.+|+.|++.++-....+ .+|...|..+..+.||.+
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h--~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~--~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEH--GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTF--PGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHHHhcCccc--ceeeEEEEe-cCCeeeecccccceeEEecccceeEEec--cCchHhEEEEEecCCeeE
Confidence 99999875333333334444 799999999 8899999999999999999885553332 379999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEE------EcceecccCCCCCCcceEE
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV------IGRYISENYNGAALHPIDF 347 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~d~~i~i 347 (449)
+++++.|.+|++|-+.++++....+...+.. -+++|.|......+.. .|+++. +++.|++|++
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v--------Eci~wap~~~~~~i~~at~~~~~~~~l~---s~SrDktIk~ 318 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPV--------ECIAWAPESSYPSISEATGSTNGGQVLG---SGSRDKTIKI 318 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccce--------EEEEecccccCcchhhccCCCCCccEEE---eecccceEEE
Confidence 9999999999999999986644333221111 1567777643222211 135666 8999999999
Q ss_pred EECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecCCceeeee
Q 013086 348 IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHK 421 (449)
Q Consensus 348 wd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 421 (449)
||+.+|.++.++.+|. ..|..+ +|+|.|+||+++. |+++++||+++++++.....|.-+++|-.......+.
T Consensus 319 wdv~tg~cL~tL~ghd-nwVr~~-af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHD-NWVRGV-AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred EeccCCeEEEEEeccc-ceeeee-EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999999999988 788888 9999999999999 8999999999999999999999998887666554433
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-34 Score=258.85 Aligned_cols=211 Identities=22% Similarity=0.284 Sum_probs=190.1
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
....+.|-||+++|..+.|+|+. ++|++++.|++||+|.+.+....... .+|..+|.++.|+|. |-+|+|++.|++-
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~-GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR-GYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC-ceEEEecCCCcee
Confidence 34456799999999999999998 79999999999999999999999888 699999999999999 9999999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
++|........+.+..+... +.|+.|+|+..++++|+.|.+|++||+.++..+. .+.+|.++|.+++|
T Consensus 518 rLWs~d~~~PlRifaghlsD---------V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSD---------VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAF 585 (707)
T ss_pred eeeecccCCchhhhcccccc---------cceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEE
Confidence 99999998888888766554 9999999999999999999999999999998753 34556679999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+| +|.+|++|+.||.|.+||+.++.....+ .+|.+.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 586 Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 586 SP-CGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cC-CCceEeecccCCcEEEEEcCCCcchhhh--hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99 9999999999999999999876653333 479999999999999999999999999999998643
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=241.20 Aligned_cols=248 Identities=21% Similarity=0.361 Sum_probs=205.9
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
..++.|..+|.++.|+++| .++++|+.+|.|++|+..-....... ..|...|++++|+|+ ...|++++.||+|+|||
T Consensus 132 tilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk~~~-ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVKIIQ-AHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhHHhh-HhhhhhhheeccCCC-CceeEEecCCCeEEEEe
Confidence 4678999999999999999 68999999999999998654433332 446699999999998 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
....+....+..+.-. |.+++|+|...++++++.|..|++||.+++.++. ..+.|...|..+.|+| +
T Consensus 209 f~~~kee~vL~GHgwd---------VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~-n 275 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWD---------VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNP-N 275 (464)
T ss_pred ccCCchhheeccCCCC---------cceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhccceEEEEEEcC-C
Confidence 9888777776555433 9999999999999999999999999999998765 4566666899999999 8
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
+++|++++.|..++++|+++.+. .....+|...|+++.|+| ...+|.+|+.||.|..|.+...+ +...+..
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~---p~~~i~~--- 347 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE---PLGEIPP--- 347 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHH--HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc---cccCCCc---
Confidence 89999999999999999996554 333347999999999999 77789999999999999986222 2222222
Q ss_pred CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 306 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.....+..++|+|- |.+++ +|+.|.++++|.-.
T Consensus 348 -AHd~~iwsl~~hPl---------Ghil~---tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 348 -AHDGEIWSLAYHPL---------GHILA---TGSNDRTVRFWTRN 380 (464)
T ss_pred -ccccceeeeecccc---------ceeEe---ecCCCcceeeeccC
Confidence 22334468899998 88888 89999999999754
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=228.72 Aligned_cols=296 Identities=16% Similarity=0.152 Sum_probs=233.8
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.........+.+|++.|+++.|+.+| .+||||+.+|.|+||...++.....+. ..-..+.-+.|+|. ...|++|+.|
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~-a~illAG~~D 169 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR-AHILLAGSTD 169 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEeccc-ccEEEeecCC
Confidence 33444567899999999999999999 799999999999999999988877773 45677888999998 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
|.+.+|.+.++...+.+..+..+ +++=.|.|+|+.++++..||+|++|++.++++........ +....+
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~---------ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~ 238 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSP---------CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPC 238 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCC---------cccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCc
Confidence 99999999987666676554433 8888899999999999999999999999998764432222 336778
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee------ecCCCCcEEEEEEcC---CCCEEEEeeCCCcEEEEeCCC
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC------DLPHKRVVNSAYFSP---SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~ 290 (449)
+.++. .+..++.|+.++.+++-+..+++...... ...+...+.++.+.| .-.+.|+|+.||+|.|||+..
T Consensus 239 ~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 239 ISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc
Confidence 88887 88899999999998888776544322221 113444555555555 567789999999999999976
Q ss_pred CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceecee
Q 013086 291 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPV 370 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 370 (449)
.++.. ........+.+.|-+. .|+. ++..+|.|+.||.++|+++.++.+|. ..|..+
T Consensus 318 ~~~R~---------~c~he~~V~~l~w~~t----------~~l~---t~c~~g~v~~wDaRtG~l~~~y~GH~-~~Il~f 374 (399)
T KOG0296|consen 318 STLRH---------ICEHEDGVTKLKWLNT----------DYLL---TACANGKVRQWDARTGQLKFTYTGHQ-MGILDF 374 (399)
T ss_pred chhhe---------eccCCCceEEEEEcCc----------chhe---eeccCceEEeeeccccceEEEEecCc-hheeEE
Confidence 65421 1222223456777762 3333 68899999999999999999999998 778877
Q ss_pred eecCCCCcEEeecC-CCeEEEEcCC
Q 013086 371 NKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
+++|+.++++|+| |+..+||+..
T Consensus 375 -~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 375 -ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -EEcCCCcEEEEecCCCeEEEEecC
Confidence 8999999999999 9999999864
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-33 Score=247.21 Aligned_cols=294 Identities=16% Similarity=0.230 Sum_probs=241.9
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
....-..+.||...|.++++|.+. .++++|+ .+.|+||+..+.+++.++. .+.+.+..|-|. +.++++|...|.
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg-d~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPG-DRYIVLGTKNGE 435 (888)
T ss_pred cccceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCC-CceEEEeccCCc
Confidence 344445788999999999999987 5666665 5789999999999999884 338899999998 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc----cceE-----Eeec
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----GEAI-----LIHR 212 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~-----~~~~ 212 (449)
+.+||+.+...+.++..|... +..++.+||+..+++|+.|.+|++||..-.... ...+ ..-.
T Consensus 436 l~vfdlaS~~l~Eti~AHdga---------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGA---------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred eEEEEeehhhhhhhhhccccc---------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 999999999888888766554 999999999999999999999999997532210 0001 1112
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
-...|.|+.++| ++.+|+++-.|.++++|-+.+.+. .+..++|.-+|.||..+||+++++|||.|.+|++|-++.|.
T Consensus 507 l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 507 LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 234799999999 999999999999999999987554 45556999999999999999999999999999999999998
Q ss_pred CCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeee
Q 013086 293 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK 372 (449)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 372 (449)
+-+. -+...-+...+.|-|. ..++. +++.|+.|+-||-...+.++.+.+|+ ..+.++ +
T Consensus 584 CHKS--------~fAHdDSvm~V~F~P~---------~~~FF---t~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cL-a 641 (888)
T KOG0306|consen 584 CHKS--------FFAHDDSVMSVQFLPK---------THLFF---TCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCL-A 641 (888)
T ss_pred hhhh--------hhcccCceeEEEEccc---------ceeEE---EecCcceEEeechhhhhhheeeccch-heeeee-E
Confidence 7321 1112223357788886 33333 68899999999999999999999998 788888 8
Q ss_pred cCCCCcEEeecC-CCeEEEEcCCC
Q 013086 373 LHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 373 ~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
.+|+|.+++++| |.+|++|.-..
T Consensus 642 v~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 642 VSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999 99999998655
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=214.90 Aligned_cols=286 Identities=20% Similarity=0.246 Sum_probs=230.5
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE-EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
+.+++|...|.+++|+-+| ..|++|+.|+++.+|+++....... ...+|.+.|-.++|+|...++|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5678999999999999999 6799999999999999987643322 2368999999999999889999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|++.+++...+....+ -..+.|+|+|.++++++.|..|.+.|.++.+.... ......+..+.|+-
T Consensus 93 d~r~~k~~~~i~~~~e----------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGE----------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----EQFKFEVNEISWNN- 157 (313)
T ss_pred EeccCcEEEEeeccCc----------ceEEEEcCCCCEEEEecCcccEEEEEecccceeeh----hcccceeeeeeecC-
Confidence 9999999888765433 35678999999999999999999999998765532 22333688899995
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
++++++.....|.|.|......+....+ ..|.....||.|+|+|++||+|+.|..+.+||+..--+.. .
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si--~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R---------~ 226 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSI--KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER---------C 226 (313)
T ss_pred CCCEEEEecCCceEEEEecccccccccc--ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe---------e
Confidence 7777777777899999998765554443 3699999999999999999999999999999997544422 2
Q ss_pred CCccccce-eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 306 FNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 306 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
+.+.--++ .+.|+.+ |++++ +|++|..|-|-++++|..+..+... ++...| +|+|...+||.+.
T Consensus 227 isRldwpVRTlSFS~d---------g~~lA---SaSEDh~IDIA~vetGd~~~eI~~~--~~t~tV-AWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHD---------GRMLA---SASEDHFIDIAEVETGDRVWEIPCE--GPTFTV-AWHPKRPLLAYAC 291 (313)
T ss_pred eccccCceEEEEeccC---------cceee---ccCccceEEeEecccCCeEEEeecc--CCceeE-EecCCCceeeEEe
Confidence 22222121 4566666 99999 9999999999999999999988654 456677 9999999999865
Q ss_pred -C---------CeEEEEcCC
Q 013086 385 -S---------RSIFIWRPK 394 (449)
Q Consensus 385 -d---------g~i~iw~~~ 394 (449)
| |.++++-+.
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 3 466666543
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.9e-34 Score=221.40 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=237.5
Q ss_pred eeeeccCccEEEEEEeC---CCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 67 AVIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~---~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.+..||+.+|..++|+| +| .+|++++.|+.-.+-+-+++..+.++ .+|.+.|.+...+.+ ....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n-a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN-ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch-hhhhhhhcccchhh
Confidence 46789999999999985 67 78999999999999999999999999 799999999999988 88889999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+||.-+|..+..+... ..|.+++|+.|.++|++|+.+..+++||+...+.... ....+.+.|..+.|.
T Consensus 85 vw~a~tgdelhsf~hk----------hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 85 VWDAVTGDELHSFEHK----------HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWC 152 (334)
T ss_pred hhhhhhhhhhhhhhhh----------heeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEe
Confidence 9999999888776532 2389999999999999999999999999998776544 344556689999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
. ..+.|++.+.|++|++||.+++...+ .+....+|+++.++++|++|.++ ..+.|.+||..+-..++.....
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt~v~---sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P--- 224 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGTEVQ---SLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP--- 224 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCcEEE---EEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc---
Confidence 8 77778888999999999999865544 44467889999999999877655 4678999999877664422211
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
..+ -....+|+. +.|+ .|+.|..++.||..+|..+..+...+.++|.+| .|+|+|...++|
T Consensus 225 ----~nV--~SASL~P~k--------~~fV----aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV-rFSPdGE~yAsG 285 (334)
T KOG0278|consen 225 ----CNV--ESASLHPKK--------EFFV----AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-RFSPDGELYASG 285 (334)
T ss_pred ----ccc--ccccccCCC--------ceEE----ecCcceEEEEEeccCCceeeecccCCCCceEEE-EECCCCceeecc
Confidence 111 134556652 2233 489999999999999999998755555999999 999999999999
Q ss_pred C-CCeEEEEcCCCch
Q 013086 384 S-SRSIFIWRPKEKS 397 (449)
Q Consensus 384 s-dg~i~iw~~~~~~ 397 (449)
| ||+|+||....++
T Consensus 286 SEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCceEEEEEecCCC
Confidence 9 9999999987665
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-33 Score=251.23 Aligned_cols=295 Identities=19% Similarity=0.263 Sum_probs=242.6
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
|...+..|..++|+|..+ +++++-..|.|++||.+-+..+..+ ..|.++|+.++|+|+ ..+|++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC-CCeEEecCCccEEEEEecc
Confidence 444567899999999985 7888899999999999998888888 689999999999999 9999999999999999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+.+++.++..|..- |..+.|++.-.+|++++.|.+|+||+..+.+.+. ....|.| .|+|..|+| ...
T Consensus 82 ~rrclftL~GHlDY---------VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-vltGHnH--YVMcAqFhp-tED 148 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDY---------VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-VLTGHNH--YVMCAQFHP-TED 148 (1202)
T ss_pred cceehhhhccccce---------eEEeeccCCCceEEEccCCCeEEEEeccCCceEE-EEecCce--EEEeeccCC-ccc
Confidence 99998888666543 9999999999999999999999999999988764 3356666 999999999 999
Q ss_pred EEEEEeCCCeEEEEEccCCCCC-------------------------Cceee--cCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 229 LLLSCGNDHFARIWDIRRLEAG-------------------------SSLCD--LPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~-------------------------~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
+++++|.|.+|++||+...+.. ..++. -+|...|+-++|+|.-.++++|+.|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 9999999999999998643211 01111 17899999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
.|++|.+..-+.-... ...+|.. ..++.|+|. ...+. +.+.|++|+|||+...+.+++++
T Consensus 229 qVKlWrmnetKaWEvD-------tcrgH~nnVssvlfhp~---------q~lIl---SnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVD-------TCRGHYNNVSSVLFHPH---------QDLIL---SNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eeeEEEeccccceeeh-------hhhcccCCcceEEecCc---------cceeE---ecCCCccEEEEecccccceeeee
Confidence 9999999765442211 1122221 126788886 44444 78999999999999999999998
Q ss_pred cCccceeceeeecCCCCcEEeecCCCeEEEEcCCCchhhh
Q 013086 361 DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELV 400 (449)
Q Consensus 361 ~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~~~~ 400 (449)
..+ +..+.+ +.+|..+++++|-|+-+.+|.++...+..
T Consensus 290 ren-dRFW~l-aahP~lNLfAAgHDsGm~VFkleRErpa~ 327 (1202)
T KOG0292|consen 290 REN-DRFWIL-AAHPELNLFAAGHDSGMIVFKLERERPAY 327 (1202)
T ss_pred ccC-CeEEEE-EecCCcceeeeecCCceEEEEEcccCceE
Confidence 776 677777 89999999999998888888877544433
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=231.16 Aligned_cols=276 Identities=18% Similarity=0.279 Sum_probs=213.5
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
....|+|+.+.. ..+++|..|++|+|||..+..+...+ .||++.|.|+.|. .+.+++|+.|.+|++||+++|+
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCc
Confidence 456899999963 34899999999999999988887777 7999999999997 5699999999999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
++.++..+.+. |..+.|+ ..++++++.|..+.+||+.+...........+|...|+.+.|+. .+++
T Consensus 269 ~l~tlihHcea---------VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIV 334 (499)
T KOG0281|consen 269 PLNTLIHHCEA---------VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV 334 (499)
T ss_pred hhhHHhhhcce---------eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEE
Confidence 99888766554 7888885 57999999999999999988653322222334555899999964 6999
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (449)
+++.|.+|++|++.+.+....+ .+|...|-|+.+ .++++++|+.|.+|++||+..|.++.... ++..
T Consensus 335 sASgDRTikvW~~st~efvRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---------GHEe 401 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---------GHEE 401 (499)
T ss_pred EecCCceEEEEeccceeeehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---------chHH
Confidence 9999999999999886654443 279999988888 79999999999999999999998754221 1111
Q ss_pred ce-eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE---------EEEecCccceeceeeecCCCCcEEe
Q 013086 312 PF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV---------AEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 312 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
.+ ++.|+ .+.++ +|..||+|+|||+.++... .++..|. +.+..+ .| |...++
T Consensus 402 LvRciRFd-----------~krIV---SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs-gRVFrL-QF--D~fqIv 463 (499)
T KOG0281|consen 402 LVRCIRFD-----------NKRIV---SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS-GRVFRL-QF--DEFQII 463 (499)
T ss_pred hhhheeec-----------Cceee---eccccceEEEEecccccCCcccccchHHHhhhhcc-ceeEEE-ee--cceEEE
Confidence 11 23343 33344 7999999999999876533 2233333 456655 44 556788
Q ss_pred ecC-CCeEEEEcCCCchhh
Q 013086 382 SGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 382 s~s-dg~i~iw~~~~~~~~ 399 (449)
+++ |.+|-|||+..+-.-
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 888 999999999877544
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-30 Score=209.99 Aligned_cols=293 Identities=19% Similarity=0.293 Sum_probs=236.9
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC--CCeEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS--DGTVSC 144 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~i 144 (449)
+.|..-.+.|+++.|+++| .+|++++.|.+++|||..++.....+ ..+.-.+..++|... ...++.++. |.+|+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~-~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC-CceEEEccCCCCCceEE
Confidence 4556667889999999999 57888899999999999999998888 456678899999877 666666666 889999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
.++.+.+.++.+..|... |.+++.+|-+..+++++.|.+|++||++..++...+ +.. .-..++|.|
T Consensus 85 Lsl~dNkylRYF~GH~~~---------V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~--~~pi~AfDp 150 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKR---------VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---NLS--GRPIAAFDP 150 (311)
T ss_pred EEeecCceEEEcCCCCce---------EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---ecC--CCcceeECC
Confidence 999999999999877664 999999999999999999999999999977665422 222 244678999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
.|-++|++.....|++||+|....+...... +.....+.|.|||||++|+.+...+.+++.|.-+|........
T Consensus 151 -~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-- 227 (311)
T KOG1446|consen 151 -EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-- 227 (311)
T ss_pred -CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee--
Confidence 9999999998889999999987554433222 3467899999999999999999999999999998885332111
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
.......++.+.|.|+ |+++. +|+.||+|.+|++++|..+..+.+.+...+.++ .|+|....++
T Consensus 228 ---~~~~~~~~~~a~ftPd---------s~Fvl---~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~-~fnP~~~mf~ 291 (311)
T KOG1446|consen 228 ---YPNAGNLPLSATFTPD---------SKFVL---SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV-RFNPRYAMFV 291 (311)
T ss_pred ---ccCCCCcceeEEECCC---------CcEEE---EecCCCcEEEEEcCCCcEeeEecCCCCCCcccc-ccCCceeeee
Confidence 1111222357889998 88888 899999999999999999999999876777877 8999887777
Q ss_pred ecCCCeEEEEcCCCc
Q 013086 382 SGSSRSIFIWRPKEK 396 (449)
Q Consensus 382 s~sdg~i~iw~~~~~ 396 (449)
+++ ..+.+|-....
T Consensus 292 sa~-s~l~fw~p~~~ 305 (311)
T KOG1446|consen 292 SAS-SNLVFWLPDED 305 (311)
T ss_pred ecC-ceEEEEecccc
Confidence 766 67888866543
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.5e-32 Score=241.16 Aligned_cols=298 Identities=16% Similarity=0.179 Sum_probs=234.4
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
..+.+-|-.+.|..|+|-....+.||.++..+.+++|++.+..+. +..+|...|.++....+ +.+|++|+.|.++++
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~-g~llat~sKD~svil 391 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVIL 391 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeeccc-CcEEEEecCCceEEE
Confidence 345677888999999997655578999999999999998887766 44789999999995555 789999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccce--E----EeecCCCce
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA--I----LIHRKGSKV 217 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~----~~~~~~~~v 217 (449)
|.++.+.......... ..+...|.+++++..+ .+|++++.|.++++|++...+..... + ..+.|+..|
T Consensus 392 Wr~~~~~~~~~~~a~~-----~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQA-----NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred EEecCCcchhhhhhhh-----cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 9885543322211111 1122238888887655 58899999999999999873222111 1 224466689
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
++++++| +..++++||.|.+.+||++.+.. ....+ +|...|.++.|+|..+.|+|+|.|++|+||.+.+..+.+
T Consensus 467 N~Vaia~-ndkLiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk- 541 (775)
T KOG0319|consen 467 NCVAIAP-NDKLIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK- 541 (775)
T ss_pred cceEecC-CCceEEecccccceeeecccCce---EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee-
Confidence 9999999 99999999999999999998432 33333 899999999999999999999999999999999888754
Q ss_pred CccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 297 SREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
.+.+|.. .+++.|-.+ |..+. ++++||-|++|+++++.++.++..|. +.++++ +.+|
T Consensus 542 --------T~eGH~~aVlra~F~~~---------~~qli---S~~adGliKlWnikt~eC~~tlD~H~-DrvWaL-~~~~ 599 (775)
T KOG0319|consen 542 --------TFEGHTSAVLRASFIRN---------GKQLI---SAGADGLIKLWNIKTNECEMTLDAHN-DRVWAL-SVSP 599 (775)
T ss_pred --------eecCccceeEeeeeeeC---------CcEEE---eccCCCcEEEEeccchhhhhhhhhcc-ceeEEE-eecC
Confidence 3333332 245566555 66666 78999999999999999999999888 889988 8899
Q ss_pred CCcEEeecC-CCeEEEEcCCCch
Q 013086 376 RDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 376 ~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
...+++||+ ||.|.+|.=.|.+
T Consensus 600 ~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred ccceeEecCCCeEEEEeecCcHH
Confidence 999999999 9999999766554
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=225.25 Aligned_cols=290 Identities=18% Similarity=0.236 Sum_probs=240.5
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-------cccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.--|....+.|..|+||| ++|++|+.||.|-|||..+++....+. -.+...|.|+.|+.+ ...+++|+.||
T Consensus 208 IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDG 285 (508)
T ss_pred eecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCC
Confidence 334567789999999999 799999999999999998876543321 237889999999999 99999999999
Q ss_pred eEEEEeCCCCceeeeee-cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLETGLALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
.|++|.+++|.+++.+. .+.. .|+++.|+.|+..+++++.|.++++.-+++++.+.+ +.+|.+.|+.
T Consensus 286 kIKvWri~tG~ClRrFdrAHtk---------Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE---frGHsSyvn~ 353 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTK---------GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE---FRGHSSYVNE 353 (508)
T ss_pred cEEEEEEecchHHHHhhhhhcc---------CeeEEEEccCcchhhcccccceEEEeccccchhHHH---hcCccccccc
Confidence 99999999999999886 3333 399999999999999999999999999999987754 4556668999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
..|.+ ++..+++++.||+|++|+.++.++...+...+...+|+++..-| +...++++...+++.|.++.. +.+..
T Consensus 354 a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrs-- 429 (508)
T KOG0275|consen 354 ATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRS-- 429 (508)
T ss_pred eEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEee--
Confidence 99999 99999999999999999999988877777777888999999888 667899999999999999853 22111
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
.+.+.......+.++.+|. |.++- +.+.|+.++.|.+.+|++..++..|. ..+..+ +-+|..+
T Consensus 430 ---fsSGkREgGdFi~~~lSpk---------GewiY---cigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl-~HHPHqN 492 (508)
T KOG0275|consen 430 ---FSSGKREGGDFINAILSPK---------GEWIY---CIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGL-THHPHQN 492 (508)
T ss_pred ---eccCCccCCceEEEEecCC---------CcEEE---EEccCcEEEEEEeecCceeeeeeccc-cccccc-ccCcccc
Confidence 1111112222356777887 77665 67899999999999999999998887 556666 7999999
Q ss_pred EEeecC-CCeEEEEc
Q 013086 379 VLASGS-SRSIFIWR 392 (449)
Q Consensus 379 ~l~s~s-dg~i~iw~ 392 (449)
+||+-+ ||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999988 99999996
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-32 Score=220.43 Aligned_cols=250 Identities=21% Similarity=0.271 Sum_probs=201.2
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
...+|.+.|.++++.|. +.+|++|+.|++++|||+.+|+...++..+... +..+++++-..|+++++.|+
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~---------vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIET---------VRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhhe---------eeeeeecccCceEEEecCCC
Confidence 33789999999999999 999999999999999999999999888765543 89999999999999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
.|+.||+..++.+. ..+.|-+.|.+++.+| .-..|++|+.|.++++||+++... .....+|..+|.++.+.|-.
T Consensus 216 ~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~--V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIR---HYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS--VHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred eeEEEechhhhhHH---HhccccceeEEEeccc-cceeEEecCCcceEEEeeecccce--EEEecCCCCcceeEEeecCC
Confidence 99999999988765 3466667899999999 889999999999999999998544 33334899999999999988
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
..+++|+.|++|++||++.|+..... .....+..+++.+|. ...++ +++. ..|+-|++.
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tl--------t~hkksvral~lhP~---------e~~fA---Sas~-dnik~w~~p 348 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITL--------THHKKSVRALCLHPK---------ENLFA---SASP-DNIKQWKLP 348 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEee--------ecccceeeEEecCCc---------hhhhh---ccCC-ccceeccCC
Confidence 88999999999999999988753211 011111224555665 22223 3444 459999999
Q ss_pred CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhh
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 401 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~ 401 (449)
.|..++.+.+|. ..+.++ +...|+ ++++|+ .|.+.+||.++|-..+.
T Consensus 349 ~g~f~~nlsgh~-~iintl-~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 349 EGEFLQNLSGHN-AIINTL-SVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ccchhhcccccc-ceeeee-eeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 999999977776 777777 565555 677777 79999999999864443
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=228.18 Aligned_cols=310 Identities=17% Similarity=0.205 Sum_probs=229.3
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
-..|.+|+..|+++++.|.| ..|++|+.|..|++||+.... ....+.......|+++.|++. +..|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aq 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQ 237 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-CCeEEEEecCcc
Confidence 35789999999999999999 569999999999999997632 223333556778999999999 777777777889
Q ss_pred EEEEeCCCCceeeeeecCCCC---CCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEee---cCC
Q 013086 142 VSCTDLETGLALSLMNVNPNG---WHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIH---RKG 214 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~ 214 (449)
.+|+|-.............-. .....+...+++-+|+|.. ..+++++.||++++||+...+...+++... ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999997654444433322110 0112333458999999976 478999999999999998876554443322 223
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCC--cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.+++..+|++ ++.+||+|..||.|.+|+.........+... .|.. .|+||.||++|++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 4688999999 9999999999999999998665444333333 5666 8999999999999999999999999999864
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceee
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 371 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 371 (449)
+. ++. ...++........++|+|+ ..+.+.|..+. .+...+.+.+||..+...++.+.-.. ..+..+
T Consensus 397 kk--pL~---~~tgL~t~~~~tdc~FSPd---~kli~TGtS~~---~~~~~g~L~f~d~~t~d~v~ki~i~~-aSvv~~- 463 (641)
T KOG0772|consen 397 KK--PLN---VRTGLPTPFPGTDCCFSPD---DKLILTGTSAP---NGMTAGTLFFFDRMTLDTVYKIDIST-ASVVRC- 463 (641)
T ss_pred cc--chh---hhcCCCccCCCCccccCCC---ceEEEeccccc---CCCCCceEEEEeccceeeEEEecCCC-ceEEEE-
Confidence 42 111 1111222222236899998 34445565554 56667899999999999999987765 455555
Q ss_pred ecCCCCcEEeecC-CCeEEEE
Q 013086 372 KLHPRDDVLASGS-SRSIFIW 391 (449)
Q Consensus 372 ~~~~~~~~l~s~s-dg~i~iw 391 (449)
.|+|.-+.|..|+ ||.++|+
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eecchhhheeeecCCCceEEE
Confidence 6999988787777 9999887
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=227.77 Aligned_cols=316 Identities=16% Similarity=0.297 Sum_probs=242.0
Q ss_pred hHHhhhhhcCCCCCCCcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC
Q 013086 39 VEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC 118 (449)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~ 118 (449)
.++..++++...+...+-...+..+ .+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+....+...+ ..|.+
T Consensus 33 hPfe~~rEy~RALNAtKleR~fakP-Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G 110 (433)
T KOG0268|consen 33 HPFERAREYTRALNATKLERVFAKP-FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEG 110 (433)
T ss_pred ChhhhHHHHHHHhhhHHHHHHhhcc-chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccC
Confidence 3445555555555544333222222 246779999999999999987557999999999999999998888888 78999
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 198 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 198 (449)
.|..|++.. ..+++++.|.+|+.|-++. ....++.... .+..+..+..+..+++++. .|.|||.
T Consensus 111 ~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg~s----------~~~gIdh~~~~~~FaTcGe--~i~IWD~ 174 (433)
T KOG0268|consen 111 LVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILGKS----------VYLGIDHHRKNSVFATCGE--QIDIWDE 174 (433)
T ss_pred ceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeeccc----------cccccccccccccccccCc--eeeeccc
Confidence 999999985 5788999999999999875 3444443322 2666777777777888775 6999999
Q ss_pred CCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee
Q 013086 199 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
....++..+ ......|.++.|+|....+|+++..|+.|.+||+++....+.+. ....-+.|+|+|.+-.+++++
T Consensus 175 ~R~~Pv~sm---swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ 248 (433)
T KOG0268|consen 175 QRDNPVSSM---SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAAN 248 (433)
T ss_pred ccCCcccee---ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee---eeccccceecCccccceeecc
Confidence 887776543 22233699999999888899999999999999999866655443 334557899999888899999
Q ss_pred CCCcEEEEeCCCCCCCCCCccceecCCCCccccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEE
Q 013086 279 QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 357 (449)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~ 357 (449)
+|..++.||++.-.. ....+..+.+. +.+.|+|. |+-++ +|+-|.+|+||....+....
T Consensus 249 ED~nlY~~DmR~l~~--------p~~v~~dhvsAV~dVdfspt---------G~Efv---sgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSR--------PLNVHKDHVSAVMDVDFSPT---------GQEFV---SGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred ccccceehhhhhhcc--------cchhhcccceeEEEeccCCC---------cchhc---cccccceEEEeecCCCcchh
Confidence 999999999975332 12223334333 57899998 76666 79999999999999888777
Q ss_pred EEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 358 EVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 358 ~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
.+.......+.+| .||-|.+++++|| |++|++|.....+.+
T Consensus 309 iYhtkRMq~V~~V-k~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 309 IYHTKRMQHVFCV-KYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhhHhhhheeeEE-EEeccccEEEecCCCcceeeeecchhhhc
Confidence 7766666788888 9999999999999 899999987655433
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-32 Score=245.29 Aligned_cols=299 Identities=14% Similarity=0.151 Sum_probs=186.4
Q ss_pred eeee-ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc---------cCCceeEEEEeeC--CCC--e
Q 013086 67 AVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---------HSCIVNNIRFNPT--NDG--T 132 (449)
Q Consensus 67 ~~~~-~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~---------h~~~v~~~~~~~~--~~~--~ 132 (449)
+.++ +|.++|+++.|++|| +|||+|+.|+.|+||.+...+....-... ....+..+.-++. .+. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3455 899999999999999 89999999999999998652110000000 0000000000000 000 0
Q ss_pred EEEEeCCCe----EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 133 VYAASSDGT----VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 133 l~s~~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
.-.+..... .+++-+...-........ ..|..+.|+.+ ++|++++.|.+|++|++....++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt----------~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL---- 403 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT----------ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECL---- 403 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccc----------hhheecccccC-CeeEeccccccEEeecCCCccee----
Confidence 000000000 011111111111111000 01555666543 45666666666666666654433
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
....|...|+|++|+|.+.++|++|+-||.|+||++... +...-.....-|++++|.|+|++.++|+.+|.+++|+.
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC---eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 344556689999999999999999999999999999642 22222245578999999999999999999999999999
Q ss_pred CCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 289 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
...++.....-......-..+..+..+.|.|..+... + ..+.|..|+|||.++..++..|.+.+...-.
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~v-------L----VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEV-------L----VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeE-------E----EecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 8766533222111111111122345677777765422 2 2578999999999999999999877644433
Q ss_pred eeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 369 PVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 369 ~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
.-+.|+.||++|++|+ |..|+||+...
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3337999999999999 99999999744
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=239.21 Aligned_cols=256 Identities=22% Similarity=0.342 Sum_probs=208.2
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
+...|.++.|+++ +..+++++.++.+++|+....+ ....+..+ ...|..++|+|++.++++++.|++|
T Consensus 158 ~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h---------~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 158 ECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGH---------TRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhcccccc---------ccceeeeEECCCCcEEEEecCCceE
Confidence 4788999999999 8899999999999999997666 33333222 2349999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
++||+...... +.....|...|++++|+| .++++++|+.|++|+|||+++++....+ .+|...|++++|++++.+
T Consensus 228 riwd~~~~~~~--~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l--~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 228 RIWDLKDDGRN--LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKL--KGHSDGISGLAFSPDGNL 302 (456)
T ss_pred EEeeccCCCeE--EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEee--eccCCceEEEEECCCCCE
Confidence 99999544332 224446666999999999 7799999999999999999985543333 269999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCC--CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 274 ILTTSQDNRLRIWDSIFGNLD--SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
|++++.|+.|++||+.++... ... .... .......+.|+|+ |.|+. ++..|+.+++||+.
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~----~~~~--~~~~~~~~~fsp~---------~~~ll---~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLL----SGAE--NSAPVTSVQFSPN---------GKYLL---SASLDRTLKLWDLR 364 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecc----cCCC--CCCceeEEEECCC---------CcEEE---EecCCCeEEEEEcc
Confidence 999999999999999998832 111 1111 1102247889998 88888 78999999999999
Q ss_pred CceEEEEEecCccc--eeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 352 TGQLVAEVMDPNIT--TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 352 ~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
.+..+..+.+|... .+... ..++.+.++++|+ |+.|.+|++.++..+..+.+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSP-TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCcceeeecccCCcceeEecc-cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 99999999998865 33333 4578899999999 999999999999999999999
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-31 Score=203.87 Aligned_cols=258 Identities=16% Similarity=0.187 Sum_probs=214.9
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
....+.++|.++.|+-+ +++.++++.|.+|++|+...+.+++++..+... |..++.+.|+..+++++.|.
T Consensus 12 ~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~E---------VlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE---------VLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred eecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCce---------eeeccccccccccccCCCCc
Confidence 34679999999999999 999999999999999999999999999766543 99999999999999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 270 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 270 (449)
.+.+||+.+++... .+..|.+.|+.++|+. +...+++|+.|..+++||-++... ..++.+ .....|.++.. .
T Consensus 82 ~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v--~ 154 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDR---RFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDV--A 154 (307)
T ss_pred eEEEEEcccCeeee---ecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEe--c
Confidence 99999999998764 4556677999999998 899999999999999999987544 334444 56778999988 4
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
+..+++|+.||+++.||++.|.+.. ..+... ..++.|+++ |+... .++.++++++.|-
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~s--------Dy~g~p--it~vs~s~d---------~nc~L---a~~l~stlrLlDk 212 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSS--------DYFGHP--ITSVSFSKD---------GNCSL---ASSLDSTLRLLDK 212 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeeh--------hhcCCc--ceeEEecCC---------CCEEE---Eeeccceeeeccc
Confidence 6789999999999999999988632 111111 136788888 55554 5788999999999
Q ss_pred CCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE
Q 013086 351 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 351 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
.+|+++..+.+|......-=++++.....+++|+ ||.|++||+..+..+..+..++.+
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 9999999999987554332226888888999999 999999999999988888877766
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.2e-32 Score=230.06 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=205.6
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
.+.|+++|.||..+|..++|+++| .-+++++.|+.|++||++++.+...+. ....++++.|+|++.+.|++|+.|+.
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred CcceehhhhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCc
Confidence 467889999999999999999999 568999999999999999999999885 56678999999996589999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
|+.||+++++.+..+..+... |..+.|-++++.+++++.|+.+++|+.+..-.+........+ ...++.
T Consensus 324 i~~wDiRs~kvvqeYd~hLg~---------i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h--smP~~~ 392 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEYDRHLGA---------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH--TMPCLT 392 (503)
T ss_pred EEEEeccchHHHHHHHhhhhh---------eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhc--cCccee
Confidence 999999999988887655443 999999999999999999999999999987766544344444 678999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CC--CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH--KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
.+| ++.++++-+.|..|.+|.+...-.......+ +| .+.-..+.|||||.+|++|+.||.+.+||.++-++...
T Consensus 393 ~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~-- 469 (503)
T KOG0282|consen 393 LHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK-- 469 (503)
T ss_pred cCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc--
Confidence 999 9999999999999999997542221111112 34 34566789999999999999999999999988766432
Q ss_pred cceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 299 EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 299 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
+..+ ...+.+.|+|..++... +++.+|.|++||
T Consensus 470 -------lkah~~~ci~v~wHP~e~Skva-----------t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 -------LKAHDQPCIGVDWHPVEPSKVA-----------TCGWDGLIKIWD 503 (503)
T ss_pred -------cccCCcceEEEEecCCCcceeE-----------ecccCceeEecC
Confidence 1122 23357899998643222 567999999996
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=7.3e-32 Score=225.17 Aligned_cols=290 Identities=19% Similarity=0.262 Sum_probs=236.8
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
.+...+..|.+.|..+.|-++.+ .|++|+.|..|++|++.... ...++ .+..++|+++.|.++ +.++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~-~~~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD-NKHVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC-CceEEeecCCCc
Confidence 34567899999999999999863 69999999999999987765 33444 677889999999999 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+++|++...+...++..|... |+++.|......+++|+.|.+|++||+....+...++. .+.+..|+
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdk---------Vt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~ 309 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDK---------VTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIV 309 (459)
T ss_pred eeeeeccchhhhhhhcccccc---------eeeehhhccccceeeccccchhhhhhhhhhheeccccc----cccccceE
Confidence 999999999999888776654 89999888777799999999999999998665543322 22566777
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
.++ ..+++|..|+.|++||+++..... ..+..+.|+++..++++..|++++.|.++.+.|+++.+...+..-
T Consensus 310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~---sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-- 381 (459)
T KOG0288|consen 310 CSI---SDVISGHFDKKVRFWDIRSADKTR---SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-- 381 (459)
T ss_pred ecc---eeeeecccccceEEEeccCCceee---EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec--
Confidence 653 678999999999999998755433 334556899999999999999999999999999998776443221
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccc-eeceeeecCCCCcEE
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT-TISPVNKLHPRDDVL 380 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~l 380 (449)
..+.....-..+.|+|+ +.|++ .|+.||.|+||++.++++...+...+.. .|.++ +|+|.|..|
T Consensus 382 --~g~k~asDwtrvvfSpd---------~~Yva---AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~-~W~~sG~~L 446 (459)
T KOG0288|consen 382 --EGFKCASDWTRVVFSPD---------GSYVA---AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL-SWNPSGSGL 446 (459)
T ss_pred --cccccccccceeEECCC---------Cceee---eccCCCcEEEEEccCceEEEEeccCCCCcceEEE-EEcCCCchh
Confidence 11111111237889998 89998 8999999999999999999998876644 68888 999999999
Q ss_pred eecC-CCeEEEEc
Q 013086 381 ASGS-SRSIFIWR 392 (449)
Q Consensus 381 ~s~s-dg~i~iw~ 392 (449)
++++ ++.+.+|.
T Consensus 447 lsadk~~~v~lW~ 459 (459)
T KOG0288|consen 447 LSADKQKAVTLWT 459 (459)
T ss_pred hcccCCcceEecC
Confidence 9999 99999993
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.7e-31 Score=205.85 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=175.4
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
-.+.+..++|+++.+..+++++.||+++|||+.....+....+.|...|.++.|++..+..+++++.|++|++|+....+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 36789999999998888999999999999998766655555588999999999999878889999999999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
.+.++..+.. .|...+|+| ..+++++++.|+.+++||++..... +.+..|...+.+..|+..+.+++
T Consensus 139 Sv~Tf~gh~~---------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 SVQTFNGHNS---------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCcc---------EEEEEecCCCCCCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeecccccCCcEE
Confidence 9988876544 399999999 4679999999999999999876432 23455556899999999899999
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 290 (449)
++|+.|+.|+.||+++.+.. .....+|.-.|..+.||| ...+|++++.|-+++|||...
T Consensus 207 ~Tg~vd~~vr~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred EecCCCceEEEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 99999999999999986652 333348999999999999 567899999999999999853
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4e-30 Score=227.83 Aligned_cols=279 Identities=19% Similarity=0.297 Sum_probs=224.2
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 156 (449)
+-+.|+..+ .||+|. ...|.+|+..++...... ..+...|+++.|+++ +.+|++|..+|.|.|||..+.+.+..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTELC-SFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEeE-ecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccc
Confidence 346778554 577765 458999999888755555 334899999999999 999999999999999999998888887
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
..+.. ..|-+++|. +..+.+|+.++.|..+|++..+..... ...|...|..++|++ ++.++++|+.|
T Consensus 256 ~~~h~--------~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~-d~~~lASGgnD 322 (484)
T KOG0305|consen 256 RGSHA--------SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSP-DGNQLASGGND 322 (484)
T ss_pred cCCcC--------ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECC-CCCeeccCCCc
Confidence 66211 238999998 778999999999999999998766553 344445899999999 99999999999
Q ss_pred CeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEee--CCCcEEEEeCCCCCCCCCCccceecCCCCccccce
Q 013086 237 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 313 (449)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (449)
+.+.|||...... .+....|.+.|..++|+| ...+||+|+ .|+.|++||..+|..+.. ......+.
T Consensus 323 N~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVc 391 (484)
T KOG0305|consen 323 NVVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVC 391 (484)
T ss_pred cceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCcee
Confidence 9999999954333 455558999999999999 778899876 499999999998876432 12222234
Q ss_pred eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 314 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
.+.|++... +++.. -|..++.|.||+..+.+.+..+.+|. ..|..+ +++|||..+++|+ |.++++|+
T Consensus 392 sL~Wsk~~k--------Ei~st--hG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~l-a~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 392 SLIWSKKYK--------ELLST--HGYSENQITLWKYPSMKLVAELLGHT-SRVLYL-ALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred eEEEcCCCC--------EEEEe--cCCCCCcEEEEeccccceeeeecCCc-ceeEEE-EECCCCCEEEEecccCcEEecc
Confidence 789999841 22211 47788899999999999999999998 557777 8999999999999 99999999
Q ss_pred CCCc
Q 013086 393 PKEK 396 (449)
Q Consensus 393 ~~~~ 396 (449)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=1.1e-31 Score=219.54 Aligned_cols=266 Identities=17% Similarity=0.240 Sum_probs=201.3
Q ss_pred CCCCCCcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC
Q 013086 49 PNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT 128 (449)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 128 (449)
+........|......|.+.|.||++.|.|+.|.. +++++|+.|.+|+|||+++++++.++ -.|...|..+.|+
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~-- 286 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFS-- 286 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEe--
Confidence 34444555677777889999999999999999963 68999999999999999999999888 5799999999998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceee---eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc
Q 013086 129 NDGTVYAASSDGTVSCTDLETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 205 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 205 (449)
+.++++++.|.++.+||+.....+. .+..+. ..|..+.|+ .+++++++.|.+|++|++.+...+.
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr---------AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---------AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred -CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh---------hheeeeccc--cceEEEecCCceEEEEeccceeeeh
Confidence 5699999999999999998754322 222222 237777774 5699999999999999999988764
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
..+.|...|.|+.+ .+.++++|+.|.+|++||+..+.....+ .+|+.-|.++.| +.+.+++|+.||.|++
T Consensus 355 ---tl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvL--eGHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 355 ---TLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred ---hhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHH--hchHHhhhheee--cCceeeeccccceEEE
Confidence 23444446888877 6799999999999999999875543333 279999999999 6789999999999999
Q ss_pred EeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE
Q 013086 286 WDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
||+.++..-......+.......+. ..+.+.|+. ..+. +.+.|.+|-|||..++..-
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-----------fqIv---sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-----------FQII---SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeecc-----------eEEE---eccCCCeEEEEEcCCCCcc
Confidence 9998776533222222211211221 334445443 2222 5788999999999877544
No 58
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.5e-29 Score=204.77 Aligned_cols=314 Identities=17% Similarity=0.188 Sum_probs=223.5
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE---EecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV---YGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
+..+..|++|.+.|++++|+.|| +.|+|++.|+.|+||++........ ...-.-+..+.+.|.|+-...++++-..
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 44567899999999999999999 7899999999999999976321110 0011223568899999955566666667
Q ss_pred CeEEEEeCCCCceeeeeecCCCCC----CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGW----HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
.++++|-+...+- .....+.-.+ -...+...+..+-....+.+|++++.|..|.+|+++ ++.+. .......
T Consensus 155 ~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---~idtnq~ 229 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---SIDTNQS 229 (420)
T ss_pred CEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee---eeccccc
Confidence 7899997653221 1111111110 011222336667777788999999999999999999 55443 2233334
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC------CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.-+..+++| +|+++++++..-.|++|.+--.+. .+.+...+|.+.|..++|+++...+++.+.||.++|||.+
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 567789999 999999999999999998743222 2334444899999999999999999999999999999986
Q ss_pred CCCCCCCCccceecC---CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccce
Q 013086 290 FGNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 366 (449)
Q Consensus 290 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 366 (449)
-.-.......++... .......++++..+|. |+.++ .+....+++|..++|+....+..-+...
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~---------g~~lA----~s~gs~l~~~~se~g~~~~~~e~~h~~~ 375 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS---------GDSLA----VSFGSDLKVFASEDGKDYPELEDIHSTT 375 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCC---------CcEEE----eecCCceEEEEcccCccchhHHHhhcCc
Confidence 432222222222111 1112223457788887 66555 3444679999999999888888777788
Q ss_pred eceeeecCCCCcEEeecCCCeEEEEcCCCch
Q 013086 367 ISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
|.++ +|+++|++++|++|..+++..-..|-
T Consensus 376 Is~i-s~~~~g~~~atcGdr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 376 ISSI-SYSSDGKYIATCGDRYVRVIRNTPGW 405 (420)
T ss_pred eeeE-EecCCCcEEeeecceeeeeecCCCch
Confidence 9999 99999999999999999999855553
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.6e-30 Score=205.95 Aligned_cols=266 Identities=15% Similarity=0.204 Sum_probs=208.0
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
...+|.+.|+.+.|+|+ +.+|++|+.|..|.+|++... +....+..+.. .|..+.|.++++.+++++.|
T Consensus 42 ~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg---------AVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG---------AVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred hcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccc---------eeEeeeeccCCCEEEEecCC
Confidence 34789999999999998 999999999999999996532 33344444433 39999999999999999999
Q ss_pred CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC
Q 013086 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 270 (449)
Q Consensus 191 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (449)
..++.||.++++...+ ...+..-++++.-+.....++.+++.|+++++||+|+... ++.+....+++++.|..+
T Consensus 112 k~v~~wD~~tG~~~rk---~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRK---HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTFENKYQLTAVGFKDT 185 (338)
T ss_pred ceEEEEecccceeeeh---hccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhccccceeEEEEEeccc
Confidence 9999999999987643 3344447888876654567888999999999999997444 444456778999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
+..+.+|+-|+.|++||++.+... +...++..+ +.+.-+|. |.++. +-+.|+++++||
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~---------~~lsGh~DtIt~lsls~~---------gs~ll---snsMd~tvrvwd 244 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGL---------YTLSGHADTITGLSLSRY---------GSFLL---SNSMDNTVRVWD 244 (338)
T ss_pred ccceeeccccCceeeeccccCcce---------EEeecccCceeeEEeccC---------CCccc---cccccceEEEEE
Confidence 999999999999999999876652 222333332 23455555 66666 788999999999
Q ss_pred CCC----ceEEEEEecCccc---eeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecCC
Q 013086 350 ITT----GQLVAEVMDPNIT---TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKAD 415 (449)
Q Consensus 350 ~~~----~~~~~~~~~~~~~---~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~~ 415 (449)
++. .+++..+.++... ....+ +|+|+++.+.+|+ |..+++||..+...+..+.+|...+.|-...
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~c-swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKC-SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhccee-eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 874 3457777766432 22333 8999999999999 9999999999999999999998877765443
No 60
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.9e-30 Score=205.40 Aligned_cols=299 Identities=15% Similarity=0.214 Sum_probs=217.3
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 155 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 155 (449)
-.|+.|++.| .+||+|+.||.|.|||+.+...-..+ .+|..+|.+++|+++ ++.|+|++.|..+.+||+..|.++..
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999 69999999999999999987755555 789999999999999 99999999999999999999999998
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCE-EEEEcCCCeEEEEECCCCCCccceEEeecC---CCceEEEEEcCCCCCEEE
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRK---GSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~ 231 (449)
+.+... |..+.|+|.... .++.-.+..-.+.++..... ..+..... .....+..|.+ .+++++
T Consensus 103 irf~sp----------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr-~g~yIi 169 (405)
T KOG1273|consen 103 IRFDSP----------VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDR-RGKYII 169 (405)
T ss_pred EEccCc----------cceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccC-CCCEEE
Confidence 887654 899999996543 33333333344444443211 11111110 11122335777 999999
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL- 310 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~- 310 (449)
+|...|.+.++|..+.+....++.. ....|.++.++..|+.|+..+.|..||.|+++.-........+...+.+...+
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EecCcceEEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 9999999999999987665554432 24679999999999999999999999999986321111111111111111100
Q ss_pred --cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeE
Q 013086 311 --TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSI 388 (449)
Q Consensus 311 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i 388 (449)
.=-+++|+.+ |.|+.+ +......++||....|.++..+.+........| .|+|-...+++-..|.+
T Consensus 249 k~~Wk~ccfs~d---------geYv~a--~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV-~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 249 KLQWKKCCFSGD---------GEYVCA--GSARAHALYIWEKSIGSLVKILHGTKGEELLDV-NWHPVRPIIASIASGVV 316 (405)
T ss_pred hhhhhheeecCC---------ccEEEe--ccccceeEEEEecCCcceeeeecCCchhheeec-ccccceeeeeeccCCce
Confidence 0014667765 777763 235567899999999999999998886777788 89999999998888999
Q ss_pred EEEcCCCchhhhhhh
Q 013086 389 FIWRPKEKSELVEQK 403 (449)
Q Consensus 389 ~iw~~~~~~~~~~~~ 403 (449)
+||..........+.
T Consensus 317 ~iw~~~~~enwsafA 331 (405)
T KOG1273|consen 317 YIWAVVQVENWSAFA 331 (405)
T ss_pred EEEEeecccchhhcC
Confidence 999877665444443
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=232.01 Aligned_cols=293 Identities=16% Similarity=0.193 Sum_probs=224.7
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
....|.+....++..|..|.++|..+.|+|.++ ++++|+.|-.|+||+..+.+++.++ .+|-.-|+.+.|++. ...+
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe-yPWI 108 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE-YPWI 108 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC-CceE
Confidence 334677777888999999999999999999995 8999999999999999999999888 799999999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc----c----
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----G---- 205 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~---- 205 (449)
+++|.|.+|+||+..+++++..++.|.. .|.|.+|+|...++++++-|.+|++||+...+.. .
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGHnH---------YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~ 179 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGHNH---------YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLED 179 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecCce---------EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchh
Confidence 9999999999999999999999976544 2999999999999999999999999998532110 0
Q ss_pred ---------ce---------EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 206 ---------EA---------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 206 ---------~~---------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
.+ ....+|...|+.++|+| .-.+|++|+.|..|++|.+...+.-..-...+|...|+++.|
T Consensus 180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF 258 (1202)
T ss_pred hhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe
Confidence 00 11234455799999999 889999999999999999976444333333389999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEE
Q 013086 268 SPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 347 (449)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~i 347 (449)
+|...++++.|+|++|+|||+...+.++..+ +. +...+.++-+|. .++++ ++.|+-+.|
T Consensus 259 hp~q~lIlSnsEDksirVwDm~kRt~v~tfr-----re---ndRFW~laahP~---------lNLfA----AgHDsGm~V 317 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-----RE---NDRFWILAAHPE---------LNLFA----AGHDSGMIV 317 (1202)
T ss_pred cCccceeEecCCCccEEEEecccccceeeee-----cc---CCeEEEEEecCC---------cceee----eecCCceEE
Confidence 9999999999999999999998766533211 01 111234555565 44444 456666767
Q ss_pred EECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCc
Q 013086 348 IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 396 (449)
Q Consensus 348 wd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~ 396 (449)
|.++..++..-+ +++.|...-|..|+-+|+.+.
T Consensus 318 FkleRErpa~~v----------------~~n~LfYvkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 318 FKLERERPAYAV----------------NGNGLFYVKDRFIRSYDLRTQ 350 (1202)
T ss_pred EEEcccCceEEE----------------cCCEEEEEccceEEeeecccc
Confidence 766544332221 233333334677777777763
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=6.7e-29 Score=228.58 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=227.8
Q ss_pred eeeec-cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 67 AVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 67 ~~~~~-h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
..+.+ |...|.+..|. ++ .+++++.+++|++|+..++..+.....+|.+.|.++++... +.++++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeE
Confidence 34444 67789999998 33 58999999999999999999888855899999999999875 8899999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|..+|++...+..+... +.++.. ....+++|+.|.+|++|++.++..+. ....+..+|.++..+
T Consensus 277 d~~sg~C~~~l~gh~st---------v~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSS---------VRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD-- 340 (537)
T ss_pred ecCCCcEEEEecCCCce---------EEEEEc--cCceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--
Confidence 99999999999766543 666554 45678888999999999999877653 223367799999995
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCccceecC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG-NLDSPSREIVHSH 304 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 304 (449)
+.++++|+.|++|.+||+.+.+....+ .+|...|.++.+.+. ..+++|+.|+.|++||+++. ++....
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl--~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl------- 409 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSL--SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL------- 409 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeee--cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-------
Confidence 689999999999999999975554333 279999999988655 89999999999999999988 553211
Q ss_pred CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 305 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
.++.. -...+...++++. +++.|++|++||..+++++..+.+++...+..+ ++. ...+++++
T Consensus 410 --~~h~~----------~v~~l~~~~~~Lv---s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l-~~~--~~~il~s~ 471 (537)
T KOG0274|consen 410 --QGHTS----------LVSSLLLRDNFLV---SSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL-ALG--KEEILCSS 471 (537)
T ss_pred --cCCcc----------cccccccccceeE---eccccccEEEeecccCceeeeeccCCcccEEEe-ecC--cceEEEEe
Confidence 11111 1122333366666 799999999999999999999998644677755 343 34555555
Q ss_pred -CCeEEEEcCCCchhhhhhh
Q 013086 385 -SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 385 -dg~i~iw~~~~~~~~~~~~ 403 (449)
||.+++||+.+++....+.
T Consensus 472 ~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred cCCeeEEEecccCchhhhhh
Confidence 9999999999999888773
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.8e-29 Score=205.38 Aligned_cols=289 Identities=16% Similarity=0.241 Sum_probs=218.2
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC--CCeEEEEeCCCeEEEEeCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~ 148 (449)
-|.+-|.++... + ..+++|+.||.+++||.... ....+ .+|.++|.+++|.-.+ ...|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~-~~IltgsYDg~~riWd~~Gk-~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--S-KWILTGSYDGTSRIWDLKGK-SIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--C-ceEEEeecCCeeEEEecCCc-eEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 388899999887 3 57999999999999998654 44444 6899999999987541 3359999999999999998
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCC----------------------Cccc
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS----------------------RSGE 206 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~ 206 (449)
.+........... .+...|.+++..+++..+++|+.|.+|.+|+..+.. ....
T Consensus 178 ~~~~~~~~~~~~~-----GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 178 VGENKVKALKVCR-----GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred CchhhhhHHhHhc-----ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 7765433221111 222349999999999999999999999999932110 0112
Q ss_pred eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 207 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
+....+|..+|.++.|++ ...+.+++.|.+|+.||+.++.....+ .....++++..+|..++|++|+.|..|++|
T Consensus 253 ~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred eEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee---ecCcceeEeecccccceeeecCCCCceeec
Confidence 234556677999999995 778999999999999999876554333 356789999999999999999999999999
Q ss_pred eCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce-EEEEEecCcc
Q 013086 287 DSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNI 364 (449)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~ 364 (449)
|.+++.-.. ....+.+|.. .-.+.|+|.... .++ +|+.|+++++||+++.+ +++.+.+|.
T Consensus 328 DPR~~~gs~------v~~s~~gH~nwVssvkwsp~~~~--------~~~---S~S~D~t~klWDvRS~k~plydI~~h~- 389 (423)
T KOG0313|consen 328 DPRTGDGSV------VSQSLIGHKNWVSSVKWSPTNEF--------QLV---SGSYDNTVKLWDVRSTKAPLYDIAGHN- 389 (423)
T ss_pred CCCCCCCce------eEEeeecchhhhhheecCCCCce--------EEE---EEecCCeEEEEEeccCCCcceeeccCC-
Confidence 999874321 1122222221 126889998421 112 68999999999999887 899998886
Q ss_pred ceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 365 TTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 365 ~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..+.++ .|.. +.+|++|+ |.+|+|+.-.
T Consensus 390 DKvl~v-dW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 390 DKVLSV-DWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEE-eccC-CceEEeccCcceEEEeccc
Confidence 778877 7754 66899999 9999998643
No 64
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-28 Score=226.36 Aligned_cols=212 Identities=16% Similarity=0.304 Sum_probs=166.7
Q ss_pred eeeeccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCCe-------eeEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 67 AVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
..+.||.+.|++++|+| ++ .+|++|+.|++|+|||+.+.. .+..+ .+|...|.+++|+|+..++|++++.
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 35889999999999999 66 689999999999999997642 23334 7899999999999984579999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC-ce
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KV 217 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v 217 (449)
|++|++||+.+++....+..+.. .|.+++|+|++.+|++++.|+.|++||+++++.... ...+.. ..
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~---------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t---l~~H~~~~~ 214 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSD---------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS---VEAHASAKS 214 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCC---------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE---EecCCCCcc
Confidence 99999999999987777654433 399999999999999999999999999998775432 223322 34
Q ss_pred EEEEEcCCCCCEEEEEe----CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCC
Q 013086 218 VGLHCNPIQPELLLSCG----NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGN 292 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~ 292 (449)
..+.|.+ ++..+++++ .|+.|++||+++...............+....|++++++|++++ .|+.|++||+.+++
T Consensus 215 ~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 215 QRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 5678888 666666544 47899999998754422222223445566778999999999887 49999999998776
Q ss_pred C
Q 013086 293 L 293 (449)
Q Consensus 293 ~ 293 (449)
.
T Consensus 294 ~ 294 (493)
T PTZ00421 294 L 294 (493)
T ss_pred e
Confidence 4
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=219.84 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=236.7
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
...-.+.||+.+|+++.|+..| ..|++|+.|+.|.|||+-...-...+ .+|...|+.+-|... ..++++.+.|+.|+
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G-~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~-~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIG-TRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG-DSFLVSVSKDSMIK 174 (888)
T ss_pred ceeeeecccccceEEEEEcccC-ceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC-CeEEEEeccCceEE
Confidence 4556889999999999999999 57999999999999999988888877 799999999999987 88999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC----------------------
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN---------------------- 201 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------- 201 (449)
+||+.+..+..+...+... ++++++.+ +.+++++.++.+.+|++...
T Consensus 175 ~WdL~tqhCf~Thvd~r~E---------iw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs 243 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGE---------IWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS 243 (888)
T ss_pred EEecccceeeeEEecccce---------EEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc
Confidence 9999998887776554433 77777766 67777777888888876100
Q ss_pred -------------C------------------------------------------------------------------
Q 013086 202 -------------S------------------------------------------------------------------ 202 (449)
Q Consensus 202 -------------~------------------------------------------------------------------ 202 (449)
.
T Consensus 244 k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ki 323 (888)
T KOG0306|consen 244 KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKI 323 (888)
T ss_pred CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhe
Confidence 0
Q ss_pred ----------Cc-------------------cc---------eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 013086 203 ----------RS-------------------GE---------AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244 (449)
Q Consensus 203 ----------~~-------------------~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 244 (449)
.. .. .+....|...|.+++++. +...+++|+ .+.|++|+.
T Consensus 324 ks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga-~~SikiWn~ 401 (888)
T KOG0306|consen 324 KSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGA-GESIKIWNR 401 (888)
T ss_pred eEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecC-CCcEEEEEc
Confidence 00 00 001112233466666665 444444443 567777777
Q ss_pred cCCCCCC-------------------------------------ceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 245 RRLEAGS-------------------------------------SLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 245 ~~~~~~~-------------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
.+.+... .+.. ..|.+.|.+++.+||++.+++||.|.+|++|
T Consensus 402 ~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 402 DTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 6544311 0111 1589999999999999999999999999999
Q ss_pred eCCCCCCCCCC----ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 287 DSIFGNLDSPS----REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 287 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
|..--.-.... -.+.+...+.-....+++.++|+ |+|++ .+--|++++||-+.+-+..-++.+|
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd---------gk~La---VsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD---------GKLLA---VSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC---------CcEEE---EEeccCeEEEEEecceeeeeeeccc
Confidence 98522110000 01112222233334468889998 88888 7888999999999999999999999
Q ss_pred ccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE
Q 013086 363 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 363 ~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
. -++.++ ..+||+++++||| |.+|+||-++-|.+-..+.+|.+-
T Consensus 550 k-LPV~sm-DIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS 594 (888)
T KOG0306|consen 550 K-LPVLSM-DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS 594 (888)
T ss_pred c-cceeEE-eccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence 8 788888 9999999999999 999999999999999999887663
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.9e-28 Score=191.66 Aligned_cols=255 Identities=15% Similarity=0.231 Sum_probs=193.0
Q ss_pred ccceee-eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 64 VNCAVI-RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 64 ~~~~~~-~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.|..+| .+|+..|.+++|+|.| ++|++|+.|.++.||.-..+ ++...+ .||...|.+++|+++ +.+||+++.|.
T Consensus 51 ~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~s-G~~LATCSRDK 127 (312)
T KOG0645|consen 51 TCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSAS-GNYLATCSRDK 127 (312)
T ss_pred EEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCC-CCEEEEeeCCC
Confidence 344455 4799999999999999 69999999999999987643 344555 799999999999999 99999999999
Q ss_pred eEEEEeCCCCc---eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 141 TVSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 141 ~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
+|-||.+..+. +...++.|.+. |..+.|+|...+|++++.|.+|++|+-.....-.....+..+...|
T Consensus 128 SVWiWe~deddEfec~aVL~~HtqD---------VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 128 SVWIWEIDEDDEFECIAVLQEHTQD---------VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV 198 (312)
T ss_pred eEEEEEecCCCcEEEEeeecccccc---------ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence 99999998553 34444444333 8899999999999999999999999887432222233455666689
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
.+++|++ .+..|++++.|++++||-..+. +. ..|...+..+.|. ...|++++.|+.|++|.-... ...+.
T Consensus 199 W~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-~d~p~ 268 (312)
T KOG0645|consen 199 WSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-PDEPS 268 (312)
T ss_pred EEEEecC-CCceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCC-CCCch
Confidence 9999999 9999999999999999986521 11 2378899999997 558999999999999987632 22222
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
-.++.............+.|+|.. ...++ +|+.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~--------~~~L~---s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKV--------SNRLA---SGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCC--------CCcee---ecCCCceEEEEEec
Confidence 222222222222234478999953 22333 68999999999864
No 67
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=219.36 Aligned_cols=263 Identities=17% Similarity=0.238 Sum_probs=215.4
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
..++..|.++.|+|. ...++++-.+|.|.||+.++...++.+.....+ |.+..|-+..+++++|+.|..|
T Consensus 10 ~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred hccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceE
Confidence 348899999999999 999999999999999999999999988876654 8889999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcC-CC
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SG 271 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~ 271 (449)
++|+..+...+. .++.|...|.+++.+| ...++++++.|-.|++||....-. ..+.+ +|...|++++|+| |.
T Consensus 80 rVfnynt~ekV~---~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa--~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 80 RVFNYNTGEKVK---TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWA--CEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EEEecccceeeE---EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCcee--eeeEEcCcceEEEEEEecCCCc
Confidence 999999987653 5677777999999999 888999999999999999875322 22333 8999999999999 78
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
+.+++++.|++|+||.+-..... .++.+|... -++.|-+.+. ..|+. +|+.|.+|+|||.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~n---------fTl~gHekGVN~Vdyy~~gd-------kpylI---sgaDD~tiKvWDy 214 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPN---------FTLEGHEKGVNCVDYYTGGD-------KPYLI---SGADDLTIKVWDY 214 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCc---------eeeeccccCcceEEeccCCC-------cceEE---ecCCCceEEEeec
Confidence 89999999999999999644331 122222222 2555655422 23555 7999999999999
Q ss_pred CCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEec
Q 013086 351 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGK 413 (449)
Q Consensus 351 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~ 413 (449)
.+..+++++.+|. ..+..+ .|+|.-.++++|+ ||++|||+..|-++...+.-...-+.|-+
T Consensus 215 Qtk~CV~TLeGHt-~Nvs~v-~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 215 QTKSCVQTLEGHT-NNVSFV-FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred chHHHHHHhhccc-ccceEE-EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 9999999999998 667777 8999999999999 99999999998887777665555555533
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=206.65 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=223.9
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
..|+++...+.. ..++||+.|..+.++|...++.+..+ .||...|+.+.|+|+ ...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCc
Confidence 478899998874 46899999999999999999888888 899999999999999 899999999999999998877665
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
.....+..+ |+.+..+|.|.||++++.|++..+.|++++....... ....+-.+++++|+| ++.+|.+|
T Consensus 297 ~~~~~h~~~---------V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs-~~~s~v~~ts~~fHp-DgLifgtg 365 (506)
T KOG0289|consen 297 TSSRPHEEP---------VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS-DETSDVEYTSAAFHP-DGLIFGTG 365 (506)
T ss_pred ccccccccc---------ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-eccccceeEEeeEcC-CceEEecc
Confidence 555555443 9999999999999999999999999999988664321 112334699999999 99999999
Q ss_pred eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccce
Q 013086 234 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 313 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (449)
..||.|+|||+..... .-...+|.++|..++|+.+|-+|++++.|+.|++||++.-+..... .........
T Consensus 366 t~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~-------~l~~~~~v~ 436 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI-------QLDEKKEVN 436 (506)
T ss_pred CCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee-------eccccccce
Confidence 9999999999987654 3333479999999999999999999999999999999865532211 111111122
Q ss_pred eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC--CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEE
Q 013086 314 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFI 390 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~i 390 (449)
.+.|++. |.|+. .++.+=+|++++-. ....+..+..|. +..+.+ .|....+++++++ |..+++
T Consensus 437 s~~fD~S---------Gt~L~---~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v-~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 437 SLSFDQS---------GTYLG---IAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGV-RFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eEEEcCC---------CCeEE---eecceeEEEEEecccccceeeehhhhcc-ccccee-eecccceEEeeccchhheEE
Confidence 5666666 88877 45555556665533 455666666655 556666 8999999999999 998888
Q ss_pred EcC
Q 013086 391 WRP 393 (449)
Q Consensus 391 w~~ 393 (449)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 754
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=209.00 Aligned_cols=283 Identities=18% Similarity=0.244 Sum_probs=221.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
.+.|.+++|+|..+.-+|+.+. -.+.||+..+......+ ......|.++.|-.| |.+|++|...|.|++||+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHH
Confidence 4579999999977655666553 47999999887766655 347788999999999 99999999999999999777666
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
++.+..+..+ +....|+|+++ .+++|+.|+.+++||+.+... ......|...|.+.+|+|.++.+++
T Consensus 103 LR~~~ah~ap---------v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 103 LRQLYAHQAP---------VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred HHHHhhccCc---------eeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEEE
Confidence 6666655543 88999999765 566678888999999998763 2345566669999999997788999
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (449)
+|+.||.|++||++... ..+..+.|..+|.++.+-|.|..+++++. ..++|||+.+|..... .-.+.+.+
T Consensus 171 tGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~-------~~~~H~Kt 240 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT-------SMFNHNKT 240 (487)
T ss_pred ecCCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh-------hhhcccce
Confidence 99999999999999754 45556789999999999999999999875 4899999987654211 11112222
Q ss_pred ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEE
Q 013086 312 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFI 390 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~i 390 (449)
..++.+..+ +..+. +|+-|+.+++||+.+.+.+..+.-. +++.++ +.+|+++.++.|. +|.+.+
T Consensus 241 VTcL~l~s~---------~~rLl---S~sLD~~VKVfd~t~~Kvv~s~~~~--~pvLsi-avs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 241 VTCLRLASD---------STRLL---SGSLDRHVKVFDTTNYKVVHSWKYP--GPVLSI-AVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEEEeecC---------CceEe---ecccccceEEEEccceEEEEeeecc--cceeeE-EecCCCceEEEecccceeee
Confidence 234555444 34444 7999999999999999999988766 577888 8999999999998 999877
Q ss_pred EcCCC
Q 013086 391 WRPKE 395 (449)
Q Consensus 391 w~~~~ 395 (449)
=+...
T Consensus 306 rr~~~ 310 (487)
T KOG0310|consen 306 RRREV 310 (487)
T ss_pred ehhhc
Confidence 74433
No 70
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=4.1e-28 Score=194.38 Aligned_cols=296 Identities=19% Similarity=0.307 Sum_probs=221.5
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee----------e----EEEecccCCceeEEEEeeCCCCe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----------K----IVYGNIHSCIVNNIRFNPTNDGT 132 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~----------~----~~~~~~h~~~v~~~~~~~~~~~~ 132 (449)
...+.|.+.|+++...+...+++++|+.||.|.|||+++... + .....+|.-.|..+.|-|-+...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 345679999999999987668999999999999999976431 0 11125688899999999987888
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC---CEEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 133 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK---GVVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 133 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
|.+++.|.++++||..+.+....+..+.. |++-+++|-. -++|+|..+-.|++.|+.++.... .
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~----------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~ 183 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGK----------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---T 183 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCce----------eehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---e
Confidence 99999999999999999888877776544 7777888743 478888999999999999987653 2
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC------------CCCcee-ecCCCCcEEEEEEcCCCCEEEE
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE------------AGSSLC-DLPHKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~ 276 (449)
...|...|.++.|+|...-.|++|+.||.|++||++... ..+.++ ...|.+.|+.++|+.++.++++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 334445899999999777789999999999999998531 112222 2368899999999999999999
Q ss_pred eeCCCcEEEEeCCCCCCCC-CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 277 TSQDNRLRIWDSIFGNLDS-PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
++.|..+++|+...|+-.. +...+.+.. ..+ +.+.-... ..+.++. --.++.+.++.+-.|..
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~~~~n~--~~~---~~~~~~~~-------~s~vfv~----~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGPIIHNQ--TTS---FAVHIQSM-------DSDVFVL----FPNDGSLALLNLLEGSF 327 (397)
T ss_pred ccCccceEEeecccCcccccccccccccc--ccc---ceEEEeec-------ccceEEE----EecCCeEEEEEccCceE
Confidence 9999999999999886422 111111110 000 11110000 0012221 12337799999999999
Q ss_pred EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 356 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 356 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
+..+..|- ..+.+. ++.|+-+.+.+|+ |++|..|-+
T Consensus 328 ir~l~~h~-k~i~c~-~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 VRRLSTHL-KRINCA-AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeeeccc-ceeeEE-eecCchhhhhccccCCccccccc
Confidence 99998884 666655 7999999999999 999999986
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.5e-27 Score=210.56 Aligned_cols=260 Identities=21% Similarity=0.317 Sum_probs=205.1
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|..+|++++|+|+ +++|++++.||.+++|++.+++....+..+.. .+..+.|+++++.+++++.+|.|
T Consensus 6 ~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTG---------PVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc---------ceeEEEECCCCCEEEEEcCCCeE
Confidence 479999999999999 89999999999999999998876665554333 27899999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
++||+...+... ....+...+.++.|++ ++.++++++.++.|.+||+++.+....+ ..|...|.++.|+|++.+
T Consensus 76 ~i~~~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 76 RLWDLETGECVR---TLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTL--RGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred EEEEcCcccceE---EEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEe--ccCCCcEEEEEEcCcCCE
Confidence 999999865433 2334445799999999 7888888888999999999854432222 258889999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
+++++.|+.|++||+++++...... ........+.|+|+ +..++ .++.++.|++||+.++
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~---------~~~l~---~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLT--------GHTGEVNSVAFSPD---------GEKLL---SSSSDGTIKLWDLSTG 209 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEe--------cCccccceEEECCC---------cCEEE---EecCCCcEEEEECCCC
Confidence 9988889999999998766533211 01112346788887 44444 3556999999999999
Q ss_pred eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 354 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 354 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+.+..+..+. ..+..+ .|+|++.++++++ ||.|++|++.+++.+..+..+...+.+
T Consensus 210 ~~~~~~~~~~-~~i~~~-~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 210 KCLGTLRGHE-NGVNSV-AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred ceecchhhcC-CceEEE-EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE
Confidence 8888886655 577777 8999999999999 999999999988877777766544433
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.4e-27 Score=235.84 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=192.7
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
+...|.+++|++....+|++++.||.|+|||+.++.....+ .+|...|++++|+|.++.+|++|+.||+|++||+.++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34679999999864478999999999999999988777766 68999999999997438899999999999999999988
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEe-cCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
.+..+..+. .+.++.|+ +++.++++|+.||.|++||++....... ....+...|.++.|. ++.+|
T Consensus 610 ~~~~~~~~~----------~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~--~~~~h~~~V~~v~f~--~~~~l 675 (793)
T PLN00181 610 SIGTIKTKA----------NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC--TMIGHSKTVSYVRFV--DSSTL 675 (793)
T ss_pred EEEEEecCC----------CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce--EecCCCCCEEEEEEe--CCCEE
Confidence 877665321 28899995 5789999999999999999987653222 334555689999996 57789
Q ss_pred EEEeCCCeEEEEEccCCCC---CCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc----ccee
Q 013086 231 LSCGNDHFARIWDIRRLEA---GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR----EIVH 302 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~ 302 (449)
++++.|+.|++||++.... ...+..+ +|...+.++.|+|++.+|++|+.|+.|++|+........... ....
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 9999999999999975321 1223333 788899999999999999999999999999986543211000 0000
Q ss_pred cCCCCc-cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 303 SHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 303 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
...... ......++|+|+ +.+++ +|+.+|.|+||++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~---------~~~lv---a~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQ---------SSTLV---AANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCC---------CCeEE---EecCCCcEEEEec
Confidence 000111 112347889987 66666 6889999999996
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.2e-28 Score=194.10 Aligned_cols=247 Identities=14% Similarity=0.221 Sum_probs=189.9
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCC--eEEEEeCCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG--TVYAASSDG 140 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg 140 (449)
...+..+..|.++|++++.+ + .++|+|+.|-+|+|||+.+......+ ..|.+.|+++.|.+. .. .|++|+.||
T Consensus 33 l~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~-~S~shLlS~sdDG 107 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPP-LSKSHLLSGSDDG 107 (362)
T ss_pred eeccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCC-cchhheeeecCCC
Confidence 33456788999999999996 5 68999999999999999998888877 469999999999986 43 899999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
.|.+|+...-.++..+..+... |+.++++|.+++.++.+.|+.+++||+-.++..... .. .+ ....+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~---------Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L-~~--~at~v 174 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQ---------VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-NL-KN--KATLV 174 (362)
T ss_pred cEEEEEcCCeEEeeeecccccc---------cceeEecCCCceEEEEcCCceeeeehhhcCccceee-cc-CC--cceee
Confidence 9999999998888888766543 999999999999999999999999999888765322 11 11 35559
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccc
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 300 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (449)
.|+| .+.+++.++.+ .|-+|.+.+.. .+........+.++.|. ++..|++|+.|+.|.+||....
T Consensus 175 ~w~~-~Gd~F~v~~~~-~i~i~q~d~A~---v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~--------- 239 (362)
T KOG0294|consen 175 SWSP-QGDHFVVSGRN-KIDIYQLDNAS---VFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD--------- 239 (362)
T ss_pred EEcC-CCCEEEEEecc-EEEEEecccHh---Hhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC---------
Confidence 9999 88888877754 58899886533 33333344557777776 5678888888888888886532
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceee-ecCCCCcE
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN-KLHPRDDV 379 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~-~~~~~~~~ 379 (449)
.+...+..|. ..|..+. .-.|++.+
T Consensus 240 -----------------------------------------------------~~~~~~~AH~-~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 240 -----------------------------------------------------TPLTEFLAHE-NRVKDIASYTNPEHEY 265 (362)
T ss_pred -----------------------------------------------------ccceeeecch-hheeeeEEEecCCceE
Confidence 2222333333 3444442 13567889
Q ss_pred EeecC-CCeEEEEcCCCc
Q 013086 380 LASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 380 l~s~s-dg~i~iw~~~~~ 396 (449)
|+|++ ||.|+|||++..
T Consensus 266 lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCceEEEEEcccc
Confidence 99988 999999999876
No 74
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5e-27 Score=216.98 Aligned_cols=216 Identities=17% Similarity=0.219 Sum_probs=160.2
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-------eEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
...+..+.+|.+.|.+++|+|+.+.+|++|+.|+.|+|||+.+... ......+|...|.+++|+|++..+|++
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 3456789999999999999997447899999999999999975421 112236799999999999983345679
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
++.|++|++||+++++....+..+ ..|.+++|+++|.+|++++.|+.|++||++++..... ...|.+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~----------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t---l~gH~g 210 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS---FHIHDG 210 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE---EecccC
Confidence 999999999999998876555321 1399999999999999999999999999999775532 233333
Q ss_pred ceEE-----EEEcCCCCCEEEEEeCCC----eEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 216 KVVG-----LHCNPIQPELLLSCGNDH----FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 216 ~v~~-----~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
.+.. ..|++ ++.+|++++.++ .|+|||+++.......... .+.+.+......+++.++++|+.|+.|++
T Consensus 211 ~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 211 GKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 3322 23457 778888877664 7999999864332211111 22333333334456889999999999999
Q ss_pred EeCCCCC
Q 013086 286 WDSIFGN 292 (449)
Q Consensus 286 wd~~~~~ 292 (449)
|++..+.
T Consensus 290 ~e~~~~~ 296 (568)
T PTZ00420 290 YQHSLGS 296 (568)
T ss_pred EEccCCc
Confidence 9997664
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-27 Score=190.91 Aligned_cols=266 Identities=16% Similarity=0.202 Sum_probs=206.2
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCe
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGF 192 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~ 192 (449)
.....|+++.|+++ +.++++++.|.+|++||..+++....+....-+ +..+.|....+.++.++. |..
T Consensus 12 ~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG---------~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 12 ETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG---------VDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeeccccc---------ccEEEEecCCceEEEccCCCCCc
Confidence 35778999999999 999999999999999999999999988765443 778888888887777776 789
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
|+..++.+++.+. -..+|...|++++.+| -++.+++++.|++|++||++..+....+. ...-..++|+|+|-
T Consensus 82 IryLsl~dNkylR---YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 82 IRYLSLHDNKYLR---YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LSGRPIAAFDPEGL 153 (311)
T ss_pred eEEEEeecCceEE---EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe----cCCCcceeECCCCc
Confidence 9999999987653 3455566899999999 77999999999999999999655543332 22334589999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
++|++...+.|++||++.-.. .|....... ......-..+.|+|+ |+++. .++..+.+++.|.-+
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~--~~~~~ew~~l~FS~d---------GK~iL---lsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDK-GPFTTFSIT--DNDEAEWTDLEFSPD---------GKSIL---LSTNASFIYLLDAFD 218 (311)
T ss_pred EEEEecCCCeEEEEEecccCC-CCceeEccC--CCCccceeeeEEcCC---------CCEEE---EEeCCCcEEEEEccC
Confidence 999999888999999986532 122211111 111122236789998 77777 567788899999999
Q ss_pred ceEEEEEecCccce-eceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc-ceEEEEec
Q 013086 353 GQLVAEVMDPNITT-ISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE-MKIIVCGK 413 (449)
Q Consensus 353 ~~~~~~~~~~~~~~-v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~-~~~~~c~~ 413 (449)
|..+.++..+.... +..-+.|+||++++++|+ ||+|.+|++++|..+..+.+. .....|-.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 99999998775444 222226999999999999 899999999999999888884 55555544
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=203.31 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=212.5
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce---eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 189 (449)
...|...|.-+.|+++ |++||+++.|.+..+|++..... ..++..+.. .|..+.|+||.+++++++.
T Consensus 220 l~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~---------~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ---------PVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred HhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccC---------ceEEEEECCCCCeEEecCc
Confidence 3679999999999999 99999999999999999865544 334433333 3999999999999999999
Q ss_pred CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC
Q 013086 190 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 269 (449)
Q Consensus 190 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (449)
+..+.+||..++......... ++..+.+.+|.| ++..+++|+.|+.+..||+...... .... .....|.+++.++
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-~W~g-vr~~~v~dlait~ 364 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-NWEG-VRDPKVHDLAITY 364 (519)
T ss_pred hHheeeccCCcchhhhhcccC--cCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-cccc-cccceeEEEEEcC
Confidence 999999999998876443222 455899999999 9999999999999999999743221 1111 1335699999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
||+++++.+.|..|++|+..+..... -...+....+...+.+ |+++. ..-.+..|++||
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~---------lise~~~its~~iS~d---------~k~~L---vnL~~qei~LWD 423 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRG---------LISEEQPITSFSISKD---------GKLAL---VNLQDQEIHLWD 423 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhc---------cccccCceeEEEEcCC---------CcEEE---EEcccCeeEEee
Confidence 99999999999999999987654321 0111111123333443 66665 456788999999
Q ss_pred CCCceEEEEEecCccceeceeeecCC-CCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecCCceeeeecCCCCC
Q 013086 350 ITTGQLVAEVMDPNITTISPVNKLHP-RDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESE 427 (449)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d 427 (449)
++..+.+..+.+|..+...--.+|.- +..++++|| |+.|+||+..+|+++.++.+|...+.|-.........|..-+|
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 99999999999886443321114654 458999999 9999999999999999999999999987665555455544444
Q ss_pred C
Q 013086 428 D 428 (449)
Q Consensus 428 ~ 428 (449)
|
T Consensus 504 D 504 (519)
T KOG0293|consen 504 D 504 (519)
T ss_pred C
Confidence 4
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.1e-27 Score=203.13 Aligned_cols=278 Identities=20% Similarity=0.258 Sum_probs=201.3
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE---------EEecccCCceeEEEEeeCCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---------VYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
...+...--|.+.|+.+.+-|..+.++|+++..+.|.|||..+..... ..+.+|...-.++.|++.....|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 444555566999999999999999999999999999999987532211 13368988889999999878899
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeec
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHR 212 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 212 (449)
++++.|++|++||+...............+.+ +...|..++|++- ..++++++.|+.+.|||+|++ ..........
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~--h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~a 270 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSG--HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKA 270 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeec--CCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccc
Confidence 99999999999999765432111000011111 1224889999995 568888999999999999974 2222234556
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
|.+.+.|++|+|.++.+||+|+.|++|.+||+|+... ......+|...|.+|.|+| ....|++++.|+.+.|||+..-
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 6779999999999999999999999999999998766 2333348999999999999 5678899999999999999532
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceee
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 371 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 371 (449)
...++ +. -..|+ ..+++..- ++|...|..+
T Consensus 350 g~eq~----------------------~e------------------da~dg--------ppEllF~H-gGH~~kV~Df- 379 (422)
T KOG0264|consen 350 GEEQS----------------------PE------------------DAEDG--------PPELLFIH-GGHTAKVSDF- 379 (422)
T ss_pred ccccC----------------------hh------------------hhccC--------CcceeEEe-cCcccccccc-
Confidence 21100 00 01111 11223333 3344667777
Q ss_pred ecCCCCcEE-eecC-CCeEEEEcCC
Q 013086 372 KLHPRDDVL-ASGS-SRSIFIWRPK 394 (449)
Q Consensus 372 ~~~~~~~~l-~s~s-dg~i~iw~~~ 394 (449)
.|+|+...+ ++.+ |+.+.||...
T Consensus 380 sWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCCCCCeEEEEecCCceEEEeecc
Confidence 899988755 4566 8999999875
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=190.35 Aligned_cols=279 Identities=12% Similarity=0.137 Sum_probs=207.0
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
-.+.|.+|+|||....+++.|+.|++||+|+++. +.........|.++|.+++|+.+ +..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEEEccCC
Confidence 3678999999996556788999999999999987 34444444679999999999999 899999999999999999999
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCC--EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+.. .+..|..+ |..+.|-+... .|++|+.|.+|++||++...++..+ .+ ..+++++..- ..
T Consensus 105 Q~~-~v~~Hd~p---------vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~L---PeRvYa~Dv~---~p 167 (347)
T KOG0647|consen 105 QVS-QVAAHDAP---------VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QL---PERVYAADVL---YP 167 (347)
T ss_pred Cee-eeeecccc---------eeEEEEecCCCcceeEecccccceeecccCCCCeeeee-ec---cceeeehhcc---Cc
Confidence 654 44444443 88899988665 8999999999999999987665332 22 2357777764 37
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC---
Q 013086 229 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD--- 305 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--- 305 (449)
+++++..+..|.+|++++.............-.+.||+..++....+.|+.+|.+.+..+..+.... .-....|.
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~--nFtFkCHR~~~ 245 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD--NFTFKCHRSTN 245 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC--ceeEEEeccCC
Confidence 8888899999999999765443322222455678999999988888999999999999998764311 11111111
Q ss_pred -CCc-cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 306 -FNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 306 -~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
... .-..-.++|+|.. |.+. +.+.||++.+||-.....+.+...+. ..|.+. +|+.+|.++|.+
T Consensus 246 ~~~~~VYaVNsi~FhP~h--------gtlv----TaGsDGtf~FWDkdar~kLk~s~~~~-qpItcc-~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVH--------GTLV----TAGSDGTFSFWDKDARTKLKTSETHP-QPITCC-SFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeeccc--------ceEE----EecCCceEEEecchhhhhhhccCcCC-Ccccee-EecCCCCEEEEE
Confidence 111 1111257788852 3222 47789999999988777777766665 677777 899999999875
Q ss_pred C
Q 013086 384 S 384 (449)
Q Consensus 384 s 384 (449)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 4
No 79
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.4e-26 Score=214.12 Aligned_cols=251 Identities=17% Similarity=0.213 Sum_probs=175.8
Q ss_pred EEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce-e-------eeeecCCCC
Q 013086 91 SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-L-------SLMNVNPNG 162 (449)
Q Consensus 91 t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~-------~~~~~~~~~ 162 (449)
.|+.++.|++|+.........+ .+|...|.+++|+|+.+.+|++|+.|++|++||+.++.. . ..+..+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--- 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--- 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC---
Confidence 3566889999998776655555 789999999999997578999999999999999986432 1 122211
Q ss_pred CCCCCcccceeEEEEecCCCE-EEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 163 WHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
...|.+++|+|++.. +++++.|+.|++||++++..... .. +...|.+++|+| ++.+|++++.|+.|+|
T Consensus 125 ------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~---i~-~~~~V~Slswsp-dG~lLat~s~D~~IrI 193 (568)
T PTZ00420 125 ------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ---IN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHI 193 (568)
T ss_pred ------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE---Ee-cCCcEEEEEECC-CCCEEEEEecCCEEEE
Confidence 234999999999875 46889999999999998764422 21 334799999999 9999999999999999
Q ss_pred EEccCCCCCCceeecCCCCcEEE-----EEEcCCCCEEEEeeCCC----cEEEEeCCCCCCCCCCccceecCCCCccccc
Q 013086 242 WDIRRLEAGSSLCDLPHKRVVNS-----AYFSPSGSKILTTSQDN----RLRIWDSIFGNLDSPSREIVHSHDFNRHLTP 312 (449)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (449)
||++++.....+ .+|.+.+.+ ..|++++.+|++++.|+ .|+|||++.... + +...........
T Consensus 194 wD~Rsg~~i~tl--~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--p----l~~~~ld~~~~~ 265 (568)
T PTZ00420 194 IDPRKQEIASSF--HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--A----LVTMSIDNASAP 265 (568)
T ss_pred EECCCCcEEEEE--ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC--c----eEEEEecCCccc
Confidence 999975543222 357665433 34568889999988774 799999985221 1 111122222222
Q ss_pred eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe-cCccceeceeeecCCCC
Q 013086 313 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRD 377 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~~~~~~ 377 (449)
+...|.++. |.+++ +|..|+.|++|++..+.. ..+. ..+..+..++ +|.|+.
T Consensus 266 L~p~~D~~t--------g~l~l---sGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~-~f~Pkr 318 (568)
T PTZ00420 266 LIPHYDEST--------GLIYL---IGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSF-GFLPKQ 318 (568)
T ss_pred eEEeeeCCC--------CCEEE---EEECCCeEEEEEccCCcE-EeecccccCCCccce-EEcccc
Confidence 334454442 55554 688999999999987753 3332 2233445566 788864
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.9e-27 Score=188.65 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=209.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
++.|+++.|+|.++ .|+.++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC--CceEEEeccCceEEEEEecCCcc
Confidence 57899999998885 56667799999999999887666664 999999999997 56899999999999999998876
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
...-.. . ..+.++.+++....+++|+.|+.|++||.+...... .......|.++.. .++.|++
T Consensus 88 ~~igth-~---------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~----~~d~~kkVy~~~v---~g~~LvV 150 (323)
T KOG1036|consen 88 DQIGTH-D---------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG----TFDQGKKVYCMDV---SGNRLVV 150 (323)
T ss_pred eeeccC-C---------CceEEEEeeccCCeEEEcccCccEEEEecccccccc----ccccCceEEEEec---cCCEEEE
Confidence 543322 2 239999999999999999999999999999744332 2233337888887 4588999
Q ss_pred EeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc---
Q 013086 233 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH--- 309 (449)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--- 309 (449)
|+.+..+.+||+++.............-.+.++++-|++.-+++++-||.|.+=.++.....+..+-....|.....
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 99999999999998776554444456678999999998888999999999998766655322211111111111110
Q ss_pred --ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 310 --LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 310 --~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
...-.++|+|- -..++ +|+.||.|.+||+.+.+.+..+..-. ..|..+ +|+.+|..||+|+
T Consensus 231 ~~yPVNai~Fhp~---------~~tfa---TgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~sl-sfs~dG~~LAia~ 293 (323)
T KOG1036|consen 231 IIYPVNAIAFHPI---------HGTFA---TGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSL-SFSMDGSLLAIAS 293 (323)
T ss_pred EEEEeceeEeccc---------cceEE---ecCCCceEEEccCcchhhhhhccCCC-CceEEE-EeccCCCeEEEEe
Confidence 11124667765 33344 79999999999999999888886653 667777 9999999999987
No 81
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=213.81 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=186.1
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE------------EEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI------------VYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
-..|.....++++. .+++++.+.....|+...+..+. ....+|.+.|++++|+|.++++|++|+.|+
T Consensus 20 ~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34566666666753 36677777777777754432211 123689999999999993288999999999
Q ss_pred eEEEEeCCCCce-------eeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeec
Q 013086 141 TVSCTDLETGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHR 212 (449)
Q Consensus 141 ~v~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 212 (449)
+|++||+.++.. +..+..+ ...|.+++|+|++ ++|++++.|+.|++||+.++.... ....
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH---------~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---~l~~ 166 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGH---------TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---VIKC 166 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCC---------CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---EEcC
Confidence 999999976532 2233222 2349999999985 699999999999999999876432 3344
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCc-EEEEEEcCCCCEEEEee----CCCcEEEEe
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRV-VNSAYFSPSGSKILTTS----QDNRLRIWD 287 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~vwd 287 (449)
+...|.+++|+| ++.+|++++.|+.|++||+++++....+ .+|.+. +..+.|.+++..|++++ .|+.|++||
T Consensus 167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl--~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV--EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE--ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 556899999999 9999999999999999999875542222 246543 45678999888877654 478999999
Q ss_pred CCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcccee
Q 013086 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 367 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 367 (449)
++.... +. ...............|+++ +.++.. .|..|+.|++||+.+++.+...........
T Consensus 244 lr~~~~--p~----~~~~~d~~~~~~~~~~d~d---------~~~L~l--ggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 244 TRKMAS--PY----STVDLDQSSALFIPFFDED---------TNLLYI--GSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred CCCCCC--ce----eEeccCCCCceEEEEEcCC---------CCEEEE--EEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 976442 11 1111111112234557776 444331 234699999999999998777655444455
Q ss_pred ceeeecCCC
Q 013086 368 SPVNKLHPR 376 (449)
Q Consensus 368 ~~v~~~~~~ 376 (449)
..+ +|.|.
T Consensus 307 ~g~-~~~pk 314 (493)
T PTZ00421 307 KGL-CMMPK 314 (493)
T ss_pred cce-Eeccc
Confidence 555 66664
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-28 Score=190.44 Aligned_cols=212 Identities=19% Similarity=0.296 Sum_probs=179.8
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...++.++.|..+|.++.|++..++.+++++.|++|++|+......+.++ .+|...|...+|+|...+++++++.|+++
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 34678999999999999999987778899999999999999988888887 79999999999999889999999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
++||++.......+..+.. .+.++.|+. +.+.+++|+.|+.|+.||++..+.+. .....|+-.|..++
T Consensus 173 ~lwdvr~~gk~~~i~ah~~---------Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl--~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAHNS---------EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL--FELNGHGLAVRKVK 241 (311)
T ss_pred EEEEecCCCceeEEEeccc---------eeEeecccccCCcEEEecCCCceEEEEehhhccccc--eeecCCceEEEEEe
Confidence 9999986544444555442 399999988 45688899999999999999987653 34466666899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 288 (449)
|+|....+|++++.|-+++|||...... .+... .|..-+..+.|++ ++.++|+++.|+.++||+.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9998889999999999999999874333 22222 5888899999999 7889999999999999984
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=217.18 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=180.3
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...+..|.||.+.|..|.|+.++ +|++++.|.+|++|++....++..+. |..-|+|++|+|.+.++|++|+-||.|
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred ccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccce
Confidence 44567899999999999999986 79999999999999999999999996 999999999999989999999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec-----CCCce
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR-----KGSKV 217 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v 217 (449)
+||++...+...-..++. .|++++|.|+|+..++|+.+|.+++|+....+.......... ....|
T Consensus 435 RiWsI~d~~Vv~W~Dl~~----------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRD----------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred EEeecCcCeeEeehhhhh----------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence 999999887766554442 399999999999999999999999999988765533211111 12379
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+.+.|.|.+...+++.+.|..|+|||.+.......+.-+.....-....|+.||++|++++.|..|++|++...
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99999997777788889999999999977666555554434444566789999999999999999999998543
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.3e-28 Score=191.23 Aligned_cols=251 Identities=16% Similarity=0.159 Sum_probs=205.0
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
-+-+|.||.++|++..++.+- ...|+++.|-+.+|||.-++..+..+. |...|.+++|+.+ .++|++|+.+..++|
T Consensus 51 wigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~d-s~~lltgg~ekllrv 126 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQD-SNYLLTGGQEKLLRV 126 (334)
T ss_pred cEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEeccc-chhhhccchHHHhhh
Confidence 357899999999999999887 568999999999999999999988886 9999999999999 999999999999999
Q ss_pred EeCCCCce-eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 145 TDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 145 wd~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
||++..+. ...+..+.. .|..+.|....+.|++++.|+.|++||.+++.....+ ....+|+++.++
T Consensus 127 fdln~p~App~E~~ghtg---------~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL----~~~s~VtSlEvs 193 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTG---------GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL----EFNSPVTSLEVS 193 (334)
T ss_pred hhccCCCCCchhhcCCCC---------cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE----ecCCCCcceeec
Confidence 99986542 233333332 3899999999999999999999999999999876433 233379999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
+ ++.+|.++ ..+.|.+||..+... +........|.+..++|+...+++|+.|..++.||..+|+-+..
T Consensus 194 ~-dG~ilTia-~gssV~Fwdaksf~~---lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~------- 261 (334)
T KOG0278|consen 194 Q-DGRILTIA-YGSSVKFWDAKSFGL---LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS------- 261 (334)
T ss_pred c-CCCEEEEe-cCceeEEeccccccc---eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-------
Confidence 9 88877665 467899999987444 44445677899999999999999999999999999999986432
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
..-..+....++.|+|+ |...+ +|+.||+|++|.+..++..
T Consensus 262 ~nkgh~gpVhcVrFSPd---------GE~yA---sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 262 YNKGHFGPVHCVRFSPD---------GELYA---SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cccCCCCceEEEEECCC---------Cceee---ccCCCceEEEEEecCCCch
Confidence 11222233358999999 77777 8999999999998766543
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4e-27 Score=219.96 Aligned_cols=303 Identities=15% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccCccEEEEEEeCCCCcEEEEEc--CCCcEEEEeCcCC------------eeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKV------------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~--~d~~i~vwd~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
.+...|.++..+|+| ..+|||+ .|+.++||+.+.- ..+... ..|.+.|+|+.|+|+ +.+||+|
T Consensus 11 H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d-G~~lAsG 87 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD-GSYLASG 87 (942)
T ss_pred cCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC-CCeEeec
Confidence 345679999999999 6799999 8999999987431 122222 569999999999999 9999999
Q ss_pred eCCCeEEEEeCCCC------------------ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC
Q 013086 137 SSDGTVSCTDLETG------------------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 198 (449)
Q Consensus 137 ~~dg~v~iwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 198 (449)
+.|+.|.+|..... +....+..|. ..|..++|+|++.++++++.|+.|.+|+.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---------~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---------SDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---------CccceeccCCCccEEEEecccceEEEEcc
Confidence 99999999997731 1223333332 23999999999999999999999999999
Q ss_pred CCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee----cCCCCcEEEEEEcCCCCEE
Q 013086 199 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l 274 (449)
++..... ....|.+.|-.+.|.| -+++|++-+.|++|++|.+..-...+.+.. .........+.|||||++|
T Consensus 159 ~tF~~~~---vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 159 KTFELLK---VLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccceeee---eeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 9984432 4455666899999999 999999999999999999765333222221 1234567899999999999
Q ss_pred EEeeC----CCcEEEEeCCCCCCCCCCccceecCCCCccccc-eeeeeccCCCCCceE----EEc-ceecccCCCCCCcc
Q 013086 275 LTTSQ----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLA----VIG-RYISENYNGAALHP 344 (449)
Q Consensus 275 ~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~d~~ 344 (449)
++... -.++.|.+-.+.+. ...+-+|..+ ..+.|+|.-...... ..+ .+.....+|+.|++
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~---------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKV---------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred cchhhccCCcceeEEEecCCcee---------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 98643 33677766554443 1222233333 356777752111110 001 11112227999999
Q ss_pred eEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 345 IDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
|-||.....+++..+..-....|..+ +|+|||..|..+| ||+|.+..++..+.-
T Consensus 306 lSVW~T~~~RPl~vi~~lf~~SI~Dm-sWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 306 LSVWNTALPRPLFVIHNLFNKSIVDM-SWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred EEEEecCCCCchhhhhhhhcCceeee-eEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 99999988888877766556788888 9999999999999 999999999876543
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=201.68 Aligned_cols=262 Identities=18% Similarity=0.209 Sum_probs=194.0
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
...|.+++|+|....-+++.+ .-.+.+|+..+......+.--. ..++++.|..||+++++|+..|.|++|
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---------~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---------DVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---------cceeEEEeecCCeEEEccCCcCcEEEe
Confidence 457999999997444455544 3579999988776655332111 239999999999999999999999999
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEE
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKIL 275 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 275 (449)
|+.+...+ . ....|..++..+.|+|.++..+++|+.|+.+++||+.+... .....+|...|.+.+|+| ++..++
T Consensus 96 D~k~r~iL-R--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 96 DMKSRVIL-R--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred ccccHHHH-H--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEE
Confidence 96553222 2 34455669999999998889999999999999999987542 334448999999999999 566899
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 276 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
+|+.||.|++||+++-.. . ..+.+.+..+ -.+.+-|. |..++ ....+.|+|||+.+|..
T Consensus 171 tGsYDg~vrl~DtR~~~~--~----v~elnhg~pV--e~vl~lps---------gs~ia----sAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTS--R----VVELNHGCPV--ESVLALPS---------GSLIA----SAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred ecCCCceEEEEEeccCCc--e----eEEecCCCce--eeEEEcCC---------CCEEE----EcCCCeEEEEEecCCce
Confidence 999999999999986431 0 1111111111 13444444 45554 23346799999996655
Q ss_pred EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecCC
Q 013086 356 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKAD 415 (449)
Q Consensus 356 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~~ 415 (449)
.-.....|...++++ .+..++..|++|+ |+.+++|++.+-+.+..+.-+++++.|+-.+
T Consensus 230 ll~~~~~H~KtVTcL-~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCL-RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP 289 (487)
T ss_pred ehhhhhcccceEEEE-EeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC
Confidence 444444344899999 8888999999999 9999999999999998888888887765444
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=7.7e-27 Score=193.29 Aligned_cols=207 Identities=23% Similarity=0.290 Sum_probs=174.4
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC------------------------eeeEEEecccCCceeE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV------------------------SEKIVYGNIHSCIVNN 122 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~------------------------~~~~~~~~~h~~~v~~ 122 (449)
+.-+||...|-+++..++| ..+++|+.|.+|.||+..+. ..+.....+|..+|.+
T Consensus 187 ~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~ 265 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS 265 (423)
T ss_pred hHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence 4455999999999999999 67999999999999993210 1122334799999999
Q ss_pred EEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCC
Q 013086 123 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS 202 (449)
Q Consensus 123 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 202 (449)
+.|++ ...+++++.|.+|+.||+.++.....+..... +.+++.+|..++|++|+.|..+++||.+++.
T Consensus 266 V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks----------l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 266 VVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS----------LNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EEEcC--CCceEeecccceEEEEEeecccceeeeecCcc----------eeEeecccccceeeecCCCCceeecCCCCCC
Confidence 99997 67899999999999999999998887765433 9999999999999999999999999999876
Q ss_pred CccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCc
Q 013086 203 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR 282 (449)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 282 (449)
-......+..|...|.++.|+|.+..+|++|+.|+++++||+|+... ......+|...|.++.|+ ++.++++|+.|.+
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEecc-CCceEEeccCcce
Confidence 54444456667779999999998899999999999999999997542 233334899999999998 5678999999999
Q ss_pred EEEEeC
Q 013086 283 LRIWDS 288 (449)
Q Consensus 283 i~vwd~ 288 (449)
|+++.-
T Consensus 412 l~i~~~ 417 (423)
T KOG0313|consen 412 LRIFKG 417 (423)
T ss_pred EEEecc
Confidence 999875
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=212.14 Aligned_cols=265 Identities=18% Similarity=0.232 Sum_probs=205.1
Q ss_pred CCCCcccccee-eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 58 HVIPDQVNCAV-IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 58 ~~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
+..-....+.. +.||.+.|.+++|..-+ .+|++|+.|.+++|||..++.+...+ .+|...|.++...+ ..+++|
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~---~~~~sg 307 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDP---FLLVSG 307 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccC---ceEeec
Confidence 33334555555 99999999999998744 68999999999999999999999998 69999999999874 488889
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCc
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (449)
+.|.+|++|+++++..+..+..+... |.++..+ +.++++|+.|+.|.+||+.+++.+.. ...|..+
T Consensus 308 s~D~tVkVW~v~n~~~l~l~~~h~~~---------V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s---l~gH~~~ 373 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACLNLLRGHTGP---------VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS---LSGHTGR 373 (537)
T ss_pred cCCceEEEEeccCcceEEEecccccc---------EEEEEec--CCEEEEEecCceEEEEEhhhceeeee---ecCCcce
Confidence 99999999999999999988764433 8998887 88999999999999999998877643 3345669
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCC-CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
|.++.+.+ . ..+++|+.|+.|++||+++. +....+ .+|..-+..+.+ .+++|++++.|+.|++||..++++..
T Consensus 374 V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 374 VYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTL--QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred EEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhh--cCCccccccccc--ccceeEeccccccEEEeecccCceee
Confidence 99998865 3 99999999999999999986 332222 257777766655 68899999999999999999988754
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
..... .......+.+. ...++ +++.++.+++||+++++....+..+......
T Consensus 448 ~~~~~-------~~~~v~~l~~~-----------~~~il---~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~ 499 (537)
T KOG0274|consen 448 TLEGR-------HVGGVSALALG-----------KEEIL---CSSDDGSVKLWDLRSGTLIRTLLSTDLGATW 499 (537)
T ss_pred eeccC-------CcccEEEeecC-----------cceEE---EEecCCeeEEEecccCchhhhhhhccccccc
Confidence 33221 00111111111 02222 5788999999999999999887554433334
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=191.58 Aligned_cols=216 Identities=19% Similarity=0.294 Sum_probs=183.7
Q ss_pred CCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 59 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
..|....+.+|.||+..|+.+.|+++. ..+++++.|..|+||........... ..|.++|+.+..+|. +.||++++.
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t-geYllsAs~ 323 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT-GEYLLSASN 323 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC-CcEEEEecC
Confidence 344455678899999999999999998 57899999999999999887766665 679999999999999 999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|++..+.|++++..+......... ..+++.+|+|||..|.+|..||.|++||+.+..... .+..|.++|.
T Consensus 324 d~~w~Fsd~~~g~~lt~vs~~~s~-------v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~Fpght~~vk 393 (506)
T KOG0289|consen 324 DGTWAFSDISSGSQLTVVSDETSD-------VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KFPGHTGPVK 393 (506)
T ss_pred CceEEEEEccCCcEEEEEeecccc-------ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cCCCCCCcee
Confidence 999999999999988776543211 238999999999999999999999999999877443 4556778999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.++|+. +|.+|+++.+|+.|++||+|..+..+.+.. .....+.++.|.+.|.+|+.++.|=.|++++-.
T Consensus 394 ~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 394 AISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred EEEecc-CceEEEEEecCCeEEEEEehhhcccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence 999999 999999999999999999998776555543 334479999999999999999888777776643
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=193.80 Aligned_cols=270 Identities=16% Similarity=0.166 Sum_probs=209.0
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
+....+.|..|+|+ +++|++|+.||.|.+|+..+|+....+...... .---....|.|+.|+.|...+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhc-ceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 45667889999999 999999999999999999999876655432211 0011223499999999999999999999999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
+|.++++.++..+-..|.. .|+++.|+. ++..+++++.|.++++.-+++++..+.+ .+|.+.|+...|.++|.++
T Consensus 289 vWri~tG~ClRrFdrAHtk--Gvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEf--rGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTK--GVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEF--RGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEEEecchHHHHhhhhhcc--CeeEEEEcc-CcchhhcccccceEEEeccccchhHHHh--cCccccccceEEcCCCCeE
Confidence 9999999988766555555 699999999 9999999999999999999876554333 3799999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
++++.||+|++|+..+.++....+.... ......+..-|..+ .++++ ....++|+|.++ .|+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~------d~~vnsv~~~PKnp-------eh~iV----CNrsntv~imn~-qGQ 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGT------DYPVNSVILLPKNP-------EHFIV----CNRSNTVYIMNM-QGQ 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCC------cccceeEEEcCCCC-------ceEEE----EcCCCeEEEEec-cce
Confidence 9999999999999999998665443321 11222444445543 22332 455677888887 588
Q ss_pred EEEEEecCc---cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 355 LVAEVMDPN---ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 355 ~~~~~~~~~---~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
.+.++..+. ..-+.+ ..+|.|.++.+.+ |+.++.+.+.+|+....+..|.+.++.
T Consensus 426 vVrsfsSGkREgGdFi~~--~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG 484 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINA--ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG 484 (508)
T ss_pred EEeeeccCCccCCceEEE--EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence 888886542 123443 5999999999988 999999999999988777777665443
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=179.13 Aligned_cols=253 Identities=15% Similarity=0.244 Sum_probs=199.8
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.+.+|.+.|-.++|+|..+.+|++++.|.+|++||+..+++..... ....=.-+.|+|+ +.++++++.|..|...|.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~-g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPD-GEYIAVGNKDDRITFIDA 135 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCC-CCEEEEecCcccEEEEEe
Confidence 5678999999999999888899999999999999999999888874 4444456889999 999999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
++.+.....+.... +..+.|+.++.+++.....|.|.|......+++. .+..|.....||.|+| ++
T Consensus 136 r~~~~~~~~~~~~e----------~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---si~AH~snCicI~f~p-~G 201 (313)
T KOG1407|consen 136 RTYKIVNEEQFKFE----------VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---SIKAHPSNCICIEFDP-DG 201 (313)
T ss_pred cccceeehhcccce----------eeeeeecCCCCEEEEecCCceEEEEecccccccc---ccccCCcceEEEEECC-CC
Confidence 98887766554332 7889999888888888888999999988766553 3455556899999999 99
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
++||+|+.|..+.+||+...-....+. .+.-+|..+.|+.+|++||++|+|..|-|=++.+|..+ +...
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~---------~eI~ 270 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV---------WEIP 270 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeE---------EEee
Confidence 999999999999999998655544443 47889999999999999999999999999999998763 2222
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.....+.++|+|..+-..++.+.+.-- +.-..|.+++|-+.
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTVKIFGLS 311 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCCCCc---cccccceeEEecCC
Confidence 333346899999965554444322110 12233667766543
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1e-26 Score=197.19 Aligned_cols=233 Identities=18% Similarity=0.289 Sum_probs=180.9
Q ss_pred HhhhhhcCCCCCCCcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee------eEEEec
Q 013086 41 YVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGN 114 (449)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~------~~~~~~ 114 (449)
++|++.-.+..+.... ...| -..|.||+..=++|+|++...-.|++|+.|+.|++||+..... ......
T Consensus 150 ~Vfd~tk~~s~~~~~~-~~~P----dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~ 224 (422)
T KOG0264|consen 150 YVFDYTKHPSKPKASG-ECRP----DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS 224 (422)
T ss_pred EEEEeccCCCcccccc-cCCC----ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence 4666655554443222 2222 2579999998999999998767899999999999999976432 334447
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCC
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFG 191 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 191 (449)
+|...|..++|++....+|++++.|+.+.|||++++ +.......+. ..+.|++|+|- +..||+|+.|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~---------~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS---------AEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC---------CceeEEEeCCCCCceEEeccCCC
Confidence 899999999999988889999999999999999953 3333333322 34999999995 56788899999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC------------ceeecCCC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS------------SLCDLPHK 259 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~ 259 (449)
+|.+||+|+..... .....|...|..+.|+|.....|++++.|+.+.+||+..-...+ .+..-+|.
T Consensus 296 tV~LwDlRnL~~~l--h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 296 TVALWDLRNLNKPL--HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred cEEEeechhcccCc--eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99999999987643 34555666899999999888999999999999999997533322 13333899
Q ss_pred CcEEEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q 013086 260 RVVNSAYFSPSGS-KILTTSQDNRLRIWDSI 289 (449)
Q Consensus 260 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~ 289 (449)
..|..+.|+|+.. .|++.+.|+.+.||.+.
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999665 56778889999999985
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=199.43 Aligned_cols=251 Identities=18% Similarity=0.211 Sum_probs=183.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE-----------ecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-----------GNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
...|.+++|++.|+.+|+ .+....++|+|.......... .+||...+++.+|+|.+...|++++.||+
T Consensus 214 ~h~i~sl~ys~Tg~~iLv-vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILV-VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccccceeeecCCCCeEEE-EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 457999999999965544 444678999998765443321 26899999999999998889999999999
Q ss_pred EEEEeCCCCceeee-eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE--EeecCCCceE
Q 013086 142 VSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI--LIHRKGSKVV 218 (449)
Q Consensus 142 v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~ 218 (449)
+++||+...+.... +..... . .....+..++|++++++||+|+.||.|.+|+........... ..|..+..|+
T Consensus 293 lRiWdv~~~k~q~qVik~k~~--~--g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPA--G--GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT 368 (641)
T ss_pred EEEEecCCchhheeEEeeccC--C--CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence 99999987654333 222111 1 122348899999999999999999999999986654433332 3455555899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce-eecCCCCcEEEEEEcCCCCEEEEeeC------CCcEEEEeCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQ------DNRLRIWDSIFG 291 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~ 291 (449)
||.|++ ++++|++-+.|+++++||+++.+..-.. ..+....+-+.++|||+.++|++|.. .|.+.+||..+-
T Consensus 369 si~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 369 SISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred EEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence 999999 9999999999999999999975542211 11234455678999999999999864 578999998765
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
+.+. ...+. ..+...+.|+|.- .+.+ .|+.||.+++|-
T Consensus 448 d~v~-------ki~i~-~aSvv~~~WhpkL--------NQi~----~gsgdG~~~vyY 485 (641)
T KOG0772|consen 448 DTVY-------KIDIS-TASVVRCLWHPKL--------NQIF----AGSGDGTAHVYY 485 (641)
T ss_pred eeEE-------EecCC-CceEEEEeecchh--------hhee----eecCCCceEEEE
Confidence 5422 11111 3344589999983 3333 377889998874
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=187.44 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=216.6
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...++.|.||.+.|+.++..... .++.+++.|.+.+||.++++.++..+ .+|.+.|++++|++. +.++++++.|++-
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s-~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS-GLLLLTASGDETA 214 (481)
T ss_pred EeehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeee-cccccceeeEEeccc-cceEEEccCCcch
Confidence 34567789999999999998776 58999999999999999999999999 799999999999999 9999999999999
Q ss_pred EEEeC------CCCceee---------------------------eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC
Q 013086 143 SCTDL------ETGLALS---------------------------LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189 (449)
Q Consensus 143 ~iwd~------~~~~~~~---------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 189 (449)
.||.. ....... ++..+-..+. .+...|.+..|-..+..+++++.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeec
Confidence 99972 1100000 0000000011 12334777888889999999999
Q ss_pred CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEc
Q 013086 190 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFS 268 (449)
Q Consensus 190 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~ 268 (449)
|.+..+||++++..+.. +.. |....+.++-+| ...++++.+.|.+.++||++ +.++.+..+ +|...|+++.|.
T Consensus 293 DRTAnlwDVEtge~v~~-LtG--Hd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNI-LTG--HDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred cccceeeeeccCceecc-ccC--cchhccccccCC-cceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEe
Confidence 99999999999987643 244 444788999999 99999999999999999998 344455445 899999999998
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 269 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
.+. .+++|+.|.+|++||++..+. +...+-..... .++..+. .+..++ .-..+.+|++|
T Consensus 367 ~dd-~vVSgSDDrTvKvWdLrNMRs--plATIRtdS~~------NRvavs~---------g~~iIA---iPhDNRqvRlf 425 (481)
T KOG0300|consen 367 TDD-RVVSGSDDRTVKVWDLRNMRS--PLATIRTDSPA------NRVAVSK---------GHPIIA---IPHDNRQVRLF 425 (481)
T ss_pred cCC-ceeecCCCceEEEeeeccccC--cceeeecCCcc------ceeEeec---------CCceEE---eccCCceEEEE
Confidence 765 588999999999999986542 11111100000 0111111 122333 34566789999
Q ss_pred ECCCceEEEEEe----cCccceeceeeecCCCC--cEEeecC-CCeEEEEcCCCch
Q 013086 349 DITTGQLVAEVM----DPNITTISPVNKLHPRD--DVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 349 d~~~~~~~~~~~----~~~~~~v~~v~~~~~~~--~~l~s~s-dg~i~iw~~~~~~ 397 (449)
|++..+ +..+. ..|..-++++ +|..+. .-|.+++ |..+.=|++....
T Consensus 426 DlnG~R-laRlPrtsRqgHrRMV~c~-AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 426 DLNGNR-LARLPRTSRQGHRRMVTCC-AWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ecCCCc-cccCCcccccccceeeeee-eccccCcccccccccccceeeeeEecccC
Confidence 996443 33332 3343667777 886543 3466777 9999999987543
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=191.00 Aligned_cols=293 Identities=14% Similarity=0.198 Sum_probs=220.0
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE----E------------Ee-cccCCceeEE
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI----V------------YG-NIHSCIVNNI 123 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~----~------------~~-~~h~~~v~~~ 123 (449)
|....+..+..|.-+|.+++++|++ .+.++++.+++|.=|++.++.... . .. .+|...+.++
T Consensus 130 ~~s~~~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 130 PESSDFRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred cccccceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 3334467888999999999999998 689999999999999997765331 0 11 2688899999
Q ss_pred EEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCC
Q 013086 124 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 203 (449)
Q Consensus 124 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 203 (449)
+.+++ +.+|++|+.|..|.||+.++.+.+..+..+... |.+++|-.....+++++.|..|++|++.....
T Consensus 209 avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~---------V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 209 AVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA---------VSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred EEcCC-CcEEEecCCCceEEEecCcccchhhcccccccc---------eeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 99999 999999999999999999999998887665543 99999999999999999999999999998765
Q ss_pred ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcE
Q 013086 204 SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283 (449)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 283 (449)
+. ..+.|+..|.+|.... .+..+-+|+.|+++++|++.. . ..+...++.+.+-|++|- +...+++|+.+|.|
T Consensus 279 ve---tlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--e-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 279 VE---TLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--E-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSI 350 (479)
T ss_pred HH---HHhCCccceeeechhc-ccceEEeccccceeEEEeccc--c-ceeeeeCCCCCeeeEEEe-cccceeeccCCceE
Confidence 54 3456666899998887 777788888999999999943 2 233334788899999997 45679999999999
Q ss_pred EEEeCCCCCCCCCCccceecCCCCc---------cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc-
Q 013086 284 RIWDSIFGNLDSPSREIVHSHDFNR---------HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG- 353 (449)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~- 353 (449)
.+|++...+.+..... .|.... +.+ .++--|. ..+++ +|+.+|.|++|-+.++
T Consensus 351 aLWs~~KKkplf~~~~---AHgv~~~~~~~~~~~Wit--sla~i~~---------sdL~a---sGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRL---AHGVIPELDPVNGNFWIT--SLAVIPG---------SDLLA---SGSWSGCVRLWKIEDGL 413 (479)
T ss_pred EEeeecccCceeEeec---cccccCCcccccccccee--eeEeccc---------CceEE---ecCCCCceEEEEecCCc
Confidence 9999977665321111 111110 111 1111221 33444 7999999999999988
Q ss_pred ---eEEEEEecCccceeceeeecCCCCcEEeecC--CCeEEEEc
Q 013086 354 ---QLVAEVMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWR 392 (449)
Q Consensus 354 ---~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--dg~i~iw~ 392 (449)
.++..+. -.+.|+.+ +|+++|+.|++|- ...+--|-
T Consensus 414 r~i~~l~~ls--~~GfVNsl-~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 414 RAINLLYSLS--LVGFVNSL-AFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cccceeeecc--cccEEEEE-EEccCCCEEEEecccccccceee
Confidence 3333433 33677788 8999999666654 55554443
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=185.83 Aligned_cols=267 Identities=17% Similarity=0.263 Sum_probs=199.4
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC----ceeeeeecCCCC-----CCCCCcccceeEEEEecCCCE
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG----LALSLMNVNPNG-----WHGPRTWRMLYGMDINPEKGV 183 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~ 183 (449)
...|..++.+.+|+++ +.++++|+.|..|+|.|++.. +........... ..-..+...|.++.|+|....
T Consensus 108 lt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3569999999999999 999999999999999998721 111111111110 011233446999999999999
Q ss_pred EEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce-eecCCCCcE
Q 013086 184 VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVV 262 (449)
Q Consensus 184 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v 262 (449)
|++|+.|++|+++|.......... .......+|.++.|+| .|.+|++|..-..+++||+.+.+..... ...+|.+.|
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~-K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAF-KVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHH-HHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999765433222 2222333899999999 9999999999999999999875542211 122689999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCC
Q 013086 263 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 342 (449)
Q Consensus 263 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d 342 (449)
+++.+++.+++.++++.||.|++||--+++++..... .+ +........|..+ |+|+. +.+.|
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~---AH---~gsevcSa~Ftkn---------~kyiL---sSG~D 326 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN---AH---GGSEVCSAVFTKN---------GKYIL---SSGKD 326 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh---hc---CCceeeeEEEccC---------CeEEe---ecCCc
Confidence 9999999999999999999999999988877543221 11 1112234556665 89998 89999
Q ss_pred cceEEEECCCceEEEEEecCccc-----eeceeeecCCCCcEEeecC--CCeEEEEcCCCchhhhhh
Q 013086 343 HPIDFIDITTGQLVAEVMDPNIT-----TISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQ 402 (449)
Q Consensus 343 ~~i~iwd~~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~~l~s~s--dg~i~iw~~~~~~~~~~~ 402 (449)
..+++|.+.+++.+..+.+.... .-.+ .|+....+++.-. .+.+.-||.+++..+...
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA--vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQA--VFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhh--hhcCccceEEccccccCceeeccccchhhhhhc
Confidence 99999999999999999876321 1222 4888888888866 589999999998866654
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=9.8e-25 Score=194.25 Aligned_cols=282 Identities=13% Similarity=0.186 Sum_probs=197.3
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
.++++++.|+.|++||+.+++....+. .+ ..+.+++|+|+ +..+ ++++.++.|++||+.+++....+.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---- 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----
Confidence 478899999999999998887776663 33 44678999999 7665 5677889999999998877665532211
Q ss_pred CCcccceeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC-eEEEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-FARIWD 243 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd 243 (449)
+..++|+|+++.++++ ..++.+++||+.+...... ......+.+++|+| ++.++++++.++ .+.+||
T Consensus 75 ------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~----~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 75 ------PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE----IPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFID 143 (300)
T ss_pred ------ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE----eeCCCCcceEEECC-CCCEEEEEecCCCeEEEEe
Confidence 4578899999977665 5689999999987553321 12223578899999 999999888765 467789
Q ss_pred ccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 244 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
..+... .........+.+++|+|++++|+++ ..++.|++||+.+++......... .........+..+.|+|+
T Consensus 144 ~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~d-- 217 (300)
T TIGR03866 144 TKTYEI---VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-PGVHPEAVQPVGIKLTKD-- 217 (300)
T ss_pred CCCCeE---EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-cccccccCCccceEECCC--
Confidence 875433 2212223346789999999988655 468999999999876533211000 000011222345678887
Q ss_pred CCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec-C-CCeEEEEcCCCchhhh
Q 013086 323 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG-S-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~-s-dg~i~iw~~~~~~~~~ 400 (449)
|+++.. ....++.|.+||+.+++.+..+..+ ..+..+ +|+|+|++|+++ + +|.|++||+.+++.+.
T Consensus 218 -------g~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 218 -------GKTAFV--ALGPANRVAVVDAKTYEVLDYLLVG--QRVWQL-AFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred -------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEeC--CCcceE-EECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 443221 1234567999999999887665433 346667 899999999875 4 8999999999998777
Q ss_pred hhhc
Q 013086 401 EQKE 404 (449)
Q Consensus 401 ~~~~ 404 (449)
.++.
T Consensus 286 ~~~~ 289 (300)
T TIGR03866 286 SIKV 289 (300)
T ss_pred EEEc
Confidence 6654
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-26 Score=200.55 Aligned_cols=244 Identities=18% Similarity=0.315 Sum_probs=197.8
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
..+.+.|+++.|+++| .+|++|..+|.|.|||.........+...|...|-+++|. ...+.+|+.|+.|..+|++.
T Consensus 214 ~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred ecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEec
Confidence 3347899999999999 6899999999999999999888888844499999999998 55899999999999999998
Q ss_pred Cceeee-eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 150 GLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 150 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
.+.... +..+.. .|..+.|++++.++|+|+.|+.+.|||.....+. .....|.+.|.+++|+|....
T Consensus 290 ~~~~~~~~~~H~q---------eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~---~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQ---------EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK---FTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred chhhhhhhhcccc---------eeeeeEECCCCCeeccCCCccceEeccCCCcccc---EEEeccceeeeEeeeCCCccC
Confidence 776655 333332 3999999999999999999999999999555443 355667779999999999999
Q ss_pred EEEEEe--CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCCccceecC
Q 013086 229 LLLSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSH 304 (449)
Q Consensus 229 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~ 304 (449)
+||+|+ .|+.|++||..++.. +......+.|.+|.|++..+.|+++. .++.|.||+..+.+.. .
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~---i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------~ 425 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGAR---IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------A 425 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcE---ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---------e
Confidence 999976 589999999986444 44445678999999999887776643 4779999999774432 1
Q ss_pred CCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 305 DFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 305 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
.+.+|. ..+.++++|+ |.+++ +|+.|.++++|++-+.
T Consensus 426 ~l~gH~~RVl~la~SPd---------g~~i~---t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPD---------GETIV---TGAADETLRFWNLFDE 463 (484)
T ss_pred eecCCcceeEEEEECCC---------CCEEE---EecccCcEEeccccCC
Confidence 222222 2357899999 77777 8999999999998765
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-25 Score=170.96 Aligned_cols=262 Identities=19% Similarity=0.270 Sum_probs=194.0
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE----EEecccCCceeEEEEeeC---CCCe
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI----VYGNIHSCIVNNIRFNPT---NDGT 132 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~----~~~~~h~~~v~~~~~~~~---~~~~ 132 (449)
.|.....+.-+.|.+.|+|.+|+|+| .++++|+.|.+|++.-.....+.. .-...|.+.|..++|..+ ++..
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 34444556677899999999999999 699999999999998765432211 111459999999999754 3567
Q ss_pred EEEEeC-CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE-e
Q 013086 133 VYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-I 210 (449)
Q Consensus 133 l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~ 210 (449)
|++++. |..|++-|...|+....+..+... |.++ ++-++-.+++|+.|.+|++||++-...+..+-. .
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtgh---------ilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGH---------ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCccc---------EEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 777665 778888899888888777655442 5554 456788999999999999999998765543221 2
Q ss_pred ecC---CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 211 HRK---GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 211 ~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
+.. .+.|.++++.| .+++|++|..|....+||++.+...+.+ .+|...|.++.|+|...+|++++.|..|++-|
T Consensus 225 ~~~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f--~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred cCCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeee--CCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 222 25799999999 9999999999999999999976554433 37999999999999999999999999999999
Q ss_pred CCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
++. .+........ ..+..-..+.+.|+|.+. .|+ +.+.|.++.+|-+.
T Consensus 302 lqg-dla~el~~~v---v~ehkdk~i~~rwh~~d~--------sfi----sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 302 LQG-DLAHELPIMV---VAEHKDKAIQCRWHPQDF--------SFI----SSSADKTATLWALN 349 (350)
T ss_pred ccc-chhhcCceEE---EEeccCceEEEEecCccc--------eee----eccCcceEEEeccC
Confidence 963 3322111111 112233446889999741 122 47889999999753
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=188.26 Aligned_cols=293 Identities=14% Similarity=0.259 Sum_probs=215.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee--EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
.+.|+++.|+|.. .+|++++.|++++||.+...... ..+ .-...+|.+..|.|++...+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 4689999999998 68999999999999998764332 222 2356789999999993339999999999999999988
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
+....-...... ...+..+.+++++++|+..+..|.|.+....++..+..+ ...+.|..++|+. ++..|
T Consensus 291 k~~k~~~~~g~e------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsS-dsk~l 359 (514)
T KOG2055|consen 291 KVTKLKPPYGVE------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSS-DSKEL 359 (514)
T ss_pred ccccccCCCCcc------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEec-CCcEE
Confidence 765443221111 223778899999999999999999999999988766432 2334799999998 88999
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcE--EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV--NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
++.+.+|.|++||++.... +..+...+.| ++++.++++.+||+|+..|.|.|||..+-........+.....+.
T Consensus 360 ~~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt- 435 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT- 435 (514)
T ss_pred EEEcCCceEEEEecCCcce---EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-
Confidence 9999999999999997644 3333233333 567788999999999999999999976543322222111111111
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec--CccceeceeeecCCCCcEEeecC-C
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD--PNITTISPVNKLHPRDDVLASGS-S 385 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~s~s-d 385 (449)
..+..+.|+|+ ++.++.. +-...+.+++-.+.+......+.. ...+.++++ +|+|.+.+||.|. +
T Consensus 436 -t~Itsl~Fn~d---------~qiLAia-S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 436 -TAITSLQFNHD---------AQILAIA-SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-AFSPNSGYLAVGNEA 503 (514)
T ss_pred -eeeeeeeeCcc---------hhhhhhh-hhccccceEEEeccceeeeccCCCCCCcccceEEE-EecCCCceEEeecCC
Confidence 11236788888 3433311 345667899988887776665543 334567788 9999999999999 8
Q ss_pred CeEEEEcCC
Q 013086 386 RSIFIWRPK 394 (449)
Q Consensus 386 g~i~iw~~~ 394 (449)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=194.51 Aligned_cols=246 Identities=16% Similarity=0.230 Sum_probs=195.8
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
.+.+|.|-.+.|+++.|.+++ +.+++++.|+.+++|++...+...++ .+|...|+++.|... ...+++|+.|.+|++
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLS-HSRVVSGSADRTIKL 287 (459)
T ss_pred hhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhcc-ccceeeccccchhhh
Confidence 567888999999999999999 67888889999999999999888888 689999999999987 555999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
||+....+..++-.... +..+..+ ...+++|..|+.|++||.++...... -..++.|+++..++
T Consensus 288 WDl~k~~C~kt~l~~S~----------cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s----v~~gg~vtSl~ls~ 351 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQ----------CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS----VPLGGRVTSLDLSM 351 (459)
T ss_pred hhhhhhheecccccccc----------ccceEec--ceeeeecccccceEEEeccCCceeeE----eecCcceeeEeecc
Confidence 99999887776543222 3344433 56788899999999999998776532 23334899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeecC--CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcccee
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
++..+++++.|.++.+.|+++.+....+...+ ....++.+.|||++.|+++||.||.|+||++.++++.......
T Consensus 352 -~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-- 428 (459)
T KOG0288|consen 352 -DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-- 428 (459)
T ss_pred -CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--
Confidence 99999999999999999999866544443332 3345899999999999999999999999999999874422211
Q ss_pred cCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 303 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
.....++++.|+|. |.++. +++.++.+.+|
T Consensus 429 ----~s~~aI~s~~W~~s---------G~~Ll---sadk~~~v~lW 458 (459)
T KOG0288|consen 429 ----TSNAAITSLSWNPS---------GSGLL---SADKQKAVTLW 458 (459)
T ss_pred ----CCCcceEEEEEcCC---------Cchhh---cccCCcceEec
Confidence 11113468899997 77776 67778888887
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.8e-25 Score=199.61 Aligned_cols=321 Identities=12% Similarity=0.128 Sum_probs=229.8
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc-CCceeEEEEeeCCCCeEEE
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s 135 (449)
.+.....+.+.+++++...|+++.-+|-- ..+|.|..+|+|.|+++...+.+..+. | .+.|+.+.|..|+...+++
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las 262 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLAS 262 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEe
Confidence 35555678889999999999999999987 489999999999999999999999986 5 5999999999997778888
Q ss_pred EeCCCeEEEEeCCCCceeeeeec-CCCCCCC-------------------------------------CCcccceeEEEE
Q 013086 136 ASSDGTVSCTDLETGLALSLMNV-NPNGWHG-------------------------------------PRTWRMLYGMDI 177 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~-------------------------------------~~~~~~i~~~~~ 177 (449)
|+..|.+.+||++..+.+..+.. +.....+ ..+..+..++.|
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 88889999999998776655542 2111000 001112333444
Q ss_pred e-cCCCEEEEEcCCCeEEEEECCC--------------------------------------------------------
Q 013086 178 N-PEKGVVLVADNFGFLYLVDART-------------------------------------------------------- 200 (449)
Q Consensus 178 ~-~~~~~l~~~~~dg~i~i~d~~~-------------------------------------------------------- 200 (449)
. .++..+.+++.|++.+.+++..
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 3 3344455555555444433211
Q ss_pred ---------CCCccceEEee----cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee-ecCCCCcEEEEE
Q 013086 201 ---------NSRSGEAILIH----RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAY 266 (449)
Q Consensus 201 ---------~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~ 266 (449)
...- .....+ .....+++++.++ .|++.+.|+..|.|-+|+++++-....+. ...|..+|+.++
T Consensus 423 ~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 423 SAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred eEEEEeccCcccc-cEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 0000 000000 1224578899999 99999999999999999998765544442 236999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceE
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPID 346 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~ 346 (449)
...-++.+++++.+|.+.+||.....+.... ...... ..+.++.. ...++ .+..|-.|+
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-------~l~~~~--~~iv~hr~---------s~l~a---~~~ddf~I~ 559 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSL-------RLGSSI--TGIVYHRV---------SDLLA---IALDDFSIR 559 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeee-------ccCCCc--ceeeeeeh---------hhhhh---hhcCceeEE
Confidence 9998999999999999999999876542211 111110 11122211 22222 467888999
Q ss_pred EEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 347 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
++|+.+.+.++.+.+|. ..++.+ +|||||++|++++ |++|++||+.++.++..+..+
T Consensus 560 vvD~~t~kvvR~f~gh~-nritd~-~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHG-NRITDM-TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred EEEchhhhhhHHhhccc-cceeee-EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 99999999999999998 889998 9999999999999 999999999999877665433
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.8e-25 Score=198.35 Aligned_cols=314 Identities=17% Similarity=0.188 Sum_probs=225.3
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE--ecccCCceeEEEEeeC----------CCCeEEEEeCCCeEE
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNPT----------NDGTVYAASSDGTVS 143 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~--~~~h~~~v~~~~~~~~----------~~~~l~s~~~dg~v~ 143 (449)
..++.|++..+ .|.....|..++|||+.....+... ..-|...|+++.--|- ....|++++.|++|+
T Consensus 327 ~IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 45788998874 5777788999999999874432211 1248888888877662 134699999999999
Q ss_pred EEeCCCCceeeeee----------------------------cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 144 CTDLETGLALSLMN----------------------------VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 144 iwd~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
+|++..+..-..+. +.............+.+++++|++++|++|..-|.+++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99998632111110 00000111233346999999999999999999999999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCC--CCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCC-
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG- 271 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~- 271 (449)
|++....... ....|...|.|+.|+-. ...+|++++.|..|.+||+.. ....++.+ +|...|+++.|.-+|
T Consensus 486 y~Lq~l~~~~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--ny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 486 YDLQELEYTC---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--NYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred EEehhhhhhh---heecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--ccchhhhhcccccceeEEEEeecCC
Confidence 9998866543 44556668999999852 346899999999999999964 22233444 799999999999877
Q ss_pred -CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 272 -SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 272 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
..+++++.|..|.+ +..... ..-..........++.+.+.+...|. .++++ ++..|..|+|||+
T Consensus 561 n~~MiscGADksimF-r~~qk~--~~g~~f~r~t~t~~ktTlYDm~Vdp~---------~k~v~---t~cQDrnirif~i 625 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMF-RVNQKA--SSGRLFPRHTQTLSKTTLYDMAVDPT---------SKLVV---TVCQDRNIRIFDI 625 (1080)
T ss_pred ceEEEeccCchhhhe-ehhccc--cCceeccccccccccceEEEeeeCCC---------cceEE---EEecccceEEEec
Confidence 78899999987654 432200 00011111222233344455666666 45555 6889999999999
Q ss_pred CCceEEEEEecCcc--ceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 351 TTGQLVAEVMDPNI--TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 351 ~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
.+|+.+..|.+.+. +....+ ...|.|.|||+.. |.++.++|+.+|+++.++.+|+++++.
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv-~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKV-ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred cccceeeeecccccCCCceEEE-EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee
Confidence 99999999986542 334444 6899999999977 999999999999999999999998765
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.8e-25 Score=197.70 Aligned_cols=282 Identities=14% Similarity=0.180 Sum_probs=214.3
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE-EEecccCCceeE-EEEeeCCCCeEEEEeCCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNN-IRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg 140 (449)
...-+.+.||+..|..+++.+.. .+++++.||++++|+-...+... ....+|.+-|.. +++.+..+..+++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 34457899999999999988765 68999999999999986654433 333567777776 888864356799999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
++.+|...+......+..|... |.+++...++. +++|+.|.++++|-...... ....|...|.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~sn---------VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv 146 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSN---------VCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----SLQGHTASVWAV 146 (745)
T ss_pred eEEEEecCCCCchhhhhccccc---------eeeeecCCcCc-eEecccccceEEecchhhhc-----ccCCcchheeee
Confidence 9999999999998888776654 88988877777 99999999999998776432 245666689999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
+..| ++ .+++|+.|.+|++|.-. ..++.+ +|.+.|..+++-+++ .|++++.||.|++|++ +|+++.
T Consensus 147 ~~l~-e~-~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~---- 213 (745)
T KOG0301|consen 147 ASLP-EN-TYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL---- 213 (745)
T ss_pred eecC-CC-cEEeccCcceeeeccCC-----chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee----
Confidence 9998 55 89999999999999863 233333 799999999998765 4789999999999999 455422
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcE
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 379 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 379 (449)
..+..... .+++...+. +..++ +.++|++++||+.. .+.+.+..+. ..++++ .+-++|.+
T Consensus 214 --~~~ghtn~--vYsis~~~~---------~~~Iv---s~gEDrtlriW~~~--e~~q~I~lPt-tsiWsa-~~L~NgDI 273 (745)
T KOG0301|consen 214 --EMHGHTNF--VYSISMALS---------DGLIV---STGEDRTLRIWKKD--ECVQVITLPT-TSIWSA-KVLLNGDI 273 (745)
T ss_pred --eeeccceE--EEEEEecCC---------CCeEE---EecCCceEEEeecC--ceEEEEecCc-cceEEE-EEeeCCCE
Confidence 11111111 123332222 34444 68899999999976 7777776665 567776 67788887
Q ss_pred EeecCCCeEEEEcCC
Q 013086 380 LASGSSRSIFIWRPK 394 (449)
Q Consensus 380 l~s~sdg~i~iw~~~ 394 (449)
++.||||.||||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 777779999999865
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=201.31 Aligned_cols=277 Identities=14% Similarity=0.237 Sum_probs=214.8
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC-eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
-+|+..-+.++|.|+| .+|++++.||.|++|+.... ..+..+ ..++..|.+++-. .++|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY---SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence 3699999999999999 58999999999999998776 444444 3378888888765 5699999999999999998
Q ss_pred CCcee---eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLAL---SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++..- ..+.+ ++..++++.+|++++.|+.|-.|++.++....... ....+.++|.++.|+|
T Consensus 85 s~~~~~iL~Rftl------------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p- 148 (933)
T KOG1274|consen 85 SGEEDTILARFTL------------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDP- 148 (933)
T ss_pred CCCccceeeeeec------------cceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcC-
Confidence 87643 33333 28899999999999999999999999998876543 4556677999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeec------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
++++||+.+.||.|++||+.++.....+... .....+..++|+|+|..|++.+.|+.|.+|+...+.....++.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 9999999999999999999876654444322 1245677899999988899999999999999988776443322
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcE
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 379 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 379 (449)
-.... ....+.|+|. |+|++ +++.+|.|-|||..+-.. ......|+++ +|.|+.+.
T Consensus 229 ~~~ss------~~~~~~wsPn---------G~YiA---As~~~g~I~vWnv~t~~~-----~~~~~~Vc~~-aw~p~~n~ 284 (933)
T KOG1274|consen 229 KLSSS------KFSDLQWSPN---------GKYIA---ASTLDGQILVWNVDTHER-----HEFKRAVCCE-AWKPNANA 284 (933)
T ss_pred ccccc------ceEEEEEcCC---------CcEEe---eeccCCcEEEEecccchh-----ccccceeEEE-ecCCCCCe
Confidence 21111 1347899999 99999 899999999999987222 1122566666 99999876
Q ss_pred EeecC-CCeEEEE
Q 013086 380 LASGS-SRSIFIW 391 (449)
Q Consensus 380 l~s~s-dg~i~iw 391 (449)
+-.-. -|...+|
T Consensus 285 it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 285 ITLITALGTLGVS 297 (933)
T ss_pred eEEEeeccccccC
Confidence 65544 4555554
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=189.44 Aligned_cols=260 Identities=16% Similarity=0.229 Sum_probs=206.1
Q ss_pred cCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE
Q 013086 55 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY 134 (449)
Q Consensus 55 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 134 (449)
...|......|+..|+.|.+.|..|++.. + .+++++.|.+|+.|.+... ...++. ....+..|.-+.. +..++
T Consensus 91 VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~-~~~Fa 163 (433)
T KOG0268|consen 91 VKIWNLSQRECIRTFKAHEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRK-NSVFA 163 (433)
T ss_pred EEEEehhhhhhhheeecccCceeeEEecc-c--ceEEecCCcceeeeeccCC-cceeee--ccccccccccccc-ccccc
Confidence 34567777888899999999999999987 3 3788999999999998774 334442 4556777777766 78899
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 135 AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 135 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
|++.+ |.|||.+....+..+...... |.++.|+|... .|+++..|+.|.+||+++..++..+....
T Consensus 164 TcGe~--i~IWD~~R~~Pv~smswG~Dt---------i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-- 230 (433)
T KOG0268|consen 164 TCGEQ--IDIWDEQRDNPVSSMSWGADS---------ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-- 230 (433)
T ss_pred ccCce--eeecccccCCccceeecCCCc---------eeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec--
Confidence 99864 999999888888777655443 89999999765 56667799999999999999886654332
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.-+.|+|+| +...+++|+.|..++.||++.......+ ..+|.+.|..+.|||.|+-+++||.|.+|+||.++.+..
T Consensus 231 --RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v-~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 231 --RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNV-HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred --cccceecCc-cccceeeccccccceehhhhhhcccchh-hcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 577899999 9999999999999999999986653222 237999999999999999999999999999999987654
Q ss_pred CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEE
Q 013086 294 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 357 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~ 357 (449)
+.+.+.. +....+++.|+.+ .+|+. +|+.|+.|++|.....+.+.
T Consensus 307 ----RdiYhtk---RMq~V~~Vk~S~D---------skyi~---SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 307 ----RDIYHTK---RMQHVFCVKYSMD---------SKYII---SGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ----hhhhhHh---hhheeeEEEEecc---------ccEEE---ecCCCcceeeeecchhhhcC
Confidence 2223322 2334468999998 88888 89999999999986655443
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=200.82 Aligned_cols=300 Identities=17% Similarity=0.269 Sum_probs=231.1
Q ss_pred cceeeeccCccEEEEEEeCCC----------CcEEEEEcCCCcEEEEeCcCCeeeEEE----e-----------------
Q 013086 65 NCAVIRYHSRRVTCLEFHPTN----------NHILLSGDKKGQVGVWDFYKVSEKIVY----G----------------- 113 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~----------~~~l~t~~~d~~i~vwd~~~~~~~~~~----~----------------- 113 (449)
....+-.|+..|+.+.--|.+ +.-++|++.|++|++|++.....-..+ .
T Consensus 361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 345667788889888776521 124899999999999999652110000 0
Q ss_pred ---------------cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe
Q 013086 114 ---------------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN 178 (449)
Q Consensus 114 ---------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 178 (449)
......+.+++.+|+ +++|++|..-|++++|++..-.....+..+... |.|+.++
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE---------ilcLeyS 510 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESE---------ILCLEYS 510 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccce---------eEEEeec
Confidence 113456999999999 999999999999999999988888887766554 9999998
Q ss_pred c---CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC--CEEEEEeCCCeEEEEEccCCCCCCce
Q 013086 179 P---EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 179 ~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 253 (449)
. ..++|++++.|..|++||....-.+.. ....|...|+++.|.- ++ ..+++++.|..|.+--.+....+..+
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~q--tld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQ--TLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccchhh--hhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceec
Confidence 6 357899999999999999987665544 3455666899999987 44 57889999988775443322222222
Q ss_pred eec---CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEc
Q 013086 254 CDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIG 330 (449)
Q Consensus 254 ~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 330 (449)
... -....+..|+..|..+++++++.|..|+|||+..|++.+.. ..........+++..+|. |
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F-----Kgs~~~eG~lIKv~lDPS---------g 653 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF-----KGSRDHEGDLIKVILDPS---------G 653 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee-----cccccCCCceEEEEECCC---------c
Confidence 111 12457889999999999999999999999999999875432 222233344567888887 8
Q ss_pred ceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 331 RYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 331 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
-|++ +...|.++.++|..+|+++.++.+|. ..++.+ .|.+|-+.|++.+ ||.|.||.+...
T Consensus 654 iY~a---tScsdktl~~~Df~sgEcvA~m~GHs-E~VTG~-kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 654 IYLA---TSCSDKTLCFVDFVSGECVAQMTGHS-EAVTGV-KFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cEEE---EeecCCceEEEEeccchhhhhhcCcc-hheeee-eecccchhheeecCCceEEEEECchh
Confidence 8888 78899999999999999999999998 889999 8999999999988 999999998753
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-26 Score=201.19 Aligned_cols=287 Identities=19% Similarity=0.276 Sum_probs=203.6
Q ss_pred cCccEE---EEEEeCCCCcEEEEEcCCCcEEEEeCcCCee------eEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 72 HSRRVT---CLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 72 h~~~V~---~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
|...|. .+..+..+.++|+||+.||.|++|+...... ...+ +.|...|++++...+ ++.|++++.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~-~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN-GKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence 445555 5666666667999999999999999865332 3333 679999999999888 8899999999999
Q ss_pred EEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEE-ecCCCEEEEEcCCCeEEEEECCCCCC--cc------ceEEee
Q 013086 143 SCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDI-NPEKGVVLVADNFGFLYLVDARTNSR--SG------EAILIH 211 (449)
Q Consensus 143 ~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~~------~~~~~~ 211 (449)
++|+...+ -++..+..|.. .|.|+++ .++..++|+|+-|+.|.+||+.++.. .. ..-...
T Consensus 98 K~W~~~~~~~~c~stir~H~D---------YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKD---------YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred EEeecccCcchhHhhhhcccc---------hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 99999877 45555544433 3999999 77888999999999999999997632 10 000111
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+....|++++.++ .+..|++|+..+.|++||.++.+.. +...+|...|..+..++||..+++++.||+|++||+...
T Consensus 169 G~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~ki--mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKI--MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CCccceeeeecCC-cceEEEecCcccceEEeccccccce--eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 3445799999999 8899999999999999999986654 444489999999999999999999999999999999877
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceee
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 371 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 371 (449)
+++... ..+. ...|+-.. ..-+...|+|+.|+.|..=|+.+......+-... ..+..+
T Consensus 246 rCl~T~----~vH~--------e~VWaL~~--------~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d-aPv~~l- 303 (735)
T KOG0308|consen 246 RCLATY----IVHK--------EGVWALQS--------SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED-APVLKL- 303 (735)
T ss_pred ceeeeE----Eecc--------CceEEEee--------CCCcceEEecCCCCcEEecccCCchhheEeecCC-Cchhhh-
Confidence 764321 1111 11222211 1112223479999999999998853322222111 334433
Q ss_pred ecCCCCcEEeecC-CCeEEEEcCC
Q 013086 372 KLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 372 ~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..+.+.+-+-+++ |+.|+-|...
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hhccccCCceeeeccccceecCCc
Confidence 3443333334444 7888888643
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=200.04 Aligned_cols=251 Identities=14% Similarity=0.203 Sum_probs=200.1
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 192 (449)
.+|....+.|+|.|+ +.+|++++.||.|++|+.... .....+... ...+.+++ ....+|++++.+++
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~---------g~~v~~ia--~~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDIS---------GELVSSIA--CYSNHFLTGSEQNT 77 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhcc---------CceeEEEe--ecccceEEeeccce
Confidence 358899999999999 889999999999999997665 222222211 11244444 45669999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
|.+|.+..+.....+. +...++.+++++- ++.+++.|+.|-.|++.++..... .....+|.++|.++.|+|++.
T Consensus 78 v~~y~fps~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred EEEeeCCCCCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcCCCC
Confidence 9999998877654322 2233799999998 999999999999999999986544 344458999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+||+.+.||.|++||+.++.+......+.....+.........+|+|+. |++++ -..|+.|.+|+..+
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~--------g~la~----~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG--------GTLAV----PPVDNTVKVYSRKG 219 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC--------CeEEe----eccCCeEEEEccCC
Confidence 9999999999999999999887666666555555544444578999995 45444 56789999999999
Q ss_pred ceEEEEEecCccce-eceeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 353 GQLVAEVMDPNITT-ISPVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 353 ~~~~~~~~~~~~~~-v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
+.....+....... +..+ +|+|+|.|||+++ ||.|.|||+++
T Consensus 220 we~~f~Lr~~~~ss~~~~~-~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDL-QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeheeecccccccceEEE-EEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999998765555 4555 9999999999999 99999999997
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=6.9e-25 Score=173.54 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=199.9
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
...+|..-....+-++.||++.|+|+..+.+. +.++||+.|.++++||+++++++..+. ...+|..+.|+++ ++++
T Consensus 33 ~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~-gn~~ 108 (327)
T KOG0643|consen 33 TPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG-GNLI 108 (327)
T ss_pred CceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC-CcEE
Confidence 33445555666778999999999999999988 689999999999999999999999885 7889999999998 7777
Q ss_pred EEEeC-----CCeEEEEeCCCC-------ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC
Q 013086 134 YAASS-----DGTVSCTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 201 (449)
Q Consensus 134 ~s~~~-----dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 201 (449)
+.+.. .+.|.++|++.. .+...+..+. ..++.+-|.|-+.+|++|..+|.|..||++++
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---------skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---------SKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---------cceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 66653 478999999843 2233333222 34889999999999999999999999999998
Q ss_pred CCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 202 SRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
.........|. ..|+.+.+++ +..++++++.|.+-++||+++.+. ++.+....+|++.+++|....++.|+...
T Consensus 180 ~~~v~s~~~h~--~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v---~Kty~te~PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 180 KELVDSDEEHS--SKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV---LKTYTTERPVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred ceeeechhhhc--cccccccccC-CcceEEecccCccceeeeccceee---EEEeeecccccceecccccceEEecCCce
Confidence 76654434444 4899999999 999999999999999999987554 44445678999999999777777666433
Q ss_pred cE--EEEeCCCCCCCCCCcccee---cCCCCccccc-eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 282 RL--RIWDSIFGNLDSPSREIVH---SHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 282 ~i--~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.. .-=+.+.|+.....-..+. .....+|..+ ..++|+|+ |+..+ +|+.||.|++.-..
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd---------GksYs---SGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD---------GKSYS---SGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC---------Ccccc---cCCCCceEEEEEec
Confidence 32 2223333433221111111 1223344433 36899999 77666 89999999987553
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-26 Score=202.95 Aligned_cols=298 Identities=12% Similarity=0.190 Sum_probs=210.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee--EEEe----cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYG----NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~--~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
....+|..+++-.+ ++.++. ..+.||.+...... .... +.-.-.+..+.|+....++|+|++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~q-iv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQ-IVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcce-eEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34667777888744 555553 46788877543211 1110 0111245678888655889999999999999999
Q ss_pred CC---CceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 148 ET---GLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 148 ~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
.. .+.+..+..|.. .+.++.|++. ..+|++|+.||.|++||++..+..... ......|..++|+
T Consensus 118 nk~~rnk~l~~f~EH~R---------s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---~~nSESiRDV~fs 185 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHER---------SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---RSNSESIRDVKFS 185 (839)
T ss_pred CccccchhhhHhhhhcc---------ceeeeeeccCCccEEEecCCCceEEEEeeecccccccc---cccchhhhceeec
Confidence 86 444445544443 3999999985 468899999999999999988765432 2344479999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
|..++.|+++...|.+++||+|.... ..++...|.++|.++.|+|++.+||||+.|+.|+|||+.+++... .
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-------~ 257 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP-------K 257 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-------e
Confidence 98899999999999999999996543 222233799999999999999999999999999999998755421 1
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC-CCcEEee
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RDDVLAS 382 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~s 382 (449)
+..+.....-++.|-|... +..+..+-..|-.|+|||+......+.....|...++.+ +|.. |...|.+
T Consensus 258 ~tInTiapv~rVkWRP~~~---------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i-~W~~~d~~~l~s 327 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARS---------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI-AWDSGDRINLWS 327 (839)
T ss_pred eEEeecceeeeeeeccCcc---------chhhhhhccccceEEEEeeccccccceeeeccCccccce-eccCCCceeeEe
Confidence 2222222334789999843 222222455678899999988776554444444777777 6754 5567888
Q ss_pred cC-CCeEEEEcCCCchhhhhhh
Q 013086 383 GS-SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 383 ~s-dg~i~iw~~~~~~~~~~~~ 403 (449)
++ ||.|..-.++++..-..+.
T Consensus 328 ~sKD~tv~qh~~knat~pid~a 349 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNATTPIDLA 349 (839)
T ss_pred ecCccHHHHhhhhcccChhhhc
Confidence 99 9998777766665444433
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=175.33 Aligned_cols=259 Identities=16% Similarity=0.171 Sum_probs=190.1
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEee-CCCCeEEEEeCCCeEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVS 143 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~ 143 (449)
.....|.+.|..+...-.| +.|||++.|++|+|+.+.+.. .+...+.+|.++|..++|.. .-+.+|++++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3456899999999998888 679999999999999998754 33334489999999999964 3389999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
||.-+.++..+..... .+...+++++|.|. |-.|++++.||.|.+++.+....-........|...|++++
T Consensus 84 iWke~~g~w~k~~e~~-------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHA-------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EEecCCCchhhhhhhh-------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 9998888554433211 11234899999885 56889999999999999887521111112233444699999
Q ss_pred EcCCC--C-----------CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC----CCEEEEeeCCCcEE
Q 013086 222 CNPIQ--P-----------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS----GSKILTTSQDNRLR 284 (449)
Q Consensus 222 ~~~~~--~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~ 284 (449)
|.|.. + ..|++|+.|..|+||+..+.+-.......+|.+.|..++|.|. ..+|++++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 99831 2 4699999999999999987532222222379999999999994 35799999999999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 364 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 364 (449)
||..+ .+.. -| ..+++.. -.
T Consensus 237 Iwt~~-~e~e----------------------------------------------------~w---k~tll~~----f~ 256 (299)
T KOG1332|consen 237 IWTKD-EEYE----------------------------------------------------PW---KKTLLEE----FP 256 (299)
T ss_pred EEEec-CccC----------------------------------------------------cc---ccccccc----CC
Confidence 99864 1110 01 1112222 22
Q ss_pred ceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 365 TTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 365 ~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..+..+ .||..|++|+.++ |..|.+|.-.
T Consensus 257 ~~~w~v-SWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRV-SWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cceEEE-EEeccccEEEEecCCcEEEEEEeC
Confidence 556677 8999999999977 9999999754
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.7e-25 Score=175.69 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=188.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 192 (449)
..-...|.+|+|+|....++++++.||+||+|+++. |....... .....++.+++|+.+|..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~--------~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ--------QSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh--------hccCCCeEEEEEccCCceEEeeccCCc
Confidence 446778999999996467777999999999999987 34333211 122234999999999999999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC--EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE--LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 270 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (449)
+++||+.+++.. ....|..+|..+.|-+ ... .|++|+.|.+|+.||+|.... +..+.....+.++.. -
T Consensus 96 ~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p---v~t~~LPeRvYa~Dv--~ 165 (347)
T KOG0647|consen 96 AKLWDLASGQVS----QVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP---VATLQLPERVYAADV--L 165 (347)
T ss_pred eEEEEccCCCee----eeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe---eeeeeccceeeehhc--c
Confidence 999999998643 4455666999999987 554 899999999999999996444 333445667777665 4
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
..+++++..+..|.+|+++.+...... . ...+.-.. -+++...+.. .+ + .|+-+|.+.|..+
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~--~--~SpLk~Q~--R~va~f~d~~--------~~-a---lGsiEGrv~iq~i 227 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKR--I--ESPLKWQT--RCVACFQDKD--------GF-A---LGSIEGRVAIQYI 227 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhh--h--cCccccee--eEEEEEecCC--------ce-E---eeeecceEEEEec
Confidence 567888899999999999765431100 0 00001011 0233333321 11 2 3788889999888
Q ss_pred CCc--eEEEEEecCc--------cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecC
Q 013086 351 TTG--QLVAEVMDPN--------ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 414 (449)
Q Consensus 351 ~~~--~~~~~~~~~~--------~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~ 414 (449)
..+ +.-.+++.|. .-.|..| +|+|....|+|++ ||++.+||-+....+...+.+.+.+.|...
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi-~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSI-AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecce-EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 776 4444555554 1234445 8999988999977 999999999999999998888887777543
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-23 Score=159.54 Aligned_cols=295 Identities=15% Similarity=0.220 Sum_probs=206.6
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC------C--------eeeEEEecccCCceeEEEEe
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------V--------SEKIVYGNIHSCIVNNIRFN 126 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~------~--------~~~~~~~~~h~~~v~~~~~~ 126 (449)
+...++.+|. .+..|.+++|+|.| .+.+.|+...+.+|..... . .......+-|.+.|.|.+|+
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 3344555554 46689999999999 6899999999998875421 1 11122225589999999999
Q ss_pred eCCCCeEEEEeCCCeEEEEeCCCCcee-----eeeecCCCCCCCCCcccceeEEEEecC----CCEEEEEc-CCCeEEEE
Q 013086 127 PTNDGTVYAASSDGTVSCTDLETGLAL-----SLMNVNPNGWHGPRTWRMLYGMDINPE----KGVVLVAD-NFGFLYLV 196 (449)
Q Consensus 127 ~~~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~i~i~ 196 (449)
|. +.++++|+.|.+|++.-.....+. ..+..+. ..|..++|-.+ +..|++++ .|-.|++-
T Consensus 99 ~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---------gtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 99 PC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---------GTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred Cc-cCeEEecCCCceEEEEecccccccccCcceeeeecC---------CceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 99 999999999999999876543322 1222222 23888988654 34555543 45677887
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC-----CCCcEEEEEEcCCC
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNSAYFSPSG 271 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 271 (449)
|...++... ....+.+.|.++--- ++.++++|+.|.+|++||++-......+..-- ..+.|.+++..|.|
T Consensus 169 dc~~g~~~~---a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 169 DCGRGQGFH---ALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred ecCCCCcce---eecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 887776543 334555567665322 67999999999999999998654433332211 23679999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
++|++|-.|....+||++.++.++... .+ ....-++.|+|. ..|+. +++.|..|++-|+.
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~----ph----sadir~vrfsp~---------a~yll---t~syd~~ikltdlq 303 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFH----PH----SADIRCVRFSPG---------AHYLL---TCSYDMKIKLTDLQ 303 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeC----CC----ccceeEEEeCCC---------ceEEE---EecccceEEEeecc
Confidence 999999999999999999888754221 11 111236889997 66776 78999999999985
Q ss_pred Cc---e-EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 352 TG---Q-LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 352 ~~---~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
.. + .+.....|....|. + .|+|..-.+++.+ |.++.+|-+.
T Consensus 304 gdla~el~~~vv~ehkdk~i~-~-rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQ-C-RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEE-E-EecCccceeeeccCcceEEEeccC
Confidence 32 1 22233345434444 4 6999988888888 9999999753
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5e-25 Score=178.62 Aligned_cols=267 Identities=17% Similarity=0.237 Sum_probs=206.4
Q ss_pred CCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeC------cC------------------------
Q 013086 56 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YK------------------------ 105 (449)
Q Consensus 56 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~------~~------------------------ 105 (449)
..|......|+..+.||.+.|+++.|++.+ .++++++.|++..||.. ..
T Consensus 173 ~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 173 RIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred eEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 357777899999999999999999999999 69999999999999973 00
Q ss_pred ---------CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEE
Q 013086 106 ---------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD 176 (449)
Q Consensus 106 ---------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 176 (449)
-..+...+.+|.+.|.+..|... ++.+++++.|.+..+||++++..+..+..+... ++.++
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E---------LtHcs 321 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILTGHDSE---------LTHCS 321 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceeccccCcchh---------ccccc
Confidence 00111223679999999999988 999999999999999999999999888776554 77888
Q ss_pred EecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec
Q 013086 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL 256 (449)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 256 (449)
-+|..+++++++.|.+.++||++..-.. ...+.+|...|+++.|. .+..+++|+.|.+|++||++++.. .+..+
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~s--V~VFQGHtdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNMRs--plATI 395 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQS--VAVFQGHTDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNMRS--PLATI 395 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcce--eeeecccccceeEEEEe--cCCceeecCCCceEEEeeeccccC--cceee
Confidence 8999999999999999999999954333 33445555689999998 466799999999999999998665 45555
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceeccc
Q 013086 257 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISEN 336 (449)
Q Consensus 257 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 336 (449)
...++++.++.+..+..++.--.+..|++||+...++....+ .......-...+++|..+.+...+
T Consensus 396 RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr----tsRqgHrRMV~c~AW~eehp~cnL---------- 461 (481)
T KOG0300|consen 396 RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR----TSRQGHRRMVTCCAWLEEHPACNL---------- 461 (481)
T ss_pred ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc----ccccccceeeeeeeccccCccccc----------
Confidence 677889999999888899988889999999998666533221 111111112236788776543222
Q ss_pred CCCCCCcceEEEECCCc
Q 013086 337 YNGAALHPIDFIDITTG 353 (449)
Q Consensus 337 ~~~~~d~~i~iwd~~~~ 353 (449)
++.+-|..+.-|.+...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 25667888888887653
No 116
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=180.49 Aligned_cols=333 Identities=17% Similarity=0.241 Sum_probs=236.9
Q ss_pred CCCChHHhhhhhcCCCCCCCcCC--CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC------C
Q 013086 35 AGNPVEYVFERQLRPNMTYMKPA--HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------V 106 (449)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~------~ 106 (449)
.-++..++.|+.+++-...++.. ...-...|.+.+.+|.+.|+++.|+.++ ++|++|+.|..++||++.. .
T Consensus 16 ~~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~ 94 (609)
T KOG4227|consen 16 QFKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTP 94 (609)
T ss_pred cceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCC
Confidence 33344556666555544333221 1122456778899999999999999998 7999999999999999854 3
Q ss_pred eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE
Q 013086 107 SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 186 (449)
Q Consensus 107 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 186 (449)
+.+......|...|.+++|... +.++++|..+++|.+.|+++.+.+..+..... ...|+.+..+|..+.+++
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~-------~~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTVIKHDIETKQSIYVANENNN-------RGDVYHMDQHPTDNTLIV 166 (609)
T ss_pred CCceeccCccccceEEEEEccC-CeeEecCCCcceeEeeecccceeeeeecccCc-------ccceeecccCCCCceEEE
Confidence 4445554567889999999988 89999999999999999999888776644322 124999999999999999
Q ss_pred EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-----c-CCCC
Q 013086 187 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-----L-PHKR 260 (449)
Q Consensus 187 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~-~~~~ 260 (449)
.+.++.|.+||.+.......++.....+.....+.|+|..+.+|++.+..+-+-+||++..... .++. + ....
T Consensus 167 ~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENT 245 (609)
T ss_pred EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch-HHhhhccccCcccch
Confidence 9999999999999887665565555666678999999988999999999999999999864431 1111 1 1233
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCC
Q 013086 261 VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA 340 (449)
Q Consensus 261 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (449)
..+++.|+|+|..|++--....-.+||+.+.++.- +...+...+...... ...+.+.+.+-+ .+|+
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V----~k~D~N~~GY~N~~T--------~KS~~F~~D~~v--~tGS 311 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV----LKSDHNPNGYCNIKT--------IKSMTFIDDYTV--ATGS 311 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeeccccee----EeccCCCCcceeeee--------eeeeeeecceee--eccC
Confidence 45788999999999988777777788886654411 001111111110000 111222233321 2799
Q ss_pred CCcceEEEECCCc-----------------------eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 341 ALHPIDFIDITTG-----------------------QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 341 ~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
.+-.|++|.+... +.+..+.+|. ..+..| .|+|...+|++.+ ...++||..
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQV-RF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQV-RFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc-ccccce-eecCCcceEeccchhhheecccc
Confidence 9999999987431 1234455665 566667 8999999999988 999999963
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=196.21 Aligned_cols=220 Identities=20% Similarity=0.198 Sum_probs=180.8
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--eeeEEEecccCCceeEEEE-eeCCCCeEEEEeCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRF-NPTNDGTVYAASSD 139 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~d 139 (449)
..++..++.|.+-|+.++...++ +.|+++|.|-+|++|+.... .+...+ ..|...|.|+++ .++ ..++++|+.|
T Consensus 63 ~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~-~~lvaSgGLD 139 (735)
T KOG0308|consen 63 TPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN-NELVASGGLD 139 (735)
T ss_pred cchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC-ceeEEecCCC
Confidence 44678999999999999999998 57999999999999999876 344444 679999999999 666 8899999999
Q ss_pred CeEEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 140 GTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 140 g~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
+.|.+||+.++. .+..+...............+++++.++.+..+++|+..+.+++||.++.+.... ..+|...|
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---LrGHTdNV 216 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LRGHTDNV 216 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---eeccccce
Confidence 999999999883 3333322211111113344599999999999999999999999999999876543 34555689
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.++..++ ++..+++++.||+|++||+........+ ..|...|.++..+|+-.++++|+.||.|..=|+++.
T Consensus 217 r~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~--~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 217 RVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATY--IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEEEcC-CCCeEeecCCCceEEeeeccccceeeeE--EeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999 9999999999999999999875554443 258888999999999999999999999999999874
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.1e-24 Score=201.92 Aligned_cols=294 Identities=15% Similarity=0.250 Sum_probs=212.0
Q ss_pred cCCceeEEEEeeCCCCeEEEEe--CCCeEEEEeCCCCc-ee--eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 116 HSCIVNNIRFNPTNDGTVYAAS--SDGTVSCTDLETGL-AL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~-~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
+...|.++..+|+ +..++||+ .||.+++|+.+.-- .. .....+..-..-..+...|.|+.|++||.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4556899999999 99999999 89999999875311 00 0000111111112333459999999999999999999
Q ss_pred CeEEEEECCC---CCC------------ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee
Q 013086 191 GFLYLVDART---NSR------------SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD 255 (449)
Q Consensus 191 g~i~i~d~~~---~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 255 (449)
+.|.+|.... +.. -........|...|..++|+| ++.+|++++.|++|.|||.++.+....+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl-- 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVL-- 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeee--
Confidence 9999999873 000 012234556777999999999 9999999999999999999986443322
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecc
Q 013086 256 LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 335 (449)
Q Consensus 256 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 335 (449)
.+|.+.|..+.|.|-|+|||+-+.|++|+||++.+..+.......... ........++.|+|+ |+|++.
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--~~~~T~f~RlSWSPD---------G~~las 236 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--SPLTTFFLRLSWSPD---------GHHLAS 236 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh--CCCcceeeecccCCC---------cCeecc
Confidence 379999999999999999999999999999997664443222211111 112222347899999 777763
Q ss_pred cC-CCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC-----Cc------------EEeecC-CCeEEEEcCCCc
Q 013086 336 NY-NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-----DD------------VLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 336 ~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~~------------~l~s~s-dg~i~iw~~~~~ 396 (449)
.. .-+.-.++.|.+-.+.+.-..+.+|+ .++..+ +|+|. .. .+|+|+ |++|.||.....
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~~~~LvGH~-~p~evv-rFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKVDKDLVGHS-APVEVV-RFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hhhccCCcceeEEEecCCceeeeeeecCC-CceEEE-EeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 21 22345679999998888888999998 577776 88772 11 577789 999999999888
Q ss_pred hhhhhhhc--------------cceEEEEecCCceeeeecCCCC
Q 013086 397 SELVEQKE--------------EMKIIVCGKADKKQKHKFGDES 426 (449)
Q Consensus 397 ~~~~~~~~--------------~~~~~~c~~~~~~~~~~~~~~~ 426 (449)
+++..... ....+.|+-.+.-....|++++
T Consensus 315 RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 315 RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 87776543 2335888888777777776653
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=9.1e-24 Score=191.92 Aligned_cols=302 Identities=19% Similarity=0.292 Sum_probs=235.2
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
.+..|+.-.+.|++++|..||..+|++|+..|.+.+||++..+........|.+.|..+.|.|. ...+++++.|+.+++
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKV 314 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeE
Confidence 3445554469999999999998899999999999999999998888887899999999999998 889999999999988
Q ss_pred EeCCCCce----eeeeecCC--------------------------------------------------CC--------
Q 013086 145 TDLETGLA----LSLMNVNP--------------------------------------------------NG-------- 162 (449)
Q Consensus 145 wd~~~~~~----~~~~~~~~--------------------------------------------------~~-------- 162 (449)
|=.+++.- ++....|. ..
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence 85542211 00000000 00
Q ss_pred ----------------CC---------------------------CCC----cccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 163 ----------------WH---------------------------GPR----TWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 163 ----------------~~---------------------------~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
+. .+. ....+.+++.++.|++.+.|+..|.|-+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 00 000 1135788899999999999999999999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
|++.++-..........+..+|+.++... -++.+++++.+|.+.+||...... +..+.....+.++..+.....++
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l---~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVL---KKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcce---eeeeccCCCcceeeeeehhhhhh
Confidence 99999876655444456777999999988 888999999999999999986443 33334566788899999888999
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 276 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
.+..|-.|+++|+.+.+..+ .+.++. ......|+|+ |++++ +++.|++|++||+.++.
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR---------~f~gh~nritd~~FS~D---------grWli---sasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVR---------EFWGHGNRITDMTFSPD---------GRWLI---SASMDSTIRTWDLPTGT 609 (910)
T ss_pred hhcCceeEEEEEchhhhhhH---------HhhccccceeeeEeCCC---------CcEEE---EeecCCcEEEEeccCcc
Confidence 99999999999998876633 222222 2236889999 99998 89999999999999999
Q ss_pred EEEEEecCccceeceeeecCCCCcEEeecC-C-CeEEEEcCCC
Q 013086 355 LVAEVMDPNITTISPVNKLHPRDDVLASGS-S-RSIFIWRPKE 395 (449)
Q Consensus 355 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d-g~i~iw~~~~ 395 (449)
++..+.-. .....+ .|+|+|.+|||.. | .-|++|--.+
T Consensus 610 lID~~~vd--~~~~sl-s~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 610 LIDGLLVD--SPCTSL-SFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeeeEecC--Ccceee-EECCCCCEEEEEEecCceEEEEEchh
Confidence 99888655 345556 8999999999999 7 7899996543
No 120
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.2e-24 Score=172.97 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=202.9
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
..+|++...|.|++||..++..+..+ .++...++.+.|... ....+.+|+.||+|++||+++......+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 35788888999999999998888877 789999999999874 3788999999999999999987776665443222
Q ss_pred CCcccceeEEEEecCCCEEEEEc----CCCeEEEEECCCCCC-ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVDARTNSR-SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 240 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 240 (449)
.....+++....++.+++|+ .+-.|.+||++..+. +.... ..|...|+++.|+|.++++|++|+.||.|.
T Consensus 117 ---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 117 ---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceEE
Confidence 12377888887888888885 467899999999876 33333 334458999999999999999999999999
Q ss_pred EEEccCCCCC-CceeecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc--cc-eee
Q 013086 241 IWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL--TP-FRA 315 (449)
Q Consensus 241 iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~ 315 (449)
+||+...... ..+..+.+...|.++.|+.++ +.|.+-+..+...+|+++.+................+.. .. +--
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 9999765332 234444788889999999866 458888889999999999887533222111111100000 00 011
Q ss_pred eeccCCCCCceEEEcceecccCCCCCCcceEEEEC---C---CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeE
Q 013086 316 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI---T---TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 388 (449)
Q Consensus 316 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~---~---~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i 388 (449)
..+|... ..+.+ .|+..+...++-+ . .++.+..+.+++...+..+ .|...+.++.||+ ||.+
T Consensus 272 ~~~~~~~-~~~~l---------~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i-~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 272 EHSPGDK-DTCAL---------AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI-LFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred cccCCCc-ceEEE---------eccccCceeEEEeeecccccccCccccccCCcHHHHHHH-hhhcccceeeccCCCceE
Confidence 2223221 11111 1222334433332 2 3456677788787777777 7888899999999 9999
Q ss_pred EEEcC
Q 013086 389 FIWRP 393 (449)
Q Consensus 389 ~iw~~ 393 (449)
.+|..
T Consensus 341 ~~Wk~ 345 (376)
T KOG1188|consen 341 QAWKV 345 (376)
T ss_pred EEEec
Confidence 99986
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=186.64 Aligned_cols=285 Identities=14% Similarity=0.199 Sum_probs=216.2
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee---eEEEe-cccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE---KIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
....|.+-|.++..+... +.++||+. |.|+|||+..... +..+. ..-..-|+++...|+ ++.|++|+.-.+|.
T Consensus 414 ~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivGGeastls 490 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVGGEASTLS 490 (705)
T ss_pred hhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEeccccceee
Confidence 344688889999998877 67999985 7899999975321 11111 113567999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
|||+..........+.... ...++++.+||.+..+++..||.|.|||+.+...+. .+..+...+.||.++
T Consensus 491 iWDLAapTprikaeltssa-------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---qfqGhtDGascIdis 560 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSA-------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS 560 (705)
T ss_pred eeeccCCCcchhhhcCCcc-------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---cccCCCCCceeEEec
Confidence 9999865443333222211 137889999999999999999999999999876654 334455579999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
+ ++..|.+|+.|.+|+-||++.+.. +......+.|.++..+|++.+|++|=.++.+.|......+. ..++.
T Consensus 561 ~-dGtklWTGGlDntvRcWDlregrq---lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yqlhl 631 (705)
T KOG0639|consen 561 K-DGTKLWTGGLDNTVRCWDLREGRQ---LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQLHL 631 (705)
T ss_pred C-CCceeecCCCccceeehhhhhhhh---hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-----eeecc
Confidence 9 999999999999999999987444 33335678899999999999999999999888877643221 11111
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
+ ....+.+.|.+. |++++ +.+.|+-+..|.+.-|..+..... ...|.++ .++.|.++|+||
T Consensus 632 h----eScVLSlKFa~c---------Gkwfv---StGkDnlLnawrtPyGasiFqskE--~SsVlsC-DIS~ddkyIVTG 692 (705)
T KOG0639|consen 632 H----ESCVLSLKFAYC---------GKWFV---STGKDNLLNAWRTPYGASIFQSKE--SSSVLSC-DISFDDKYIVTG 692 (705)
T ss_pred c----ccEEEEEEeccc---------Cceee---ecCchhhhhhccCccccceeeccc--cCcceee-eeccCceEEEec
Confidence 1 112245667666 88888 788999999999998887766544 3567777 899999999999
Q ss_pred C-CCeEEEEcC
Q 013086 384 S-SRSIFIWRP 393 (449)
Q Consensus 384 s-dg~i~iw~~ 393 (449)
+ |....||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 9 988888764
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2e-24 Score=190.62 Aligned_cols=130 Identities=20% Similarity=0.324 Sum_probs=104.6
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE-----EEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-----VYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
..+..|.+|.+.|+.+.|+|-.+.+||||+.|..|+||.+..+.... ....+..-.|.++.|+|....++ ..+.
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil-~s~a 148 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGIL-ASGA 148 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceE-Eecc
Confidence 35678999999999999999777899999999999999998543221 12123445789999999944444 4455
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCC
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 203 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 203 (449)
.|++++||+.+++....+..+... |.++.|+.||.++++++.|..|+|||.+....
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~---------vQSa~WseDG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDK---------VQSADWSEDGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred CceEEEEEcccCceeecccCCchh---------hhccccccCCceEeeecCCcceEEeCCccCCC
Confidence 789999999999988777665543 89999999999999999999999999987543
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-25 Score=199.77 Aligned_cols=202 Identities=23% Similarity=0.403 Sum_probs=165.2
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC---CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
.+..+.|+....++|||++..|.|.+||+.. ...+..+ ..|...++++.|++....+|++|+.||+|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 3556788765567999999999999999987 3333344 77999999999999888999999999999999999988
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
...++....+. |..+.|+|. +..++++...|.+.+||++....... ....|.++|.++.|+| +..+|
T Consensus 168 S~~t~~~nSES---------iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--k~~AH~GpV~c~nwhP-nr~~l 235 (839)
T KOG0269|consen 168 SKSTFRSNSES---------IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--KLTAHNGPVLCLNWHP-NREWL 235 (839)
T ss_pred ccccccccchh---------hhceeeccCCCceEEEecCCceEEEeeccCchhHHH--HhhcccCceEEEeecC-CCcee
Confidence 87777654433 999999994 67899999999999999998776533 4455666999999999 99999
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC-EEEEeeC--CCcEEEEeCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTTSQ--DNRLRIWDSIF 290 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--dg~i~vwd~~~ 290 (449)
|+|+.|+.|+|||+....... +.......+|.++.|-|... +|++++. |-.|+|||++.
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~-~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKP-KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred eecCCCccEEEEeccCCCccc-eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 999999999999998655433 33345678899999999554 5666664 88999999974
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=185.94 Aligned_cols=266 Identities=17% Similarity=0.266 Sum_probs=205.1
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
.|..-|.+++.+.. .++++||+. |.|+|||+....... .. ...........|.++.+.||++.|++|+.-.++.
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~--Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKS--PV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCC--cc--ccccccCcccceeeeEecCCCceEEeccccceee
Confidence 48899999999987 899999984 689999997532110 00 1111122234589999999999999999999999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
|||+......... ......-.+.+++.+| +.++.+++..||.|.|||+++...... ..+|...+.||.++++|..|
T Consensus 491 iWDLAapTprika-eltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dGtkl 566 (705)
T KOG0639|consen 491 IWDLAAPTPRIKA-ELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDGTKL 566 (705)
T ss_pred eeeccCCCcchhh-hcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCCcee
Confidence 9999886654332 2222223678899999 999999999999999999987444322 23899999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
.+|+.|++||.||+++++... .++|... ++.+.+.|. +.+++ .|-..+.+.|.... +.
T Consensus 567 WTGGlDntvRcWDlregrqlq-------qhdF~SQ--IfSLg~cP~---------~dWla---vGMens~vevlh~s-kp 624 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQ-------QHDFSSQ--IFSLGYCPT---------GDWLA---VGMENSNVEVLHTS-KP 624 (705)
T ss_pred ecCCCccceeehhhhhhhhhh-------hhhhhhh--heecccCCC---------cccee---eecccCcEEEEecC-Cc
Confidence 999999999999999887633 3333322 346677777 67776 67888888888764 44
Q ss_pred EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEecC
Q 013086 355 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 414 (449)
Q Consensus 355 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~~~ 414 (449)
..+.+..|. ..|.++ .|++.|+++++.+ |..+..|...-|..++..++.+.++.|.-.
T Consensus 625 ~kyqlhlhe-ScVLSl-KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 625 EKYQLHLHE-SCVLSL-KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred cceeecccc-cEEEEE-EecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 445555555 778888 9999999999988 999999999999999999999999888433
No 125
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.6e-24 Score=179.37 Aligned_cols=253 Identities=17% Similarity=0.205 Sum_probs=192.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee-ec------CCCCCCCC--CcccceeEEEEecCCCEE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM-NV------NPNGWHGP--RTWRMLYGMDINPEKGVV 184 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~------~~~~~~~~--~~~~~i~~~~~~~~~~~l 184 (449)
..|..+|.+++++|+ +.+.++++.+|+|.-|++.+++....+ .- +..+...+ .+...+.+++.++|+++|
T Consensus 139 ~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 569999999999999 999999999999999999998755221 11 11222222 455679999999999999
Q ss_pred EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 185 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 185 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
++|+.|..|.||+.++.+.... +..|...|.+++|-. ....+++++.|+.|++|++........ .++|.+.|.+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~ 291 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKV---FKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLG 291 (479)
T ss_pred EecCCCceEEEecCcccchhhc---ccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHH--HhCCccceee
Confidence 9999999999999999887643 345555899999998 788899999999999999986544333 3589999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcc
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
|....-++.+-+|+.|.++++|++..-.. .+...+ .. .+-+++|-.+ .+|+ +|+.+|.
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~eesq-----lifrg~--~~--sidcv~~In~---------~Hfv----sGSdnG~ 349 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEESQ-----LIFRGG--EG--SIDCVAFIND---------EHFV----SGSDNGS 349 (479)
T ss_pred echhcccceEEeccccceeEEEeccccce-----eeeeCC--CC--CeeeEEEecc---------ccee----eccCCce
Confidence 99888888888888999999999943221 011111 00 1112222222 3444 6999999
Q ss_pred eEEEECCCceEEEEEecCcc-----------ceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 345 IDFIDITTGQLVAEVMDPNI-----------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~-----------~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
|.+|++...+++.+....|. .-++++ +..|...++|+|+ +|.|++|.+.++
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl-a~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL-AVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeee-EecccCceEEecCCCCceEEEEecCC
Confidence 99999999999888764331 145566 7889999999999 999999999888
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.6e-23 Score=181.39 Aligned_cols=298 Identities=15% Similarity=0.189 Sum_probs=205.3
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.|...+.||++.|.+|+..|.| .+|++|+.||+|+||.+.++.++.... ..+.|.+++|+|.....++++.....+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceE
Confidence 4556889999999999999999 699999999999999999999999886 6779999999998555555555555566
Q ss_pred EEeCCCCceee---------eeecCCC------CC-------------CCCCcccceeEEEEecCCCEEEEEcCC---Ce
Q 013086 144 CTDLETGLALS---------LMNVNPN------GW-------------HGPRTWRMLYGMDINPEKGVVLVADNF---GF 192 (449)
Q Consensus 144 iwd~~~~~~~~---------~~~~~~~------~~-------------~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~ 192 (449)
|-+..-|..+. ....... .| ....+...|..+.|+..|.+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 66654442111 0000000 00 001234568899999999999997654 47
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
|.|.++....... .+....+.+.++.|+| ...+|++++ ...|+|||+......+.+ +.....|.+++.+|.|.
T Consensus 548 VliHQLSK~~sQ~---PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL--~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 548 VLIHQLSKRKSQS---PFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKL--LTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEEecccccccC---chhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHH--hcCCeeeeeeeecCCCC
Confidence 8899987765442 2223344799999999 666666665 468999999764443333 24567899999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC-
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT- 351 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~- 351 (449)
.|+.++.|+.+..||+.-... +...+-. .... ...++|++. =.+++ +|+.|+++.|+.-.
T Consensus 621 nli~gs~d~k~~WfDldlssk--Pyk~lr~---H~~a--vr~Va~H~r---------yPLfa---s~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSK--PYKTLRL---HEKA--VRSVAFHKR---------YPLFA---SGSDDGTVIVFHGMV 681 (733)
T ss_pred eEEEecCCCeeEEEEcccCcc--hhHHhhh---hhhh--hhhhhhccc---------cceee---eecCCCcEEEEeeee
Confidence 999999999999999975421 1111100 0000 013455554 12223 68889999988532
Q ss_pred ------Cc--eEEEEEecCccc---eeceeeecCCCCcEEeecC-CCeEEEE
Q 013086 352 ------TG--QLVAEVMDPNIT---TISPVNKLHPRDDVLASGS-SRSIFIW 391 (449)
Q Consensus 352 ------~~--~~~~~~~~~~~~---~v~~v~~~~~~~~~l~s~s-dg~i~iw 391 (449)
+. -++..+.+|... .+..+ .|+|...+|.+++ ||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~-~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDT-IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEee-cccCCCceEEecCCCceEEee
Confidence 11 245566666533 24444 6999999999988 9999998
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.3e-23 Score=187.20 Aligned_cols=306 Identities=16% Similarity=0.230 Sum_probs=224.0
Q ss_pred cccceeeeccCccEEEEEEeCCC--CcEEEEEcCCCcEEEEeCcCCe------------------------eeE------
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYKVS------------------------EKI------ 110 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~--~~~l~t~~~d~~i~vwd~~~~~------------------------~~~------ 110 (449)
...+..+.||.+-|.+++|...+ ..+||++|.|..||||.+.-.. ...
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 35567899999999999998754 3588999999999999874221 000
Q ss_pred EEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 111 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
.+..||...|.++.|+|. +..|++++.|.++.+|...+. -.....++...+ ..........|+|+++.+++-+
T Consensus 261 all~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g----g~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG----GSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred hhhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeeccc----ccccceeeEEEcCCCCEEEEec
Confidence 122589999999999999 888999999999999987654 444444443322 1122378889999999999999
Q ss_pred CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC-------------------
Q 013086 189 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------------------- 249 (449)
Q Consensus 189 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------- 249 (449)
..|..++|.......-.......+|-..|.+++|+| .+.+|++.+.|.+-++|-.-..+.
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 999999998433222222223445556899999999 899999999998888763210000
Q ss_pred --------------------------------------------------------------------------------
Q 013086 250 -------------------------------------------------------------------------------- 249 (449)
Q Consensus 250 -------------------------------------------------------------------------------- 249 (449)
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence
Q ss_pred ---------------------CCceeecCCCCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCCccceec
Q 013086 250 ---------------------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 250 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
...-+.++|...|.+++.+|+++++|+++.. ..|++|+..+....+. +.
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~----L~- 569 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE----LE- 569 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe----ec-
Confidence 0111123688899999999999999999863 4699999877655331 11
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE----EEEEecCccceeceeeecCCCCcE
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL----VAEVMDPNITTISPVNKLHPRDDV 379 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~ 379 (449)
....+...+.|+|+ |+|+. +.+.|.++.+|....... ......|. ..|..+ .|+|++.+
T Consensus 570 ---~HsLTVT~l~FSpd---------g~~LL---svsRDRt~sl~~~~~~~~~e~~fa~~k~Ht-RIIWdc-sW~pde~~ 632 (764)
T KOG1063|consen 570 ---GHSLTVTRLAFSPD---------GRYLL---SVSRDRTVSLYEVQEDIKDEFRFACLKAHT-RIIWDC-SWSPDEKY 632 (764)
T ss_pred ---ccceEEEEEEECCC---------CcEEE---EeecCceEEeeeeecccchhhhhccccccc-eEEEEc-ccCcccce
Confidence 12233457999999 89998 889999999999754322 12233343 778887 99999999
Q ss_pred EeecC-CCeEEEEcCCCc
Q 013086 380 LASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 380 l~s~s-dg~i~iw~~~~~ 396 (449)
++|+| |..|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 99999 999999998887
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.6e-23 Score=165.31 Aligned_cols=272 Identities=13% Similarity=0.158 Sum_probs=183.7
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee---eEEEecccCCceeEEEEee-CCCCeEEEEeCCCeEEEE
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iw 145 (449)
.+|.+-|.++.|.+.| +.+|||+.|++|+|||...... ...-...|.+.|..+.|.+ .-|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 5799999999999999 5799999999999999754332 2222267999999999964 348899999999999999
Q ss_pred eCCCC-------ceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccc------eE--
Q 013086 146 DLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGE------AI-- 208 (449)
Q Consensus 146 d~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~------~~-- 208 (449)
.-... +.+....+. .....|+.+.|.|. |-.+++++.||.++||+.-....+.. +.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~-------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLV-------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred eecccccccccceeEEEEEee-------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 75311 111111111 11234999999995 56889999999999998755322211 10
Q ss_pred --EeecCCCceEEEEEcCC--CCCEEEEEeCC-----CeEEEEEccCCC-CCCceee-cCCCCcEEEEEEcCC----CCE
Q 013086 209 --LIHRKGSKVVGLHCNPI--QPELLLSCGND-----HFARIWDIRRLE-AGSSLCD-LPHKRVVNSAYFSPS----GSK 273 (449)
Q Consensus 209 --~~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~----~~~ 273 (449)
.......+..|+.|+|. ...+|++|+.+ +.++||...... .-..+.. .+|..+|+.++|.|+ -.+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 11123346889999873 35688888765 478888765433 1112222 279999999999994 457
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
||+++.|| |+||.+..-... +... + .. ++.. +.++ .-
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~------i~~e-------------------------e-~~----~~~~-----~~~l-~v 278 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSA------IEEE-------------------------E-VL----APDL-----MTDL-PV 278 (361)
T ss_pred EEEeecCc-EEEEEEeeccch------hhhh-------------------------c-cc----CCCC-----cccc-ce
Confidence 99999999 999998632210 0000 0 00 0000 1111 12
Q ss_pred eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 354 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 354 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
+.+..+.+|. ..+..+ .|+-.|..|++.+ ||.||+|...
T Consensus 279 ~~vs~~~~H~-~~VWrv-~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHN-GEVWRV-RWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeccCCC-CceEEE-EEeeeeeEEeecCCCceeeehhhh
Confidence 3445555565 788888 8999999999988 9999999754
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=174.02 Aligned_cols=213 Identities=21% Similarity=0.339 Sum_probs=168.0
Q ss_pred eeccCccEEEEEEeCCC-CcEEEEEcCCCcEEEEeCcC----------------CeeeEEEecccCCceeEEEEeeCCCC
Q 013086 69 IRYHSRRVTCLEFHPTN-NHILLSGDKKGQVGVWDFYK----------------VSEKIVYGNIHSCIVNNIRFNPTNDG 131 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~-~~~l~t~~~d~~i~vwd~~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~ 131 (449)
.-+|.+.|+.+.-++-+ ..+.++-+..|.|.||++.. .+.+.++ .+|...=.+|+|+|-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccc
Confidence 44688888888888765 34566778899999999843 1233344 689999999999997566
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEe
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 210 (449)
.|++|..-+.|++|...+|... ....++.+ +...|-.++|+|.. ..|++++.||+|+|||++.+.....+ ..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~g--H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~ 298 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK----VDQRPFTG--HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-ST 298 (440)
T ss_pred ccccCccccceEeeeeccCcee----ecCccccc--cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-Ee
Confidence 7889988889999998886543 22233333 23349999999964 68899999999999999998554333 34
Q ss_pred ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeC
Q 013086 211 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 288 (449)
..+.+.|+.|.|+. +..+|++|+.||+++|||+|+.+..+.+..+ .|..+|++|.|+| +...|++++.|..|.+||+
T Consensus 299 kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 66777999999998 6669999999999999999998877666655 6999999999999 5678888999999999999
Q ss_pred CC
Q 013086 289 IF 290 (449)
Q Consensus 289 ~~ 290 (449)
..
T Consensus 378 sv 379 (440)
T KOG0302|consen 378 SV 379 (440)
T ss_pred ec
Confidence 64
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-22 Score=164.17 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=190.8
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
......|.++.|+|. ++.|++++.||++++||+........+... .++.+++|.+ ...+++|+.||.|
T Consensus 10 npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~~~----------~plL~c~F~d-~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFKHG----------APLLDCAFAD-ESTIVTGGLDGQV 77 (323)
T ss_pred CCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhheecC----------CceeeeeccC-CceEEEeccCceE
Confidence 335678999999988 888888899999999999887655555432 2389999987 5679999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
+.+|+.++... ....|...+.++.+++ ....+++|+.|++|++||.+... ..........|.++.. .+..
T Consensus 78 r~~Dln~~~~~----~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v--~g~~ 147 (323)
T KOG1036|consen 78 RRYDLNTGNED----QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKV---VVGTFDQGKKVYCMDV--SGNR 147 (323)
T ss_pred EEEEecCCcce----eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccc---cccccccCceEEEEec--cCCE
Confidence 99999987643 4455666899999998 78889999999999999998622 2222334558888877 5788
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
|++|+.|..+.+||+++...... .....+.-.. -+++..|.. +-|+ .++-+|.|.+=.+...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqt--R~v~~~pn~--------eGy~----~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQT--RCVALVPNG--------EGYV----VSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEeecCceEEEEEcccccchhh----hccccceeEE--EEEEEecCC--------CceE----EEeecceEEEEccCCc
Confidence 99999999999999987654211 0111111111 145566642 2233 3677888777555444
Q ss_pred ----eEEEEEecCc--------cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce---EEEEecCCce
Q 013086 354 ----QLVAEVMDPN--------ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK---IIVCGKADKK 417 (449)
Q Consensus 354 ----~~~~~~~~~~--------~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~---~~~c~~~~~~ 417 (449)
+....+..|. .-+|.++ +|+|-...||||+ ||.|.+||+.+.+.+.++..-.. .+.+...+..
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai-~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAI-AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSL 288 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEecee-EeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCe
Confidence 3344444442 2245566 8999999999999 99999999999998888776532 3445555544
Q ss_pred eeeec
Q 013086 418 QKHKF 422 (449)
Q Consensus 418 ~~~~~ 422 (449)
.....
T Consensus 289 LAia~ 293 (323)
T KOG1036|consen 289 LAIAS 293 (323)
T ss_pred EEEEe
Confidence 44433
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=176.83 Aligned_cols=276 Identities=13% Similarity=0.138 Sum_probs=198.4
Q ss_pred EEcCC-CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEEEEeCCCCceeeeeecCCCCCCCCCc
Q 013086 91 SGDKK-GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRT 168 (449)
Q Consensus 91 t~~~d-~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 168 (449)
+++.| .++.+||+.++.....+..+-...-.++..-. +.+++++.. -..|.+|.+...........-
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~--~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~--------- 80 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN--NEYLLSAQLKRPLLHVWEILKKDQVVQYIVL--------- 80 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc--hhheeeecccCccccccccCchhhhhhhccc---------
Confidence 33444 45999999999888887433133223332222 346666654 457899998765444322211
Q ss_pred ccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC
Q 013086 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 248 (449)
+..+.+++-+|.|.+++.|+..|.+++|.+.++..+... +.|-..|+++.|+. ++.+|++|+.||.|.+|.+...-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH---HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeec
Confidence 223999999999999999999999999999999877533 34444899999999 99999999999999999874321
Q ss_pred ------CCCceeec-CCCCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc
Q 013086 249 ------AGSSLCDL-PHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 319 (449)
Q Consensus 249 ------~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
....+..+ .|.-+|+.+...+. ..+|+++|.|.++++||+..|.++. ...+.... .+++.+|
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-------ti~fp~si--~av~lDp 227 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-------TITFPSSI--KAVALDP 227 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-------EEecCCcc--eeEEEcc
Confidence 22233333 68889999988774 4689999999999999999887632 22222211 2455555
Q ss_pred CCCCCceEEEcceecccCCCCCCcceEEEECCCc----------------eEEEEEecCcc-ceeceeeecCCCCcEEee
Q 013086 320 KDPSESLAVIGRYISENYNGAALHPIDFIDITTG----------------QLVAEVMDPNI-TTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 320 ~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s 382 (449)
. ++.+. .|+.+|.|.+.++... ..+..+.+|.. ..|+++ +++-||.+|++
T Consensus 228 a---------e~~~y---iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL-ais~DgtlLlS 294 (476)
T KOG0646|consen 228 A---------ERVVY---IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL-AISTDGTLLLS 294 (476)
T ss_pred c---------ccEEE---ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE-EEecCccEEEe
Confidence 4 33332 6889999988876432 33455667764 478888 99999999999
Q ss_pred cC-CCeEEEEcCCCchhhhhhh
Q 013086 383 GS-SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 383 ~s-dg~i~iw~~~~~~~~~~~~ 403 (449)
|+ ||.+.|||+.+.+.++++.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHh
Confidence 99 9999999999999998877
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.3e-22 Score=170.27 Aligned_cols=306 Identities=18% Similarity=0.286 Sum_probs=226.3
Q ss_pred CcCCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE---ecccCCceeEEEEeeCCC
Q 013086 54 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY---GNIHSCIVNNIRFNPTND 130 (449)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~~~~~~~~~ 130 (449)
+-.+|..+..........-++.|....|+|.+++++++++. +.+..|+++++...... ......-|.|++|.++ +
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-g 258 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-G 258 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-C
Confidence 44456666666666667778889999999999888888875 78999999887654432 2233467999999996 4
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc------
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS------ 204 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------ 204 (449)
-+++|..+|.|.||+..+.+..+....+..+ |.++....+|.++- |+.|..|..||-.-.+..
T Consensus 259 -dviTgDS~G~i~Iw~~~~~~~~k~~~aH~gg---------v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 259 -DVITGDSGGNILIWSKGTNRISKQVHAHDGG---------VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred -CEEeecCCceEEEEeCCCceEEeEeeecCCc---------eEEEEEecCccEee-cCccceEEeccccccccccccCch
Confidence 5789999999999999887777666555443 99999999888666 999999999983211100
Q ss_pred ------------cce-------------------EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce
Q 013086 205 ------------GEA-------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 205 ------------~~~-------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 253 (449)
..+ .....+......++.+| ..+.+++++.|+.+++|+-. +..
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~~-----k~~ 401 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWNDH-----KLE 401 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccCC-----cee
Confidence 000 01122334677888999 88899999999999999921 222
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEccee
Q 013086 254 CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYI 333 (449)
Q Consensus 254 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 333 (449)
-......++.|+.|+|.| .+|.|...|...+.|.++..++. .+.-+.. ...+.|+|+ |.++
T Consensus 402 wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-------~~~d~~~--ls~v~ysp~---------G~~l 462 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-------IHTDNEQ--LSVVRYSPD---------GAFL 462 (626)
T ss_pred EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-------EEecCCc--eEEEEEcCC---------CCEE
Confidence 222356778999999999 99999999999999998755432 1211212 236789998 8888
Q ss_pred cccCCCCCCcceEEEECCC-ceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhh
Q 013086 334 SENYNGAALHPIDFIDITT-GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 401 (449)
Q Consensus 334 ~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~ 401 (449)
+ .|+.|+.|+||-+.. |.....+..++...++.+ .|++|+++|.+-+ |-.|-.|.....+.+..
T Consensus 463 A---vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL-DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 463 A---VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL-DWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred E---EecCCCeEEEEEECCCCcEEEEeeeecCceeEEe-eecCCCceEEeccCceEEEEEccccCcccce
Confidence 8 799999999999875 444445554555778888 9999999999988 99999996555444433
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-22 Score=177.74 Aligned_cols=289 Identities=17% Similarity=0.254 Sum_probs=209.3
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc-CCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
-+..-..+|.+|+|+.+. +.||.+-.+|.|-||++...........++ ...|.+++|.+ +..|++.+.+|.|.-||
T Consensus 20 f~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWD 96 (691)
T ss_pred EEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEe
Confidence 344556889999999988 569999999999999999876555544443 56799999995 67888999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
+.+++....+..... .|++++.+|.+..+++|+.||.+..++...+...... ......+++.+++|+| +
T Consensus 97 l~~lk~~~~~d~~gg---------~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~-~ 165 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGG---------AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP-T 165 (691)
T ss_pred cccCceeEEecCCCc---------ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-C
Confidence 999998887765443 3999999999999999999998888888776654332 2333446899999999 9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeec------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccc
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 300 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (449)
+..+++|+.||.|++||...+......... ....-|.++.|-.++ .|++|..-|.|.+||...+.+.+.....
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h 244 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH 244 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh
Confidence 999999999999999999876554411111 133457778777554 6899999999999999998875432211
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE---EEEEecCccceeceeeecCCCC
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL---VAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
.. ..++++-+++ +.++. +++.|+.|.-|...+.+. ....+.+|...+.++ +..++
T Consensus 245 ------~a--dVl~Lav~~~---------~d~vf---saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~-av~~~- 302 (691)
T KOG2048|consen 245 ------DA--DVLALAVADN---------EDRVF---SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM-AVIEN- 302 (691)
T ss_pred ------hc--ceeEEEEcCC---------CCeEE---EccCCCceEEEEecCCccceeeeccccCCcccceee-eeecc-
Confidence 11 1123343443 34444 678888888888776643 222233444556655 44444
Q ss_pred cEEeecC-CCeEEEEcCC
Q 013086 378 DVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~ 394 (449)
.|++|+ |..+.+=...
T Consensus 303 -~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 303 -ALISGGRDFTLAICSSR 319 (691)
T ss_pred -eEEecceeeEEEEcccc
Confidence 777777 8777765443
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.4e-23 Score=173.67 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=154.5
Q ss_pred cEEEEEcCCCcEEEEeCcCCe--eeEE------------------EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 87 HILLSGDKKGQVGVWDFYKVS--EKIV------------------YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~--~~~~------------------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
+++|.|+.|..|.|||+.-.. .+.. ...+|+..|.++.|+....+.|++||.|.+|.+||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 699999999999999984211 1110 11368999999999988788999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
+.++++...+..+... |.+++|+|. ..+|++|+.|++|.+.|.+........... .+.|-.++|.|.
T Consensus 273 ~~~g~p~~s~~~~~k~---------Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKK---------VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPH 340 (463)
T ss_pred cCCCCcceehhhcCCc---------eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCC
Confidence 9999999888755443 999999996 568899999999999999974444333232 336999999998
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 290 (449)
....++++..||+|+-+|+|+... .......|.+.|.++++++ ...+|++++.|+.+++|++..
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 889999999999999999998642 2333347999999999998 456789999999999999853
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=7.5e-23 Score=180.72 Aligned_cols=286 Identities=17% Similarity=0.223 Sum_probs=197.1
Q ss_pred EEEeC--CCCcEEEEEcCCCcEEEEeCcCCeee-----EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 79 LEFHP--TNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 79 ~~~~~--~~~~~l~t~~~d~~i~vwd~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
..|++ ...++|+.+..||.|.++|....... ......|...|.++.|.|. ...|++++.|.++++||+.++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccce
Confidence 55543 44578999999999999998764322 2223579999999999996 8899999999999999999988
Q ss_pred eeee--eecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCcc--------------------ce-
Q 013086 152 ALSL--MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSG--------------------EA- 207 (449)
Q Consensus 152 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~--------------------~~- 207 (449)
+... +..+. ..+.+++|.+.+ ..|++|+.||.|.|||++....-. ..
T Consensus 134 l~G~~~~~GH~---------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 134 LVGGRLNLGHT---------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eecceeecccc---------cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 7765 33332 238899999965 578889999999999987543100 00
Q ss_pred ---EEeecCCCc----eEEEEEcCCCCCEEEEEeC-CCeEEEEEccCCCCCCcee------ecCC---CCcEEEEEEcCC
Q 013086 208 ---ILIHRKGSK----VVGLHCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLC------DLPH---KRVVNSAYFSPS 270 (449)
Q Consensus 208 ---~~~~~~~~~----v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~---~~~v~~~~~~~~ 270 (449)
.....+... |+.+.| . |...||+++. |+.|++||++......... ...| .-.+.++.....
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 000111222 444444 4 7888888887 9999999999754322111 1112 335777888888
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc---cceeeeeccCCCCCceEEEcceecccCCCCCCcceEE
Q 013086 271 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL---TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 347 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~i 347 (449)
|.+|.+.+.|+.|++|++.+-... +. ..+.+.. ....-..+|+ +.+++ +|+.|...++
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~s-P~------~~~sg~~~~sf~vks~lSpd---------~~~l~---SgSsd~~ayi 343 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSIS-PV------AEFSGKLNSSFYVKSELSPD---------DCSLL---SGSSDEQAYI 343 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcC-ch------hhccCcccceeeeeeecCCC---------CceEe---ccCCCcceee
Confidence 899999899999999999764431 11 1111111 0123344555 78888 8999999999
Q ss_pred EECCCceEEEEEecCccceeceeeecCCCC-cEEeecC-CCeEEEEcCCCc
Q 013086 348 IDITTGQLVAEVMDPNITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 348 wd~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~s~s-dg~i~iw~~~~~ 396 (449)
|.+.+.+.--.+...+...++.| +|.|.. .-+++++ |-.++||++..+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V-~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTV-RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeecCccCChhhhhCcceEEEEE-eeccccCCCceeeccCcceEEEeccCc
Confidence 99988765544444444778887 776642 2355668 999999998665
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-23 Score=162.52 Aligned_cols=215 Identities=19% Similarity=0.170 Sum_probs=164.8
Q ss_pred ccceeeeccCccEEEEEEeC--CCCcEEEEEcCCCcEEEEeCcCCeeeEE-EecccCCceeEEEEeeCC-CCeEEEEeCC
Q 013086 64 VNCAVIRYHSRRVTCLEFHP--TNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTN-DGTVYAASSD 139 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~--~~~~~l~t~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~~l~s~~~d 139 (449)
..+..|.||+++|..++|.. .| .+||+++.||.|.||.-+++.-... ....|...|++++|.|.+ +-.|+.++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 45688999999999999965 56 7999999999999999888743221 125699999999999875 5678888999
Q ss_pred CeEEEEeCCCC-ce--eeeeecCCCCCCCCCcccceeEEEEecC---C-----------CEEEEEcCCCeEEEEECCCCC
Q 013086 140 GTVSCTDLETG-LA--LSLMNVNPNGWHGPRTWRMLYGMDINPE---K-----------GVVLVADNFGFLYLVDARTNS 202 (449)
Q Consensus 140 g~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~ 202 (449)
|.|.|.+.+.. .. ......+.. .+++++|.|. | +.|++|+.|..|+||+.....
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~---------GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEI---------GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhcccc---------ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 99999998764 11 112222222 3889999885 3 469999999999999998875
Q ss_pred CccceEEeecCCCceEEEEEcCCCC---CEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEee
Q 013086 203 RSGEAILIHRKGSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
-.... .+..|...|+.++|.|..+ ..|++++.||++.||-.+..........+ .....+..+.||+.|+.|++++
T Consensus 197 w~~e~-~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 197 WKLER-TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhh-hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 44332 2455666999999999432 48999999999999988743222222222 3567899999999999999999
Q ss_pred CCCcEEEEeCC
Q 013086 279 QDNRLRIWDSI 289 (449)
Q Consensus 279 ~dg~i~vwd~~ 289 (449)
.|+.+.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999753
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.2e-21 Score=168.63 Aligned_cols=299 Identities=15% Similarity=0.168 Sum_probs=209.5
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-----------e--------------------------
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----------K-------------------------- 109 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-----------~-------------------------- 109 (449)
+....|.+.|.+++...+| . |++|+.|+.|..||-.-.+. +
T Consensus 281 k~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eEeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 3444999999999999999 4 66799999999998311000 0
Q ss_pred --EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE
Q 013086 110 --IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA 187 (449)
Q Consensus 110 --~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 187 (449)
.....+|......++.+|+ .+++++++.|+.+++|+ ..+......... +..++.|+|.| .+++|
T Consensus 359 ~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d----------~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKIIED----------PAECADFHPSG-VVAVG 424 (626)
T ss_pred CceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEEecC----------ceeEeeccCcc-eEEEe
Confidence 0011468889999999999 99999999999999999 445554443332 28899999999 99999
Q ss_pred cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 188 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 188 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
+..|...+.|.++.. +...+....++++++|+| ++.+||.|+.|+.|+||-+.............+.++|+.+.|
T Consensus 425 t~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 425 TATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred eccceEEEEecccce----eEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 999999999999844 335555577999999999 999999999999999999875443222222235589999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCC---CCceEEEcceecccCCCCCCcc
Q 013086 268 SPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP---SESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
++|+++|.+.+.|-.|-.|....-....+.+.+.-.. ......+.+.-..+.. ....+....+++ +|.+.|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t--~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA---~gdd~g~ 574 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWAT--YTCTLGFEVFGGSDGTDINAVARSHCEKLLA---SGDDFGK 574 (626)
T ss_pred cCCCceEEeccCceEEEEEccccCcccceecceeeee--eEEEEEEEEecccCCchHHHhhhhhhhhhhh---ccccCce
Confidence 9999999999999999999543333222211110000 0000001111111110 111112245555 7888899
Q ss_pred eEEEECCCce---EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 345 IDFIDITTGQ---LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 345 i~iwd~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
|++|...--+ ....+.+|. ..+.+| +|.-+...|++.+ |..|..|++
T Consensus 575 v~lf~yPc~s~rA~~he~~ghs-~~vt~V-~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 575 VHLFSYPCSSPRAPSHEYGGHS-SHVTNV-AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEEccccCCCcccceeecccc-ceeEEE-EEeeCCceEEecCCCceEEEEEe
Confidence 9999875333 233444554 788888 8888888888877 999999986
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=168.32 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=166.6
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE--EecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
.....+.++.+|...=++|+|||-..-.|++|.--+.|++|...++.-... -..+|...|..++|+|.....|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 445678899999999999999994322488888888999999988653322 225699999999999998899999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
||+|+|||++.+.....+... .+...|+.+.|+....+|++|+.||.++|||+++.+.-..+..+..|..+|+
T Consensus 279 DgsIrIWDiRs~~~~~~~~~k-------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTK-------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred CceEEEEEecCCCccceeEee-------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 999999999998443333221 1112399999999988999999999999999998776544545566667999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCC----------------CCceeecCCCCcEEEEEEcCC-CCEEEEeeCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEA----------------GSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDN 281 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 281 (449)
++.|+|.+...|++++.|..|.|||+..... .+.+....-...+..+.|+++ ..+|++.+.||
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 9999998888999999999999999864322 011111123456778999984 45777777787
Q ss_pred cEEEEe
Q 013086 282 RLRIWD 287 (449)
Q Consensus 282 ~i~vwd 287 (449)
+.||.
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 44543
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-22 Score=161.93 Aligned_cols=217 Identities=16% Similarity=0.217 Sum_probs=176.1
Q ss_pred cCCCCCCccccceeeeccCccEEEEEEeCCCC-cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE
Q 013086 55 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 55 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
.-.+..+....+..+..|.+.|+++.|.+.-. ..|++|+.||.|.+|+.........+ .+|.+.|+.++.+|. +++.
T Consensus 65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS-~KLA 142 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPS-GKLA 142 (362)
T ss_pred EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCC-CceE
Confidence 34566777778889999999999999988651 26899999999999999998777777 789999999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
++.+.|+.+++||+-.|+.-....+... ...+.|+|.|.+++++..+ .|-+|.+.+....... ..
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~----------at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i----~~ 207 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNK----------ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI----EN 207 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCc----------ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh----hc
Confidence 9999999999999999987666655443 4558999999999888875 5788888776544322 12
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE--cCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF--SPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+..+.++.|. ++..|++|+.|+.|.+||...... .....+|...|..+.+ .|++.+|++++.||.|+|||++..
T Consensus 208 ~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~--~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 208 PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTP--LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cccceeeeec--CCceEEEecCCceEEEeccCCCcc--ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 2357778777 788999999999999999876333 2333489999999884 457889999999999999999765
Q ss_pred C
Q 013086 292 N 292 (449)
Q Consensus 292 ~ 292 (449)
.
T Consensus 284 ~ 284 (362)
T KOG0294|consen 284 T 284 (362)
T ss_pred c
Confidence 4
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=159.41 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=199.6
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC------------eeeEEEecccCCceeEEEEe-------eCCCCeEEEE
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKV------------SEKIVYGNIHSCIVNNIRFN-------PTNDGTVYAA 136 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~------------~~~~~~~~~h~~~v~~~~~~-------~~~~~~l~s~ 136 (449)
...+.|+||| ..|++-+.|..+++|++... .....+.-.....|..-+|- |+ ..++++.
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVS 129 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeec
Confidence 4568999999 46788889999999998421 01111112245678888886 55 7889999
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC-CCCCCccceEE-e---e
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA-RTNSRSGEAIL-I---H 211 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~-~---~ 211 (449)
+.+.-|++||.-+|+....+..-.. ........+++|+|||..|++|.. ..|+++|+ +.+........ . .
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh----~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDH----QDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cccCceeeeeccccccccchhhhhh----HHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999998776643211 111123678999999999988765 79999999 44433221111 1 1
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF 290 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 290 (449)
...+-+.+++|+|.+...++.|+....+-||.-..... .....+|.+.|+.+.|.++|+.|.+|+. |-.|..||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 22456889999998888999999999988888765444 2222389999999999999999999986 77899999975
Q ss_pred CCCCCCCccceecCCCCcccc--ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC-ceEEEEEecCcccee
Q 013086 291 GNLDSPSREIVHSHDFNRHLT--PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-GQLVAEVMDPNITTI 367 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v 367 (449)
-.. +. ..+.++.. ..++.|+-+.. |++++ +|+.+|.|++||+.+ |..+..+..+. ..+
T Consensus 283 ~~~--pv------~~L~rhv~~TNQRI~FDld~~-------~~~La---sG~tdG~V~vwdlk~~gn~~sv~~~~s-d~v 343 (406)
T KOG2919|consen 283 SRD--PV------YALERHVGDTNQRILFDLDPK-------GEILA---SGDTDGSVRVWDLKDLGNEVSVTGNYS-DTV 343 (406)
T ss_pred ccc--hh------hhhhhhccCccceEEEecCCC-------Cceee---ccCCCccEEEEecCCCCCccccccccc-ccc
Confidence 432 11 11111111 11344443322 77777 899999999999998 66566665554 778
Q ss_pred ceeeecCCCCcEEeecCCC
Q 013086 368 SPVNKLHPRDDVLASGSSR 386 (449)
Q Consensus 368 ~~v~~~~~~~~~l~s~sdg 386 (449)
..| +++|--.++|+++..
T Consensus 344 Ngv-slnP~mpilatssGq 361 (406)
T KOG2919|consen 344 NGV-SLNPIMPILATSSGQ 361 (406)
T ss_pred cce-ecCcccceeeeccCc
Confidence 888 899998888888843
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.5e-23 Score=172.62 Aligned_cols=212 Identities=18% Similarity=0.276 Sum_probs=167.5
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
-.+|++.|.+|+|+..-..+||+||.|.+|++||+.++++...+ ..|+..|.++.|+|.....|++|+.|++|.+.|.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 45899999999999988789999999999999999999998888 57999999999999989999999999999999998
Q ss_pred CC-ceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 149 TG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
.. ..-..+.+. ..|-.++|.|.. ..+++++.||.|+-+|+|..... +.....|...|.++++++..
T Consensus 318 ~~~~s~~~wk~~----------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 318 DPSNSGKEWKFD----------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred CccccCceEEec----------cceEEEEecCCCceeEEEecCCceEEeeecCCCCCc--eeEEEeccCCcceEEecCCC
Confidence 42 222222222 238899999965 47778889999999999998633 34556666699999999988
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..++++++.|+.|++|++............-.-+...|.++.|+- -+|+.|+..+.++|||+.+...
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999999999999998754432211110112335677777744 4677788888999999976543
No 142
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=172.48 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=166.9
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG- 150 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~- 150 (449)
-.++|.|++-+|+| .+|+.|+..|.|++|.+.++..+..+ .+|-..|+++.|+.+ +.+|++|+.||.|.+|.+.+-
T Consensus 80 ~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeec
Confidence 35689999999999 68888879999999999999988888 789999999999999 999999999999999987431
Q ss_pred --------ceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 151 --------LALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 151 --------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
+....+. .+.-.|+.+...+. ...+++++.|.++++||+..+..+.. ...+..+.++
T Consensus 157 ~a~~~~~~~p~~~f~---------~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt----i~fp~si~av 223 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFS---------DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT----ITFPSSIKAV 223 (476)
T ss_pred ccccCCCccceeeec---------cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE----EecCCcceeE
Confidence 1111221 22234888877665 46899999999999999999865532 2334479999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCC-------------CCceee-cCCCC--cEEEEEEcCCCCEEEEeeCCCcEE
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEA-------------GSSLCD-LPHKR--VVNSAYFSPSGSKILTTSQDNRLR 284 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~-~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~ 284 (449)
+..| .+..+.+|+.+|.|.+.++.+... ...+.. .+|.. .|+|++++-||.+|++|+.||.++
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 999999999999999988765331 111222 26776 999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q 013086 285 IWDSIFGNLDS 295 (449)
Q Consensus 285 vwd~~~~~~~~ 295 (449)
|||+.+.++++
T Consensus 303 vWdi~S~Q~iR 313 (476)
T KOG0646|consen 303 VWDIYSKQCIR 313 (476)
T ss_pred EEecchHHHHH
Confidence 99998877654
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.4e-21 Score=171.47 Aligned_cols=269 Identities=12% Similarity=0.119 Sum_probs=183.6
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE-EeCCCeEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA-ASSDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg~v~ 143 (449)
.+..+.+|.. +.+++|+|++..++++++.++.|++||..+++....+. .+ ..+..++|+|+ ++.+++ ++.++.|+
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~-g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SG-PDPELFALHPN-GKILYIANEDDNLVT 98 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CC-CCccEEEECCC-CCEEEEEcCCCCeEE
Confidence 4456665543 67899999995455778889999999999877665553 23 33578899999 766654 45689999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-eEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
+||+.+++.+..+.... .+.+++|+|++.+++++..++ .+.+||..+....... .....+..++|
T Consensus 99 ~~d~~~~~~~~~~~~~~----------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~ 164 (300)
T TIGR03866 99 VIDIETRKVLAEIPVGV----------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV----LVDQRPRFAEF 164 (300)
T ss_pred EEECCCCeEEeEeeCCC----------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE----EcCCCccEEEE
Confidence 99999877666554221 167899999999999988765 5677898776543211 12224678999
Q ss_pred cCCCCCEEE-EEeCCCeEEEEEccCCCCCCceeecC---C--CCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCC
Q 013086 223 NPIQPELLL-SCGNDHFARIWDIRRLEAGSSLCDLP---H--KRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 223 ~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~ 295 (449)
+| ++.+|+ ++..++.|++||+.+.+....+.... + ......++|+|++++++++ +.++.+.+||+.+++...
T Consensus 165 s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 165 TA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99 888775 44568999999998765433332110 1 1123568899999986554 456789999998776532
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
. ... ...+..+.|+|+ |+++.. ++..++.|.+||+.+++.+..+..+ .....+ +++|
T Consensus 244 ~---~~~------~~~~~~~~~~~~---------g~~l~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~ 300 (300)
T TIGR03866 244 Y---LLV------GQRVWQLAFTPD---------EKYLLT--TNGVSNDVSVIDVAALKVIKSIKVG--RLPWGV-VVRP 300 (300)
T ss_pred E---EEe------CCCcceEEECCC---------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEcc--ccccee-EeCC
Confidence 1 111 112447789998 555541 2356889999999999999988754 334555 4543
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=9.1e-22 Score=173.95 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=180.6
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE-EecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
++-...|...|..+.|-| |+..|++++.|.++++||+.+...... ...+|...|.+++|.|.+...|++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 456678999999999999 667899999999999999998776654 236899999999999998889999999999999
Q ss_pred EeCCCCceee-------eeecCCC---C--------CCCCCcccceeE---EEEecCCCEEEEEcC-CCeEEEEECCCCC
Q 013086 145 TDLETGLALS-------LMNVNPN---G--------WHGPRTWRMLYG---MDINPEKGVVLVADN-FGFLYLVDARTNS 202 (449)
Q Consensus 145 wd~~~~~~~~-------~~~~~~~---~--------~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 202 (449)
||++-..... ....+.. + .........|.+ +.+..|...||+++. |+.|++||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9997543110 0000000 0 000111122333 455667788888776 9999999999865
Q ss_pred CccceE-----EeecC---CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCC--cEEEEEEcCCCC
Q 013086 203 RSGEAI-----LIHRK---GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR--VVNSAYFSPSGS 272 (449)
Q Consensus 203 ~~~~~~-----~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 272 (449)
...... ..+.+ ...+.++.... .|.+|.+...|+.|+.|++............++.. .-..-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 432211 11111 22467777776 56666666669999999998765544333223221 112234688999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+|++|+.|...++|.+.+-+.-. ..+. ........++|.|......+ +.+.|..++||++.+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~---~~l~----Ght~eVt~V~w~pS~~t~v~-----------TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPP---ALLL----GHTREVTTVRWLPSATTPVA-----------TCSDDFRVKIWRLSN 392 (720)
T ss_pred eEeccCCCcceeeeeecCccCCh---hhhh----CcceEEEEEeeccccCCCce-----------eeccCcceEEEeccC
Confidence 99999999999999997655311 1111 11222347888886432222 358999999999966
Q ss_pred c
Q 013086 353 G 353 (449)
Q Consensus 353 ~ 353 (449)
+
T Consensus 393 ~ 393 (720)
T KOG0321|consen 393 G 393 (720)
T ss_pred c
Confidence 5
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.4e-23 Score=187.93 Aligned_cols=207 Identities=20% Similarity=0.278 Sum_probs=174.9
Q ss_pred CCCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 56 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 56 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
+.|..-..-++..|.+|..+|.++.|+++. .+|++|+.+|+|++||++.......+ .+|...+..+.|+|- +.++++
T Consensus 53 ~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~-~~~~a~ 129 (825)
T KOG0267|consen 53 NLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY-GEFFAS 129 (825)
T ss_pred ccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc-eEEecc
Confidence 344444455566799999999999999997 79999999999999999998888777 699999999999999 999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
|+.|+.+++||++...+...+..+.. .+..+.|+|+|++++.++.|..+++||+..++.... +..+..
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~---------vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e---f~~~e~ 197 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTR---------VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE---FKSHEG 197 (825)
T ss_pred ccccccceehhhhccCceeeecCCcc---------eeEEEeecCCCceeeccCCcceeeeecccccccccc---cccccc
Confidence 99999999999997777777765443 388999999999999999999999999998886643 344566
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
.+..+.|+| ..-+++.|+.|+++++||+++.+...... .....|.+..|+|++..+++|...
T Consensus 198 ~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 198 KVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccCc-hhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeeecCCceeeecCchh
Confidence 899999999 88999999999999999998644322221 346789999999999999888765
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-23 Score=187.54 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=187.4
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
+.+..|...|.++..-..+ +.+++|+.|..+-+|.+.....+..+ .+|..+|.++.|++. ..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~-E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS-ERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc-hhhhcccccCCceeeee
Confidence 3456789999999985556 78999999999999999887777765 789999999999998 88999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
++.++.++++..+... +.+++|+|-+.+.+.|+.|..+.+||++...+.. ....+..-+..+.|+| +
T Consensus 99 leeAk~vrtLtgh~~~---------~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP-~ 165 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLN---------ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSP-D 165 (825)
T ss_pred hhhhhhhhhhhccccC---------cceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecC-C
Confidence 9999988887766543 8899999999999999999999999999765543 2223445688999999 9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 306 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 306 (449)
+.+++.|+.|..++|||+..++....+. .|...+.++.|+|..-++++|+.|+++++||+++.+.+......
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~------ 237 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE------ 237 (825)
T ss_pred CceeeccCCcceeeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc------
Confidence 9999999999999999998755543332 49999999999999999999999999999999876654322211
Q ss_pred CccccceeeeeccC
Q 013086 307 NRHLTPFRAEWDPK 320 (449)
Q Consensus 307 ~~~~~~~~~~~~~~ 320 (449)
...+.+..|+|+
T Consensus 238 --~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 238 --TDGVRSLAFNPD 249 (825)
T ss_pred --cCCceeeeecCC
Confidence 122236677777
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.3e-21 Score=169.88 Aligned_cols=252 Identities=16% Similarity=0.213 Sum_probs=189.1
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee-eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
....|.+++|+.. .+.||.+-.+|.|-+|+++.+-... .+..+.. ..|.+++|+ ++..|++.+.+|.|.
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d--------rsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED--------RSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCC--------CceeeEEEc-cCCeEEeecCCceEE
Confidence 5678999999998 8889999999999999998865433 3333322 349999999 566688888899999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
-||+.+.++.. .....++.|.+++.+| .+..++.|+.||.+..++................+.|.++.|+|++..|
T Consensus 94 EwDl~~lk~~~---~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 94 EWDLHTLKQKY---NIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEecccCceeE---EecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 99999987653 4455566899999999 8899999999998888887653332222112356899999999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
++|+.||.|++||+..+.... .......+... .-.+.|+-. +.-.+..+ +|...|+|.+||...|
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~-----~~~~~~d~l~k~~~~iVWSv~-----~Lrd~tI~----sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLH-----IITMQLDRLSKREPTIVWSVL-----FLRDSTIA----SGDSAGTVTFWDSIFG 235 (691)
T ss_pred EecccCceEEEEEcCCCceEE-----EeeecccccccCCceEEEEEE-----EeecCcEE----EecCCceEEEEcccCc
Confidence 999999999999998876532 11111111111 113455432 11113332 5888899999999999
Q ss_pred eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 354 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 354 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
.+++.+..|. ..+.++ +.++++.++++++ |+.|..+...+..
T Consensus 236 TLiqS~~~h~-adVl~L-av~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 236 TLIQSHSCHD-ADVLAL-AVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred chhhhhhhhh-cceeEE-EEcCCCCeEEEccCCCceEEEEecCCc
Confidence 9999988887 677878 8899999999999 9999888877664
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=1.5e-21 Score=162.99 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=172.7
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe------eeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
-.+.||+++|..++|+|-+++.+|+||.|.+|.||.+.... .....+.+|...|--++|+|...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 46789999999999999888999999999999999986532 233444799999999999999888999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
+|.+|++.+|+.+..+. ++ ..|+++.|+.+|.+|++++.|..|++||.+++..+.+- ..|... ....+
T Consensus 155 ~v~iWnv~tgeali~l~-hp---------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Ra 222 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HP---------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARA 222 (472)
T ss_pred eEEEEeccCCceeeecC-CC---------CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-Cccee
Confidence 99999999999887765 22 23999999999999999999999999999999877544 334333 34445
Q ss_pred EEcCCCCCEEEEEe---CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCC
Q 013086 221 HCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGN 292 (449)
Q Consensus 221 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~ 292 (449)
.|.. ++.++.+|. .+..+-+||..+.+..-.+..+.....|.---|.++.+.+..++ .|+.||-|.+....
T Consensus 223 ifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 223 IFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5655 777666654 36789999999887776666666777788778889888876665 59999999986543
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.4e-21 Score=157.20 Aligned_cols=302 Identities=14% Similarity=0.225 Sum_probs=211.2
Q ss_pred eeeeccCccEEEEEEeC----CCCcEEEEEcCCCcEEEEeCcCCee---eEEEe-cccCCceeEEEEeeC---CCCeEEE
Q 013086 67 AVIRYHSRRVTCLEFHP----TNNHILLSGDKKGQVGVWDFYKVSE---KIVYG-NIHSCIVNNIRFNPT---NDGTVYA 135 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~----~~~~~l~t~~~d~~i~vwd~~~~~~---~~~~~-~~h~~~v~~~~~~~~---~~~~l~s 135 (449)
+....|..+|..++|++ +....+|+.+. ..+.+|....... +.... ..|......++|+-+ ++.++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45667899999999984 33457777774 5788998765432 22222 237778888999865 2457899
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
++.-|.|+|.|+.+++....+..+... |..+.+.|+. +++++++.|..|++|++++...+..+--...|.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~s---------INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGS---------INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCcc---------chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 999999999999999999888776554 9999999975 688999999999999999988765443445566
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC----------------------ceeec----CCCCcEEEEEEc
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS----------------------SLCDL----PHKRVVNSAYFS 268 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------~~~~~----~~~~~v~~~~~~ 268 (449)
..|.++.|++ ++.+|++++.|.+|++|++...+... .+..+ -|...|-|+.|-
T Consensus 182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 7899999999 99999999999999999997322100 01110 256667777773
Q ss_pred CCCCEEEEeeCCCcEEEEeC-CCCCC---CCCC-ccceecCCCCc---cccceeeeeccCCCCCceEEEcceecccCCCC
Q 013086 269 PSGSKILTTSQDNRLRIWDS-IFGNL---DSPS-REIVHSHDFNR---HLTPFRAEWDPKDPSESLAVIGRYISENYNGA 340 (449)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~-~~~~~---~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (449)
|.++++-+-++.|..|.. +-++. ..+. ........+.- ..=.+..+|+|- ++.++ .|.
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---------~~~la---~gn 326 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---------QKMLA---LGN 326 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---------HHHHh---hcc
Confidence 688999999999999987 21111 1011 10011111110 011123455554 66666 789
Q ss_pred CCcceEEEECCCceEE--EEEec-CccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 341 ALHPIDFIDITTGQLV--AEVMD-PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 341 ~d~~i~iwd~~~~~~~--~~~~~-~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..|.|.+||+...... .++.. .....|... +|+.|+.+|+... |+.|.-||..
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~-sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT-SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeee-eecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999876652 22222 222344444 8999999998877 8999999854
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.3e-20 Score=150.17 Aligned_cols=281 Identities=18% Similarity=0.191 Sum_probs=187.6
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce------eeeeecCCCCCCCCCcccceeEEEEec-CCCEEEE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA------LSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLV 186 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 186 (449)
..|.+.|+++...+..++++++|+.||.+.+||++.... +..-...-.......+...|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 348899999999998899999999999999999976431 110000000011122334588889988 5567888
Q ss_pred EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC--CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 187 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 187 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
++-|.++++||..+.+... ....++.|.+-+++|.. ..++++|..+-.|++.|+.++.....+ .+|.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~----~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L--sGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV----DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL--SGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeE----EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee--ccccCceEE
Confidence 8999999999999876542 23334468888888832 358889999999999999987665444 379999999
Q ss_pred EEEcCCCCE-EEEeeCCCcEEEEeCCCC-CCCCC----C--ccceecCCCCccccceeeeeccCCCCCceEEEcceeccc
Q 013086 265 AYFSPSGSK-ILTTSQDNRLRIWDSIFG-NLDSP----S--REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISEN 336 (449)
Q Consensus 265 ~~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 336 (449)
+.|+|...+ |++|+.||.|++||++.- .+... . .................++|..+ |.++.
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd---------~~~l~-- 262 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD---------ARYLA-- 262 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc---------chhhh--
Confidence 999996664 688999999999999754 11110 0 00011111111222345666666 77877
Q ss_pred CCCCCCcceEEEECCCceEEEEEecC---cc---ceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEE
Q 013086 337 YNGAALHPIDFIDITTGQLVAEVMDP---NI---TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKII 409 (449)
Q Consensus 337 ~~~~~d~~i~iwd~~~~~~~~~~~~~---~~---~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~ 409 (449)
+.+.|..+++|+..+|+....-.++ .. -.+. + . +-+...++--- ++.+.++++-+|..+..+..|.+-+
T Consensus 263 -~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~-~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i 338 (397)
T KOG4283|consen 263 -SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-I-Q-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI 338 (397)
T ss_pred -hccCccceEEeecccCcccccccccccccccccceEE-E-e-ecccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence 7788999999999888643221111 00 0111 1 1 22333333333 6888888888888888888888877
Q ss_pred EEecCC
Q 013086 410 VCGKAD 415 (449)
Q Consensus 410 ~c~~~~ 415 (449)
.|....
T Consensus 339 ~c~~~~ 344 (397)
T KOG4283|consen 339 NCAAYR 344 (397)
T ss_pred eEEeec
Confidence 776554
No 151
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=5.5e-21 Score=170.63 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=197.6
Q ss_pred CCCcceeeeccceeeccccccccccCCCCCChHHhhhhhcCCCCCCCcCCCCCCccccceeeeccCccEEE-EEEeCCCC
Q 013086 8 KMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTC-LEFHPTNN 86 (449)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~ 86 (449)
..-||..-+|.-........++++++...++|...-.. ....+.+.+|.+-|.+ ++|-+...
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~-----------------~l~~~~~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ-----------------YLETHAFEGPKGFIANSICYAESDK 71 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCcc-----------------cccceecccCcceeeccceeccccC
Confidence 33455544443333344456777777776666322111 1123567888888887 88876332
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
..+++|+.|.+|.+|.+........+ .+|...|.++....+ +. +++||.|.++++|... ++......|..
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~-~~-~iSgSWD~TakvW~~~--~l~~~l~gH~a----- 141 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGED-GT-LISGSWDSTAKVWRIG--ELVYSLQGHTA----- 141 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCc-Cc-eEecccccceEEecch--hhhcccCCcch-----
Confidence 45899999999999999988888877 799999999997765 54 9999999999999764 44444444433
Q ss_pred CcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 167 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.|+++..-|++ .+++|+.|..|++|.-.+. . . .+..|...|+.+++.+ ...|++++.||.|++|++..
T Consensus 142 ----sVWAv~~l~e~-~~vTgsaDKtIklWk~~~~--l-~--tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 142 ----SVWAVASLPEN-TYVTGSADKTIKLWKGGTL--L-K--TFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred ----heeeeeecCCC-cEEeccCcceeeeccCCch--h-h--hhccchhheeeeEEec--CCCeEeecCCceEEEEeccC
Confidence 38999998888 8999999999999987432 2 2 2344555899999996 44688999999999999942
Q ss_pred CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCce
Q 013086 247 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL 326 (449)
Q Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
+ ..+...+|...|.++...+++..++++++|+++++|+.. ++.+... . +....|+.. +
T Consensus 210 -e--~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----l--------PttsiWsa~-----~ 267 (745)
T KOG0301|consen 210 -E--VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----L--------PTTSIWSAK-----V 267 (745)
T ss_pred -c--eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----c--------CccceEEEE-----E
Confidence 2 244445899999999988888999999999999999975 3221110 0 112334332 1
Q ss_pred EEEcceecccCCCCCCcceEEEECC
Q 013086 327 AVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
...|..+ +|++||.||||...
T Consensus 268 L~NgDIv----vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNGDIV----VGGSDGRVRVFTVD 288 (745)
T ss_pred eeCCCEE----EeccCceEEEEEec
Confidence 1114444 48999999999875
No 152
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=166.77 Aligned_cols=333 Identities=20% Similarity=0.315 Sum_probs=238.6
Q ss_pred HhhhhhcCCCCCCCcCCCCC----CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc
Q 013086 41 YVFERQLRPNMTYMKPAHVI----PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH 116 (449)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h 116 (449)
.+++++++++....+..... ........|..|.+.|..+.|+..| ..|++|+.|..|.+||+........+..+|
T Consensus 106 ~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH 184 (559)
T KOG1334|consen 106 ALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGH 184 (559)
T ss_pred HHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCccccccccc
Confidence 46666666443333222211 1233456789999999999999999 589999999999999999999999998999
Q ss_pred CCceeEEEEeeCC-CCeEEEEeCCCeEEEEeCCCCc-eeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeE
Q 013086 117 SCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFL 193 (449)
Q Consensus 117 ~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 193 (449)
...|....|-|.. ...+++++.||.|++=.+.... ...+..+. .+...+.-++.-|+. ..|.+++.|+.+
T Consensus 185 ~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~-------~h~g~vhklav~p~sp~~f~S~geD~~v 257 (559)
T KOG1334|consen 185 CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA-------PHEGPVHKLAVEPDSPKPFLSCGEDAVV 257 (559)
T ss_pred ccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc-------cccCccceeeecCCCCCcccccccccce
Confidence 9999999999873 5679999999999998765433 22222221 112237888888865 478889999999
Q ss_pred EEEECCCCCCccceEEeecCCC---ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc---eeec-------CCCC
Q 013086 194 YLVDARTNSRSGEAILIHRKGS---KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS---LCDL-------PHKR 260 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-------~~~~ 260 (449)
.-+|+++......+.....+.. ....++..|.+.+.+++|+.|..+++||.+....... +..+ ....
T Consensus 258 ~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 258 FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 9999998776544432222222 4778999997888999999999999999886433211 1111 2345
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccc---------eecCCCCccccceeeeeccCCCCCceEEEcc
Q 013086 261 VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI---------VHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 331 (449)
Q Consensus 261 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 331 (449)
.|++++|+.++.-|+++..|-.|++|.-..+....+.... ...|.....++. .--|-|. ..
T Consensus 338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg-VNFfGPr---------sE 407 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG-VNFFGPR---------SE 407 (559)
T ss_pred cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce-eeeccCc---------cc
Confidence 7999999988888888888999999965444332211111 111211111110 1234554 56
Q ss_pred eecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 332 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 332 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
|+. +|+..|.|.||+-.+++.+..+.+... .|.++ .-+|--.+||+++ |..|+||-..+.
T Consensus 408 yVv---SGSDCGhIFiW~K~t~eii~~MegDr~-VVNCL-EpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 408 YVV---SGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCL-EPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred eEE---ecCccceEEEEecchhHHHHHhhcccc-eEecc-CCCCCCchhhccCCccceeeecCCcc
Confidence 776 899999999999999999998888774 77777 8899999999999 999999987443
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.6e-20 Score=166.31 Aligned_cols=322 Identities=17% Similarity=0.226 Sum_probs=207.0
Q ss_pred cceeeeccCccEEEEEEeCCCC--cEEEEEcCCCcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~--~~l~t~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
-+..+.||..+|+|+.|-|+.+ .++++|+.|+.|.+|.++........ ..+|... +++++.. .........|++
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~-~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVAR-SSVMTCKAADGT 122 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEee-eeEEEeeccCce
Confidence 4578999999999999998872 26899999999999999844333222 2445544 4455443 223333367999
Q ss_pred EEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCC-C-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 142 VSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEK-G-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 142 v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
+.+||.+..+ +...+.+.... ....|+++.++. . .++.|+.+..|.++.-... .........+|...|
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~-------~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKE-------AIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAELEGHTDWI 194 (764)
T ss_pred EEEeecCCCceeeehheehhhhh-------HhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEeeccchhh
Confidence 9999996555 22223222111 124566666633 3 4455667777888776643 223344566777799
Q ss_pred EEEEEcCCC--CCEEEEEeCCCeEEEEEccCCCC---------------------CCcee--------ecCCCCcEEEEE
Q 013086 218 VGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEA---------------------GSSLC--------DLPHKRVVNSAY 266 (449)
Q Consensus 218 ~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---------------------~~~~~--------~~~~~~~v~~~~ 266 (449)
.+++|.... .-+|++++.|..|+||.+.-... ...+. ..+|...|+++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 999998733 34889999999999998753320 00111 127999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc-cccceeeeeccCCCCCceEEEcceecccCCCCCCcce
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 345 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i 345 (449)
|+|.+..|++++.|.++.+|...+..-+- ..........+ ....+...|+|+. ..+. +.+..|-.
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiW--v~~vRlGe~gg~a~GF~g~lw~~n~---------~~ii---~~g~~Gg~ 340 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIW--VDVVRLGEVGGSAGGFWGGLWSPNS---------NVII---AHGRTGGF 340 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceE--EEEEEeecccccccceeeEEEcCCC---------CEEE---EecccCcE
Confidence 99999999999999999999876432110 01111111111 2234678999983 3332 24455669
Q ss_pred EEEECCCceE--EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC----CchhhhhhhccceEEEEe
Q 013086 346 DFIDITTGQL--VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK----EKSELVEQKEEMKIIVCG 412 (449)
Q Consensus 346 ~iwd~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~----~~~~~~~~~~~~~~~~c~ 412 (449)
++|-..+... ......+|...+..+ +|+|.|.+|.+.+ |.+-|++-.- +--++.+.+-|+..+.|-
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv-~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDV-DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred EEEeccCccceeeccccccccccceee-eecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 9998433221 222335556899999 9999999999999 9999887543 112444445555555553
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.3e-21 Score=156.43 Aligned_cols=252 Identities=14% Similarity=0.102 Sum_probs=177.1
Q ss_pred eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC
Q 013086 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 199 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 199 (449)
..++.|++. |.+|++|..||.|.|||+.+...-+.+..|.. +|.+++|+++|+.|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~---------pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR---------PITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhcccc---------ceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 789999999 99999999999999999998876666655443 39999999999999999999999999999
Q ss_pred CCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCcEEEEEEcCCCCEEEE
Q 013086 200 TNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~ 276 (449)
.+....++ ...++|....|+|.+.+.+++.-.+..-.+-++..... ..+..- .......+..|.+.|+++++
T Consensus 96 ~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 96 KGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred CCCceeEE----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEE
Confidence 99865432 33448999999997777766666666566666543111 111111 11122334468999999999
Q ss_pred eeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce--
Q 013086 277 TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-- 354 (449)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~-- 354 (449)
|...|.+.++|..+.+++...+... ...+-.+.++- .|++++ .-+.|..|+.|+++.-.
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits-------~~~IK~I~~s~---------~g~~li---iNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITS-------VQAIKQIIVSR---------KGRFLI---INTSDRVIRTYEISDIDDE 231 (405)
T ss_pred ecCcceEEEEecchheeeeeeeech-------heeeeEEEEec---------cCcEEE---EecCCceEEEEehhhhccc
Confidence 9999999999998877644222111 00011222332 277776 57889999999986211
Q ss_pred -------EEEEEecC-ccceeceeeecCCCCcEEeecC--CCeEEEEcCCCchhhhhhhccc
Q 013086 355 -------LVAEVMDP-NITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQKEEM 406 (449)
Q Consensus 355 -------~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~s--dg~i~iw~~~~~~~~~~~~~~~ 406 (449)
+.+.++.- +......+ .|+.+|.|++.|+ -..++||.-..|.+++.+.+..
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~c-cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKC-CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhhe-eecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 11222111 11223344 7999999999988 5899999999998887776654
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.3e-21 Score=162.04 Aligned_cols=265 Identities=13% Similarity=0.185 Sum_probs=195.5
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCe
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGF 192 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~ 192 (449)
..+.|+++.|+|. ...+++++.|++++||.+... ..+..+.+..- +|.+..|.|+|. .+++++....
T Consensus 212 s~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 212 SHGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CcCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEecccceE
Confidence 3467999999999 999999999999999988643 33333333322 389999999999 8999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
++.||+.+.+..............+....++| ++++|+..+..|.|.+....+++.... +...+.|..++|+.+++
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITS---FKIEGVVSDFTFSSDSK 357 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhe---eeeccEEeeEEEecCCc
Confidence 99999988765421111111122577888999 999999999999999999887555443 34678899999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
.|++++.+|.|.+||++...++. ...-.+.+....++-+++ |.|++ +|+..|.|.|||..+
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~-------rf~D~G~v~gts~~~S~n---------g~ylA---~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLH-------RFVDDGSVHGTSLCISLN---------GSYLA---TGSDSGIVNIYDGNS 418 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEE-------EEeecCccceeeeeecCC---------CceEE---eccCcceEEEeccch
Confidence 99999999999999998765421 111222222234455555 78888 899999999999643
Q ss_pred ------ceEEEEEecCccceeceeeecCCCCcEEeecC---CCeEEEEcCCCchhhhhhhccce---EEEEecCC
Q 013086 353 ------GQLVAEVMDPNITTISPVNKLHPRDDVLASGS---SRSIFIWRPKEKSELVEQKEEMK---IIVCGKAD 415 (449)
Q Consensus 353 ------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s---dg~i~iw~~~~~~~~~~~~~~~~---~~~c~~~~ 415 (449)
.+++..+..-. ..|+.+ .|++|.++||.+| +..+|+-.+.+......+..... .+.|-...
T Consensus 419 ~~~s~~PkPik~~dNLt-t~Itsl-~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 419 CFASTNPKPIKTVDNLT-TAITSL-QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred hhccCCCCchhhhhhhh-eeeeee-eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 45555554443 677777 9999999999988 58899999888776655544332 25554443
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.8e-21 Score=183.36 Aligned_cols=287 Identities=19% Similarity=0.275 Sum_probs=201.9
Q ss_pred EEEEeCCCCcEEEEEc----------CCCcEEEEeCcCCe------eeEEEecccCCceeEEEEeeCCCC---eEEEEeC
Q 013086 78 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDG---TVYAASS 138 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~----------~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~---~l~s~~~ 138 (449)
.++|+|.+..++++|. .+.++-||.+.... ....+ ......+.++|.+.+.. +|+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence 4789998855676663 24456666554321 12222 24567899999988333 4888899
Q ss_pred CCeEEEEeCCCC---ce---eeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 139 DGTVSCTDLETG---LA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 139 dg~v~iwd~~~~---~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
||.|.+||...- .. +..... +...|..+.|++.+. +|++|+.+|.|.|||+...+.....- ..
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~---------h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~ 158 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSK---------HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQ 158 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcc---------cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CC
Confidence 999999998652 21 122222 223499999999765 99999999999999999865443221 22
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEeeCCC---cEEEEe
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDN---RLRIWD 287 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~vwd 287 (449)
.....|.+++|+.....+|++++.+|.+.|||++..+..-.+........+..++|+|+. ..|++++.|. .|.+||
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 234579999999867789999999999999999976554334333334568899999954 5677776653 699999
Q ss_pred CCCCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccce
Q 013086 288 SIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 366 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 366 (449)
++.-.. +.+ .+.+| ..++.+.|.+.+ .+++. +.+.|++|.+|+.++|+.+..+.... ..
T Consensus 239 lR~ass--P~k------~~~~H~~GilslsWc~~D--------~~lll---SsgkD~~ii~wN~~tgEvl~~~p~~~-nW 298 (1049)
T KOG0307|consen 239 LRFASS--PLK------ILEGHQRGILSLSWCPQD--------PRLLL---SSGKDNRIICWNPNTGEVLGELPAQG-NW 298 (1049)
T ss_pred ccccCC--chh------hhcccccceeeeccCCCC--------chhhh---cccCCCCeeEecCCCceEeeecCCCC-cc
Confidence 975332 111 11222 224588999985 35555 78899999999999999999997744 56
Q ss_pred eceeeecCCCCc-EEeecC-CCeEEEEcCCCch
Q 013086 367 ISPVNKLHPRDD-VLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 367 v~~v~~~~~~~~-~l~s~s-dg~i~iw~~~~~~ 397 (449)
+..+ .|.|... .++.++ ||.|.|+.+..+.
T Consensus 299 ~fdv-~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDV-QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeee-eecCCCcchhhhheeccceeeeeeecCC
Confidence 6777 8999877 666677 9999999987654
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.2e-20 Score=149.79 Aligned_cols=272 Identities=14% Similarity=0.189 Sum_probs=179.3
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee--eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
+++|...|++++|+.+ +..|++++.|++|++|+++.-... +.++.. ......+.+.|+||-+.+++....
T Consensus 82 LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-------ve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQN-------VEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcc-------ccCCCceEEEECCCcceEEEEEcc
Confidence 3789999999999999 999999999999999999763211 111111 011127889999998877766544
Q ss_pred -CeEEEEECCCCCC---ccceEE-----e-ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCC
Q 013086 191 -GFLYLVDARTNSR---SGEAIL-----I-HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK 259 (449)
Q Consensus 191 -g~i~i~d~~~~~~---~~~~~~-----~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 259 (449)
..+++|.+...+. ...... + ..+...+..+-... ++.+|++++.|..|.+|+++ ++.+... ...
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk----Gq~L~~idtnq 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK----GQLLQSIDTNQ 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC----Cceeeeecccc
Confidence 5899997654221 111111 1 12334566666665 78899999999999999997 3344333 233
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccc-eeeeeccCCCCCceEEEcceecccCC
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
..-+..+.||+|+++++++.---+++|.+--++- ....+......+.+|... ...+|+++ ...++ +
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~v---t 295 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAV---T 295 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhhhhhhheeccchhheeeeeeCCC---------cceeE---E
Confidence 3456678999999999999999999999854332 112222333344455443 46788887 33333 5
Q ss_pred CCCCcceEEEECCC-------ceEEEEEe---cCccceeceeeecCCCCcEEeecCCCeEEEEcCCCchhhhhhh-ccce
Q 013086 339 GAALHPIDFIDITT-------GQLVAEVM---DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQK-EEMK 407 (449)
Q Consensus 339 ~~~d~~i~iwd~~~-------~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~~~~~~~-~~~~ 407 (449)
.+.||+++|||+.- .+.+.... .........+ +.+|.|+.||.+....|.++..++|+....++ .|+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL-~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~ 374 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL-ELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST 374 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE-EeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcC
Confidence 78999999999842 12222221 1111223355 89999999999887789999999987665543 3554
Q ss_pred EEEE
Q 013086 408 IIVC 411 (449)
Q Consensus 408 ~~~c 411 (449)
-|.|
T Consensus 375 ~Is~ 378 (420)
T KOG2096|consen 375 TISS 378 (420)
T ss_pred ceee
Confidence 4444
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=3.3e-20 Score=148.89 Aligned_cols=284 Identities=17% Similarity=0.230 Sum_probs=192.0
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCC-------CcEEEEeCcCCe---------eeEEEecccCCceeEEEEeeC
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKK-------GQVGVWDFYKVS---------EKIVYGNIHSCIVNNIRFNPT 128 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d-------~~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~~~~~ 128 (449)
..++|..|.+.|..++-+|-.+++|+|+..+ -.+.||.+.... ++..+...+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3467888999999999999988888887652 247899986532 223333345668999999998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCce-eeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEEcCCCeEEEEECCCCCCcc
Q 013086 129 NDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSG 205 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 205 (449)
+..+++-. |..|.+|++..+.. ...+...... . .....++-+|+| +++.++ ...++++..||+++.....
T Consensus 135 -s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e--~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 135 -SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--E--MRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred -CCeeEEec-cCceEEEEcccCcchheeecccccc--c--ccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhc
Confidence 87877766 88999999988766 3333222111 1 122377788998 455444 4567899999999987765
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcC-CCCEEEEeeCCCcE
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRL 283 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i 283 (449)
.+...|.+ .+..+.|+|+...+|++|+.||.|+|||.|..+. .+..+ +|...|.++.|+| ..+++++++.|..|
T Consensus 208 sI~dAHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 208 SIEDAHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred chhhhhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 55445544 7999999997777999999999999999997544 33333 7999999999999 56788999999999
Q ss_pred EEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc
Q 013086 284 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 363 (449)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 363 (449)
.+|....-.... .+.+.-+... ....+..=++=-+.+| .+.++..|.
T Consensus 284 ~Lsca~svSSE~------------------qi~~~~dese--------------~e~~dseer~kpL~dg-~l~tydehE 330 (370)
T KOG1007|consen 284 NLSCASSVSSEQ------------------QIEFEDDESE--------------SEDEDSEERVKPLQDG-QLETYDEHE 330 (370)
T ss_pred EEEecccccccc------------------cccccccccc--------------CcchhhHHhccccccc-ccccccccc
Confidence 999874322110 0011111000 0000111111111122 244555565
Q ss_pred cceeceeeecCCCCc-EEeecC-CCeEEEEcCC
Q 013086 364 ITTISPVNKLHPRDD-VLASGS-SRSIFIWRPK 394 (449)
Q Consensus 364 ~~~v~~v~~~~~~~~-~l~s~s-dg~i~iw~~~ 394 (449)
..++++ +|+.-.. ++|+-+ ||.+.|=++.
T Consensus 331 -DSVY~~-aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 331 -DSVYAL-AWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred -cceEEE-eeccCCCeeEEEeccCceEEeecCC
Confidence 889988 8877554 667778 9999887654
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2e-20 Score=156.97 Aligned_cols=302 Identities=14% Similarity=0.168 Sum_probs=202.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-----e---EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----K---IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-----~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
..+|.++.|.++....|+||+.|..|++|.+..... . ...+..|...|+++.|+|+ +++|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 457999999988754899999999999998864321 1 1122579999999999999 999999999999999
Q ss_pred EeCCCCc----------------eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 145 TDLETGL----------------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 145 wd~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
|-...-. ....... +...++.++|+|++.++++++.|..+++||+..+....
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~--- 159 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRG---------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA--- 159 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecc---------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---
Confidence 9765200 0111111 22348999999999999999999999999999988653
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee------------------ec---CCCCcEEEEEE
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC------------------DL---PHKRVVNSAYF 267 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~---~~~~~v~~~~~ 267 (449)
....|...+..++|.| .++++++-+.|...+.+.+...+...... .+ ....-...++|
T Consensus 160 ~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 3445555899999999 89999999999877777765433222111 11 01122346789
Q ss_pred cCCCCEEEEeeC----CCcE-----EEEeCCCCCCCCCCccceecCCCCccccceeeeeccC-------CCCC-ceEEEc
Q 013086 268 SPSGSKILTTSQ----DNRL-----RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK-------DPSE-SLAVIG 330 (449)
Q Consensus 268 ~~~~~~l~~~~~----dg~i-----~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~g 330 (449)
+|+|.+|++.+. ++.+ ++|+-. .+..|. .+...... ..+.+.++|- .... .+...-
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l~rP~---~~lp~~~k--~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DLKRPA---ARLPSPKK--PALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccc--cccCce---eecCCCCc--ceEEEEeeeeEEEecccccccccccccc
Confidence 999999988642 2222 333221 111111 11111110 0122233221 1110 111111
Q ss_pred ceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 331 RYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 331 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
+++. .-...+.|+|||.++-.++.....-|...++.+ +|++||.+|+..| ||...+-.++..++-
T Consensus 312 rlvf---aiAt~~svyvydtq~~~P~~~v~nihy~~iTDi-aws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 312 RLVF---AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDI-AWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEE---EEeecceEEEeccccccceEEEeeeeeeeecce-eecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 1111 223456799999999999999888888999999 9999999999999 999888877776644
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=158.88 Aligned_cols=266 Identities=15% Similarity=0.177 Sum_probs=184.8
Q ss_pred cccCCceeEEEEeeCCC-CeEEEEeCCCeEEEEeCCCCce--eeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcC
Q 013086 114 NIHSCIVNNIRFNPTND-GTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADN 189 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 189 (449)
..+.++|++++|+|... +++++|..-|.|-+||+.+.+. -..+.+ ..+...|.++.|+|.. ..+++.+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-------~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-------TPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-------ccCCccccceEecCCChhheeeecc
Confidence 45889999999999855 6888899999999999963221 111111 1122349999999954 68999999
Q ss_pred CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC
Q 013086 190 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 269 (449)
Q Consensus 190 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (449)
||+|++-|+....... ++........+..+.|+. +...++.+..=|.+.+||+++........ .-|...|.+|+++|
T Consensus 256 DGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNP 332 (498)
T ss_pred CceeeeeeecchhhHH-HhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhh-hhhhcccceeecCC
Confidence 9999999998765432 222222333577788888 66666666666799999999865522221 13777999999999
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 270 -SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 270 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
...+||+++.|++++|||++.-..... ..+ .........-.+.|+|.+. . ++ +-..|+.|+||
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~l--st~~HrrsV~sAyFSPs~g--------t-l~---TT~~D~~IRv~ 396 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKAS--PFL--STLPHRRSVNSAYFSPSGG--------T-LL---TTCQDNEIRVF 396 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCC--cce--ecccccceeeeeEEcCCCC--------c-eE---eeccCCceEEe
Confidence 566789999999999999986443221 112 2222222334788999863 3 22 46789999999
Q ss_pred ECC----CceEEEEEecCc-----cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 349 DIT----TGQLVAEVMDPN-----ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 349 d~~----~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
|.. .-.....+...+ ...+.+ +|.|+..++++|. -..|-|+|...++.+..+..+..
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA--~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKA--AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhh--eeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 983 333444443222 223333 5999999999999 78899999999887777665554
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2e-20 Score=148.17 Aligned_cols=294 Identities=16% Similarity=0.154 Sum_probs=198.5
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
..+|++|.+.|+++.|..++ + |.+|...|.|++|++.+......+.-.|...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~-r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANE-R-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccch-h-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEE
Confidence 46788999999999999887 4 8899999999999999988777774468889999998884 578889999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEE-----ecCCC----EEEEEcCCC-eEEEEECCCCCCccce-EEeecCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDI-----NPEKG----VVLVADNFG-FLYLVDARTNSRSGEA-ILIHRKG 214 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~-~~~~~~~ 214 (449)
++.-+..+..-... +.++.| ++.++ .++.-++.. .+.+-|.......... -......
T Consensus 83 ~ia~s~~i~i~Si~------------~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 83 TIAYSAFISIHSIV------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred EccCcceEEEeeee------------ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 99876544332211 222222 22211 111111110 1122222111110000 0011223
Q ss_pred CceEEEEEcCCCC--CEEEEEeCCCeEEEEEccCCCCCC--------ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEE
Q 013086 215 SKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGS--------SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLR 284 (449)
Q Consensus 215 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 284 (449)
+.+++..+...++ -++++|.++|.+.+||+.++...- ......|..+|.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3566766543233 367788899999999998752211 111225889999999998666677888888999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 364 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 364 (449)
.|++.......+.+.. ...-+|......+..+++.++ +++.|+.||||+.++..++..+..|.
T Consensus 231 ~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~KIlA---TAGWD~RiRVyswrtl~pLAVLkyHs- 293 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDGKILA---TAGWDHRIRVYSWRTLNPLAVLKYHS- 293 (323)
T ss_pred eeeeccccCcccccce-------------EEecCCCccceEEccCCcEEe---ecccCCcEEEEEeccCCchhhhhhhh-
Confidence 9998643221111111 112233333444445588888 89999999999999999999999888
Q ss_pred ceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 365 TTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 365 ~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
..+.++ +|+|+..++|+++ |+.|.+|++
T Consensus 294 agvn~v-Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAV-AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEE-EeCCCCchhhhccCCceEEeeec
Confidence 889999 9999999999999 999999986
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=176.29 Aligned_cols=290 Identities=17% Similarity=0.217 Sum_probs=215.7
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
....++.|.||..+|+|+.|...| +++++|+.|..++||..++..+.... .||.+.|+.++.+.+ +.++++++.|..
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~-n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN-NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh-hhhhhhcccCce
Confidence 356678899999999999999999 79999999999999999999999988 799999999999988 889999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc--ceEEeecCCCceEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG--EAILIHRKGSKVVG 219 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~ 219 (449)
|++|.+.++..+..+..+... |++++|+|-. +.+.||++++||.+-..... .... .....-+.+
T Consensus 256 IrvWrl~~~~pvsvLrghtga---------vtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~~~~~~~~s 321 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGA---------VTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-FTEKDLVDS 321 (1113)
T ss_pred EEEEecCCCchHHHHhccccc---------eeeeccCccc----cCCCCCceEeccccccccccCCCCCC-cccccceee
Confidence 999999999999888776654 9999999954 78899999999988211110 0101 112234666
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+.|.. .+.-+++++.|+.-..|.+..... +...+.-+.++.+ ..+.+++-.+-.+.+|++.+|.+..
T Consensus 322 ~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H--- 389 (1113)
T KOG0644|consen 322 ILFEN-NGDRFLTGSRDGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH--- 389 (1113)
T ss_pred eeccc-cccccccccCCcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh---
Confidence 66666 778899999999998887653222 2222222222222 2456677778899999999887632
Q ss_pred cceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 299 EIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
...++.. .+.+.++|..+...+ +++.||...|||+-.|..++.+.-++...+.+ +||++|
T Consensus 390 ------~l~ghsd~~yvLd~Hpfn~ri~m-----------sag~dgst~iwdi~eg~pik~y~~gh~kl~d~--kFSqdg 450 (1113)
T KOG0644|consen 390 ------NLMGHSDEVYVLDVHPFNPRIAM-----------SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG--KFSQDG 450 (1113)
T ss_pred ------hhcccccceeeeeecCCCcHhhh-----------hccCCCceEeeecccCCcceeeecccceeecc--ccCCCC
Confidence 2222221 134566666432222 57889999999999999888877665444444 799999
Q ss_pred cEEeecC-CCeEEEEcCCCchhh
Q 013086 378 DVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
..++... -|.++|.....++..
T Consensus 451 ts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ceEecCCCCCceEEeccCCCccc
Confidence 9998888 499999886665543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6e-20 Score=157.96 Aligned_cols=267 Identities=14% Similarity=0.163 Sum_probs=190.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
.|.++.|+....-.+++.+.|..|++|.-.... .+..........-.|++.... ..++++|+..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHh
Confidence 489999988762223344557789999755431 111111222334455555555 679999999999999999965555
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
+.+..+. ..|+++.++....+||+++..|.|.+..+.++.....+ .+..+..+.-+.|+|....+|.++
T Consensus 115 r~lkdh~---------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 115 RFLKDHQ---------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred hhccCCc---------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeEEEeecccccceeeEee
Confidence 5554433 23999999999999999999999999999987765432 233334677899999677788899
Q ss_pred eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccc
Q 013086 234 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP 312 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (449)
+.+|.|.+||+.......... ..|..+...|+|+| +..+|++.+.|..|.+||....+... .+...+.+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~y~~Pl------ 253 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLTYSHPL------ 253 (673)
T ss_pred ccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEEEeecccccccc---eeeecCCc------
Confidence 999999999998654433221 26999999999999 66788899999999999998654421 22222222
Q ss_pred eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce-EEEEEecCccceeceeeecCCCC
Q 013086 313 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
..++|.++ |.+++ .|+..|.|..||++..+ ++..+..|. ..|+++ +|-|.-
T Consensus 254 stvaf~~~---------G~~L~---aG~s~G~~i~YD~R~~k~Pv~v~sah~-~sVt~v-afq~s~ 305 (673)
T KOG4378|consen 254 STVAFSEC---------GTYLC---AGNSKGELIAYDMRSTKAPVAVRSAHD-ASVTRV-AFQPSP 305 (673)
T ss_pred ceeeecCC---------ceEEE---eecCCceEEEEecccCCCCceEeeecc-cceeEE-Eeeecc
Confidence 25778877 88887 79999999999998654 555555555 678888 786653
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=5.2e-20 Score=153.93 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=161.4
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|.++|..++|+|-+.+.|++||.|.+|.||.+..+.....+..
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------------------------------- 122 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------------------------------- 122 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-----------------------------------
Confidence 689999999999999889999999999999999987654433210
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
.......|...|.-++|+|.-.+.|++++.|..|.+||+.+++. +..+.|...|.++.|+.+|.+
T Consensus 123 ------------pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 123 ------------PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLDHPDMVYSMSFNRDGSL 187 (472)
T ss_pred ------------ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eeecCCCCeEEEEEeccCCce
Confidence 01122334447999999998889999999999999999987554 334569999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
|++.+.|..|+|||.++++.+... .......+.++.|-.+ |.++...++...+.++-+||..+-
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~-------~~heG~k~~Raifl~~---------g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEG-------VAHEGAKPARAIFLAS---------GKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeec-------ccccCCCcceeEEecc---------CceeeeccccccccceeccCcccc
Confidence 999999999999999999875422 1111112234555544 566666678889999999998665
Q ss_pred eE---EEEEecCccceeceeeecCCCCcEEeecC--CCeEEEEcCCCch
Q 013086 354 QL---VAEVMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKS 397 (449)
Q Consensus 354 ~~---~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--dg~i~iw~~~~~~ 397 (449)
+. ...+...+ +.+.. .|.+|..++..++ |+.||.|.+....
T Consensus 252 ~eP~~~~elDtSn-Gvl~P--FyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDTSN-GVLLP--FYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEeccCC-ceEEe--eecCCCCEEEEEecCCcceEEEEecCCC
Confidence 43 33343333 44444 5899999888766 9999999876544
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=161.95 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=206.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.|..++|-|||.++++.+ +..+.+||...+.....+ ++|...|++++|+.+ +..+++|+.|..|.+|+-.-..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtL-KgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG--- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG--- 86 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccccc-ccccceEEEEEEccC-CceeccCCCceeEEEecccccc---
Confidence 799999999997665554 457999999999988888 899999999999999 9999999999999999754322
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.++. .+...|.|+.|+|-...+++++-+ ..-+|........ .+.....+.+.+|.. +|++++.|-
T Consensus 87 ~LkY--------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-----K~kss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 87 ILKY--------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-----KHKSSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred eeee--------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-----hhhhheeEEEeeecC-CCcEEEEec
Confidence 2221 222349999999999888887653 4567876654332 233344799999998 999999999
Q ss_pred CCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCC-----CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 235 NDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG-----SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
.+|+|.|-+-.. +..-.+... +.+++|.+++|+|.. ..+++.....++.+|.+. |+.+...+.+ .
T Consensus 152 ~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L----~--- 222 (1081)
T KOG1538|consen 152 FNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL----N--- 222 (1081)
T ss_pred cCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC----C---
Confidence 999999986543 222233332 578899999999943 468888888899988885 3332211111 1
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCe
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 387 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~ 387 (449)
..+.++.+-|+ |.|+. .|+.|+.+.+|-. .|-.+.++-. ....++.| +..|++++++.|. ||+
T Consensus 223 -FdP~CisYf~N---------GEy~L---iGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV-~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 223 -FDPCCISYFTN---------GEYIL---LGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTV-QAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -CCchhheeccC---------CcEEE---EccCCCceEEEee-cCeEEeeccc-cceeEEEE-EEccCCceEEEEEccCe
Confidence 12235566666 88888 7899999999864 6767777655 33678888 8999999999999 999
Q ss_pred EEEEcCCCch
Q 013086 388 IFIWRPKEKS 397 (449)
Q Consensus 388 i~iw~~~~~~ 397 (449)
|..|++....
T Consensus 287 iACyNl~fST 296 (1081)
T KOG1538|consen 287 IACYNLIFST 296 (1081)
T ss_pred eehhhhHHhH
Confidence 9999976543
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.4e-20 Score=159.45 Aligned_cols=191 Identities=20% Similarity=0.272 Sum_probs=159.2
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
.++++|+..+.|+|||+..... .....+|...|+++.++.. ..+|++++..|.|.|..+.++.....+..+...
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~-hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq---- 165 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLI-HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ---- 165 (673)
T ss_pred eeeeccCcCceeeehhhHHHHH-hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCC----
Confidence 6899999999999999995444 4444899999999999988 999999999999999999998887777655332
Q ss_pred CcccceeEEEEecCCCE-EEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 167 RTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
.+.-+.|++..+. |.+++.+|.|.+||+....+.... ...|..+...|+|+|.+..+|++.+.|..|.+||++
T Consensus 166 ----svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 166 ----SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ----eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 2778999998774 556889999999999887765443 334555899999999888999999999999999998
Q ss_pred CCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 246 RLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.......+ ....+.+.++|+++|.+|+.|...|.|..||++.-+
T Consensus 240 s~~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 240 SQASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 65443333 356778999999999999999999999999998654
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.2e-19 Score=148.17 Aligned_cols=227 Identities=15% Similarity=0.180 Sum_probs=163.9
Q ss_pred CCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe--cccCCceeEEEEeeCCCCeEEEE
Q 013086 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 59 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
......+...+.+|..+|+.|.|.|+.++++++++.|..|++|++++..++..+. .+|...|.++.|+++ +.+|+++
T Consensus 121 d~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~-gd~i~Sc 199 (385)
T KOG1034|consen 121 DVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD-GDRIASC 199 (385)
T ss_pred ecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC-CCeeecc
Confidence 3344667788999999999999999998999999999999999999999888874 679999999999999 8999999
Q ss_pred eCCCeEEEEeCCCCceeeeeecC----CCC----CC-----------CCCcccceeEEEEecCCCEEEEEcCCCeEEEEE
Q 013086 137 SSDGTVSCTDLETGLALSLMNVN----PNG----WH-----------GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVD 197 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~----~~~----~~-----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 197 (449)
+.|.+|++|++...+....++.. ++. +. ...+...|-|+.|- |.++++-+.++.|..|.
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWK 277 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEe
Confidence 99999999999854332222111 100 00 00111223333332 57888888889999998
Q ss_pred CCC-CCCcc---------c-eEEeecCCCceE--EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCCcE
Q 013086 198 ART-NSRSG---------E-AILIHRKGSKVV--GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVV 262 (449)
Q Consensus 198 ~~~-~~~~~---------~-~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v 262 (449)
... .+... . +....-....+. -.+|.| ....||.|...|.|++||++..+....-... .....|
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tV 356 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTV 356 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEecccccee
Confidence 732 11100 0 001111112233 345667 7789999999999999999986664222211 345678
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 263 NSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 263 ~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
...+|+.|+..|+..+.|+.|.-||..
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999999999853
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=6.4e-18 Score=151.76 Aligned_cols=280 Identities=11% Similarity=0.127 Sum_probs=172.3
Q ss_pred EEEEEcCCCcEEEEeCcCC-e--eeEEEecccCCceeEEEEeeCCCCeEEEEe-CCCeEEEEeCCC-CceeeeeecCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKV-S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLET-GLALSLMNVNPNG 162 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~~ 162 (449)
++++...++.|.+|++.+. . ....+ .+.+....++++|+ +++|++++ .++.|.+|++.. +.....-.....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-
Confidence 4555577899999999642 2 22233 24566788999999 88877664 478899999973 332211111111
Q ss_pred CCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE-EEeCCCeEE
Q 013086 163 WHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDHFAR 240 (449)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~ 240 (449)
.....++++|+++++++++ .++.|.+|++.+...................++++| ++++++ +...++.|.
T Consensus 80 -------~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 80 -------GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIR 151 (330)
T ss_pred -------CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence 1267899999999888875 478999999975332222212112223467788999 777775 455569999
Q ss_pred EEEccCCCCCC----ceeecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCC--CCCCCCCccce-ecCCCCccccc
Q 013086 241 IWDIRRLEAGS----SLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHLTP 312 (449)
Q Consensus 241 iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~~~ 312 (449)
+||+.+..... .............+.|+|+|++|+++.. ++.|.+|++.. ++. .....+. ..........+
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccc
Confidence 99997632211 0011122344678999999999988876 89999999974 222 1000000 00111111112
Q ss_pred eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce----EEEEEecCccceeceeeecCCCCcEEeecC--CC
Q 013086 313 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----LVAEVMDPNITTISPVNKLHPRDDVLASGS--SR 386 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--dg 386 (449)
..+.++|+ |+++.. +...++.|.+|++.... .+..+... .....+ .++|+|++|++++ ++
T Consensus 231 ~~i~~~pd---------g~~lyv--~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~-~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 231 ADIHITPD---------GRHLYA--CDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGF-NIDHSGKYLIAAGQKSH 296 (330)
T ss_pred eeEEECCC---------CCEEEE--ecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCce-EECCCCCEEEEEEccCC
Confidence 24667787 555542 22446889999985432 22332221 123345 7999999999866 79
Q ss_pred eEEEEcCC
Q 013086 387 SIFIWRPK 394 (449)
Q Consensus 387 ~i~iw~~~ 394 (449)
.|.+|+++
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999874
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-20 Score=177.69 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=174.3
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
..+..+..|++.|..+.|++..+++||+|+.||.|.|||+.+........ ....+.|.+++|+......|++++.+|.+
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 35678889999999999999987899999999999999999866555542 23567899999998767789999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCC---eEEEEECCCCCCccceEEeecCCCceE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.|||++..+.+..+...... ..+..++|+|+.. .+++++.|. .|.+||+|......+.+..|.. .|.
T Consensus 187 ~iWDlr~~~pii~ls~~~~~-------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--Gil 257 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGR-------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GIL 257 (1049)
T ss_pred eeccccCCCcccccccCCCc-------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc--cee
Confidence 99999988766655433221 2388999999864 555555443 8999999987766665555555 799
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++.|++.+..+|++++.|+.|.+|+..+++....+. .....+..+.|.|. -..+++++.||.|.||.+.....
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--CCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 999999888999999999999999998754433332 35567899999994 45889999999999999976553
No 170
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1e-18 Score=165.73 Aligned_cols=230 Identities=15% Similarity=0.204 Sum_probs=161.3
Q ss_pred CCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-------eeEEEecccCCceeEEEEeeCCCC
Q 013086 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDG 131 (449)
Q Consensus 59 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~ 131 (449)
.-|.+..+..|..|+..|..++.++....+|+||+.||+|++|+..... ...++ ......+.++.+.+. ++
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~-~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN-GD 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC-CC
Confidence 4667888999999999999999988764699999999999999986522 22222 225677888988888 89
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC-CC-EEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KG-VVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
.+|.++.||.|++.+++.......................+...++... +. .++.+...+.|..||++........ .
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-K 1190 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-h
Confidence 9999999999999998763111110000000000111112344444432 33 7888899999999999987665444 2
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC---CCEEEEee--CCCcEE
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS---GSKILTTS--QDNRLR 284 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~ 284 (449)
.....+.|++++.+| .+++++.|+..|.+.+||+|-........ .++..+|+.+..+|- ....++++ ..+.|.
T Consensus 1191 ~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred cCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 333344899999999 88899999999999999998644433332 245578888888872 24454444 477899
Q ss_pred EEeCCCCCC
Q 013086 285 IWDSIFGNL 293 (449)
Q Consensus 285 vwd~~~~~~ 293 (449)
+|++.+|..
T Consensus 1269 ~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1269 TWNMETGLR 1277 (1431)
T ss_pred eeecccCcc
Confidence 999998865
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.6e-18 Score=162.07 Aligned_cols=306 Identities=19% Similarity=0.282 Sum_probs=201.5
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc--cCCceeEEEEeeC-CCCeEEEEeCCCeEEEE
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFNPT-NDGTVYAASSDGTVSCT 145 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iw 145 (449)
+.+....-..+.|+|-.+ .++++...-.|+|||.+.++....+..+ ....|+.+.+-.. +..++++|+.||.|+||
T Consensus 1060 ~~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HhcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 344444566788888875 5777776678999999998876665322 3456888888643 36789999999999999
Q ss_pred eCCCC-----ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 146 DLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 146 d~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
+--.. +.+.....-.....+.... -.-++|.....+|++++.-..|+|||.........+.. ....-++++
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~--~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaL 1214 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGT--GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTAL 1214 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCC--CeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--CCCccceee
Confidence 74322 1221111111111111111 13456777778888888889999999988765543322 233468888
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCc--EEEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCCCCC
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRV--VNSAYFSPSGSK-ILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~--v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
.-+...++++++|..||.|++||.+.......+... .|... |..+.+.+.|-- |++|+.||.|++||++.......
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 776657899999999999999999876554344333 57666 999999986654 99999999999999987422111
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEE------EecCccceecee
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE------VMDPNITTISPV 370 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~v~~v 370 (449)
.. +......+...+ .+..++. ...++ +|+. +.|.||++. |+.+.. +.+...+.+.++
T Consensus 1295 ~~-iv~~~~yGs~lT--al~VH~h---------apiiA---sGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1295 LT-IVAHWEYGSALT--ALTVHEH---------APIIA---SGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred ce-eeeccccCccce--eeeeccC---------CCeee---ecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee
Confidence 11 111111111111 2222333 33344 5666 889999985 333332 334455667777
Q ss_pred eecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 371 NKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+|+|..-++|+|+ |..|.||....+.
T Consensus 1358 -~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 -AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -eecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999 9999999876543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=141.91 Aligned_cols=262 Identities=18% Similarity=0.188 Sum_probs=174.0
Q ss_pred eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee----ecCCCCCCCCCcccceeEEEEe-------cCCCEEEEEc
Q 013086 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM----NVNPNGWHGPRTWRMLYGMDIN-------PEKGVVLVAD 188 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~ 188 (449)
...+.|+|+ +..|++-+.|..+.+|++...-..... ...............|...+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456789999 999999999999999998642111110 0000000001111236666664 6778999999
Q ss_pred CCCeEEEEECCCCCCccceEEeecCC---CceEEEEEcCCCCCEEEEEeCCCeEEEEEc-cCCCCCCceeec-----CCC
Q 013086 189 NFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELLLSCGNDHFARIWDI-RRLEAGSSLCDL-----PHK 259 (449)
Q Consensus 189 ~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~-----~~~ 259 (449)
.+.-|++||.-+++..... ....+. ....+++|+| ++..|++|. ...|++||+ |.+..-....+. +..
T Consensus 131 r~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccch-hhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999998765332 221221 2456899999 999998875 689999999 443332232222 336
Q ss_pred CcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCC
Q 013086 260 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 260 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
+-|.+++|+| +.+.+++++....+-||.-..+..+.. .+...+ .+..+.|.++ |+.+. +
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l------lggh~g--GvThL~~~ed---------Gn~lf---s 267 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL------LGGHGG--GVTHLQWCED---------GNKLF---S 267 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceee------ecccCC--CeeeEEeccC---------cCeec---c
Confidence 7889999999 667999999999998888765554321 112222 2236789998 44333 3
Q ss_pred C-CCCcceEEEECCC-ceEEEEEecCccceeceee-ecCCCCcEEeecC-CCeEEEEcCCC-chhhhhhhcc
Q 013086 339 G-AALHPIDFIDITT-GQLVAEVMDPNITTISPVN-KLHPRDDVLASGS-SRSIFIWRPKE-KSELVEQKEE 405 (449)
Q Consensus 339 ~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~-~~~~~~~~l~s~s-dg~i~iw~~~~-~~~~~~~~~~ 405 (449)
| -.+..|..||++. +.++..+..|....-..|. ...|++++|++|+ ||.|++||++. |..+..+..+
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 3 3567899999975 4566677666533333331 5689999999998 99999999998 6645444433
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.2e-18 Score=132.67 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=179.6
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC---------CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.|.+-+++|.+ ++|+.|..+|+|.+..+.. ++......++|.++|+.++|+ ..+|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEe
Confidence 46677899998 7999999999999999854 233333447899999999998 45788877 5999999
Q ss_pred eCCCCce----eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 146 DLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 146 d~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
..+.... ....+.......+...-..|+++...|..+.++.++.|+.++-||+++++... ....|...+.++.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVV 163 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeee
Confidence 8754322 11111111111111122348999999999988888899999999999987543 3455566899998
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCC--------CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH--------KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
--. ....+++|+.||++++||.++.+..+.+....+ ...|.+++. +..+|++|+ ...+.+|.++..+.
T Consensus 164 ~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 164 GRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 755 566799999999999999998776555544322 234555655 556777665 55899999987665
Q ss_pred CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeec
Q 013086 294 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKL 373 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~ 373 (449)
.. .|.-..+...+.+....+. .++..+.|.-|.+ +|.+.......+...... .+
T Consensus 240 t~--------------------vfpipa~v~~v~F~~d~vl---~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~--s~ 293 (325)
T KOG0649|consen 240 TC--------------------VFPIPARVHLVDFVDDCVL---IGGEGNHVQSYTL-NGVLQANIPVESTACYSA--SW 293 (325)
T ss_pred eE--------------------EEecccceeEeeeecceEE---Eeccccceeeeee-ccEEEEeccCCccceeee--cc
Confidence 22 1111111112222233333 4666677888876 455555555444222222 23
Q ss_pred CCCC-cEEeecC-CCeEEEE
Q 013086 374 HPRD-DVLASGS-SRSIFIW 391 (449)
Q Consensus 374 ~~~~-~~l~s~s-dg~i~iw 391 (449)
+..- ++|..++ ...+.|+
T Consensus 294 ~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 294 QTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cCCceEEEEecccceeeeee
Confidence 3222 3444455 6777765
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.7e-19 Score=157.64 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=181.7
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--------eeeEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
.++..|.+.|..++|.+..+ .|++++.||.+++|+++.. ..+..+ .+|.++|.|++..++ +..+++|+.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n-~~~~ysgg~ 364 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN-GEHCYSGGI 364 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC-ceEEEeecc
Confidence 37889999999999999884 7999999999999999331 234445 789999999999999 999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
||+|+.|++....- |+.. +|. ......+. ++...+.
T Consensus 365 Dg~I~~w~~p~n~d--------------------------p~ds-------------~dp---~vl~~~l~--Ghtdavw 400 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQD--------------------------PDDS-------------YDP---SVLSGTLL--GHTDAVW 400 (577)
T ss_pred CceeeeeccCCCCC--------------------------cccc-------------cCc---chhcccee--cccccee
Confidence 99999998762110 0000 000 01111223 3444799
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
.+++++ ....|++++.||++++|+...... ..+......+...++.+-... ..+++...-+.--++++..+......
T Consensus 401 ~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~ 478 (577)
T KOG0642|consen 401 LLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIF 478 (577)
T ss_pred eeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeec
Confidence 999999 888899999999999999875443 122222223344556654322 12222222222333333332221111
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
.... ............+.++|.. .+. +++..++.|+++|..++++++....|. ..++++ ++.|+|
T Consensus 479 ~s~~-~~~~~~~~~in~vVs~~~~---------~~~---~~~hed~~Ir~~dn~~~~~l~s~~a~~-~svtsl-ai~~ng 543 (577)
T KOG0642|consen 479 ESSA-SPGPRRYPQINKVVSHPTA---------DIT---FTAHEDRSIRFFDNKTGKILHSMVAHK-DSVTSL-AIDPNG 543 (577)
T ss_pred cccC-CCcccccCccceEEecCCC---------Cee---EecccCCceecccccccccchheeecc-ceecce-eecCCC
Confidence 1000 0011111222356666652 222 267899999999999999999988776 788888 999999
Q ss_pred cEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 378 DVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
-+|++++ ||.+++|.+.....+.....|
T Consensus 544 ~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ceEEeecCCceeehhhccchheeeccccc
Confidence 9999999 999999999877666554443
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.4e-18 Score=137.07 Aligned_cols=227 Identities=15% Similarity=0.200 Sum_probs=159.3
Q ss_pred cccceeeeccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCCe--------eeEEEecccCCceeEEEEeeCC-CCe
Q 013086 63 QVNCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVS--------EKIVYGNIHSCIVNNIRFNPTN-DGT 132 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~~~~~-~~~ 132 (449)
-.+-...+.|.+.|..+.|.+ .-.+++|+++.|+++.||.-.... ............|+++.|.|.. +-.
T Consensus 49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 345567889999999999954 323799999999999999763211 1122224567889999999963 667
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCC----CCCCCCcccceeEEEEecC---CCEEEEEcCC-----CeEEEEECCC
Q 013086 133 VYAASSDGTVSCTDLETGLALSLMNVNPN----GWHGPRTWRMLYGMDINPE---KGVVLVADNF-----GFLYLVDART 200 (449)
Q Consensus 133 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~ 200 (449)
+++++.||+||||+....-.+....+..+ ............|+.|++. ..+|++|+.+ +.++||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 99999999999998765433222211110 0011122234778999874 4578888766 4788887655
Q ss_pred CC-CccceEEeecCCCceEEEEEcCCCC---CEEEEEeCCCeEEEEEccCCC-----------------CCCceeec-CC
Q 013086 201 NS-RSGEAILIHRKGSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLE-----------------AGSSLCDL-PH 258 (449)
Q Consensus 201 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~-~~ 258 (449)
.. ..........+..+|++++|.|.-+ .+|++++.|| |+||.+.... ....+..+ +|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 43 2222223446777999999999544 4899999999 9999987411 01122222 69
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 259 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 259 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+.|..+.|+-.|..|++.+.||.|++|...-
T Consensus 288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99999999999999999999999999998753
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=138.21 Aligned_cols=209 Identities=20% Similarity=0.228 Sum_probs=158.8
Q ss_pred ccCccEEEEEEeCCC----CcEEEEEcCCCcEEEEeCcCCeeeEE--------EecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 71 YHSRRVTCLEFHPTN----NHILLSGDKKGQVGVWDFYKVSEKIV--------YGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~----~~~l~t~~~d~~i~vwd~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
.|.-+++.+.|.|+. +.+|||++ -.+|+|.+........ ....+..++++..|+.-..+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999975 34677765 3799999874221111 113467899999999876889999999
Q ss_pred CCeEEEEeCCCCce---eeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 139 DGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 139 dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
|-+..|||++++.. ...+..|.. .|..++|...+ ..+++.+.||.+++||++.......+.......
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDK---------EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDK---------EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCc---------ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 99999999998733 223333332 39999999865 478889999999999999876544333333334
Q ss_pred CceEEEEEcCCCCCEEEEEeCC-CeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.+...++|++.+.+++++-..| ..|.|.|+|.... ......+|.+.|+.++|.| ....|++++.|..+.+||+...
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 5788999999899999887665 4799999986443 2222337999999999999 6778999999999999999753
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=6.7e-18 Score=154.95 Aligned_cols=261 Identities=21% Similarity=0.295 Sum_probs=178.0
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-----eEEEecccCCceeEEEEeeCC-CCeEEEEeCCCeEEEE
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----KIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 145 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iw 145 (449)
-...|+|+.|+|..+.+++.|..+|+|.+||+..+.. .......|..+++.+.|..+. +.-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4678999999999889999999999999999987654 222335699999999998762 2348999999999999
Q ss_pred eCCCCceee-eeecCCCC--CCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCcc----c-eEEeecCCCc
Q 013086 146 DLETGLALS-LMNVNPNG--WHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSG----E-AILIHRKGSK 216 (449)
Q Consensus 146 d~~~~~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~----~-~~~~~~~~~~ 216 (449)
+++.-.... ........ .........+++++|.+. ...+++|+..|.|..-......... . ......+.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876533211 11111110 001122234888999884 4689999999999874443332221 1 1122345668
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
|+++.++|....++++++ |.+++||...... ...+....+...|++++||| ....|+++..||.|.+||+......-
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCC-CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999997777888877 9999999976211 12232234667799999999 45678888889999999997544321
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
... .... ......+.|++. |+.++ .|...|++.+|++..
T Consensus 479 v~s-----~~~~-~~~l~~~~~s~~---------g~~la---vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLS-----QKVC-SPALTRVRWSPN---------GKLLA---VGDANGTTHILKLSE 517 (555)
T ss_pred ccc-----cccc-ccccceeecCCC---------CcEEE---EecCCCcEEEEEcCc
Confidence 111 1111 111124667766 77777 789999999999853
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.3e-19 Score=154.09 Aligned_cols=224 Identities=19% Similarity=0.291 Sum_probs=164.6
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC-CCeEEEEeCCCeEEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 145 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iw 145 (449)
+.|.||++.|+|+.|+.+| .+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|.. +..+++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6799999999999999999 6999999999999999998888888889999999999999863 6678899999999999
Q ss_pred eCCCCceeeee---ecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccce-------EEeecCC
Q 013086 146 DLETGLALSLM---NVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA-------ILIHRKG 214 (449)
Q Consensus 146 d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~ 214 (449)
|+...+.-..- ......+ ..+...|..++..|++ ..+.++++||+|+-+|++.......- ......-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~--~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCW--SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred ecccccccccccCccchhhhh--hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99853221110 0000001 1122347778888888 78999999999999999974332211 1111222
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC-----------CC----ceeec--CCC-----------CcEEEEE
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-----------GS----SLCDL--PHK-----------RVVNSAY 266 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~----~~~~~--~~~-----------~~v~~~~ 266 (449)
-...++.++|.+..+|++|+.|-..++||.+.... .. .+..+ +|. ..++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 35779999998999999999999999999542111 00 11111 111 1256789
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
|+|+|.-|++.-....|+++|+..++.
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 999998888777677999999986653
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=138.44 Aligned_cols=206 Identities=16% Similarity=0.206 Sum_probs=158.6
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee--eEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
.|..+++++.|+.-.++++.+++-|-+..|||++++.. +.+.+..|...|.+++|...+.+.|++++.||+|++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 45679999999998889999999999999999998633 4455578999999999998767899999999999999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcC-CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
..+....+-..+.. ......++|+++. +++|+-.. ...|.+.|++...... .....|.+.|+.++|.|..
T Consensus 228 ~leHSTIIYE~p~~------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSP------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ccccceEEecCCCC------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce--ehhhcCcccccceEecCCC
Confidence 87665555433322 2348889998865 56666544 4589999999876543 3456677799999999988
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCC---CceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEE
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAG---SSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRI 285 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~v 285 (449)
...|.+++.|..+.+||+.+.-.. ..+......+.|+.+.|++ .+..++.+.. +.+.+
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 999999999999999999864331 1121224667899999997 6677777654 34443
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.2e-17 Score=150.97 Aligned_cols=298 Identities=17% Similarity=0.184 Sum_probs=200.2
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC---CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.|.-.++|.+++|++ +++|+|..||.|.+|.--. .....+...-|...|+++.|+++ +.+|++|+..|.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC-CceEeecccceEEEEEee
Confidence 466678999999999 7999999999999996433 22333444568899999999999 999999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe--------ecCCCceEE
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI--------HRKGSKVVG 219 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~ 219 (449)
.+++..... +-...|..+.++||+.+.+....|..|.+....+......+... ....+-.+.
T Consensus 281 ~T~~kqfLP----------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 281 ETGKKQFLP----------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred cCCCccccc----------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 998833222 22234999999999999999999999999987654332211110 112334677
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC---------CCCcEEEEEEcCCCCEEEEeeC--------C--
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---------HKRVVNSAYFSPSGSKILTTSQ--------D-- 280 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~--------d-- 280 (449)
++++| ..+.++..+..|.|.+||+.+......+.... +...++.++.+..|.+++|.-. |
T Consensus 351 ~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 351 VSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 88999 88888889999999999998766654444331 2235677888888999988642 2
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccce-eeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE----
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL---- 355 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~---- 355 (449)
-.+++|-.......-.+. ............ .+..++.... ..+ +++.||.++||-+...+.
T Consensus 430 ~~LKFW~~n~~~kt~~L~---T~I~~PH~~~~vat~~~~~~rs~--------~~v---ta~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILN---TKINNPHGNAFVATIFLNPTRSV--------RCV---TASVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred EEEEEEEEcCCcceeEEE---EEEecCCCceeEEEEEecCcccc--------eeE---EeccCCeEEEEEEecccccCcC
Confidence 357778765433211000 000001111111 2222222111 111 467899999998832211
Q ss_pred -----EEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCc
Q 013086 356 -----VAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 396 (449)
Q Consensus 356 -----~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~ 396 (449)
...+..-+...+... +|+.||.+|+.+-|+.|.+||..+.
T Consensus 496 ~s~W~c~~i~sy~k~~i~a~-~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPITAL-CFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccceEEeeeeccccCcccch-hhcCCCcEEEEecCCEEEEecCCCh
Confidence 111111233566666 8999998888888999999999884
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1e-17 Score=153.70 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=186.6
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee--eeeecCCCCCCCCCccccee
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~i~ 173 (449)
+.+.||++......... -.-...|+++.|+|....+++.|..+|.|.+||++.+... ..+.. ..+.+...+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~-----~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA-----LEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc-----ccccCCcCeE
Confidence 47999999887444333 2367889999999998889999999999999999987663 22222 2233444588
Q ss_pred EEEEecCCC--EEEEEcCCCeEEEEECCCCCCccceEEe---------ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEE
Q 013086 174 GMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAILI---------HRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 242 (449)
Q Consensus 174 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 242 (449)
.+.|..+.. -+++++.||.|..|+++........... ......+++++|.+.+.+.+++|+.+|.|.-=
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 888876544 4999999999999998765442221111 11223689999999999999999999999874
Q ss_pred EccCCCCCC------ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceee
Q 013086 243 DIRRLEAGS------SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRA 315 (449)
Q Consensus 243 d~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 315 (449)
+........ ......|.++|.++.++|-+..++..+.|-+++||....... |. ..+..... .+.+
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--Pl------~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--PL------LSLDSSPDYVTDV 447 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC--cc------hhhhhccceeeee
Confidence 443332222 112225889999999999665555545599999998752111 11 11111111 3478
Q ss_pred eeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc--eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 316 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG--QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 316 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
+|+|..+.... ++..+|.|.+||+... .++.+..-. ......+ .|++.|++|++|. .|.+.+|+
T Consensus 448 aWSptrpavF~-----------~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~-~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 448 AWSPTRPAVFA-----------TVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRV-RWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCcCceEEE-----------EEcCCCceehhhhhccccCCccccccc-cccccee-ecCCCCcEEEEecCCCcEEEEE
Confidence 99998642222 4677899999999644 333333333 2344444 8999999999999 89999999
Q ss_pred CCC
Q 013086 393 PKE 395 (449)
Q Consensus 393 ~~~ 395 (449)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 854
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=3.4e-16 Score=146.75 Aligned_cols=294 Identities=26% Similarity=0.427 Sum_probs=213.8
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCC-eEEEEeCCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDG 140 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg 140 (449)
......+..|...|..++|+|++ .++++++. |+.+++|++........+ .+|...|.+++|+|+ +. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPD-GGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCC-cceEEEEecCCC
Confidence 45567889999999999999999 47788875 999999999986666666 569999999999988 65 555558999
Q ss_pred eEEEEeCCCCceee-eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
.|++||...+.... .+..+... . ...|++++.++++++.++.+++|++......... ...+...+.+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~ 289 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDS---------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLS 289 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcc---------e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE--EecCCccEEE
Confidence 99999988766665 33322221 2 2279999989999999999999999977651111 1344568999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+.|.| ++..+++++.|+.+.+||..............|...+..+.|.+++..++.+ ..|+.+.+|++...... .
T Consensus 290 ~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~ 365 (466)
T COG2319 290 VAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL---K 365 (466)
T ss_pred EEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee---E
Confidence 99999 8888888999999999988765543333323566679999994343566665 67899999999766510 0
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
. ...... ...+.+.+ . ..... .+..++.+.+|+.............. ..+... .+++++.
T Consensus 366 ~---~~~~~~---~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 425 (466)
T COG2319 366 T---LEGHSN---VLSVSFSP-D-GRVVS----------SGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSL-DFSPDGK 425 (466)
T ss_pred E---ecCCce---EEEEEECC-C-CCEEE----------EecCCCceEEEecccCeeeeeccCCC-CcEEEE-EECCCCc
Confidence 0 000000 22445555 3 22222 25678899999999998887776653 344444 6899999
Q ss_pred EEeecC-CCeEEEEcCCC
Q 013086 379 VLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 379 ~l~s~s-dg~i~iw~~~~ 395 (449)
.+++++ ++.+++|+..+
T Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCcEEEEeccC
Confidence 999977 89999999988
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=6.3e-18 Score=135.92 Aligned_cols=212 Identities=19% Similarity=0.233 Sum_probs=157.0
Q ss_pred ccceeee-ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee-EEEe----cccCCceeEEEEeeC-CCCeEEEE
Q 013086 64 VNCAVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-IVYG----NIHSCIVNNIRFNPT-NDGTVYAA 136 (449)
Q Consensus 64 ~~~~~~~-~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~-~~~~----~~h~~~v~~~~~~~~-~~~~l~s~ 136 (449)
.++..|. .|-+.|.|+.|.|++++ +++-. |..|.+|++.....+ ..+. ..|....++-+|+|. +++.+++.
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 3455555 56679999999999865 55444 889999999886652 2221 335667888899983 36666665
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
+ |+++..||+++......+.-.. ...+..+.|+|+.. +|++++.||.|++||.+..+.... ..+.|..
T Consensus 191 ~-d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~--el~~HsH 259 (370)
T KOG1007|consen 191 S-DSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ--ELPGHSH 259 (370)
T ss_pred C-CCcEEEEEccchhhhcchhhhh--------cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc--ccCCCce
Confidence 5 8899999999877665554221 12489999999876 677789999999999998776644 3444555
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC---------------------C-----Cceeec-CCCCcEEEEEEc
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA---------------------G-----SSLCDL-PHKRVVNSAYFS 268 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------~-----~~~~~~-~~~~~v~~~~~~ 268 (449)
.|.++.|+|...++|++|+.|..|.+|....-.. . ..+..+ .|...|.+++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 9999999998899999999999999997643221 0 011122 588999999999
Q ss_pred C-CCCEEEEeeCCCcEEEEeC
Q 013086 269 P-SGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 269 ~-~~~~l~~~~~dg~i~vwd~ 288 (449)
. +.=.+|+-+.||.+.|=.+
T Consensus 340 sadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cCCCeeEEEeccCceEEeecC
Confidence 8 5556788899999988665
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.1e-18 Score=148.99 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=174.2
Q ss_pred EEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC--EEEEEc
Q 013086 111 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG--VVLVAD 188 (449)
Q Consensus 111 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~ 188 (449)
....+|.+.|.+|...|. +..|++|+.||+|+||.+.+|.++..+.+... |.+++|+|.+. .||++.
T Consensus 394 lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~----------I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSE----------IRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecce----------eEEEEecCCCCceeEEEEe
Confidence 344789999999999998 99999999999999999999999999887653 99999999765 444444
Q ss_pred CCCeEEEEECCCCCC---------------------------------cc-ceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 189 NFGFLYLVDARTNSR---------------------------------SG-EAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 189 ~dg~i~i~d~~~~~~---------------------------------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.. .+.+.+..-+.. .. .+...-.+...|..+.|+. .|.+|++..
T Consensus 463 ~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~ 540 (733)
T KOG0650|consen 463 GE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVM 540 (733)
T ss_pred cC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEec
Confidence 33 355554322200 00 0011123345799999999 999999976
Q ss_pred CC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc
Q 013086 235 ND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 235 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (449)
.+ ..|.|+++........+. ...+.|.++.|+|...+|++++. ..|+|||+..+++.... .....+++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL------~tg~kwiS 611 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL------LTGSKWIS 611 (733)
T ss_pred cCCCcceEEEEecccccccCchh--hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH------hcCCeeee
Confidence 64 478899987544432222 35678999999999999988874 58999999765543211 11112222
Q ss_pred ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce-EEEEEecCccceeceeeecCCCCcEEeecC-CCeEE
Q 013086 312 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 389 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~ 389 (449)
.++.+|. |.-+. .|+.|+.+..+|+.-+. ..+++..|. ..+..| +|++.-.++++|+ ||.+.
T Consensus 612 --~msihp~---------GDnli---~gs~d~k~~WfDldlsskPyk~lr~H~-~avr~V-a~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 612 --SMSIHPN---------GDNLI---LGSYDKKMCWFDLDLSSKPYKTLRLHE-KAVRSV-AFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred --eeeecCC---------CCeEE---EecCCCeeEEEEcccCcchhHHhhhhh-hhhhhh-hhccccceeeeecCCCcEE
Confidence 3444554 43333 48899999999998654 445555554 888999 9999999999999 89999
Q ss_pred EEc
Q 013086 390 IWR 392 (449)
Q Consensus 390 iw~ 392 (449)
|+.
T Consensus 676 Vfh 678 (733)
T KOG0650|consen 676 VFH 678 (733)
T ss_pred EEe
Confidence 986
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1e-16 Score=133.39 Aligned_cols=241 Identities=15% Similarity=0.226 Sum_probs=172.1
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC--CeEEEEeCCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETG 150 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~ 150 (449)
...+..+.|+.+. .+|..|+.|| -++|+.......... ......|--+-|+ ..+++..+.+ +.+++.++..+
T Consensus 5 ~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred Ccceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccC
Confidence 3457778899988 6888888887 678887665442222 2233456666677 4477776654 34999999988
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
..+..+..+.. |.++.++. +.|++.-.+ .|+|||+++.+.+..+.....+...+.++.+++ .+.++
T Consensus 79 ~~ICe~~fpt~----------IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~yl 144 (391)
T KOG2110|consen 79 TTICEIFFPTS----------ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYL 144 (391)
T ss_pred ceEEEEecCCc----------eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceE
Confidence 88888877654 88887754 445555544 499999999988766655544544577777776 66677
Q ss_pred EEEe--CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 231 LSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 231 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
+.-+ ..|.|.+||..+.+....+. .|.+.+.+++|+++|.+||++|..|+|
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTV------------------------- 197 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTV------------------------- 197 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceE-------------------------
Confidence 7643 36899999998866655554 699999999999999999999988753
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC-ccceeceeeecCCCCcEEeecC-CC
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP-NITTISPVNKLHPRDDVLASGS-SR 386 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~s-dg 386 (449)
|||+.+.+|+.+..|+.+ ....+..+ +|+|++++|++.+ .+
T Consensus 198 ------------------------------------IRVf~v~~G~kl~eFRRG~~~~~IySL-~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 198 ------------------------------------IRVFSVPEGQKLYEFRRGTYPVSIYSL-SFSPDSQFLAASSNTE 240 (391)
T ss_pred ------------------------------------EEEEEcCCccEeeeeeCCceeeEEEEE-EECCCCCeEEEecCCC
Confidence 444444555555555433 22456677 8999999999988 79
Q ss_pred eEEEEcCCCch
Q 013086 387 SIFIWRPKEKS 397 (449)
Q Consensus 387 ~i~iw~~~~~~ 397 (449)
+|.||.++...
T Consensus 241 TVHiFKL~~~~ 251 (391)
T KOG2110|consen 241 TVHIFKLEKVS 251 (391)
T ss_pred eEEEEEecccc
Confidence 99999876543
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.7e-16 Score=132.23 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=154.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 75 RVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
.|--+-|+.. ++|..+.+ +.+++.+......+..+. ....|.++.++. +.|+++-.+ .|+|||+.+.+.
T Consensus 48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc---ceEEEEEcc-cEEEEeccccee
Confidence 4666667654 45444433 458999998888777765 678899999984 477777765 499999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE--cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
+.++...+.. ...+.++++++.+.+++.- ...|.|.+||..+.+... ..+.|.+.+.+++|++ +|.+|
T Consensus 119 LhTI~t~~~n------~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~-~G~ll 188 (391)
T KOG2110|consen 119 LHTIETTPPN------PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSP-DGTLL 188 (391)
T ss_pred ehhhhccCCC------ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECC-CCCEE
Confidence 8887654221 2237777777777888874 456899999999876553 4557777999999999 99999
Q ss_pred EEEeCCCe-EEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 231 LSCGNDHF-ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 231 ~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
|+++..|+ ||++.+.+++....++.--....|.+++|+|++++|++.+..++|++|.+....
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999985 789999876665555433346689999999999999999999999999997654
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=146.38 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=153.7
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 156 (449)
.+++|+.+| ..|++|+.||.+|||++......... ..|...|.++.|+|+ +.+|++.+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999998 68999999999999998776666655 579999999999999 9999999999 8999999999665554
Q ss_pred ecCCCCCCCCCcccceeEEEEecCC---CE--EEEEcCCCeEEEEECCCCCCc--cceEEeecCCCceEEEEEcCCCCCE
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEK---GV--VLVADNFGFLYLVDARTNSRS--GEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
.-. .....+..+.|+.++ .+ ++.....+.|..||+.....- ....+.......|+++++++ ++++
T Consensus 224 t~~-------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf 295 (398)
T KOG0771|consen 224 TPF-------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKF 295 (398)
T ss_pred CCc-------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcE
Confidence 311 111236777888777 33 333345567877776543321 11111111223699999999 9999
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
++.|+.||.|-|++..+.+..+.+. ..|...|+.+.|+|+.+++++.+.|..+.|..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999998765544332 26889999999999999999999999999988753
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.4e-16 Score=142.17 Aligned_cols=321 Identities=13% Similarity=0.161 Sum_probs=215.9
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCC--cEEEEEcCCCcEEEEeCcCCeeeEEEe---------------------
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVSEKIVYG--------------------- 113 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~t~~~d~~i~vwd~~~~~~~~~~~--------------------- 113 (449)
++......|++.|.+|..+++.+.+.|... .++++++.||.|++||...+..+.++.
T Consensus 41 VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~ 120 (792)
T KOG1963|consen 41 VYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANV 120 (792)
T ss_pred EEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcccee
Confidence 455666888999999999999999998775 467799999999999984432221100
Q ss_pred --------------------------------------------------------------------------------
Q 013086 114 -------------------------------------------------------------------------------- 113 (449)
Q Consensus 114 -------------------------------------------------------------------------------- 113 (449)
T Consensus 121 ~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~ 200 (792)
T KOG1963|consen 121 YVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI 200 (792)
T ss_pred EeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchh
Confidence
Q ss_pred -cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC--Cc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 114 -NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET--GL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 114 -~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
..|.-.+++.+++|+ +++++++..||.|.+|.--. +. ....+.-|. ..|.+++|+++|.+|++|+
T Consensus 201 ~~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---------~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---------DEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred hhhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecc---------cccceeEEecCCceEeecc
Confidence 115556899999999 99999999999999996433 11 122222222 2499999999999999999
Q ss_pred CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---------CCC
Q 013086 189 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---------PHK 259 (449)
Q Consensus 189 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~ 259 (449)
..+.+.+|.+.+++.. ..++-+++|..+.++| ++.+.+....|..|.+....++.....+..+ ...
T Consensus 271 ~E~VLv~Wq~~T~~kq----fLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 271 REGVLVLWQLETGKKQ----FLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred cceEEEEEeecCCCcc----cccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence 9999999999998732 3455666899999999 9999988889999999988665543333322 124
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCC---CccccceeeeeccCCCCCceEEEcceeccc
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF---NRHLTPFRAEWDPKDPSESLAVIGRYISEN 336 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 336 (449)
+-.+.++++|.-+.++..+..|.|.+||+.+...+............ ..+....++..+.. ...+++...++...
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKF 423 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhh
Confidence 45678899997777888899999999999887665322221111111 11111222333333 22222222222211
Q ss_pred CCCCCCcceEEEECCC----ceEEEEEecCccceeceeeecCCCCc-EEeecC-CCeEEEEcCC
Q 013086 337 YNGAALHPIDFIDITT----GQLVAEVMDPNITTISPVNKLHPRDD-VLASGS-SRSIFIWRPK 394 (449)
Q Consensus 337 ~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~s-dg~i~iw~~~ 394 (449)
........+++|-... ..+...+..+|...+...+..++... .+++++ ||.++||-+.
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 1222245688897653 34555555666555544424455444 788888 9999999883
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=2.2e-15 Score=141.20 Aligned_cols=292 Identities=24% Similarity=0.415 Sum_probs=205.7
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-eeEEEecccCCceeEEEE-eeCCCC-eEEEEeC-CCeEE
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRF-NPTNDG-TVYAASS-DGTVS 143 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~-~~~~~~-~l~s~~~-dg~v~ 143 (449)
.+..|...|.++.+.+.+ ..++.++.|+.+.+|+..... ....+...+...+..+.+ +++ .. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEE
Confidence 577899999999999998 578888889999999998886 444442223347777777 666 55 4555444 99999
Q ss_pred EEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 144 CTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 144 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+|+... ......+..+... +..++|+|++..+++++. ++.+++|++....... ....+...+.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 205 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSES---------VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLA 205 (466)
T ss_pred EEEecCCCeEEEEEecCccc---------EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE---eeccCCCceEEEE
Confidence 999987 6666666555443 889999999998888885 9999999999844332 2333566899999
Q ss_pred EcCCCCC-EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccc
Q 013086 222 CNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 300 (449)
Q Consensus 222 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (449)
|+| ++. .+++++.|+.|++||......... ....|.... ...|+|++.++++++.|+.+++|++..... ..
T Consensus 206 ~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~ 277 (466)
T COG2319 206 FSP-DGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LL 277 (466)
T ss_pred EcC-CcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EE
Confidence 998 776 556658999999998773222111 123566554 338999998999999999999999986554 00
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe--cCccceeceeeecCCCCc
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--DPNITTISPVNKLHPRDD 378 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~ 378 (449)
... .........+.|.|. +..++ +++.|+.+.+||..+........ .+. ..+..+ .|.+++.
T Consensus 278 ~~~--~~~~~~v~~~~~~~~---------~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 341 (466)
T COG2319 278 RTL--SGHSSSVLSVAFSPD---------GKLLA---SGSSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSL-SFSPDGS 341 (466)
T ss_pred EEE--ecCCccEEEEEECCC---------CCEEE---EeeCCCcEEEEEcCCCceEEEeeecccC-CceEEE-EECCCCC
Confidence 011 111222235577774 33333 34555779999999888777665 444 356666 5644435
Q ss_pred EEeec-C-CCeEEEEcCCCch
Q 013086 379 VLASG-S-SRSIFIWRPKEKS 397 (449)
Q Consensus 379 ~l~s~-s-dg~i~iw~~~~~~ 397 (449)
.++.+ . |+.+.+|+.....
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeecCCCcEEeeecCCCc
Confidence 55555 5 8999999998877
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=142.98 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=200.6
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEEcCCC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFG 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg 191 (449)
..|.+.|+.+.|+.. +..|++++.|..|.+||...+.....+... |. ..|....|-| +...+++.+.||
T Consensus 139 ~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG------H~--~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESG------HC--NNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred cCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccc------cc--cchhhhhccCCCCCcCceeccccC
Confidence 679999999999999 999999999999999999988776665422 11 1255555666 356899999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCC---cEEEEEE
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR---VVNSAYF 267 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~ 267 (449)
.+++=.+..............+.++|.-++.-|.....|.+++.|+.+.-+|+++......+... .+.. ....++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99998876655554455666777799999999988899999999999999999986665444433 2223 5678899
Q ss_pred cC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCc---cceecCCC-CccccceeeeeccCCCCCceEEEcceecccCCCCCC
Q 013086 268 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR---EIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 342 (449)
Q Consensus 268 ~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d 342 (449)
.| +..++++++.|..+++||.+.-......+ .....+.. .....+.++.|+.+. +.+++ +..|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--------sElLa----SYnD 357 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG--------SELLA----SYND 357 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc--------cceee----eecc
Confidence 99 44589999999999999987544321111 11111111 223333456676553 33333 5667
Q ss_pred cceEEEECC--Cc----------eEEEE-EecCc-cceeceeeecCCCCcEEeecCC-CeEEEEcCCCchhhhhhhccce
Q 013086 343 HPIDFIDIT--TG----------QLVAE-VMDPN-ITTISPVNKLHPRDDVLASGSS-RSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 343 ~~i~iwd~~--~~----------~~~~~-~~~~~-~~~v~~v~~~~~~~~~l~s~sd-g~i~iw~~~~~~~~~~~~~~~~ 407 (449)
-.|+++.-. .| ..+.. +.+|. ...|..++.|-|...|+++|+| |.|.||+-.+++.++-+++...
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~ 437 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH 437 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc
Confidence 778888432 22 22223 56664 3457788899999999999997 9999999999999999998887
Q ss_pred EEEEe
Q 013086 408 IIVCG 412 (449)
Q Consensus 408 ~~~c~ 412 (449)
++.|-
T Consensus 438 VVNCL 442 (559)
T KOG1334|consen 438 VVNCL 442 (559)
T ss_pred eEecc
Confidence 77773
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-16 Score=149.82 Aligned_cols=276 Identities=16% Similarity=0.157 Sum_probs=181.8
Q ss_pred EeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce-----eeeeecCCCCCCCCCcccceeEE
Q 013086 101 WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGM 175 (449)
Q Consensus 101 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~ 175 (449)
|+.+ +..+..+ ..|...|..++.++..+.+|++|+.||+|++|+.+.-.. ......+. ....+.++
T Consensus 1034 W~p~-G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-------~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-------EGSRVEKV 1104 (1431)
T ss_pred CCcc-ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-------cCCceEEE
Confidence 4443 3334444 568889999999887569999999999999999864221 11122111 22348899
Q ss_pred EEecCCCEEEEEcCCCeEEEEECCCCCCccceE------EeecCCCceEEEEEcCCCCC-EEEEEeCCCeEEEEEccCCC
Q 013086 176 DINPEKGVVLVADNFGFLYLVDARTNSRSGEAI------LIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 248 (449)
...+.+..+|+++.||.|.+.++.......... .....+.-+..-++...... .++.+..-+.|..||+++..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 999999999999999999999987732211110 11122222333344443344 78888889999999999866
Q ss_pred CCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEE
Q 013086 249 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 328 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (449)
....++.....+.|++++.+|.+.+++.|+..|.+.+||++.+..+. +..+..+..+..+..+|..+.....+
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~-------sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL-------SWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee-------cccCcccCCcceEEeeccCCCCceEE
Confidence 65555544566889999999999999999999999999998766532 22333333333455555554344444
Q ss_pred EcceecccCCCCCCcceEEEECCCceEEEEEecCcc----------------ceecee-eecCCCCcEEeecC-CCeEEE
Q 013086 329 IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI----------------TTISPV-NKLHPRDDVLASGS-SRSIFI 390 (449)
Q Consensus 329 ~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~v~~v-~~~~~~~~~l~s~s-dg~i~i 390 (449)
.+ +.+..+.|.+|++.+|.....+..... ..+..+ ..+...+.++.+|+ |..|+.
T Consensus 1258 s~-------~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1258 SA-------GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRK 1330 (1431)
T ss_pred Ee-------cccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceee
Confidence 32 122678899999999977776653310 001000 02333456777777 999999
Q ss_pred EcCCCchhh
Q 013086 391 WRPKEKSEL 399 (449)
Q Consensus 391 w~~~~~~~~ 399 (449)
||....+..
T Consensus 1331 wD~~~p~~s 1339 (1431)
T KOG1240|consen 1331 WDPTRPEIS 1339 (1431)
T ss_pred ccCCCcccc
Confidence 999876644
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.9e-16 Score=130.48 Aligned_cols=206 Identities=18% Similarity=0.225 Sum_probs=145.3
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
..++++...|+|++||..+++.+..+..++.. +..+.|.. ....+.+++.||.|++||++.........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~---------~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT---------TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc---------ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 56888888999999999999999988876654 66777766 46789999999999999999877654432
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeC----CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcE
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRL 283 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 283 (449)
.....+.+..+++.+- +.+++++|+. +-.|.+||+|..+..-....-.|...|+++.|+| +.++|++||.||.+
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 2222234677777765 6778888764 6689999999755521111126999999999999 77899999999999
Q ss_pred EEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 284 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
.|||+....-. -...+.++...++-.+.|........+ +-+...+..+|+++.+.....+..+
T Consensus 191 nlfD~~~d~Ee-----DaL~~viN~~sSI~~igw~~~~ykrI~-----------clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 191 NLFDTKKDNEE-----DALLHVINHGSSIHLIGWLSKKYKRIM-----------CLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred EeeecCCCcch-----hhHHHhhcccceeeeeeeecCCcceEE-----------EEEccCceeEEEccCCChhhcccCc
Confidence 99999654211 111122222233346777766322211 2345677899999998866655433
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=3.5e-17 Score=145.36 Aligned_cols=236 Identities=17% Similarity=0.238 Sum_probs=160.4
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccce----EEee
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEA----ILIH 211 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~ 211 (449)
+..|.|-||+++..-.+.. ....+......|+.+.|.| |...|++++.||.|++|.+..+...... ....
T Consensus 600 g~gG~iai~el~~PGrLPD-----gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPD-----GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred CCCceEEEEEcCCCCCCCc-----ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence 4578999999875332211 1112222334489999999 6779999999999999998775432211 1233
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.|...|+++.|+|.-.+.|++++.|.+|++||+++...... ..+|.+.|..++|||+|+.+++.+.||.|++|+.+.+
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~--l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR--LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe--eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 45558999999998889999999999999999998666333 3579999999999999999999999999999999877
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceec-ccCCCCCCcceEEEECCCce--EEEEEecCc-ccee
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS-ENYNGAALHPIDFIDITTGQ--LVAEVMDPN-ITTI 367 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~-~~~v 367 (449)
+.-- ...........-++.|.-+ |+++. ..+......+|.+||..+-. .+.+..-.- ...+
T Consensus 753 e~pv------~Eg~gpvgtRgARi~wacd---------gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L 817 (1012)
T KOG1445|consen 753 EQPV------YEGKGPVGTRGARILWACD---------GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL 817 (1012)
T ss_pred CCcc------ccCCCCccCcceeEEEEec---------CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc
Confidence 5411 1111001111225666665 66655 33466777889999987543 333322111 1111
Q ss_pred ceeeecCCCCcE-EeecC-CCeEEEEcCCCc
Q 013086 368 SPVNKLHPRDDV-LASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 368 ~~v~~~~~~~~~-l~s~s-dg~i~iw~~~~~ 396 (449)
.. .+.+|... +++|- |..|.+|.+-..
T Consensus 818 vP--~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 818 VP--HYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cc--cccCCCceEEEecCCCceEEEEEecCC
Confidence 11 57777665 45565 999999986543
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=147.01 Aligned_cols=252 Identities=12% Similarity=0.115 Sum_probs=179.5
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
+.......+.+|+||++.|+|++|+.+| +.+|+|+.|..|.+|+..-... +.-.|+..|.|+.|+|- ...|++++
T Consensus 38 yD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFNP~-~h~LasCs 112 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFNPI-THQLASCS 112 (1081)
T ss_pred EeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce---eeeccCCeeeEeecCch-HHHhhhcc
Confidence 3344556678999999999999999999 6899999999999998654322 22459999999999999 88999998
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
-+ ..-+|.......... .....+.+++|..||.+++.|-.+|+|.+-+-... ....+....+..++|
T Consensus 113 Ls-dFglWS~~qK~V~K~-----------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 113 LS-DFGLWSPEQKSVSKH-----------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKIERPGGSNSPI 179 (1081)
T ss_pred hh-hccccChhhhhHHhh-----------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEEeCCCCCCCCc
Confidence 64 477898765432211 11234899999999999999999999998754332 222222223355689
Q ss_pred EEEEEcCCCC----CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 218 VGLHCNPIQP----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 218 ~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.+++|+|..+ ..+++.....++.+|.+.....++ -. ...-...|+.+-++|.+++.|+.|+.+.+|--. |-.
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-Gvr 255 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-DR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVR 255 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-cc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeE
Confidence 9999999433 478888888888888875322211 11 233446789999999999999999999999743 222
Q ss_pred CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 294 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
+. ....++.+ ++++...|+ +++++ .|..||+|--|++.
T Consensus 256 LG------Tvg~~D~W--IWtV~~~PN---------sQ~v~---~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 256 LG------TVGEQDSW--IWTVQAKPN---------SQYVV---VGCQDGTIACYNLI 293 (1081)
T ss_pred Ee------ecccccee--EEEEEEccC---------CceEE---EEEccCeeehhhhH
Confidence 11 11222222 246677777 66666 68899999888863
No 195
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=9e-16 Score=137.29 Aligned_cols=294 Identities=18% Similarity=0.208 Sum_probs=183.8
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCc
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 168 (449)
+++-..++.|.|.|..+.+.+..+.. .......+.|+|+ ++++++++.||.|.++|+.+++.+..+.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~------- 79 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVGGN------- 79 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecCCC-------
Confidence 35566789999999999888888853 3333455789999 99999999999999999999999988876543
Q ss_pred ccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeec----CCCceEEEEEcCCCCC-EEEEEeCCCeEEEE
Q 013086 169 WRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR----KGSKVVGLHCNPIQPE-LLLSCGNDHFARIW 242 (449)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw 242 (449)
..++++++||++++++. ..+.+.++|.++.+....+..... ...++.++..+| ... ++++.-..+.|.+.
T Consensus 80 ---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 80 ---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp ---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEE
T ss_pred ---cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEE
Confidence 78899999999998875 688999999999877654322211 234677888888 555 55555556889888
Q ss_pred EccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCCCCC-----------ccceecCC-----
Q 013086 243 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPS-----------REIVHSHD----- 305 (449)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~-----------~~~~~~~~----- 305 (449)
|....... ...............|+|++++++++ ...+.|-++|..++++.... ....+...
T Consensus 156 dy~d~~~~-~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~ 234 (369)
T PF02239_consen 156 DYSDPKNL-KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA 234 (369)
T ss_dssp ETTTSSCE-EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred Eecccccc-ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence 87764321 22233445567789999999988775 44678999998877552200 00000000
Q ss_pred ----CCc--------------------------cccceeeeeccCCCCCceEEEcceeccc-CCCCCCcceEEEECCCce
Q 013086 306 ----FNR--------------------------HLTPFRAEWDPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 306 ----~~~--------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~d~~i~iwd~~~~~ 354 (449)
... ....+-+.-+|+ ++++... +.+...++|.++|..+.+
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~---------s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPD---------SRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT----------SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCC---------CccEEeeccCCCCCceEEEEECcCcc
Confidence 000 000001122222 3444332 345567899999999998
Q ss_pred EEEEEecCccceeceeeecCCCCcEEeecC---CCeEEEEcCCCchhhhhhhccc
Q 013086 355 LVAEVMDPNITTISPVNKLHPRDDVLASGS---SRSIFIWRPKEKSELVEQKEEM 406 (449)
Q Consensus 355 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s---dg~i~iw~~~~~~~~~~~~~~~ 406 (449)
.+.++.......+..+ .|+++|+.+..+. ++.|.|||..+.+++.++....
T Consensus 306 ~~~~i~~~~~~~~~h~-ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHM-EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp EEE-HHHHHT--EEEE-EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--S
T ss_pred eeEEEeccCCCcEecc-EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeC
Confidence 8888764432346666 8999999877655 3589999999999888776443
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.3e-17 Score=143.57 Aligned_cols=218 Identities=18% Similarity=0.208 Sum_probs=154.0
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC---------eeeEEEecccCCceeEEEEeeCCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---------SEKIVYGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~l 133 (449)
...+.+|++|.++|.|+++.+++ ..+++|+.||+|+.|++... ..+.....||...|+.+++++. ...|
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~L 411 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRL 411 (577)
T ss_pred eeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccce
Confidence 44568999999999999999999 68999999999999966421 1233334789999999999999 8889
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceE----
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI---- 208 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---- 208 (449)
++++.||+|++|+...... .++...... ....++++.... ...++....+.-.++++........+.
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~-------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEH-------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCcccc-------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 9999999999999876555 333222111 124445544333 222333333333333333322211000
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
........+.-+.++| ...+.+++..|+.|+++|..++...... ..|...++++++.|+|.+|++++.|+.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecC-CCCeeEecccCCceecccccccccchhe--eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 0111113577888999 8899999999999999999876654333 358899999999999999999999999999998
Q ss_pred CCCCC
Q 013086 289 IFGNL 293 (449)
Q Consensus 289 ~~~~~ 293 (449)
....+
T Consensus 561 d~k~~ 565 (577)
T KOG0642|consen 561 DVKTC 565 (577)
T ss_pred cchhe
Confidence 65444
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.6e-16 Score=145.43 Aligned_cols=257 Identities=12% Similarity=0.124 Sum_probs=169.5
Q ss_pred ccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCC-----eeeEEEe------cccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 74 RRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKV-----SEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 74 ~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~-----~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
..|+.+.+-. +...++++|+.||.|+||+-... +.+.... .+..+.=.-+.|... ..+|++++.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecCCeeE
Confidence 4688888854 33468999999999999974322 1111110 111122244567777 666667676889
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCc--eE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK--VV 218 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~ 218 (449)
|+|||.........+...... .++++.-+. .|+.+++|..||.|++||.+.............|... |.
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t--------~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSST--------LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred EEEEecccceeEeecccCCCc--------cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 999999988777766554332 266655433 4689999999999999999876653333333444434 99
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCC---CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
.+.+.+..-..|++|+.+|.|++||++.......+....| .+..+++..++....+|+|+. +.|+||++...++ .
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~ 1338 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-N 1338 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-c
Confidence 9999883333599999999999999997533222222222 345999999999999999998 8999999964433 2
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
..+.. ...-........++.|+|. --.++ .|+.|+.|.||......
T Consensus 1339 ~~k~n-~~F~~q~~gs~scL~FHP~---------~~llA---aG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYN-PGFMGQRIGSVSCLAFHPH---------RLLLA---AGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccC-cccccCcCCCcceeeecch---------hHhhh---hccCCceEEEeecCCcC
Confidence 22211 0001112223357888887 33344 68999999999876543
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-15 Score=124.68 Aligned_cols=299 Identities=14% Similarity=0.170 Sum_probs=186.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
+-.+..++|++.- .-+|++..|-.|++|+-.. .....+.......|++++|-|.....|+.|+.. -|.+|.....-.
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 3457789999865 4578889999999999776 444445445667899999999977778888765 499998753221
Q ss_pred eee----eecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 153 LSL----MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 153 ~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
... ...+......+.....|++++|.+||..+++++ .+..|.+||..++....-. ....+.+.-+.|+| ++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSP-DG 250 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcC-CC
Confidence 111 111111111122225699999999999999886 5679999999998765321 23334688999999 99
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC----CCCC--ccce
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL----DSPS--REIV 301 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~--~~~~ 301 (449)
.+|++++-|+..++|+....-...... -..+.|...+|+|+|++|+.+.. |.-++|.+..... ..+. ....
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred CEEEEecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence 999999999999999655422222211 13458999999999998776553 3455665543221 1000 0111
Q ss_pred ecCCCC------c----cccceeeeeccCCCCCceEEEcceecccCCCCC-----CcceEEEECCCceEEEEEe-----c
Q 013086 302 HSHDFN------R----HLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-----LHPIDFIDITTGQLVAEVM-----D 361 (449)
Q Consensus 302 ~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~-----~ 361 (449)
...++. + ...+-+++|+|. |.|++..+-|.. ...|.+||....-.+.-.. +
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDps---------GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPS---------GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCC---------CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 000000 0 112246899998 666654443332 3557788876654443331 2
Q ss_pred CccceeceeeecCC---CCcEEeecC-CCeEEEEcCC
Q 013086 362 PNITTISPVNKLHP---RDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 362 ~~~~~v~~v~~~~~---~~~~l~s~s-dg~i~iw~~~ 394 (449)
.+ . ..+ .|+| ++.+|..+= .|.+.-|.+.
T Consensus 399 e~-P--~~I-sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 399 EY-P--AYI-SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CC-C--ceE-EeeecccCCcEEEEEeccCceEeeeeE
Confidence 22 1 112 4555 456666655 6887777653
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6e-16 Score=129.84 Aligned_cols=261 Identities=15% Similarity=0.179 Sum_probs=171.8
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|.+.|+++.|+.+ +++|++|+.|..+++|.++.....++ ..+-...++.+...|.+++|....+.+++|..+++|
T Consensus 53 ~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 579999999999999 99999999999999999864322111 011112334444569999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC-CCCceeecCCCCcEEEEEEcC-CC
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAYFSP-SG 271 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~ 271 (449)
.+.|+.+.+.+... .-....+.|+.+..+| -.+.|++.+.++.|.+||.+... .+..+...........+.|+| ..
T Consensus 130 I~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVA-NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccceeeeee-cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987654321 2222345899999999 68899999999999999998765 333333335566788899999 56
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 350 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~ 350 (449)
.+|++.+..+-+.+||.+.... +.-.......+....+ -+.+.|+|.. ..+. +--....-.+||+
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~--~~~~~~~~~~L~~~~~~~M~~~~~~~G---------~Q~m---siRR~~~P~~~D~ 273 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQAR--PVYQRSMFKGLPQENTEWMGSLWSPSG---------NQFM---SIRRGKCPLYFDF 273 (609)
T ss_pred eeEEeccccCCCCceeeccccc--hHHhhhccccCcccchhhhheeeCCCC---------Ceeh---hhhccCCCEEeee
Confidence 7888999999999999975432 1100000111111111 1357888873 2221 0111112336777
Q ss_pred CCceEEEEEecCcc------ceeceeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 351 TTGQLVAEVMDPNI------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 351 ~~~~~~~~~~~~~~------~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
.+.++...-..|.. ..+.++ +|..|. -+++|+ +-.|++|.+..
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~-~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSM-TFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeee-eeecce-eeeccCcccceEEEecCC
Confidence 66544322222221 123333 455444 489999 78999998753
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.2e-15 Score=116.45 Aligned_cols=206 Identities=20% Similarity=0.281 Sum_probs=150.6
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee-------EEEecccC-----CceeEEEEeeC
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-------IVYGNIHS-----CIVNNIRFNPT 128 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~-------~~~~~~h~-----~~v~~~~~~~~ 128 (449)
|.+..+-..++|.++|+.++|.. .+|++|+ ||.|+=|.+...... ......|. -.|+++-..|.
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 34445566799999999999983 4577776 599999987643220 11111122 35899999998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 129 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
.+-++.++.|+.++-||+++|+..+.++.+... +.++.--.....+++|++||++++||.++.+....+.
T Consensus 126 -enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY---------vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 126 -ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY---------VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred -CCcEEEecCCeEEEEEEecCCEEEEEEcCCcce---------eeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 555666668999999999999999999877654 8888876777889999999999999999987654321
Q ss_pred Ee-------ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 209 LI-------HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 209 ~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
.. ..-+..|.+++.+ ..+|++|+ ...+.+|+++..+....+ ...+.+..+.|. ...+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~---edWlvCGg-Gp~lslwhLrsse~t~vf---pipa~v~~v~F~--~d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSSESTCVF---PIPARVHLVDFV--DDCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEecc---CceEEecC-CCceeEEeccCCCceEEE---ecccceeEeeee--cceEEEecccc
Confidence 11 1123457777764 47888876 468999999986654444 456778888884 55788888888
Q ss_pred cEEEEeCC
Q 013086 282 RLRIWDSI 289 (449)
Q Consensus 282 ~i~vwd~~ 289 (449)
.+.-|.+.
T Consensus 267 ~v~~~~l~ 274 (325)
T KOG0649|consen 267 HVQSYTLN 274 (325)
T ss_pred ceeeeeec
Confidence 99999874
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=5.8e-16 Score=135.02 Aligned_cols=264 Identities=15% Similarity=0.237 Sum_probs=168.8
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEE-eCcCCeeeEEEecccCCceeEEEEeeC------CCCeEEEEeCCCeEE
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVW-DFYKVSEKIVYGNIHSCIVNNIRFNPT------NDGTVYAASSDGTVS 143 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~~l~s~~~dg~v~ 143 (449)
-|...|.|+.|+.+. .++.+++ |..+.+| ++.+....... .....-.+.+..-+. +.+.|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~e-ei~~~~d-Dh~~~~~~~~~~~s~~~~~-~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIYFVSD-DHQIFKWSDVSRDSVEVAK-LPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccc-eEEEecc-CceEEEeecccchhhhhhh-CCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 477778899999877 4555555 5555555 54433221111 111111111111111 145788889999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+.+- .++....+..+.. .+.+-.|+|+|.-|+++++||.|++|.-...-. .. ......+|.|++|.
T Consensus 89 il~k-~~rVE~sv~AH~~---------A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR-St---l~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAA---------AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR-ST---VVQNEESIRCARWA 154 (737)
T ss_pred Eecc-cchhhhhhhhhhh---------hhhhcccCCCCceeeeecCCceEEEEeccchHH-HH---HhhcCceeEEEEEC
Confidence 8863 3444444444333 388889999999999999999999998654321 11 12233479999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
|...+.+.+.+ +.+.|=.+... .+.++-..|.+-|.++.|++...++++|++|-..++||.....+.. +
T Consensus 155 p~S~~vl~c~g--~h~~IKpL~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~-------S 223 (737)
T KOG1524|consen 155 PNSNSIVFCQG--GHISIKPLAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT-------S 223 (737)
T ss_pred CCCCceEEecC--CeEEEeecccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc-------C
Confidence 95555555543 55666665532 3345545799999999999999999999999999999975433321 1
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
... ...+.+++|+|+ ..|+ +|...+.+ +..+..+.+..+ +||+||..++.|
T Consensus 224 ~~~--ey~ITSva~npd---------~~~~-------------v~S~nt~R----~~~p~~GSifnl-sWS~DGTQ~a~g 274 (737)
T KOG1524|consen 224 AAE--EYAITSVAFNPE---------KDYL-------------LWSYNTAR----FSSPRVGSIFNL-SWSADGTQATCG 274 (737)
T ss_pred Chh--ccceeeeeeccc---------ccee-------------eeeeeeee----ecCCCccceEEE-EEcCCCceeecc
Confidence 111 112247889987 1111 33333222 556666788888 999999999998
Q ss_pred C-CCeEEEE
Q 013086 384 S-SRSIFIW 391 (449)
Q Consensus 384 s-dg~i~iw 391 (449)
. .|.+.+=
T Consensus 275 t~~G~v~~A 283 (737)
T KOG1524|consen 275 TSTGQLIVA 283 (737)
T ss_pred ccCceEEEe
Confidence 8 7777553
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=128.40 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=169.3
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----eeEEEecccCCceeEEEEeeCCCCeEEEEeCC--C
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--G 140 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g 140 (449)
....+...+|..++.. +| .|++|-.+|.+.+|....+. .+..+ .....+..+.-++.....+++|+.. .
T Consensus 99 ~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 99 KTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccccccccccchhhc-CC--EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhccc
Confidence 3445566777777765 34 47888889999999987432 22222 1345677777777745667779988 8
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.+.+||++..+.+..-...++..-+......++.+.|-+. ...|++++.-+.+++||.+..+.+...+... ..+++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is 251 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPIS 251 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcce
Confidence 8999999998777666655555556666667889999998 8899999999999999999877654433333 44899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++...| .++++++|...|.+..||++.+...... ..+..+.|.+|..+|.+++|++++.|..+||+|+.+.++
T Consensus 252 ~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 252 STGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeeecC-CCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999999 9999999999999999999976553331 125788999999999999999999999999999988655
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.3e-14 Score=130.34 Aligned_cols=253 Identities=12% Similarity=0.170 Sum_probs=155.0
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEEEEeCCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETG 150 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~ 150 (449)
.+....++++|+++.+++++..++.|.+|++.. +................++|+|+ +++|++++. ++.|.+|++.+.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCC
Confidence 355778899999954444455688999999973 32211111123445778999999 887777764 889999999743
Q ss_pred c-eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccc----eEEeecCCCceEEEEEcC
Q 013086 151 L-ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGE----AILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----~~~~~~~~~~v~~~~~~~ 224 (449)
. .......... ......++++|+++++++++ .++.|.+||+.+...+.. .... ..+.....++|+|
T Consensus 113 g~~~~~~~~~~~-------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p 184 (330)
T PRK11028 113 GIPVAPIQIIEG-------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP 184 (330)
T ss_pred CCCCCceeeccC-------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC
Confidence 2 2111111000 01267788999999886654 568999999986432211 1111 1233567899999
Q ss_pred CCCCEEEEEeC-CCeEEEEEccCCC-CCCceeec---C----CCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCC
Q 013086 225 IQPELLLSCGN-DHFARIWDIRRLE-AGSSLCDL---P----HKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNLD 294 (449)
Q Consensus 225 ~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~---~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~ 294 (449)
++++++++.. ++.|.+|++.... ....+... + +......+.++|++++|+++.. ++.|.+|++......
T Consensus 185 -dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 185 -NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred -CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 8888877766 8999999997321 11112111 1 1122346889999999998854 789999998643211
Q ss_pred CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 295 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
. ........ ...+..+.++|+ |+++.. +...+++|.+|++.
T Consensus 264 ~---~~~~~~~~--~~~p~~~~~~~d---------g~~l~v--a~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 L---SFEGHQPT--ETQPRGFNIDHS---------GKYLIA--AGQKSHHISVYEID 304 (330)
T ss_pred E---EEeEEEec--cccCCceEECCC---------CCEEEE--EEccCCcEEEEEEc
Confidence 0 00000000 012235677777 666652 23347899999874
No 204
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=6.7e-16 Score=130.11 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=148.6
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCc--------C-----C--eeeEEEecccCCceeEEEEeeC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY--------K-----V--SEKIVYGNIHSCIVNNIRFNPT 128 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~--------~-----~--~~~~~~~~~h~~~v~~~~~~~~ 128 (449)
.....|..|..+|+++.|+|+| .+||+|+.+|.|.+|... + . ........+|...|..++|+|+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 3457899999999999999999 689999999999999865 2 1 1233344679999999999999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC------------------------------------------
Q 013086 129 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP------------------------------------------ 166 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------------------ 166 (449)
+.++++++.|.++++||+..|+.......+....++.
T Consensus 135 -~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 135 -SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred -CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 9999999999999999999998877664433221000
Q ss_pred --------------CcccceeEEEEecCCCEEEEEcC----C-----CeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 167 --------------RTWRMLYGMDINPEKGVVLVADN----F-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 167 --------------~~~~~i~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
........++|+|+|.++++... . ...++++-...+.+. ........+...+.++
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFS 291 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEee
Confidence 00001233456667766666421 1 122344333222111 1111112233344443
Q ss_pred CC-----------------CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 224 PI-----------------QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 224 ~~-----------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
|. -...++.++ ...|++||..+......+.. -|-..|+.++|+++|..|+..|.||...+-
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 31 122344554 45799999876555433332 377899999999999999999999999988
Q ss_pred eCCCCCC
Q 013086 287 DSIFGNL 293 (449)
Q Consensus 287 d~~~~~~ 293 (449)
.+...++
T Consensus 370 tfe~~el 376 (434)
T KOG1009|consen 370 TFEPWEL 376 (434)
T ss_pred EEcchhc
Confidence 8877665
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=7.5e-17 Score=138.03 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=161.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.-+.+.|+.+| +.|+.|+..|.|..+|+.+......+. -...|.++.|..+ .++|+++- ...++|||-. |..+.
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQ-K~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN-EQFFAVAQ-KKYVYVYDNN-GTELH 204 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc-hHHHHhhh-hceEEEecCC-CcEEe
Confidence 34578899999 678888899999999999988877774 5678999999987 77776665 5689999965 44444
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.+..+. .+..+.|-|.--+|++++..|.+..-|+.+++.+..+ ....+.+..++-+| -+..+-+|.
T Consensus 205 Clk~~~----------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~---~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 205 CLKRHI----------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI---RTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ehhhcC----------chhhhcccchhheeeecccCCceEEEeechhhhhHHH---HccCCccchhhcCC-ccceEEEcC
Confidence 443322 3888999999999999999999999999999887654 23344788899999 888999999
Q ss_pred CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 235 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..|+|.+|.....+. ....+.|.++|.+|++.++|.|++|.+.|..++|||++.-..
T Consensus 271 snGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred CCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 999999999876444 444557999999999999999999999999999999987653
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=129.52 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=131.0
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeec
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 158 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 158 (449)
.+|||+| +++|+++.- .+.|-|..+.+....+. .-..|..+.|..+.-..|.....++.|.+|++...+....+..
T Consensus 14 c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCG-NYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCC-Ceeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 6799999 789998864 78888888766554443 3467888999988334455566789999999998888877766
Q ss_pred CCCCCCCCCcccceeEEEEecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-
Q 013086 159 NPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND- 236 (449)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 236 (449)
...+ +.++.|+|+|+.++. ..-+-.|.+|.+.+.+.. .+....+ .+..++|+| ++++.+.++..
T Consensus 90 g~ag---------ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~--~~kg~~f~~-dg~f~ai~sRrD 155 (447)
T KOG4497|consen 90 GQAG---------LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKT--NVKGYAFHP-DGQFCAILSRRD 155 (447)
T ss_pred CCCc---------ceeeeECCCcceEeeeecceeEEEEEEeccceeE--Eeccccc--CceeEEECC-CCceeeeeeccc
Confidence 5544 899999999976554 566789999999886543 1122222 568899999 99988877542
Q ss_pred -----------------------------------CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 237 -----------------------------------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 237 -----------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
..+.+||.- ....+......-.+..++|+|.+++|++|+.|+
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~---Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV---LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch---hhheeeeeeeccceeEEEeccccceEEeeccch
Confidence 123334321 011111112234577778888888888888888
Q ss_pred cEEEEeCC
Q 013086 282 RLRIWDSI 289 (449)
Q Consensus 282 ~i~vwd~~ 289 (449)
.+|+.+--
T Consensus 233 ~lrvlnh~ 240 (447)
T KOG4497|consen 233 MLRVLNHF 240 (447)
T ss_pred hhhhhcee
Confidence 88776543
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.1e-14 Score=117.57 Aligned_cols=238 Identities=13% Similarity=0.153 Sum_probs=155.6
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccC--CceeEEEEeeCCCCeEEE-EeC------CCeEEEEe
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS--CIVNNIRFNPTNDGTVYA-ASS------DGTVSCTD 146 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s-~~~------dg~v~iwd 146 (449)
..+++|+.|. .-++.|..+ -.+||+.+..+..... +.+. -.+.-+-|- .++|+. |+. -..|.|||
T Consensus 8 ~lsvs~NQD~-ScFava~~~-Gfriyn~~P~ke~~~r-~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDH-SCFAVATDT-GFRIYNCDPFKESASR-QFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCC-ceEEEEecC-ceEEEecCchhhhhhh-ccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEe
Confidence 4559999987 457777655 4999998764332222 1122 223333343 334443 332 25799999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
=...+++.++.+... |.++.+.++ .|++. ..+.|++|.....-.....+.....+....+++-+. +
T Consensus 82 D~k~~~i~el~f~~~----------I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~ 147 (346)
T KOG2111|consen 82 DLKERCIIELSFNSE----------IKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-N 147 (346)
T ss_pred cccCcEEEEEEeccc----------eeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-C
Confidence 777777777765443 888888765 34443 347899999874332222222222222344443333 3
Q ss_pred CCEEEE-EeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 227 PELLLS-CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 227 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
..+||. |-.-|.|+|-|+.............|.+.|.|++++.+|.++|++|..|++
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL---------------------- 205 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL---------------------- 205 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE----------------------
Confidence 445554 345689999999876654344455899999999999999999999988753
Q ss_pred CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec-CccceeceeeecCCCCcEEeecC
Q 013086 306 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-PNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
|||||..+|+.+..++. .....++++ +|||+..+||++|
T Consensus 206 ---------------------------------------IRIFdt~~g~~l~E~RRG~d~A~iy~i-aFSp~~s~LavsS 245 (346)
T KOG2111|consen 206 ---------------------------------------IRIFDTEDGTLLQELRRGVDRADIYCI-AFSPNSSWLAVSS 245 (346)
T ss_pred ---------------------------------------EEEEEcCCCcEeeeeecCCchheEEEE-EeCCCccEEEEEc
Confidence 55666666777777653 344678888 9999999999999
Q ss_pred -CCeEEEEcCCC
Q 013086 385 -SRSIFIWRPKE 395 (449)
Q Consensus 385 -dg~i~iw~~~~ 395 (449)
-|+|.|+.+..
T Consensus 246 dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 246 DKGTLHIFSLRD 257 (346)
T ss_pred CCCeEEEEEeec
Confidence 59999998765
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-14 Score=128.39 Aligned_cols=283 Identities=14% Similarity=0.174 Sum_probs=192.8
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
+|...-+.|..+|||..++|||...-.|++||+.+....... .-....|.-.-.+.+ -..++.--.|.+|-+...- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae~V~feiLsDD-~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-cccccceeEEEeccc-hhhheEeecCceeeehhhc-C
Confidence 477888999999999888899999999999999886655443 123344555555555 5555555668888765432 2
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
.. ..+..+. .-..++++.-.--|+.++....|+-+++..+..+..+ ....+.++++..++ ...+|
T Consensus 126 ~h-y~~RIP~----------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 126 RH-YRTRIPK----------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ee-eeeecCc----------CCccccccCCCccEEEeecCcceEEEEcccccccccc---ccccccceeeeecC-ccceE
Confidence 21 1222221 1334455443444666666678999999998876433 23335799999999 88899
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeec----CCC-----CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDL----PHK-----RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
++|+.+|.|..||.+.......+... .|. ..|+++.|+.+|-.+++|..+|.+.|||+++.+. +
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-------l 263 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-------L 263 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-------e
Confidence 99999999999999875443332211 122 3499999999999999999999999999987664 2
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
..........+..+.|.+.+....+. ......++|||-.+|+....+.... .+..+ ++-|++-++.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~-----------S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~-C~~p~sGm~f 329 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVV-----------SMDKRILKIWDECTGKPMASIEPTS--DLNDF-CFVPGSGMFF 329 (703)
T ss_pred eecccCCccceeeecccccCCCceEE-----------ecchHHhhhcccccCCceeeccccC--CcCce-eeecCCceEE
Confidence 33344444555577887764322222 2344668999999999988876543 35555 6778888888
Q ss_pred ecC-CCeEEEEc
Q 013086 382 SGS-SRSIFIWR 392 (449)
Q Consensus 382 s~s-dg~i~iw~ 392 (449)
+|. ++.+..|=
T Consensus 330 ~Ane~~~m~~yy 341 (703)
T KOG2321|consen 330 TANESSKMHTYY 341 (703)
T ss_pred EecCCCcceeEE
Confidence 888 55554443
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=4.1e-17 Score=149.21 Aligned_cols=251 Identities=19% Similarity=0.218 Sum_probs=184.0
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|...|.|+.|... +.++++|+.|..++||..+++.++.....+... ++.++.+.+...+++++.|..|
T Consensus 187 lgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d---------itdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGD---------ITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred Hhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccc---------cchhccchhhhhhhhcccCceE
Confidence 579999999999998 999999999999999999999999888776554 8999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc--eeecCCCCcEEEEEEcCCC
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS--LCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~ 271 (449)
++|-+..+.++. ...+|.+.|++++|+| ..+.+.||++++||.+-...... -..+.....+.++.|..++
T Consensus 257 rvWrl~~~~pvs---vLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 257 RVWRLPDGAPVS---VLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEecCCCchHH---HHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 999999988764 3345666899999999 33778899999999872111000 0011234567788888889
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.-+++++.|+.-..|.+..-.... . .+.|....... ..+.. ++-.+..+.+|++.
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~--~---------------~lif~t~ssd~-----~~~~~---~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRS--N---------------LLIFVTRSSDL-----SSIVV---TARNDHRLCVWNLY 383 (1113)
T ss_pred cccccccCCcccccchhhHhhhhc--c---------------ceEEEeccccc-----cccce---eeeeeeEeeeeecc
Confidence 999999999999988774221100 0 01111100000 01111 34556678899999
Q ss_pred CceEEEEEecCccceeceeeecCCCCcEEe-ecC-CCeEEEEcCCCchhhhhhh-ccceEE
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDDVLA-SGS-SRSIFIWRPKEKSELVEQK-EEMKII 409 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~-s~s-dg~i~iw~~~~~~~~~~~~-~~~~~~ 409 (449)
+|.+.+.+.+|. ..+..+ .++|-...++ +++ ||...|||+-.|.+++... +|...+
T Consensus 384 ~g~l~H~l~ghs-d~~yvL-d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 384 TGQLLHNLMGHS-DEVYVL-DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cchhhhhhcccc-cceeee-eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 999999888886 566666 8999665554 577 9999999999988776543 344443
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.1e-15 Score=125.66 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=175.0
Q ss_pred cCCceeEEEEeeCCCC-eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 116 HSCIVNNIRFNPTNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
-...|..++|.-++.. .+...+.+..+..+.+............. ...-....|..++. .+..|+++..+|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~---~~~l~~~~I~gl~~--~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK---TVSLGTKSIKGLKL--ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc---ccccccccccchhh--cCCEEEEEecCCcEE
Confidence 3456788888765333 34444467777777777665544331000 00001112333332 345788889999999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC--CeEEEEEccCCCCCCceeec-------CCCCcEEEE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--HFARIWDIRRLEAGSSLCDL-------PHKRVVNSA 265 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~ 265 (449)
+|....+.........-..+..+..+.-++....++++|+.. ..+.|||+.+.+....-... .-.-.++.+
T Consensus 129 ~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 999986553322222223334688888888777888889988 88999999865321111111 123356788
Q ss_pred EEcCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc
Q 013086 266 YFSPS--GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 266 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
.|-+. ...|++++.-+.+++||.+.++. |.. ...+..+. ...+...|. |+++. +|..-+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~----~fd~~E~~-is~~~l~p~---------gn~Iy---~gn~~g 269 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVA----QFDFLENP-ISSTGLTPS---------GNFIY---TGNTKG 269 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCc--cee----EeccccCc-ceeeeecCC---------CcEEE---Eecccc
Confidence 99987 88999999999999999986543 211 11111110 112233333 56555 688889
Q ss_pred ceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 344 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
.+..||++.++........-.+.+..+ ..+|.+++|++++ |..|||+|+++.+++...+..+.
T Consensus 270 ~l~~FD~r~~kl~g~~~kg~tGsirsi-h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGCGLKGITGSIRSI-HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR 333 (412)
T ss_pred hhheecccCceeeccccCCccCCcceE-EEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc
Confidence 999999999999888555545788888 7899999999999 99999999999888877665544
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.4e-15 Score=139.27 Aligned_cols=235 Identities=15% Similarity=0.174 Sum_probs=153.4
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---CeEEEEeCCCCceeeeeecCCCCCCCCCcccc
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 171 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (449)
+..|.+||....... .+ ..|...+....|+|+ ++.|+.++.+ ..|++||+.+++......... .
T Consensus 183 ~~~i~i~d~dg~~~~-~l-t~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----------~ 249 (429)
T PRK01742 183 PYEVRVADYDGFNQF-IV-NRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----------H 249 (429)
T ss_pred eEEEEEECCCCCCce-Ee-ccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----------c
Confidence 468999998766533 33 457788999999999 8888777643 479999998876433222111 1
Q ss_pred eeEEEEecCCCEEEEEc-CCCeE--EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEccCC
Q 013086 172 LYGMDINPEKGVVLVAD-NFGFL--YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRL 247 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 247 (449)
....+|+||++.|+.+. .+|.+ ++||+.++... ....+...+....|+| ++..|+..+ .+|...||++...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 34679999999888764 67755 45566554421 2233344678899999 888766554 5788888887543
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceE
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 327 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (449)
.... ....+.. ....|+|+|++|+..+.++ +.+||+.+++..... .... .....|+|+
T Consensus 325 ~~~~--~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt------~~~~----~~~~~~sPd------- 382 (429)
T PRK01742 325 GGGA--SLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS------STFL----DESPSISPN------- 382 (429)
T ss_pred CCCe--EEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec------CCCC----CCCceECCC-------
Confidence 2211 1223333 4578999999998888765 666999887642110 0111 124678998
Q ss_pred EEcceecccCCCCCCcceEEEEC--CCceEEEEEecCccceeceeeecCCC
Q 013086 328 VIGRYISENYNGAALHPIDFIDI--TTGQLVAEVMDPNITTISPVNKLHPR 376 (449)
Q Consensus 328 ~~g~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~v~~~~~~ 376 (449)
|++++ .++.++.+.+|++ .+|+.+..+..+. ..+... +|+|-
T Consensus 383 --G~~i~---~~s~~g~~~~l~~~~~~G~~~~~l~~~~-g~~~~p-~wsp~ 426 (429)
T PRK01742 383 --GIMII---YSSTQGLGKVLQLVSADGRFKARLPGSD-GQVKFP-AWSPY 426 (429)
T ss_pred --CCEEE---EEEcCCCceEEEEEECCCCceEEccCCC-CCCCCc-ccCCC
Confidence 66665 3455677777775 3688888887655 455555 78874
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=2.8e-15 Score=122.68 Aligned_cols=214 Identities=15% Similarity=0.193 Sum_probs=161.1
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.+.--..+|+|.+|++++ ..+|.+.....|.||...... .....+..|...|+.+.|+|. .+.|++|+.|..-++|
T Consensus 5 ~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVW 82 (361)
T ss_pred EeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCcccc
Confidence 343446789999999999 678998888999999987755 333334779999999999999 9999999999999999
Q ss_pred eC-CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc--cceEEeecCCCceEEEEE
Q 013086 146 DL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS--GEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 146 d~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~ 222 (449)
.. ..++...++.+. +.....+++.|+|.++.|++|+....|.+|-.+....- .+. ......+.|+++.|
T Consensus 83 ~~~~~~~WkptlvLl-------RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh-ikkPirStv~sldW 154 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLL-------RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH-IKKPIRSTVTSLDW 154 (361)
T ss_pred ccCCCCeeccceeEE-------EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh-hCCccccceeeeec
Confidence 98 444443333221 11234899999999999999999999999987764321 111 11122347999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCC---------------CCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLE---------------AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
+| ++-+|++|+.|+..+++..--.. .+..+... ...+.|..+.|+|+|..|+-.+.|..+.+-
T Consensus 155 hp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 HP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 99 99999999999999998642110 01122222 356789999999999999999999999999
Q ss_pred eCCCCC
Q 013086 287 DSIFGN 292 (449)
Q Consensus 287 d~~~~~ 292 (449)
|.....
T Consensus 234 da~~p~ 239 (361)
T KOG1523|consen 234 DAAGPS 239 (361)
T ss_pred ecCCCc
Confidence 986553
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=4e-15 Score=122.23 Aligned_cols=295 Identities=15% Similarity=0.198 Sum_probs=175.4
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
+.|.-+.|..+...+|.....++.|.+|++...+-...+ ..-..++.++.|+|++...|.+...+-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 567889999888666777788999999999988777777 4567789999999994466777777999999999886654
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC------------------------------------eEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG------------------------------------FLYLVD 197 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d 197 (449)
..- .+.. .+..++|+++|++.+..++.. .+.+||
T Consensus 128 ~~~-~pK~---------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 128 LLP-HPKT---------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred Eec-cccc---------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 332 1111 278899999999888775432 223333
Q ss_pred CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEE--------EcC
Q 013086 198 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAY--------FSP 269 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~~~ 269 (449)
.--.- .. .....+..+..++|+| .+++|++|+.|+.+++.+--+ -+.+..+.|...+..-. +++
T Consensus 198 ~~Ley---kv-~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t---Wk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 198 NVLEY---KV-YAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT---WKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred chhhh---ee-eeeeeccceeEEEecc-ccceEEeeccchhhhhhceee---eeehhhhccchhccCchhhhhhhhhcch
Confidence 21110 11 1222233588899999 999999999999999877532 23344444544333211 111
Q ss_pred CC---CEEEEeeCCCcEEEEeCCCCCCC---CCCcc--ceecCC-CCccccceeeeeccCCCCCceEEEcceecccCCCC
Q 013086 270 SG---SKILTTSQDNRLRIWDSIFGNLD---SPSRE--IVHSHD-FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA 340 (449)
Q Consensus 270 ~~---~~l~~~~~dg~i~vwd~~~~~~~---~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (449)
-. .-|-..-.|-...+|....-... .+... .....+ .+.....-.++|+++ ..|++.. +..
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D---------s~y~aTr-nd~ 339 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD---------STYAATR-NDK 339 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC---------ceEEeee-cCC
Confidence 00 00000011222223332211000 00000 000000 111122235788887 4444421 344
Q ss_pred CCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhh
Q 013086 341 ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 341 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
.-+.+-+||+...++...+...+ .|... .|+|....|+.+. ...+++|.+.-...+.
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~--piraf-~WdP~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKH--PIRAF-EWDPGRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred CCceEEEEechhhhhhhhhhhcc--ceeEE-EeCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence 55779999999888777665543 34444 6999888777766 6789999876544333
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=3e-15 Score=130.66 Aligned_cols=192 Identities=18% Similarity=0.297 Sum_probs=140.0
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
..|+.++.||.+.|.+-.. +..... ..|.+.+.+-.|+|+ +.-|++++.||.|++|.- +|-...++.....
T Consensus 76 d~~~i~s~DGkf~il~k~~-rVE~sv-~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~----- 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RVERSI-SAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE----- 146 (737)
T ss_pred ceEEEEcCCceEEEecccc-hhhhhh-hhhhhhhhhcccCCC-CceeeeecCCceEEEEec-cchHHHHHhhcCc-----
Confidence 3577778899999887433 333333 679999999999999 999999999999999974 4443333322222
Q ss_pred CcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 167 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.|+|++|.|+.+.++.+.. +.+.+=.+... ...+....|.+-|.++.|++ ..+++++|+.|-..++||...
T Consensus 147 ----~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n---~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 147 ----SIRCARWAPNSNSIVFCQG-GHISIKPLAAN---SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred ----eeEEEEECCCCCceEEecC-CeEEEeecccc---cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccC
Confidence 3999999999887766554 34555444332 34557778888999999999 999999999999999999752
Q ss_pred CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccC
Q 013086 247 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 320 (449)
Q Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (449)
...+....|..+|++++|+|+ +.++.++.. ++++=..+.| +.+.+.|+++
T Consensus 218 ---~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~G-------------------SifnlsWS~D 267 (737)
T KOG1524|consen 218 ---ANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRVG-------------------SIFNLSWSAD 267 (737)
T ss_pred ---cccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCcc-------------------ceEEEEEcCC
Confidence 223333478999999999999 667766644 5664333333 3357899998
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.4e-14 Score=118.56 Aligned_cols=229 Identities=10% Similarity=0.137 Sum_probs=157.3
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce---eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 192 (449)
-..+|+|.+|+++ ...++++.....|.||.....+. ..++..+. ..+++++|+|..+.|++++.|..
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---------~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---------KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhC---------cceeEEeecCCCCceeEccCCCC
Confidence 4578999999999 99999999999999999877652 23333222 23999999999999999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce--eecCCCCcEEEEEEcCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL--CDLPHKRVVNSAYFSPS 270 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~ 270 (449)
-++|....+..-...+.+.+.....+++.|+| .++.|++|+....|.+|-+.....--.- ....+.+.|+++.|+|+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99999954433233334445555899999999 9999999999999999987653331111 11257788999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCC-----------CccceecC-CCCccccceeeeeccCCCCCceEEEcceecccCC
Q 013086 271 GSKILTTSQDNRLRIWDSIFGNLDSP-----------SREIVHSH-DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
+-+|++|+.|+..+||..--...... ...+.... ...+. ...+.|+|. |..++ -
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw--vh~v~fs~s---------G~~la---w 223 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW--VHGVLFSPS---------GNRLA---W 223 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc--eeeeEeCCC---------CCEee---E
Confidence 99999999999999998643322211 11111111 11111 135777777 55555 3
Q ss_pred CCCCcceEEEECCCce-EEEEEecCccceecee
Q 013086 339 GAALHPIDFIDITTGQ-LVAEVMDPNITTISPV 370 (449)
Q Consensus 339 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v 370 (449)
.+.|..+.+-|..... .+..+.... -+..++
T Consensus 224 v~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~ 255 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSV 255 (361)
T ss_pred ecCCCceEEeecCCCchhccchhhcc-CCceee
Confidence 4677888888876554 333333333 344444
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-14 Score=118.34 Aligned_cols=267 Identities=16% Similarity=0.204 Sum_probs=169.6
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee----eEEEeccc------------CCceeEEEEeeCC-CCeEEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIH------------SCIVNNIRFNPTN-DGTVYA 135 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~----~~~~~~~h------------~~~v~~~~~~~~~-~~~l~s 135 (449)
.+-|.++.|..+| .+||||..+|.|.++.-..... .....+.| ...|..+.|.+++ ...++.
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4569999999999 5899999999999997654332 22222334 3468999998763 456777
Q ss_pred EeCCCeEEEEeCCCCceee---------------eeecC------------CCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 136 ASSDGTVSCTDLETGLALS---------------LMNVN------------PNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~---------------~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
.+.|.+|++|.+....... .++.+ +.......+...|.++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 7889999999886432211 00000 01111223344588999999998888765
Q ss_pred CCCeEEEEECCCCCCccceEEeecC-----CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC----CCceeec---
Q 013086 189 NFGFLYLVDARTNSRSGEAILIHRK-----GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDL--- 256 (449)
Q Consensus 189 ~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~--- 256 (449)
|-.|.+|++.-......+.....+ ..-|++..|+|...++++-.+..|+|++-|++.... .+.+...
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 568999988754433222222222 124889999998889999999999999999984221 1111111
Q ss_pred -------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC-CCCCCc--ccee-----cCCCCccccceeeeeccCC
Q 013086 257 -------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN-LDSPSR--EIVH-----SHDFNRHLTPFRAEWDPKD 321 (449)
Q Consensus 257 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~ 321 (449)
+--..|..+.|+++|+++++-.. -+|++||+.... ...... .... .-........+.++|+-+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~- 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN- 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC-
Confidence 12246888999999999997654 489999995322 111000 0000 000111122356778766
Q ss_pred CCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 322 PSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
+.++. +|+..+.+++++...|.
T Consensus 341 --------~~~v~---TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 --------DSYVM---TGSYNNVFRVFNLARGS 362 (433)
T ss_pred --------cceEe---cccccceEEEecCCCCc
Confidence 44555 78888899999966553
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3e-14 Score=131.96 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=131.3
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCC---CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe-CCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDG 140 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg 140 (449)
..+.+..|...|.+.+|+|+|+ .|+..+.+ ..|.+||+.++...... ...+....++|+|+ ++.|+.++ .+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPD-G~~La~~~~~~g 270 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPD-GSRLAFASSKDG 270 (429)
T ss_pred CceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCC-CCEEEEEEecCC
Confidence 3456777888999999999995 55555433 46999999876543322 12233457899999 77777654 677
Q ss_pred eEEEE--eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 141 TVSCT--DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 141 ~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
.+.|| |+.++... .+.... ..+....|+|+++.|+.++ .+|...+|++......... . ....
T Consensus 271 ~~~Iy~~d~~~~~~~-~lt~~~---------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l-~~~~-- 335 (429)
T PRK01742 271 VLNIYVMGANGGTPS-QLTSGA---------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL--V-GGRG-- 335 (429)
T ss_pred cEEEEEEECCCCCeE-eeccCC---------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE--e-cCCC--
Confidence 66555 66655543 222211 1267889999999777654 6777888876543222111 1 2221
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
....|+| +++.|+..+.++ +.+||+.++... .+ ... ....++.|+|+|++|+.++.++.+.+|++.
T Consensus 336 ~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~-~l--t~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTE-VL--SST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeE-Ee--cCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 4578999 999888887755 566998765432 11 111 123567899999999999999988888763
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=6.3e-15 Score=117.35 Aligned_cols=225 Identities=18% Similarity=0.189 Sum_probs=153.9
Q ss_pred CCCCccccceeee-ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE--------------Ee---------
Q 013086 58 HVIPDQVNCAVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--------------YG--------- 113 (449)
Q Consensus 58 ~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~--------------~~--------- 113 (449)
|.+........++ .|...|+.+.--|++ . |.+-+.|+.+.+|++.....+.. +.
T Consensus 40 w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~-l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eql 117 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGRLFITNLQSIPND-S-LDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQL 117 (323)
T ss_pred EEeecCccchhhhhhccceeeceeecCCc-c-hhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhh
Confidence 4444444455666 678889999998875 3 78888999999999854211100 00
Q ss_pred -----------------------------cccCCceeEEEEeeCC--CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCC
Q 013086 114 -----------------------------NIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLETGLALSLMNVNPNG 162 (449)
Q Consensus 114 -----------------------------~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 162 (449)
.+..+.+.+..|.... .-++++|..+|.|.+||+.++..+..+......
T Consensus 118 l~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv 197 (323)
T KOG0322|consen 118 LEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV 197 (323)
T ss_pred eecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc
Confidence 0122345555543221 224667778999999999998544333221111
Q ss_pred -CCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCC--CccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeE
Q 013086 163 -WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS--RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFA 239 (449)
Q Consensus 163 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 239 (449)
.....+...+.++.+.+.-..=++|+.+..+..|.+.... ..... ........+..+.+-| +++++++++.|+.|
T Consensus 198 ~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~-e~~lknpGv~gvrIRp-D~KIlATAGWD~Ri 275 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK-EITLKNPGVSGVRIRP-DGKILATAGWDHRI 275 (323)
T ss_pred ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc-eEEecCCCccceEEcc-CCcEEeecccCCcE
Confidence 1112233458889888766666777888888888876532 11111 1111222588899999 99999999999999
Q ss_pred EEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 240 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
++|+.+++.....+.. |.+.|++++|+|+..++|+++.|+.|.+|++
T Consensus 276 RVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 276 RVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999998777555543 8899999999999999999999999999986
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.4e-15 Score=129.47 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=126.1
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFG 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg 191 (449)
.||.+.|+++.|+.+ |.+|++|+.|-.+.|||.-..+.+..+..... ..|.++.|-|. .+.+++|..|.
T Consensus 47 ~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--------aNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHT--------ANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred ccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccc--------cceeEEeeeccCCCeEEEeccCcc
Confidence 789999999999999 99999999999999999988877776653221 23999999984 56899999999
Q ss_pred eEEEEECCCCCCc-------cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc-------eee-c
Q 013086 192 FLYLVDARTNSRS-------GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS-------LCD-L 256 (449)
Q Consensus 192 ~i~i~d~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~-~ 256 (449)
.|+++|+...+.. .......-+...|..|+..|..++.+.+++.||+|+-||++....-.. +.. .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999863211 111112223346888899996669999999999999999986322111 000 0
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 013086 257 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 257 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 289 (449)
..--...++.++| +..+|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1223567899999 66789999999999999964
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=3.9e-14 Score=123.87 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=127.4
Q ss_pred ecCCCEEEEEcCCCeEEEEECCCCCCccceEE--eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC------
Q 013086 178 NPEKGVVLVADNFGFLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------ 249 (449)
Q Consensus 178 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 249 (449)
.+.+--+++|-..|.|.+.|...... ..++. .......++++.|-|.+...++++-.+|.+++||....-.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 45667889999999999999876322 11111 1122347999999998888899999999999997642110
Q ss_pred -----CCceee--------------c-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc
Q 013086 250 -----GSSLCD--------------L-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 309 (449)
Q Consensus 250 -----~~~~~~--------------~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (449)
...+.. + -..+.|+..+|+|||++||+.+.||.+||||..+.+++...+.. +.
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-----FG-- 333 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-----FG-- 333 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-----cc--
Confidence 000000 0 12357889999999999999999999999999877664322111 11
Q ss_pred ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecC
Q 013086 310 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
..++++|+|+ |+|++ +|++|.-|.||.+...+.+..-++|. ..|..| +|.
T Consensus 334 -GLLCvcWSPD---------GKyIv---tGGEDDLVtVwSf~erRVVARGqGHk-SWVs~V-aFD 383 (636)
T KOG2394|consen 334 -GLLCVCWSPD---------GKYIV---TGGEDDLVTVWSFEERRVVARGQGHK-SWVSVV-AFD 383 (636)
T ss_pred -ceEEEEEcCC---------ccEEE---ecCCcceEEEEEeccceEEEeccccc-cceeeE-eec
Confidence 2258999999 99999 99999999999999999999888776 666666 665
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=2.8e-13 Score=111.06 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=136.6
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC-CCceeeeeecCCCCCCCCCcccceeE
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYG 174 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (449)
..|.|||=....++..+. ...+|.++.+.++ .+++.. .+.|.||... ..+.+..+....++ ..+.+
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-------kGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-------KGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCC-------CceEe
Confidence 479999965566666654 7889999999865 666666 5689999987 44555555433222 12445
Q ss_pred EEEecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCe-EEEEEccCCCCCCc
Q 013086 175 MDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF-ARIWDIRRLEAGSS 252 (449)
Q Consensus 175 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 252 (449)
++-+.+..+||. |..-|.|.+.|+...... .......|.+.|.|++.+- +|.++|++|..|+ |+|||..++.....
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 444444445555 456799999999886653 1234556677999999999 9999999999996 78999998777666
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 253 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 253 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
++.-.....|.+|+|||+..+|+++|..|+|+||.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 6554566789999999999999999999999999997543
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-14 Score=123.65 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=147.2
Q ss_pred eEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc
Q 013086 173 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 252 (449)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 252 (449)
..++|+.+|..+++++.||.+++|+..+...... ...+...|.++.|+| ++.+|++-+.| ..+||+.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 6789999999999999999999999766554432 334455899999999 99999999999 999999998744333
Q ss_pred eeecCCCCcEEEEEEcCCC---C--EEEEeeCCCcEEEEeCCCCCCCCCCccceecCC-CCccccceeeeeccCCCCCce
Q 013086 253 LCDLPHKRVVNSAYFSPSG---S--KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD-FNRHLTPFRAEWDPKDPSESL 326 (449)
Q Consensus 253 ~~~~~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 326 (449)
............+.|+.++ . .++....-+.|+.||+....-.. ...... ..+...+.++..+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~VS~d------ 292 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAVSDD------ 292 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEEcCC------
Confidence 3323344556778888876 3 33333446778888875443211 111111 111112234555555
Q ss_pred EEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 327 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
|+|++ .|+.+|.|-|++..+-+.++.....|...|+.+ .|+|+.+++++.+ |..+.|..+.-
T Consensus 293 ---Gkf~A---lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-tF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 ---GKFLA---LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-TFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ---CcEEE---EeccCCcEEEEEeceeeeeEeehhhheeeeeeE-EEcCCcCcccccccCCceeEEEEee
Confidence 89998 789999999999999999999888887899999 9999999999977 88888876643
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.1e-13 Score=112.64 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=137.2
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee-------------EEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-------------IVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~-------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
-+..|+|++|-|.+..-|+.|+.. -|.+|........ .....+| .+|++|.|.++ +..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeeccc
Confidence 356799999999887789999875 4999987532111 1111345 68999999999 888888876
Q ss_pred -CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 139 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 139 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
|..|+|||..++..+........ .+.-+.|+||+.+|++++-|+..++|......-.. ...-..+.|
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glg---------g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~lgsgrv 283 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLG---------GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWILGSGRV 283 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCC---------ceeeEEEcCCCCEEEEecccceeeeehhcccceec---ceeccCCce
Confidence 77899999999987765533222 28899999999999999999999999655432211 122223389
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee------------------ecC----CCCcEEEEEEcCCCCEEE
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC------------------DLP----HKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~~----~~~~v~~~~~~~~~~~l~ 275 (449)
....|+| +|.+|+.... |.-++|.+.-........ ... -.+.+.+++|.|.|.+|+
T Consensus 284 qtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 284 QTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 9999999 7776555442 344555443211110000 000 245788999999999999
Q ss_pred EeeCCC--------cEEEEeCC
Q 013086 276 TTSQDN--------RLRIWDSI 289 (449)
Q Consensus 276 ~~~~dg--------~i~vwd~~ 289 (449)
+.-..+ .|.+||.+
T Consensus 362 v~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 362 VIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred EEEcCCchhhhhhhhhhhhccc
Confidence 876543 35566654
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.7e-13 Score=123.17 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=147.1
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.|.+||.......... .+...+....|+|+ ++.|+..+. +..|.+|++.+++......... ...
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------~~~ 246 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------HNG 246 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC----------CcC
Confidence 6888888765544333 36678999999999 777776542 4579999998876543322211 145
Q ss_pred EEEEecCCCEEEEE-cCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-Ce--EEEEEccCC
Q 013086 174 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HF--ARIWDIRRL 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~ 247 (449)
..+|+|||+.|+.. ..+| .|++||+.++... ........+....|+| +++.|+..+.+ +. |+++|+.++
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC
Confidence 67899999988865 4444 6999999876532 2223333578899999 89888777654 44 555566543
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
.. ..+ ...........|+|+|++|+..+.+ ..|.+||+.+++... +. . .. ......|+|+
T Consensus 322 ~~-~~l--t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~----Lt-~-~~----~~~~p~~SpD---- 384 (429)
T PRK03629 322 AP-QRI--TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LT-D-TF----LDETPSIAPN---- 384 (429)
T ss_pred Ce-EEe--ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----eC-C-CC----CCCCceECCC----
Confidence 22 122 1233345678999999999876653 358889998775421 11 1 11 0124678888
Q ss_pred ceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 325 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 325 ~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
|++++..........+.++++ +|.....+..+. ..+... +|+|
T Consensus 385 -----G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~-~~~~~p-~Wsp 427 (429)
T PRK03629 385 -----GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD-GQVKFP-AWSP 427 (429)
T ss_pred -----CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC-CCcCCc-ccCC
Confidence 555542111112234777887 566666676544 445555 6876
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-12 Score=121.46 Aligned_cols=202 Identities=12% Similarity=0.139 Sum_probs=131.5
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEc--CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE-eCCC--
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-SSDG-- 140 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg-- 140 (449)
.+.+..+...+.+.+|+|||..++++.. .+..|.+|++.+++..... .....+..+.|+|+ ++.|+.. +.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD-G~~La~~~~~~g~~ 267 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD-GSKLAFALSKTGSL 267 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC-CCEEEEEEcCCCCc
Confidence 3455566778999999999954433322 2457999999877543332 23344567899999 7766654 4454
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-C--eEEEEECCCCCCccceEEeecCCCce
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
.|.+||+.+++........ ..+....|+|+++.|+..+.+ + .|+++|+.++... .........
T Consensus 268 ~I~~~d~~tg~~~~lt~~~----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGR----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEEECCCCCEEEccCCC----------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 5889999887654332211 126778999999988776654 3 5556677655322 222223346
Q ss_pred EEEEEcCCCCCEEEEEeCC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCc---EEEEeCC
Q 013086 218 VGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR---LRIWDSI 289 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd~~ 289 (449)
....|+| +++.|+..+.+ ..|.+||+.++.. ..+. .........|+|||++|+.++.++. +.++++.
T Consensus 334 ~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 334 QDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred cCEEECC-CCCEEEEEEccCCCceEEEEECCCCCe-EEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 6789999 88888776543 3588899876432 1221 1222346789999999999988764 6777774
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=5e-14 Score=123.21 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=110.5
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--------------e--------------eeEEEecccCCceeEEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------------S--------------EKIVYGNIHSCIVNNIR 124 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--------------~--------------~~~~~~~~h~~~v~~~~ 124 (449)
+..|+|+.|-|.++.+++.+-.+|.+.+||.... . .+... ..-.+.|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee-Eecccccccee
Confidence 4789999999988788888888999999976211 0 00001 11245789999
Q ss_pred EeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc
Q 013086 125 FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 125 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
|+|+ +++||+.+.||.++|||..+.+.+..++.-. ..+.|++|+|||++|++|++|.-|.||.+...+.+
T Consensus 298 FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---------GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 298 FSPD-GKYLATVSQDGFLRIFDFDTQELLGVMKSYF---------GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred EcCC-CceEEEEecCceEEEeeccHHHHHHHHHhhc---------cceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 9998 9999999999999999999877766554322 23999999999999999999999999999887654
Q ss_pred cceEEeecCCCceEEEEEcC
Q 013086 205 GEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~ 224 (449)
...+.|.++|..++|.|
T Consensus 368 ---ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ---ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---EeccccccceeeEeecc
Confidence 36788888999999987
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.3e-12 Score=113.63 Aligned_cols=277 Identities=15% Similarity=0.188 Sum_probs=172.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe-----C-----CCeEE
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-----S-----DGTVS 143 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~-----dg~v~ 143 (449)
..++..+++++| +++|.+. +..++|++......+.... -. .+.++.|+|. +.+|.+-- . .-.+.
T Consensus 35 ~~~~v~~~S~~G-~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNG-RLFAYSD-NQVVKVFEIATLKVVLCVE--LK-KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCC-cEEEEEc-CCeEEEEEccCCcEEEEec--cc-eeeeeeeccc-ccccccccccccccCCCCCCCcee
Confidence 347788899999 6666654 6789999998876444432 22 7899999998 88876631 1 23477
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+|+++++.....+...... -++..|+.|..+.+ --..+.+++|++...+.... .++ ...++.+.++
T Consensus 109 v~~vet~~~~s~~q~k~Q~---------~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~--kl~--~~~i~~f~lS 174 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQN---------GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH--KLS--VSGITMLSLS 174 (566)
T ss_pred eeeeccceehhheehhhhc---------Ccccccccchhhhh-hhhcceEEEEecCCccceee--eee--ccceeeEEec
Confidence 9999986554444332221 24666777665333 23346788888776433221 222 2246666666
Q ss_pred CC-CCCEEEE-----EeCCCeEEEEEccCCC-------------------------------------------------
Q 013086 224 PI-QPELLLS-----CGNDHFARIWDIRRLE------------------------------------------------- 248 (449)
Q Consensus 224 ~~-~~~~l~~-----~~~dg~i~iwd~~~~~------------------------------------------------- 248 (449)
|. ....+++ .+.-+.++||......
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 62 1222222 1223345555332000
Q ss_pred -----CCCceeecCCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCC
Q 013086 249 -----AGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 321 (449)
Q Consensus 249 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (449)
.......+...++|.++.|+|+++.++++. .-..+.|||++..-. +...-. ..-++.|+|.
T Consensus 255 ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--------~df~eg---pRN~~~fnp~- 322 (566)
T KOG2315|consen 255 LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--------FDFPEG---PRNTAFFNPH- 322 (566)
T ss_pred EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--------EeCCCC---CccceEECCC-
Confidence 001111123578999999999998876654 467899999863211 111100 1126789998
Q ss_pred CCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-------CCeEEEEcCC
Q 013086 322 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRPK 394 (449)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-------dg~i~iw~~~ 394 (449)
|++++...-|.-.|.|.|||+.+.+++..+.... ..+. .|+|||++++|++ |..++||+..
T Consensus 323 --------g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~---eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 323 --------GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVF---EWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred --------CCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEE---EEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 6666655567888999999999988888886654 3333 8999999999865 4789999974
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.6e-12 Score=120.91 Aligned_cols=205 Identities=18% Similarity=0.204 Sum_probs=136.9
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEc---CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGD---KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDG 140 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg 140 (449)
..+.+..|...+.+.+|+|||. .|+..+ .+..|.+||+.++..... ..+.+.+....|+|+ ++.| ++.+.++
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPD-G~~la~~~~~~g 268 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPD-GRKVVMSLSQGG 268 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEe--ecCCCcccCcEECCC-CCEEEEEEecCC
Confidence 4456778888999999999995 455443 246899999988765433 235667788999999 6655 4556555
Q ss_pred e--EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCC
Q 013086 141 T--VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 141 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
. |.+||+.++.... +..... ......|+||++.|+..+. +| .|+++|+..+... .......
T Consensus 269 ~~~Iy~~d~~~~~~~~-Lt~~~~---------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~ 334 (435)
T PRK05137 269 NTDIYTMDLRSGTTTR-LTDSPA---------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGG 334 (435)
T ss_pred CceEEEEECCCCceEE-ccCCCC---------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCC
Confidence 4 7777888776543 221111 1456889999998887653 33 6888887765432 2222233
Q ss_pred ceEEEEEcCCCCCEEEEEeCC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC------CcEEEE
Q 013086 216 KVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD------NRLRIW 286 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw 286 (449)
.+....|+| +++.|+....+ ..|.+||+..... ..+.....+..+.|+|||+.|+..+.+ ..|.++
T Consensus 335 ~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 335 RYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE----RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce----EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 567788999 88888876543 3688888754322 122223346788999999998776543 257788
Q ss_pred eCCCCC
Q 013086 287 DSIFGN 292 (449)
Q Consensus 287 d~~~~~ 292 (449)
|+..+.
T Consensus 410 dl~g~~ 415 (435)
T PRK05137 410 DLTGRN 415 (435)
T ss_pred ECCCCc
Confidence 876543
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.4e-12 Score=121.25 Aligned_cols=237 Identities=12% Similarity=0.105 Sum_probs=145.5
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCCCCceeeeeecCCCCCCCCCcccce
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
..|.+||........ + ..+...+....|+|+ ++.|+..+. ...|.+||+.+++........ . ..
T Consensus 184 ~~l~i~D~~g~~~~~-l-t~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g---------~~ 250 (433)
T PRK04922 184 YALQVADSDGYNPQT-I-LRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRELVASFR-G---------IN 250 (433)
T ss_pred EEEEEECCCCCCceE-e-ecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-C---------Cc
Confidence 368899986544333 3 246778999999999 888877764 346999999887654332211 1 14
Q ss_pred eEEEEecCCCEEEE-EcCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CCe--EEEEEccC
Q 013086 173 YGMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHF--ARIWDIRR 246 (449)
Q Consensus 173 ~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~ 246 (449)
...+|+|+|+.++. .+.+| .|++||+.++... ....+.......+|+| ++..|+..+. +|. |+++|+.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 57889999997764 44444 6999999876532 2222222456789999 8888877664 444 66667655
Q ss_pred CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCC
Q 013086 247 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 323 (449)
Q Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (449)
++. ..+. ........++|+|+|++|+..+.++ .|.+||+.+++... + ..... .....|+|+
T Consensus 326 g~~-~~lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~----L-t~~~~-----~~~p~~spd--- 389 (433)
T PRK04922 326 GSA-ERLT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT----L-TPGSL-----DESPSFAPN--- 389 (433)
T ss_pred CCe-EEee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE----C-CCCCC-----CCCceECCC---
Confidence 332 1221 1223345689999999998765443 69999998776421 1 11101 124578888
Q ss_pred CceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 324 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
|++++..........|.++++. |.....+..+. ..+... +|+|
T Consensus 390 ------G~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~-g~~~~p-~wsp 432 (433)
T PRK04922 390 ------GSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD-GEVREP-AWSP 432 (433)
T ss_pred ------CCEEEEEEecCCceEEEEEECC-CCceEEcccCC-CCCCCC-ccCC
Confidence 5444321122334568888884 44455554332 334444 5766
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=4.4e-13 Score=111.06 Aligned_cols=257 Identities=19% Similarity=0.273 Sum_probs=180.1
Q ss_pred CcccccCCCcceeeecc-ceeeccccccccccCCCCCChHHhhhhhcCCCCCCCcCCCCCCccccceeeeccCccEEEEE
Q 013086 2 KPCFLCKMPGHTTMSCP-HRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLE 80 (449)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 80 (449)
||-++-++.|+...... .-+..+.+.+..+.+...++|. .+......+ .....-..+++++.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~l---krds~q~wp--------------sI~~~mP~~~~~~~ 75 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWL---KRDSGQYWP--------------SIYHYMPSPCSAME 75 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEE---eccccccCc--------------hhhhhCCCCceEee
Confidence 67788888887766443 3334477778777777766552 111111111 12223356799999
Q ss_pred EeCCCCcEEEEEcCCCcEEEEeCcC----CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee
Q 013086 81 FHPTNNHILLSGDKKGQVGVWDFYK----VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 81 ~~~~~~~~l~t~~~d~~i~vwd~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 156 (449)
+.++. +.|+.|-..|++.-+.+.. ...+... ..|...|..+.|+-. ...+++.+.|..+.-.-.+.+..+..+
T Consensus 76 y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y 152 (404)
T KOG1409|consen 76 YVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGY 152 (404)
T ss_pred eeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccce
Confidence 99988 6799999999999887653 2233333 579999999999987 889999999987766666666655544
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
..... .+++.+.-. +..+|...|.|.+..+...... .+.....+...+.+++|.| ...+|.+|..|
T Consensus 153 ~~~~~----------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~-~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d 218 (404)
T KOG1409|consen 153 NFETP----------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ-LITTFNGHTGEVTCLKWDP-GQRLLFSGASD 218 (404)
T ss_pred Eeecc----------CCCCceeeE--EEEecccccceEEEEEeecCCc-eEEEEcCcccceEEEEEcC-CCcEEEecccc
Confidence 33221 112222222 6677778888877776654443 2345566777999999999 89999999999
Q ss_pred CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 237 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..+.+||+--.. +......+|...|..+...+--+.|.+++.||.|.+|+++....
T Consensus 219 ~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 219 HSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred CceEEEeccCCc-ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 999999996432 33344457889999998888888999999999999999976544
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=1.6e-11 Score=110.16 Aligned_cols=270 Identities=15% Similarity=0.103 Sum_probs=160.2
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe-CCCeEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~ 143 (449)
.+..+......-..+.|+||| +++++++.||.|.++|+.+.+.+..+. -.....+++++++ +++++++. .++.+.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~--~G~~~~~i~~s~D-G~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIK--VGGNPRGIAVSPD-GKYVYVANYEPGTVS 103 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T-TTEEEEEEEETTEEE
T ss_pred EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEe--cCCCcceEEEcCC-CCEEEEEecCCCcee
Confidence 345555444444457899999 677778899999999999999888875 4556789999999 88888775 589999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
++|.++.+.+..+......... ....+.++..++....+++. -..+.|.+.|......... .....+.......|
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~--~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDG--PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV--TTIKVGRFPHDGGF 179 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTT--S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE--EEEE--TTEEEEEE
T ss_pred Eeccccccceeecccccccccc--cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce--eeeccccccccccc
Confidence 9999999988887654322111 22347788888888855555 5568999999877644321 22223336788999
Q ss_pred cCCCCCEEEEE-eCCCeEEEEEccCCCCCC--------------------------------------------------
Q 013086 223 NPIQPELLLSC-GNDHFARIWDIRRLEAGS-------------------------------------------------- 251 (449)
Q Consensus 223 ~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-------------------------------------------------- 251 (449)
+| ++++++++ .....|-++|..+.+...
T Consensus 180 dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 180 DP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp -T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred Cc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 99 88776554 445677777766432200
Q ss_pred --ceeecCCCCcEEEEEEcCCCCEEEEe----eCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCc
Q 013086 252 --SLCDLPHKRVVNSAYFSPSGSKILTT----SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 325 (449)
Q Consensus 252 --~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (449)
.+..+...+.-.-+..+|+++++.+. ...+.|.++|.++.+.... ...........+.|++++....
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~-------i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT-------ITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE--------HHHHHT--EEEEEE-TTSSEEE
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE-------EeccCCCcEeccEECCCCCEEE
Confidence 00000011112457779999999988 4458999999987643211 1111111245788898832222
Q ss_pred eEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 326 LAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 326 ~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
+ + ....++.|.|||..+.+.+..+.
T Consensus 332 v-------S---~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 V-------S---VWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E-------E---EE--TTEEEEEETTTTEEEEEEE
T ss_pred E-------E---EecCCCEEEEEECCCcEEEEEEE
Confidence 2 1 12334489999999999999887
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.9e-12 Score=117.79 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=140.4
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---CeEEEEeCCCCceeeeeecCCCCCCCCCcccce
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
..|.++|........ + ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+.+++........ . ..
T Consensus 176 ~~L~~~D~dG~~~~~-l-~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g---------~~ 242 (427)
T PRK02889 176 YQLQISDADGQNAQS-A-LSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-G---------SN 242 (427)
T ss_pred cEEEEECCCCCCceE-e-ccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-C---------Cc
Confidence 357777765433222 3 347788999999999 7877776642 45999999988764432221 1 15
Q ss_pred eEEEEecCCCEEEE-EcCCCeEEEE--ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEccCCC
Q 013086 173 YGMDINPEKGVVLV-ADNFGFLYLV--DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRRLE 248 (449)
Q Consensus 173 ~~~~~~~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 248 (449)
...+|+||++.|+. .+.+|...+| |+..+.. .....+........|+| ++..|+..+. +|...+|.+....
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL----RRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCc----EECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC
Confidence 67899999998875 5667765555 5544332 12222333456788999 8887776654 4566666553211
Q ss_pred -CCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC
Q 013086 249 -AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 249 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
....+. . .........|+|+|++|+..+.++ .|.+||+.+++... +. .... .....|+|+
T Consensus 318 g~~~~lt-~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~----lt-~~~~-----~~~p~~spd---- 381 (427)
T PRK02889 318 GAAQRVT-F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA----LT-DTTR-----DESPSFAPN---- 381 (427)
T ss_pred CceEEEe-c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE----cc-CCCC-----ccCceECCC----
Confidence 111221 1 222344678999999998877654 69999998776421 11 1111 124689998
Q ss_pred ceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC
Q 013086 325 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 376 (449)
Q Consensus 325 ~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~ 376 (449)
|++++..........+.+.++ +|.....+..+. +.+... +|+|-
T Consensus 382 -----g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~-g~~~~p-~wsp~ 425 (427)
T PRK02889 382 -----GRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG-GDVREP-SWGPF 425 (427)
T ss_pred -----CCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC-CCCCCC-ccCCC
Confidence 444432111122244666676 566565555433 334444 67763
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.7e-12 Score=118.35 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=133.9
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcC---CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDG 140 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg 140 (449)
+.+.+..|...+.+.+|+|+|+ .|+..+. +..|.+||+.++...... .+.+...++.|+|+ ++.| ++.+.+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpD-G~~l~~~~s~~g 270 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPD-GRRLALTLSRDG 270 (433)
T ss_pred CceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCC-CCEEEEEEeCCC
Confidence 4456777788899999999995 5555543 346999999877654332 24445568899999 6655 4555555
Q ss_pred --eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCC--eEEEEECCCCCCccceEEeecCCC
Q 013086 141 --TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFG--FLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 141 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
.|++||+.+++.... ..... .....+|+|+++.|+.++ .+| .|+++|+.++... .+. ..+.
T Consensus 271 ~~~Iy~~d~~~g~~~~l-t~~~~---------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt--~~g~ 336 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRL-TNHFG---------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLT--FQGN 336 (433)
T ss_pred CceEEEEECCCCCeEEC-ccCCC---------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eee--cCCC
Confidence 599999988765432 21111 145678999999888765 344 4777777665432 111 1222
Q ss_pred ceEEEEEcCCCCCEEEEEeCCC---eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSI 289 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 289 (449)
.....+|+| +++.|+..+.++ .|.+||+.++... .+.+........|+|+|++|+..+.+ +.|.++++.
T Consensus 337 ~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~----~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR----TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE----ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 455789999 888888765443 6999998764432 22233334567999999998877653 457778875
Q ss_pred C
Q 013086 290 F 290 (449)
Q Consensus 290 ~ 290 (449)
.
T Consensus 412 g 412 (433)
T PRK04922 412 G 412 (433)
T ss_pred C
Confidence 3
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.8e-12 Score=105.52 Aligned_cols=149 Identities=15% Similarity=0.291 Sum_probs=100.9
Q ss_pred eEEEEeeCCCCeEEEEeC----------CCeEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE--
Q 013086 121 NNIRFNPTNDGTVYAASS----------DGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-- 187 (449)
Q Consensus 121 ~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-- 187 (449)
..+.|+|+ |++|+.-.. -+...+|.++. +.....+..... ..|.+++|+|+++.+++.
T Consensus 9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--------~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--------GPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--------CceEEEEECcCCCEEEEEEc
Confidence 45778888 655544332 13345555522 223333333222 139999999999987654
Q ss_pred cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 188 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 188 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
..+..|.+||++. +. ..... ...++.+.|+| ++++|++++. .|.|.+||+++.+ .+....|. .++.
T Consensus 80 ~~~~~v~lyd~~~-~~---i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~~~~~-~~t~ 148 (194)
T PF08662_consen 80 SMPAKVTLYDVKG-KK---IFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKK---KISTFEHS-DATD 148 (194)
T ss_pred cCCcccEEEcCcc-cE---eEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCE---EeeccccC-cEEE
Confidence 4567999999972 21 22222 33788999999 9999999874 4679999998533 34334444 4789
Q ss_pred EEEcCCCCEEEEeeC------CCcEEEEeCC
Q 013086 265 AYFSPSGSKILTTSQ------DNRLRIWDSI 289 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~------dg~i~vwd~~ 289 (449)
++|+|+|++|+++.. |+.++||+..
T Consensus 149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 149 VEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999999999874 7889999985
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=4.5e-11 Score=107.49 Aligned_cols=281 Identities=16% Similarity=0.229 Sum_probs=168.8
Q ss_pred CcEEEEeC--cCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----CCeEEEEeCCCC--ceeeeeecCCCCCCCCC
Q 013086 96 GQVGVWDF--YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGTVSCTDLETG--LALSLMNVNPNGWHGPR 167 (449)
Q Consensus 96 ~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~ 167 (449)
+.|.+|++ .++.........-......++++|+ +++|+++.. ++.|..|++... .....-.....+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g----- 86 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG----- 86 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----
Confidence 68888888 3333332222224556788999999 888888876 578999988764 332222221111
Q ss_pred cccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEee-----------cCCCceEEEEEcCCCCCEEEEEeC
Q 013086 168 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIH-----------RKGSKVVGLHCNPIQPELLLSCGN 235 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~ 235 (449)
.....++++|++++|+++. .+|.|.++++.....+....... .......++.++| +++++++...
T Consensus 87 --~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dl 163 (345)
T PF10282_consen 87 --SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDL 163 (345)
T ss_dssp --SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEET
T ss_pred --CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEec
Confidence 1267899999999998885 68899999998753332221111 1234578999999 8887776543
Q ss_pred -CCeEEEEEccCCCCC-Ccee--ecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCCCCCCCccceecCCCCc
Q 013086 236 -DHFARIWDIRRLEAG-SSLC--DLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSI--FGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 236 -dg~i~iwd~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~ 308 (449)
...|.+|++...... .... ..........+.|+|+++++++..+ ++.|.+|++. ++.+...............
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 458999998754311 0111 2245566889999999998876654 7889999987 3322110000001112222
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC--CceE--EEEEecCccceeceeeecCCCCcEEeecC
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--TGQL--VAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~--~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
...+-.+..+|+ |+++.. +....+.|.+|++. +|++ +..+.... .....+ +++|+|++|+++.
T Consensus 244 ~~~~~~i~ispd---------g~~lyv--snr~~~sI~vf~~d~~~g~l~~~~~~~~~G-~~Pr~~-~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 244 ENAPAEIAISPD---------GRFLYV--SNRGSNSISVFDLDPATGTLTLVQTVPTGG-KFPRHF-AFSPDGRYLYVAN 310 (345)
T ss_dssp SSSEEEEEE-TT---------SSEEEE--EECTTTEEEEEEECTTTTTEEEEEEEEESS-SSEEEE-EE-TTSSEEEEEE
T ss_pred cCCceeEEEecC---------CCEEEE--EeccCCEEEEEEEecCCCceEEEEEEeCCC-CCccEE-EEeCCCCEEEEEe
Confidence 223446778887 555442 23346789999983 3433 33333222 224455 7999999999877
Q ss_pred --CCeEEEEcC--CCchh
Q 013086 385 --SRSIFIWRP--KEKSE 398 (449)
Q Consensus 385 --dg~i~iw~~--~~~~~ 398 (449)
++.|.+|++ ++|.+
T Consensus 311 ~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTTTEEEEEEEETTTTEE
T ss_pred cCCCeEEEEEEeCCCCcE
Confidence 689999976 45553
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.1e-11 Score=113.51 Aligned_cols=235 Identities=17% Similarity=0.175 Sum_probs=144.1
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.|.+||......... ..|...+....|+|+ ++.|+..+. +..|.+||+.+++........ . .+.
T Consensus 183 ~l~~~d~dg~~~~~l--t~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g---------~~~ 249 (435)
T PRK05137 183 RLAIMDQDGANVRYL--TDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRELVGNFP-G---------MTF 249 (435)
T ss_pred EEEEECCCCCCcEEE--ecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-C---------ccc
Confidence 788888865544333 347788999999999 777777653 468999999988654322111 1 256
Q ss_pred EEEEecCCCEEEE-EcCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccCC
Q 013086 174 GMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~ 247 (449)
..+|+|+|+.|+. .+.++ .|++||+.++... ....+........|+| ++..|+..+. +| .|+++|+...
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC
Confidence 7889999997764 44444 5888898876532 2223333566789999 8888877664 33 6888887653
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
.. ..+. .....+....|+|+|++|+..+.+ ..|.+||+.++... . .. ... ......|+|+
T Consensus 325 ~~-~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----~-lt-~~~----~~~~p~~spD---- 387 (435)
T PRK05137 325 NP-RRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----I-LT-SGF----LVEGPTWAPN---- 387 (435)
T ss_pred Ce-EEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----e-cc-CCC----CCCCCeECCC----
Confidence 32 2221 234456678999999999887653 36888887654321 1 11 111 1125689998
Q ss_pred ceEEEcceecccCC-CCCC--cceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 325 SLAVIGRYISENYN-GAAL--HPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 325 ~~~~~g~~~~~~~~-~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
|++++.... +... ..+.++|+..+.. ..+... ..+... +|+|
T Consensus 388 -----G~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~--~~~~~p-~Wsp 432 (435)
T PRK05137 388 -----GRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP--GDASDP-AWSP 432 (435)
T ss_pred -----CCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC--CCccCc-ccCC
Confidence 444331111 1111 4688888866554 344322 223333 5766
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.5e-12 Score=104.65 Aligned_cols=150 Identities=13% Similarity=0.232 Sum_probs=103.6
Q ss_pred EEEEEeCCCCcEEEEEcC---------CCcEEEEeCcCC-eeeEEEecccCCceeEEEEeeCCCCeEEEE--eCCCeEEE
Q 013086 77 TCLEFHPTNNHILLSGDK---------KGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA--SSDGTVSC 144 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~---------d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~dg~v~i 144 (449)
..+.|+++|+.+++.... -+...+|.++.. .....+.....++|.+++|+|+ ++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~-g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN-GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC-CCEEEEEEccCCcccEE
Confidence 357899999766555541 134556655332 2223332234567999999999 7766544 45779999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC---CCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
||++ ++.+..+. .. .+..+.|+|+|+++++++. .|.+.+||.++.+.+. ...+. .++.++
T Consensus 88 yd~~-~~~i~~~~--~~---------~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~~-~~t~~~ 150 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQ---------PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEHS-DATDVE 150 (194)
T ss_pred EcCc-ccEeEeec--CC---------CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----ccccC-cEEEEE
Confidence 9996 44444442 11 2778999999999999864 4679999999655442 22222 588999
Q ss_pred EcCCCCCEEEEEeC------CCeEEEEEcc
Q 013086 222 CNPIQPELLLSCGN------DHFARIWDIR 245 (449)
Q Consensus 222 ~~~~~~~~l~~~~~------dg~i~iwd~~ 245 (449)
|+| ++++|++++. |..++||+..
T Consensus 151 WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 151 WSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 999 9999999875 6778899875
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.5e-12 Score=111.10 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=175.1
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-----------CCeEEEE
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-----------DGTVSCT 145 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------dg~v~iw 145 (449)
+-+.|||.| .||+|-..-| |.+|--.+-.....+. |. .|.-+.|||. .++|+|-+. ...++||
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCc-cceEEEecCCccccCcccCCCceEEEE
Confidence 568999999 7899887655 8999877766666664 65 4889999999 999999764 2579999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|+.+|...+.+....... ....-+.||.|++++|.-.. ..|.||+..+...+.. ... .-..|....|+|
T Consensus 288 DI~tG~lkrsF~~~~~~~------~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP- 356 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPY------LKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSL--KISGIRDFSWSP- 356 (698)
T ss_pred EccccchhcceeccCCCc------cccceEEeccCCceeEEecc-ceEEEEecCceeeecc-ccc--CCccccCcccCC-
Confidence 999999988887642221 11445789999999998776 4677777655322110 000 111344555555
Q ss_pred CCCEEEEEeC---------------------------------------------------------CCeEEEEEccCCC
Q 013086 226 QPELLLSCGN---------------------------------------------------------DHFARIWDIRRLE 248 (449)
Q Consensus 226 ~~~~l~~~~~---------------------------------------------------------dg~i~iwd~~~~~ 248 (449)
.+++||-=+. -..+.|+.++...
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 3433332110 0112222222111
Q ss_pred CCCceeecCCCCcEEEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCc
Q 013086 249 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 325 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (449)
. .+........|...+|-|.|..+++-+. ..++.+|.+.+... .......+.. .....+.|+|.
T Consensus 437 I--pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk-~~~N~vfwsPk----- 503 (698)
T KOG2314|consen 437 I--PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK-KFANTVFWSPK----- 503 (698)
T ss_pred C--CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc-cccceEEEcCC-----
Confidence 1 1111234567888999999988877654 35788998874111 0011111111 22236899999
Q ss_pred eEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-------CCeEEEEcCCC
Q 013086 326 LAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRPKE 395 (449)
Q Consensus 326 ~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-------dg~i~iw~~~~ 395 (449)
|++++...-++..|.+.++|+.-..+...-...| ...+.+ .|.|.|+|++|++ |.--+||+++-
T Consensus 504 ----G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~v-eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 504 ----GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEV-EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ----CcEEEEEEecccccceEEEecchhhhhhccCccc-cccccc-eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7777655556688999999997533332222222 345555 7999999999975 34567787654
No 239
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=1.8e-10 Score=100.98 Aligned_cols=286 Identities=12% Similarity=0.011 Sum_probs=167.2
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----------CCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----------DGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
+.|.+.|..+.+.+..+..+.... .+ ++|+ ++.|+++.. +..|.+||+.+.+.+..+..+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 889999999998888886444333 34 9999 666666654 789999999999999988876442211
Q ss_pred CCcccceeEEEEecCCCEEEEEc-C-CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVAD-N-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
.......++++|||+++++.. . +..|.++|+.+++.+.+.-. .....-...+ +..+++. +.||......
T Consensus 103 --~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~--e~~~~~~-~~Dg~~~~v~ 173 (352)
T TIGR02658 103 --VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTA--NDTFFMH-CRDGSLAKVG 173 (352)
T ss_pred --ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEec--CCccEEE-eecCceEEEE
Confidence 111255789999999999876 3 68999999999886653321 1112222222 2222222 2345444433
Q ss_pred ccCCCCCC--ceeecCC-CCcE-EEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC----ccc--cc
Q 013086 244 IRRLEAGS--SLCDLPH-KRVV-NSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN----RHL--TP 312 (449)
Q Consensus 244 ~~~~~~~~--~~~~~~~-~~~v-~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~--~~ 312 (449)
+....... ....+.. ..++ ..-.|.+ +|+++.+... |.|.+.|+........ .. ....... ++. ..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~-~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PA-IEAFTEAEKADGWRPGGW 250 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ce-eeeccccccccccCCCcc
Confidence 32211100 0000000 0000 0014456 8888777666 9999999755432110 10 0000000 000 00
Q ss_pred eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc-EEeecC--CCeEE
Q 013086 313 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLASGS--SRSIF 389 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~s--dg~i~ 389 (449)
-.++++|+.....++..+.-.- .--...+.|.++|..+++.+..+.... ....+ +++||++ +|++.+ ++.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~--thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~i-avS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKW--THKTASRFLFVVDAKTGKRLRKIELGH--EIDSI-NVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccc--cccCCCCEEEEEECCCCeEEEEEeCCC--ceeeE-EECCCCCeEEEEeCCCCCcEE
Confidence 1256666633222211110000 000123579999999999999987653 55666 8999999 777655 79999
Q ss_pred EEcCCCchhhhhh
Q 013086 390 IWRPKEKSELVEQ 402 (449)
Q Consensus 390 iw~~~~~~~~~~~ 402 (449)
+.|..+++.+..+
T Consensus 326 ViD~~t~k~i~~i 338 (352)
T TIGR02658 326 IFDAETGKELSSV 338 (352)
T ss_pred EEECcCCeEEeee
Confidence 9999999988776
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.4e-14 Score=124.38 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=153.6
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 251 (449)
.+.+.++.+|++++.|+..|.|..+|..++....++.. ...|.++.|.. +.+++|++ ....++|||-. +.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~----Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLH-NEQFFAVA-QKKYVYVYDNN----GT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhc-chHHHHhh-hhceEEEecCC----Cc
Confidence 67889999999999999999999999999876543311 12688999997 77777776 46789999964 44
Q ss_pred ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc
Q 013086 252 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 331 (449)
Q Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 331 (449)
.+..+.....|..+.|-|..-+|++++..|.++--|+.+|+++.....-. +.. -.+.-+|. ..+
T Consensus 202 ElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~------G~~--~vm~qNP~---NaV----- 265 (545)
T KOG1272|consen 202 ELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA------GRT--DVMKQNPY---NAV----- 265 (545)
T ss_pred EEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC------Ccc--chhhcCCc---cce-----
Confidence 44444456789999999999999999999999999999998854322110 000 02233333 111
Q ss_pred eecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhh
Q 013086 332 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQ 402 (449)
Q Consensus 332 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~ 402 (449)
+ ..|...|+|.+|.....+++..+..|. +.+.++ ++.++|+|+||++ |..++|||++.-..+...
T Consensus 266 -i---h~GhsnGtVSlWSP~skePLvKiLcH~-g~V~si-Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 266 -I---HLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSI-AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred -E---EEcCCCceEEecCCCCcchHHHHHhcC-CCcceE-EECCCCcEEeecccccceeEeeecccccccee
Confidence 1 158889999999999999999888887 889999 9999999999999 999999999876655443
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.6e-12 Score=115.49 Aligned_cols=200 Identities=16% Similarity=0.125 Sum_probs=126.3
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcC-C--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE-EEeCCCe
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDK-K--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGT 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~-d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~ 141 (449)
...+..+...+.+.+|+|+|+ .|+..+. + ..|.+||+.++...... ...+.+....|+|+ ++.|+ +.+.+|.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD-G~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD-GRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEEccCCC
Confidence 345567788899999999995 4554443 2 45999999887654332 23455678999999 76665 5677887
Q ss_pred EEEEeC--CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeEEEEE--CCCCCCccceEEeecCCCc
Q 013086 142 VSCTDL--ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVD--ARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 142 v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~~~~~~~~~~~~~~ 216 (449)
..+|.+ .++. ...+..... ......|+|||+.|+..+. +|...+|. +..+... .... ....
T Consensus 264 ~~Iy~~d~~~~~-~~~lt~~~~---------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~--~lt~--~g~~ 329 (427)
T PRK02889 264 SQIYTVNADGSG-LRRLTQSSG---------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ--RVTF--TGSY 329 (427)
T ss_pred ceEEEEECCCCC-cEECCCCCC---------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE--EEec--CCCC
Confidence 666654 4443 222221111 1456789999998876553 45555554 4443321 1111 2223
Q ss_pred eEEEEEcCCCCCEEEEEeCCC---eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEeC
Q 013086 217 VVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDS 288 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~ 288 (449)
.....|+| ++++|+..+.++ .|.+||+.+++.. . +..........|+|+|+.|+.++.++ .+.+.++
T Consensus 330 ~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~---lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 330 NTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVT-A---LTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeE-E---ccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 45678999 999888776554 6999999765432 1 21223346789999999998887644 3555555
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.4e-11 Score=98.79 Aligned_cols=276 Identities=15% Similarity=0.136 Sum_probs=172.0
Q ss_pred CCcEEEEeCcCCeeeE--EEecccCCceeEEEEeeC--CCC-eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcc
Q 013086 95 KGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNPT--NDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTW 169 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~~~~--~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 169 (449)
.|.+.+|++...+... .+.......+..+.|... ++. .++-+-..|.|.++..........+..- ......
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----s~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----SSKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----chhhhh
Confidence 4678888887644322 222334566788888642 244 5566677899999987655443333211 111111
Q ss_pred c-ceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC
Q 013086 170 R-MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 170 ~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 248 (449)
. ...++.|++.+..++++..+|.+.+.+....... .......|+.++.-..|+..+++++.+|+.|+.+..||+|...
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le-~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLE-KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeee-ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 1 2567889999999999999999986665443322 2223445555788888988788999999999999999999433
Q ss_pred CCCcee-ecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC-CCCCCCCccceecCCCCccccceeeeeccCCCCCc
Q 013086 249 AGSSLC-DLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 325 (449)
Q Consensus 249 ~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (449)
. .... ..-|...|.+|.-+| .+.++++|+.|..|++||.+. ++.+. ..... ....++.++|...
T Consensus 200 ~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------~~~v~--GGVWRi~~~p~~~--- 266 (339)
T KOG0280|consen 200 T-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------KAKVG--GGVWRIKHHPEIF--- 266 (339)
T ss_pred c-eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------cCccc--cceEEEEecchhh---
Confidence 2 1222 124788899998887 788999999999999999984 33321 22222 2235788888743
Q ss_pred eEEEcceecccCCCCCCcceEEEECCCceEE-----EEEecCccceeceeeecCCCCcEEeecC--CCeEE-EEcCCCch
Q 013086 326 LAVIGRYISENYNGAALHPIDFIDITTGQLV-----AEVMDPNITTISPVNKLHPRDDVLASGS--SRSIF-IWRPKEKS 397 (449)
Q Consensus 326 ~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~v~~~~~~~~~l~s~s--dg~i~-iw~~~~~~ 397 (449)
+..++ +..-+-.+|.+.+.+... .....|. .-...- .|.....+|||++ |..++ +|-..+++
T Consensus 267 ----~~lL~----~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd-Sl~YG~-DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 267 ----HRLLA----ACMHNGAKILDSSDKVLEFQIVLPSDKIHD-SLCYGG-DWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ----hHHHH----HHHhcCceEEEecccccchheeeecccccc-ceeecc-ccccccceeeeeeccccceeeeeeeccCC
Confidence 22222 122222556665544322 2222333 222222 5655567899988 88866 88776665
Q ss_pred h
Q 013086 398 E 398 (449)
Q Consensus 398 ~ 398 (449)
.
T Consensus 337 ~ 337 (339)
T KOG0280|consen 337 P 337 (339)
T ss_pred c
Confidence 3
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-11 Score=102.98 Aligned_cols=265 Identities=14% Similarity=0.204 Sum_probs=169.0
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc-----eeeeeecCCCCC---CCCCcccceeEEEEecCCC--EEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-----ALSLMNVNPNGW---HGPRTWRMLYGMDINPEKG--VVL 185 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~ 185 (449)
....|.++.|... |.+|++|..+|.|.++.-.... ....+..+...+ ........|..+.|.++++ .++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 4567899999999 9999999999999999654322 122222222211 1112223478889988764 788
Q ss_pred EEcCCCeEEEEECCCCCCcc------------------ce---------------EEeecCCCceEEEEEcCCCCCEEEE
Q 013086 186 VADNFGFLYLVDARTNSRSG------------------EA---------------ILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 186 ~~~~dg~i~i~d~~~~~~~~------------------~~---------------~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
..+.|.+|++|.+....... .. .-.+.|.--|+++.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 88999999999876432211 00 01123344588999998 8888888
Q ss_pred EeCCCeEEEEEccCCCCCCceeec-C-----CCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccce----
Q 013086 233 CGNDHFARIWDIRRLEAGSSLCDL-P-----HKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIV---- 301 (449)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---- 301 (449)
+. |=.|.+|++.-......+... + ...-|++..|+| ..+.++-.+..|+|++-|++...+--....+.
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 74 778999998754332222222 2 234688999999 56788888899999999998544311111110
Q ss_pred ---ecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC-CCceEEEEEecCc-----------cc
Q 013086 302 ---HSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI-TTGQLVAEVMDPN-----------IT 365 (449)
Q Consensus 302 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~-----------~~ 365 (449)
....+...+ ++-.+.|++. |+|+. .-.--+|++||+ ...+++.+++-|. ..
T Consensus 261 dp~~rsffseiIsSISDvKFs~s---------Gryil----sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS---------GRYIL----SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC---------CcEEE----EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 000111111 1124667766 88887 233378999999 4666777766543 11
Q ss_pred eec---eeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 366 TIS---PVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 366 ~v~---~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
.|. .+ +|+.++.+++||+ ...++++++..|.
T Consensus 328 ~IfdKFec-~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFEC-SWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEE-EEcCCcceEecccccceEEEecCCCCc
Confidence 111 12 6899999999999 9999999976664
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3.7e-12 Score=112.60 Aligned_cols=204 Identities=13% Similarity=0.164 Sum_probs=154.6
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.|+++.-...++ .++....|+-++++.+..+..+ ....+.++++..++. ..+|++|+.+|.|..||.++......+.
T Consensus 138 Dm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 138 DMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cccccCCCccEE-EeecCcceEEEEcccccccccc-ccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeee
Confidence 445543332334 4444567888999988877776 456689999999998 8899999999999999999887777766
Q ss_pred cCCC--CCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC-CEEEEEe
Q 013086 158 VNPN--GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-ELLLSCG 234 (449)
Q Consensus 158 ~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~ 234 (449)
.... ...+......|+++.|+.+|-.+++|+.+|.+.|||+++.++. +..-|....+|..+.|.+.+. +.+++ .
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~q~~v~S-~ 291 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQQNKVVS-M 291 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCCCceEEe-c
Confidence 5433 1122333445999999999999999999999999999998876 335666677899999988433 34444 4
Q ss_pred CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 235 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
....++|||-.+++. +........++.+++-|++.+++++-.++.+..|-+..
T Consensus 292 Dk~~~kiWd~~~Gk~---~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 292 DKRILKIWDECTGKP---MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred chHHhhhcccccCCc---eeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 567899999877554 44445666799999999999999999988888876643
No 245
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.5e-14 Score=130.61 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=148.5
Q ss_pred CCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 59 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 59 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
.+......++|+.|+...+|++|+-.. +.|+.|+..|.|+++++.++...... .+|...|+.+.-+.+ +..+++.+.
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~d-gs~~Ltsss 1163 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVD-GSTQLTSSS 1163 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccc-cccccccccccccCC-cceeeeecc
Confidence 344456678999999999999999887 68999999999999999999988888 789999999999988 555555443
Q ss_pred -CC-eEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee-cCC
Q 013086 139 -DG-TVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH-RKG 214 (449)
Q Consensus 139 -dg-~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~ 214 (449)
.. -..+|++.+ +.....+. .-.++.|+.....-+.|+......+||+.++......+... ...
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~-------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFD-------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred ccCchHHHhccccccCcccccc-------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 33 467898864 22233322 25677788776677778877889999999988765433211 111
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
-.-+++.|+| ...+++- || .+||++..+....+-.+ . .-..-.|+|.|..++..+ -|||++|.+++
T Consensus 1231 y~~n~a~FsP-~D~LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1231 YSNNLAHFSP-CDTLILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred hhccccccCC-CcceEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 1346788999 6666653 55 48999875444433222 1 122346999999988866 48999988764
Q ss_pred C
Q 013086 295 S 295 (449)
Q Consensus 295 ~ 295 (449)
.
T Consensus 1297 h 1297 (1516)
T KOG1832|consen 1297 H 1297 (1516)
T ss_pred h
Confidence 3
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.5e-10 Score=93.30 Aligned_cols=282 Identities=12% Similarity=0.153 Sum_probs=172.9
Q ss_pred CCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCC---CeEEEEeCCC--CceeeeeecCCCCCCCCC
Q 013086 95 KGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLET--GLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 95 d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~--~~~~~~~~~~~~~~~~~~ 167 (449)
+.-|.+|++.+.. ........+.+.++-|+|+|+ .++|+++-.+ |.|--|.++. |.....-.....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g----- 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG----- 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC-----
Confidence 5679999998432 222222347788999999999 8888888654 6777777664 4433222111111
Q ss_pred cccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeecCCCc----------eEEEEEcCCCCCEEEEEeC-
Q 013086 168 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSK----------VVGLHCNPIQPELLLSCGN- 235 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~- 235 (449)
.....+++++++++++++. ..|.|.++-++....+........+.+. +....+.| ++++|++...
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG 165 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG 165 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC
Confidence 1247899999999988875 5579999999775444333333333223 78889999 9988888754
Q ss_pred CCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCC--CCCCCCccceecCCCCcccc
Q 013086 236 DHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFG--NLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (449)
.-.|.+|++..+........ .........|.|+|++++..+.++ +++|.+|..... ++...........++.+...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 34799999985444222211 134556788999999999877775 899999999873 32211111112233444443
Q ss_pred ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC--ceEEEEEecC-ccceeceeeecCCCCcEEeecC--CC
Q 013086 312 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--GQLVAEVMDP-NITTISPVNKLHPRDDVLASGS--SR 386 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~s--dg 386 (449)
.-.+..+|+ |+|+-+. --....|-+|.+.. +++...-... +....... .|++.|++|++++ +.
T Consensus 246 ~aaIhis~d---------GrFLYas--NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 246 AAAIHISPD---------GRFLYAS--NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-NINPSGRFLIAANQKSD 313 (346)
T ss_pred eeEEEECCC---------CCEEEEe--cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-eeCCCCCEEEEEccCCC
Confidence 345566666 7766521 11223677776643 3322211111 11112333 5899999999988 47
Q ss_pred eEEEEcCC--Cch
Q 013086 387 SIFIWRPK--EKS 397 (449)
Q Consensus 387 ~i~iw~~~--~~~ 397 (449)
.|.+|..+ +|+
T Consensus 314 ~i~vf~~d~~TG~ 326 (346)
T COG2706 314 NITVFERDKETGR 326 (346)
T ss_pred cEEEEEEcCCCce
Confidence 78888654 454
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=3.8e-12 Score=120.20 Aligned_cols=276 Identities=12% Similarity=0.111 Sum_probs=180.5
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-----CCCeEEEEeCCCeEEEEeCC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-----NDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~dg~v~iwd~~ 148 (449)
+++++.++-. + +|+.|. .-.|.+||+..+..+..+...+...+. .+. -+.+++++..-+.+..=+..
T Consensus 8 ~~l~~~~~~~--~-~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 8 GPLNLPQLVS--D-YLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccchhhcc--c-eeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh
Confidence 3445555543 2 344433 457999999887654443322222222 111 03345555544333332221
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC-ceEEEEEcCCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KVVGLHCNPIQP 227 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 227 (449)
... ...+ ...+....+..+...++.++.+..+.+||........+......... ...-+-.++ +.
T Consensus 80 ~~~-~~~~------------s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~ 145 (967)
T KOG0974|consen 80 NQI-IERF------------SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EE 145 (967)
T ss_pred hhh-hhhc------------cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cE
Confidence 111 1111 11244455666788899999999999999987665433211111000 112223444 66
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
-++++|+.-+.|.+|+... .. ......+|.+.|.++.|+-+|+++++.|.|.++|+|++.+++... ...+.
T Consensus 146 ~~i~~gsv~~~iivW~~~~-dn-~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fg 216 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE-DN-KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFG 216 (967)
T ss_pred EEEEeccccccEEEEeccc-cC-CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------ccccc
Confidence 7999999999999999983 22 233455899999999999999999999999999999999887643 34555
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CC
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR 386 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg 386 (449)
.....+.+++.|. .+. +++.|-+.++|+. +++.+..+.+|....+..+ +.+++...++|++ ||
T Consensus 217 HsaRvw~~~~~~n-----------~i~---t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~-~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 217 HSARVWACCFLPN-----------RII---TVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKI-AVPIGVIIKVTGGNDS 280 (967)
T ss_pred ccceeEEEEeccc-----------eeE---EeccceEEEEEec-ccceehhhhhhhhcceeEE-EEcCCceEEEeeccCc
Confidence 5556667777774 222 5789999999965 5666668889988899998 8888888999988 99
Q ss_pred eEEEEcCCCc
Q 013086 387 SIFIWRPKEK 396 (449)
Q Consensus 387 ~i~iw~~~~~ 396 (449)
.+++|++...
T Consensus 281 ~lk~~~l~~r 290 (967)
T KOG0974|consen 281 TLKLWDLNGR 290 (967)
T ss_pred chhhhhhhcc
Confidence 9999997653
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=1.2e-10 Score=101.76 Aligned_cols=287 Identities=16% Similarity=0.133 Sum_probs=172.5
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC-----------
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG----------- 140 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg----------- 140 (449)
-.-++..++|||.| .+|++... ..|.+|.-.....+..+. | ..|..+.|+|. +.+|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcc-hheehhhc-cceEEccccchhheeeee--c-CCceecccCcc-cceeeeeccCCccChhhccCCc
Confidence 45578899999999 77877665 459999988776555553 4 46899999999 99999976543
Q ss_pred ----eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc-cceEEeecCCC
Q 013086 141 ----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS-GEAILIHRKGS 215 (449)
Q Consensus 141 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~ 215 (449)
.+.+||+.+|..+..+........ .-.-+.|+-+..++|-. -...++++++ +.... ....... ..
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~------~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~ 174 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYL------GWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PV 174 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCccc------ccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--cc
Confidence 499999999999888765544311 12256677777666554 3346777775 22111 1000011 11
Q ss_pred ceEEEEEcCC-CCCEEEE-----EeCCCeEEEEEccCCCC----------------------------------------
Q 013086 216 KVVGLHCNPI-QPELLLS-----CGNDHFARIWDIRRLEA---------------------------------------- 249 (449)
Q Consensus 216 ~v~~~~~~~~-~~~~l~~-----~~~dg~i~iwd~~~~~~---------------------------------------- 249 (449)
.+....|+|. ++..|+. ++..+.+++|.+.....
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 2444445542 1112221 12233444443321110
Q ss_pred ---------CCceeec-CCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeee
Q 013086 250 ---------GSSLCDL-PHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 317 (449)
Q Consensus 250 ---------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (449)
...+... ...++|...+|.|.++.+++.+ .+..+.++|++..-. +.. .. ...-+..|
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--------~~~-Pe--~~rNT~~f 323 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--------FYF-PE--QKRNTIFF 323 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceE--------Eec-CC--cccccccc
Confidence 1111111 3467888899988777766554 577888888865411 000 00 00114567
Q ss_pred ccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEE-EEecCccceeceeeecCCCCcEEeecC-------CCeEE
Q 013086 318 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA-EVMDPNITTISPVNKLHPRDDVLASGS-------SRSIF 389 (449)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~s~s-------dg~i~ 389 (449)
+|. ++|+....-+...|.|.+||......+. .+.+.. ...+ .|+||++++.+.. |..|.
T Consensus 324 sp~---------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~---~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 324 SPH---------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYC---DWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred cCc---------ccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEe---eccCCceEEEecCCCcccccCcceE
Confidence 776 6666543356677889999987665555 565544 3333 7999999988742 57899
Q ss_pred EEcCCCchh
Q 013086 390 IWRPKEKSE 398 (449)
Q Consensus 390 iw~~~~~~~ 398 (449)
||++.....
T Consensus 391 l~~v~g~~~ 399 (561)
T COG5354 391 LWDVYGAKV 399 (561)
T ss_pred EEEecCchh
Confidence 999876543
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=5.5e-11 Score=110.86 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=131.2
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCC---CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE-EEeCCC-
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG- 140 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg- 140 (449)
.+.+..+...+.+.+|+|+|. .|+.+..+ ..|.+||+.++...... .+...+.+++|+|+ ++.|+ +.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spD-g~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPD-GSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEECCCCC
Confidence 355666777899999999995 55554432 47999999887544333 35566778999999 66554 555444
Q ss_pred -eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCCc
Q 013086 141 -TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 141 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (449)
.|++||+.++....... ... ......|+|+++.|+..+. .+ .|+++|+.+++.. ........
T Consensus 258 ~~i~~~d~~~~~~~~l~~-~~~---------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~ 323 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTN-GPG---------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGY 323 (417)
T ss_pred ccEEEEECCCCCEEECCC-CCC---------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCC
Confidence 58889988775443321 111 1345689999998876654 33 6888888765422 22223345
Q ss_pred eEEEEEcCCCCCEEEEEeCCC---eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEeC
Q 013086 217 VVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDS 288 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~ 288 (449)
...+.|+| ++.+++.++.++ .|.+||+.+... ..+..........|+|++++|+..+.++ .+.+.+.
T Consensus 324 ~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe----EEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 77889999 888888887765 789999876322 1121222345568999999998877654 3444443
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=2.3e-10 Score=106.76 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=116.9
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---CeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.|.++|.......... .+...+....|+|+ +++|+.+..+ ..|++||+.+++........ ....
T Consensus 171 ~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----------~~~~ 237 (417)
T TIGR02800 171 ELQVADYDGANPQTIT--RSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREKVASFP----------GMNG 237 (417)
T ss_pred eEEEEcCCCCCCEEee--cCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----------CCcc
Confidence 5778887654433333 36667899999999 8888776643 47999999988654332211 1155
Q ss_pred EEEEecCCCEEEEE-cCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-C--eEEEEEccCC
Q 013086 174 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-H--FARIWDIRRL 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~ 247 (449)
+++|+|+++.|+.. ..++ .|++||+.++... ....+........|+| +++.|+..+.. + .|+++|+.+.
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 68899999877654 4443 6899998876432 1222222345678999 88877766543 3 5778887653
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGN 292 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~ 292 (449)
+. .....+...+..+.|+|+|++|+.++.++ .|.+||+.++.
T Consensus 313 ~~---~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 313 EV---RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CE---EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 32 11122445567889999999999988776 78999987754
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.9e-10 Score=104.88 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=136.7
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCe---EEEEeCCC--eEEEEeCCCCceeeeeecCCCCCCCCCcccc
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT---VYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRM 171 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (449)
.|.+.|.......... .....+..-.|+|+ ++. +++...+| .|.+.++.+++..........
T Consensus 166 ~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~---------- 232 (428)
T PRK01029 166 ELWSVDYDGQNLRPLT--QEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN---------- 232 (428)
T ss_pred eEEEEcCCCCCceEcc--cCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC----------
Confidence 5667777655443322 24556678899999 653 33444443 577888887765444332211
Q ss_pred eeEEEEecCCCEEEEEcC-CC----eEEEEECCCCCCccceEEee-cCCCceEEEEEcCCCCCEEEEEe-CCCeEEEE--
Q 013086 172 LYGMDINPEKGVVLVADN-FG----FLYLVDARTNSRSGEAILIH-RKGSKVVGLHCNPIQPELLLSCG-NDHFARIW-- 242 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw-- 242 (449)
....+|+|||+.|+.... +| .+..|++..+... ...... .........+|+| ++..|+..+ .+|...+|
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 446789999998887542 22 3444676653211 111111 1112346789999 888777665 45655555
Q ss_pred EccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc
Q 013086 243 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 319 (449)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
++..... ...........+....|+|||+.|+..+.+ ..|.+||+.+++.... . ... . ......|+|
T Consensus 311 ~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L----t-~~~--~--~~~~p~wSp 380 (428)
T PRK01029 311 QIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL----T-TSP--E--NKESPSWAI 380 (428)
T ss_pred ECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc----c-CCC--C--CccceEECC
Confidence 4432111 111111234566788999999999877653 4699999988765221 1 110 0 112578999
Q ss_pred CCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 320 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 320 ~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
+ |++++..........|.++|+.+++........ ...... +|+|-.
T Consensus 381 D---------G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~--g~~~~p-~Ws~~~ 426 (428)
T PRK01029 381 D---------SLHLVYSAGNSNESELYLISLITKKTRKIVIGS--GEKRFP-SWGAFP 426 (428)
T ss_pred C---------CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CcccCc-eecCCC
Confidence 8 444332112334567999999887754443322 222333 677643
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.2e-10 Score=106.54 Aligned_cols=236 Identities=13% Similarity=0.150 Sum_probs=137.6
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CC--eEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.|.++|.......... .+...+....|+|+ ++.|+..+. ++ .|.+||+.+++........ . ...
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g---------~~~ 265 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G---------ING 265 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C---------CcC
Confidence 5667777665443322 36678899999999 777766543 33 5889999887653322111 1 134
Q ss_pred EEEEecCCCEEEE-EcCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccCC
Q 013086 174 GMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~ 247 (449)
..+|+|+++.|+. ...+| .|+++|+.+++.. ....+.......+|+| ++..|+..+. ++ .|+++|+.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 6789999998775 45555 4888898776532 2222233467789999 8887766554 33 4666677654
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
+. ..+. . .........|+|+|++|+..+.+ + .|.++|+.+++... +...... ....|+|+
T Consensus 341 ~~-~~Lt-~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-----lt~~~~d-----~~ps~spd---- 403 (448)
T PRK04792 341 KV-SRLT-F-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-----LTSTRLD-----ESPSVAPN---- 403 (448)
T ss_pred CE-EEEe-c-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-----ccCCCCC-----CCceECCC----
Confidence 32 1221 1 22223457899999998877653 3 45667877765311 1111111 13468888
Q ss_pred ceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 325 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 325 ~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
|+.++..........+.+++. +|.....+..+. +.+... +|+|
T Consensus 404 -----G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~-g~~~~p-~Wsp 446 (448)
T PRK04792 404 -----GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ-GEVKSP-AWSP 446 (448)
T ss_pred -----CCEEEEEEecCCceEEEEEEC-CCCceEECcCCC-CCcCCC-ccCC
Confidence 444432111222345777886 566666665443 334444 6776
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.8e-10 Score=105.36 Aligned_cols=236 Identities=10% Similarity=0.088 Sum_probs=138.7
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---CeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.|.++|.......... .+...+....|+|+ ++.|+..+.+ ..|.+||+.+++........ ....
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~----------g~~~ 246 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE----------GLNG 246 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC----------CCcC
Confidence 4777787765443332 36778999999999 7777665543 36999999888654432211 0144
Q ss_pred EEEEecCCCEEEE-EcCCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccCC
Q 013086 174 GMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~ 247 (449)
..+|+|+|+.|+. ...+| .|++||+.++... .............|+| ++..|+..+. +| .|+++|+.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 6889999998875 44444 6888999876532 2222223456678999 8887766554 33 5777787654
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
+.. .+.. .........|+|+|++|+..+.+ + .|.+||+.+++... +. ... .. ....|+|+
T Consensus 322 ~~~-~lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~----lt-~~~--~~---~~p~~spd---- 384 (430)
T PRK00178 322 RAE-RVTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI----LT-DTS--LD---ESPSVAPN---- 384 (430)
T ss_pred CEE-Eeec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE----cc-CCC--CC---CCceECCC----
Confidence 431 2211 11223457899999999887653 2 58889998765411 11 110 11 13478887
Q ss_pred ceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 325 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 325 ~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
|+.++..........|.++++. |.....+..+. +.+... +|+|
T Consensus 385 -----g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~-g~~~~p-~ws~ 427 (430)
T PRK00178 385 -----GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQ-GEVREP-SWSP 427 (430)
T ss_pred -----CCEEEEEEecCCceEEEEEECC-CCceEECcCCC-CCcCCC-ccCC
Confidence 4444321112223457777774 44444443322 333333 5665
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.8e-10 Score=105.35 Aligned_cols=203 Identities=11% Similarity=0.121 Sum_probs=128.5
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE-EEeCCC-
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG- 140 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg- 140 (449)
..+.+..|...+...+|+|+|++++++...+ ..|.+|++.++...... ...+.+....|+|+ ++.|+ +...+|
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpD-G~~la~~~~~~g~ 266 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPD-GSKLAFVLSKDGN 266 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCC-CCEEEEEEccCCC
Confidence 3455666778899999999995544444333 36889999877554332 23345567899999 76665 555555
Q ss_pred -eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCCc
Q 013086 141 -TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 141 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (449)
.|.+||+.++...... .... ......|+|+++.++..+. +| .|+++|+.+++... + .. ....
T Consensus 267 ~~Iy~~d~~~~~~~~lt-~~~~---------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~--~~~~ 332 (430)
T PRK00178 267 PEIYVMDLASRQLSRVT-NHPA---------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TF--VGNY 332 (430)
T ss_pred ceEEEEECCCCCeEEcc-cCCC---------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ec--CCCC
Confidence 6888899887654322 1111 1456789999998776653 33 68888887665321 1 11 1123
Q ss_pred eEEEEEcCCCCCEEEEEeCC-C--eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCC
Q 013086 217 VVGLHCNPIQPELLLSCGND-H--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSI 289 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 289 (449)
.....|+| +++.|+..+.+ + .|.+||+.++.. ..+. .........|+|+|+.++..+.+ ..|.++++.
T Consensus 333 ~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt---~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 333 NARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT---DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE-EEcc---CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 44678999 88888776643 3 588899876433 1221 22222356899999999877654 346667764
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.1e-11 Score=123.24 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=148.2
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
+..|-..|.++.=+|.. .+.+||+.||.|++|....+..+......-...|+.+.|+.+ |+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeecccC
Confidence 44456778888888988 478999999999999999888887776666689999999999 8888899999999999887
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc---CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
.+.....+.+.. ....+.|-. ..+++++ .++.+.+||..-.....-+-. .|.+.++++++.|
T Consensus 2282 -pk~~~s~qchnk---------~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~--~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNK---------ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT--CHDGGATVLAYAP- 2346 (2439)
T ss_pred -CcceeccccCCc---------cccceeeee--hhhhccccCCCCCcccchhcccCcccceeee--ecCCCceEEEEcC-
Confidence 333333333322 245555543 5566653 567999999765443332223 3445799999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
..++|++|+.+|.|++||++..+....++ . ++ ...++++++..|.|+||++..-.++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~-------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQ-------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhh-------h----hh-hhheeeccCcccceEEEEccccchhh
Confidence 99999999999999999998644433322 1 44 56789999999999999998765543
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.2e-10 Score=102.25 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=125.1
Q ss_pred eeeeccCccEEEEEEeCCCCc--EEEEEcCCC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CC-
Q 013086 67 AVIRYHSRRVTCLEFHPTNNH--ILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DG- 140 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~--~l~t~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg- 140 (449)
+.|..+...+.+-+|+|||.+ ++++...+| .|.+.++.++...... ...+......|+|+ ++.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD-G~~Laf~s~~~g~ 254 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR-KKLLAFISDRYGN 254 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC-CCEEEEEECCCCC
Confidence 334445566778899999954 333544444 5777788776544433 24445567899999 766665542 23
Q ss_pred ---eEEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCe--EEEEECCCCCCccceEEeec
Q 013086 141 ---TVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGF--LYLVDARTNSRSGEAILIHR 212 (449)
Q Consensus 141 ---~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~ 212 (449)
.+.+|++..+. ....+..... ......+|+|||+.|+..+ .+|. |+++++...... ......
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~--------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--~~~lt~ 324 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAF--------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--PRLLTK 324 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCC--------CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--eEEecc
Confidence 34457766531 1112211110 1135678999999877664 4564 444455321111 112222
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC---CCcEEEE
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIW 286 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 286 (449)
....+....|+| +++.|+..+.+ ..|.+||+.+++... + ......+....|+|||+.|+.... ...|.+|
T Consensus 325 ~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L--t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 325 KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-L--TTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-c--cCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 223567889999 88888776543 469999997654321 1 122345677999999998876543 3568888
Q ss_pred eCCCCCC
Q 013086 287 DSIFGNL 293 (449)
Q Consensus 287 d~~~~~~ 293 (449)
|+.+++.
T Consensus 401 dl~~g~~ 407 (428)
T PRK01029 401 SLITKKT 407 (428)
T ss_pred ECCCCCE
Confidence 9876653
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=122.55 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=158.9
Q ss_pred cCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccce
Q 013086 93 DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 93 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
..++...-|..+...... .-+-..|.++.=+|. ..+.+||+.||.|++|....++.+..++.... ..+
T Consensus 2187 n~~~~~~tq~~~~~~~~~---k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------s~v 2254 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGASVMI---KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------SRV 2254 (2439)
T ss_pred cCCccccceecccceeEe---ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc--------chh
Confidence 334444445443332222 225567888888998 88999999999999999998888777654332 348
Q ss_pred eEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe---CCCeEEEEEccCCCC
Q 013086 173 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEA 249 (449)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~ 249 (449)
+.+.|+.+|+.+.++..||.+.+|..... .......|......+.|-. ..+++++ .++.+.+||..-...
T Consensus 2255 tr~~f~~qGnk~~i~d~dg~l~l~q~~pk----~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2255 TRSRFNHQGNKFGIVDGDGDLSLWQASPK----PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhcccCCceeeeccCCceeecccCCc----ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc
Confidence 89999999999999999999999998732 2223334444566777753 5556554 478999999765444
Q ss_pred CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEE
Q 013086 250 GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI 329 (449)
Q Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (449)
...+. ..|.+.++++++-|..++|++|+.+|.|++||++..++...... ++ .
T Consensus 2328 ~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------------~~----------~ 2379 (2439)
T KOG1064|consen 2328 NSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LD----------T 2379 (2439)
T ss_pred cceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------hh----------h
Confidence 33443 46999999999999999999999999999999987665321111 11 0
Q ss_pred cceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 330 GRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 330 g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
..++. +|+..|.|+||++.....++++...
T Consensus 2380 ~~~f~---~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2380 REYFV---TGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred hheee---ccCcccceEEEEccccchhhcCchh
Confidence 34444 7899999999999988887777644
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=6e-10 Score=103.64 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=121.7
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE-EEeCCCe--
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGT-- 141 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~-- 141 (449)
+.+..+...+.+..|+|||++++++...++ .|.+||+.++...... ..........|+|+ ++.|+ +.+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPD-G~~La~~~~~~g~~~ 287 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPD-GKKLALVLSKDGQPE 287 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCC-CCEEEEEEeCCCCeE
Confidence 344455667889999999965444443333 5888898876543322 12334457899999 76655 4566664
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCCceE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|.++|+.+++...... .. ......+|+||++.|+..+. ++ .|+++|+.+++.. .+.. ......
T Consensus 288 Iy~~dl~tg~~~~lt~-~~---------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~--~g~~~~ 353 (448)
T PRK04792 288 IYVVDIATKALTRITR-HR---------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTF--EGEQNL 353 (448)
T ss_pred EEEEECCCCCeEECcc-CC---------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEec--CCCCCc
Confidence 7788888776543221 11 11566789999998876553 33 6777788766532 1111 222344
Q ss_pred EEEEcCCCCCEEEEEeC-CC--eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCC
Q 013086 219 GLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSI 289 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~ 289 (449)
..+|+| ++++|+..+. ++ .|.++|+.++.. ..+. .........|+|+|+.|+..+.+ + .+.+++..
T Consensus 354 ~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt---~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 354 GGSITP-DGRSMIMVNRTNGKFNIARQDLETGAM-QVLT---STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeeECC-CCCEEEEEEecCCceEEEEEECCCCCe-EEcc---CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 578999 8887777654 33 456677765432 1111 11122345799999988776653 3 36677763
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=1.2e-09 Score=100.25 Aligned_cols=274 Identities=15% Similarity=0.067 Sum_probs=163.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 167 (449)
.+++++.++.+..+|..+++...... ........... + +..+++++.++.|..+|..+|+.+.........
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----- 137 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV----- 137 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee-----
Confidence 57777888999999999988776653 12221122222 3 667888889999999999999988776543211
Q ss_pred cccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC--CceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
...... .+..+++++.+|.++.||..+++...+........ ....+.... + ..++.+..++.+..+|.+
T Consensus 138 ----~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 138 ----LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred ----ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEcc
Confidence 111111 35577888889999999999887653321100000 000111121 2 467788888999999998
Q ss_pred CCCCCCceeec-CCC-Cc---EEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeec
Q 013086 246 RLEAGSSLCDL-PHK-RV---VNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 318 (449)
Q Consensus 246 ~~~~~~~~~~~-~~~-~~---v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (449)
+++........ ... .. ...+.-+| .+..+++++.+|.+..||..+|+..-.. ....
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~-------~~~~---------- 271 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR-------DASS---------- 271 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee-------ccCC----------
Confidence 76543221110 000 00 00011111 3567888888999999999888652111 0000
Q ss_pred cCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 319 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 319 ~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
.......+..+. .++.++.|..+|..+|+.+............. ....+..|++++ +|.|+++|..+|+
T Consensus 272 ----~~~p~~~~~~vy---v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss---p~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 272 ----YQGPAVDDNRLY---VTDADGVVVALDRRSGSELWKNDELKYRQLTA---PAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ----ccCceEeCCEEE---EECCCCeEEEEECCCCcEEEccccccCCcccc---CEEECCEEEEEeCCCEEEEEECCCCC
Confidence 011112233333 35678999999999999887663221111111 112356777877 9999999999999
Q ss_pred hhhhhhccc
Q 013086 398 ELVEQKEEM 406 (449)
Q Consensus 398 ~~~~~~~~~ 406 (449)
.+.+++.+.
T Consensus 342 ~~~~~~~~~ 350 (377)
T TIGR03300 342 FVARLKTDG 350 (377)
T ss_pred EEEEEEcCC
Confidence 887766444
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.3e-10 Score=103.22 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=184.6
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee--------------eEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--------------KIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
.....|++|+.+. .++|.|+.||.++|..+.+... ......||.+.|.-+.|+.+ .+.|-+...
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCC
Confidence 4468899999987 5899999999999998764321 11123789999999999998 889999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
+|.|.+|-+-.|.....+..... ...|.+++|+.+|..++....||.|.+=.+..++.-.+-+.. ....
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRn-------KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~ 160 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRN-------KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLA 160 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcC-------ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----hecc
Confidence 99999999988876655533222 234999999999999999999999988777665433222111 1355
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCC-----Cceeec----CCCCcEEEEEEc--------CCCCEEEEeeCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAG-----SSLCDL----PHKRVVNSAYFS--------PSGSKILTTSQDN 281 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~----~~~~~v~~~~~~--------~~~~~l~~~~~dg 281 (449)
.+.|++ +...++.+-..|.+.+||....-.. ..+... .....|..+.|. |+...|+++...|
T Consensus 161 hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 161 HVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred ceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 788999 8888888888999999997532110 001100 112235556664 4778899999999
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
.+.|..-..... ..+ +..........|+++ ...+++.|.-.... .-...+.|.+|.. -|+.+.++..
T Consensus 240 r~QiMR~eND~~-----Pvv----~dtgm~~vgakWnh~--G~vLAvcG~~~da~-~~~d~n~v~Fysp-~G~i~gtlkv 306 (1189)
T KOG2041|consen 240 RMQIMRSENDPE-----PVV----VDTGMKIVGAKWNHN--GAVLAVCGNDSDAD-EPTDSNKVHFYSP-YGHIVGTLKV 306 (1189)
T ss_pred eehhhhhcCCCC-----CeE----EecccEeecceecCC--CcEEEEccCccccc-CccccceEEEecc-chhheEEEec
Confidence 888764322111 111 111122346789998 23444444322210 1112235666653 5667777766
Q ss_pred CccceeceeeecCCCCcEEeecCCCe
Q 013086 362 PNITTISPVNKLHPRDDVLASGSSRS 387 (449)
Q Consensus 362 ~~~~~v~~v~~~~~~~~~l~s~sdg~ 387 (449)
+. ..|+++ +|-..|-.+|.+-|+.
T Consensus 307 pg-~~It~l-sWEg~gLriA~Avdsf 330 (1189)
T KOG2041|consen 307 PG-SCITGL-SWEGTGLRIAIAVDSF 330 (1189)
T ss_pred CC-ceeeee-EEcCCceEEEEEecce
Confidence 55 556666 5655554444444433
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=1e-09 Score=88.42 Aligned_cols=206 Identities=12% Similarity=0.029 Sum_probs=139.5
Q ss_pred EEEEeCC----CCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 78 CLEFHPT----NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 78 ~~~~~~~----~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
.+.|-|. ..-+||.|+..|...+|...+......+-..|...|+-+.=..+....+..++.|.++++.+++.+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556552 113689999999999999987665544434455444333222222345677788889999888765443
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
....... ....+++++++++++++.+....|.+|.+..................-.+..|+. ....+|++
T Consensus 152 ~~~h~~~---------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~ 221 (344)
T KOG4532|consen 152 FAVHNQN---------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVV 221 (344)
T ss_pred ceeeccc---------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEE
Confidence 3332211 1278899999999999999999999999876543322222222223456778888 88899999
Q ss_pred eCCCeEEEEEccCCCCCCcee---ecCCCCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCC
Q 013086 234 GNDHFARIWDIRRLEAGSSLC---DLPHKRVVNSAYFSPSGS--KILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+.||++.|||++......... ...|.+.+..+.|++.|. +|+..-.-+.+.+-|++++.-
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 999999999999765533222 125889999999998553 444444467899999998764
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.1e-08 Score=92.10 Aligned_cols=264 Identities=16% Similarity=0.198 Sum_probs=155.3
Q ss_pred cEEEEEEeCCCCcEEEEEcC----CCcEEEEeCcCC--ee--eEEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEEEE
Q 013086 75 RVTCLEFHPTNNHILLSGDK----KGQVGVWDFYKV--SE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCT 145 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~----d~~i~vwd~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iw 145 (449)
.-.-++++|++. +|.+... ++.|..|.+... .. +... .........++++|+ +++|+++.. +|.|.++
T Consensus 38 ~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~-g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 38 NPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD-GRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT-SSEEEEEETTTTEEEEE
T ss_pred CCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC-CCEEEEEEccCCeEEEE
Confidence 455688899984 5555544 678999988764 22 2222 224455678999999 888887764 8999999
Q ss_pred eCCC-Cceeeeee---cC-CCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCC-ccc-eEEeecCCCce
Q 013086 146 DLET-GLALSLMN---VN-PNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSR-SGE-AILIHRKGSKV 217 (449)
Q Consensus 146 d~~~-~~~~~~~~---~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~-~~~~~~~~~~v 217 (449)
++.. +....... .. ..............++.++|+++++++.. ....|.+|++..... +.. .......+...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9987 43333211 10 00001112223478999999999888864 345899999977552 111 11122344568
Q ss_pred EEEEEcCCCCCEEEE-EeCCCeEEEEEccCCC----CCCceeec----CCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEe
Q 013086 218 VGLHCNPIQPELLLS-CGNDHFARIWDIRRLE----AGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWD 287 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~----~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd 287 (449)
..++|+| +++++.+ .-.++.|.++++.... ....+... ........|.++|+|++|+++.. .+.|.+|+
T Consensus 195 Rh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 9999999 7776654 4557889999987211 11111111 11225788999999999887664 67899999
Q ss_pred CC--CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEEC--CCceEEEEE
Q 013086 288 SI--FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI--TTGQLVAEV 359 (449)
Q Consensus 288 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~ 359 (449)
+. +|.+. ....... ....+..+.++|+ |+++.. +...++.|.+|++ .+|.+...-
T Consensus 274 ~d~~~g~l~-~~~~~~~-----~G~~Pr~~~~s~~---------g~~l~V--a~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 274 LDPATGTLT-LVQTVPT-----GGKFPRHFAFSPD---------GRYLYV--ANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ECTTTTTEE-EEEEEEE-----SSSSEEEEEE-TT---------SSEEEE--EETTTTEEEEEEEETTTTEEEEEE
T ss_pred EecCCCceE-EEEEEeC-----CCCCccEEEEeCC---------CCEEEE--EecCCCeEEEEEEeCCCCcEEEec
Confidence 94 23321 1111111 1112346777887 665552 3345677888865 577765544
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.3e-11 Score=109.01 Aligned_cols=217 Identities=15% Similarity=0.208 Sum_probs=148.6
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC-------eeeEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
...+..+.||+..|..++--.+. +-+++++.|.+|++|.+... .+..++ +.|..+|.++.|..+ .+.+++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~-lr~i~S 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD-LRSIAS 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec-cceeee
Confidence 44556789999999998766555 46899999999999998642 244444 679999999999987 666655
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEe--ec
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILI--HR 212 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~ 212 (449)
+ ||-|++||.--+..+..+.-.+.. .....|.++. +-+...++++ +...+|+++|.+......+.... ..
T Consensus 802 c--D~giHlWDPFigr~Laq~~dapk~----~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMEDAPKE----GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred c--cCcceeecccccchhHhhhcCccc----CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 4 788999998877766544322211 1111233332 1133444444 67889999999998766554433 22
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE-EeCCCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI-WDSIFG 291 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~ 291 (449)
...-+.++++.+ .++.++++-..|.|.+.|.+++......+. .......++ .|..+.|+....|.++.+ |-.-.|
T Consensus 875 Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 875 PNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 334688999999 999999999999999999998665433322 222222222 345566777777888888 877665
Q ss_pred CC
Q 013086 292 NL 293 (449)
Q Consensus 292 ~~ 293 (449)
..
T Consensus 951 im 952 (1034)
T KOG4190|consen 951 IM 952 (1034)
T ss_pred ee
Confidence 54
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.27 E-value=2.8e-10 Score=91.09 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=122.0
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-----------cccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-----------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
|+.+.+.-+. .|+++..++.+.......+.+..... ..|.++-.+-+.+-. ++.++++..||.+.+
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc-CCceEecCCCceEEE
Confidence 6777777654 57888777776665543332221110 123322222222222 667999999999999
Q ss_pred EeCCCCceee-eeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-----CCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 145 TDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-----NFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 145 wd~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++.+.-.... .+..... ...+..+...++++.++. .-+..+.|+++..+.. ...+.....|.
T Consensus 116 ~s~~~~~~~~~~i~~~~~---------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~~~~~~v~ 183 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHS---------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL---IPSKKALDAVT 183 (319)
T ss_pred EechHHHhhhhhcccccc---------cccccceeecccEEecCCcceEeeccceeeecccccccc---cccccccccch
Confidence 9987521111 1100000 012222333445444432 2235566666554322 12223333599
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 290 (449)
+++-+|...+++++|+.||.+-+||.++......+ ...|..+|..+-|+| ++..|+++++||.+..||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999977889999999999999999986432222 226999999999999 888999999999999999854
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=1.3e-08 Score=103.60 Aligned_cols=211 Identities=12% Similarity=0.139 Sum_probs=128.1
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec-c------------cCCceeEEEEeeCCCCeEEEEe-CCCeE
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-I------------HSCIVNNIRFNPTNDGTVYAAS-SDGTV 142 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~-~------------h~~~v~~~~~~~~~~~~l~s~~-~dg~v 142 (449)
..+++++.+.+++++-+.++.|++||..... ...+.. + +-.....+++.++ ++.|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-KNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCC-CCEEEEEeCCCceE
Confidence 3578887654678888888999999986543 222211 1 1124688999988 66655554 45789
Q ss_pred EEEeCCCCceeeeeecCCCC--CCCC-----CcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEee---
Q 013086 143 SCTDLETGLALSLMNVNPNG--WHGP-----RTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIH--- 211 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~--~~~~-----~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 211 (449)
+++|..++............ ..+. ........++++|+ +.++++...++.|++||..++.... ....
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--EecCCcc
Confidence 99998876533221110000 0000 01123568999994 5566666788899999987654210 0000
Q ss_pred ----------cCCCceEEEEEcCCCCC-EEEEEeCCCeEEEEEccCCCCCCc----------eeecC---------CCCc
Q 013086 212 ----------RKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSS----------LCDLP---------HKRV 261 (449)
Q Consensus 212 ----------~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~---------~~~~ 261 (449)
..-.....++++| ++. ++++-+.++.|++||+.++..... +..++ .-..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0112456799999 766 666667789999999875432100 00000 0112
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 262 VNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 262 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
...++++++|.++++-+.++.|++||..++.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 3578888888877777788888888886554
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=3.3e-09 Score=88.50 Aligned_cols=212 Identities=11% Similarity=0.047 Sum_probs=145.2
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCc-CCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY-KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
..++.+.||.+.|+....-|..+ -+++.+.|.+++||--. .++.-..+......+++++.+.+. ...|+.|-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceE
Confidence 34577899999999988888664 48899999999999543 333333333335678999999998 8899999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
.-+.+...-....+.- .-..+...+..+-|+.....+++.+.|..+.---.+.+..+....... ..+++.+
T Consensus 93 tefs~sedfnkm~~~r-----~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----~~t~~~~ 163 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLK-----DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----PASALQF 163 (404)
T ss_pred EEEEhhhhhhhcchhh-----hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----cCCCCce
Confidence 9887653221111100 011222348888888888999999998877655555555443322111 1222222
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.- .+...|...|.|..-.+............+|.+.+.++.|.|....|.+|..|..+.+||+-
T Consensus 164 d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 164 DA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 21 15556666677776666544444444445899999999999999999999999999999984
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.5e-10 Score=106.53 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=145.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc-----eeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-----VNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
.|....+..+. ..++.+..+..+.+||........... +... ..-+.++++ .-++++|+.-+.|.+|+...
T Consensus 89 wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 89 WIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred cccccchhhhc-ceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccc
Confidence 34444444454 467777778899999998776665553 3322 122234555 66889999999999999873
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
...-..+..+.. .+..+.++.+|+++++.+.|..+++|++.+.+.... ....|...+..+.++| + .
T Consensus 165 dn~p~~l~GHeG---------~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~-n--~ 230 (967)
T KOG0974|consen 165 DNKPIRLKGHEG---------SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLP-N--R 230 (967)
T ss_pred cCCcceecccCC---------ceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEecc-c--e
Confidence 222222333332 399999999999999999999999999999887652 4556777999999998 4 9
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeec-CC-CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDL-PH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
+++++.|.+.++|+.... .+..+ +| ...|..++..++...++|++.|+.+++|++....
T Consensus 231 i~t~gedctcrvW~~~~~----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGT----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eEEeccceEEEEEecccc----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999999976532 22222 33 4578999999999999999999999999986543
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=2.5e-08 Score=99.71 Aligned_cols=305 Identities=12% Similarity=0.129 Sum_probs=180.8
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEE----eCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVW----DFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vw----d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
..+.|.++.|.++.. -++.+..+|.|.+. +.........- .-...|.+++|||| ..+|+..+.+++|.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSPD-EELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECCC-cCEEEEEeCCCEEEEEec
Confidence 457899999999984 57777889999999 55544333322 25678999999999 999999998988877642
Q ss_pred CCCceeeeeecCCCCC----------------------C-------CC----------CcccceeEEEEecCCCEEEEEc
Q 013086 148 ETGLALSLMNVNPNGW----------------------H-------GP----------RTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~----------------------~-------~~----------~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
+-..+....+....+ + .+ .....-..++|-.||.++|+.+
T Consensus 150 -~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 -DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred -cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 222221111110000 0 00 0112356788999999999976
Q ss_pred C------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCceeec-CC
Q 013086 189 N------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDL-PH 258 (449)
Q Consensus 189 ~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~~ 258 (449)
. ...+++|+-. +.... ....-.+--.+++|.| .|++||+... ...|.+|.-+..+.+...... ..
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~s---tSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQS---TSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEe---ccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCC
Confidence 4 2578999876 22111 1111122345789999 9999998765 456788876544333322111 35
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEE--cceeccc
Q 013086 259 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI--GRYISEN 336 (449)
Q Consensus 259 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~ 336 (449)
...|..+.|++++..||..-.|. |.+|-..+...- .+. ...+........+.|+|..+....... |.+....
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY--LKq---ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY--LKQ---EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE--EEE---EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 66899999999999999977664 999987654320 011 111111111224889998665444332 3332211
Q ss_pred C----------CCCCCcceEEEECCCceE-------------EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 337 Y----------NGAALHPIDFIDITTGQL-------------VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 337 ~----------~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
+ .....+.+-+-|-.+-.. ...+. -...+..+ +|++++..+++-. ||.|.+|.
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~--~~~~v~~v-af~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE--LPSPVNDV-AFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc--CCCCcEEE-EEeCCCCeEEEEECCCCEEEEE
Confidence 1 011233444444322110 01111 12456677 8999887677655 99999998
Q ss_pred CCC
Q 013086 393 PKE 395 (449)
Q Consensus 393 ~~~ 395 (449)
...
T Consensus 455 ~~~ 457 (928)
T PF04762_consen 455 WDL 457 (928)
T ss_pred ecC
Confidence 544
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4.3e-10 Score=100.35 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=139.8
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc------C-------------CCCCEEEEEeCCCeE
Q 013086 179 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN------P-------------IQPELLLSCGNDHFA 239 (449)
Q Consensus 179 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 239 (449)
|...++|....||.+++|+...++....+.......+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345689999999999999999887665544333333344555442 1 144578889999999
Q ss_pred EEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc
Q 013086 240 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 319 (449)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
.+|++..++....+..-.|.+.|+++.++.+-..|.+++.|+.+..|+........... ........++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--------~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--------EQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec--------cCCCccceEEEcC
Confidence 99999887665555555799999999999999999999999999999998766432110 1111122456666
Q ss_pred CCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC-----CcEEeecC--CCeEEEEc
Q 013086 320 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-----DDVLASGS--SRSIFIWR 392 (449)
Q Consensus 320 ~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~~~l~s~s--dg~i~iw~ 392 (449)
+ |..+. ...++|.+||+++++.+.+|.+|. +.+.++ +|..+ |.++.++. +..+.+|-
T Consensus 155 D---------~~~l~-----~as~~ik~~~~~~kevv~~ftgh~-s~v~t~-~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 155 D---------GKILL-----TASRQIKVLDIETKEVVITFTGHG-SPVRTL-SFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred C---------CCEEE-----eccceEEEEEccCceEEEEecCCC-cceEEE-EEEEeccccccceeeeccccccceeEEE
Confidence 6 44443 345789999999999999999887 778777 77666 67777654 67788887
Q ss_pred CCC
Q 013086 393 PKE 395 (449)
Q Consensus 393 ~~~ 395 (449)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 654
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.7e-09 Score=94.52 Aligned_cols=189 Identities=13% Similarity=0.212 Sum_probs=140.7
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecc--cCCceeEEEEe------e-------------CCCCeEEEEeCCCeEEEE
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFN------P-------------TNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~------~-------------~~~~~l~s~~~dg~v~iw 145 (449)
.++|....||.+++|+..+++....+.+. -.+..++..|. | .+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 58899999999999999887765554321 23344445552 1 113567788889999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++..|+....+... .+...+.++.++.+-..|.+++.|..+..|+........ ........+.+++++|
T Consensus 86 s~~~g~it~~~st~-------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 86 SVAGGEITAKLSTD-------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLVSSLCISP- 154 (541)
T ss_pred EecCCeEEEEEecC-------CCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCccceEEEcC-
Confidence 99999988877532 223458999999999999999999999999998876543 2333444689999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC-----CCEEEEee-CCCcEEEEeCCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-----GSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~vwd~~~ 290 (449)
++..+++++ +.|.+||+.+.+. .....+|.++|.++.|--+ |.+++++. .+..+.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999987 6899999987444 3333489999999999876 66666543 466788887654
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1.3e-09 Score=88.96 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=132.0
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE-EEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-cee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LAL 153 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~ 153 (449)
-.++.|++.+. -++++..+|.+.+-+........ ...+.|.-++....|+..+.+++++|+.|+.+..||++.. +.+
T Consensus 124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34677888774 47777788888865554433322 2337899999999999877889999999999999999833 222
Q ss_pred ee-eecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 154 SL-MNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 154 ~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
.. ...+.. .|.++.-+| .+.++++|+.|-.|++||.+....+. ....-++.|..+.++|.....++
T Consensus 203 ~~n~kvH~~---------GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl---~~~~v~GGVWRi~~~p~~~~~lL 270 (339)
T KOG0280|consen 203 WHNSKVHTS---------GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL---FKAKVGGGVWRIKHHPEIFHRLL 270 (339)
T ss_pred eecceeeec---------ceEEEecCCCCCceEEEeccccceeeeehhcccCcc---ccCccccceEEEEecchhhhHHH
Confidence 22 222222 377777766 46799999999999999999754332 11223357999999995443333
Q ss_pred EEeCCCeEEEEEccCCCCCC--ceeec-CCCCcEEEEEEcCCCCEEEEeeC-CCcEE-EEeCCCC
Q 013086 232 SCGNDHFARIWDIRRLEAGS--SLCDL-PHKRVVNSAYFSPSGSKILTTSQ-DNRLR-IWDSIFG 291 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~-vwd~~~~ 291 (449)
.+..-.-.+|-+........ .+... .|.+-...-.|......|++++. |+.++ +|-.-++
T Consensus 271 ~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 271 AACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 33333446666665433321 11111 46666666677555567888764 66655 7765444
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5e-09 Score=96.59 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=143.5
Q ss_pred cceeeeccCccEEEEEEeCC-----------CCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC---C
Q 013086 65 NCAVIRYHSRRVTCLEFHPT-----------NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN---D 130 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~-----------~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~---~ 130 (449)
.++.+..|+..|+.+.|.|. ..-+||++...|.|.+||......+..+ ..|..++..++|-+.. .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcch
Confidence 35677789999999999873 2236788888999999999988777776 5688999999998752 2
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCC---Cccc
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNS---RSGE 206 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~ 206 (449)
..|++-....+|.+|+..+|+.........+. ..|+.+.| |.+.+..-+..|.+.+.+.-... ...+
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i---------Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI---------LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcc---------eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 56777777889999999999988877655443 66788888 55677777777777776643221 1111
Q ss_pred eEEeecC-C-------------------------CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCC
Q 013086 207 AILIHRK-G-------------------------SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR 260 (449)
Q Consensus 207 ~~~~~~~-~-------------------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (449)
.+++... . .....++|+|.-.+. +.......+.++|+.-......+.. ..+
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~-lfi~~prellv~dle~~~~l~vvpi--er~ 273 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI-LFITFPRELLVFDLEYECCLAVVPI--ERG 273 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce-EEEEeccceEEEcchhhceeEEEEe--ccC
Confidence 1111110 0 012235678833343 3344577899999975444333332 233
Q ss_pred cEEEEEEcCC--CCEEEEeeCCCcEEEEeCCC
Q 013086 261 VVNSAYFSPS--GSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 261 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+.-+.|-|+ ...|.+...||.+.+|--+.
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 3445666664 45788999999999997654
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.9e-10 Score=97.26 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=150.8
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC--CeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEEEEeCC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLE 148 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~ 148 (449)
|.+.|+.+..... .++.+++.||.++.|.-.. +.........|...|.+++.+.+ +-++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence 7888888877665 4899999999999998654 22223333678899999999998 888999777 9999999998
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCC--CEEEEE-cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
+-..+..+....-+ . ..++..++.. ..++++ ..+|.+.++|-....+.... .-.-+..+|..+.++|
T Consensus 85 n~DminmiKL~~lP-------g-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-fkklH~sPV~~i~y~q- 154 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP-------G-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-FKKLHFSPVKKIRYNQ- 154 (558)
T ss_pred ccchhhhcccccCC-------C-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-ecccccCceEEEEeec-
Confidence 76655444332211 0 1122222221 144443 56789999998776533222 2223445899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccC-CCCCCc------------eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 226 QPELLLSCGNDHFARIWDIRR-LEAGSS------------LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
-+..+++....|.|.-|.... .+.... +..........++.|+|++..+.+-+.|..|+++++.+|+
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 888999999999999998762 111000 0001234567899999999999999999999999999999
Q ss_pred CCCCCccc
Q 013086 293 LDSPSREI 300 (449)
Q Consensus 293 ~~~~~~~~ 300 (449)
+.+...+.
T Consensus 235 lvqeiDE~ 242 (558)
T KOG0882|consen 235 LVQEIDEV 242 (558)
T ss_pred hhhhhhcc
Confidence 87654443
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=2.9e-08 Score=86.61 Aligned_cols=170 Identities=12% Similarity=0.082 Sum_probs=124.8
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC-eEEEEeCCCCceeeeeecCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-TVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
.+++..|. |...|.+...+..+. .+|...|.-..+.-+ +.-++.|..|| .+-++|.++++.......
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e~~------- 400 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIEKD------- 400 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEeeCC-------
Confidence 46777664 677777765554433 458888999999888 77889999998 899999998875443321
Q ss_pred CCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC----eEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----FARI 241 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i 241 (449)
...|.++..+++|+.++++.....+.+.|+.++.... .-....+-|+.++|+| +++++|-+--+| .|++
T Consensus 401 ---lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 401 ---LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcC-CceeEEEecCcceeeeeEEE
Confidence 1239999999999999999999999999999987542 1122334699999999 999999887665 6899
Q ss_pred EEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee
Q 013086 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
+|+...+. .......+.=.+-+|.|++++|..-+
T Consensus 474 ydm~~~Ki---y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKI---YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeE---EEecCCcccccCcccCCCCcEEEEEe
Confidence 99976333 22222233335578899999886654
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=8.6e-08 Score=87.98 Aligned_cols=264 Identities=18% Similarity=0.163 Sum_probs=152.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 167 (449)
.++.++.++.+..+|..+++...... ....+.+.-.. . +..++.++.+|.|..||..+|+.+............ .
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~-~ 181 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL-R 181 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee-c
Confidence 46677889999999998888776653 22222221111 2 457777888999999999999988776543221100 0
Q ss_pred cccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC-Cc---eEEEEEcC-CCCCEEEEEeCCCeEEEE
Q 013086 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SK---VVGLHCNP-IQPELLLSCGNDHFARIW 242 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~~~~~dg~i~iw 242 (449)
. ...... .+..++++..+|.+..+|+++++............ .. ...+.-+| ..+..+++++.+|.++.|
T Consensus 182 ~---~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 G---SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred C---CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 0 001111 13467888889999999998887543221110000 00 00011111 034577778889999999
Q ss_pred EccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 243 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
|..+++..... .... ..... ..+..+++++.+|.+..+|..+|+..-... ..... .
T Consensus 257 d~~tG~~~W~~---~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~------~~~~~-----~------- 312 (377)
T TIGR03300 257 DLRSGRVLWKR---DASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND------ELKYR-----Q------- 312 (377)
T ss_pred ECCCCcEEEee---ccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc------cccCC-----c-------
Confidence 99875442221 1111 11222 256778888899999999998886532110 00000 0
Q ss_pred CCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEE
Q 013086 323 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIW 391 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw 391 (449)
.....+.+..+. .++.+|.|+++|..+|+.+.++..+.. .+.....+ .+++ |+.++ ||.|+.|
T Consensus 313 ~ssp~i~g~~l~---~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~-~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAVVGGYLV---VGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVV-VGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred cccCEEECCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEE-ECCE-EEEEeCCceEEEe
Confidence 011112244444 577889999999999999998875542 22211012 2344 55555 9999876
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=7.2e-07 Score=75.70 Aligned_cols=219 Identities=12% Similarity=0.145 Sum_probs=141.6
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcC---CCcEEEEeCcCC--eeeEEEe-cccCCceeEEEEeeCCCCeEEEEeC-CCe
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKV--SEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASS-DGT 141 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~---d~~i~vwd~~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~-dg~ 141 (449)
+-.+.+..+-|+|+|++ +.|.++-. +|.|..|.++.. .....-. .....+...++++++ +++++++.. .|.
T Consensus 35 ~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~ 112 (346)
T COG2706 35 LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGS 112 (346)
T ss_pred hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC-CCEEEEEEccCce
Confidence 34466778889999998 56666643 578888888753 3222111 123344488999999 888888876 689
Q ss_pred EEEEeCCC-Cceeee---eecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCccceEEeecCCCc
Q 013086 142 VSCTDLET-GLALSL---MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 142 v~iwd~~~-~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (449)
|.++-++. |..... +...............+....+.|+++++++.+- --.|.+|++..+............+.-
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 99999865 433222 1111111111111222778889999999988764 348999999976654332222244556
Q ss_pred eEEEEEcCCCCCEEEEEe-CCCeEEEEEccCC-CCCCceee---c----CCCCcEEEEEEcCCCCEEEEeeC-CCcEEEE
Q 013086 217 VVGLHCNPIQPELLLSCG-NDHFARIWDIRRL-EAGSSLCD---L----PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIW 286 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~---~----~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw 286 (449)
...|.|+| ++++..+.. .+++|.+|..... .....++. + ........|.++|+|++|.++.. ...|.+|
T Consensus 193 PRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 193 PRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred cceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 88999999 888776655 4889999998763 11112221 1 23445678999999999988764 3478888
Q ss_pred eCCC
Q 013086 287 DSIF 290 (449)
Q Consensus 287 d~~~ 290 (449)
.+..
T Consensus 272 ~V~~ 275 (346)
T COG2706 272 SVDP 275 (346)
T ss_pred EEcC
Confidence 7753
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=4.7e-10 Score=99.32 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=157.8
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-------ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 186 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 186 (449)
.+|...|..++--.+ .+-+++++.|.+|++|.++.. .+..++..+.. .|..+.|-.+.+++++
T Consensus 732 ~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk---------~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK---------PIHDIGFLADLRSIAS 801 (1034)
T ss_pred cCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccC---------cccceeeeeccceeee
Confidence 679999999887766 888999999999999998642 23344444333 3888888888777665
Q ss_pred EcCCCeEEEEECCCCCCccceEEeecC--CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCc
Q 013086 187 ADNFGFLYLVDARTNSRSGEAILIHRK--GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRV 261 (449)
Q Consensus 187 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~ 261 (449)
.||.|.+||.--+....+......+ .+.|.++.--. ..-+++.++...+|+++|.+..+-...++.. +....
T Consensus 802 --cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 802 --CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVD-RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred --ccCcceeecccccchhHhhhcCcccCCCceeEecccCc-chheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 5789999999877766544332222 22344443221 2234444578899999999986655555443 34567
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC--ceEEEcceecccCCC
Q 013086 262 VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE--SLAVIGRYISENYNG 339 (449)
Q Consensus 262 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 339 (449)
+.+++..+.|++++++-..|.|.+.|.++|+.+. .|.|..... ..+.+.++++ ..
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN--------------------swrpmecdllqlaapsdq~L~---~s 935 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVIN--------------------SWRPMECDLLQLAAPSDQALA---QS 935 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceec--------------------cCCcccchhhhhcCchhHHHH---hh
Confidence 8999999999999999999999999999998643 222221110 0111234444 55
Q ss_pred CCCcceEE-EECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 340 AALHPIDF-IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 340 ~~d~~i~i-wd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
..|.++.+ |...+|....+...+. .... ....-|..|+++. ...+.+|.
T Consensus 936 aldHslaVnWhaldgimh~q~kppp-epah---flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPP-EPAH---FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCC-cchh---hhhccCceeEEeccCcEEEEEe
Confidence 67788888 9888887766655332 2222 1233466788877 55667774
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=5.4e-08 Score=99.19 Aligned_cols=216 Identities=12% Similarity=0.149 Sum_probs=137.9
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc---------------CCceeEEEEeeCCCCeEEEEeCCC
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH---------------SCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
-..++++++++.++++-...+.|+++|+.++........+. -.....++|+|+++.++++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 46788888874444554556789999987754332211110 123468999996466777777889
Q ss_pred eEEEEeCCCCceeeeeecCC-----CC-CCCCCcccceeEEEEecCCCEEE-EEcCCCeEEEEECCCCCCccc-------
Q 013086 141 TVSCTDLETGLALSLMNVNP-----NG-WHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGE------- 206 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~------- 206 (449)
.|++||..++.... +.... .. ............++++|+++.|+ +-..++.|++||+.++.....
T Consensus 706 ~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 706 QIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred eEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 99999998775432 21110 00 00011123467899999998554 556678999999986542100
Q ss_pred ---eEEeec--------CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-----------cCCCCcEEE
Q 013086 207 ---AILIHR--------KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-----------LPHKRVVNS 264 (449)
Q Consensus 207 ---~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~ 264 (449)
...... .......+++++ +++++++-+.++.|++||..+......... .+.-.....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000000 011346889999 888999999999999999875332111100 011235678
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
|+++++|+++++-+.++.|++||+.+++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999888888899999999998765
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=1.4e-07 Score=83.03 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=141.0
Q ss_pred EeCCCCcEEEEEc---------CCCcEEEEeCcCCeeeEEEeccc------CCceeEEEEeeCCCCeEEEEe-C-CCeEE
Q 013086 81 FHPTNNHILLSGD---------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNPTNDGTVYAAS-S-DGTVS 143 (449)
Q Consensus 81 ~~~~~~~~l~t~~---------~d~~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~-~-dg~v~ 143 (449)
++|+|..++++.+ .+..|.+||..+.+....+..+- ......++++|+ +++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEE
Confidence 8999965555666 68899999999998887774221 223447899999 88888766 3 78999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEeecCCCceE-EEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVV-GLH 221 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~ 221 (449)
+.|+.+++.+..+..+.... . .....-..+..+.|+..+... ..+|....=. ....+....++. .-.
T Consensus 132 VvD~~~~kvv~ei~vp~~~~-v-y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~---------~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYH-I-FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP---------TEVFHPEDEYLINHPA 200 (352)
T ss_pred EEECCCCcEEEEEeCCCCcE-E-EEecCCccEEEeecCceEEEEecCCCceEEee---------eeeecCCccccccCCc
Confidence 99999999998887633210 0 000001111223333332221 2222211000 000111000000 003
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCC--CCceeecC--------CCCcEEEEEEcCCCCEEEEee----------CCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLP--------HKRVVNSAYFSPSGSKILTTS----------QDN 281 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~----------~dg 281 (449)
+.+.++.++.+... |.|.+.|+..... ...+.... ..+.+.-++++|+++.+++.. ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 34436666666555 9999999643221 11111111 233444599999999888743 225
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc-eecccCCCCCCcceEEEECCCceEEEEE
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
.|.++|..+++..... .. ...+..+.++|+ |+ .+.. +...++.|.++|..+++.+.++
T Consensus 280 ~V~ViD~~t~kvi~~i-------~v--G~~~~~iavS~D---------gkp~lyv--tn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKI-------EL--GHEIDSINVSQD---------AKPLLYA--LSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEE-------eC--CCceeeEEECCC---------CCeEEEE--eCCCCCcEEEEECcCCeEEeee
Confidence 7999999887763211 11 112346788888 44 2220 2234677999999999999988
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=3e-09 Score=87.58 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=142.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-eeE---EEecccC------------CceeEEEEeeC-CCCeEEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKI---VYGNIHS------------CIVNNIRFNPT-NDGTVYA 135 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-~~~---~~~~~h~------------~~v~~~~~~~~-~~~~l~s 135 (449)
.+.|+++.|...| .+|++|...|.|.++.-.... +.. +-.++|. ..|..+.|..+ +...++.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4679999999999 699999999999999876543 111 1113342 45888988755 3456777
Q ss_pred EeCCCeEEEEeCCCCceee--------eeecC--------------------------CCCCCCCCcccceeEEEEecCC
Q 013086 136 ASSDGTVSCTDLETGLALS--------LMNVN--------------------------PNGWHGPRTWRMLYGMDINPEK 181 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~--------~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~ 181 (449)
.+.|.+|++|.+....... .+..+ +.......+...+.++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999886431110 00000 0001112233457888898888
Q ss_pred CEEEEEcCCCeEEEEECCCCCCccceEEeecCC-----CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC----CCc
Q 013086 182 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-----SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSS 252 (449)
Q Consensus 182 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~ 252 (449)
..++++. +-.|.+|++.-......+.....+. .-|++..|+|...+.+.-.+..|.|++-|++.... .+.
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8777654 5688899887544332222222221 24788999997788888888999999999984321 000
Q ss_pred eeec----------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 253 LCDL----------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 253 ~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
+... +....|..+.|+++|+++++-+. -++++||++..+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 0000 12356888999999999987664 489999997644
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.4e-08 Score=87.94 Aligned_cols=198 Identities=13% Similarity=0.187 Sum_probs=129.2
Q ss_pred ccCccEEEEEEeCCCC-cEEEE-----EcCCCcEEEEeCcCCee--eEEEecccCCceeEEEEeeCCCCeEEEEeC----
Q 013086 71 YHSRRVTCLEFHPTNN-HILLS-----GDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASS---- 138 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~-~~l~t-----~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---- 138 (449)
-|...|+.+.+||.+. ..+|+ ++.-+.|+||....... ...........=-.+.|++.+..+|+.++.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 3577899999999742 33443 34456899998863211 111111123334567788774445544432
Q ss_pred -------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE--EcCCCeEEEEECCCCCCccceEE
Q 013086 139 -------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV--ADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 139 -------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
..++++.+++.... .+.+... .+|.++.|+++++-+++ |..-..+.++|++..- .
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~--~V~L~k~--------GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v 306 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESV--SVPLLKE--------GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------V 306 (566)
T ss_pred CCccccccceEEEEEecCceE--EEecCCC--------CCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------e
Confidence 24688888773332 2333222 24999999999986665 5677899999998632 1
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC------C
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ------D 280 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d 280 (449)
..-..++-+++-|+| .+++|+.++. .|.|-+||+.+.+.... + ....-+-+.|+|||.+|+|+.. |
T Consensus 307 ~df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~---~-~a~~tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 307 FDFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAK---F-KAANTTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred EeCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccc---c-ccCCceEEEEcCCCcEEEEEeccccEEec
Confidence 222334788999999 8998888775 57999999987444222 2 2233456899999999999875 7
Q ss_pred CcEEEEeCC
Q 013086 281 NRLRIWDSI 289 (449)
Q Consensus 281 g~i~vwd~~ 289 (449)
+.++||+..
T Consensus 382 Ng~Kiwhyt 390 (566)
T KOG2315|consen 382 NGIKIWHYT 390 (566)
T ss_pred CCeEEEEec
Confidence 899999985
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=2.8e-07 Score=75.73 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=139.1
Q ss_pred EEEeeCCCCeEEEEeCCCeEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC
Q 013086 123 IRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART 200 (449)
Q Consensus 123 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 200 (449)
++.+.+ |++||.. .|..|.|=..++. ..+.....+..+. ..-..++|+||+.+||.+...|+|+++|+..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 344555 6666554 4667777655443 2223333333322 1267899999999999999999999999875
Q ss_pred CCCccceE---EeecCCCceEEEEEcCCC-----CCEEEEEeCCCeEEEEEccCC--CCCCc---eeec-CCCCcEEEEE
Q 013086 201 NSRSGEAI---LIHRKGSKVVGLHCNPIQ-----PELLLSCGNDHFARIWDIRRL--EAGSS---LCDL-PHKRVVNSAY 266 (449)
Q Consensus 201 ~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~--~~~~~---~~~~-~~~~~v~~~~ 266 (449)
........ ........|..+.|.+.. ...|++-..+|.++-|-+..+ +..+. +... .+...|.++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 33211000 001112356667676522 235666677888888776321 22222 2211 3467899999
Q ss_pred EcCCCCEEEEeeCCC-----------cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecc
Q 013086 267 FSPSGSKILTTSQDN-----------RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 335 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 335 (449)
++|..++|++|+... -+..|.+-.+..- +....+- +.-
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py------------------yk~v~~~----------~~~--- 203 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY------------------YKQVTSS----------EDD--- 203 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc------------------EEEcccc----------Ccc---
Confidence 999989888877532 1333333221110 0000000 000
Q ss_pred cCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE
Q 013086 336 NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 336 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
......+..+|.+.+.+... ........+..+ ..||||.+||+.. +|.|.+|++.+.++.+....+.+.
T Consensus 204 --~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~km-SlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 204 --ITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKM-SLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred --ccccccccceeeccceeeee-ccccCCCceEEE-EECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 00011122344444333222 223344677777 8999999999999 999999999999888777665554
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=9.8e-10 Score=100.55 Aligned_cols=185 Identities=17% Similarity=0.190 Sum_probs=129.0
Q ss_pred cEEEEEEeCCC--CcEEEEEcCCCcEEEEeCcC--CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 75 RVTCLEFHPTN--NHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 75 ~V~~~~~~~~~--~~~l~t~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
.|-.+.|+|.- +..+++.+ ...-.+|++.. ...+.....+|+..|+.+.|+|.....+++++.|-.+..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 35567777642 34455444 45566898864 334555558899999999999998889999999999999999875
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
........... .....++|+-....+++.+....|.+||++.+..+...... +-..++.++|+......+
T Consensus 148 ~~p~ys~~~w~--------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 148 HRPFYSTSSWR--------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred Ccceeeeeccc--------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhh
Confidence 43222111100 12567888887777888888889999999998766443333 444788888887666789
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
.+.+.||+|+.||........ -.......+|..-.+.|-|
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~-~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTES-KRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cccCCCCceeeeccccccccc-ceeccccCcceeccccccC
Confidence 999999999999986533321 1122355667777777733
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=7.5e-07 Score=89.35 Aligned_cols=214 Identities=13% Similarity=0.112 Sum_probs=142.9
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcC---C---CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC--
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDK---K---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-- 138 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~---d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-- 138 (449)
..+. +.+.-..|+|-.|| .++|+.+. . +.++||+-+ +...... ..-.+--.+++|.|. |+++++...
T Consensus 204 ~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs-G~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS-GNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC-CCEEEEEEEcC
Confidence 3455 66677789999999 68887764 2 579999976 3322222 233444567899999 998888765
Q ss_pred -CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 139 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 139 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
...|.+|. ++|.....+...... ....+..+.|++++..|++...+. |.+|-..+.....+..........+
T Consensus 279 ~~~~VvFfE-rNGLrhgeF~l~~~~-----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 279 DRHDVVFFE-RNGLRHGEFTLRFDP-----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred CCcEEEEEe-cCCcEeeeEecCCCC-----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 34566676 445555556554311 112389999999999999987655 9999988765433322222333345
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcc----CCCC---------------------------CC--ceeecCCCCcEEE
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIR----RLEA---------------------------GS--SLCDLPHKRVVNS 264 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~---------------------------~~--~~~~~~~~~~v~~ 264 (449)
..+.|+|.+...|...+.+|.+..++.. .... .. ....+....+|..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 6699999878878888776776655432 1100 00 1111235678999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
++|++++..+++-..||.|.+|......
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 9999998889999999999999976543
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=7e-09 Score=88.47 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=108.8
Q ss_pred eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce----eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 120 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
+..+..++. +.+|+.+..+....+++...... .....++. ...++.+..+.....++..-|.++-
T Consensus 65 ~~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----------~~~ai~~~~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 65 PALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----------RPTAISFIREDTSVLVADKAGDVYS 133 (390)
T ss_pred ccccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----------CcceeeeeeccceEEEEeecCCcee
Confidence 344455666 78888887777766777654432 22222221 2456666666777777666665555
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
+|+-.... ......-.|-+-++.++|+| ++++|+++..|..|++-.....-.+..+ .++|..-|..++.-++. .|+
T Consensus 134 ~di~s~~~-~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~~-~Ll 209 (390)
T KOG3914|consen 134 FDILSADS-GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDNY-LLL 209 (390)
T ss_pred eeeecccc-cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccCc-eee
Confidence 55443211 11112334444799999999 9999999999999999887654433333 24899999999998654 589
Q ss_pred EeeCCCcEEEEeCCCCCCCC
Q 013086 276 TTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~ 295 (449)
++|.|++|++||+.+|+.+.
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ecCCCCcEEEEecccCCccc
Confidence 99999999999999998853
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.8e-07 Score=75.80 Aligned_cols=267 Identities=13% Similarity=0.043 Sum_probs=152.7
Q ss_pred CCcEEEEeCcCCee-eEEEecccCCceeEEEEeeC----CCCeEEEEeCCCeEEEEeCCCCceeeee-ecCCCCCCCCCc
Q 013086 95 KGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPT----NDGTVYAASSDGTVSCTDLETGLALSLM-NVNPNGWHGPRT 168 (449)
Q Consensus 95 d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~ 168 (449)
...+-+|++.+... +..+. ..+.|.|. ...+|+.|+..|...+|...+.+....+ ..+..+..-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~--- 120 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL--- 120 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh---
Confidence 34566676655431 11221 33445442 1567899999999999999876543322 111111100
Q ss_pred ccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC
Q 013086 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 248 (449)
+...+ ....-+..++.|.+++++++..+.... ..|...-.+.++++++ ++.++++.+....|..|.+....
T Consensus 121 ---~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 121 ---VKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred ---hhhhc--ccccceeeccCCcceeEEEEecCcccc---eeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc
Confidence 01111 112345666777777777766544322 2233323588999999 99999999999999999987643
Q ss_pred CCCce-eecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccce-eeeeccCCCCCce
Q 013086 249 AGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESL 326 (449)
Q Consensus 249 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 326 (449)
....- ........-.+..|+.....+|++..||++.|||++...... ....... ..+...+ .+.|+|..+-..+
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm--~~~sstr--p~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM--AEISSTR--PHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch--hhhcccC--CCCCCceEEEEecCCCcceEE
Confidence 32211 122344455678999999999999999999999998654321 1111111 1122222 4678876443333
Q ss_pred EEEcceecccCCCCCCcceEEEECCCceEEEEEecCc-------cceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 327 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN-------ITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
..+. .-+.+.+.|+++++..+.+.-.. ...+..- .|+.++..+.+.+.-.+.=|++.+
T Consensus 268 f~sE----------hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt-~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 268 FISE----------HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT-NFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EEec----------CcceEEEEEcccCceeeEEecCccccccccccccccc-cccCCCcccccccchhhheeeccc
Confidence 3322 33568899999988766654322 1113322 366666555555533444455443
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.9e-08 Score=83.44 Aligned_cols=272 Identities=14% Similarity=0.109 Sum_probs=154.5
Q ss_pred EEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE
Q 013086 98 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 177 (449)
Q Consensus 98 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 177 (449)
+++.+..+.+... +..+|...|.+++|+|.+..++..++.+..|.|.|+++......+..+. .+++++|
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----------~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----------QIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----------Cceeeee
Confidence 4444444433333 4467888999999999955589999999999999999988887776553 2889999
Q ss_pred ecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC-----CCCEEEEEeCCCeEEEEEccCCCC-C
Q 013086 178 NPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-----QPELLLSCGNDHFARIWDIRRLEA-G 250 (449)
Q Consensus 178 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~-~ 250 (449)
.-+. .+|.+|..+|.|.+||++........+.......+|..++..+. .+.+++....+ +..|++..... .
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence 8865 57778889999999999987655433333222235555544431 23444444432 55676643221 1
Q ss_pred CceeecCCCCcEEEEEEcCCCCEEEEeeCC-C---cEEE----EeCCCCCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N---RLRI----WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g---~i~v----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
......+..+...++..++..+.++....- . .++. -|-.+|..+...+.... .........-...+.+.+.
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCcccccccccceeccccc
Confidence 122223445666777777744554443321 0 0110 11111111110000000 0000000001122222221
Q ss_pred CCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC-CcEEeecCCCeEEEEcCCC
Q 013086 323 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-DDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~l~s~sdg~i~iw~~~~ 395 (449)
.++. ..|.+.+++.+||..+++.++++... ..+..+.-+.-+ +.+|++-.|..++|+..++
T Consensus 401 --------n~iv--~~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 401 --------NYIV--VVGDSTNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred --------cEEE--EecCCcceeEEeccchhheeeecccC--cceeecceeecCCcchhhheecceEEEEecCC
Confidence 1221 14667789999999999999998765 455544223333 4577777788999987653
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=3e-07 Score=80.48 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=131.8
Q ss_pred eCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec----------ccCCceeEEE-EeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 82 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----------IHSCIVNNIR-FNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 82 ~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~----------~h~~~v~~~~-~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
+.||.+++++. .|.|.+||..+......-.. ....+..-+. |++.++++++..|. |...+.+.-.+
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 44675555543 57899999887543322110 0111222232 55555888888885 66777766555
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
-.+..- .. ..|.-..+..+++-++.|..|| .+-++|..++... .....-+.|.++..+| ++.+
T Consensus 352 ~~iqv~---~~--------~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k----r~e~~lg~I~av~vs~-dGK~ 415 (668)
T COG4946 352 YSIQVG---KK--------GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK----RIEKDLGNIEAVKVSP-DGKK 415 (668)
T ss_pred eeEEcC---CC--------CceEEEEEccCCcceEEeccCCceEEEEecCCceEE----EeeCCccceEEEEEcC-CCcE
Confidence 443221 11 1267777777888899999999 8999999987633 3344445799999999 9999
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC----cEEEEeCCCCCC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN----RLRIWDSIFGNL 293 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~ 293 (449)
++++.....|.+.|+.++... +......+-|+.+.|||+++++|-+--+| .|+++|+..++.
T Consensus 416 ~vvaNdr~el~vididngnv~--~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR--LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCceEEEEEEecCCCee--EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999999999999999876552 22224667899999999999999876554 678888876654
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4e-07 Score=83.68 Aligned_cols=191 Identities=9% Similarity=0.087 Sum_probs=117.9
Q ss_pred cEEEEEEeCCCCcEEEEEcC---CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCC--CeEEEEeCC
Q 013086 75 RVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSD--GTVSCTDLE 148 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d--g~v~iwd~~ 148 (449)
.+....|+|+|+++++..+. +..|.++|+.+++...... ..+......|+|+ ++.+ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKD-GSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCC-CCEEEEEEccCCCcEEEEEECC
Confidence 67789999999653443332 3568899998876655442 4555667889999 6554 444444 467888887
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++.... +..... ......|+|||+.|+..+. .+ .|+++|+.++..... .. .+.. ...|+|
T Consensus 266 ~g~~~~-LT~~~~---------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t~--~g~~--~~~~SP- 328 (419)
T PRK04043 266 TKTLTQ-ITNYPG---------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--VF--HGKN--NSSVST- 328 (419)
T ss_pred CCcEEE-cccCCC---------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--cc--CCCc--CceECC-
Confidence 776433 221111 0234479999997777653 33 788888887654221 11 1111 248999
Q ss_pred CCCEEEEEeCC---------CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCC
Q 013086 226 QPELLLSCGND---------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSI 289 (449)
Q Consensus 226 ~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~ 289 (449)
+++.|+..... ..|.+.|+.++.. ..+. .........|+|||+.|+..+.+ + .|.+.++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT---ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC---CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 88877776643 3688888876433 1221 12233358899999988776643 2 35555654
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=6.1e-09 Score=83.63 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=101.4
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCCCCeEEEEe-----CCC
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAAS-----SDG 140 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~-----~dg 140 (449)
+++..|+++=.+-+.+-.+ .-++++..||.+.+.+.+......... ..|.+. .+.+.... ++.+.++. .-+
T Consensus 83 ~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~-~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRH-GNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeec-ccEEecCCcceEeecc
Confidence 4455555544443444344 348999999999999987622111111 112211 11122222 33444332 123
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
..+.|+++..+...... .....+.+++-+|.. ..+++|+.+|.+-+||.+....+..++..|. .++..
T Consensus 160 ~~~a~~~~p~~t~~~~~---------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk--~~i~e 228 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSK---------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHK--AEIWE 228 (319)
T ss_pred ceeeecccccccccccc---------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhh--hhhhh
Confidence 45556554332221111 111238888888865 5677789999999999999866555444444 48999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
+-|+|.++..|+++++||.+.-||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999999863
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.5e-08 Score=86.59 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=100.4
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 251 (449)
......++.+++++++..+....+++........++.....-....+++.+.. +......+..-|.++-+|+-......
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccC
Confidence 34455677888999998888887888776554222222222222344444444 33334444334444444443322244
Q ss_pred ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEE-c
Q 013086 252 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI-G 330 (449)
Q Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 330 (449)
....++|-+.++.++|+||+++++++..|..|++-....--.+ .. .++-.......+.+. +
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-------es-----------fclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-------ES-----------FCLGHKEFVSTISLTDN 205 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-------hh-----------hccccHhheeeeeeccC
Confidence 4555689999999999999999999999999999776422111 00 011011111112221 2
Q ss_pred ceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 331 RYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 331 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
..+. +|+.|++|++||+.+|+.+.++.
T Consensus 206 ~~Ll---S~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 YLLL---SGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ceee---ecCCCCcEEEEecccCCcccccc
Confidence 2333 79999999999999999887664
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.97 E-value=4.8e-07 Score=77.35 Aligned_cols=225 Identities=19% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEE--EeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccce
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIR--FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
+|.|..||..+++.+....... ...... ..++ +..+++++.++.|..||..+|+.+..+......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~---------- 68 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP--GIGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI---------- 68 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS--SCSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCG----------
T ss_pred CCEEEEEECCCCCEEEEEECCC--CCCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccc----------
Confidence 6889999999998888774211 122222 2223 678888889999999999999999888763321
Q ss_pred eEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC-CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 013086 173 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 251 (449)
... ....+..+++++.++.++.+|..+++............ .......... .+..++++..++.|..+|+++++...
T Consensus 69 ~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 69 SGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp GSG-EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cce-eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEE
Confidence 111 13346667777788899999999988765422221111 1122222322 46778888889999999998866533
Q ss_pred ceeecCCC--Cc------EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCC
Q 013086 252 SLCDLPHK--RV------VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 323 (449)
Q Consensus 252 ~~~~~~~~--~~------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (449)
........ .. +..-....++ .++.++.++.+..+|+.+++..- ....... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-------~~~~~~~----~--------- 205 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-------SKPISGI----Y--------- 205 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-------EECSS-E----C---------
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-------EecCCCc----c---------
Confidence 33221111 11 1222222244 67777777754444998876310 0000000 0
Q ss_pred CceEEEcceecccCCCCCCcceEEEECCCceEEEE
Q 013086 324 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 358 (449)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 358 (449)
......+..+. .++.++.|..||+.+|+.+.+
T Consensus 206 ~~~~~~~~~l~---~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 206 SLPSVDGGTLY---VTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ECEECCCTEEE---EEETTTEEEEEETTTTEEEEE
T ss_pred CCceeeCCEEE---EEeCCCEEEEEECCCCCEEeE
Confidence 00111233333 344789999999999998764
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=5.8e-07 Score=82.89 Aligned_cols=272 Identities=15% Similarity=0.077 Sum_probs=156.3
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC---------ce-eEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---------~v-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.+++++.++.+.-+|..+++........... .+ ..+.. . +..++.++.+|.+..+|.++|+.+....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 4666677888999999888877665321110 00 11122 2 5577888889999999999999888776
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC-C-CceEEEEEcCCCCCEEEEEeC
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK-G-SKVVGLHCNPIQPELLLSCGN 235 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~ 235 (449)
..... ...... .+..+++++.++.+..+|..+++........... . ....+-.. .+..++.++.
T Consensus 148 ~~~~~---------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~ 213 (394)
T PRK11138 148 VAGEA---------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGD 213 (394)
T ss_pred CCCce---------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcC
Confidence 53221 011111 2456777888999999999998765433111000 0 00001111 1235667778
Q ss_pred CCeEEEEEccCCCCCCceeecCCC--C---cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 236 DHFARIWDIRRLEAGSSLCDLPHK--R---VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~--~---~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
+|.+..+|..+++..-........ . ....+.-+| .+..+++++.+|.+..+|+.+|+..-.. ....
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-------~~~~ 286 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-------EYGS 286 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-------cCCC
Confidence 899999998876553322111000 0 011111223 3556777788999999999988642110 0000
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCe
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 387 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~ 387 (449)
.......+..+. .++.++.+..+|..+|+.+.............. .. .+..|+.++ ||.
T Consensus 287 --------------~~~~~~~~~~vy---~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp-~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 287 --------------VNDFAVDGGRIY---LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP-VL--YNGYLVVGDSEGY 346 (394)
T ss_pred --------------ccCcEEECCEEE---EEcCCCeEEEEECCCCcEEEcccccCCCcccCC-EE--ECCEEEEEeCCCE
Confidence 001122233332 356788999999999988765432111111111 11 244566666 999
Q ss_pred EEEEcCCCchhhhhhh
Q 013086 388 IFIWRPKEKSELVEQK 403 (449)
Q Consensus 388 i~iw~~~~~~~~~~~~ 403 (449)
|.+.|..+|+.+.+.+
T Consensus 347 l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 347 LHWINREDGRFVAQQK 362 (394)
T ss_pred EEEEECCCCCEEEEEE
Confidence 9999999998776654
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=2.7e-06 Score=78.22 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=105.7
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCe-EEEEeC---CCeEEEEeCCCCceeeeeecCCCCCCCCCcccce
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT-VYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
.|.+-|.......... . . .......|+|+ ++. ++..+. +..|.++|+.+++........ . ..
T Consensus 170 ~l~~~d~dg~~~~~~~-~-~-~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g---------~~ 235 (419)
T PRK04043 170 NIVLADYTLTYQKVIV-K-G-GLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-G---------ML 235 (419)
T ss_pred eEEEECCCCCceeEEc-c-C-CCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-C---------cE
Confidence 4555555544333222 2 2 37788999999 653 554333 356999999888765544321 1 14
Q ss_pred eEEEEecCCCEEEEE-c--CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccC
Q 013086 173 YGMDINPEKGVVLVA-D--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRR 246 (449)
Q Consensus 173 ~~~~~~~~~~~l~~~-~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~ 246 (449)
....|+|||+.++.. + .+..|+++|+.++... .............|+| +++.|+..+. .+ .|+++|+.+
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 567799999877654 3 3357888898776432 2222222234568999 8887776654 23 678888875
Q ss_pred CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCCCC
Q 013086 247 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---------NRLRIWDSIFGNL 293 (449)
Q Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~ 293 (449)
++..+.. ..+. ....|+|+|++|+..+.. ..|.+.|+.++..
T Consensus 311 g~~~rlt-~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 311 GSVEQVV-FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCeEeCc-cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 4442222 1111 124899999998877653 3688888877754
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.92 E-value=1e-06 Score=72.47 Aligned_cols=194 Identities=12% Similarity=0.100 Sum_probs=111.7
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc------cCCceeEEEEeeCC-----CCeEEEEeCCCeEEE
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTN-----DGTVYAASSDGTVSC 144 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~-----~~~l~s~~~dg~v~i 144 (449)
=.-++||||+ .+||.+...|+|+++|+...... .+... -...|..|.|.+.. ...|++-..+|.++-
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4569999999 79999999999999999864332 22222 23567777776542 225667777888887
Q ss_pred EeCCCC-----ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 145 TDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 145 wd~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
|-+..+ +....+.+.... ...|.++.++|..++|++|+.... ..+.. . ....-+++
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~y------p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s-----~--a~~~GLta 184 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHY------PHGINSAVYHPKHRLLLVGGCEQN------QDGMS-----K--ASSCGLTA 184 (282)
T ss_pred EEEEcccCCcceeeEEEEecccC------CCceeEEEEcCCCCEEEEeccCCC------CCccc-----c--ccccCceE
Confidence 776332 233333332221 123999999999999888865322 00000 0 00001222
Q ss_pred EEEcCCCCCEEE-EEeCCCe------EEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 220 LHCNPIQPELLL-SCGNDHF------ARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 220 ~~~~~~~~~~l~-~~~~dg~------i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
-.+....+.+.. +...|+. ..+|.+-+ ...+.. ......|..|..||||..|++...+|.|.+|++..-
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 221111111111 1111111 12232221 111111 135678999999999999999999999999999765
Q ss_pred CC
Q 013086 292 NL 293 (449)
Q Consensus 292 ~~ 293 (449)
++
T Consensus 262 ~~ 263 (282)
T PF15492_consen 262 RL 263 (282)
T ss_pred hh
Confidence 44
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.3e-08 Score=91.57 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=142.3
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE-EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
++|.||++.|.-+.|+.+. +-|-|...+|.|.||-+-++..... +.......|.+++|+.+ |..++....||.|.+=
T Consensus 65 QtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEE
Confidence 6899999999999999988 4588889999999999887653322 22345678999999999 9999999999999887
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc---ce-E----EeecCCCce
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG---EA-I----LIHRKGSKV 217 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-~----~~~~~~~~v 217 (449)
.++..+ +.--.+... ....+.|++|.+.++.+-.+|.+.+||....-... .. . .....+..+
T Consensus 143 svdGNR-IwgKeLkg~---------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 143 SVDGNR-IWGKELKGQ---------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred eeccce-ecchhcchh---------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccc
Confidence 776433 221111111 15678899999999999999999999986542211 00 0 111222346
Q ss_pred EEEEEcC-------CCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 218 VGLHCNP-------IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 218 ~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
..+.|.. .+...|+++...|.+.|..-.+.... .+. ...-.|..+.|+++|..|++++.+
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-vv~--dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-VVV--DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-eEE--ecccEeecceecCCCcEEEEccCc
Confidence 6677652 15568999999999998765543332 222 234678899999999999999865
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.9e-09 Score=100.77 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=110.3
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC--
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-- 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-- 191 (449)
..|....+|++|+-+ .++|+.|+..|.|+++++.+|.....+..+... ++.+.-+.+|..+++.+...
T Consensus 1098 rd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa---------vT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA---------VTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccc---------cccccccCCcceeeeeccccCc
Confidence 457888999999998 999999999999999999999887777665543 77788888888777765433
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSP 269 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~ 269 (449)
...+|++.+..... |... .-.++.|+. ....-+.|.......+||+.+......+..- +....-++..|+|
T Consensus 1168 lsaLW~~~s~~~~~-----Hsf~-ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPR-----HSFD-EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred hHHHhccccccCcc-----cccc-ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 56789987632211 1111 356788886 4555556666677899999886553332111 2233347789999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCC
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
+..+++ .|| .+||++..+
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred CcceEe---eCc--eeeeeccHH
Confidence 988776 455 469997654
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=7.6e-09 Score=59.95 Aligned_cols=38 Identities=29% Similarity=0.608 Sum_probs=35.3
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEe
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 102 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd 102 (449)
.++.++.+|.+.|++|+|+|++ .+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4578999999999999999998 6899999999999997
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.4e-06 Score=77.87 Aligned_cols=226 Identities=16% Similarity=0.295 Sum_probs=134.2
Q ss_pred cEEEEEEeCCCCcEEEEEcC-----------CCcEEEEeCcCCeeeEEEec--ccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 75 RVTCLEFHPTNNHILLSGDK-----------KGQVGVWDFYKVSEKIVYGN--IHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~-----------d~~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
.|.-+.|||.. +||+|-+. ...++|||+.++.....+.. .....-.-..||.+ +.++|--.. .+
T Consensus 251 ~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc-ce
Confidence 47889999998 78988753 25799999999988777642 22222344679998 888877665 57
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEE-------------------
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVD------------------- 197 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d------------------- 197 (449)
|.||+..+-..+..-.+... .|....|+|.+++||.-... ..+.+..
T Consensus 328 isIyEtpsf~lld~Kslki~---------gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck 398 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKIS---------GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK 398 (698)
T ss_pred EEEEecCceeeecccccCCc---------cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE
Confidence 99998776333222222111 25666666666655543211 1122221
Q ss_pred ---------------------------------CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEE
Q 013086 198 ---------------------------------ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARI 241 (449)
Q Consensus 198 ---------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i 241 (449)
++......... .....|...+|-| .|+.+++-+. ..++.+
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v---elke~vi~FaWEP-~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV---ELKESVIAFAWEP-HGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee---ecchheeeeeecc-CCCeEEEEEccccccceeE
Confidence 11111111111 1122577889999 7766655443 357889
Q ss_pred EEccC-CCCCCceeecCCCCcEEEEEEcCCCCEEEEee---CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeee
Q 013086 242 WDIRR-LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS---QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 317 (449)
Q Consensus 242 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (449)
|.+.+ ......+..+ .....+.+.|+|.|++++++. ..|.+.++|+....+.. .....|.....+.|
T Consensus 475 Y~~e~~~~~~~lVk~~-dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~--------~~~~eh~~at~veW 545 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKEL-DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD--------TASPEHFAATEVEW 545 (698)
T ss_pred EEeecCCCchhhhhhh-cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh--------ccCccccccccceE
Confidence 98874 2222333333 235567899999999988764 47899999986422211 11122222336889
Q ss_pred ccCCCCCceEEEcceec
Q 013086 318 DPKDPSESLAVIGRYIS 334 (449)
Q Consensus 318 ~~~~~~~~~~~~g~~~~ 334 (449)
+|. |+|+.
T Consensus 546 DPt---------GRYvv 553 (698)
T KOG2314|consen 546 DPT---------GRYVV 553 (698)
T ss_pred CCC---------CCEEE
Confidence 998 88887
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.7e-08 Score=92.64 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=138.3
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
..+.||..+|+.+.|+|..+.++++++.|..+..||+.+.....-....-......++|+.. ...+.+.+....|.+||
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-CcchhhhccCCceEEEe
Confidence 57889999999999999998899999999999999999876554443445566788999987 44555566677899999
Q ss_pred CCCCce-eeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 147 LETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 147 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
++.|.. +..++.+. ..+..++|.. ....+++.+.||+|++||........... .....+|.--.+.|
T Consensus 187 ~r~gs~pl~s~K~~v---------s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~--vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHV---------SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT--VTTNFPIWRGRYLP 255 (1081)
T ss_pred ccCCCcceEEecccc---------eeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee--ccccCcceeccccc
Confidence 987643 33333221 1266666654 24568889999999999987644332221 12233566666666
Q ss_pred CCCCEEEEEeCC-CeEEEEEccCCC-------CCCceee-cCCCCcEEEEEEcCCC----------CEEEEeeCCCcEEE
Q 013086 225 IQPELLLSCGND-HFARIWDIRRLE-------AGSSLCD-LPHKRVVNSAYFSPSG----------SKILTTSQDNRLRI 285 (449)
Q Consensus 225 ~~~~~l~~~~~d-g~i~iwd~~~~~-------~~~~~~~-~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~v 285 (449)
....+++.-... ..+.+++-++.. ....+.. .+|...|....|-..+ -.|++=+.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 333333222221 133333332211 1122333 3788888766664322 26899999999999
Q ss_pred EeCCC
Q 013086 286 WDSIF 290 (449)
Q Consensus 286 wd~~~ 290 (449)
|-+..
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 98854
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=5.5e-06 Score=76.43 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=150.2
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeE-EEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN-IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
.++.++.++.+.-+|..+++....... . ..+.+ .... +..++.+..++.|..+|..+|+.+.............
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~-~-~~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKV-A-GEALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccC-C-CceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 355677789999999999888776632 2 22222 1222 4567778889999999999999988776532110000
Q ss_pred CcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC-Cc---eEEEEEcC-CCCCEEEEEeCCCeEEE
Q 013086 167 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SK---VVGLHCNP-IQPELLLSCGNDHFARI 241 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~~~~~dg~i~i 241 (449)
. ..+-.. .+..+++++.+|.+..+|..+++............ .. ...+..+| ..+..++.++.+|.+..
T Consensus 197 ~----~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 197 G----ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred C----CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 0 000011 13457778889999999998887654321111100 00 11111122 02356667778999999
Q ss_pred EEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCC
Q 013086 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 321 (449)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (449)
+|..+++..-.. ... ....+.. .+..|+.++.+|.+..+|..+|+..-.... .... .+
T Consensus 271 ld~~tG~~~W~~---~~~-~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~~~~------~~---- 328 (394)
T PRK11138 271 LDLRSGQIVWKR---EYG-SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD------LLHR------LL---- 328 (394)
T ss_pred EECCCCCEEEee---cCC-CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc------cCCC------cc----
Confidence 999876542211 111 1111222 466788888899999999988864211000 0000 00
Q ss_pred CCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 322 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
...+.. +.++. .+..+|.|...|..+|+.+.+............ .+ .++ .|+.++ ||.|+.+++
T Consensus 329 -~sp~v~-~g~l~---v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P-~~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 -TAPVLY-NGYLV---VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP-VV-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred -cCCEEE-CCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC-EE-ECC-EEEEEeCCceEEEEeC
Confidence 011112 33333 467889999999999999888764321111111 12 234 555556 999988764
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=84.59 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=108.6
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc-ceEEeec
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHR 212 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~ 212 (449)
++.+.+..|-+-|+++|-..... ....|.++.|...++++..|+.+|.|..+|++....-. ......-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-----------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-----------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred ecccccceeEEEEeecccccccc-----------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 45555677888888877543222 11238889999999999999999999999999762211 1112334
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEE--EEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNS--AYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~--~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
|++.|+++.....++++|++.+.+|.|.+||.+..+....+... +|-..-.- +...+....+++++.|...+||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 55589998877767889999999999999999987765545443 44332222 3345566788889999999999999
Q ss_pred CCCCCC
Q 013086 290 FGNLDS 295 (449)
Q Consensus 290 ~~~~~~ 295 (449)
.|.++.
T Consensus 377 ~ghLl~ 382 (425)
T KOG2695|consen 377 SGHLLC 382 (425)
T ss_pred cCceee
Confidence 988754
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=6.5e-08 Score=79.89 Aligned_cols=235 Identities=16% Similarity=0.255 Sum_probs=141.7
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce-----eeeeecCCCCC---CCCCcccceeEEEEecCC--CEEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGW---HGPRTWRMLYGMDINPEK--GVVL 185 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~--~~l~ 185 (449)
....|+++.|... |.+|++|...|.|.+|.-+.... ...++.+...+ ........|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4567999999998 99999999999999997654331 11122221111 111122347777777654 4788
Q ss_pred EEcCCCeEEEEECCCCCCc----------------------cce-----------E-------EeecCCCceEEEEEcCC
Q 013086 186 VADNFGFLYLVDARTNSRS----------------------GEA-----------I-------LIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 186 ~~~~dg~i~i~d~~~~~~~----------------------~~~-----------~-------~~~~~~~~v~~~~~~~~ 225 (449)
..+.|.+|++|.+...... .++ + ....|.--++++.++.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 8899999999987643100 000 0 0112333477888887
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeec-CC-----CCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH-----KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+.+.++++ .|-.|.+|++.-......+... +| ..-|++..|+| ....+...+..|.|++-|++...+.-
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd--- 258 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD--- 258 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc---
Confidence 77777776 4778999998754332222222 22 24688899999 55677777889999999997433210
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC-CceEEEEEecCccceeceeeecCCCC
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
++. +++... .+--+ .+...-...+..+ .|+++|
T Consensus 259 -------------------n~~-------------------------klfe~~~D~v~~-~ff~eivsSISD~-kFs~ng 292 (460)
T COG5170 259 -------------------NSK-------------------------KLFELTIDGVDV-DFFEEIVSSISDF-KFSDNG 292 (460)
T ss_pred -------------------Cch-------------------------hhhhhccCcccc-hhHHHHhhhhcce-EEcCCC
Confidence 000 000000 00000 1111112456666 899999
Q ss_pred cEEeecCCCeEEEEcCCCch-hhhhh
Q 013086 378 DVLASGSSRSIFIWRPKEKS-ELVEQ 402 (449)
Q Consensus 378 ~~l~s~sdg~i~iw~~~~~~-~~~~~ 402 (449)
+++++-+--+|+|||+...+ ++.+.
T Consensus 293 ryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 293 RYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred cEEEEeccceEEEEecccccCCceee
Confidence 99998887899999987653 44433
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=84.75 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=104.6
Q ss_pred EEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc-----eeeeeecCCCCCC
Q 013086 90 LSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-----ALSLMNVNPNGWH 164 (449)
Q Consensus 90 ~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~ 164 (449)
++.+.+-.|-+-|++++...... ..+.|.++.|... +++++.|..+|.|...|++.+. +...+- +
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h----- 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H----- 297 (425)
T ss_pred ecccccceeEEEEeecccccccc---cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEEE-c-----
Confidence 44455678888898887654433 5678999999988 8999999999999999998751 122221 1
Q ss_pred CCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecC--CCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 165 GPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK--GSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 165 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
...|+++..-. ++.+|++.+.+|.|.+||++.-+....+.....| .....-+.+.+ ....+++++.|...+|
T Consensus 298 ----~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 298 ----DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRI 372 (425)
T ss_pred ----CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEE
Confidence 12377777666 7889999999999999999987664333333333 22333344555 6678888999999999
Q ss_pred EEccCCCC
Q 013086 242 WDIRRLEA 249 (449)
Q Consensus 242 wd~~~~~~ 249 (449)
|.++.+..
T Consensus 373 Wsl~~ghL 380 (425)
T KOG2695|consen 373 WSLDSGHL 380 (425)
T ss_pred EecccCce
Confidence 99986444
No 305
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.79 E-value=2.8e-06 Score=75.27 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=121.7
Q ss_pred EEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe
Q 013086 99 GVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN 178 (449)
Q Consensus 99 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 178 (449)
.+|+..+......+ ..-.-++..+.|+|. |.+|++.... .|.+|.-.....+..+..+ .|..+.|+
T Consensus 15 ~f~~~~s~~~~~~~-~~~~~p~~~~~~SP~-G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~-----------~V~~~~fS 80 (561)
T COG5354 15 VFWNSQSEVIHTRF-ESENWPVAYVSESPL-GTYLFSEHAA-GVECWGGPSKAKLVRFRHP-----------DVKYLDFS 80 (561)
T ss_pred EeecCccccccccc-cccCcchhheeecCc-chheehhhcc-ceEEccccchhheeeeecC-----------CceecccC
Confidence 34555554444444 336678999999999 9888887765 4899998877655555432 28899999
Q ss_pred cCCCEEEEEcCCC---------------eEEEEECCCCCCccceEEeecCCCceE-EEEEcCCCCCEEEEEeCCCeEEEE
Q 013086 179 PEKGVVLVADNFG---------------FLYLVDARTNSRSGEAILIHRKGSKVV-GLHCNPIQPELLLSCGNDHFARIW 242 (449)
Q Consensus 179 ~~~~~l~~~~~dg---------------~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iw 242 (449)
|.+++|.+-...+ .+.+||+.++..+.......... -.. -+.|+- +..+++-. ....++|+
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~-~D~y~ARv-v~~sl~i~ 157 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSI-DDKYVARV-VGSSLYIH 157 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeee-cchhhhhh-ccCeEEEE
Confidence 9999999865433 48999999987553221111110 122 466666 55555444 34579999
Q ss_pred EccCCCCCCceeecCCCCcEEEEEEcCC--CCEEEE-----eeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceee
Q 013086 243 DIRRLEAGSSLCDLPHKRVVNSAYFSPS--GSKILT-----TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRA 315 (449)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (449)
++...-....+..+ ....|....|+|. +..|+. .+.++.+++|.+..+..+ ....+- .+..+.+
T Consensus 158 e~t~n~~~~p~~~l-r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-------~tk~lf-k~~~~qL 228 (561)
T COG5354 158 EITDNIEEHPFKNL-RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-------VTKNLF-KVSGVQL 228 (561)
T ss_pred ecCCccccCchhhc-cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-------eeeeeE-eecccEE
Confidence 97221111112111 2356888889995 344443 355788999998644332 122111 1122467
Q ss_pred eeccCCCCCceEE
Q 013086 316 EWDPKDPSESLAV 328 (449)
Q Consensus 316 ~~~~~~~~~~~~~ 328 (449)
.|++......+.+
T Consensus 229 kW~~~g~~ll~l~ 241 (561)
T COG5354 229 KWQVLGKYLLVLV 241 (561)
T ss_pred EEecCCceEEEEE
Confidence 7887744433333
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.79 E-value=9.7e-07 Score=75.47 Aligned_cols=230 Identities=19% Similarity=0.133 Sum_probs=129.8
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
+|+|..||..+|+.+......... ....+. ..+++..+++++.++.++.||..+++....... .. .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~-------~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~---~~~ 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI-------GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG---PIS 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC-------SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS---CGG
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-------CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc---ccc
Confidence 689999999999999888663210 002211 334677788889999999999999876543211 11 111
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC--CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
..... .+..+++++.++.|+.+|..+++......... .............+..++++..++.|..+|+.+|+.+-.
T Consensus 70 ~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 70 GAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp SGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ceeee--cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 11111 44566777788899999988866644321111 111112222333478888888899999999999876321
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEE-cceecccCCCCCCcc-eEEEECCCceEEEEEecCccceeceeeecC
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI-GRYISENYNGAALHP-IDFIDITTGQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
... ........+. .+.. ........ +..+ ....++. +.+ |+.+++.+.... . .....+ ..
T Consensus 148 ~~~-----~~~~~~~~~~-~~~~--~~~~~~~~~~~v~----~~~~~g~~~~~-d~~tg~~~w~~~-~--~~~~~~--~~ 209 (238)
T PF13360_consen 148 YPV-----GEPRGSSPIS-SFSD--INGSPVISDGRVY----VSSGDGRVVAV-DLATGEKLWSKP-I--SGIYSL--PS 209 (238)
T ss_dssp EES-----STT-SS--EE-EETT--EEEEEECCTTEEE----EECCTSSEEEE-ETTTTEEEEEEC-S--S-ECEC--EE
T ss_pred eec-----CCCCCCccee-eecc--cccceEEECCEEE----EEcCCCeEEEE-ECCCCCEEEEec-C--CCccCC--ce
Confidence 100 0000000000 0000 00000111 2111 2344454 555 999999775433 2 223322 45
Q ss_pred CCCcEEeecC-CCeEEEEcCCCchhhh
Q 013086 375 PRDDVLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 375 ~~~~~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
.++..|+.++ ++.|..||+.+|+.+.
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6777788777 9999999999998653
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.78 E-value=2.9e-05 Score=66.64 Aligned_cols=199 Identities=15% Similarity=0.226 Sum_probs=130.2
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
+..|.+....++++--..+.|..|+..++....... .. ...+++... +..|+.+...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~-~~G~~~~~~-~g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PG-PNGMAFDRP-DGRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SS-EEEEEEECT-TSEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CC-CceEEEEcc-CCEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578998433788888888999999998876654332 12 778888844 45556666554 5666999887665555
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcCC--------CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
.... .......+.+++.++|++.++.... |.|..++.. ++.. .....-...+.|+|+| +++.
T Consensus 78 ~~~~----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~----~~~~~~~~pNGi~~s~-dg~~ 147 (246)
T PF08450_consen 78 LPDG----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT----VVADGLGFPNGIAFSP-DGKT 147 (246)
T ss_dssp EETT----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE----EEEEEESSEEEEEEET-TSSE
T ss_pred ccCC----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE----EEecCcccccceEECC-cchh
Confidence 4211 1122348899999999977775543 568888877 3321 1111222588999999 7775
Q ss_pred E-EEEeCCCeEEEEEccCCCC----CCceeecCC-CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 230 L-LSCGNDHFARIWDIRRLEA----GSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 230 l-~~~~~dg~i~iwd~~~~~~----~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
| ++-+..+.|..|++..... ...+..... .+..-.+++..+|++.++....+.|.+++.+ |++
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 5 5667788999999864322 112222222 2357889999999988887788999999986 654
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=8.9e-07 Score=75.96 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=73.0
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
...+.+|...|..++|+|...-++..++.+..|+|.|+++......+. .+ ..+++++|.-+..++++.|...|.|.+|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 457788999999999999885588899999999999999988877774 44 8899999998878899999999999999
Q ss_pred eCCCCc
Q 013086 146 DLETGL 151 (449)
Q Consensus 146 d~~~~~ 151 (449)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998654
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.9e-07 Score=85.78 Aligned_cols=186 Identities=12% Similarity=0.176 Sum_probs=130.6
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
.+.++|++++. ++|+-|..+|.|++++..... ...+ .|... ... |.++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~-Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILE-GEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc-cccc--ccccc------ccC-CceEEEecCCCcEEEeeccCCcc
Confidence 46788888863 579999999999999987654 2222 25443 344 99999999999999999998888
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecC-----CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPE-----KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
...+.+.. ++.+++++|+ .+.+++|+..| +.++.-+-.... .....+...++|.++.| .+
T Consensus 106 ~~~~df~r----------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~i~W---~g 170 (846)
T KOG2066|consen 106 ITQYDFKR----------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSVVLSEGEGPIHSIKW---RG 170 (846)
T ss_pred ceeEecCC----------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cceeeecCccceEEEEe---cC
Confidence 77766543 3899999997 56899999988 766654332222 22256677789999999 56
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeec----CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
+++|-++.+| |++||+.+.+....+... ........+.|.++.+++ . |...+|+|..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEe
Confidence 8999988666 899999764432222111 112233467887665443 3 445589999887
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=1.1e-05 Score=69.11 Aligned_cols=223 Identities=18% Similarity=0.162 Sum_probs=130.5
Q ss_pred eEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe-cCCCEEEEEcCCCeEEEEECC
Q 013086 121 NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDAR 199 (449)
Q Consensus 121 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~ 199 (449)
.++.|.+..+.++++-...+.|..|+..++.... +... ....+++. ++ ..++++...+ +.++|+.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----------~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----------GPNGMAFDRPD-GRLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----------SEEEEEEECTT-SEEEEEETTC-EEEEETT
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----------CCceEEEEccC-CEEEEEEcCc-eEEEecC
Confidence 3678988537777776678999999998876543 2221 16677787 55 5555555544 4555988
Q ss_pred CCCCccceEEee--c-CCCceEEEEEcCCCCCEEEEEeCC--------CeEEEEEccCCCCCCceeecCCCCcEEEEEEc
Q 013086 200 TNSRSGEAILIH--R-KGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 268 (449)
Q Consensus 200 ~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (449)
+++... +.... . .....+.+++.| ++++.++.... |.|..++.. .+. ......-...+.|+|+
T Consensus 69 ~g~~~~-~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 69 TGKVTV-LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TVVADGLGFPNGIAFS 142 (246)
T ss_dssp TTEEEE-EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EEEEEEESSEEEEEEE
T ss_pred CCcEEE-EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE---EEEecCcccccceEEC
Confidence 875432 22221 1 334688999999 89877776644 557777765 222 1112234557899999
Q ss_pred CCCCEEE-EeeCCCcEEEEeCCCCCC-CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceE
Q 013086 269 PSGSKIL-TTSQDNRLRIWDSIFGNL-DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPID 346 (449)
Q Consensus 269 ~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~ 346 (449)
|+++.|+ +-+..+.|..|++..... .............. ..+-.++++.+ |++.+ +....+.|.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~~---------G~l~v---a~~~~~~I~ 208 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAVDSD---------GNLWV---ADWGGGRIV 208 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEEBTT---------S-EEE---EEETTTEEE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceEcCC---------CCEEE---EEcCCCEEE
Confidence 9999776 556678899999864332 11111111111111 01113444444 55444 233567899
Q ss_pred EEECCCceEEEEEecCccceeceeeec-CCCCcEE
Q 013086 347 FIDITTGQLVAEVMDPNITTISPVNKL-HPRDDVL 380 (449)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l 380 (449)
++|.. |+.+..+..+. ..++++ +| -++.+.|
T Consensus 209 ~~~p~-G~~~~~i~~p~-~~~t~~-~fgg~~~~~L 240 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPV-PRPTNC-AFGGPDGKTL 240 (246)
T ss_dssp EEETT-SCEEEEEE-SS-SSEEEE-EEESTTSSEE
T ss_pred EECCC-ccEEEEEcCCC-CCEEEE-EEECCCCCEE
Confidence 99987 99888888774 456666 67 4554433
No 311
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.72 E-value=4.2e-09 Score=95.12 Aligned_cols=204 Identities=17% Similarity=0.216 Sum_probs=137.5
Q ss_pred ccEEEEEEeCCCC-cEEEEEcCCCcEEEEeCcCCeee-EEEecccCCceeEEEEeeCCCCeEEEEeC----CCeEEEEeC
Q 013086 74 RRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGTVSCTDL 147 (449)
Q Consensus 74 ~~V~~~~~~~~~~-~~l~t~~~d~~i~vwd~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~ 147 (449)
..+.|++++-+.+ .+++.|..+|.|.+-........ ..+..+|..+.++++|++-+.+.|++|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3577777765543 58899999999999888664433 44447799999999999875677777643 677999999
Q ss_pred CCCce--eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 148 ETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 148 ~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
.++-. .....+.. .......+++|..+.+++++|.....+.++|++........ ... ..+..+.+.|.
T Consensus 137 ~s~ltvPke~~~fs~------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnT--k~vqG~tVdp~ 206 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSS------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNT--KYVQGITVDPF 206 (783)
T ss_pred ccccCCCcccccccc------ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhh--hhcccceecCC
Confidence 88722 22211111 11223557888888899999999999999999853322111 111 15777888888
Q ss_pred CCCEEEEEeCCCeEEEEE-ccCCCCCCceeecCC-----CCcEEEEEEcCC-CCEEEEeeC-CCcEEEEeCCC
Q 013086 226 QPELLLSCGNDHFARIWD-IRRLEAGSSLCDLPH-----KRVVNSAYFSPS-GSKILTTSQ-DNRLRIWDSIF 290 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~-dg~i~vwd~~~ 290 (449)
.++++++-. ||.|.+|| .++.+. .+....+ ...+..++|.|. ..++++... .++|+++|+..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 888888766 99999999 443222 2222222 234899999993 234555544 57899999863
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=3.3e-05 Score=65.88 Aligned_cols=246 Identities=16% Similarity=0.104 Sum_probs=145.0
Q ss_pred ceeEEEEeeCCCCeEEEEeCCC-eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-----cCCCe
Q 013086 119 IVNNIRFNPTNDGTVYAASSDG-TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-----DNFGF 192 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~ 192 (449)
....++.+|.....++.+-.-| ...+||..+++....+......+ ..=.-.|++||++|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEEEEeccccCCCcEE
Confidence 4456788886466677776655 47899999999888775544321 12235699999999996 34589
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC------------------CCeEEEEEccCCCCCCcee
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN------------------DHFARIWDIRRLEAGSSLC 254 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~ 254 (449)
|-+||....- ...-.+..++-....+.+.| ++..|+++.. +.++.+.|..+++......
T Consensus 79 IgVyd~~~~~--~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 79 IGVYDAARGY--RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEEECcCCc--EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 9999999322 12223444444567788999 8877776632 2345555665555433332
Q ss_pred ec--CCCCcEEEEEEcCCCCEEEEeeCCCc-------EEEEeCCCCCCCCCCccc-eecCCCCccccceeeeeccCCCCC
Q 013086 255 DL--PHKRVVNSAYFSPSGSKILTTSQDNR-------LRIWDSIFGNLDSPSREI-VHSHDFNRHLTPFRAEWDPKDPSE 324 (449)
Q Consensus 255 ~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (449)
.. -|.-.|..+++.++|..++..-..|. |-+++. ++........ .....+.+.. -+++++++
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~--gSIa~~~~---- 227 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYI--GSIAADRD---- 227 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCce--EEEEEeCC----
Confidence 21 26667899999998876665544332 333332 2211100000 0001111221 14555555
Q ss_pred ceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCC
Q 013086 325 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 394 (449)
Q Consensus 325 ~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~ 394 (449)
|.+++. ++-..+.+.+||..+++.+....-.. ++.+ +-.+++ ++++.+.|.+......
T Consensus 228 -----g~~ia~--tsPrGg~~~~~d~~tg~~~~~~~l~D---~cGv-a~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 228 -----GRLIAV--TSPRGGRVAVWDAATGRLLGSVPLPD---ACGV-APTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred -----CCEEEE--ECCCCCEEEEEECCCCCEeeccccCc---eeee-eecCCc-eEEeCCCccEEEccCc
Confidence 444431 56677899999999999987765443 4444 444555 7777766665444433
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.4e-07 Score=78.37 Aligned_cols=234 Identities=9% Similarity=0.018 Sum_probs=147.9
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeE
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFL 193 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i 193 (449)
.|...|+.+.-.. .+++.+++.||.++.|--..-.-+..+ .+ -..+...+.+++.+-++.++.+.+. |..+
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfV-Kh-----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFV-KH-----FRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeeh-hh-----hHHHHHHHHhhhccccceeEeeccCcccce
Confidence 3788888876654 789999999999999964321211111 11 1122234778888889999999777 9999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCC--CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
+++|+.+......... ....+.+ +...++.+. .+.++.-.++.+.++|-....+......--|..+|..+.++|-+
T Consensus 79 KvfDvEn~DminmiKL-~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKL-VDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeeccchhhhccc-ccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 9999988665432211 1111112 222222111 22333345789999998764433333333589999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
..+++....|.|.-|.... ....|.. .+.|.+.
T Consensus 157 Ds~vSiD~~gmVEyWs~e~-~~qfPr~---------------~l~~~~K------------------------------- 189 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEG-PFQFPRT---------------NLNFELK------------------------------- 189 (558)
T ss_pred cceeeccccceeEeecCCC-cccCccc---------------ccccccc-------------------------------
Confidence 9999999999999998753 1111110 1222222
Q ss_pred CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
...-+..+.-.. ....++ .|+|++..+.+-+ |..|+++.+.+|+.++.+.+...
T Consensus 190 ~eTdLy~f~K~K-t~pts~-Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 190 HETDLYGFPKAK-TEPTSF-EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred ccchhhcccccc-cCccce-EEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 111111111111 334455 7999999999988 99999999999998888765433
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.1e-06 Score=82.02 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=119.3
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
...+.+++++ +.+|+-|+.+|.|++++..... ...+. +. . -..+|.++++++.||.|.+-
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s-------------~--~~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFD-HS-------------S--SILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccc-cc-------------c--cccCCceEEEecCCCcEEEe
Confidence 4567778887 6799999999999999876442 21111 10 0 15579999999999999999
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCC----CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
.+-+.+... ......++.+++++|. ....+++|+..| +.++.-+-......+......++|.++.| .|+
T Consensus 99 sl~~~~~~~----~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~ 171 (846)
T KOG2066|consen 99 SLFTDDEIT----QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGN 171 (846)
T ss_pred eccCCccce----eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCc
Confidence 988876542 2233337999999993 256899999888 88887654444334433356789999999 688
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 320 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (449)
++|-++.+| |+|||+.+++.+....... ........+..+.|.+.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQDE 216 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEecCC
Confidence 999888665 9999998887644222111 22222223345778776
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=2.8e-06 Score=79.11 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=167.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC-----------CCeEEEEeCCCeEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-----------DGTVYAASSDGTVS 143 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~dg~v~ 143 (449)
.-.++.|+|.| ++|-|+. ..|.|-|..+.+.+..+ .-|...|+.+.|.|-. .-.|+++...|.|.
T Consensus 17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc--eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 36788999998 6788774 57999999888888777 5699999999998752 12466777789999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec---CC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP---EK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
+||...+..+..+..+... +..++|-+ +. ..|++-.....+.+|+..++....+. ........|
T Consensus 93 l~d~~~~s~~~~l~~~~~~---------~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~---~ys~~iLs~ 160 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDS---------VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY---DYSHEILSC 160 (1062)
T ss_pred EEEehhhhhhhhhcCCCcc---------hhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---ccCCcceee
Confidence 9999988777766554443 66777765 33 46777788889999999998765432 222235677
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
+.+.|.+...+..-+..|.+.+-+.-...... ..++.-.|++=.-++......+++. +..+...
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~---~pgk~~qI~sd~Sdl~~lere~at~-------ns~ts~~------ 224 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD---VPGKEFQITSDHSDLAHLERETATG-------NSTTSTP------ 224 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCC---CCceeEEEecCccchhhhhhhhhcc-------ccccCCC------
Confidence 99999999988888888988887764322110 0112222222111111111222211 1111000
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC--
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-- 377 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~-- 377 (449)
....+... ....+|+|.-.+..+.+. ...+.++|++-..++....-.. +.+.-+ .+-|++
T Consensus 225 --~sa~fity--~a~faf~p~~rn~lfi~~------------prellv~dle~~~~l~vvpier-~~akfv-~vlP~~~r 286 (1062)
T KOG1912|consen 225 --ASAYFITY--CAQFAFSPHWRNILFITF------------PRELLVFDLEYECCLAVVPIER-GGAKFV-DVLPDPRR 286 (1062)
T ss_pred --cchhHHHH--HHhhhcChhhhceEEEEe------------ccceEEEcchhhceeEEEEecc-CCccee-EeccCCCc
Confidence 00011100 124567776544444432 2457899998887777765443 222222 454554
Q ss_pred cEEeecC-CCeEEEEcCCC
Q 013086 378 DVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~~ 395 (449)
..|.+.- ||.+.||-.+.
T Consensus 287 d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEecCCeEEEEEeec
Confidence 5677777 99999997654
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.62 E-value=2.2e-05 Score=74.28 Aligned_cols=297 Identities=15% Similarity=0.102 Sum_probs=161.8
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccC-----Ccee--EEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-----CIVN--NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 160 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~-----~~v~--~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 160 (449)
.++.++.++.+.-.|..+++.+........ ..+. .+... + +..++.++.++.|.-+|.++|+.+..+....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~-~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D-PRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c-CCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 356667789999999998887766532211 0010 11111 1 2688888899999999999999998876543
Q ss_pred CCCCCCCcccceeEEEEecCCCEEEEEc---------CCCeEEEEECCCCCCccceEEeecC-----------------C
Q 013086 161 NGWHGPRTWRMLYGMDINPEKGVVLVAD---------NFGFLYLVDARTNSRSGEAILIHRK-----------------G 214 (449)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~-----------------~ 214 (449)
........ .....+. +..+++++ .+|.+..+|..+++........... .
T Consensus 141 ~~~~~~~i---~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 141 QVPPGYTM---TGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CcCcceEe---cCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 21000000 0111111 24455553 3678999999988765433221110 0
Q ss_pred Cce-EEEEEcCCCCCEEEEEeCCC------------------eEEEEEccCCCCCCceeecCCCC----cEEEEEEc---
Q 013086 215 SKV-VGLHCNPIQPELLLSCGNDH------------------FARIWDIRRLEAGSSLCDLPHKR----VVNSAYFS--- 268 (449)
Q Consensus 215 ~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~--- 268 (449)
..+ ...++.+ ....++.++.++ .|.-+|..+++..-......+.. ......+.
T Consensus 216 ~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 216 GTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 001 1234444 456677776555 68889988866643332221210 00001111
Q ss_pred -CCCC---EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceec-------ccC
Q 013086 269 -PSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS-------ENY 337 (449)
Q Consensus 269 -~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~ 337 (449)
-++. .+++++.+|.+...|.++|+.+-...... . ....+|. ..+........ ..+
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~---------~~~~~~~---~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--Q---------PMAYDPG---LVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--c---------ccccCCc---eEEEccccccccCcccccCCC
Confidence 1333 57788889999999999998643211100 0 0111110 00000000000 000
Q ss_pred CCCCCcceEEEECCCceEEEEEecCccc-------eeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 338 NGAALHPIDFIDITTGQLVAEVMDPNIT-------TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
....++.|.-.|+.+|+.+.+....... ....- .....+.+|+.++ ||.|+.+|.++|+.+.+.+....
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~-~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG-SLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc-ceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 1235678999999999988887644100 01000 0112456788877 99999999999998888765443
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=6.9e-05 Score=63.95 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=131.6
Q ss_pred EEEEEEeCCCCcEEEEEcCCCc-EEEEeCcCCeeeEEEecccCCce--eEEEEeeCCCCeEEEEeC-----CCeEEEEeC
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQ-VGVWDFYKVSEKIVYGNIHSCIV--NNIRFNPTNDGTVYAASS-----DGTVSCTDL 147 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~-i~vwd~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~-----dg~v~iwd~ 147 (449)
...++.+|.....++.+-.-|+ ..+||..++.....+.. ..+.- =.-.|+++ +++|++.-. .|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEEEEEC
Confidence 3457788866566777766554 67899998887766632 22211 13579999 888888643 588999999
Q ss_pred C-CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------------------CCeEEEEECCCCCCccceE
Q 013086 148 E-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------------------FGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 148 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~ 208 (449)
. +-+.+..+....-+ ...+.+.||+..|+++.. +..+.+.|..++..+.+..
T Consensus 85 ~~~~~ri~E~~s~GIG---------PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIG---------PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cCCcEEEeEecCCCcC---------hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 8 44555555433222 556779999988887631 2355566677776554322
Q ss_pred E-eecCCCceEEEEEcCCCCCEEEEEeCCC-------eEEEEEccCCCCCCceee-----cCCCCcEEEEEEcCCCCEEE
Q 013086 209 L-IHRKGSKVVGLHCNPIQPELLLSCGNDH-------FARIWDIRRLEAGSSLCD-----LPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 209 ~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~ 275 (449)
. ...+...+..+++.+ ++..++..-..| -|.+++... ....+.. ......+-+|++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 1 122444789999998 777666655444 233444322 1111111 12456789999999998886
Q ss_pred Eee-CCCcEEEEeCCCCCCCC
Q 013086 276 TTS-QDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 276 ~~~-~dg~i~vwd~~~~~~~~ 295 (449)
+.+ ..+.+.+||..+++++.
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred EECCCCCEEEEEECCCCCEee
Confidence 655 57899999999998754
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=0.00021 Score=58.37 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=84.7
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 80 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
...++...+++.|+..+.+.--|..++....... -...+.+-+.-- +++++.|...|.+++.+..+|.....+...
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 3445555788999999999999999988777654 344454444432 778999999999999999999777766543
Q ss_pred CCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc
Q 013086 160 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 205 (449)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 205 (449)
..- -......+++.++..|+.|++.+..|.++...+.
T Consensus 93 ~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 93 ETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred hhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 321 1234467789999999999999999998866543
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=2.4e-05 Score=76.82 Aligned_cols=210 Identities=10% Similarity=0.076 Sum_probs=134.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC----C
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL----E 148 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~----~ 148 (449)
.+.|.++.|..+.. -++.+...|.|.+-|.++......- .-...|.+++|+|+ .+.++..+..+++.+-+- -
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPD-EELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCC-CcEEEEEeCCcEEEEEeccccch
Confidence 46899999999884 4666777899999988876554443 25678999999999 999998888887766432 1
Q ss_pred CCcee-------------------eeeecCCCCC------------CCCCcccceeEEEEecCCCEEEEE-----cCCCe
Q 013086 149 TGLAL-------------------SLMNVNPNGW------------HGPRTWRMLYGMDINPEKGVVLVA-----DNFGF 192 (449)
Q Consensus 149 ~~~~~-------------------~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~ 192 (449)
..+.+ ..+....... ........=..+.|--||.++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11111 0111100000 000001113458899999999983 33379
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe---CCCeEEEEEccCCCCCCceeecC-CCCcEEEEEEc
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFS 268 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~ 268 (449)
|++||.. +.... ......+--.+++|-| .|..+++-. .|+.|.+|.-+....+....... ....+..++|+
T Consensus 224 irV~drE-g~Lns---~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 224 IRVYDRE-GALNS---TSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred EEEeccc-chhhc---ccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 9999987 32211 1111222456899999 888888764 35679999876544433222222 33348999999
Q ss_pred CCCCEEEE---eeCCCcEEEEeCCCC
Q 013086 269 PSGSKILT---TSQDNRLRIWDSIFG 291 (449)
Q Consensus 269 ~~~~~l~~---~~~dg~i~vwd~~~~ 291 (449)
.++..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999988 444556999987543
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.59 E-value=3.4e-05 Score=66.54 Aligned_cols=287 Identities=11% Similarity=0.052 Sum_probs=160.7
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----------CCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----------DGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
+.+.|+|..+++.+..+..+.. -.+..+|+ ++.+++++. .-.|.+||..+-.....+.++......
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4799999999888777754443 34667898 888887642 346999999999999988887642111
Q ss_pred CCcccceeEEEEecCCCEEEEE--cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
.. .....++++.+++++++. +-...|.+.|+...+...++ ... .+.. .-|..+.-|.+.+.||.+.-..
T Consensus 93 ~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei---~~P--GC~~--iyP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 93 VV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI---DTP--GCWL--IYPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE---EGT--SEEE--EEEEETTEEEEEETTSCEEEEE
T ss_pred ec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee---cCC--CEEE--EEecCCCceEEEecCCceEEEE
Confidence 11 124567889999988885 55678999999987755322 111 1222 2232345577777899999888
Q ss_pred ccCCCCCCcee--ec-CCCC-cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCC---Ccccc-c-ee
Q 013086 244 IRRLEAGSSLC--DL-PHKR-VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF---NRHLT-P-FR 314 (449)
Q Consensus 244 ~~~~~~~~~~~--~~-~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~ 314 (449)
+.......... .+ .... ....-++...+..++..+.+|.|+--|+..... .....+...... .++.. . ..
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceee
Confidence 87432211111 11 1122 223444555566666678899999888865432 100000000000 00000 0 01
Q ss_pred eeeccCCCCCceEEEcceecccCCCC-CC--cceEEEECCCceEEEEEecCccceeceeeecCCCCc-EEee-cC-CCeE
Q 013086 315 AEWDPKDPSESLAVIGRYISENYNGA-AL--HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLAS-GS-SRSI 388 (449)
Q Consensus 315 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s-~s-dg~i 388 (449)
+++++......+..... . -++ .+ ..|-++|+.+++.+.++...+ .+.++ +.+.+.+ +|++ .. ++.|
T Consensus 243 ~A~~~~~~rlyvLMh~g--~---~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si-~Vsqd~~P~L~~~~~~~~~l 314 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQG--G---EGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSI-AVSQDDKPLLYALSAGDGTL 314 (342)
T ss_dssp EEEETTTTEEEEEEEE-------TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEE-EEESSSS-EEEEEETTTTEE
T ss_pred eeeccccCeEEEEecCC--C---CCCccCCceEEEEEECCCCeEEEEEeCCC--ccceE-EEccCCCcEEEEEcCCCCeE
Confidence 34443322111111100 0 111 11 348888999999999997653 35555 6666655 5544 33 8999
Q ss_pred EEEcCCCchhhhhhhc
Q 013086 389 FIWRPKEKSELVEQKE 404 (449)
Q Consensus 389 ~iw~~~~~~~~~~~~~ 404 (449)
.+||..+|+.+..+++
T Consensus 315 ~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 315 DVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEETTT--EEEEE--
T ss_pred EEEeCcCCcEEeehhc
Confidence 9999999998877664
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.56 E-value=0.0001 Score=69.78 Aligned_cols=268 Identities=18% Similarity=0.164 Sum_probs=144.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC----ce-eEEEEeeCCCCeEEEEe---------CCCeEEEEeCCCCcee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC----IV-NNIRFNPTNDGTVYAAS---------SDGTVSCTDLETGLAL 153 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~----~v-~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~ 153 (449)
.++.++.++.|.-+|.++++.+......-.. .+ ....+. +..++.++ .+|.|..+|..+|+.+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 4667778999999999999888776421110 01 112222 34555554 3688999999999998
Q ss_pred eeeecCCCCCCCCCcc------------cceeEEEEecCCCEEEEEcCCC------------------eEEEEECCCCCC
Q 013086 154 SLMNVNPNGWHGPRTW------------RMLYGMDINPEKGVVLVADNFG------------------FLYLVDARTNSR 203 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~ 203 (449)
..+............+ ..-...++.+.+..+++++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 8876532211000000 0012345555677888887665 799999998886
Q ss_pred ccceEEeecC------CCceEEEEEcCCCCC---EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 204 SGEAILIHRK------GSKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 204 ~~~~~~~~~~------~~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
.-........ .....-......++. .++.++.+|.+...|.++++..-..... ...+..+| ..+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceE
Confidence 6443211110 000000001011232 6778888999999999887653332211 11123333 222
Q ss_pred EEe------------------eCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc--CCCCCceEEEcceec
Q 013086 275 LTT------------------SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP--KDPSESLAVIGRYIS 334 (449)
Q Consensus 275 ~~~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~ 334 (449)
..+ ..+|.+.-.|+.+|+.+-.... ... ...|.- ......+++.+.++.
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~-------~~~----~~~~~~g~~~~~~~~~~~g~~v~ 410 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE-------GTI----RDSWNIGFPHWGGSLATAGNLVF 410 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC-------Ccc----ccccccCCcccCcceEecCCeEE
Confidence 221 2357788888888765321110 000 000100 000122334455444
Q ss_pred ccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEE
Q 013086 335 ENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL 380 (449)
Q Consensus 335 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 380 (449)
.++.++.|+.+|..+|+.+.++..........+ .+..+|++.
T Consensus 411 ---~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~-~~~~~g~~y 452 (488)
T cd00216 411 ---AGAADGYFRAFDATTGKELWKFRTPSGIQATPM-TYEVNGKQY 452 (488)
T ss_pred ---EECCCCeEEEEECCCCceeeEEECCCCceEcCE-EEEeCCEEE
Confidence 577899999999999999998876543333333 344455433
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=3.1e-07 Score=53.04 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=33.2
Q ss_pred eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 108 EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 108 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
.+..+ .+|...|++|+|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~-~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 34444 789999999999999 99999999999999997
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.8e-05 Score=73.59 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=127.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc-eeEEEEeeCCCCeEEEEeCCC-----eEEEEeCC
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-VNNIRFNPTNDGTVYAASSDG-----TVSCTDLE 148 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 148 (449)
.|+| |++.+ ..++.|+.+|.|.+.+-.- +....+ +.+... |..+..... ..+|++.+.|+ .|++|+++
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~s~-~~~~~f-qa~~~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNSSF-QLIRGF-QAYEQSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEecccc-eeeehh-eecchhhhhHhhcccC-ceEEEEEeecCCCCceEEEEeccc
Confidence 5665 45666 4789999999888876432 221223 445555 444443333 56888877764 48999987
Q ss_pred CCc------eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC--CCCccceEEeecCCCceEEE
Q 013086 149 TGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 149 ~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~ 220 (449)
.-+ ++.....-+ ...+....++.+++.+.+-+.+|+|..+|.|..+.-.- .+.. +....+....+|+.+
T Consensus 101 k~~~n~sP~c~~~~ri~~--~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFT--IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGL 177 (933)
T ss_pred ccCCCCCcceeeeeeeec--cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceee
Confidence 431 221111111 11122334588999999999999999999999985321 1111 233456666799999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
++.. ++..++.......|.+|.+.... ...... .|...+.|..+++....+++++. ..+.+|+...
T Consensus 178 ~~~~-d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 178 ALRS-DGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred EEec-CCceeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 9987 66652333335679999997433 233323 57778999999985555666553 4799999864
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.54 E-value=1.9e-06 Score=81.63 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=117.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---------CCeEEEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------DGTVSCT 145 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------dg~v~iw 145 (449)
.|+-|+.+ + +++.+|...|+|.+-|..+.+.+..+ ..|.+.|.++... ++.|++++. |.-|+||
T Consensus 179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEec--C-cEEEeecccceEEeecCCcCceeeee-eccccceeeeecc---CCeEEEeecccccccccccchhhhh
Confidence 45555443 4 68999999999999999999998888 7899999988776 789999975 5568999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCc-cceEEeecCCCceEEEEEc
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRS-GEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~ 223 (449)
|++..+.+.-+.++.. ..-+.|+|. ...+++++..|...+.|..+.... ......+..+..+..+.++
T Consensus 252 DLRmmral~PI~~~~~----------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYG----------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhhhccCCcccccC----------chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence 9998877766655433 344567775 357888899999999995543322 3333455555569999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEc
Q 013086 224 PIQPELLLSCGNDHFARIWDI 244 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~ 244 (449)
+ +++.++.|..+|.|.+|--
T Consensus 322 s-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 S-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred C-CCceEEEecccCcEeeecC
Confidence 9 9999999999999999974
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.9e-05 Score=73.15 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=104.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
...|.=-+++..+ .+++.|+.-|.+.+|+-..+........+-.+.+..+..+++ ..++|.|+..|.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 3344444556666 689999999999999988877665554444555666777887 88889999999999998876543
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC-CCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-SRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
.......... ..+...|++++|++++..+++|...|.|..-.+... .............+.|..+.+. +..+|+
T Consensus 111 ~~~~~~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLV 185 (726)
T KOG3621|consen 111 RDLDYVTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLV 185 (726)
T ss_pred Ccceeecccc---ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehH
Confidence 3322222111 123456999999999999999999999998887762 1111122233344567777776 444444
Q ss_pred EEe
Q 013086 232 SCG 234 (449)
Q Consensus 232 ~~~ 234 (449)
+..
T Consensus 186 Stl 188 (726)
T KOG3621|consen 186 STL 188 (726)
T ss_pred hhh
Confidence 443
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=4e-06 Score=79.50 Aligned_cols=182 Identities=13% Similarity=0.183 Sum_probs=132.3
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 167 (449)
.++.|+....+..+|+.+.+...... -....|+-|..+ ++.+++|...|+|.+-|..+-+.+.++..+...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s----- 219 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS----- 219 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee-ccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccc-----
Confidence 45666666677888888776665553 233346666554 789999999999999999999999999877653
Q ss_pred cccceeEEEEecCCCEEEEEcC---------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCe
Q 013086 168 TWRMLYGMDINPEKGVVLVADN---------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 238 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 238 (449)
+. +|.-.|+.|++++. |..|++||++..+.+..+ ..+.. ..-+.|+|.-...+++++..|.
T Consensus 220 ----iS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~---P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 220 ----IS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYG---PQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ----ee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccC---chhhhhcccccceEEEEecccc
Confidence 43 35667888888763 557899999987766432 22222 3557788866778999999999
Q ss_pred EEEEEccCCCCCC-ceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 239 ARIWDIRRLEAGS-SLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 239 i~iwd~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
..+-|..+..... ..... .....+..+.+++++..|+.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 9999954433321 11112 34455999999999999999999999999983
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=0.00011 Score=61.70 Aligned_cols=212 Identities=13% Similarity=0.067 Sum_probs=116.8
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
+.+.+-...+..|+|+|+.+.++++....+.|...+.. +..+..+.-.-.+....|++..+ +.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEE
Confidence 35556666799999999876888889889999888875 45555543223456888999866 66666655689999998
Q ss_pred CCCCc-e-----eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC--CCCccceEE------eec
Q 013086 147 LETGL-A-----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAIL------IHR 212 (449)
Q Consensus 147 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~------~~~ 212 (449)
+.... . ...+..... ......+-.++|.+.++.|+++-...-..+|.+.. ......... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S-------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccc----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 84321 1 112222111 12233489999999988888887766666665543 111100000 011
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC--C-----CCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--H-----KRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
.-..+.+++++|..+.+++.......|..+|.. ++....+.... | -...-.|+|.++|++.++ ++-+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 223588999999777788888888899999943 33222222211 1 135678999999965554 45555555
Q ss_pred E
Q 013086 286 W 286 (449)
Q Consensus 286 w 286 (449)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=6.2e-05 Score=68.69 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
..+|+....+........-...+.+.+.+++| +...++.|..||.|.+||...... . .....-.++.++|+|+|.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t--~--~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVT--L--LAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCee--e--eeeecccceEEEEcCCCc
Confidence 34666655443322223334556899999999 999999999999999999875322 1 113455678899999999
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q 013086 273 KILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~ 291 (449)
.+++|+..|.+.+||+.-.
T Consensus 313 i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCceEEEEEeecC
Confidence 9999999999999998643
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.46 E-value=0.00053 Score=62.80 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=82.9
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEe----CCCe----EEEEEccCCCCCC-ceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCG----NDHF----ARIWDIRRLEAGS-SLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~----i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
....+....++.|+-.+++.+.+.. .+|. -.+|+....+... .+..+...+.|.+++++|+...|+.|+.|
T Consensus 201 yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D 280 (545)
T PF11768_consen 201 YIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED 280 (545)
T ss_pred EEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC
Confidence 3344445677888875666665542 2343 3456665432211 12233688899999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
|.|.+||...+.... ......+..++|+|+ |.++. .|+..|.+.+||+.-...
T Consensus 281 gSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~---------gai~~---V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 281 GSIILYDTTRGVTLL----------AKAEFIPTLIAWHPD---------GAIFV---VGSEQGELQCFDMALSPI 333 (545)
T ss_pred CeEEEEEcCCCeeee----------eeecccceEEEEcCC---------CcEEE---EEcCCceEEEEEeecCcc
Confidence 999999987653211 011233457899998 66665 688899999999865443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=5.7e-05 Score=74.36 Aligned_cols=201 Identities=16% Similarity=0.240 Sum_probs=128.6
Q ss_pred cceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc----
Q 013086 170 RMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR---- 245 (449)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---- 245 (449)
..|.++.|..+.+.++++...|.|.+-|..+.... ....-...|.+++|+| +++.++..+.++++.+-.-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccch
Confidence 35999999999999999999999999988775432 2222334699999999 99999999888888775421
Q ss_pred CCCC----------------CC---ceeec----------------C---CCCcEEEEEEcCCCCEEEEee----CC-Cc
Q 013086 246 RLEA----------------GS---SLCDL----------------P---HKRVVNSAYFSPSGSKILTTS----QD-NR 282 (449)
Q Consensus 246 ~~~~----------------~~---~~~~~----------------~---~~~~v~~~~~~~~~~~l~~~~----~d-g~ 282 (449)
..+. ++ .+... + ..+.=++|.|--||.++++.. .+ ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 00 00000 0 011123588999999999843 23 79
Q ss_pred EEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe--
Q 013086 283 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-- 360 (449)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-- 360 (449)
|+|||-. |.+....... .... -.+.|-|. |..++....-..++.|.+|.-+ |-....+.
T Consensus 224 irV~drE-g~Lns~se~~----~~l~----~~LsWkPs---------gs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~ 284 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPV----EGLQ----HSLSWKPS---------GSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLP 284 (1265)
T ss_pred EEEeccc-chhhcccCcc----cccc----cceeecCC---------CCeEeeeeecCCCCcEEEEecC-CccccccccC
Confidence 9999986 5543221111 1111 16789996 5555555556777789999853 43333222
Q ss_pred cCcc-ceeceeeecCCCCcEEee---cC-CCeEEEEcCCC
Q 013086 361 DPNI-TTISPVNKLHPRDDVLAS---GS-SRSIFIWRPKE 395 (449)
Q Consensus 361 ~~~~-~~v~~v~~~~~~~~~l~s---~s-dg~i~iw~~~~ 395 (449)
.+.. ..+..+ +|+.++..||+ .. ...|++|-+.+
T Consensus 285 ~p~de~~ve~L-~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 285 FPLDEKEVEEL-AWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred Ccccccchhee-eecCCCCceeeeecccccceEEEEEecC
Confidence 1111 226677 89999999998 33 35599997655
No 331
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.41 E-value=0.0014 Score=62.50 Aligned_cols=306 Identities=15% Similarity=0.089 Sum_probs=166.0
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCcee----------EEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN----------NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~----------~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.++.|.-.|..+++.+......-...+. .+++. +..++.++.|+.|.-.|..+|+.+....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 4666677888999999998887766421111111 12222 4567788889999999999999988765
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEc------CCCeEEEEECCCCCCccceEEeecC------------------
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD------NFGFLYLVDARTNSRSGEAILIHRK------------------ 213 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~------------------ 213 (449)
...... .. .+.+--.-.++ .++++. .+|.|.-+|.++++.+-........
T Consensus 148 ~~~~~~-~~----~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 148 NGDYKA-GY----TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred cccccc-cc----cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 421110 00 01110001133 455543 2688999999887755432221111
Q ss_pred ----------CCce-EEEEEcCCCCCEEEEEeCC-----C-----------eEEEEEccCCCCCCceeecCCC-------
Q 013086 214 ----------GSKV-VGLHCNPIQPELLLSCGND-----H-----------FARIWDIRRLEAGSSLCDLPHK------- 259 (449)
Q Consensus 214 ----------~~~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~------- 259 (449)
+..+ ..+++.| ...++..+... + .|.-.|+++++..-.++...|.
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 1111 1346666 45555555422 2 5777788877765555544332
Q ss_pred CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCCCCCcc-----ceecCCCC------------------------
Q 013086 260 RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSRE-----IVHSHDFN------------------------ 307 (449)
Q Consensus 260 ~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~------------------------ 307 (449)
....-+.+..+|+ .++.+..+|.+.+.|-++|+.+..... ........
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~ 380 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVC 380 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEEC
Confidence 1122233334666 788999999999999999987521110 00000000
Q ss_pred ----ccccceeeeeccCCCCCceEEEcc-----------------eeccc-----CCCCCCcceEEEECCCceEEEEEec
Q 013086 308 ----RHLTPFRAEWDPKDPSESLAVIGR-----------------YISEN-----YNGAALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 308 ----~~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~-----~~~~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
+...=-..+++|......+.. +. |+... .....-+.|.-+|+.+|+.+.+...
T Consensus 381 Pg~~Gg~~W~~~A~Dp~~g~~yvp~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~ 459 (527)
T TIGR03075 381 PGFLGGKNWQPMAYSPKTGLFYVPA-NEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE 459 (527)
T ss_pred CCCcCCCCCCCceECCCCCEEEEec-ccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC
Confidence 000000134444322111111 11 00000 0011246788999999999988764
Q ss_pred CccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 362 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 362 ~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
.... .... ..-.+.+++.++ ||.++.+|.++|+++.++.....
T Consensus 460 ~~p~-~~~~--l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 460 DFPL-WGGV--LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred CCCC-CCcc--eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 4311 1111 122455677777 99999999999999988766543
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=8.5e-05 Score=69.52 Aligned_cols=233 Identities=14% Similarity=0.106 Sum_probs=128.6
Q ss_pred CCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEe--eCCCCeEEEEe------------------CCCeE
Q 013086 84 TNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAAS------------------SDGTV 142 (449)
Q Consensus 84 ~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~------------------~dg~v 142 (449)
|| ++|+.-.. +..|..-++...+....+.......+..+.|- |+ ..+++.++ ..+.+
T Consensus 140 dG-r~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~-t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DG-RYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPR-TGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ce-eEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCC-ccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 56 56666553 55666667766554444333334444444443 33 33333332 23556
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---C-eEEEEECCCCCCccceEEeecCCCceE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---G-FLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.+.|.++.+....+..... ...++++++++++++.+.+ | .+...+..... ........ .+
T Consensus 218 SvID~etmeV~~qV~Vdgn----------pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvfni~--~i- 281 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGN----------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVFNIA--RI- 281 (635)
T ss_pred EEEECccceEEEEEEeCCC----------cccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEEchH--HH-
Confidence 6777777666666655432 4567889999999888632 2 33333322211 00011000 00
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCC--CCCceeecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCC--
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLE--AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL-- 293 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-- 293 (449)
.++.+ ++++... .++.|.+.|.++.. ....+..+.-......+.++|||+++++++. +.++.|.|+.+.+.
T Consensus 282 -ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 282 -EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred -HHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 12333 5665555 35789999988610 1123433445666788999999999887765 89999999987542
Q ss_pred ---CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 294 ---DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+.+...+.. ...-...++...|+++ |.... +-.-|.+|-.||+.+
T Consensus 358 ~~~~~~~~~vva--evevGlGPLHTaFDg~---------G~ayt---slf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVA--EPELGLGPLHTAFDGR---------GNAYT---TLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEE--eeccCCCcceEEECCC---------CCEEE---eEeecceeEEEehHH
Confidence 111111111 1222344566778776 22222 234467899999876
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.00026 Score=62.51 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=98.5
Q ss_pred EEeCCCCcEEEEEcCCCc--EEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 80 EFHPTNNHILLSGDKKGQ--VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~d~~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
+|.++|+++|+.+..||. +.+.|+.+++..... .+-........++|+ ++.++-......|+-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 467889888888877765 555577776655544 332233345667788 6676555556789999999988776666
Q ss_pred cCCCCCCCCCcccceeEEEE--ecCCCEEEEEc----------------------CCCeEEEEECCCCCCccceEEeecC
Q 013086 158 VNPNGWHGPRTWRMLYGMDI--NPEKGVVLVAD----------------------NFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
.+..- .-...| +.++..++-.- ....|...|+.+++.. ..+..
T Consensus 120 ~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~----~v~~~ 186 (386)
T PF14583_consen 120 VPDDW---------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK----VVFED 186 (386)
T ss_dssp --TTE---------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE----EEEEE
T ss_pred CCccc---------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee----EEEec
Confidence 55331 222344 33444433221 1124555677765532 33444
Q ss_pred CCceEEEEEcCCCCCEEEEEeCC---C-eEEEEEccCCCC-CCceeecCCCCcEEEEEEcCCCCEEEEeeC-----CCcE
Q 013086 214 GSKVVGLHCNPIQPELLLSCGND---H-FARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-----DNRL 283 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 283 (449)
...+..+.|+|.++.+|+-|-.. . .-+||-+++... ...+........+..=-|.|+|..|.--+. +..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 45789999999888888887642 2 135565553222 111211122234455568999987765332 4467
Q ss_pred EEEeCCCCC
Q 013086 284 RIWDSIFGN 292 (449)
Q Consensus 284 ~vwd~~~~~ 292 (449)
.-+|+.+++
T Consensus 267 ~~~d~~t~~ 275 (386)
T PF14583_consen 267 AGYDPDTGE 275 (386)
T ss_dssp EEE-TTT--
T ss_pred EeeCCCCCC
Confidence 777777664
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.34 E-value=0.00043 Score=60.54 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=131.2
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee---cCCC--
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN---VNPN-- 161 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~-- 161 (449)
+.|+.|..+| +.+++........... +...|..+...|. -+.+++-+ |+.+.++++..-....... ....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 4688888888 9999984433333332 4445999999997 66666655 5999999987654433211 0000
Q ss_pred CCCCCCcccceeEEE--EecCC-CEEEEEcCCCeEEEEECCCCCCcc-ceEEeecCCCceEEEEEcCCCCCEEEEEeCCC
Q 013086 162 GWHGPRTWRMLYGMD--INPEK-GVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 237 (449)
Q Consensus 162 ~~~~~~~~~~i~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 237 (449)
..........+..++ -...+ ..++++. ...|.+|......... .......-...+.+++|.+ +.++.|.. .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~-~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTS-K 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeC-C
Confidence 000011111234433 12233 3444444 4488888776642211 1222223334789999974 67777764 4
Q ss_pred eEEEEEccCCCCCCceeecC----------CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 238 FARIWDIRRLEAGSSLCDLP----------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
...+.|+.+........... ...++..+.. +++.+|++- |..-.+.|. .|+...
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r------------ 221 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR------------ 221 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc------------
Confidence 58888988654432221111 1123333333 345555542 323333333 333211
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 363 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 363 (449)
...+.|... ...+.....|+. +-.++.|.||++.++++++.+....
T Consensus 222 ----~~~i~W~~~--p~~~~~~~pyli----~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 222 ----KSTIQWSSA--PQSVAYSSPYLI----AFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred ----ccEEEcCCc--hhEEEEECCEEE----EECCCEEEEEECcCCcEEEEEECCC
Confidence 114566543 345555566776 3445669999999999999987665
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=4.7e-06 Score=78.48 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=62.0
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
+++++|+|.. .+|+.|-.-|.+.+|...+.+..... ..|..+|..+.|+++ |..++++..-|.|.+|....
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~-~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVV-ETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeec-cCCCCCceeEEecCC-CCeEEEcCCCceeEEEEeee
Confidence 5679999987 78899999999999998876655555 579999999999999 99999999999999998763
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00019 Score=68.30 Aligned_cols=155 Identities=10% Similarity=0.106 Sum_probs=95.2
Q ss_pred EEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-----eEEEEEC
Q 013086 124 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDA 198 (449)
Q Consensus 124 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~ 198 (449)
+|++. +..++.|+.+|.|.+.+-. -+.+..+...... .+..+-...+..+|++.+.|+ .+++|++
T Consensus 30 c~~s~-~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s--------iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 30 CCSSS-TGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS--------IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred EEcCC-CceEEEeeccccEEEeccc-ceeeehheecchh--------hhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 46676 8899999999998887632 2222333332221 133333333446677765543 6899999
Q ss_pred CCCCCcc--ceE---Ee-----ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC--CCceeecCCCCcEEEEE
Q 013086 199 RTNSRSG--EAI---LI-----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLPHKRVVNSAY 266 (449)
Q Consensus 199 ~~~~~~~--~~~---~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~ 266 (449)
....... ... .. .....++.+++++. +-..+|+|-.+|.|..+.-.-... .+.........+|+.++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 7642211 121 11 12345788999998 788999999999999985332111 11111124567899999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCC
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
+..+++.++.+..-..|.+|.+.
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EecCCceeEEEEecceeEEEEec
Confidence 99888874444445578888775
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.27 E-value=0.00061 Score=66.43 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=97.1
Q ss_pred CCeEEEE-eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC-------CCEEEEEcCCCeEEEEECCCC
Q 013086 130 DGTVYAA-SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-------KGVVLVADNFGFLYLVDARTN 201 (449)
Q Consensus 130 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~ 201 (449)
..+|+.- .....|+-.|++.|+.+.....+... .-..+.|+ ....+.|-.+..+..||+|-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc----------ceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 3444443 34678999999999999998876542 12333342 345677888889999999864
Q ss_pred CC--ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC
Q 013086 202 SR--SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 202 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
.. +..............|++-. ...+||+|+.+|.|++||--.... .....+...+|..|..+.||++|++.+
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRA--KTALPGLGDPIIGIDVTADGKWILATC- 637 (794)
T ss_pred CCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhh--hhcCCCCCCCeeEEEecCCCcEEEEee-
Confidence 31 11011111233457777766 566899999999999999432111 111225678999999999999988766
Q ss_pred CCcEEEEeCC
Q 013086 280 DNRLRIWDSI 289 (449)
Q Consensus 280 dg~i~vwd~~ 289 (449)
+..|.|++..
T Consensus 638 ~tyLlLi~t~ 647 (794)
T PF08553_consen 638 KTYLLLIDTL 647 (794)
T ss_pred cceEEEEEEe
Confidence 5578888864
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0011 Score=60.71 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=138.3
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCCCCcee
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLAL 153 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~ 153 (449)
..+++++.+.+.+++...+..|.+.|..+.........+. ....++++|+ +..++++.. ++++.+.|..+++..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCeEE
Confidence 4678888887677777778899999988777766665444 6788999999 666666554 689999999988888
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCcc-ceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
........ ...+++.|++..+++.. .++.|.+.|........ ..............+.+.| ++..+.
T Consensus 154 ~~~~vG~~----------P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~y 222 (381)
T COG3391 154 ATIPVGNT----------PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVY 222 (381)
T ss_pred EEEecCCC----------cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEE
Confidence 77443221 37889999999766665 78899999977654331 1000112222456788999 777555
Q ss_pred EEeCC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCC
Q 013086 232 SCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL 293 (449)
Q Consensus 232 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~ 293 (449)
+.... +.+...|..+..........+.. ....+.++|+|..+.+... .+.+.+-|..+...
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 44433 58888888764332211111222 4567899999999988754 47899988876554
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00018 Score=67.47 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=65.7
Q ss_pred CeEEEEeCCC-----CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCcc--------
Q 013086 140 GTVSCTDLET-----GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSG-------- 205 (449)
Q Consensus 140 g~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-------- 205 (449)
+.|.+.|..+ .+.+..+..... ...++++|||+++++++ .+..|.++|+.+.+...
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKs----------PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKN----------PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCC----------ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 4577777766 344444443332 67899999999888765 57899999998855310
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.+.....-+......+|.+ +++...+...|..|..||+..
T Consensus 366 ~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 0111111223456778888 888888999999999999875
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.0065 Score=56.06 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=92.4
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEE
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD 176 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 176 (449)
.|.||+............ + +.+.++.|+.+ ..|+....||.++++|+.. +. .+...............+....
T Consensus 62 ~I~iys~sG~ll~~i~w~-~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWD-S-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCEeEEEEEC-C-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 499999776544333322 3 89999999874 5566777899999999873 33 2222211100000001111222
Q ss_pred EecCCCEEEEEcCCCeEEEEECCCCCCc-cceEE-------eecCCCceEE-EEEcCCCCCEEEEEeCCCeEEEEEccCC
Q 013086 177 INPEKGVVLVADNFGFLYLVDARTNSRS-GEAIL-------IHRKGSKVVG-LHCNPIQPELLLSCGNDHFARIWDIRRL 247 (449)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-------~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 247 (449)
+..+| +++-..++.+.+..-...... ..... .+... .... ..++. +....+....++.+.+.+-...
T Consensus 135 ~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSS-DRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccccc-ccccceEeec-CcceEEEEecCCEEEEEEcccc
Confidence 22233 333344555554433221100 00000 00000 0111 22333 4444444455566665543321
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.. ....+++..|++||++++||.-..+|.+.+....-.
T Consensus 211 ---~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 211 ---KQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ---cc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 01 223468999999999999999999999999876543
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0023 Score=56.01 Aligned_cols=248 Identities=14% Similarity=0.092 Sum_probs=131.3
Q ss_pred CCeEEEEeCCCeEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 130 DGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
++.|+.|+.+| |.++++.. ......... ..|..+...++-+.+++-+. +.++++++..........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-----------~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL-----------SSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec-----------ceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccc
Confidence 77899999888 89999832 222222211 12888999888887766654 999999988755443110
Q ss_pred -----------EeecCCCceEEEE-EcCCCCCEEEEEeCCCeEEEEEccCCCC-C-CceeecCCCCcEEEEEEcCCCCEE
Q 013086 209 -----------LIHRKGSKVVGLH-CNPIQPELLLSCGNDHFARIWDIRRLEA-G-SSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 209 -----------~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
........+...+ -....+...++......|.+|....... . ..+..+.....+.+++|. ++.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEE
Confidence 0111112344444 1121333344444456899988876422 2 344455567889999997 5677
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecC---CCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
+.|..+ ...+.|+.++............. .......+..+.--++ +.++.+ .+. +-+|=-.
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~Ll~-----~~~-~g~fv~~ 215 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---------NEFLLC-----YDN-IGVFVNK 215 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---------ceEEEE-----ecc-eEEEEcC
Confidence 777655 58888998765422110000000 0000011111111111 222220 011 2122222
Q ss_pred CceEEE--EEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCchhhhhhhccceEEEEec
Q 013086 352 TGQLVA--EVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGK 413 (449)
Q Consensus 352 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~~~~~~~~~~~~~~c~~ 413 (449)
.|+... .+.=. .....+ ++ ...+|+...++.|.||++.+++.++.+..++-...+.+
T Consensus 216 ~G~~~r~~~i~W~--~~p~~~-~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 216 NGEPSRKSTIQWS--SAPQSV-AY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred CCCcCcccEEEcC--CchhEE-EE--ECCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEecC
Confidence 333222 11100 122222 22 34577777767799999999999988887776666543
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0012 Score=59.15 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=108.7
Q ss_pred cEEEEEcC----------CCcEEEEeCcCC-----eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 87 HILLSGDK----------KGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 87 ~~l~t~~~----------d~~i~vwd~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
.+++.|.. .|.|.++++... +..........++|++++-.. + .|+++. .+.|.+|++...+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTS
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcc
Confidence 57777642 288999999884 333333344688999998772 4 454444 4789999998887
Q ss_pred -eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 152 -ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
.......+... .+.++.. .++++++|+....+.++....................++++.+.+ +++.+
T Consensus 119 ~l~~~~~~~~~~--------~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~ 187 (321)
T PF03178_consen 119 TLLKKAFYDSPF--------YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTI 187 (321)
T ss_dssp SEEEEEEE-BSS--------SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEE
T ss_pred cchhhheecceE--------EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEE
Confidence 44433332211 1445444 467999999888888775543221111222333344688888886 44699
Q ss_pred EEEeCCCeEEEEEccCCC----CCC-ce---eecCCCCcEEEE---EEcC--CCC------EEEEeeCCCcEEEE
Q 013086 231 LSCGNDHFARIWDIRRLE----AGS-SL---CDLPHKRVVNSA---YFSP--SGS------KILTTSQDNRLRIW 286 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~----~~~-~~---~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~vw 286 (449)
+++..+|.+.++...... ... .+ ..+.....|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999999876311 111 12 222345677777 5445 222 47778889988843
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.11 E-value=0.003 Score=53.25 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=94.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+-...+..|+|+|+.+.++++....+.|..++. +|+.++.+.+.... -.-.+++..++.++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~--------D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG--------DYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-S--------SEEEEEE-STTEEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC--------CceeEEEECCCEEEEEEcCCCcE
Confidence 4455569999999985667777777889988887 47888887764321 27888898888888877789999
Q ss_pred EEEECCCCCCccce-----EE--ee-cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee---------c
Q 013086 194 YLVDARTNSRSGEA-----IL--IH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD---------L 256 (449)
Q Consensus 194 ~i~d~~~~~~~~~~-----~~--~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~ 256 (449)
.++++......... +. .. .....+-.++|+| .++.|+++-...-..+|.++.......+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 99998443221111 01 11 1233588999999 656566666666667777653111111100 0
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeC
Q 013086 257 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 257 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 288 (449)
.....+.+++++| .+.+++.+.....|..+|.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 1334578889998 4566666667777877773
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.0074 Score=57.64 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEecccC---CceeE-EEEeeCCCCeEEEEeC------CCeEEEEeCCCCceeeeeec
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYGNIHS---CIVNN-IRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMNV 158 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~~~h~---~~v~~-~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~ 158 (449)
++.++.|+.+.-.|..+++.+........ ..+++ .... +..++++.. +|.|..+|.++|+.+..+..
T Consensus 123 v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 123 VFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 55677789999999999888776532111 11211 1111 335555542 68999999999998877654
Q ss_pred CCCCCC-------------C----------CCcccceeEEEEecCCCEEEEEcCC-----C-----------eEEEEECC
Q 013086 159 NPNGWH-------------G----------PRTWRMLYGMDINPEKGVVLVADNF-----G-----------FLYLVDAR 199 (449)
Q Consensus 159 ~~~~~~-------------~----------~~~~~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~ 199 (449)
...... + +.....-..+++.+...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 322100 0 0011112245677777777776533 2 66777888
Q ss_pred CCCCccceEEeecCC-------CceEEEEEcCCCCC---EEEEEeCCCeEEEEEccCCCC
Q 013086 200 TNSRSGEAILIHRKG-------SKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEA 249 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~ 249 (449)
+++..-.... ..|. ....-+.+.. ++. .++.+..+|.+++.|.++++.
T Consensus 280 TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 280 TGKIKWHYQT-TPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCEEEeeeC-CCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 8776544322 2221 1122222222 454 788999999999999988765
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=2.6e-06 Score=77.62 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=127.1
Q ss_pred CCceeEEEEeeCCC-CeEEEEeCCCeEEEEeCCCCcee-eeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEc----C
Q 013086 117 SCIVNNIRFNPTND-GTVYAASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVAD----N 189 (449)
Q Consensus 117 ~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~----~ 189 (449)
...+.|+++..+.. ..+++|..+|.|-+-.++...-. ..+ .+......++++|++- .+.||+|- .
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~--------tp~~ar~Ct~lAwneLDtn~LAagldkhrn 127 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV--------TPGYARPCTSLAWNELDTNHLAAGLDKHRN 127 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccccee--------cccccccccccccccccHHHHHhhhhhhcc
Confidence 34567777765533 57888888999998877653322 111 1233345889999984 45666663 4
Q ss_pred CCeEEEEECCCCC--CccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC-CCCceeecCCCCcEEEEE
Q 013086 190 FGFLYLVDARTNS--RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAY 266 (449)
Q Consensus 190 dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~ 266 (449)
|..+.|||+.+.- +...............+++|.. +..++.+|.....+.++|++... ....+ ....+..+.
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~t 202 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGIT 202 (783)
T ss_pred cCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccce
Confidence 5689999998762 2211111112333566888886 88999999999999999998422 11222 234567788
Q ss_pred EcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcce
Q 013086 267 FSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 345 (449)
Q Consensus 267 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i 345 (449)
.+| .+.++++-. ||.|.+||.. .+...+...+.+... ......+.++|.|........ ..-..++|
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~-rnienpl~~i~~~~N-~~~~~l~~~aycPtrtglla~----------l~RdS~tI 269 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTY-RNIENPLQIILRNEN-KKPKQLFALAYCPTRTGLLAV----------LSRDSITI 269 (783)
T ss_pred ecCCCCCceeccc-cCceeeccch-hhhccHHHHHhhCCC-CcccceeeEEeccCCcchhhh----------hccCcceE
Confidence 888 788887766 9999999941 222222222222111 111123578999986322221 23345678
Q ss_pred EEEECC
Q 013086 346 DFIDIT 351 (449)
Q Consensus 346 ~iwd~~ 351 (449)
+.+|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 888874
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.0043 Score=50.97 Aligned_cols=144 Identities=14% Similarity=0.087 Sum_probs=90.2
Q ss_pred eCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc
Q 013086 127 PTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE 206 (449)
Q Consensus 127 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 206 (449)
++...+++.|+..+.+.--|..+|+.......... +.+-+.- -|++++.|+..|.+++.+..++.....
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~R----------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~ 88 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR----------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWN 88 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCce----------eeeeeEE-ECCEEEEEEccCcEEEEEecchhheee
Confidence 33366888899999999999999988766543221 3332222 477899999999999999999876654
Q ss_pred eEEeecCCCceEE-EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 207 AILIHRKGSKVVG-LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 207 ~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
..... .|.+ ....+ ++.++..|+.|++.+..|.++.......+. ..+.-.+-+..|-...|..+...|.+.-
T Consensus 89 f~~~~----~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskc--gG~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 89 FVILE----TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKC--GGGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred eeehh----hhccceEEcC-CCceEEEecCCCcEEEecccccceEEeccc--CCceeccceecCCCceEEEEeccceEEE
Confidence 32222 2322 23444 889999999999999999987444222211 1122233445552333444444554444
Q ss_pred EeC
Q 013086 286 WDS 288 (449)
Q Consensus 286 wd~ 288 (449)
-..
T Consensus 162 vt~ 164 (354)
T KOG4649|consen 162 VTK 164 (354)
T ss_pred Ecc
Confidence 343
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0036 Score=57.85 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=78.2
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
.......+.++|+ ++++++++ ||.-.++.....+....- .-..+.|.+ .+.+|+-..++.|.+
T Consensus 31 ~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~~G--------------~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 31 CEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKAFG--------------SGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp -SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEEEE--------------E-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCcccccC--------------ceeEEEEec-CccEEEEECCCeEEE
Confidence 3445789999998 88888855 788888874443332221 155678888 445777776888999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
+.--.......+ ... ..+..|- .|.+|...+. +.|.+||..+.+. +...... +|..+.|++++.+++
T Consensus 94 ~kn~~~~~~k~i-~~~---~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~---i~~i~v~-~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 94 YKNFKNEVVKSI-KLP---FSVEKIF----GGNLLGVKSS-DFICFYDWETGKL---IRRIDVS-AVKYVIWSDDGELVA 160 (443)
T ss_dssp EETTEE-TT------S---S-EEEEE-----SSSEEEEET-TEEEEE-TTT--E---EEEESS--E-EEEEE-TTSSEEE
T ss_pred EEcCccccceEE-cCC---cccceEE----cCcEEEEECC-CCEEEEEhhHcce---eeEEecC-CCcEEEEECCCCEEE
Confidence 743332221111 111 1233332 2566666654 4899999987444 4443333 489999999999999
Q ss_pred EeeCCCcEEEEeCC
Q 013086 276 TTSQDNRLRIWDSI 289 (449)
Q Consensus 276 ~~~~dg~i~vwd~~ 289 (449)
..+.+ .+.+++..
T Consensus 161 l~t~~-~i~il~~~ 173 (443)
T PF04053_consen 161 LVTKD-SIYILKYN 173 (443)
T ss_dssp EE-S--SEEEEEE-
T ss_pred EEeCC-eEEEEEec
Confidence 98866 78887754
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00045 Score=63.45 Aligned_cols=194 Identities=11% Similarity=0.127 Sum_probs=116.4
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcC--C-CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe--
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDK--K-GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT-- 141 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~--d-~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~-- 141 (449)
..+..-...+..-+|+|++..+....-. . ..+.++++.++....... ..+.-....|+|++..++++...||.
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 3444445567778899998654333222 2 359999999887666653 44555677899995455555566765
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CC--eEEEEECCCCCCccceEEeecCCCceE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|.+.|+.++...+ +...... -..=.|+|+|+.++..+. .| .|.++++...... .+..... .-.
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi---------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~--riT~~~~--~~~ 329 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGI---------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT--RLTFSGG--GNS 329 (425)
T ss_pred EEEEcCCCCccee-cccCCcc---------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--EeeccCC--CCc
Confidence 5556776665333 2211110 124468999998887654 34 5667777665542 2122222 223
Q ss_pred EEEEcCCCCCEEEEEeCC-Ce--EEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 219 GLHCNPIQPELLLSCGND-HF--ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
.-.|+| ++.+|+..+.. |. |.+.|+.+... ...+........-.|.++++.++..+..
T Consensus 330 ~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 330 NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CccCCC-CCCEEEEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccC
Confidence 778999 89888887753 43 66666654332 3333444455566788888877765543
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.98 E-value=0.015 Score=54.24 Aligned_cols=201 Identities=10% Similarity=0.105 Sum_probs=106.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCC----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-----------
Q 013086 75 RVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----------- 139 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------- 139 (449)
.+..+.++|+|+.++++-+..| .++++|+.++..+..... ......+.|.++ ++.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d-~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDD-GKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTT-SSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCC-CCEEEEEEeCcccccccCCCC
Confidence 3446889999965555545555 499999999876654322 222234999998 5555444322
Q ss_pred CeEEEEeCCCCcee--eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc---CC-CeEEEEECCCCC-CccceEEeec
Q 013086 140 GTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NF-GFLYLVDARTNS-RSGEAILIHR 212 (449)
Q Consensus 140 g~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~-~~~~~~~~~~ 212 (449)
..|+.|.+.+.... ..+...... .....+..++++++++... .+ ..+++.|+.... ..........
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 23788888776544 233222211 1156788899999887643 22 468888888751 1111222222
Q ss_pred CCCce-EEEEEcCCCCCEEEEEe---CCCeEEEEEccCCCCCCce-eecCCCC--cEEEEEEcCCCCEEEEee-CCC--c
Q 013086 213 KGSKV-VGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSL-CDLPHKR--VVNSAYFSPSGSKILTTS-QDN--R 282 (449)
Q Consensus 213 ~~~~v-~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~~~~-~dg--~ 282 (449)
....+ ..+... ++.+++... ..+.|...++......... ....+.. .+..+.. .+.+|+... .++ .
T Consensus 275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSR 350 (414)
T ss_dssp SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence 22233 333333 344444332 2457777788765432212 2234544 3444444 455555444 343 5
Q ss_pred EEEEeCC
Q 013086 283 LRIWDSI 289 (449)
Q Consensus 283 i~vwd~~ 289 (449)
|+++++.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8888887
No 350
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.0052 Score=51.66 Aligned_cols=177 Identities=14% Similarity=0.055 Sum_probs=110.2
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.+.|-...|.++.|+|+.+. |++......-.||=...+..+.++.-..-.....|.|..+ ++++++--.++.+.++.+
T Consensus 80 pi~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 80 PILGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEE
Confidence 34555666999999999854 5554545555566555666666554323344567788876 777777777899999887
Q ss_pred CCCceeeeeecCCCCCC-CCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce--EEeecC-----CCceEE
Q 013086 148 ETGLALSLMNVNPNGWH-GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA--ILIHRK-----GSKVVG 219 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~-----~~~v~~ 219 (449)
.............-... ..........++|.|.+..|+++-+..-+.+|........... ...+.. -..+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 76533222111000001 1111455889999999999999988887777765533211100 000110 125788
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
+.|++..+.+++.+.+++.+.-.|...
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC
Confidence 899987778888888888888888753
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.90 E-value=0.013 Score=54.77 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=127.7
Q ss_pred eeEEEEeeCCCCeEEEE-eCCC----eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-----
Q 013086 120 VNNIRFNPTNDGTVYAA-SSDG----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN----- 189 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----- 189 (449)
+....++|+ +++++.+ +..| .|+++|+.+|+.+....... ....+.|.++++.|+....
T Consensus 126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----------~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----------KFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----------ESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----------ccceEEEeCCCCEEEEEEeCcccc
Confidence 446788999 7766654 4444 49999999997765321110 1234999999887766542
Q ss_pred ------CCeEEEEECCCCCCccceEEeecCCCc-eEEEEEcCCCCCEEEEEeCC----CeEEEEEccCC--CCCCceeec
Q 013086 190 ------FGFLYLVDARTNSRSGEAILIHRKGSK-VVGLHCNPIQPELLLSCGND----HFARIWDIRRL--EAGSSLCDL 256 (449)
Q Consensus 190 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~ 256 (449)
...|+.|.+.+......++........ ...+..++ ++++|+..... ..+++.++... .........
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 335788888776543222222222223 66888888 88877654332 35778888753 111111112
Q ss_pred CCCCcE-EEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCC--CCCceEEEc
Q 013086 257 PHKRVV-NSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD--PSESLAVIG 330 (449)
Q Consensus 257 ~~~~~v-~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 330 (449)
.....+ ..+... .+.+++.... .+.|...++........ . .....+.. ....+...+
T Consensus 274 ~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~-~---------------~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 274 PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEW-W---------------TVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGE-E---------------EEEE--SSSEEEEEEEEET
T ss_pred CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccc-e---------------eEEcCCCCceeEEEEEEEC
Confidence 222333 333333 4434433322 35566666654332000 0 01111111 012222334
Q ss_pred ceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe--ecC---CCeEEEEcCCCchh
Q 013086 331 RYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA--SGS---SRSIFIWRPKEKSE 398 (449)
Q Consensus 331 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~--s~s---dg~i~iw~~~~~~~ 398 (449)
.+++....-.....|+++++..+.....+.....+.+..+ ...+++..+. ..| -+.++.||+.+++.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGV-SGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEE-ES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEecc-CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4554433444556799999985566666655554555555 4445444332 233 28899999998863
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0084 Score=54.65 Aligned_cols=211 Identities=15% Similarity=0.154 Sum_probs=116.4
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee------------------------------------------EEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK------------------------------------------IVY 112 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~------------------------------------------~~~ 112 (449)
.|+.+.|+++. .-|+.|...|.|.||.+...+.. ..+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999986 35888889999999976432111 111
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-----CC---CEE
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EK---GVV 184 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~---~~l 184 (449)
.....++|++++.+. -.+++.|..+|.+.|.|++....+..-.... ..........++++.|.- |+ -.+
T Consensus 82 ~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 123468899999974 6799999999999999998877776644433 111222233477777763 33 478
Q ss_pred EEEcCCCeEEEEECCC-C-C-CccceEEee-cCCCceEEEE-EcCC--------------------CCCEEEEEeCCCeE
Q 013086 185 LVADNFGFLYLVDART-N-S-RSGEAILIH-RKGSKVVGLH-CNPI--------------------QPELLLSCGNDHFA 239 (449)
Q Consensus 185 ~~~~~dg~i~i~d~~~-~-~-~~~~~~~~~-~~~~~v~~~~-~~~~--------------------~~~~l~~~~~dg~i 239 (449)
++|+..|.+.+|.+.- . . ......... .+.+++..+. ++.. -..+++++ .+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 8999999999998752 1 1 111111111 2334555444 2111 01244444 46789
Q ss_pred EEEEccCCCCCCceeecCCCCcEEEEEEc-----CCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 240 RIWDIRRLEAGSSLCDLPHKRVVNSAYFS-----PSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
+++...+.+... +.+...-....+.+- ..+..|++-..+|.|++|.+..-+
T Consensus 238 rv~~~~~~k~~~--K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 238 RVFKPPKSKGAH--KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EEE-TT---EEE--EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEEeCCCCcccc--eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 999887644322 222222223334442 256678888899999999996533
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.019 Score=52.56 Aligned_cols=272 Identities=16% Similarity=0.173 Sum_probs=158.5
Q ss_pred EEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE
Q 013086 98 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 177 (449)
Q Consensus 98 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 177 (449)
+.+++..+......+. -......+...+.+.+..++-.....+...+.............. .....+++
T Consensus 13 ~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---------~~p~~i~v 81 (381)
T COG3391 13 VSVINTGTNKVTAAIS--LGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---------VYPAGVAV 81 (381)
T ss_pred eEEEeecccEEEEEee--cCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---------ccccceee
Confidence 5566655554444442 122566677777722333333333345554444222111111110 12557788
Q ss_pred ecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCce
Q 013086 178 NPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 178 ~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~ 253 (449)
++.+..+.+ ...+..|.+.|..+....... ..+.....++++| ++..+.++.. ++.+.+.|..+.......
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~----~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSI----PVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEe----eeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 888885554 455689999997765544322 1222577899999 6655555544 688888888765554332
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcce
Q 013086 254 CDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 332 (449)
Q Consensus 254 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 332 (449)
.. + ..+ ..++++|+|..+++.. .++.|.+.|........ ... .........+..+.++|+ |.+
T Consensus 157 ~v-G-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~~---------g~~ 220 (381)
T COG3391 157 PV-G-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDPD---------GNR 220 (381)
T ss_pred ec-C-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECCC---------CCE
Confidence 11 2 223 8899999999776665 68899999976554432 110 001222223346777777 332
Q ss_pred ecccCCCCCCcceEEEECCCceEEEE-EecCccceeceeeecCCCCcEEeecC--CCeEEEEcCCCchhhhhhh
Q 013086 333 ISENYNGAALHPIDFIDITTGQLVAE-VMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 333 ~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~s--dg~i~iw~~~~~~~~~~~~ 403 (449)
+-....++.++.+...|..++..... +..... ....+ .++|+|..+.+.. .+.+.+-|..+........
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v-~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV-AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce-eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22111334467899999998887776 333332 33444 7999999998875 4889999988876555443
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.89 E-value=0.0029 Score=45.04 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=66.9
Q ss_pred EEEEEEeC---CCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 76 VTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 76 V~~~~~~~---~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
|++|++.. +|..-|+.|+.|..|+||+-. ..+..+. -...|+++.-.. ...|+.+..+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--e
Confidence 56666654 555779999999999999854 3444443 556788887776 46799999999999997532 2
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecC---C-CEEEEEcCCCeEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPE---K-GVVLVADNFGFLY 194 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~~l~~~~~dg~i~ 194 (449)
+..++... .+.++++..- | ..|++|-.+|.|-
T Consensus 74 lWRiKSK~----------~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKN----------QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCC----------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33332211 1555554432 2 3788888888764
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0002 Score=66.64 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=89.3
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 251 (449)
+.--+++..+.+++.|+..|.+++|+-..+...... .....+.+....+++ ...++|+|+..|.|.++-+.......
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc--ccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 444456678899999999999999998877654322 212333566677888 88899999999999999887744433
Q ss_pred ceeec----CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 252 SLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 252 ~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
..... .|...|++++|++++..|++|...|.|.+-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33222 3678999999999999999999999999988876
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.83 E-value=0.0094 Score=54.16 Aligned_cols=269 Identities=11% Similarity=0.107 Sum_probs=131.1
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCC-CCCCC------
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG-WHGPR------ 167 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~------ 167 (449)
.+.+.|||+.++....... ....+....|+|+ ++.++... ++.|.+++..++...+........ ..+..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP--PPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS---EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcC--CccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 4678999999866554432 2678899999999 88888776 678999998887444322211110 00000
Q ss_pred -cccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 168 -TWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 168 -~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
....-..+-|+||+++|+.... +..|..+.+........ .-..+..+.+-- -|.-.. .-.+.++|+.
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk-~G~~np----~v~l~v~~~~ 166 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPK-AGDPNP----RVSLFVVDLA 166 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--B-TTS-------EEEEEEEESS
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCC-CCCcCC----ceEEEEEECC
Confidence 0122467889999999888643 33333333221111000 000233333321 121111 1246678887
Q ss_pred CCCCCCceee---cCCCCcEEEEEEcCCCCEEEEee--CC---CcEEEEeCCCCCCCCCCccceecCCCCccccce-eee
Q 013086 246 RLEAGSSLCD---LPHKRVVNSAYFSPSGSKILTTS--QD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAE 316 (449)
Q Consensus 246 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~--~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (449)
+++....-.. ......+..+.|.+++..|+..- .+ -.+.+.|..++.... .........+... ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-----~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-----VLEETSDGWVDVYDPPH 241 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-----EEEEESSSSSSSSSEEE
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-----EEEecCCcceeeecccc
Confidence 6554321111 13456788999999998444432 22 246667777665421 1111111222111 222
Q ss_pred ec-cCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEee-cC-C----CeEE
Q 013086 317 WD-PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS-GS-S----RSIF 389 (449)
Q Consensus 317 ~~-~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s-~s-d----g~i~ 389 (449)
|. ++.. .++... ....-..|.+++...+... .+..+. -.|..+..++++++.|.. +. + ..|+
T Consensus 242 ~~~~~~~--------~~l~~s-~~~G~~hly~~~~~~~~~~-~lT~G~-~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 242 FLGPDGN--------EFLWIS-ERDGYRHLYLYDLDGGKPR-QLTSGD-WEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp E-TTTSS--------EEEEEE-ETTSSEEEEEEETTSSEEE-ESS-SS-S-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred cccCCCC--------EEEEEE-EcCCCcEEEEEccccccee-ccccCc-eeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 22 3321 111100 1122456777787766643 444333 445455588888775543 43 2 3444
Q ss_pred EEcCC
Q 013086 390 IWRPK 394 (449)
Q Consensus 390 iw~~~ 394 (449)
.-++.
T Consensus 311 ~v~~~ 315 (353)
T PF00930_consen 311 RVSLD 315 (353)
T ss_dssp EEETT
T ss_pred EEEeC
Confidence 44555
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.74 E-value=0.013 Score=52.48 Aligned_cols=178 Identities=10% Similarity=0.001 Sum_probs=105.4
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEee---C---CCCeEEEEeC----------CCeEEEEeCCCC-----ceeee
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP---T---NDGTVYAASS----------DGTVSCTDLETG-----LALSL 155 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~---~---~~~~l~s~~~----------dg~v~iwd~~~~-----~~~~~ 155 (449)
.|++.|..+...+..+.-.....+.+++... + ...+|++|+. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5778887776655544333444555554432 1 1456777653 288999999884 22211
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 235 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (449)
..... ...|++++-- +..++++. .+.|.+|++...+..... ........+.++... ++++++|..
T Consensus 83 ~~~~~--------~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~---~~~I~vgD~ 147 (321)
T PF03178_consen 83 HSTEV--------KGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVF---KNYILVGDA 147 (321)
T ss_dssp EEEEE--------SS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEE---TTEEEEEES
T ss_pred EEEee--------cCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhh-heecceEEEEEEecc---ccEEEEEEc
Confidence 11111 1237777665 33444444 378999999887722111 223333367777765 469999998
Q ss_pred CCeEEEEEccCCCC-CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 236 DHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 236 dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
...+.++..+.... ...+..-.....++++.|-++++.++++..+|.+.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888886543111 1112211345668899998766799999999999999874
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00018 Score=66.04 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCccccee-EEEEecCCCEEEEEcCCCeEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY-GMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 195 (449)
...+.-+.|+|. -.++|.+..+|.|.+..+. .+.+.++..+... ++ +++|.|||+.|++|-.||+|++
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~---------v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN---------VTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCc---------cceeeeecCCCCEEEEEecCCeEEE
Confidence 456888999999 9999999999999999988 6666776654443 44 9999999999999999999999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
.|..++..+..... ....+|.++-|.+
T Consensus 89 ~Dve~~~~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceecccc--ccccchheeeccc
Confidence 99999876644211 2223677887864
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=9.1e-05 Score=41.99 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=32.8
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEe
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 102 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd 102 (449)
++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 356778899999999999988 6899999999999996
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0025 Score=57.65 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=95.6
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-------EEEEEcCCCeEEEEECCCCCCc
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-------VVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
+|.++.....|+-.|++.|+.+....++.. |.-+.+.|+.+ .-++|-.+..|.-||++-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC----------cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 344555566799999999999988877654 55566666543 3455777889999999854331
Q ss_pred -cceEEeec--CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 205 -GEAILIHR--KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 205 -~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
....+.+. ......|++-. ...+|++|+.+|.|++||--....... ..+...+|..|..+.+|++|+..+ +.
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTA--LPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred eeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhc--ccccCCceeeEEeeccCcEEEEec-cc
Confidence 11111221 12234555544 567899999999999999732222112 235678899999999999987665 55
Q ss_pred cEEEEeCC
Q 013086 282 RLRIWDSI 289 (449)
Q Consensus 282 ~i~vwd~~ 289 (449)
.|.+-++.
T Consensus 493 yLlLi~t~ 500 (644)
T KOG2395|consen 493 YLLLIDTL 500 (644)
T ss_pred EEEEEEEe
Confidence 77777764
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00022 Score=67.74 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=84.6
Q ss_pred eeEEEEeeCCCCeEEEEeC----CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 120 VNNIRFNPTNDGTVYAASS----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
-+-..|+|. ..+|++++. .|+|.|| .++|++...+..+ ..+.+++|+|..-.|+.|-.-|.+.+
T Consensus 18 sti~SWHPs-ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P----------~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 18 STISSWHPS-EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP----------VHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccCCC-CceeEEEEecCCCCceEEEE-ecCCCCCcccccc----------eehhhhccChHHHHHhhccccceeEE
Confidence 344579998 888888764 5788888 4566654433322 12778999999999999999999999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
|...+.+... ....|..+|..+.|++ +|..++++..-|.+.+|...
T Consensus 86 ~~~~~~e~ht---v~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHT---VVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeee---eccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 9987755432 2334566899999999 99999999999999999765
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.61 E-value=0.0021 Score=58.55 Aligned_cols=212 Identities=14% Similarity=0.089 Sum_probs=110.8
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-------cccCCceeEEEEee---CC----C
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNP---TN----D 130 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-------~~h~~~v~~~~~~~---~~----~ 130 (449)
....++...++|++++.|.-| ++|.|..+|.+.|.|++....+.... ......|+++.|.- .+ .
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 445677779999999999887 79999999999999998876665522 11345688898873 11 2
Q ss_pred CeEEEEeCCCeEEEEeCCC---CceeeeeecCCCCCCCCCcccceeEEE-EecC--------------------CCEEEE
Q 013086 131 GTVYAASSDGTVSCTDLET---GLALSLMNVNPNGWHGPRTWRMLYGMD-INPE--------------------KGVVLV 186 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~~ 186 (449)
-.+++|...|.+.+|.+.- +.....+..... .....+..+. ++.+ -..+++
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~-----~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATT-----NHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccc-----cCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 4688899999999998751 212111111100 0001122222 2111 123455
Q ss_pred EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC----CCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCC
Q 013086 187 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP----IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKR 260 (449)
Q Consensus 187 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~ 260 (449)
...+..++++.+.+.+...+.. ........+.+-+ ..+..|++-..+|.|++|.+...+....+... ....
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEcccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 5556789999988766433221 2211233344421 14667888889999999999876554444332 1222
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 261 VVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 261 ~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
.+....++++|..++..+.. .+.++.
T Consensus 308 ~~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred cccccEECCCCCEEEEeCcc-cEEEEE
Confidence 34456778889877766543 344443
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00044 Score=63.61 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCcee-EEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN-NIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
-.|.-+.|+|.- .++|++..+|.|.+..+. .+.+.++ ..|+..++ +++|.|+ |+.|++|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCCCc
Confidence 358889999998 589999999999999987 5556666 44777777 9999999 99999999999999999999887
Q ss_pred eeee
Q 013086 153 LSLM 156 (449)
Q Consensus 153 ~~~~ 156 (449)
+...
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 7653
No 364
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0051 Score=56.64 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=94.7
Q ss_pred cCCceeEEEEeeCCCCeEEEE-eC--C-CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCC
Q 013086 116 HSCIVNNIRFNPTNDGTVYAA-SS--D-GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNF 190 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~-~~--d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 190 (449)
-...+..-.|+|+ +..++-. -. . ..+.++++.+++.......... -..-+|+|||+.|+.. ..|
T Consensus 191 ~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~----------~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 191 SGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN----------NGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred cCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeeccCCc----------cCCccCCCCCCEEEEEECCC
Confidence 4456777789998 5544333 22 2 3599999999877666553222 3455799999877665 455
Q ss_pred C--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccCCCCCCceeecCCCCcEEEE
Q 013086 191 G--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSA 265 (449)
Q Consensus 191 g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 265 (449)
| .|+++|+....... .....+.-..=.|+| ++..|+..+. .| .|.+++...... ..+ ....... ..-
T Consensus 260 g~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri-T~~~~~~-~~p 331 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL-TFSGGGN-SNP 331 (425)
T ss_pred CCccEEEEcCCCCccee----cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEe-eccCCCC-cCc
Confidence 5 67778888766322 222222333667899 8887777664 34 466666654333 122 1211111 267
Q ss_pred EEcCCCCEEEEeeCC-Cc--EEEEeCCCCC
Q 013086 266 YFSPSGSKILTTSQD-NR--LRIWDSIFGN 292 (449)
Q Consensus 266 ~~~~~~~~l~~~~~d-g~--i~vwd~~~~~ 292 (449)
.|+|+|++|+..+.. |. |.+.|+.++.
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 899999999887743 44 5555554443
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0047 Score=60.48 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=89.0
Q ss_pred cCCCcEEEEeCcCCeeeEEEecccCCceeEEEEee----CCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCc
Q 013086 93 DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP----TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168 (449)
Q Consensus 93 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 168 (449)
.....++-.|++.++.+.........+|..++=.. -.....+.|-.+..|..||.+-.... .... .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~---~~k~Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS---QSKQYSS 576 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec---ccccccc
Confidence 34567888899998888877432223355543211 01334567777889999999854311 1110 0111223
Q ss_pred ccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 013086 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244 (449)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 244 (449)
.....|++-+. ..+||+|+.+|.|++||-- +..... .+...+.+|..|..+. +|.++++.+ +..|.+++.
T Consensus 577 ~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~-g~~AKT--~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTE-DGYIAVGSNKGDIRLYDRL-GKRAKT--ALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCceEEEecC-CceEEEEeCCCcEEeeccc-chhhhh--cCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 33466776554 4579999999999999943 332222 3345566999999999 999888766 567777775
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.49 E-value=0.018 Score=53.33 Aligned_cols=185 Identities=11% Similarity=0.044 Sum_probs=94.1
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
+.+....-....+.++|+| ++++.+ .||.-.|+......... .+.-...+|.+. + .+++-...++|.++.
T Consensus 26 k~lg~~~~~p~~ls~npng-r~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~-n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNG-RFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR-N-RYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTS-SEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS-S-EEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCC-CEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC-c-cEEEEECCCeEEEEE
Confidence 4444455567889999999 566664 47888888854433322 234467889884 4 566767688899963
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
--+......+..+. .+..+-. |.+|...+.+ .|.+||..+++.+.. ..-. +|..+.|++ +
T Consensus 96 n~~~~~~k~i~~~~----------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~---i~v~--~vk~V~Ws~-~ 155 (443)
T PF04053_consen 96 NFKNEVVKSIKLPF----------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRR---IDVS--AVKYVIWSD-D 155 (443)
T ss_dssp TTEE-TT-----SS-----------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEE---ESS---E-EEEEE-T-T
T ss_pred cCccccceEEcCCc----------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeE---EecC--CCcEEEEEC-C
Confidence 32222222332211 0222222 7777776654 899999999765532 2222 488999999 8
Q ss_pred CCEEEEEeCCCeEEEEEccCC------C--CCCceeecCC-CCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 227 PELLLSCGNDHFARIWDIRRL------E--AGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~------~--~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
+.+++..+. ..+.|++.... + ....+..... ...|.+..|..+ .++-.+.. .|+-
T Consensus 156 g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 156 GELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 888888875 46777775432 0 0012222222 567888888654 44433333 5544
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.038 Score=53.39 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=101.9
Q ss_pred ccEEEEEEeCCCCcEEEEEc-----CCC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-CeEEEE
Q 013086 74 RRVTCLEFHPTNNHILLSGD-----KKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-GTVSCT 145 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~-----~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~v~iw 145 (449)
..+.+.+++|+|++++++.. .|. .|.+++..... ..+..+ ...+.-.|+|+ +..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspD-G~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLD-ADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCC-CCceEEEecCcceEEEe
Confidence 46788999999966555542 243 45555543222 223222 24788999999 7777776533 223333
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE---EECCCCC-CccceEEe-ecCCCceEEE
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL---VDARTNS-RSGEAILI-HRKGSKVVGL 220 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~~~~~~~-~~~~~~v~~~ 220 (449)
+-.....+..+......... .....|..+.|+|||..++... +|.|++ -....+. .+...... ......+.++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 32221122222221111110 1122499999999999888766 467777 3333332 11111112 2222236889
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce-eecCCCCcEEEEEEcCCCCEEEEeeCCCcE
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 283 (449)
.|.+ ++.++ ++..++...+|.+.-....... ..-.....+..|+-+++ .++....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9998 66644 5555554455544322221111 11123556777777653 45555556533
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.069 Score=45.20 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=119.8
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.+|-+.+......+... ..+|...-...+... ..+-...+.++.|+|+ .+.|++......-.+|=...|+.+.++.
T Consensus 48 ~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiP 124 (316)
T COG3204 48 CAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIP 124 (316)
T ss_pred eEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEec
Confidence 33444443333444443 556654432211111 1344555999999999 7788887777777788777899998887
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE----Ee---ecCCCceEEEEEcCCCCCEE
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI----LI---HRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~---~~~~~~v~~~~~~~~~~~~l 230 (449)
+..-. ....+.+..++.+.++--.++.+.++.+.......... .. .......-.++|.| ....|
T Consensus 125 L~g~~--------DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l 195 (316)
T COG3204 125 LTGFS--------DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRL 195 (316)
T ss_pred ccccC--------ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceE
Confidence 64321 25667788888888888888888888776543221110 11 11133467899999 66666
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeec-CC-------CCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDL-PH-------KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 289 (449)
..+-+..-+.||.+......-..... .+ -..|.++.|++ .+.+|+.+.+++.+.-.|..
T Consensus 196 ~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 196 FVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 66666677777776532211111111 11 23577888988 56666667777777777764
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.30 E-value=0.1 Score=45.68 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=111.7
Q ss_pred EEEeCCCCcEEEEE--cCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC-CCceeee
Q 013086 79 LEFHPTNNHILLSG--DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSL 155 (449)
Q Consensus 79 ~~~~~~~~~~l~t~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~ 155 (449)
++++.+| ++++.. +--..|.|-|+...+....+. -.+ |....|.+++-|.+-+.||++.-..+. .|+....
T Consensus 100 ~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 100 FALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp EEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred eEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeec--CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 5677887 455443 334578888888877766653 222 222224334568888889999999887 4555422
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec----------CCCceEEEEEcCC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR----------KGSKVVGLHCNPI 225 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~ 225 (449)
... .+.. .....+..-++...+..++..+.+|.|+-.|+........ ..... ..+--.-+++++
T Consensus 174 ~t~---~F~~-~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPGG~Q~~A~~~- 247 (342)
T PF06433_consen 174 STK---VFDP-DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPGGWQLIAYHA- 247 (342)
T ss_dssp EEE---ESST-TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-SSS-EEEET-
T ss_pred ecc---ccCC-CCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCcceeeeeecc-
Confidence 211 1111 0011123334555666677788889999988876542211 01110 011233466776
Q ss_pred CCCEEEEEeC--------CC--eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC-EEEEe-eCCCcEEEEeCCCCCC
Q 013086 226 QPELLLSCGN--------DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTT-SQDNRLRIWDSIFGNL 293 (449)
Q Consensus 226 ~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~vwd~~~~~~ 293 (449)
..+.|.+.-. |+ .|.++|+.+.+. +..+....++.+|..+.+.+ +|++. ..++.|.+||..+|+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr---v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR---VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE---EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE---EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3433333221 11 477778876444 44343456788999999665 66544 4578999999999886
Q ss_pred C
Q 013086 294 D 294 (449)
Q Consensus 294 ~ 294 (449)
.
T Consensus 325 ~ 325 (342)
T PF06433_consen 325 V 325 (342)
T ss_dssp E
T ss_pred E
Confidence 4
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.00047 Score=55.40 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=72.0
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 229 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
.+..-+.+|.|+-++++.-+....-..+ +... . ..-.-+..+++|+.+|.|.+|...--..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~-~--~v~~~~~~~~vG~~dg~v~~~n~n~~g~--------------- 92 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-IDEG-Q--RVVTASAKLMVGTSDGAVYVFNWNLEGA--------------- 92 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-hhcc-e--eecccCceEEeecccceEEEecCCccch---------------
Confidence 3444567888888887643221111101 1111 1 1112356799999999999998751110
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeE
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSI 388 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i 388 (449)
+...+.....+ .......++--...+++..++.|+.|++...+.+.....|. |-|...++++++|+.|
T Consensus 93 ~~d~~~s~~e~---i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~---------~~~~e~~ivv~sd~~i 160 (238)
T KOG2444|consen 93 HSDRVCSGEES---IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN---------FESGEELIVVGSDEFL 160 (238)
T ss_pred HHHhhhccccc---ceeccccccccceeEEeccCCceeeeccccCceeeeecccc---------CCCcceeEEecCCceE
Confidence 00000000000 11111112221122368899999999999888877665554 2333344444556666
Q ss_pred EEEcCCCchhh
Q 013086 389 FIWRPKEKSEL 399 (449)
Q Consensus 389 ~iw~~~~~~~~ 399 (449)
.+|++.....+
T Consensus 161 ~~a~~S~d~~~ 171 (238)
T KOG2444|consen 161 KIADTSHDRVL 171 (238)
T ss_pred Eeeccccchhh
Confidence 66665555443
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.27 E-value=0.036 Score=39.65 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=65.3
Q ss_pred eeEEEEec---CC-CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCC
Q 013086 172 LYGMDINP---EK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 247 (449)
Q Consensus 172 i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 247 (449)
|.++++.. +| +.|++|+.|..|++|+-... ..... ....|++++-.. ...++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-----~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-----VAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-----EEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCc--
Confidence 45555544 32 58999999999999986541 11222 233688888775 4779999999999999863
Q ss_pred CCCCceeecCCCCcEEEEEEcC-CC---CEEEEeeCCCcEE
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSP-SG---SKILTTSQDNRLR 284 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~ 284 (449)
....+ ......++++.+.. ++ ..|++|-.+|.|-
T Consensus 72 --~RlWR-iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 --QRLWR-IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --ceeee-eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 23444577776654 22 3688888888764
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.26 E-value=0.092 Score=44.32 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=110.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 75 RVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
-...+.|..+| .++-+.+.-| .|+.+|+.+++......-...---..++... +....-.=.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 35578887777 6777776655 7999999998766554322222233444442 33444445689999999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC---CceEEEEEcCCCCCE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPEL 229 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~ 229 (449)
+..+....++ ..++ .++..|+.+.....++++|..+.+....+ .....+ ..++.+.+. ++.+
T Consensus 123 ~~~~~y~~EG----------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-~V~~~g~pv~~LNELE~i--~G~I 187 (264)
T PF05096_consen 123 IGTFPYPGEG----------WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-QVTDNGRPVSNLNELEYI--NGKI 187 (264)
T ss_dssp EEEEE-SSS------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-E-EETTEE---EEEEEEE--TTEE
T ss_pred EEEEecCCcc----------eEEE--cCCCEEEEECCccceEEECCcccceEEEE-EEEECCEECCCcEeEEEE--cCEE
Confidence 8888776543 3444 57888888888999999999887655433 222222 245667776 5555
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceee-------------cCCCCcEEEEEEcCCCCEEEEee
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCD-------------LPHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
.|=.-....|...|..++.....+.. .....-.+.|++.|....|.+.+
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555555666666665443221110 01245678999999666555544
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.062 Score=51.91 Aligned_cols=190 Identities=12% Similarity=-0.004 Sum_probs=103.0
Q ss_pred cEEEEEcCCC------cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC------CeEEEEeCCCCceee
Q 013086 87 HILLSGDKKG------QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTDLETGLALS 154 (449)
Q Consensus 87 ~~l~t~~~d~------~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 154 (449)
.+++.|+.++ .+..+|..+..............-.+++... +...++|+.| .++..||..+++...
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceec
Confidence 5777777763 6778888876433332222334445555554 6778888888 357788888777544
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-----eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
....... +....+ -.-+|...++|+.|| .+..||..+.+..... .... ..........++.+
T Consensus 364 ~a~M~~~-----R~~~~v----~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~---~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 364 VAPMNTK-----RSDFGV----AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLT---RRSGHGVAVLGGKL 430 (571)
T ss_pred cCCccCc-----ccccee----EEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCc---ceeeeEEEEECCEE
Confidence 2222111 110011 123677888888886 5778888876543211 0111 12222222227788
Q ss_pred EEEEeCCC------eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCc-----EEEEeCCCCCC
Q 013086 230 LLSCGNDH------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-----LRIWDSIFGNL 293 (449)
Q Consensus 230 l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 293 (449)
.++|+.++ ++..||..+..-...-......... .++.. ++.+.+.|+.|+. +..||..+.+.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 88888654 5677887654321111110111111 12222 6777888887763 66677766543
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.0013 Score=36.88 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.1
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
..|...|.++.|.+. ...+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 468889999999998 78999999999999996
No 375
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.17 E-value=0.21 Score=49.84 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=123.3
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe----------------cCCCEEEEEcCCCeE
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----------------PEKGVVLVADNFGFL 193 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~l~~~~~dg~i 193 (449)
+..++.++.++.|.-.|..+|+.+..+............ .....+++. ..+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 567888888999999999999998887654332110000 001122221 134578889999999
Q ss_pred EEEECCCCCCccceEE-----eecCCCce----EEEEEcC-CCCCEEEEEeC----------CCeEEEEEccCCCCCCce
Q 013086 194 YLVDARTNSRSGEAIL-----IHRKGSKV----VGLHCNP-IQPELLLSCGN----------DHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~-----~~~~~~~v----~~~~~~~-~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 253 (449)
.-.|.++++.....-. ....-... ..+.-.| ..+..+++|+. +|.|+-+|.++++..-..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999886632110 00000000 0111111 02345666642 688999999987764433
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcce
Q 013086 254 CDLPHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 332 (449)
Q Consensus 254 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 332 (449)
... .... ... -+.+.....++.+. ...-+|.+++...-+..+.. ..+... .+.
T Consensus 353 ~~g-~p~~-~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~-------------pd~~g~---------~r~ 406 (764)
T TIGR03074 353 DPG-NPDP-TAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT-------------PDQWGG---------DRT 406 (764)
T ss_pred ecC-CCCc-ccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc-------------ccccCC---------ccc
Confidence 221 1100 000 01233222222111 22233333322110000000 000000 000
Q ss_pred ecccCCCCCCcceEEEECCCceEEEEEecCcccee-------ceeeecCC-CCc---EEeecC-CCeEEEEcCCCchhhh
Q 013086 333 ISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI-------SPVNKLHP-RDD---VLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 333 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-------~~v~~~~~-~~~---~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
.. .....+.|.-.|..||+....++..+++.. -.+..+.. +|+ .++.++ +|.+++.|.++|+.+.
T Consensus 407 ~~---~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 407 PA---DEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred cC---cccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 00 112235577889999999988875331110 01112322 553 677788 9999999999999887
Q ss_pred hhhc
Q 013086 401 EQKE 404 (449)
Q Consensus 401 ~~~~ 404 (449)
..++
T Consensus 484 ~~~e 487 (764)
T TIGR03074 484 PVEE 487 (764)
T ss_pred ecee
Confidence 6554
No 376
>PHA02713 hypothetical protein; Provisional
Probab=97.11 E-value=0.024 Score=54.80 Aligned_cols=189 Identities=7% Similarity=0.026 Sum_probs=93.4
Q ss_pred cEEEEEcCC------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC-----eEEEEeCCCCceeee
Q 013086 87 HILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLALSL 155 (449)
Q Consensus 87 ~~l~t~~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~ 155 (449)
.+++.|+.+ ..+..||..+........-.....-.+++. -+ +...+.||.++ ++..||..+......
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-ID-DTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-EC-CEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 677777753 246678876654321110001111112222 23 66777777653 478899887655432
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----------------------CeEEEEECCCCCCccceEEeec
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----------------------GFLYLVDARTNSRSGEAILIHR 212 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------g~i~i~d~~~~~~~~~~~~~~~ 212 (449)
-..+... . ....+ .-++...+.|+.+ ..+..||..+.+..... ....
T Consensus 383 ~~mp~~r-----~--~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~ 452 (557)
T PHA02713 383 PDMPIAL-----S--SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWT 452 (557)
T ss_pred CCCCccc-----c--cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCc
Confidence 2211110 0 01111 2357777777654 24777888775432111 1111
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCC------CeEEEEEccC-CCCCCceeecC-CCCcEEEEEEcCCCCEEEEeeCCC--c
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRR-LEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDN--R 282 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg--~ 282 (449)
.... .+++.. ++.+.+.|+.+ ..+..||..+ .+= ..+..+. .......+.+ +++..++|+.++ .
T Consensus 453 ~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 453 GTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred cccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 1001 122222 56777777754 2467888875 221 1111121 1122222333 788888998888 6
Q ss_pred EEEEeCCCCCC
Q 013086 283 LRIWDSIFGNL 293 (449)
Q Consensus 283 i~vwd~~~~~~ 293 (449)
+..||..+.+-
T Consensus 527 ~e~yd~~~~~W 537 (557)
T PHA02713 527 QDTFNVYTYEW 537 (557)
T ss_pred hhhcCcccccc
Confidence 77777766553
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0011 Score=53.40 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=76.8
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeE-EEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 133 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 133 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
+..-+.||.|+-++++..+....... .+.+ .....-+..+++|+.+|.|++|..............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~------------~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s- 99 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER------------FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS- 99 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh------------hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhc-
Confidence 44446678888887765433221110 0111 112223567999999999999988743222211111
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCC-CcEEEEEEcCCCCEEEEe--eCCCcEEEEe
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK-RVVNSAYFSPSGSKILTT--SQDNRLRIWD 287 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~vwd 287 (449)
. ...|.++--.-.++.+..++..+|.|+.|++.-. +.+... .|. .++.....+..++.++.+ |.|..++.|+
T Consensus 100 ~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 100 G-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred c-cccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 1 1133333323225668889999999999998642 223222 344 344444444555555555 5666666666
Q ss_pred CC
Q 013086 288 SI 289 (449)
Q Consensus 288 ~~ 289 (449)
+.
T Consensus 176 ve 177 (238)
T KOG2444|consen 176 VE 177 (238)
T ss_pred hh
Confidence 64
No 378
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.07 E-value=0.18 Score=45.79 Aligned_cols=268 Identities=11% Similarity=0.079 Sum_probs=123.0
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc----------------CCceeEEEEeeCCCCeEEEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH----------------SCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~ 136 (449)
...+....|||+|. .++-.. ++.|.+++..++........+- -+.-..+-|+|+ +++|+..
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEE
T ss_pred ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEE
Confidence 56788899999994 555544 6789999987774443332220 122367889999 7777776
Q ss_pred eC-CCeEEEEeCC---CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe--
Q 013086 137 SS-DGTVSCTDLE---TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-- 210 (449)
Q Consensus 137 ~~-dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 210 (449)
.. +..|..+.+. .... ....+..+.+-.-|.-. ..-.+.++|+.+++... +...
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~---------------~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~~~~-~~~~~~ 178 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS---------------QYPEVESIRYPKAGDPN----PRVSLFVVDLASGKTTE-LDPPNS 178 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE---------------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCCE-E---HH
T ss_pred EECCcCCceEEeeccCCccc---------------cCCcccccccCCCCCcC----CceEEEEEECCCCcEEE-eeeccc
Confidence 54 3334433321 1110 00002222221111110 01246678887776531 1111
Q ss_pred -ecCCCceEEEEEcCCCCCEEEEE--eCC---CeEEEEEccCCCCCCceeecCCCCc---EEEEEEc-CCCCE-EEEeeC
Q 013086 211 -HRKGSKVVGLHCNPIQPELLLSC--GND---HFARIWDIRRLEAGSSLCDLPHKRV---VNSAYFS-PSGSK-ILTTSQ 279 (449)
Q Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~-l~~~~~ 279 (449)
......+..+.|.+ ++..|+.. ..+ ..+.++|..++......... .... -....|. +++.. |.....
T Consensus 179 ~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~ 256 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISER 256 (353)
T ss_dssp HHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEET
T ss_pred cCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEc
Confidence 23344688999999 77633333 222 25667777664442222211 2222 2245554 65544 444446
Q ss_pred CCc--EEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEE
Q 013086 280 DNR--LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 357 (449)
Q Consensus 280 dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~ 357 (449)
+|. |.+++...+... .+....+.-. -.+.|++......+...+ .......|..-++..+..+.
T Consensus 257 ~G~~hly~~~~~~~~~~-----~lT~G~~~V~---~i~~~d~~~~~iyf~a~~-------~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPR-----QLTSGDWEVT---SILGWDEDNNRIYFTANG-------DNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp TSSEEEEEEETTSSEEE-----ESS-SSS-EE---EEEEEECTSSEEEEEESS-------GGTTSBEEEEEETTETTEEE
T ss_pred CCCcEEEEEccccccee-----ccccCceeec---ccceEcCCCCEEEEEecC-------CCCCceEEEEEEeCCCCCeE
Confidence 665 445555444311 1111111110 024555552211111111 11233455555666234444
Q ss_pred EEecCccceeceeeecCCCCcEEee
Q 013086 358 EVMDPNITTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 358 ~~~~~~~~~v~~v~~~~~~~~~l~s 382 (449)
.+....... ..+ .|||++++++-
T Consensus 322 ~LT~~~~~~-~~~-~~Spdg~y~v~ 344 (353)
T PF00930_consen 322 CLTCEDGDH-YSA-SFSPDGKYYVD 344 (353)
T ss_dssp ESSTTSSTT-EEE-EE-TTSSEEEE
T ss_pred eccCCCCCc-eEE-EECCCCCEEEE
Confidence 554332122 244 79999998875
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.19 Score=44.14 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=114.6
Q ss_pred EEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC
Q 013086 122 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 201 (449)
Q Consensus 122 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 201 (449)
...|.++.+.++.+--..+.|.-|+..+++... +..+.. +.++..-..+..|+++.. .+.+++..++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~----------~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~ 95 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGG----------FSSGALIDAGGRLIACEH--GVRLLDPDTG 95 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCC----------cccceeecCCCeEEEEcc--ccEEEeccCC
Confidence 345667634455565667888888887664432 222211 344444444444554443 2444554433
Q ss_pred CCccceEEe--ecCCCceEEEEEcCCCCCEEEEEeC-----------CCeEEEEEccCCCCCCceeec-CCCCcEEEEEE
Q 013086 202 SRSGEAILI--HRKGSKVVGLHCNPIQPELLLSCGN-----------DHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYF 267 (449)
Q Consensus 202 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~ 267 (449)
......... .......+.+...| ++.+.++... -|.|+.+|.. ....... .+-..-+.|+|
T Consensus 96 ~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 96 GKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecCcEEecCceEE
Confidence 321111010 11123567788888 7776655433 1335555531 1222222 33445678999
Q ss_pred cCCCCEEEEeeC-CCcEEEEeCCC--CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCC-c
Q 013086 268 SPSGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL-H 343 (449)
Q Consensus 268 ~~~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d-~ 343 (449)
|||++.|+.+.. .+.|.-|++.. +..... .......... -.|+ ...+-..|.+.. ++... +
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~---------G~PD--G~~vDadG~lw~---~a~~~g~ 235 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEP---------GLPD--GMAVDADGNLWV---AAVWGGG 235 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCC---------CCCC--ceEEeCCCCEEE---ecccCCc
Confidence 999988887765 47888887753 222111 0000000000 0111 223333355553 22233 4
Q ss_pred ceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 344 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
.|.+|+.. |+++..+..+. ..+.+++.-.|+.+.|...
T Consensus 236 ~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 236 RVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred eEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEE
Confidence 79999987 99999888775 4444442345555544443
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.17 Score=42.71 Aligned_cols=177 Identities=11% Similarity=0.008 Sum_probs=102.1
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe-EEEEeCCCCceeeeeec
Q 013086 80 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT-VSCTDLETGLALSLMNV 158 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~ 158 (449)
...++|...+++.+.+|.+.- .. .-...-..|+|+|....-++.+-.-|+ ..++|..+.+....+..
T Consensus 42 f~~~dgs~g~a~~~eaGk~v~----------~~--~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 42 FDARDGSFGAATLSEAGKIVF----------AT--ALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred eeccCCceeEEEEccCCceee----------ee--ecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 335667555666666665432 11 122334567788874555666655554 57889988877766654
Q ss_pred CCCCCCCCCcccceeEEEEecCCCEEEEEcC-----CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 159 NPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
....+. .-.=.|+|||.+|.+.-. .|.|-+||.+..-.. .-....++--...+.+.+ +++.++.+
T Consensus 110 ~~~RHf-------yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr--vgE~~t~GiGpHev~lm~-DGrtlvva 179 (366)
T COG3490 110 QEGRHF-------YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR--VGEFSTHGIGPHEVTLMA-DGRTLVVA 179 (366)
T ss_pred ccCcee-------ecccccCCCCcEEEeecCCCCCCCceEEEEecccccce--ecccccCCcCcceeEEec-CCcEEEEe
Confidence 433210 112348999999988643 479999999854322 223344444567888998 99988876
Q ss_pred eC------------------CCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcCCCCEEEEee
Q 013086 234 GN------------------DHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 234 ~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
.. .-++.+.|..+++........ .+.-.|..++..+||..++.+-
T Consensus 180 nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 180 NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 42 112333443333332222111 2344577777777777665543
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0036 Score=61.59 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
-.++.|+..|.+...|+...-........-.++|++++|+.+ +..++.|-.+|.|.+||+..++..+.+.....+..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeecCCccce-
Confidence 368888888999998887653322232335679999999999 999999999999999999999998888766554322
Q ss_pred CcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 167 RTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
+..+.+..++..++++...|.+
T Consensus 178 -----vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 178 -----VIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred -----EEEEEEeCCCcEEEEccCCCce
Confidence 5666666777788888888873
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.22 Score=43.76 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=114.1
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeec
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 158 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 158 (449)
-.|.++...++.+--..+.|.-|+..++...... +...+.++..... +..|+++.. -+.+++.+++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4567777567777777889999998866544433 3344455555544 556666543 367777766665333322
Q ss_pred CCCCCCCCCcccceeEEEEecCCCEEEEEcC-----------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 159 NPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
.... ......+.....|+|.+.+.... -|.++.+|.. +... . ....+-...+.|+|+| ++
T Consensus 104 ~~~~----~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~-~--l~~~~~~~~NGla~Sp-Dg 174 (307)
T COG3386 104 PEDG----LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVV-R--LLDDDLTIPNGLAFSP-DG 174 (307)
T ss_pred ccCC----CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEE-E--eecCcEEecCceEECC-CC
Confidence 2111 11133667788888886666433 1345555542 2211 1 1112122467899999 77
Q ss_pred CEEEEEe-CCCeEEEEEccC--CCCCCc--eeec-CCCCcEEEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCC
Q 013086 228 ELLLSCG-NDHFARIWDIRR--LEAGSS--LCDL-PHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDSIFGNL 293 (449)
Q Consensus 228 ~~l~~~~-~dg~i~iwd~~~--~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~ 293 (449)
+.|..+. ..+.|.-|++.. ...... .... ...+..-.++...+|.+.+++..+| .|.+|+.. |++
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 6555554 457888887752 111111 1111 2345556677777888776555444 89999887 655
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.014 Score=57.97 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=79.8
Q ss_pred eeEEEEecCCCEEEEE--cCCCeEEEEECCCCCCcc--------ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 172 LYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSG--------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
+..+...+|+...++. ..+-.|..||++...... .............++.|+|.-....++...|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 5666677777655554 334489999997643211 111122333457788999955666777788999999
Q ss_pred EEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
..+... ......+.....+++++|+|.|+.++.|-..|++.-|...
T Consensus 183 ~~~~~~--~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 183 KSTKQL--AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhh--hhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 887532 2233334566788999999999999999999999988764
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0056 Score=60.31 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCC-
Q 013086 180 EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH- 258 (449)
Q Consensus 180 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 258 (449)
.+..+++|+..|.+...|....-. .........++|++++|+. ++.+++.|-.+|.|.+||+...+..+.+...++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 456788899999999988877422 1223444566899999999 999999999999999999987666555544322
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 259 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 259 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
...|..+.+..++..++++...|. +|.+.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 223334445556667888877776 56653
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.90 E-value=0.19 Score=45.45 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=86.4
Q ss_pred eCCCCcEEEEEc--C----CCcEEEEeCcCCeeeEEEeccc--CCceeEEEEeeCCCCeEEEEe----------------
Q 013086 82 HPTNNHILLSGD--K----KGQVGVWDFYKVSEKIVYGNIH--SCIVNNIRFNPTNDGTVYAAS---------------- 137 (449)
Q Consensus 82 ~~~~~~~l~t~~--~----d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~---------------- 137 (449)
-|+| .+++++- . -|-+.+.|-++........... ..--.++-|.|. .+.++|..
T Consensus 138 lp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTH
T ss_pred cCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHh
Confidence 4677 5776652 2 2457788877766655553322 233466677777 77777764
Q ss_pred ----CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEE-cCCCeEEEEEC-CCCCCcc-ceE
Q 013086 138 ----SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVA-DNFGFLYLVDA-RTNSRSG-EAI 208 (449)
Q Consensus 138 ----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~~dg~i~i~d~-~~~~~~~-~~~ 208 (449)
...++.+||+.+.+.++++.+..+. .....+.|..+ ..+=+++ .-.++|..|-- ..+.... ..+
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEG-------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTE-------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCC-------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 2468999999999999999876543 12555666544 4433333 34455555533 3222111 111
Q ss_pred EeecC-----------------CCceEEEEEcCCCCCEE-EEEeCCCeEEEEEccCCCCCCceeec--C-----------
Q 013086 209 LIHRK-----------------GSKVVGLHCNPIQPELL-LSCGNDHFARIWDIRRLEAGSSLCDL--P----------- 257 (449)
Q Consensus 209 ~~~~~-----------------~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~--~----------- 257 (449)
..... ..-|+.|.+|. +.++| +++-..|.|+.||+......+..... +
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v 367 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVV 367 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccc
Confidence 11100 22478899998 66655 55557999999999876554433221 0
Q ss_pred ----CCCcEEEEEEcCCCCEEEEee
Q 013086 258 ----HKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 258 ----~~~~v~~~~~~~~~~~l~~~~ 278 (449)
-.+....|..|.||+.|.+.+
T Consensus 368 ~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 368 KGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ------S----EEE-TTSSEEEEE-
T ss_pred cccccCCCCCeEEEccCCeEEEEEe
Confidence 122346677888888876654
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.90 E-value=0.16 Score=49.22 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCeEEEEeCC------CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC------CeEEEEE
Q 013086 130 DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVD 197 (449)
Q Consensus 130 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d 197 (449)
+.+++.|+.+ ..+..+|..++........+... .-.+++. -++...++|+.+ ..+..||
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r--------~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR--------CRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc--------ccccEEE-ECCEEEEEccccCCCcccceEEEec
Confidence 5566777766 36788888887554443332211 1223333 245777888888 3778899
Q ss_pred CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC-----eEEEEEccCCCCCCceeecCCCCcEEEEEEc-CCC
Q 013086 198 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKRVVNSAYFS-PSG 271 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 271 (449)
...++... ........ .-..++.. ++.+.++|+.|| ++..||..+.+-...- .......+.... -+|
T Consensus 356 ~~~~~W~~-~a~M~~~R-~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTP-VAPMNTKR-SDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceec-cCCccCcc-ccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccC---CCCcceeeeEEEEECC
Confidence 88876432 11111111 11122222 788999999987 4777887653321111 111122222222 278
Q ss_pred CEEEEeeCCC------cEEEEeCCCCCC
Q 013086 272 SKILTTSQDN------RLRIWDSIFGNL 293 (449)
Q Consensus 272 ~~l~~~~~dg------~i~vwd~~~~~~ 293 (449)
...++|+.++ ++..||..++..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCce
Confidence 8888888654 466788776654
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.85 E-value=0.33 Score=43.54 Aligned_cols=253 Identities=17% Similarity=0.091 Sum_probs=106.7
Q ss_pred eCcCCeeeEEEecc----cCCceeEEEEeeCCCCeEEEEeCCC--eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEE
Q 013086 102 DFYKVSEKIVYGNI----HSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGM 175 (449)
Q Consensus 102 d~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (449)
|..++..+..+... |..--+.=+|.+++..+|+++..|| .+.+.|+.+++..+........ ....
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~---------~~g~ 86 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN---------TFGG 86 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----------TTT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC---------ccce
Confidence 45556555555321 1112223356777334555554454 5777788888776655433211 2235
Q ss_pred EEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC-CCCCEEEEEeC-------------------
Q 013086 176 DINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP-IQPELLLSCGN------------------- 235 (449)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~------------------- 235 (449)
.++++++.++.......|.-.|+.+.+.. .+...... .+-...|.. .++..++..-.
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEER-VVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EE-EEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEE-EEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 56788888776666678899999987643 22222222 343455532 14444332211
Q ss_pred ---CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeC---CCc-EEEEeCCCCCCCCCCccceecCCCC
Q 013086 236 ---DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQ---DNR-LRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 236 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---dg~-i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
...|.-.|+.+++. ...+.....+..+.|+| +..+|+.|-+ +.. -|||-+++.... ...+..+.
T Consensus 164 a~p~~~i~~idl~tG~~---~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~-- 235 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGER---KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRM-- 235 (386)
T ss_dssp C---EEEEEEETTT--E---EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS-----
T ss_pred hCCCceEEEEECCCCce---eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCC--
Confidence 12355556655333 22223556778899999 5555555543 221 356655432210 01111111
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEee-cCC
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS-GSS 385 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s-~sd 385 (449)
.....----|.|++....+ .+ +. .+..+..|.-+|..+++.......+. .... .-++||+++|- |+|
T Consensus 236 ~~e~~gHEfw~~DG~~i~y--~~-~~----~~~~~~~i~~~d~~t~~~~~~~~~p~---~~H~-~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 236 EGESVGHEFWVPDGSTIWY--DS-YT----PGGQDFWIAGYDPDTGERRRLMEMPW---CSHF-MSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTEEEEEEEE-TTSS-EEE--EE-EE----TTT--EEEEEE-TTT--EEEEEEE-S---EEEE-EE-TTSSEEEEEE--
T ss_pred CCcccccccccCCCCEEEE--Ee-ec----CCCCceEEEeeCCCCCCceEEEeCCc---eeee-EEcCCCCEEEecCCC
Confidence 0111112467887432222 11 11 35667778888998887644333221 1122 35788888876 444
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.79 E-value=0.0075 Score=35.76 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 258 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
....|.+++|+|...+||.++.+|.|.+|.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 4567999999999999999999999999998
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.78 E-value=0.48 Score=44.42 Aligned_cols=143 Identities=10% Similarity=0.125 Sum_probs=83.9
Q ss_pred ccCccEEEEEEeCCC----CcEEEEEcCCCcEEEEeCcC-----CeeeEEEeccc----CCceeEEEEeeCCCCeEEEEe
Q 013086 71 YHSRRVTCLEFHPTN----NHILLSGDKKGQVGVWDFYK-----VSEKIVYGNIH----SCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~----~~~l~t~~~d~~i~vwd~~~-----~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~ 137 (449)
|.-+.|..+.|.|-+ +.+||.- ....|.||.+.. .+......... .---..+.|+|. ...|++-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEe
Confidence 444669999999863 4566665 467899998852 12222111111 112356789998 77776666
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCcc-ceEEeecCCC
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSG-EAILIHRKGS 215 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~~~ 215 (449)
....-.++++..............+ .|.|.+|..||+.|+++-. .=.-++||-....... .......-++
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G--------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~ 203 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSG--------LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGG 203 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCc--------eEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCC
Confidence 5544456666654444333333332 3999999999998877644 3477899876543211 1112333344
Q ss_pred ceEEEEEc
Q 013086 216 KVVGLHCN 223 (449)
Q Consensus 216 ~v~~~~~~ 223 (449)
.|.++.-.
T Consensus 204 ~Icsi~AT 211 (671)
T PF15390_consen 204 YICSIEAT 211 (671)
T ss_pred ceEEEEEe
Confidence 66666554
No 390
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.28 Score=41.59 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=100.5
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
-..-+..+.++ +++++.+..+.-+++.|+.+.........-... -..-.|.-.|++..++..+.-+.+
T Consensus 85 ~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---------gyaygv~vsGn~aYVadlddgfLi 152 (370)
T COG5276 85 ARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---------GYAYGVYVSGNYAYVADLDDGFLI 152 (370)
T ss_pred hhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCC---------ceEEEEEecCCEEEEeeccCcEEE
Confidence 45567788887 558888888888999999876543333211110 122234456889999987777888
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
.|+.+...+.-.-...........++.+ +++...+..|+-+.+.|+.+......+........+.++..+++.-+++
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence 9998876553222222233334566664 5777777789999999998766655554444444788888887766665
Q ss_pred EeeCCCcEEEEeCCC
Q 013086 276 TTSQDNRLRIWDSIF 290 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~ 290 (449)
... .-+.+-|..+
T Consensus 230 vy~--egvlivd~s~ 242 (370)
T COG5276 230 VYD--EGVLIVDVSG 242 (370)
T ss_pred Ecc--cceEEEecCC
Confidence 543 2355555543
No 391
>PHA02713 hypothetical protein; Provisional
Probab=96.69 E-value=0.12 Score=50.10 Aligned_cols=52 Identities=6% Similarity=-0.117 Sum_probs=30.6
Q ss_pred ceEEEECCC-ce--EEEEEecCccceeceeeecCCCCcEEeecC-CC--eEEEEcCCCchhh
Q 013086 344 PIDFIDITT-GQ--LVAEVMDPNITTISPVNKLHPRDDVLASGS-SR--SIFIWRPKEKSEL 399 (449)
Q Consensus 344 ~i~iwd~~~-~~--~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg--~i~iw~~~~~~~~ 399 (449)
.+..||..+ .+ .+..+.... ....+ ..-++++.++|+ || .+-.||+.+.+=.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~--~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRL--SALHT--ILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eEEEecCCCCCCeeEccccCccc--cccee--EEECCEEEEEeeecceeehhhcCccccccc
Confidence 467899886 33 333332222 11121 223778888888 87 7778888776533
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.11 Score=43.71 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=104.2
Q ss_pred EEeCCCCcEEEEEcC-----CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----------------
Q 013086 80 EFHPTNNHILLSGDK-----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------------- 138 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~-----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------------- 138 (449)
.||+|| ++|...-. -|.|=|||....-...--...|.-....+.|.+| +..++.+..
T Consensus 120 vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEeCCceecccccCccccchh
Confidence 689999 55554332 2679999998654333333678888899999999 877777642
Q ss_pred --CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe----EEEEEC-CCCCCccceEEee
Q 013086 139 --DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF----LYLVDA-RTNSRSGEAILIH 211 (449)
Q Consensus 139 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----i~i~d~-~~~~~~~~~~~~~ 211 (449)
.-++.+.|..+|..+....++.. .....+..++..+++..++.+-..|. --+.-. ..++.+ +.+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~-----l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l-~~~~~p 271 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS-----LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL-EFLDLP 271 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh-----hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC-cccCCC
Confidence 12344455555555544443311 11123777888888776655432221 001111 111111 111111
Q ss_pred -----cCCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 212 -----RKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 212 -----~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
.....|-+++.+. +..+++..+ ......+||..++........ .....++ +...-+++.+.+|.+.+
T Consensus 272 ee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva--~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 272 EEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVA--AAKGGFAVSSGQGRIIF 344 (366)
T ss_pred HHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccce--eccCceEEecCCceEEe
Confidence 0112577888887 444444444 445677999987554222211 1122222 23444667777888988
Q ss_pred EeC
Q 013086 286 WDS 288 (449)
Q Consensus 286 wd~ 288 (449)
+.-
T Consensus 345 ~s~ 347 (366)
T COG3490 345 YSR 347 (366)
T ss_pred ccc
Confidence 843
No 393
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.66 E-value=0.55 Score=43.57 Aligned_cols=182 Identities=14% Similarity=0.239 Sum_probs=91.6
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe------cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
.+.|.++.|+.+. . |+.-..||.++++|+.... ...+. ......+....+..+ | ++.-..++.+.+..
T Consensus 80 ~~~iv~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~-G--ivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 80 SGRIVGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN-G--IVVLTGNNRFYVVN 153 (410)
T ss_pred CCCEEEEEECCCC-e-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC-C--EEEECCCCeEEEEe
Confidence 3789999998875 4 5555679999999987544 11110 011122222233222 3 33333344444443
Q ss_pred CCCCc-eeeeeecCCCCCCCCCcccceeE-EEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 147 LETGL-ALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 147 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
-.... ....+...+.............. ..++.+....+....++.+.+.+-..... . ...+++..+++||
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i-~~~~~i~~iavSp 226 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------I-DSDGPIIKIAVSP 226 (410)
T ss_pred CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------c-cCCCCeEEEEECC
Confidence 22211 11111100010000000001111 23445555555656666777555433211 1 1123799999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcCCC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSG 271 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 271 (449)
+++++|.-..+|.+.+.+..-.+ .+..+ ........|.|.-+.
T Consensus 227 -ng~~iAl~t~~g~l~v~ssDf~~---~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 227 -NGKFIALFTDSGNLWVVSSDFSE---KLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred -CCCEEEEEECCCCEEEEECcccc---eeEEeecCcCCCCcEEEEECCC
Confidence 99999999999999998764322 22222 233456677775443
No 394
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.64 E-value=0.85 Score=45.47 Aligned_cols=296 Identities=12% Similarity=0.045 Sum_probs=143.6
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC--C---CeEEEEeCCCeEEEEeC-CCCceeeeeecCCCC
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--D---GTVYAASSDGTVSCTDL-ETGLALSLMNVNPNG 162 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~--~---~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~ 162 (449)
++.++.++.+...++................|.|+.++|-+ . ++++.|..+..+.+.-. .....+......
T Consensus 502 VvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~--- 578 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS--- 578 (1096)
T ss_pred EEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC---
Confidence 44444455566666655543333323456789999999752 2 37888887766555433 333332222111
Q ss_pred CCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC--CCCCCccceEEeecCCCceEEEEEcCCCC-------------
Q 013086 163 WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA--RTNSRSGEAILIHRKGSKVVGLHCNPIQP------------- 227 (449)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------- 227 (449)
....+..|.-..+-.+..+|.++..||.+..+-+ .++...... ..+-...++.--.|+....
T Consensus 579 --~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi 655 (1096)
T KOG1897|consen 579 --GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRTAVFALSDRPTVI 655 (1096)
T ss_pred --CCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCceEEEEeCCCCEEE
Confidence 1122233666667777889999999998876644 333211100 0000001121112221111
Q ss_pred -----------------------------CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee
Q 013086 228 -----------------------------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 228 -----------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
..++++. .+.+.+.-+...+..... ...-......+++.+....+++.+
T Consensus 656 Y~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~ir-tvpl~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 656 YSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIR-TVPLGESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred EecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhccee-eecCCCChhheEecccceEEEEEe
Confidence 1222222 233444433322221111 122334455677766444444443
Q ss_pred CC--------------CcEEEEeCCCCCCCCCCccceecCCCCccccc---eeeeeccCCCCCceEEEcceecccCCCCC
Q 013086 279 QD--------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP---FRAEWDPKDPSESLAVIGRYISENYNGAA 341 (449)
Q Consensus 279 ~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (449)
.. ..++++|-.+-+. .+.+.+...... +++.|..+. +..+.+--.++.+.-....
T Consensus 734 ~r~e~~~~~~~ee~~~s~l~vlD~nTf~v-------l~~hef~~~E~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~ 805 (1096)
T KOG1897|consen 734 NRIESSAEYYGEEYEVSFLRVLDQNTFEV-------LSSHEFERNETALSIISCKFTDDP-NTYYVVGTGLVYPDENEPV 805 (1096)
T ss_pred cccccchhhcCCcceEEEEEEecCCceeE-------EeeccccccceeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcc
Confidence 21 1355666554433 344444443333 344466553 3333332222222224456
Q ss_pred CcceEEEECCCceEEEEEecC-ccceeceeeecCCCCcEEeecCCCeEEEEcCCCchhhhhhh
Q 013086 342 LHPIDFIDITTGQLVAEVMDP-NITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 342 d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~~~~~~~ 403 (449)
.|.|.+|....+..+.....+ -.+.+.++..| +|++||.-+ ..|++|++.+++.++...
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~In-~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAGIN-QSVRLYEWTTERELRIEC 865 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEecC-cEEEEEEccccceehhhh
Confidence 688999988774433333222 12445555233 577666544 689999998886665543
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.57 E-value=0.0084 Score=35.54 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=30.3
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
....|..+.|+|. .++||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999 999999999999999998 4443
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.55 E-value=0.7 Score=46.01 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=115.9
Q ss_pred cEEEEEEeCCCCcEEEEEc----------CCCcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 75 RVTCLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~----------~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.|.++.|..|.+.+++.|. ..|.|.|+.......+... ...-.+.+.++.--. ++++|.- ...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn--gkllA~I--n~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN--GKLLAGI--NQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC--CeEEEec--CcEEE
Confidence 3455568777446777774 3477888887763332222 122345555554432 5454443 56899
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+|++.+.+.++.-.... ..+..+.+.-.+..+++|+--+.+.+...+..+-........-.+.+++++.+-
T Consensus 852 Lye~t~~~eLr~e~~~~---------~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil 922 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNIS---------NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL 922 (1096)
T ss_pred EEEccccceehhhhccc---------CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe
Confidence 99998875544322211 238888888899999999998888877666544222222222334477788777
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCC----------------CCceeecCCCCcEEEE--EEcCCCCEEEEeeCCCcEEE
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEA----------------GSSLCDLPHKRVVNSA--YFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~v 285 (449)
+...++.+..+|.+.+....+... +..+..+.|..-|+++ ..+|-+..++.|..+|.|-+
T Consensus 923 --~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 923 --DDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred --cCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEE
Confidence 556666677788887765543111 1122222344444441 23454555888888888766
Q ss_pred E
Q 013086 286 W 286 (449)
Q Consensus 286 w 286 (449)
-
T Consensus 1001 i 1001 (1096)
T KOG1897|consen 1001 I 1001 (1096)
T ss_pred E
Confidence 4
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.00032 Score=67.14 Aligned_cols=154 Identities=15% Similarity=0.102 Sum_probs=83.7
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC--CCceeeeeecCCCCCCCCCcccce
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~i 172 (449)
.+.|++-+.........+.++..+.|-.+.|...+-..+. -.-|.+.|||+. .|+....+.++.....+... ..|
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~-~~V 186 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP-QLV 186 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc-cee
Confidence 4567777765544333344678888999999654333333 334678899875 45554444443322111111 224
Q ss_pred eEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCc
Q 013086 173 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 252 (449)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 252 (449)
..+-|.++..++..+..++.+++....+... .++.. |...+..+++.. .+-+++.
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rs--Hs~~~~d~a~~~-~g~~~l~-------------------- 241 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRS--HSQRVTDMAFFA-EGVLKLA-------------------- 241 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--HHHHh--cCCCcccHHHHh-hchhhhe--------------------
Confidence 4444445666777777788887776655332 12222 333455444432 1111111
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 253 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 253 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.+||||..|++++.||.++.|.+.
T Consensus 242 -------------~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 242 -------------SLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred -------------eeCCCCcEEEEeecCCccceeeee
Confidence 067777777777777777777653
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.54 E-value=0.14 Score=47.68 Aligned_cols=153 Identities=11% Similarity=0.163 Sum_probs=92.7
Q ss_pred CceeEEEEeeCCCCeEEEEe--CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC----CCEEEEEcCCC
Q 013086 118 CIVNNIRFNPTNDGTVYAAS--SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE----KGVVLVADNFG 191 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg 191 (449)
.++..++|... .+.+++.- .+|.+++=| ...+..++ .|..+.|.|- ...+++.....
T Consensus 20 HPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqFE-------------hV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQFE-------------HVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeeccc-------------eeeeeeecCcccCCCCceEEEeccc
Confidence 47889999854 55555543 244444332 22333332 2899999985 33566666778
Q ss_pred eEEEEECCCCCCcc-ce--EEeecC--CCc--eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 192 FLYLVDARTNSRSG-EA--ILIHRK--GSK--VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 192 ~i~i~d~~~~~~~~-~~--~~~~~~--~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
.|.+|.+....... +. .+..+. ..+ .....|+| ....|++-.....-.+++++.... .....+...+.|.|
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~IhC 160 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLIHC 160 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceEEE
Confidence 99999986321110 00 011111 111 23568999 888888877666666777765333 23333467789999
Q ss_pred EEEcCCCCEEEEeeC-CCcEEEEeCC
Q 013086 265 AYFSPSGSKILTTSQ-DNRLRIWDSI 289 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~-dg~i~vwd~~ 289 (449)
.+|.+||+.|+++-. .=.-++||-.
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCc
Confidence 999999998877643 3356778754
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.49 E-value=0.47 Score=40.72 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=88.2
Q ss_pred ceeEEEEeeCCCCeEEEEe---CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 119 IVNNIRFNPTNDGTVYAAS---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
.+.+.+++++ +..++... ....|+++... ......... ..+..-.|++++...++...+....+
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCC--CcceeeccC----------CccccccccCCCCEEEEEcCCCceEE
Confidence 6889999999 66665554 33445555443 222222110 12677789999887777776666666
Q ss_pred EE-CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe---CCCeEEEEEccCCCCC------Cceeec-CCCCcEEE
Q 013086 196 VD-ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAG------SSLCDL-PHKRVVNS 264 (449)
Q Consensus 196 ~d-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~------~~~~~~-~~~~~v~~ 264 (449)
+. ...+...............|..+.++| ++..++... .++.|.+--+...... ...... .....+..
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 63 333332211112222212799999999 888776665 3577777765433333 111111 23467899
Q ss_pred EEEcCCCCEEEEeeCCC
Q 013086 265 AYFSPSGSKILTTSQDN 281 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg 281 (449)
+.|.+++.+++.+...+
T Consensus 171 v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeecCCCEEEEEeCCCC
Confidence 99999998777766543
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.41 E-value=0.26 Score=47.79 Aligned_cols=187 Identities=11% Similarity=-0.033 Sum_probs=88.1
Q ss_pred cEEEEEcCCC------cEEEEeCcCCeeeEEEecc-cCCceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCCCceee
Q 013086 87 HILLSGDKKG------QVGVWDFYKVSEKIVYGNI-HSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALS 154 (449)
Q Consensus 87 ~~l~t~~~d~------~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~ 154 (449)
.+++.|+.++ .+..||..+.......... ..... +++. -+ +..++.|+.+ ..+..||..+++...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FN-NRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-EC-CEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 5677776542 5677887765442211100 11111 2222 23 6677777765 357788887765443
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC------CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
....+.. .. -.++ ..-++...+.|+.+ ..+..||+.+....... ...... .-.+++.. ++.
T Consensus 373 ~~~lp~~-----r~---~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r-~~~~~~~~--~~~ 439 (534)
T PHA03098 373 EPPLIFP-----RY---NPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPISH-YGGCAIYH--DGK 439 (534)
T ss_pred CCCcCcC-----Cc---cceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCccc-cCceEEEE--CCE
Confidence 2211111 10 1111 22356666766632 46888998775432110 001010 11122222 556
Q ss_pred EEEEEeCCC--------eEEEEEccCCCCCCceeecCCC-CcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q 013086 229 LLLSCGNDH--------FARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 292 (449)
Q Consensus 229 ~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 292 (449)
+++.|+.+. .+.+||..+.+-.. +...... .....+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceee-CCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 777776432 38888887533211 1111111 11112222 66677777654 367777776543
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.27 E-value=0.64 Score=39.90 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=87.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe-CCCCc
Q 013086 75 RVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD-LETGL 151 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd-~~~~~ 151 (449)
.+.+.++++++..+.+....+ ..+.++.. +....... ....+....|+++ +...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 688999999996555555233 34555543 33333332 3347888899998 77776666666667764 23332
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc---CCCeEEEEECCCCCCc-----cce-EEeecCCCceEEEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRS-----GEA-ILIHRKGSKVVGLHC 222 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-----~~~-~~~~~~~~~v~~~~~ 222 (449)
.. ........... .|..+.++|||..++... .++.|.+--+.....- ... .........+..++|
T Consensus 100 ~~-~~~v~~~~~~~-----~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 100 GE-PVEVDWPGLRG-----RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ce-eEEecccccCC-----ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 22 11111111110 499999999999877765 3567777655422211 111 112222347899999
Q ss_pred cCCCCCEEEEEeCCC
Q 013086 223 NPIQPELLLSCGNDH 237 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg 237 (449)
.+ +..+++.+...+
T Consensus 174 ~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SD-DSTLVVLGRSAG 187 (253)
T ss_pred cC-CCEEEEEeCCCC
Confidence 98 777766665544
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.24 E-value=0.95 Score=41.57 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
..+.++..+|++++.++...=|.|.++|+.++..+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr 343 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR 343 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh
Confidence 457889999999999988888999999999887643
No 403
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.23 E-value=0.34 Score=47.05 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=82.5
Q ss_pred CCceeEEEEeeCCCCeEEEEe------CCC--eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 117 SCIVNNIRFNPTNDGTVYAAS------SDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
...+.+.+++|+ ++.++... .|. .|.+++.. +.. ..+.... ....-.|+|+|..+++..
T Consensus 349 ~~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~----------~~t~PsWspDG~~lw~v~ 415 (591)
T PRK13616 349 MGNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH----------SLTRPSWSLDADAVWVVV 415 (591)
T ss_pred ccCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC----------CCCCceECCCCCceEEEe
Confidence 346789999999 66655544 243 45454542 222 2221111 156677999988776664
Q ss_pred CC------------CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC-ce--
Q 013086 189 NF------------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS-SL-- 253 (449)
Q Consensus 189 ~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-- 253 (449)
.. +.+.+.++..+... . .....|..+.|+| ++..++... +|.|++=-+.....+. .+
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~----~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVA----S--RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhh----h--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecc
Confidence 32 23333344332221 1 2234699999999 998887766 5777773222211111 11
Q ss_pred -eec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 254 -CDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 254 -~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
..+ .....+.++.|..++.++ ++..++.-.+|.+
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 111 233346889999988855 5555554555554
No 404
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.14 E-value=0.75 Score=39.53 Aligned_cols=221 Identities=14% Similarity=0.225 Sum_probs=119.4
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCC----CccceEEeec-----CCCceEEEEEcCCCC------------CEE
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNS----RSGEAILIHR-----KGSKVVGLHCNPIQP------------ELL 230 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~~l 230 (449)
.+.++++|.+.+.++....+...+||..... ...-...... .....+.+.|+. .. ..+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 6789999999888888888999999986211 1111112221 123577777775 22 236
Q ss_pred EEEeCCCeEEEEEccCCCCC--Cceeec--CCCCcE-EEEEEcC--CCCEEEEee-CCCcEEEEeCCCCCCCCCCcccee
Q 013086 231 LSCGNDHFARIWDIRRLEAG--SSLCDL--PHKRVV-NSAYFSP--SGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~--~~~~~~--~~~~~v-~~~~~~~--~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
+.+++||+|.-|...-.... ...... .....| ..+++.. .+.+|..+. ..++|.|||-.-.....+ .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 77889999999985432220 111111 112333 3455553 355665554 478999998654432110 00000
Q ss_pred cCCCCccccc---------eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec-Cccceeceeee
Q 013086 303 SHDFNRHLTP---------FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-PNITTISPVNK 372 (449)
Q Consensus 303 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~ 372 (449)
..+.....+ +-+.|...+... + ....|..-|-|.+||+ +|..++++.. .....-+.+ +
T Consensus 183 -P~iPagyAPFnIqnig~~lyVtYA~qd~~~------~---d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~-a 250 (336)
T TIGR03118 183 -PALPAGYAPFNVQNLGGTLYVTYAQQDADR------N---DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGL-A 250 (336)
T ss_pred -CCCCCCCCCcceEEECCeEEEEEEecCCcc------c---ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCcee-e
Confidence 000000000 112222111111 0 0114556678999997 6888887743 223334444 3
Q ss_pred cCC------CCcEEeecC-CCeEEEEcCCCchhhhhhhccc
Q 013086 373 LHP------RDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 406 (449)
Q Consensus 373 ~~~------~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~ 406 (449)
..| .+.+|+--- ||+|..+|..+|+.+..+....
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 333 355555433 9999999999998777666543
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.15 Score=46.83 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=91.1
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC------CCeEEEEeCCCeEEEEeCCCCce-eeeeecCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLETGLA-LSLMNVNP 160 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~ 160 (449)
+|.++.....++=.|++.++.+.... .+.. |+-+.+.|+. ...-+.|-.|..|.-||.+-... .......
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~- 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS- 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec-
Confidence 44555555667777888888877763 3444 7777777762 12234566688899999873222 1111110
Q ss_pred CCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEE
Q 013086 161 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 240 (449)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 240 (449)
..........|++-. ...++++|+.+|.|++||- .+..... .++..+.+|..+..+. +|.+|++.+ +..+.
T Consensus 425 ---kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKT--AlPgLG~~I~hVdvta-dGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 425 ---KQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKT--ALPGLGDAIKHVDVTA-DGKWILATC-KTYLL 495 (644)
T ss_pred ---cccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhh--cccccCCceeeEEeec-cCcEEEEec-ccEEE
Confidence 111222224454433 3468999999999999997 4443322 3445556899999998 888877655 56777
Q ss_pred EEEcc
Q 013086 241 IWDIR 245 (449)
Q Consensus 241 iwd~~ 245 (449)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77764
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.08 E-value=1.8 Score=43.43 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=113.6
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC-------ceeEEEEeeC---------------CCCeEEEEeCCCeEEEE
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-------IVNNIRFNPT---------------NDGTVYAASSDGTVSCT 145 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~-------~v~~~~~~~~---------------~~~~l~s~~~dg~v~iw 145 (449)
.|+.++.++.|.-.|..+++.+..+...... ....+.+... ....++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777889999999998887776421110 1122333211 13478889999999999
Q ss_pred eCCCCceeeeeecCCCC-CCCC--CcccceeEEEEec--CCCEEEEEcC----------CCeEEEEECCCCCCccceEEe
Q 013086 146 DLETGLALSLMNVNPNG-WHGP--RTWRMLYGMDINP--EKGVVLVADN----------FGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~ 210 (449)
|.++|+....+...... +... ........+.-.| .+..+++|+. +|.|+-+|.++++..-.....
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99999988765432110 0000 0000000111111 1345666632 688999999998765433211
Q ss_pred ec--------------CCCce-EEEEEcCCCCCEEEEEe------------------CCCeEEEEEccCCCCCCceeecC
Q 013086 211 HR--------------KGSKV-VGLHCNPIQPELLLSCG------------------NDHFARIWDIRRLEAGSSLCDLP 257 (449)
Q Consensus 211 ~~--------------~~~~v-~~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~ 257 (449)
.. ....+ ..+++.+ ...++..+. ..+.|.-.|.++++..-.++...
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 00 00011 2344555 333333322 13456667777766544444333
Q ss_pred CC-------CcEEEEEEcC-CCC---EEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 258 HK-------RVVNSAYFSP-SGS---KILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 258 ~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
|. ....-+.+.. +|+ .++.++.+|.+.++|-++|+.+.+
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 21 1112222333 553 788999999999999999987553
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.07 E-value=0.31 Score=39.87 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=68.8
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEe--CCCCceee---eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTD--LETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
-..-+.++|+.+...+.++-+.+-+|.-|| ..+|.... .+.+.... +......-.+++..+|++.++.-..+
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---PFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---CcCCCCCCcceEccCCcEEEEEecCc
Confidence 344577899977444555666677887787 66664432 12221110 00111234566677889999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
.|...|+.+++.+.++.. .. ..+++.+|--.+-..|.+
T Consensus 234 ~V~~~dp~tGK~L~eikl-Pt--~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKL-PT--PQITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEEECCCCCcEEEEEEc-CC--CceEEEEecCCCccEEEE
Confidence 999999999998765533 32 279999997523344443
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.00 E-value=1.2 Score=40.68 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=89.0
Q ss_pred cEEEEEcCCCcEEEEeCcCC----eeeEEEec--ccC----CceeEEEEeeCCCCeEEEEeC------CCeEEEEeCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKV----SEKIVYGN--IHS----CIVNNIRFNPTNDGTVYAASS------DGTVSCTDLETG 150 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~----~~~~~~~~--~h~----~~v~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~ 150 (449)
.+++-|-.++.|.|.|+.+. +....+.. -+. .....+.--|+ ++.++++-. -|-+.+.|-++-
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~-G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD-GRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC-ccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 34445557889999999842 22333321 011 11222333456 778877632 256788888877
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--------------------CCCeEEEEECCCCCCccceEEe
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--------------------NFGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~ 210 (449)
+........... ...-+.+-+.|..+.++++. ....+.+||+.+.+....+ ..
T Consensus 168 ~v~g~We~~~~~------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i-dL 240 (461)
T PF05694_consen 168 EVKGRWEKDRGP------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI-DL 240 (461)
T ss_dssp -EEEE--SB-TT------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE-ES
T ss_pred cccceeccCCCC------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE-ec
Confidence 666665443221 11256677888888888753 1358999999998765432 22
Q ss_pred ecCCCceEEEEEcC--CCCCEEEEEeCCCeEEEEEccCCCC---CCceeecC-----------------CCCcEEEEEEc
Q 013086 211 HRKGSKVVGLHCNP--IQPELLLSCGNDHFARIWDIRRLEA---GSSLCDLP-----------------HKRVVNSAYFS 268 (449)
Q Consensus 211 ~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----------------~~~~v~~~~~~ 268 (449)
...+.-...+.|.. ....-++.+...++|..|--..... .+.+.... -..-|+.|..|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 22223455676654 1222344444455666654321110 01111100 13457899999
Q ss_pred CCCCEEEEeeC-CCcEEEEeCCCC
Q 013086 269 PSGSKILTTSQ-DNRLRIWDSIFG 291 (449)
Q Consensus 269 ~~~~~l~~~~~-dg~i~vwd~~~~ 291 (449)
.|.++|.+++. +|.|+.||+..-
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 99999988775 899999999653
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=95.99 E-value=0.62 Score=44.37 Aligned_cols=184 Identities=5% Similarity=-0.139 Sum_probs=85.1
Q ss_pred cEEEEEcCCC-----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC--CeEEEEeCCCCceeeeeecC
Q 013086 87 HILLSGDKKG-----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 87 ~~l~t~~~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 159 (449)
.+++.|+.++ .+..||..+..............-.+++ .-+ +...+.|+.+ .++..||..+++.......+
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC-CEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 6778887643 4667787765432221100111111222 223 6666777653 35778887666543322211
Q ss_pred CCCCCCCCcccceeEEEEecCCCEEEEEcCCC---eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC
Q 013086 160 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
.. . .......-++...+.|+.++ .+..||..+....... ...... .-.+++.. ++.+.+.|+
T Consensus 351 ~~-----r----~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r-~~~~~~~~--~~~IYv~GG-- 415 (480)
T PHA02790 351 KP-----R----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPH-YKSCALVF--GRRLFLVGR-- 415 (480)
T ss_pred CC-----C----cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCcc-ccceEEEE--CCEEEEECC--
Confidence 11 0 11112233567777777543 4678888765432110 000000 11122222 566666664
Q ss_pred CeEEEEEccCCCCCCceeecCC-CCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCC
Q 013086 237 HFARIWDIRRLEAGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 291 (449)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 291 (449)
.+.+||..+.+=. .+..... ......+.+ +++..++|+.+ ..+..||..++
T Consensus 416 -~~e~ydp~~~~W~-~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWT-LIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEe-EcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 4678887653221 1111111 111222222 67777777754 34666666543
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.90 E-value=1.1 Score=39.33 Aligned_cols=159 Identities=10% Similarity=0.027 Sum_probs=76.2
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
-.+.+..+..+++| +++++++......-|+.-...-.... ......|..|.|.|+ +.+.+.+ ..|.|+.=+....
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~-~~lw~~~-~Gg~~~~s~~~~~- 217 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD-GNLWMLA-RGGQIQFSDDPDD- 217 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT-S-EEEEE-TTTEEEEEE-TTE-
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC-CCEEEEe-CCcEEEEccCCCC-
Confidence 34678888899999 68888876666667875432222222 336788999999998 6665544 7888888772211
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
......+..+ .......+..++|.+++...++|+.. .+. .....++.=.+...........+.+.|.+ ...-++
T Consensus 218 -~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf~ 291 (302)
T PF14870_consen 218 -GETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVN-PDKGFV 291 (302)
T ss_dssp -EEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTTSS-EE-GGGTTSSS---EEEEEE-TTEEEE
T ss_pred -ccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCCccceECccccCCCCceEEEEEcC-CCceEE
Confidence 1111111010 01112237899999988777766654 332 22222221110001112233578888886 444455
Q ss_pred EEeCCCeEEEE
Q 013086 232 SCGNDHFARIW 242 (449)
Q Consensus 232 ~~~~dg~i~iw 242 (449)
. +.+|.|.-|
T Consensus 292 l-G~~G~ll~~ 301 (302)
T PF14870_consen 292 L-GQDGVLLRY 301 (302)
T ss_dssp E--STTEEEEE
T ss_pred E-CCCcEEEEe
Confidence 4 467877655
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.88 E-value=1.1 Score=39.27 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=76.5
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
..-.+.+..+.-+++ +.++++++....+.-||--.......-+. ....|..+.|.|++.+.+++ ..|.|
T Consensus 141 ~~~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~-~Gg~~ 209 (302)
T PF14870_consen 141 SETSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRN---------SSRRIQSMGFSPDGNLWMLA-RGGQI 209 (302)
T ss_dssp -S----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE-----------SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred cCCcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccC---------ccceehhceecCCCCEEEEe-CCcEE
Confidence 345577888888888 88888887666666776543222211111 11349999999998876755 78888
Q ss_pred EEEECC-CCCCccc-eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCC
Q 013086 194 YLVDAR-TNSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 270 (449)
Q Consensus 194 ~i~d~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 270 (449)
++=+.. ....-.+ ........-.+..++|.+ +....++|+ .|.+. .....++.=+..... .-......|.|.+.
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCC
Confidence 887722 1111000 000111222488999998 777777666 45433 333333322221111 24567888999866
Q ss_pred CCEEEEeeCCCcEEEE
Q 013086 271 GSKILTTSQDNRLRIW 286 (449)
Q Consensus 271 ~~~l~~~~~dg~i~vw 286 (449)
.+-++. +.+|.|--|
T Consensus 287 ~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEE-CCCcEEEEe
Confidence 555554 567776544
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.88 E-value=0.97 Score=44.20 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=74.9
Q ss_pred eeEEEEec--CCCEEEEEcCCCeEEEEECCC-------C----CC-----ccceEEeecCCCceEEEEEc--CCCCCEEE
Q 013086 172 LYGMDINP--EKGVVLVADNFGFLYLVDART-------N----SR-----SGEAILIHRKGSKVVGLHCN--PIQPELLL 231 (449)
Q Consensus 172 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~----~~-----~~~~~~~~~~~~~v~~~~~~--~~~~~~l~ 231 (449)
|+.+.... ....|+++..||.|.+|.+.+ . .. ..........+..+.+++++ . ..++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 55554433 456888999999999997532 0 00 00011112233468889998 6 778899
Q ss_pred EEeCCCeEEEEEccCCCC-CCceeecCCCCcEEEEEEcCCC---C---EEEEeeCCCcEEEEeC
Q 013086 232 SCGNDHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSG---S---KILTTSQDNRLRIWDS 288 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~vwd~ 288 (449)
+++....|.||-...... ........+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998888888886654211 1111122466789999998733 2 7888889999999888
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.49 E-value=0.076 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.7
Q ss_pred CceeEEEEeeCCC--CeEEEEeCCCeEEEEeCCCC
Q 013086 118 CIVNNIRFNPTND--GTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 118 ~~v~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 150 (449)
+.|.++.|+|.++ ++|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999998745 68888888999999999863
No 414
>PRK10115 protease 2; Provisional
Probab=95.42 E-value=3.3 Score=41.49 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=97.4
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCC----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCC-----CeEE
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSD-----GTVS 143 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d-----g~v~ 143 (449)
-.+..+.++|+|+.++++.+.+| .|++.|+.++..+.....+ .-..++|.++ ++.| ++...+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D-~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWAND-SWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeC-CCEEEEEEecCCCCCCCEEE
Confidence 34777899999954444433333 5888899877533332211 1156999998 5544 443322 3688
Q ss_pred EEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc---CCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 144 CTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 144 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.+++.++. ....+...... .......+.++++++..+ .++.+.+++................. ...
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~--------~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 273 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDT--------FYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEY 273 (686)
T ss_pred EEECCCChhHCeEEEeeCCCC--------EEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEE
Confidence 88888873 33333321111 012333444777666543 34578888853321111122222222 222
Q ss_pred EEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCceeecCC--CCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 219 GLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPH--KRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.+. +. ...+++.... ...|...++... ........+ ...|..+.+. .+.++++...+|.-+++-+.
T Consensus 274 ~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 274 SLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDE--QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEE-eC-CCEEEEEEcCCCCCceEEEecCCCc--ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 332 22 3333333222 123444444421 111112233 3468888887 33455555667765555443
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.38 E-value=1.1 Score=43.83 Aligned_cols=157 Identities=12% Similarity=0.120 Sum_probs=90.8
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeE------EEe---------------cccCCceeEEEEeeC-CCCeEEEEeCCCeEEE
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKI------VYG---------------NIHSCIVNNIRFNPT-NDGTVYAASSDGTVSC 144 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~------~~~---------------~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~i 144 (449)
.+|+.+. .+.|.||+........ .+. ......|+.|....- +...|+.|..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4566655 6799999986533211 000 001233555544322 2567889999999999
Q ss_pred EeCCCCc-----e---ee--eeecCCCCCCCCCcccceeEEEEe--cCCCEEEEEcCCCeEEEEECCCCCCccceEEeec
Q 013086 145 TDLETGL-----A---LS--LMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR 212 (449)
Q Consensus 145 wd~~~~~-----~---~~--~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 212 (449)
|.+++-. . .. .......+.........+++++++ ...++||+++....|.||-.............+.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 9764210 0 00 000000111111222358899998 7888999999988888876554211111111223
Q ss_pred CCCceEEEEEcCCC--CC---EEEEEeCCCeEEEEEc
Q 013086 213 KGSKVVGLHCNPIQ--PE---LLLSCGNDHFARIWDI 244 (449)
Q Consensus 213 ~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~iwd~ 244 (449)
+...|.+|.|.+.+ +. .+++++-.|.+.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44478999998733 22 7888889999999888
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.33 E-value=1.3 Score=36.21 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=62.9
Q ss_pred CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC---C---eEEEE---EccC-CCCCC
Q 013086 182 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND---H---FARIW---DIRR-LEAGS 251 (449)
Q Consensus 182 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~~-~~~~~ 251 (449)
..|+++.....|.+|++...... .......-+.|..+.++. .|+++++--.+ . .+++| .... ....-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~--~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP--LLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc--eeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 45555577778999999943322 223333345899999999 89999986432 2 56664 2221 00000
Q ss_pred ---------------------ceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCC
Q 013086 252 ---------------------SLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 252 ---------------------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.+-.++...++.+++-.| .|+ |++|+ ++.+.+|.+....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEE
Confidence 011113345677888888 555 44554 5589999886543
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.28 E-value=1.7 Score=37.45 Aligned_cols=208 Identities=12% Similarity=0.116 Sum_probs=113.6
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCc-----C-Ce-eeEEEec--c--cCCceeEEEEeeCC-----------CCeE
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFY-----K-VS-EKIVYGN--I--HSCIVNNIRFNPTN-----------DGTV 133 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~-----~-~~-~~~~~~~--~--h~~~v~~~~~~~~~-----------~~~l 133 (449)
-+.|+++|.+ .+-++....+...+||.. . .. ....+.. + .....+.+.|+... ...+
T Consensus 25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4679999998 455565667889999986 1 21 2222210 1 23467888887541 1236
Q ss_pred EEEeCCCeEEEEeCCCCce---eeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEE-cCCCeEEEEECCCCCCccc-
Q 013086 134 YAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVA-DNFGFLYLVDARTNSRSGE- 206 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~- 206 (449)
+.+++||+|.-|...-+.. ...+...... ....-..+++... +.+|..+ ...+.|.++|-.-......
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-----~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-----QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC-----CcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 7788999999998543332 1222221110 0112345565543 4555554 5678999998543321100
Q ss_pred eEE---ee-----------cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCcEEEEEEcC
Q 013086 207 AIL---IH-----------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSP 269 (449)
Q Consensus 207 ~~~---~~-----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~ 269 (449)
... .. ...-.|+-..-.+ +...=+.|-.-|.|-+||+. +..++.+ +.-.....|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~----G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN----GQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC----CcEEEEeccCCcccCCceeeeCh
Confidence 000 00 0000111111222 22223334445789999986 4444444 3334456677766
Q ss_pred ------CCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 270 ------SGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 270 ------~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
.+.+|+---.||+|..||..+|+.+
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 4666666667999999999888764
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=1.3 Score=35.69 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=93.3
Q ss_pred cEEEEEcC--CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE-EeCCCeEEEEeCCCCceeeeeecCCCCC
Q 013086 87 HILLSGDK--KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA-ASSDGTVSCTDLETGLALSLMNVNPNGW 163 (449)
Q Consensus 87 ~~l~t~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 163 (449)
.++.+.+. ...|++||+.+++......-. ...+..=-...- ++.+.. .-.+|.-..+|.++-+.+..+....+++
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecC-Cccccccceeec-cceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 66666554 346999999988776654321 111111111111 333333 3347888899999888888777655543
Q ss_pred CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC---ceEEEEEcCCCCCEEEEEeCCCeEE
Q 013086 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS---KVVGLHCNPIQPELLLSCGNDHFAR 240 (449)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~ 240 (449)
. +..|+..|+.++....++.-|.++.......... ..+. .++.+.|- ++.+.+-.-.+..|.
T Consensus 135 ----------g--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V--dG~lyANVw~t~~I~ 199 (262)
T COG3823 135 ----------G--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV--DGELYANVWQTTRIA 199 (262)
T ss_pred ----------e--eecCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee--ccEEEEeeeeecceE
Confidence 2 3446667888888888888888776554433221 1111 23444554 444444333333333
Q ss_pred EEEccCCCCCC---------ceee-cCCCCcEEEEEEcCCC-CEEEEe
Q 013086 241 IWDIRRLEAGS---------SLCD-LPHKRVVNSAYFSPSG-SKILTT 277 (449)
Q Consensus 241 iwd~~~~~~~~---------~~~~-~~~~~~v~~~~~~~~~-~~l~~~ 277 (449)
..+..+++... .+.. ..+..-.+.+++.|++ +++++|
T Consensus 200 rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333322211 1111 1244567889999976 455554
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.05 E-value=1.6 Score=35.90 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred EEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC--CEEEEE-cCCCeEEEEECCC
Q 013086 124 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLVA-DNFGFLYLVDART 200 (449)
Q Consensus 124 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~-~~dg~i~i~d~~~ 200 (449)
.|....+.++.+--..|.|.-||+.+.+..+... .... ..++.+--.+ ..++++ +..=.|--||...
T Consensus 21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~---------~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~ 90 (310)
T KOG4499|consen 21 HWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPP---------SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVS 90 (310)
T ss_pred ceEEecceEEEEEeccCceehhhhhhhheEEEEE-ecCc---------ceeEEEEecCCCceEEEeecceEEEEEccccc
Confidence 3433324566665567778889988765443221 1111 2223232222 233333 3323445566332
Q ss_pred CC--CccceE--EeecCCCceEEEEEcCCCCCEEEEEeC---------CCeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 201 NS--RSGEAI--LIHRKGSKVVGLHCNPIQPELLLSCGN---------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 201 ~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
.. ....+. .......+.+.-..+| ++++++-.-. .|.++.|-... ....+ ...-.--+.++|
T Consensus 91 ~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i--~~~v~IsNgl~W 165 (310)
T KOG4499|consen 91 ESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELI--WNCVGISNGLAW 165 (310)
T ss_pred ceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCC--Cceee--ehhccCCccccc
Confidence 11 111110 1111233567777888 8887443222 24555565431 11111 122223356889
Q ss_pred cCCCCEEEEe-eCCCcEEEEe--CCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcc
Q 013086 268 SPSGSKILTT-SQDNRLRIWD--SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 268 ~~~~~~l~~~-~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
+.+.+.+... +.+-.|.-|| ..+|....+... ......... =++......+-..|.+..+.+ ..++
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i-~dlrk~~~~-------e~~~PDGm~ID~eG~L~Va~~---ng~~ 234 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI-FDLRKSQPF-------ESLEPDGMTIDTEGNLYVATF---NGGT 234 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCccee-EEeccCCCc-------CCCCCCcceEccCCcEEEEEe---cCcE
Confidence 9877766544 5566787787 677766442211 111100000 001111233333466555333 3468
Q ss_pred eEEEECCCceEEEEEecCccceeceeeecC-CCCcEEee
Q 013086 345 IDFIDITTGQLVAEVMDPNITTISPVNKLH-PRDDVLAS 382 (449)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~s 382 (449)
|...|..+|+.+.++.-+. ..++++ +|- ++-..|++
T Consensus 235 V~~~dp~tGK~L~eiklPt-~qitsc-cFgGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPT-PQITSC-CFGGKNLDILYV 271 (310)
T ss_pred EEEECCCCCcEEEEEEcCC-CceEEE-EecCCCccEEEE
Confidence 9999999999999998886 667766 553 43334433
No 420
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.97 E-value=0.84 Score=42.03 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=88.7
Q ss_pred CCeEE-EEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-------CEEEEEcCCCeEEEEECCCC
Q 013086 130 DGTVY-AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-------GVVLVADNFGFLYLVDARTN 201 (449)
Q Consensus 130 ~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~dg~i~i~d~~~~ 201 (449)
..+|+ .|+....++-.|++.|+.+.....+.. + -+.|.|+. ..-++|-.+..|.-.|.+..
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 44444 455566788889999998888776544 3 45566542 23445556666777777654
Q ss_pred CCccceEEeec--CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC
Q 013086 202 SRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 202 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
........... ......+..-. ...++++++..|-|++||.-.......+ .+....|..+..+.+|+++++.+.
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred CCceeeeeehhccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcC--cccccceeeeEeecCCcEEEEeec
Confidence 32111111110 11112222222 5679999999999999996543332223 245677999999999999887775
Q ss_pred CCcEEEEeCC
Q 013086 280 DNRLRIWDSI 289 (449)
Q Consensus 280 dg~i~vwd~~ 289 (449)
. .|.+-|++
T Consensus 624 ~-yllL~d~~ 632 (776)
T COG5167 624 N-YLLLTDVP 632 (776)
T ss_pred c-eEEEEecc
Confidence 4 78888875
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=4.1 Score=39.73 Aligned_cols=205 Identities=10% Similarity=-0.012 Sum_probs=95.3
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
+...++..+|..-.-+. +.--.|+|+++..... ..+.-.|. .+-.+.|+.+ ..|+....+|++++|++.. ..+
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL-~~~~w~~~-~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~g-e~i 116 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLL-GRILWKHG-ELIGMGWSDD--EELICVQKDGTVHVYGLLG-EFI 116 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccccch-HHHHhcCC-CeeeecccCC--ceEEEEeccceEEEeecch-hhh
Confidence 34445555553211111 2334688888765433 33322344 7888999974 5677788999999999863 333
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC--CEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLL 231 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~ 231 (449)
.......+. ....|..+.+..+| +++-..+|.+.+..-.................+..|-...+... ..++
T Consensus 117 e~~svg~e~-----~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll 189 (829)
T KOG2280|consen 117 ESNSVGFES-----QMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL 189 (829)
T ss_pred ccccccccc-----ccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE
Confidence 221111010 00114444444444 33434445544433221111111101111111112222222011 1111
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
-....-...++-.... ...........+.+..+..||+.++|+.-...|.|.+-+.+..+.
T Consensus 190 ~v~~~v~~~~~q~~~~-~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 190 DVDVAVGLHICQVEES-RVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred eechhhhhcccceecc-cccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 1110000111111111 111111111236688899999999999999999999988875544
No 422
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.65 E-value=0.2 Score=28.75 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCC--CEEEEEeCCCeEEEEEccC
Q 013086 216 KVVGLHCNPIQP--ELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 216 ~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 246 (449)
.+.++.|+|..+ .+|+..-..|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 688999998555 6999988899999999985
No 423
>PHA03098 kelch-like protein; Provisional
Probab=94.43 E-value=3 Score=40.56 Aligned_cols=149 Identities=7% Similarity=-0.024 Sum_probs=71.6
Q ss_pred CCeEEEEeCCC------eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEEC
Q 013086 130 DGTVYAASSDG------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDA 198 (449)
Q Consensus 130 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 198 (449)
+..++.|+.++ .+..||..+.+....-..+. +.. ....+ .-++..++.|+.+ ..+..||.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~R~--~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-----PRK--NPGVT--VFNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc-----ccc--cceEE--EECCEEEEEeCCCCCEecceEEEEcC
Confidence 55666776532 57788888776533221110 111 11112 2356777777765 35778888
Q ss_pred CCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC------CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 199 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
.+....... ...... .-.+++.. ++.+++.|+.+ ..+..||..+.+-.. +........-.++. ..++.
T Consensus 366 ~~~~W~~~~-~lp~~r-~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~-~~~~~ 439 (534)
T PHA03098 366 GESKWREEP-PLIFPR-YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAI-YHDGK 439 (534)
T ss_pred CCCceeeCC-CcCcCC-ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEE-EECCE
Confidence 765432111 011110 11122222 56777777732 358889987532211 11111111111222 22566
Q ss_pred EEEEeeCCC--------cEEEEeCCCCCC
Q 013086 273 KILTTSQDN--------RLRIWDSIFGNL 293 (449)
Q Consensus 273 ~l~~~~~dg--------~i~vwd~~~~~~ 293 (449)
.++.|+.++ .+.+||..+++.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCce
Confidence 666666431 378888876654
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=0.23 Score=50.04 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=91.1
Q ss_pred eeeeccC-ccEEEEEEeCCCCcEEE--EEcCCCcEEEEeCcCCeeeE----E------EecccCCceeEEEEeeCCCCeE
Q 013086 67 AVIRYHS-RRVTCLEFHPTNNHILL--SGDKKGQVGVWDFYKVSEKI----V------YGNIHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 67 ~~~~~h~-~~V~~~~~~~~~~~~l~--t~~~d~~i~vwd~~~~~~~~----~------~~~~h~~~v~~~~~~~~~~~~l 133 (449)
..++-|. -+|..+..++|+ .+.+ ..+.+-.|..||+.+-.... . ..........++.|+|.-....
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNS 171 (1405)
T ss_pred cceeeeccccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchh
Confidence 4444443 356666677775 3332 23334478899987532211 1 1111234567888998755667
Q ss_pred EEEeCCCeEEEEeCCCCcee-eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC--CCccceEEe
Q 013086 134 YAASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN--SRSGEAILI 210 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~ 210 (449)
+++..|+.|++..+...... ..+.. ....++++|+|.|+.+++|...|++.-|-..-. ..+... .
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p~----------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P--p 239 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFPV----------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP--P 239 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccCc----------ccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC--C
Confidence 78888999998876532221 11111 123899999999999999999999988865432 111111 0
Q ss_pred ecCCCceEEEEEcCCCCCEEEE
Q 013086 211 HRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
......|.+|.|.. ...++++
T Consensus 240 ~~e~yrvl~v~Wl~-t~eflvv 260 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLS-TQEFLVV 260 (1405)
T ss_pred cCCCcceeEEEEec-ceeEEEE
Confidence 11134799999986 5555554
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.28 E-value=1.4 Score=43.77 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccC--C--------CCCCc---------eeecCCCCcEEEEEEcCC---CC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRR--L--------EAGSS---------LCDLPHKRVVNSAYFSPS---GS 272 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~--------~~~~~---------~~~~~~~~~v~~~~~~~~---~~ 272 (449)
..|..+.++| .+.+++..|..|. .|..+.. + ..... +........|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 9998888887654 4443321 0 00000 001134567899999994 68
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q 013086 273 KILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~ 291 (449)
.|++-..|+.+|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999643
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.27 E-value=4.2 Score=37.25 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=74.9
Q ss_pred ccEEEEEEeCCCCcEEEEEc-----------CCC-cEEEEeCcCC--e--eeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 74 RRVTCLEFHPTNNHILLSGD-----------KKG-QVGVWDFYKV--S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~-----------~d~-~i~vwd~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
.....|+|.++| +++++-. ..+ .|.+++-.++ . ....+. ......+.|++.++ + |+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~-G--lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVG-G--VYVAT 88 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecC-C--EEEeC
Confidence 346679999999 5555532 223 6777764322 2 222332 23345688999887 6 44445
Q ss_pred CCCeEEEEeCCCC-----ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-------------------CeE
Q 013086 138 SDGTVSCTDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-------------------GFL 193 (449)
Q Consensus 138 ~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i 193 (449)
.....++.|.... +....+..-.. ...........++|.|+|.+.++-+.. |.|
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~--~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGG--QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCC--CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 4443334454321 11111111101 000012237789999999876654421 344
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.-++...... +. ..........++|+| +++++++-.
T Consensus 167 ~r~~pdg~~~--e~--~a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKL--RV--VAHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred EEEecCCCeE--EE--EecCcCCCccceECC-CCCEEEEcc
Confidence 5555444321 11 111112356788888 777766543
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.15 E-value=2.4 Score=41.11 Aligned_cols=116 Identities=9% Similarity=0.059 Sum_probs=72.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC-CCeEEEEeCCCeEEEEeCCC----
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLET---- 149 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~---- 149 (449)
...-+.-+.-+ +..++-+....+.|||...+.......-...+.|.++.|.... ++.+++.+..+.|.++.-..
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444445545 4445555556899999988775444322357889999997431 77888888899999985421
Q ss_pred -----CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC
Q 013086 150 -----GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 199 (449)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 199 (449)
-..+..+.... .+...|....|.++|.+++.++ ..+.++|-.
T Consensus 110 ~~~p~w~~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11223332211 1112478888999888776654 467777643
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=1.3 Score=42.94 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=69.8
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC-CCCCEEEEEeCCCeEEEEEccC-----C
Q 013086 174 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP-IQPELLLSCGNDHFARIWDIRR-----L 247 (449)
Q Consensus 174 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-----~ 247 (449)
-+.-+.-++..++-.....+.|||.+.+....+ ........|.++.|.. .+++.+++.+..+.|.+|--.. .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~--~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE--ESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEe--eeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 334444455555555566899999998763322 2234455899999864 2677888888889999985421 1
Q ss_pred C----CCCceeecCCC-CcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 248 E----AGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 248 ~----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
. ....+....+. .+|....|.++|.+++.+ ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 11112112233 678899999999766544 457888875
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.81 E-value=3.8 Score=34.93 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCC--eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
..-...+.|..+ +.++-+.+.-| .|+.+|+.+++......++...+ -..++.. +++.....-.++...
T Consensus 44 ~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--------gEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 44 TAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--------GEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp T-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE-TTEEEEEESSSSEEE
T ss_pred cccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--------ceeEEEE-CCEEEEEEecCCeEE
Confidence 344566788666 77777777655 79999999999888887765532 3344444 344555567789999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCC---CcEEEEEEcCCC
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK---RVVNSAYFSPSG 271 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 271 (449)
+||..+.+..... . ..+.=..++. ++..|+.......|+++|..+.+....+...... ..++-+.|- +|
T Consensus 114 ~yd~~tl~~~~~~-~---y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 114 VYDPNTLKKIGTF-P---YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp EEETTTTEEEEEE-E----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred EEccccceEEEEE-e---cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 9999986654322 2 2224555663 5566666666778999998776554444433222 245556665 56
Q ss_pred CEEEEeeCCCcEEEEeCCCCCC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
...|=.=....|...|..+|+.
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BE
T ss_pred EEEEEeCCCCeEEEEeCCCCeE
Confidence 5555444556777788888775
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=3 Score=33.78 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCeEEEEeC--CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccc
Q 013086 130 DGTVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGE 206 (449)
Q Consensus 130 ~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 206 (449)
+.++.+.+. ...|++||+.+|+.+......+....+. .++. -+. +....-.+|.-..+|..+.+....
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE----Git~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE----GITK-----LGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCcccccc----ceee-----ccceEEEEEeccceeEEEChHHhhhhcc
Confidence 555555544 4579999999999887776653111110 0111 122 223334578888899888765543
Q ss_pred eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce
Q 013086 207 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 253 (449)
. ...+.-..++. ++..|+.+....+++.-|..+......+
T Consensus 127 ~----~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 127 F----SYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred c----ccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceE
Confidence 2 22334455554 3344666555567777776654443333
No 431
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.77 E-value=4.9 Score=36.15 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=55.6
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcC-C----
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN-F---- 190 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d---- 190 (449)
..+.|+|.|+ +.+|++ ...|.|++++ ..+.....+...... .......+..++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v--~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV--FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT--BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccc--cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4578999998 766654 6699999999 444442222111111 1112234899999994 334433322 1
Q ss_pred ----CeEEEEECCCCC----CccceEEe-ec---CCCceEEEEEcCCCCCEEEEEeC
Q 013086 191 ----GFLYLVDARTNS----RSGEAILI-HR---KGSKVVGLHCNPIQPELLLSCGN 235 (449)
Q Consensus 191 ----g~i~i~d~~~~~----~~~~~~~~-~~---~~~~v~~~~~~~~~~~~l~~~~~ 235 (449)
..|.-|...... ....++.. .. .......|+|.| ++.+.++.+.
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~ 133 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGD 133 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCC
Confidence 234444443330 01111111 11 223567799999 8877666654
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=4 Score=35.03 Aligned_cols=195 Identities=13% Similarity=0.080 Sum_probs=114.9
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccC-CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
+-+..+.++.+ ++..+..+.-++|.|+.+...+.....-.. +--.++..+ +++.+++..|.-+.+.|+.+...
T Consensus 87 ~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCCC
Confidence 34556777653 455666677799999988766655432223 334444444 78888888666677888876432
Q ss_pred ---eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 153 ---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
.......... ...++. .|++..++..|+-+.+.|+.....+. ++.....+..+.++..++ +-.+
T Consensus 161 P~lagrya~~~~d---------~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsd-nr~y 227 (370)
T COG5276 161 PQLAGRYALPGGD---------THDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSD-NRAY 227 (370)
T ss_pred ceeeeeeccCCCC---------ceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecC-CeeE
Confidence 2222221111 123333 47788888899999999998866542 222222333678888876 5555
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
++.. +--+.+-|....+....+-......++.--.+.-.+++......+.-+-+-|+.
T Consensus 228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred EEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEecc
Confidence 5543 445777888766554554444333322221233356677766667667676764
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.31 E-value=6 Score=36.25 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEccCCC-CCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 216 KVVGLHCNPIQPELLLSCG-----------NDH-FARIWDIRRLE-AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
....|+|.+ +++++++-. ..+ .|.+++-.+.. .......+ ........+++.+++ ++ +++...
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD 91 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe
Confidence 467788888 888777642 223 67777643321 11111222 233456889999888 44 444443
Q ss_pred cEEEEeCCCC-CCCCCCccceecCCCC---ccccceeeeeccCCCCCceEEEcce----eccc-----CCCCCCcceEEE
Q 013086 282 RLRIWDSIFG-NLDSPSREIVHSHDFN---RHLTPFRAEWDPKDPSESLAVIGRY----ISEN-----YNGAALHPIDFI 348 (449)
Q Consensus 282 ~i~vwd~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~-----~~~~~d~~i~iw 348 (449)
..++.|.... +.......+....... .+.....+.|.|+. ......|.. .... ......+.|.-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 3334344321 1110111111111111 12223457787762 122221210 0000 000112456666
Q ss_pred ECCCceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 349 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 349 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
+..+++. ..+... ......+ +|+|+|+++++-.
T Consensus 170 ~pdg~~~-e~~a~G-~rnp~Gl-~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKL-RVVAHG-FQNPYGH-SVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeE-EEEecC-cCCCccc-eECCCCCEEEEcc
Confidence 6655543 233222 3445566 8999999888744
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.30 E-value=2.5 Score=38.92 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=61.0
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc-eeEEEEeeCC--------------
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-VNNIRFNPTN-------------- 129 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~~~~~-------------- 129 (449)
....|......+.+++.+|.+ +++|+...=|.|.++|+.++..+... +|-.+. +.-+......
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCCCC
Confidence 345677777889999999998 68888777799999999887655544 332221 1111100000
Q ss_pred -CC--eEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 130 -DG--TVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 130 -~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.. +++-+-.-|.|-||.+++|..+..+...
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 01 2334456899999999999887776653
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.11 E-value=10 Score=37.94 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=55.4
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC----------Cce---eeeeecCCCCCCCCCcccceeEEEEecC---C
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLET----------GLA---LSLMNVNPNGWHGPRTWRMLYGMDINPE---K 181 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~ 181 (449)
-.|..|.++|+ +.+++..|..| |.|-.+.. |+. .+.+.....- ........|..+.|+|. +
T Consensus 85 f~v~~i~~n~~-g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPT-GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCC-CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEcCCCCCC
Confidence 46889999999 98888888765 44444421 111 1222222221 12223346899999996 5
Q ss_pred CEEEEEcCCCeEEEEECCCCCCc
Q 013086 182 GVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 182 ~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
..|++-+.|+.+++||+.....+
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCC
Confidence 89999999999999999765444
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=3.6 Score=42.74 Aligned_cols=170 Identities=9% Similarity=0.084 Sum_probs=89.4
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEe-eCC------CCeEEEEeCCCeEEE
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN-PTN------DGTVYAASSDGTVSC 144 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~-~~~------~~~l~s~~~dg~v~i 144 (449)
|...=..+-+-|.=++.=+ +.|+.+.+|+.++......+ .+-...|..+..- |.. =++++..+.--.|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 3333344444454323223 44789999999986666655 4555566665532 221 233444444445666
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE--EECCCC---C--------------Ccc
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL--VDARTN---S--------------RSG 205 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~---~--------------~~~ 205 (449)
+-+.-.+.......-...+.-......|.++....+|+.+++|- ||.++- |....+ + .+.
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 64432211111100000011112223488888667777666554 444432 111111 0 001
Q ss_pred ceEEee-cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 206 EAILIH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 206 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.+.... .+..+|..+++.. ..+++.+-+..|+|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 111222 3345899999987 778999999999999999976
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.99 E-value=4.4 Score=33.22 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=80.6
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---C---eEEEE---ECCC-
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---G---FLYLV---DART- 200 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~~- 200 (449)
+.|+.+...+.|.+|++..........+..- ..|..+.++..|+++++--.+ . .+++| ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 5565556678899999985444333333222 248899999999999996322 2 55654 2221
Q ss_pred -CCCcc--------------------ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC-CCceeecC-
Q 013086 201 -NSRSG--------------------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-GSSLCDLP- 257 (449)
Q Consensus 201 -~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~- 257 (449)
..+.. ...... ...++.+++..|..|++++.. ++.+.+|.+..... ...+..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEec
Confidence 11110 011111 123678889999777766654 56788988764322 11111111
Q ss_pred --------CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 258 --------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 258 --------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
..-.+..+++ .+.++|..+.. .++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEecCC-EEEEEEE
Confidence 1223455555 46788877644 6666654
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=4.4 Score=37.02 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=80.0
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
-+.+-|...+..++++- .|.+.=|-+... ..+..+-....++|.++.|++| ++.+++--.+.+|.+++....+..
T Consensus 25 sngvFfDDaNkqlfavr--SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVR--SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceeeccCcceEEEEe--cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchh
Confidence 34455555453334433 345666655432 2233333346679999999999 999999999999999998544332
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
...... .......|..+.|+.... +|.....| +-+|........... ...+...|+-..|.+ +.+.++.+
T Consensus 102 l~~~~~-----ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrslRl--Vks~~~nvnWy~yc~-et~v~LL~ 171 (657)
T KOG2377|consen 102 LEYTQE-----CKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSLRL--VKSHNLNVNWYMYCP-ETAVILLS 171 (657)
T ss_pred hHHHHH-----hccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhhhh--hhhcccCccEEEEcc-ccceEeee
Confidence 222111 011112388888987744 44443333 344443332222222 223333688888888 66544443
No 439
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.82 E-value=11 Score=38.39 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=103.4
Q ss_pred ccCccEEEEEEe---CC---CCcEEEEEcCCCcEEEEeCc------CC---------eeeEEEe--cccCCceeEEEEee
Q 013086 71 YHSRRVTCLEFH---PT---NNHILLSGDKKGQVGVWDFY------KV---------SEKIVYG--NIHSCIVNNIRFNP 127 (449)
Q Consensus 71 ~h~~~V~~~~~~---~~---~~~~l~t~~~d~~i~vwd~~------~~---------~~~~~~~--~~h~~~v~~~~~~~ 127 (449)
.-..+|..|+|. .. ..++|++=. ...+.|+... .. ..+..+. ..-..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 21 124555543 4567777721 11 1112221 11245788999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCcee--eeeecC---CCCC-CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC
Q 013086 128 TNDGTVYAASSDGTVSCTDLETGLAL--SLMNVN---PNGW-HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 201 (449)
Q Consensus 128 ~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~---~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 201 (449)
.....||.....|...||++..+... ..+... .... ...........+.|.++-+.|++.+. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 87789999999999999999221111 111111 1111 11111233567889888888888776 57889999887
Q ss_pred CCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCC
Q 013086 202 SRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 247 (449)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 247 (449)
..... +........|..+.-+|.+..+++..+ ...|...++...
T Consensus 235 ~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEY-LVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred Cccch-hccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 65332 223334457999999984444444443 367888887753
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=92.59 E-value=7.6 Score=35.00 Aligned_cols=158 Identities=10% Similarity=0.014 Sum_probs=81.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEE-EeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGV-WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~v-wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
...+.++.+.+++ .+++++. .|.+.. ++- .+..-......-...++++.+.++ +..++++ ..|.+.+=..+.|.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~-g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPD-GNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC-eEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCC-CCEEEEe-cCCEEEEccCCCCC
Confidence 3468889999987 5666655 454432 221 222122222345567899999997 7666654 46766532344443
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
.-.....+.. .....+..+.+.+++..+++ +.+|.+.. ....++.-.............+.+.+.. ++..++
T Consensus 247 sW~~~~~~~~-----~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~~ 318 (334)
T PRK13684 247 SWSKPIIPEI-----TNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGFV 318 (334)
T ss_pred ccccccCCcc-----ccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeC-CCceEE
Confidence 3222211100 01123778889887775554 45565543 2222221111100011122577777775 555555
Q ss_pred EEeCCCeEEEEEc
Q 013086 232 SCGNDHFARIWDI 244 (449)
Q Consensus 232 ~~~~dg~i~iwd~ 244 (449)
.+..|.|..|+-
T Consensus 319 -~G~~G~il~~~~ 330 (334)
T PRK13684 319 -LGQRGVLLRYVG 330 (334)
T ss_pred -ECCCceEEEecC
Confidence 456788887763
No 441
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=4.1 Score=42.50 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=41.3
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
..-..++|+|.. .++|.|...|.|+++-...-+........-...+..+.|-.. .....+...+..+.+|...
T Consensus 36 ~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~~~~~~~~~~~ 108 (993)
T KOG1983|consen 36 STPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVG-ISRNLVLSDDDSLHLWSIK 108 (993)
T ss_pred CCCcceeecccc-ceEEEEEecccEEEecccceEEEeccccccchhhhheeeeec-ccccceeecccceeeeccc
Confidence 355678899987 799999999999999765543333221111112233333322 2233344445566666554
No 442
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.44 E-value=7.8 Score=34.80 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=88.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCc------EEEEeCcCC----eeeE-----EEecccCC-------ceeEEEEeeCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQ------VGVWDFYKV----SEKI-----VYGNIHSC-------IVNNIRFNPTND 130 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~------i~vwd~~~~----~~~~-----~~~~~h~~-------~v~~~~~~~~~~ 130 (449)
-+.++.|.+.+++.++ ++-+.+|. +...++... ..+. .+...... ...+|++.++ +
T Consensus 19 ~GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-G 96 (326)
T ss_pred cCcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-C
Confidence 4678899999655454 44455666 555554431 0010 11011111 3457888555 7
Q ss_pred CeEEEEeCC------CeEEEEeCCCCceeeeeecCCCC------CCCCCcccceeEEEEecCCCEEEEEcC-----CC--
Q 013086 131 GTVYAASSD------GTVSCTDLETGLALSLMNVNPNG------WHGPRTWRMLYGMDINPEKGVVLVADN-----FG-- 191 (449)
Q Consensus 131 ~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg-- 191 (449)
.++++.-.+ ..|..++.. |+....+..+..- .........+.+++++|+++.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 777776667 788888877 7776666443321 033455667999999999996666532 22
Q ss_pred e-------EEE--EECCCCC-Cccce-EEeec-----CCCceEEEEEcCCCCCEEEE
Q 013086 192 F-------LYL--VDARTNS-RSGEA-ILIHR-----KGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 192 ~-------i~i--~d~~~~~-~~~~~-~~~~~-----~~~~v~~~~~~~~~~~~l~~ 232 (449)
. +++ ||..+.. ..... +.... ....+..+.+.+ ++.+|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 1 444 4554422 22111 11211 345788899998 7776665
No 443
>PLN02193 nitrile-specifier protein
Probab=92.30 E-value=11 Score=36.02 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=52.2
Q ss_pred CCeEEEEeCC-----CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-----eEEEEECC
Q 013086 130 DGTVYAASSD-----GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDAR 199 (449)
Q Consensus 130 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~ 199 (449)
+.+++.|+.+ ..+.+||+.+.+..........+ ... .-.+++ .-++++++.|+.++ .+..||+.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P--~~R---~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~ 302 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPR---SFHSMA-ADEENVYVFGGVSATARLKTLDSYNIV 302 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCC--CCc---cceEEE-EECCEEEEECCCCCCCCcceEEEEECC
Confidence 5566666654 35888898876654322211000 001 011222 23456666666543 46778877
Q ss_pred CCCCccceEE--eecCCCceEEEEEcCCCCCEEEEEeCC----CeEEEEEccCC
Q 013086 200 TNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGND----HFARIWDIRRL 247 (449)
Q Consensus 200 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~ 247 (449)
+......... ..... .-..++.. ++.+++.++.+ ..+.+||+.+.
T Consensus 303 t~~W~~~~~~~~~~~~R-~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIR-GGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCEEEeCCCCCCCCCCC-CCcEEEEE--CCcEEEEECCCCCccCceEEEECCCC
Confidence 6542210000 00000 01122222 55677777655 45889998754
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=2.4 Score=43.94 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=91.3
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEE--------EecCCCEEEEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD--------INPEKGVVLVA 187 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~ 187 (449)
|...-..+-+.|.-+..-+|. |+.+.+|+.+++.....+..-... |..+. |.|.=+++++-
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTi--Dn~L~lWny~~~~e~~~~d~~sht---------Il~V~LvkPkpgvFv~~IqhlLvv 145 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITI--DNNLFLWNYESDNELAEYDGLSHT---------ILKVGLVKPKPGVFVPEIQHLLVV 145 (1311)
T ss_pred CcceeeeeccchhhcceEEEe--CCeEEEEEcCCCCccccccchhhh---------heeeeeecCCCCcchhhhheeEEe
Confidence 444445555556534444443 778999999986555544322211 22222 23333444444
Q ss_pred cCCCeEEEEECCCCCCcc------ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC--------C----
Q 013086 188 DNFGFLYLVDARTNSRSG------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE--------A---- 249 (449)
Q Consensus 188 ~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~---- 249 (449)
+.--.|.++-+.-..... ..+.....+..|+++.... +|+.+++|- || .+|.+.-.. .
T Consensus 146 aT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kic 221 (1311)
T KOG1900|consen 146 ATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKIC 221 (1311)
T ss_pred cccceEEEEEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhccccccc
Confidence 444556555443221111 1123334566799999665 777777765 55 444432100 0
Q ss_pred ----------CCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 250 ----------GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 250 ----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
...+... .+..+|..++.......|.+-+..|.|.+||+..
T Consensus 222 lt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 222 LTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1111222 3567999999998888999999999999999976
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.86 E-value=11 Score=35.30 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=43.7
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE--E----ecccCCceeEEEEeeC
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--Y----GNIHSCIVNNIRFNPT 128 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~--~----~~~h~~~v~~~~~~~~ 128 (449)
|..+.+.++...-..-+.|+|.|+| ++|++--..|.|++++..+...... + ...-......|+++|+
T Consensus 17 p~~f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 17 SENFDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCcEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3444455666566678899999999 6666654469999998655432111 1 0113567899999987
No 446
>PLN02153 epithiospecifier protein
Probab=91.29 E-value=11 Score=34.12 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=33.2
Q ss_pred cEEEEEcCC-------CcEEEEeCcCCeeeEEEecccCC-----ceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCC
Q 013086 87 HILLSGDKK-------GQVGVWDFYKVSEKIVYGNIHSC-----IVNNIRFNPTNDGTVYAASSD-----GTVSCTDLET 149 (449)
Q Consensus 87 ~~l~t~~~d-------~~i~vwd~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 149 (449)
.+++.|+.+ ..+.+||+.+..-......+... ....+.+ + +.+++.|+.+ ..+.+||+.+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G-TKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C-CEEEEECCCCCCCccCcEEEEECCC
Confidence 577777653 25778888765433221111000 1112222 2 5666777653 3578888887
Q ss_pred Ccee
Q 013086 150 GLAL 153 (449)
Q Consensus 150 ~~~~ 153 (449)
.+..
T Consensus 111 ~~W~ 114 (341)
T PLN02153 111 NEWT 114 (341)
T ss_pred CEEE
Confidence 6544
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.94 E-value=2.5 Score=35.29 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeee-ecCCCC----CCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLM-NVNPNG----WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART 200 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 200 (449)
+.+|++.+.+|.+++||+.+++....- ...+-- .........|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 788999999999999999988765332 100000 00002333477888887777665543 46777777553
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=3.3 Score=38.50 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEcc---------CCCC---------CCceeecCCCCcEEEEEEcCCC---CEE
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIR---------RLEA---------GSSLCDLPHKRVVNSAYFSPSG---SKI 274 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~---------~~~~~~~~~~~~v~~~~~~~~~---~~l 274 (449)
.|..+..++ .|..++..+.+|.+..+=.+ .++. ...+......-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467788888 88888888888866554211 1111 1111111122346678999964 677
Q ss_pred EEeeCCCcEEEEeCCCCC
Q 013086 275 LTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~ 292 (449)
..-+.|+.||+||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 778889999999997543
No 449
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.87 E-value=21 Score=36.62 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=48.2
Q ss_pred CccEEEEEEeCCC-----CcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCC--C------CeEEEEeC
Q 013086 73 SRRVTCLEFHPTN-----NHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTN--D------GTVYAASS 138 (449)
Q Consensus 73 ~~~V~~~~~~~~~-----~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~--~------~~l~s~~~ 138 (449)
+..|.|+++.++. .++++.++.|+.+++..+.....+..+. ++-..++.++.+-+.. + -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568889988764 3579999999999999988655444432 3445566666654431 1 24666777
Q ss_pred CCeEEEE
Q 013086 139 DGTVSCT 145 (449)
Q Consensus 139 dg~v~iw 145 (449)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7766544
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.76 E-value=0.052 Score=49.18 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=94.9
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEE-EEcCCCeEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLY 194 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~ 194 (449)
+........|-+. +.-++.++.+..|..||-. ++.......+ .....++|.-++..++ .+-..+.++
T Consensus 33 alv~pi~~~w~~e-~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~wDkegdvlavlAek~~piy 100 (615)
T KOG2247|consen 33 ALVGPIIHRWRPE-GHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAWDKEGDVLAVLAEKTGPIY 100 (615)
T ss_pred hccccceeeEecC-CCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhhccccchhhhhhhcCCCee
Confidence 4444455678888 5557777778888888854 3333322211 1256677877776554 466788999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC-CCCcEEEEEEcCCCCE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGSK 273 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 273 (449)
+||+.+.... ++.....+ .-.-+.|++ ....++.+...|.+.|++..+.+. +...+ |...+++++|.+.+..
T Consensus 101 lwd~n~eytq-qLE~gg~~--s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~---iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 101 LWDVNSEYTQ-QLESGGTS--SKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRR---IIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred echhhhhhHH-HHhccCcc--hHHHHhhcc-CCccccccccccceEEEeccchhh---hhhhcccccceeEEEeccccee
Confidence 9999875322 11111111 122277888 778888888999999999876333 22334 8889999999987654
Q ss_pred EEEeeCCCcEE
Q 013086 274 ILTTSQDNRLR 284 (449)
Q Consensus 274 l~~~~~dg~i~ 284 (449)
+.++.|..+.
T Consensus 174 -il~dcd~~L~ 183 (615)
T KOG2247|consen 174 -ILCDCDNTLS 183 (615)
T ss_pred -eecCcHHHHH
Confidence 4445454443
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=90.75 E-value=12 Score=33.70 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=79.6
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
...+.++.+.|+ +.+++++ ..|.+..-.-..++.-....... ...+..+.+.++++.++++. .|.+.+=
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~--------~~~l~~i~~~~~g~~~~vg~-~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAWTPHQRNS--------SRRLQSMGFQPDGNLWMLAR-GGQIRFN 240 (334)
T ss_pred cceEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeEEEeeCCC--------cccceeeeEcCCCCEEEEec-CCEEEEc
Confidence 456788888887 6555554 45655432111222112221111 12388899999988777654 4666432
Q ss_pred ECCCCCCccceEEe-ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEE
Q 013086 197 DARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 197 d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 274 (449)
....+..-...... ......+.++.+.| ++..++++ .+|.|.. ....++.-..... ..-......+.|..+++.+
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence 22222211111000 00112478888988 66655554 5675553 3333222122111 1122457778887666665
Q ss_pred EEeeCCCcEEEEeC
Q 013086 275 LTTSQDNRLRIWDS 288 (449)
Q Consensus 275 ~~~~~dg~i~vwd~ 288 (449)
++ +..|.|--|+-
T Consensus 318 ~~-G~~G~il~~~~ 330 (334)
T PRK13684 318 VL-GQRGVLLRYVG 330 (334)
T ss_pred EE-CCCceEEEecC
Confidence 54 55778777653
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=90.70 E-value=7.8 Score=37.06 Aligned_cols=143 Identities=10% Similarity=-0.068 Sum_probs=66.6
Q ss_pred CCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC---eEEEEeCCCCceeeeeec
Q 013086 84 TNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG---TVSCTDLETGLALSLMNV 158 (449)
Q Consensus 84 ~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~ 158 (449)
++ .+.+.|+.+ ..+..||..+........-.....-.+++. -+ +...+.|+.++ .+..||..+.........
T Consensus 318 ~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-IN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CC-EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-EC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 44 677777754 357778876543222111011111112222 23 66777777543 467888877655432211
Q ss_pred CCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC--
Q 013086 159 NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-- 236 (449)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 236 (449)
... . ....+..-++...+.| |.+.+||..+.+-.... ......... +++.. ++.+.+.|+.+
T Consensus 395 ~~~-----r----~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~-~m~~~r~~~-~~~v~--~~~IYviGG~~~~ 458 (480)
T PHA02790 395 YYP-----H----YKSCALVFGRRLFLVG---RNAEFYCESSNTWTLID-DPIYPRDNP-ELIIV--DNKLLLIGGFYRG 458 (480)
T ss_pred CCc-----c----ccceEEEECCEEEEEC---CceEEecCCCCcEeEcC-CCCCCcccc-EEEEE--CCEEEEECCcCCC
Confidence 111 0 1111223355555655 35678888765432111 111111112 22222 66777887754
Q ss_pred ---CeEEEEEcc
Q 013086 237 ---HFARIWDIR 245 (449)
Q Consensus 237 ---g~i~iwd~~ 245 (449)
..+..||..
T Consensus 459 ~~~~~ve~Yd~~ 470 (480)
T PHA02790 459 SYIDTIEVYNNR 470 (480)
T ss_pred cccceEEEEECC
Confidence 245556654
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.60 E-value=1.8 Score=36.06 Aligned_cols=67 Identities=6% Similarity=0.120 Sum_probs=46.0
Q ss_pred EecCCCEEEEEcCCCeEEEEECCCCCCccceEE----ee-------cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 177 INPEKGVVLVADNFGFLYLVDARTNSRSGEAIL----IH-------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
+...+.++++-+.+|.+++||+.+.+....... .. .....|..+.++. +|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 556788999999999999999998765432210 11 2334677777776 666666654 4677888764
No 454
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.44 E-value=1.4 Score=24.78 Aligned_cols=33 Identities=9% Similarity=0.322 Sum_probs=23.0
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCC--CcEEEE
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKK--GQVGVW 101 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d--~~i~vw 101 (449)
+.-....-....|+|||..++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455678899999997777777777 776666
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=9.3 Score=35.09 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=72.7
Q ss_pred ceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE-eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC
Q 013086 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249 (449)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 249 (449)
.|.++.|++|.+.+|+--.+..|.+++....+....... .......|....|.. + .-++..+..| +-+|-......
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEchhhh
Confidence 499999999999999999999999999854443322212 222333588999986 4 4455554433 66666543222
Q ss_pred CCceeec-CCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCC
Q 013086 250 GSSLCDL-PHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGN 292 (449)
Q Consensus 250 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~ 292 (449)
.++.. .+...|+-..|.++-+.++.++ ..+++.=+-++++.
T Consensus 145 --slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 145 --SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred --hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 22212 4777788888888776554443 34445445554443
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.66 E-value=15 Score=33.07 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=54.8
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEE---ecccCCceeEEEEeeC--CCCeEEEEeCC---------
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVY---GNIHSCIVNNIRFNPT--NDGTVYAASSD--------- 139 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~---~~~h~~~v~~~~~~~~--~~~~l~s~~~d--------- 139 (449)
-++|+|.|+| ++|++ ...|.|++++..... ..... ..........++++|+ ...+|+.....
T Consensus 4 P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDG-RLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTS-CEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCC-cEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 4789999998 66554 569999999933322 11222 1223456899999994 13444444431
Q ss_pred CeEEEEeCCCC--ce---eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 140 GTVSCTDLETG--LA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 140 g~v~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
..|.-|....+ .. ...+...... . .....-..|+|.|++.+.++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~-~--~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDT-S--SGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES--C--SSSS-EEEEEE-TTSEEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCC-C--CCCCCCccccCCCCCcEEEEeC
Confidence 24544554433 11 1111110110 0 1112256789999997666543
No 457
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.63 E-value=17 Score=33.70 Aligned_cols=151 Identities=12% Similarity=0.116 Sum_probs=87.8
Q ss_pred CCCCcEEEEEcCCCcEEEEeCcCCee---eEEEecccCCceeEEEEee---CCCCeEEEEeCCCeEEEEeCCCC--c---
Q 013086 83 PTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNP---TNDGTVYAASSDGTVSCTDLETG--L--- 151 (449)
Q Consensus 83 ~~~~~~l~t~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~--~--- 151 (449)
+++...+++|+..|.++||+...... -..+...-..+|..+..-. ......++.-.-..+.+|.+... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 34445789999999999999865331 1222233567888887542 21333444456778888887321 1
Q ss_pred --e--eeeeecCCCCCCCCCcccceeEEEEec----C-CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 152 --A--LSLMNVNPNGWHGPRTWRMLYGMDINP----E-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 152 --~--~~~~~~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
. +..+.. +.-......+.+-| . ..++.+-+.||.+.+|+-+...... ....-.-...+.+
T Consensus 114 g~~~~L~~~ye-------h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~----~lp~~llPgPl~Y 182 (418)
T PF14727_consen 114 GNQYQLELIYE-------HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR----FLPDFLLPGPLCY 182 (418)
T ss_pred CcEEEEEEEEE-------EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE----EcCCCCCCcCeEE
Confidence 1 111100 11111133444433 2 3578888999999999977632110 0111112345777
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcc
Q 013086 223 NPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
.+ ..+.|++++.+..|.-|...
T Consensus 183 ~~-~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 183 CP-RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ee-cCCEEEEecCceeEEEecHH
Confidence 77 77888999888889888754
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.60 E-value=17 Score=33.69 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCce-----eeeeecCCCCCCCCCcccceeEEEEec----CCCEEEEEcCCCeEEEEEC
Q 013086 128 TNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGMDINP----EKGVVLVADNFGFLYLVDA 198 (449)
Q Consensus 128 ~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~ 198 (449)
++...+++|+..|.++||+...+.. +...... .+|..+..-. .....++.-.-..+.+|.+
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~----------~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v 104 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK----------DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV 104 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecC----------CcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence 3367999999999999999855431 1111111 1255555432 2223333345567777777
Q ss_pred CCCCCc------c--ceEEeecCCCceEEEEEcCCC----CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEE
Q 013086 199 RTNSRS------G--EAILIHRKGSKVVGLHCNPIQ----PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAY 266 (449)
Q Consensus 199 ~~~~~~------~--~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 266 (449)
...... . .....|.-......+++-|.. ..+|.+-+.||.+.+|+-+.......+..+-.++ .+.
T Consensus 105 ~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~ 181 (418)
T PF14727_consen 105 SLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLC 181 (418)
T ss_pred EecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeE
Confidence 322111 1 111222222234445544422 4688899999999999976432211111112333 367
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCC
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
+.+.-..|++++.+..+..|...
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EeecCCEEEEecCceeEEEecHH
Confidence 88888889999988889888764
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.29 E-value=18 Score=33.94 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=80.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC------CCeEEEEeCCCeEEEEeCCC-CceeeeeecCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLET-GLALSLMNVNP 160 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~ 160 (449)
++..|..-..++-.|++.++.+... ..|... -+.|.|.. ...-++|-.+..|.-.|.+- |..+......
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW-~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK- 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEW-DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK- 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEe-ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-
Confidence 3445555566777788877777666 334443 56677752 12233444455565555543 2222211111
Q ss_pred CCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEE
Q 013086 161 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 240 (449)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 240 (449)
.........+. ......++++|+..|.|++||.-...... ..+..+..|..+.... +|.++++.+ ...|.
T Consensus 558 ----dY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta-~Gk~ilaTC-k~yll 627 (776)
T COG5167 558 ----DYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTA-NGKHILATC-KNYLL 627 (776)
T ss_pred ----hcccccccccc-ccccCceEEEecCCCceeeehhhcchhhh---cCcccccceeeeEeec-CCcEEEEee-cceEE
Confidence 01111112221 22356799999999999999965433221 2233444788899988 888776655 45788
Q ss_pred EEEcc
Q 013086 241 IWDIR 245 (449)
Q Consensus 241 iwd~~ 245 (449)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.94 E-value=17 Score=32.62 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=51.7
Q ss_pred cEEEEEcCCC-----cEEEEeCcCCeee---EEEecc-cCCceeEEEEeeCCCCeEEEEeC-----CCeEEEEeCCCCce
Q 013086 87 HILLSGDKKG-----QVGVWDFYKVSEK---IVYGNI-HSCIVNNIRFNPTNDGTVYAASS-----DGTVSCTDLETGLA 152 (449)
Q Consensus 87 ~~l~t~~~d~-----~i~vwd~~~~~~~---~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~ 152 (449)
.+++.|+.++ .+..+|+.+.... ...... ....-.+++.. + +.+.+.|+. ...+..||+.+.+.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5777777543 4666676654421 111100 11111122222 3 556666664 24688888887665
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC----eEEEEECCCCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNS 202 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 202 (449)
...-..+... . ....+...++.+.+.|+.++ .+..||+.+.+
T Consensus 152 ~~~~~~p~~~----r----~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGEP----R----VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCCC----C----CcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4322111110 0 11222334567777777654 35688887754
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=16 Score=34.34 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEEEcCCC--CCEEEEEeCCCeEEEEEccCC
Q 013086 216 KVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRL 247 (449)
Q Consensus 216 ~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 247 (449)
.+..++|+|.. ...|+.-+.|..|++||+...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 45667777733 456666677888888887653
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.32 E-value=3.1 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe
Q 013086 83 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYG 113 (449)
Q Consensus 83 ~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~ 113 (449)
|++.+++++...++.|.++|..+......+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4665566666678899999998877766664
No 463
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.10 E-value=21 Score=37.20 Aligned_cols=144 Identities=12% Similarity=0.140 Sum_probs=81.3
Q ss_pred cEEEEEcC---------CCcEEEEeCcC-----C------eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 87 HILLSGDK---------KGQVGVWDFYK-----V------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 87 ~~l~t~~~---------d~~i~vwd~~~-----~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
.+|+.|.. -|.+.|+|+-. + +....+.....++|..++=- ..+|+++. ...|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEcc-CcEEEEEE
Confidence 46777642 47899999732 1 12223334567778877654 34666655 45799999
Q ss_pred CCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 147 LET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 147 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++. ...+..--.... +.-.....-.++|+.|+--..|.+.-.........+.......-.+.++.|.-
T Consensus 1123 l~r~~~ligVaFiD~~----------~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLV- 1191 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLP----------LYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLV- 1191 (1366)
T ss_pred eccCCcceeeEEeccc----------eeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEE-
Confidence 944 333322111111 33333344467788887777777665544322211212222223577777776
Q ss_pred CCC--EEEEEeCCCeEEEEEcc
Q 013086 226 QPE--LLLSCGNDHFARIWDIR 245 (449)
Q Consensus 226 ~~~--~l~~~~~dg~i~iwd~~ 245 (449)
++. .++++..+++|++|-..
T Consensus 1192 dg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1192 DGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred cCCeeEEEEEcCCCcEEEEEeC
Confidence 433 67788889999988653
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.69 E-value=2.8 Score=40.92 Aligned_cols=68 Identities=22% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCCEEEEEeCCCeEEEEEccCCC-CCCceee-----------------------cCCCCcEEEEEEcC----CCCEEEEe
Q 013086 226 QPELLLSCGNDHFARIWDIRRLE-AGSSLCD-----------------------LPHKRVVNSAYFSP----SGSKILTT 277 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-----------------------~~~~~~v~~~~~~~----~~~~l~~~ 277 (449)
++..++.+..||.+......... ....... ......+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55677777888888887765411 0000000 00123455666666 77899999
Q ss_pred eCCCcEEEEeCCCCCC
Q 013086 278 SQDNRLRIWDSIFGNL 293 (449)
Q Consensus 278 ~~dg~i~vwd~~~~~~ 293 (449)
+.|+.||+||+.++++
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999987
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.36 E-value=24 Score=31.61 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=51.2
Q ss_pred CCeEEEEeCC-----CeEEEEeCCCCcee-eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-----CCeEEEEEC
Q 013086 130 DGTVYAASSD-----GTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDA 198 (449)
Q Consensus 130 ~~~l~s~~~d-----g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~ 198 (449)
+.+++.|+.+ ..+..+|+.+.+.. ........+ .... -.+++ .-++.+.+.|+. ...+..||+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp--~~~~---~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP--FTFE---NGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC--cCcc---CceEE-EECCEEEEEeCcCCCccCceEEEEcC
Confidence 5666777754 35667777765531 111111111 0000 11122 234566666664 246888998
Q ss_pred CCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC----eEEEEEccCC
Q 013086 199 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----FARIWDIRRL 247 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~ 247 (449)
.+.+-.... ..... ......+... ++.+.+.|+.++ .+..||..+.
T Consensus 147 ~~~~W~~~~-~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 147 ETQEWFELP-DFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCCCeeECC-CCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 875532110 11110 0111122222 667888887654 3567887653
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.79 E-value=13 Score=27.94 Aligned_cols=77 Identities=9% Similarity=0.066 Sum_probs=49.4
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--------eeEEEecccCCceeEEEEee---C-CCCeEEEEeCCCeEEE
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--------EKIVYGNIHSCIVNNIRFNP---T-NDGTVYAASSDGTVSC 144 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~~~---~-~~~~l~s~~~dg~v~i 144 (449)
..-.|....+ -|+.++.-|.|.|++..... .+..+. -...|++|+-.+ + ..+.|+.|+. ..|..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLA 77 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence 3446666664 47777788999999876432 223332 556788886544 2 2566777764 57999
Q ss_pred EeCCCCceeeeee
Q 013086 145 TDLETGLALSLMN 157 (449)
Q Consensus 145 wd~~~~~~~~~~~ 157 (449)
||+.....+....
T Consensus 78 YDV~~N~d~Fyke 90 (136)
T PF14781_consen 78 YDVENNSDLFYKE 90 (136)
T ss_pred EEcccCchhhhhh
Confidence 9998776554433
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.52 E-value=5.5 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.6
Q ss_pred ceeEEEEeeCC-----CCeEEEEeCCCeEEEEeCCC
Q 013086 119 IVNNIRFNPTN-----DGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 119 ~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~ 149 (449)
.|.+++|+|.+ +.+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999963 45788888999999998763
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.42 E-value=5.7 Score=38.77 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=30.7
Q ss_pred ceeEEEEee----CCCCeEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 119 IVNNIRFNP----TNDGTVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 119 ~v~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.+..++++. + ..++++.+.|+++++||+.+++++......
T Consensus 216 ~~~~~~~~~~~~~~-~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEIND-DTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ET-TTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 455566665 4 789999999999999999999997776554
No 469
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.19 E-value=23 Score=30.35 Aligned_cols=200 Identities=13% Similarity=0.042 Sum_probs=118.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.-..++-.+|| ..-+++...+.|=-.|..+++....- .+....-..|..-|+ +..-++-+.. -|.-.|-++... .
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPD-GSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCC-CCeeEecCcc-eeEEecCcccce-E
Confidence 45567888888 56778777777777788887766555 456666778888888 5554443333 455555555443 2
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
++.+..+ ..........|.+.|++-+++.. |.---.|..+.. ...+.. ..+...+.|+..| ++...++.-
T Consensus 138 ~f~lp~~-----~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~--i~vfpa-PqG~gpyGi~atp-dGsvwyasl 207 (353)
T COG4257 138 RFPLPLE-----HADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNV--ISVFPA-PQGGGPYGICATP-DGSVWYASL 207 (353)
T ss_pred Eeecccc-----cCCCcccceeeCCCccEEEeecc-ccceecCcccCc--eeeecc-CCCCCCcceEECC-CCcEEEEec
Confidence 3333211 11223777889999998888752 211112222111 111111 1233567888899 888888777
Q ss_pred CCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 235 NDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+..|-..|..+... ..+... .....-..+--+|.|..-++....+.+..||-.+
T Consensus 208 agnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 208 AGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 777787777765422 222211 1123344555677888888877778888887654
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.03 E-value=8.1 Score=35.40 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=96.3
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCccccee-EEEEecCCCEEEEEcCCCe
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY-GMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~ 192 (449)
..-...|..+-..|+ ++.++.-+. .++.++++.+...... +.-... .+ .....|. .+..-..+..++++..||.
T Consensus 217 ~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~ds-pg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIR-KLVDDS-PG-DSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchh-hhhhcC-CC-chHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 344567888889999 888887765 6888998876543322 111110 00 0001122 2223345677889999998
Q ss_pred EEEE-ECCCCCCc-cceEEeec-CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC
Q 013086 193 LYLV-DARTNSRS-GEAILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 269 (449)
Q Consensus 193 i~i~-d~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (449)
|.-| |.+..... ........ .+.++..+.-.. +.+-+++-+..|++.++.....+. .+. ...-..+.-+++||
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~--lL~-~~~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKL--LLF-ERAYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcc--eeh-hhhhcCcceeeeCc
Confidence 8776 55543322 11111111 112333333222 455677778888888887543221 221 12223566789999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCC
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.+.+|++- ..|.++++.+++..
T Consensus 368 ~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 368 NQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred ccchheee-cCCceEEEEecCCC
Confidence 99998864 46789999987654
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.78 E-value=33 Score=31.77 Aligned_cols=110 Identities=13% Similarity=0.028 Sum_probs=59.1
Q ss_pred ceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc--ceEE--eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG--EAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.+..+.+.+++..++++. .|.+..- ...+..-. .... .......+.++.+.+ ++..+++| ..|.+....- .
T Consensus 282 ~l~~v~~~~dg~l~l~g~-~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~D-~ 356 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTR-GGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRSTD-G 356 (398)
T ss_pred ceeeeeEcCCCCEEEEeC-CceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeCC-C
Confidence 388899999988877664 4554332 22221100 1111 111223588898887 66655555 5676665532 2
Q ss_pred CCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 247 LEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 247 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
++.-..... -......+.+.|.++++.+++| .+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 222111110 1234568899998776666554 57776544
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.47 E-value=27 Score=30.48 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=56.7
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe------CCCeEEEEeCCCCceeeeeecCCCCCCCCCcc
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTW 169 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 169 (449)
..|++||..+.+-...- .+-.+.|++|.|..+ .++++.|. ....+..||..+......-..... ...
T Consensus 16 ~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~-----~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG-NGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSN-----SIP 88 (281)
T ss_pred CEEEEEECCCCEeecCC-CCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccc-----cCC
Confidence 35999998876655444 446788999999865 66666664 345688888877654322211101 111
Q ss_pred cceeEEEEec-CC-CEEEEEc-C--CCeEEEEECCCCC
Q 013086 170 RMLYGMDINP-EK-GVVLVAD-N--FGFLYLVDARTNS 202 (449)
Q Consensus 170 ~~i~~~~~~~-~~-~~l~~~~-~--dg~i~i~d~~~~~ 202 (449)
..+..+.+.. +. +..+.|. . +..|..||-.+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 2366666643 33 3343433 2 2356666655433
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.22 E-value=38 Score=31.95 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=61.3
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC------CEEEEEc--
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK------GVVLVAD-- 188 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~-- 188 (449)
-...+.|+|.|+ +++|++--..|.|++++..++.......+.... . ......+..|+++|+- .+|.+..
T Consensus 29 L~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~-~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIV-N-DAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCcee-c-cCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 455789999998 776666554699999986655432222111100 0 0012348899999874 3444432
Q ss_pred --------CCCeEEEEECCCC--CCc--cceEEeec--CCCceEEEEEcCCCCCEEEEEeCC
Q 013086 189 --------NFGFLYLVDARTN--SRS--GEAILIHR--KGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 189 --------~dg~i~i~d~~~~--~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
....|.-|.+... ... ..++.... ....-..|+|.| ++.++++.+..
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence 1234555554321 111 11111110 011355788999 88777765544
No 474
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.15 E-value=0.27 Score=48.24 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=46.8
Q ss_pred cEEEEEEeC---CCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEE-----------eeCCCCeEEEEeCCC
Q 013086 75 RVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF-----------NPTNDGTVYAASSDG 140 (449)
Q Consensus 75 ~V~~~~~~~---~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~~l~s~~~dg 140 (449)
.+.-+.|+| +. -++..+..++.|++.++..... .+..+|...+..++| +|| |..|+.+..||
T Consensus 182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWAISDG 257 (1283)
T ss_pred Ccceeeeccccccc-ceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEeecCC
Confidence 334455554 33 4677777889999888766444 222457777666654 677 88888888888
Q ss_pred eEEEEeCC
Q 013086 141 TVSCTDLE 148 (449)
Q Consensus 141 ~v~iwd~~ 148 (449)
.++.|.+.
T Consensus 258 ~v~f~Qiy 265 (1283)
T KOG1916|consen 258 SVGFYQIY 265 (1283)
T ss_pred ccceeeee
Confidence 88877653
No 475
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.06 E-value=26 Score=30.04 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=97.0
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
...-..++-.|+ +..-+++...+.|--.|-.+|+.... .+.... ....+..-||+..-++-+.. -|.-+
T Consensus 61 G~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga--------~Phgiv~gpdg~~Witd~~~-aI~R~ 129 (353)
T COG4257 61 GSAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETY-PLGSGA--------SPHGIVVGPDGSAWITDTGL-AIGRL 129 (353)
T ss_pred CCCccccccCCC-CceEEecCccccceecCCCCCceEEE-ecCCCC--------CCceEEECCCCCeeEecCcc-eeEEe
Confidence 344566777888 88888888888888888888876543 222221 15567777888766664443 55556
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC---------CeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND---------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
|.++.....-.+.............|.+ .+++-+++... +.|++|+. ......+.|+.
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpa------------PqG~gpyGi~a 196 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPA------------PQGGGPYGICA 196 (353)
T ss_pred cCcccceEEeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeecc------------CCCCCCcceEE
Confidence 6655543322222223334677888998 88888887531 23333332 23344567889
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 268 SPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
.|+|..-++.-.++.|-..|..++
T Consensus 197 tpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCCcEEEEeccccceEEcccccC
Confidence 999998888777778888887666
No 476
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.90 E-value=29 Score=30.47 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=103.1
Q ss_pred cEEEEEEeCCCCcEEE-EEcC----------CCcEEEEeCcCCeeeEEEecc-----cCCceeEEEEeeCCC----CeEE
Q 013086 75 RVTCLEFHPTNNHILL-SGDK----------KGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTND----GTVY 134 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~-t~~~----------d~~i~vwd~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~----~~l~ 134 (449)
.|..+...+.+.-+++ +|.. .-.|.+||+.+.+.+..+.-. ....+..+.+....+ .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3667777777632222 2321 126889999998876665411 245678888877422 2444
Q ss_pred EEe-CCCeEEEEeCCCCceeeeeecCCCCCCCC----------CcccceeEEEEec---CCCEEEEEcCCC-eEEEEEC-
Q 013086 135 AAS-SDGTVSCTDLETGLALSLMNVNPNGWHGP----------RTWRMLYGMDINP---EKGVVLVADNFG-FLYLVDA- 198 (449)
Q Consensus 135 s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~---~~~~l~~~~~dg-~i~i~d~- 198 (449)
.+. ..+-|.++|+.+++..+............ .....+..++.+| +++.|......+ .++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 443 34689999999988765554322111000 0111255566655 555666554333 2332221
Q ss_pred --CCCCCcc------ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CC-CCcEEEEE
Q 013086 199 --RTNSRSG------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PH-KRVVNSAY 266 (449)
Q Consensus 199 --~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~~v~~~~ 266 (449)
+...... ........+.....+++++ ++.++++--....|..|+....-....+..+ .. -..+..+.
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 1111110 1112222223566788888 8999999989999999998752222222222 22 34567788
Q ss_pred EcC--CCCEEEEe
Q 013086 267 FSP--SGSKILTT 277 (449)
Q Consensus 267 ~~~--~~~~l~~~ 277 (449)
+.+ +|.+.+.+
T Consensus 241 i~~~~~g~L~v~s 253 (287)
T PF03022_consen 241 IDPEGDGYLWVLS 253 (287)
T ss_dssp E-T--TS-EEEEE
T ss_pred eccccCceEEEEE
Confidence 877 55544443
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.81 E-value=35 Score=31.21 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe----cCCCE--EEEE-cCC---CeEEEEECC
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----PEKGV--VLVA-DNF---GFLYLVDAR 199 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~-~~d---g~i~i~d~~ 199 (449)
..+++....++-+.+||+. |+.+..+... .+..+..- -.++. |+++ ..+ ..|++|.+.
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----------r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----------RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS------------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCC-----------CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence 5577777888899999997 4455544321 13333221 13332 3444 332 468888775
Q ss_pred CCCCccceE-----EeecCCCceEEEEE--cCCCCC-EEEEEeCCCeEEEEEccCCCCC----CceeecCCCCcEEEEEE
Q 013086 200 TNSRSGEAI-----LIHRKGSKVVGLHC--NPIQPE-LLLSCGNDHFARIWDIRRLEAG----SSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~ 267 (449)
......... ........++.+++ +|.++. ++++...+|.+..|.+...... ..++.+.-.+.+..|..
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVV 215 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVV 215 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEE
Confidence 321111100 01111124666665 443444 6666778899999888643332 23455555668999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC
Q 013086 268 SPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.....+|..+-++.-|.-|+.+.
T Consensus 216 DDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 216 DDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp ETTTTEEEEEETTTEEEEEESSC
T ss_pred ecccCCEEEecCccEEEEEecCC
Confidence 99888999999998888888753
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.20 E-value=6.2 Score=22.28 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCeEEEE-eCCCeEEEEeCCCCceeeeeecC
Q 013086 130 DGTVYAA-SSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 130 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
++.|+++ ..+++|.++|..+++.+..+...
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5555554 45889999999988887777653
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.70 E-value=29 Score=29.50 Aligned_cols=140 Identities=12% Similarity=0.118 Sum_probs=74.7
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---CeEEEEECCCCCCccceEEe---ecCCC
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---GFLYLVDARTNSRSGEAILI---HRKGS 215 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~---~~~~~ 215 (449)
-.+||+.+++... +...... ...+-.+-++|+++.+|+.. ..+++++............. -....
T Consensus 48 s~~yD~~tn~~rp-l~v~td~--------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDT--------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCC--------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC
Confidence 3578888876532 2222221 14445677899999998642 36888886541111000000 11122
Q ss_pred ceEEEEEcCCCCCEEEEEeCCC-eEEEEEccCCCC-CCceeecC------CCCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 216 KVVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEA-GSSLCDLP------HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~-~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
.-..+...| +++.|+.|+... +..+|.-+.... ...+..+. ...--..+...|+|++++.+..+ -.|||
T Consensus 119 WYpT~~~L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d 195 (243)
T PF07250_consen 119 WYPTATTLP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYD 195 (243)
T ss_pred ccccceECC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEe
Confidence 445566677 899999888764 334454322111 11111111 11112246678899999888765 45668
Q ss_pred CCCCCC
Q 013086 288 SIFGNL 293 (449)
Q Consensus 288 ~~~~~~ 293 (449)
..+.+.
T Consensus 196 ~~~n~v 201 (243)
T PF07250_consen 196 YKTNTV 201 (243)
T ss_pred CCCCeE
Confidence 776644
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.54 E-value=17 Score=29.02 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCC------CEEEEeeCCCcEEEEeCC
Q 013086 260 RVVNSAYFSPSG------SKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 260 ~~v~~~~~~~~~------~~l~~~~~dg~i~vwd~~ 289 (449)
..|.+++|||.| -+|++.+.++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999943 478888999999999875
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.42 E-value=54 Score=32.41 Aligned_cols=169 Identities=11% Similarity=0.107 Sum_probs=81.1
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee--eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-C--
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-F-- 190 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-- 190 (449)
-...|-++.|.++ +..+++...+|.|.+||...+.... .........-.+. ..|..........++++.+. .
T Consensus 128 l~~kvv~Ik~~~~-~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys--~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 128 LDDKVVGIKFSSD-GKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS--KFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred cccceEEEEEecC-CCEEEEEEcCCcEEEEeccccccccccccccccccceehh--hhhcccccccCCceEEEEEEcCCC
Confidence 4678999999988 8999999999999999994332221 1111111000000 11222211112334444433 2
Q ss_pred -CeEEEEECCCC-CCccceE--EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCC-CcE
Q 013086 191 -GFLYLVDARTN-SRSGEAI--LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHK-RVV 262 (449)
Q Consensus 191 -g~i~i~d~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~-~~v 262 (449)
-..+++.+... ....++. ..... ......|.-..|.+..- .++.|.+|++.+.+....+... ... ..+
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~--~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENF--GLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccC--CcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence 25677777211 1111111 01111 22223333324443333 5778999998765543333322 111 233
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 263 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 263 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.++.--...+.|++ .++.|++.|+.-...
T Consensus 281 vSl~~~s~nRvLLs--~~nkIyLld~~~~si 309 (670)
T PF10395_consen 281 VSLKPPSPNRVLLS--VNNKIYLLDLKFESI 309 (670)
T ss_pred eEeecCCCCeEEEE--cCCEEEEEeehhhhh
Confidence 33322113344443 356899999865443
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.15 E-value=67 Score=33.33 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=70.4
Q ss_pred CcEEEEeCcCCeeeEEEe--cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 96 GQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
|.++.|++........+. ..-.++|. +..|. ..++++|- ...+++||+...+.++...... ....|.
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f-~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~-------~p~~Is 980 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPF-QGRVLAGV-GRFLRLYDLGKKKLLRKCELKF-------IPNRIS 980 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccce--EEecc-CCEEEEec-ccEEEEeeCChHHHHhhhhhcc-------CceEEE
Confidence 446666654433322222 11223344 44455 44555544 5689999998877666554322 112355
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 013086 174 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 244 (449)
Q Consensus 174 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 244 (449)
.+++ .+..+++|+..-.+.++--+........+........|+++.+. +...++.+..=|.+.+..+
T Consensus 981 ~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 981 SIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 5554 45678888766655554443322221122222222356666666 5556777766676666654
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=12 Score=39.26 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=25.4
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCC
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDART 200 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 200 (449)
...++|+|...+++.++..|.|+++-...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccc
Confidence 66788999999999999999999986554
No 484
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=81.38 E-value=23 Score=35.69 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=46.5
Q ss_pred ceeEEEEecCCCEEEEEcCCCeEEEEECCCCC---------------------CccceEEeecCCCceEEEEEcCCCCCE
Q 013086 171 MLYGMDINPEKGVVLVADNFGFLYLVDARTNS---------------------RSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
.|.++.-+.+|+.+++|..| +.+|.+.-.. .+...+....++..|..+++.. ...+
T Consensus 183 nV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq-sRg~ 259 (1263)
T COG5308 183 NVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ-SRGL 259 (1263)
T ss_pred eeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc-cccc
Confidence 37888888888888888777 5556542110 0011111222344688888887 6677
Q ss_pred EEEEeCCCeEEEEEccC
Q 013086 230 LLSCGNDHFARIWDIRR 246 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~ 246 (449)
|.+-+....|+-|.+..
T Consensus 260 ly~Lr~kS~Vray~itk 276 (1263)
T COG5308 260 LYVLRKKSAVRAYSITK 276 (1263)
T ss_pred eeeecccceeeeEeeec
Confidence 88888888888888764
No 485
>PLN02153 epithiospecifier protein
Probab=81.07 E-value=42 Score=30.34 Aligned_cols=65 Identities=8% Similarity=0.071 Sum_probs=33.5
Q ss_pred cEEEEEcCC-----CcEEEEeCcCCeeeEEEec-----ccCCceeEEEEeeCCCCeEEEEeCC-----------CeEEEE
Q 013086 87 HILLSGDKK-----GQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAASSD-----------GTVSCT 145 (449)
Q Consensus 87 ~~l~t~~~d-----~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~d-----------g~v~iw 145 (449)
++++.|+.+ ..+.+||+.+..-...... .....-.+++. -+ +.+++.|+.+ ..|.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DE-NHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-EC-CEEEEECCccCCCccCCCcccceEEEE
Confidence 677777753 3577888876543321100 01111122222 23 5666676653 247788
Q ss_pred eCCCCcee
Q 013086 146 DLETGLAL 153 (449)
Q Consensus 146 d~~~~~~~ 153 (449)
|..+.+..
T Consensus 165 d~~~~~W~ 172 (341)
T PLN02153 165 NIADGKWV 172 (341)
T ss_pred ECCCCeEe
Confidence 88876544
No 486
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=62 Score=32.17 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=75.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE--EEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE-eCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT-DLET 149 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw-d~~~ 149 (449)
.+.+-.+.|+.+. . |+.-..+|++.||++....... .........|..+.|..+ |=.+.+. +|.+.+- +...
T Consensus 83 ~~~lI~mgWs~~e-e-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~-GVavlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 83 HGELIGMGWSDDE-E-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN-GVAVLTV--SGQVILINGVEE 157 (829)
T ss_pred CCCeeeecccCCc-e-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC-ceEEEec--CCcEEEEcCCCc
Confidence 3478899999886 4 6667889999999986543222 111122334555555544 4333333 3444433 3322
Q ss_pred Cceeeeeec-CCCCCCCCCcccceeEEEEecCCC---EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 150 GLALSLMNV-NPNGWHGPRTWRMLYGMDINPEKG---VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
.. ...+.- +... .. -.|-+..+++. .++-....-...++........ ..........+..+.++|
T Consensus 158 ~~-~~~~~diP~~~-~~------~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q--~~~~~~~~~~~~ki~VS~- 226 (829)
T KOG2280|consen 158 PK-LRKMPDIPYNE-LP------KSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ--LHALSWPNSSVVKISVSP- 226 (829)
T ss_pred ch-hhhCCCCCCcc-CC------CcceeEecCCCcceeEEeechhhhhcccceeccccc--ccccCCCCceEEEEEEcC-
Confidence 11 111111 1110 00 11222222211 1111110000011111111110 111111123688899999
Q ss_pred CCCEEEEEeCCCeEEEEEccC
Q 013086 226 QPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~ 246 (449)
+..+|+.=..+|.|.+-++..
T Consensus 227 n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 227 NRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred CcceEEEEecCCcEEEEecch
Confidence 889999999999999988764
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.84 E-value=0.31 Score=44.47 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=90.4
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeee
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 156 (449)
....|-+.+.. ++.++.+..+..||-........ .-.+...+++|..++...++.+-..+.+.+||+.+.... .+
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~agq~~le~---n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAGQVILEL---NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL 112 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhcceeccc---CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence 34567777745 66677788888998654333222 245567788898874555666667889999999764322 11
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
..... .. -.-+.|++....++.+...|.+.+++..+.+... ....+..+++++++.+ .+. .+.++.|
T Consensus 113 E~gg~------~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~l-Ed~-vil~dcd 179 (615)
T KOG2247|consen 113 ESGGT------SS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTL-EDY-VILCDCD 179 (615)
T ss_pred hccCc------ch--HHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecc-cce-eeecCcH
Confidence 11111 00 1126788888899999999999999988765442 2222444789999987 443 3444433
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.21 E-value=46 Score=30.18 Aligned_cols=15 Identities=20% Similarity=-0.044 Sum_probs=10.2
Q ss_pred CeEEEEeCCCCceee
Q 013086 140 GTVSCTDLETGLALS 154 (449)
Q Consensus 140 g~v~iwd~~~~~~~~ 154 (449)
..+.+||..+.+...
T Consensus 168 ~~v~~YDp~t~~W~~ 182 (346)
T TIGR03547 168 KNVLSYDPSTNQWRN 182 (346)
T ss_pred ceEEEEECCCCceeE
Confidence 457788887765543
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.13 E-value=53 Score=30.84 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
..|.++...+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3489999999889999999999999999964
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.05 E-value=23 Score=26.65 Aligned_cols=108 Identities=9% Similarity=0.099 Sum_probs=63.7
Q ss_pred EecCCCEEEEEcCCCeEEEEECCCCCCcc----ceEEeecCCCceEEEEEcCC----CCCEEEEEeCCCeEEEEEccCCC
Q 013086 177 INPEKGVVLVADNFGFLYLVDARTNSRSG----EAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~ 248 (449)
|......|++++..|.|.+++........ .....-.-...|++++-.+. ....|+.|+ ...|..||+....
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 44455578888889999999876543211 11122222336788765553 345777776 5679999997644
Q ss_pred CCCceeecCCCCcEEEEEEcC----CCCEEEEeeCCCcEEEEeCC
Q 013086 249 AGSSLCDLPHKRVVNSAYFSP----SGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~ 289 (449)
. .+ ...-...|+++.+-. ...++++ +.+..|.-||..
T Consensus 85 d--~F-yke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~ 125 (136)
T PF14781_consen 85 D--LF-YKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYE 125 (136)
T ss_pred h--hh-hhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCC
Confidence 3 22 123456677777643 2344444 445567777654
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.02 E-value=48 Score=30.32 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=104.3
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC---CCCe--EEEEe-CC---CeEEEEeCCC--Cceeee
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT---NDGT--VYAAS-SD---GTVSCTDLET--GLALSL 155 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~--l~s~~-~d---g~v~iwd~~~--~~~~~~ 155 (449)
.+++...+++-+.+||+...... .+. .+.++.+..-.. +++. |+.++ .+ .+|++|.+.. +. +..
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq-~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQ-SLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEE-EE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred ceEEEEeCCCCEEEEcCCCcEEE-eec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 46777788889999999865443 332 233444433211 1222 34443 32 4799998763 33 222
Q ss_pred eecCCCCCCCCCcccceeEEEEe--c-CCC-EEEEEcCCCeEEEEECCC---CCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDIN--P-EKG-VVLVADNFGFLYLVDART---NSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+.....+. ......++.+++- + ++. ++++...+|.+..|-+.. +.............+.+..+.... ...
T Consensus 144 v~~~~~p~--~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD-e~g 220 (381)
T PF02333_consen 144 VTDPAAPI--ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD-ETG 220 (381)
T ss_dssp -CBTTC-E--E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET-TTT
T ss_pred cCCCCccc--ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec-ccC
Confidence 21111100 0111236667663 3 344 666678889888887753 222223334444455788888887 777
Q ss_pred EEEEEeCCCeEEEEEccCCCC--CCceeec---CCCCcEEEEEEcC--CC-CEEEEee-CCCcEEEEeCC
Q 013086 229 LLLSCGNDHFARIWDIRRLEA--GSSLCDL---PHKRVVNSAYFSP--SG-SKILTTS-QDNRLRIWDSI 289 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~~~v~~~~~~~--~~-~~l~~~~-~dg~i~vwd~~ 289 (449)
.|..+-++.-|.-|+...... ...+... .....|-.|++-. ++ .||++++ .+++..||+..
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 899999998888888763222 2222222 2346777887754 33 3555554 47789999975
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.74 E-value=5.8 Score=20.97 Aligned_cols=26 Identities=50% Similarity=0.664 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeee
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSL 155 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~ 155 (449)
+..++.++.+|.+..+|..+|+.+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34688888999999999999887654
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.49 E-value=79 Score=32.49 Aligned_cols=166 Identities=13% Similarity=0.074 Sum_probs=95.8
Q ss_pred ccCCceeEEEEe---eC--C-CCeEEEEeCCCeEEEEeCCCCce---------------eeeeecCCCCCCCCCccccee
Q 013086 115 IHSCIVNNIRFN---PT--N-DGTVYAASSDGTVSCTDLETGLA---------------LSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 115 ~h~~~v~~~~~~---~~--~-~~~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~ 173 (449)
.-..+|..|+|. .. . ..+|++ -....+.|+...-.+. +..+.... .......
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~------tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD------TGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhh------cCCCccc
Confidence 467889999998 21 1 234444 4456777777322211 11111111 1122367
Q ss_pred EEEEec-CCCEEEEEcCCCeEEEEECCCCC-Cc-cceEEeecCC----------CceEEEEEcCCCCCEEEEEeCCCeEE
Q 013086 174 GMDINP-EKGVVLVADNFGFLYLVDARTNS-RS-GEAILIHRKG----------SKVVGLHCNPIQPELLLSCGNDHFAR 240 (449)
Q Consensus 174 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~-~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~i~ 240 (449)
.++|+| +...||+.+..|...||++.... .. .......... ..-..+.|.+ +...|++++ ...+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceE
Confidence 889998 45689999999999999992211 11 1110110111 1234778887 666677665 46799
Q ss_pred EEEccCCCCCCceeecCCCCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCC
Q 013086 241 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~ 291 (449)
++|+.+......+........|..+.-+|. +..++.. ...|...++...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 999987655332323345577888888886 3333332 246888888653
No 494
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.07 E-value=55 Score=30.39 Aligned_cols=153 Identities=8% Similarity=0.031 Sum_probs=77.5
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
...+..++++ .+++.+.....++-||--... .... ......+..+.|.++ +..++++ ..|.+. |....++.-.
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~d-g~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRAD-GGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCC-CCEEEEe-CCceEE-EecCCCCccc
Confidence 5556677887 566666543333334432211 1122 234567899999987 7666655 456543 4444443211
Q ss_pred --eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 155 --LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 155 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
.+..... ......+..+.+.+++..+++| ..|.+....- .++.-........-....+.+.|.+ +++.+++
T Consensus 315 ~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADI----KSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFD-DKKGFVL 387 (398)
T ss_pred ccceeeccc----CCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcC-CCceEEE
Confidence 1111000 0011237888888777755555 5565555432 2221111000122233678899876 5555555
Q ss_pred EeCCCeEEEE
Q 013086 233 CGNDHFARIW 242 (449)
Q Consensus 233 ~~~dg~i~iw 242 (449)
| .+|.|.-|
T Consensus 388 G-~~G~il~~ 396 (398)
T PLN00033 388 G-NDGVLLRY 396 (398)
T ss_pred e-CCcEEEEe
Confidence 5 57877655
No 495
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.72 E-value=54 Score=30.11 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=94.4
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEeccc-CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCC
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 167 (449)
+..+..+|.|.-.|..++..+....... ...+..-.+..+ + .++.++.++.+..+|..+|+......... .
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~----- 142 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-G-KIYVGSWDGKLYALDASTGTLVWSRNVGG-S----- 142 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-C-eEEEecccceEEEEECCCCcEEEEEecCC-C-----
Confidence 5556778888888888877654332111 122333333334 4 47888889999999998999888876544 0
Q ss_pred cccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC--CCeEEEEEcc
Q 013086 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN--DHFARIWDIR 245 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~ 245 (449)
..+..-.... ...+..++.++.+.-.|..++...............+..--. . ....+..+.. ++.+.-.|..
T Consensus 143 --~~~~~~~v~~-~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 --PYYASPPVVG-DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred --eEEecCcEEc-CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEcc
Confidence 0011111222 233344446677777777766553221110000001111000 1 2334444444 5567777776
Q ss_pred CCCCCCcee---ecCCCCc--EEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 246 RLEAGSSLC---DLPHKRV--VNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 246 ~~~~~~~~~---~~~~~~~--v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++....... ..+.... ...+.-.+ .+..+..++.++.+...|..+|+.
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCce
Confidence 554433221 1111110 00010000 122235556677788888877765
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.71 E-value=7 Score=19.94 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
.|.+++..+ .+++++...+.+++|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 577888765 7899999899999873
No 497
>PLN02193 nitrile-specifier protein
Probab=77.87 E-value=67 Score=30.73 Aligned_cols=151 Identities=9% Similarity=-0.018 Sum_probs=71.2
Q ss_pred cEEEEEcCC-----CcEEEEeCcCCeeeEEEec---ccCCceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCCCcee
Q 013086 87 HILLSGDKK-----GQVGVWDFYKVSEKIVYGN---IHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLAL 153 (449)
Q Consensus 87 ~~l~t~~~d-----~~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 153 (449)
++++.|+.+ ..+.++|+.+..-...... .....-.+++. -+ +.+++.|+.+ ..+..||+.+.+..
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DE-ENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-EC-CEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 567777654 3577888876543322110 01111122222 23 5666666654 34677888776543
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC----CeEEEEECCCCCCccceEEee-cCCCceEEEEEcCCCCC
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNSRSGEAILIH-RKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 228 (449)
.... .... ...+. -..++ .-+++.++.++.+ ..+.+||+.+.+......... .......+++.. ++.
T Consensus 308 ~~~~-~~~~-~~~R~---~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~ 379 (470)
T PLN02193 308 HCST-PGDS-FSIRG---GAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKH 379 (470)
T ss_pred eCCC-CCCC-CCCCC---CcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCE
Confidence 2211 0000 00010 11122 2356777777655 468899988765321100000 000011222222 567
Q ss_pred EEEEEeCC--------------CeEEEEEccCC
Q 013086 229 LLLSCGND--------------HFARIWDIRRL 247 (449)
Q Consensus 229 ~l~~~~~d--------------g~i~iwd~~~~ 247 (449)
+++.|+.. ..+.+||+.+.
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 78887753 24788888654
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.86 E-value=53 Score=29.55 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCe------EEEEeCCC--C--ce---eeeeecCCC-CCCCCCcccceeEEEEecCCC
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGT------VSCTDLET--G--LA---LSLMNVNPN-GWHGPRTWRMLYGMDINPEKG 182 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~------v~iwd~~~--~--~~---~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~ 182 (449)
-+.+..|.+.++ +..+++.+.+|. +..+++.. + .. .....+... +..-.....-.-++++.+++.
T Consensus 19 ~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788889876 666777777777 66555543 1 00 111111110 000000111255788877888
Q ss_pred EEEEEcCC------CeEEEEECCCCCCccce-----E-------EeecCCCceEEEEEcCCCCCEEEEEeC-----CC--
Q 013086 183 VVLVADNF------GFLYLVDARTNSRSGEA-----I-------LIHRKGSKVVGLHCNPIQPELLLSCGN-----DH-- 237 (449)
Q Consensus 183 ~l~~~~~d------g~i~i~d~~~~~~~~~~-----~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg-- 237 (449)
++++.-.+ ..|..++.. +.....+ + .......-.-+|+++| ++..|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCcc
Confidence 88877677 788888876 4332221 0 1112234578999999 8886665543 22
Q ss_pred e-------EEEE--EccCCC-CCCceee-cC------CCCcEEEEEEcCCCCEEEE
Q 013086 238 F-------ARIW--DIRRLE-AGSSLCD-LP------HKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 238 ~-------i~iw--d~~~~~-~~~~~~~-~~------~~~~v~~~~~~~~~~~l~~ 276 (449)
. ++++ |..+.. ....+.. +. ....|+.+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4454 443311 1111111 12 3467888888888886654
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.02 E-value=9.9 Score=21.14 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.9
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.++.++.+|.|.-.|.++|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4667799999999999999999887654
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.01 E-value=19 Score=33.11 Aligned_cols=171 Identities=15% Similarity=0.014 Sum_probs=0.0
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc-----ee-EEEEeeCCCCeEE
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-----VN-NIRFNPTNDGTVY 134 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~-----v~-~~~~~~~~~~~l~ 134 (449)
++...+..+..-...|..+-..|+| +.|..-+. .++.|+++.+.............. |+ .+..-.. +.-++
T Consensus 208 ~q~e~i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G-g~SLL 284 (733)
T COG4590 208 TQQEIIRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG-GFSLL 284 (733)
T ss_pred chhhhhhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC-ceeEE
Q ss_pred EEeCCCeEEEE------eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE
Q 013086 135 AASSDGTVSCT------DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 135 s~~~dg~v~iw------d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 208 (449)
++..||-|.-| +-..-..++.+...... +..+.-..+.+-+++-+.+|++.++.....+..
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~---------~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---- 351 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAE---------VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---- 351 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccCccc---------ceeeccccccceEEEEcCCCceeeeecccCcce----
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 249 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 249 (449)
.....-..+.-++++| +++++++-. .|.|+++.+.+...
T Consensus 352 L~~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 352 LFERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ehhhhhcCcceeeeCc-ccchheeec-CCceEEEEecCCCC
Done!