Query 013086
Match_columns 449
No_of_seqs 697 out of 3965
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 03:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.6E-45 8.8E-50 339.3 35.0 294 60-394 95-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.5E-44 5.1E-49 322.7 36.2 293 63-394 22-320 (321)
3 4e54_B DNA damage-binding prot 100.0 1.2E-44 4.1E-49 337.9 34.9 319 66-399 112-434 (435)
4 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-44 9.7E-49 324.7 35.8 314 64-402 6-342 (345)
5 1got_B GT-beta; complex (GTP-b 100.0 5E-44 1.7E-48 322.6 36.0 290 63-392 45-340 (340)
6 2ynn_A Coatomer subunit beta'; 100.0 1E-43 3.5E-48 315.3 36.5 292 66-395 6-302 (304)
7 3iz6_a 40S ribosomal protein R 100.0 2.9E-44 1E-48 329.1 30.3 317 60-397 53-377 (380)
8 3frx_A Guanine nucleotide-bind 100.0 1.7E-43 5.8E-48 316.0 34.2 293 64-396 8-318 (319)
9 2pbi_B Guanine nucleotide-bind 100.0 5.1E-43 1.8E-47 317.4 37.7 292 64-392 55-354 (354)
10 4ery_A WD repeat-containing pr 100.0 2.8E-42 9.5E-47 307.7 38.9 299 60-394 10-311 (312)
11 2xzm_R RACK1; ribosome, transl 100.0 1.2E-42 4.1E-47 314.0 32.5 297 63-397 11-342 (343)
12 2hes_X YDR267CP; beta-propelle 100.0 5.6E-42 1.9E-46 307.7 35.7 304 64-396 5-329 (330)
13 3ei3_B DNA damage-binding prot 100.0 4.6E-41 1.6E-45 308.8 38.7 314 62-395 62-382 (383)
14 4gqb_B Methylosome protein 50; 100.0 4.4E-42 1.5E-46 308.9 30.4 291 70-397 27-333 (344)
15 4g56_B MGC81050 protein; prote 100.0 1.5E-42 5.1E-47 314.6 27.5 296 69-397 38-345 (357)
16 4aow_A Guanine nucleotide-bind 100.0 1.5E-41 5E-46 306.9 33.2 297 64-397 29-339 (340)
17 1nr0_A Actin interacting prote 100.0 5.5E-42 1.9E-46 333.3 32.6 316 65-405 139-579 (611)
18 1erj_A Transcriptional repress 100.0 6.4E-41 2.2E-45 308.4 35.2 296 70-396 61-390 (393)
19 1nr0_A Actin interacting prote 100.0 2.4E-41 8.1E-46 328.8 33.3 310 60-394 177-610 (611)
20 3zwl_B Eukaryotic translation 100.0 2.4E-40 8.2E-45 302.3 36.2 301 64-403 23-354 (369)
21 3dm0_A Maltose-binding peripla 100.0 1.5E-40 5.3E-45 328.4 34.6 293 66-394 375-692 (694)
22 3i2n_A WD repeat-containing pr 100.0 1.5E-39 5.2E-44 295.7 30.4 303 66-398 11-356 (357)
23 4a11_B DNA excision repair pro 100.0 3E-38 1E-42 292.5 38.6 314 63-408 33-378 (408)
24 2ynn_A Coatomer subunit beta'; 100.0 5.3E-39 1.8E-43 285.0 32.0 263 114-411 10-275 (304)
25 1sq9_A Antiviral protein SKI8; 100.0 1.9E-38 6.4E-43 292.9 32.0 308 65-397 8-397 (397)
26 1gxr_A ESG1, transducin-like e 100.0 5.5E-38 1.9E-42 283.0 33.4 290 61-393 39-335 (337)
27 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-38 9.1E-43 289.2 30.9 299 68-399 3-365 (372)
28 2ymu_A WD-40 repeat protein; u 100.0 1.4E-37 4.7E-42 301.4 36.7 283 64-392 294-577 (577)
29 4gqb_B Methylosome protein 50; 100.0 1.4E-37 4.9E-42 279.5 32.0 254 67-355 76-334 (344)
30 2ymu_A WD-40 repeat protein; u 100.0 3.9E-37 1.3E-41 298.2 36.8 301 63-411 252-554 (577)
31 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-37 1.5E-41 274.1 33.5 295 62-405 7-306 (313)
32 4gga_A P55CDC, cell division c 100.0 6.7E-37 2.3E-41 284.3 34.6 290 75-403 107-403 (420)
33 2pm7_B Protein transport prote 100.0 1.5E-36 5.1E-41 268.3 33.8 257 66-394 2-284 (297)
34 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-37 1.5E-41 278.3 31.1 305 67-400 5-342 (351)
35 3gre_A Serine/threonine-protei 100.0 1E-37 3.6E-42 291.7 27.4 311 61-392 50-437 (437)
36 2pm9_A Protein WEB1, protein t 100.0 5.6E-38 1.9E-42 291.6 25.4 298 72-400 11-342 (416)
37 3k26_A Polycomb protein EED; W 100.0 5.9E-37 2E-41 279.5 31.5 306 67-395 12-366 (366)
38 1r5m_A SIR4-interacting protei 100.0 6.1E-37 2.1E-41 285.2 31.8 291 68-394 40-424 (425)
39 4aez_A CDC20, WD repeat-contai 100.0 1E-36 3.4E-41 281.4 32.6 295 68-403 86-388 (401)
40 1vyh_C Platelet-activating fac 100.0 1.7E-37 5.9E-42 286.9 27.4 269 114-411 105-385 (410)
41 3ow8_A WD repeat-containing pr 100.0 1E-36 3.4E-41 272.1 31.0 248 66-351 73-320 (321)
42 2pm9_A Protein WEB1, protein t 100.0 1.2E-37 4.1E-42 289.4 25.9 295 71-396 65-415 (416)
43 3v7d_B Cell division control p 100.0 2.9E-36 1E-40 284.1 35.5 298 65-408 113-435 (464)
44 3dwl_C Actin-related protein 2 100.0 4.4E-38 1.5E-42 288.3 21.7 254 67-351 5-280 (377)
45 4ggc_A P55CDC, cell division c 100.0 3.1E-36 1.1E-40 269.3 32.8 283 76-397 28-317 (318)
46 4h5i_A Guanine nucleotide-exch 100.0 1.5E-36 5.1E-41 275.9 30.5 295 74-396 15-344 (365)
47 3vl1_A 26S proteasome regulato 100.0 3.8E-36 1.3E-40 279.6 33.0 300 60-395 85-419 (420)
48 3dw8_B Serine/threonine-protei 100.0 4.2E-36 1.4E-40 281.7 32.2 303 72-394 27-445 (447)
49 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-36 1.4E-40 302.8 34.1 310 66-412 6-319 (814)
50 1yfq_A Cell cycle arrest prote 100.0 1.9E-35 6.4E-40 267.1 34.7 292 67-392 5-321 (342)
51 1got_B GT-beta; complex (GTP-b 100.0 9.2E-36 3.1E-40 268.5 32.1 263 114-412 52-318 (340)
52 4ery_A WD repeat-containing pr 100.0 1.2E-35 4.2E-40 264.7 32.0 265 112-411 18-284 (312)
53 4g56_B MGC81050 protein; prote 100.0 2.6E-36 9.1E-41 273.5 27.7 255 65-354 86-345 (357)
54 3frx_A Guanine nucleotide-bind 100.0 5.9E-36 2E-40 267.2 29.0 257 64-353 56-318 (319)
55 2j04_B YDR362CP, TAU91; beta p 100.0 3E-36 1E-40 284.3 28.0 293 67-395 201-517 (524)
56 1gxr_A ESG1, transducin-like e 100.0 4.1E-36 1.4E-40 270.7 27.2 296 71-402 7-303 (337)
57 3vl1_A 26S proteasome regulato 100.0 1.9E-36 6.4E-41 281.7 25.4 285 75-397 58-367 (420)
58 3bg1_A Protein SEC13 homolog; 100.0 2.9E-36 9.9E-41 268.8 25.4 258 67-351 7-292 (316)
59 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-35 1E-39 265.6 31.0 266 69-359 57-342 (345)
60 3iz6_a 40S ribosomal protein R 100.0 2.4E-36 8.4E-41 276.5 23.8 273 98-402 48-336 (380)
61 2pbi_B Guanine nucleotide-bind 100.0 8.3E-35 2.8E-39 263.5 32.1 263 114-411 61-331 (354)
62 3mmy_A MRNA export factor; mRN 100.0 7.2E-35 2.5E-39 265.9 31.1 298 64-394 30-345 (368)
63 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-35 3E-39 305.9 35.7 296 64-397 606-915 (1249)
64 3sfz_A APAF-1, apoptotic pepti 100.0 4E-35 1.4E-39 308.5 33.2 316 57-400 641-1039(1249)
65 1p22_A F-BOX/WD-repeat protein 100.0 2E-34 6.7E-39 269.1 32.4 285 68-404 128-423 (435)
66 2oaj_A Protein SNI1; WD40 repe 100.0 7.8E-35 2.7E-39 293.1 31.7 211 67-293 11-245 (902)
67 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-33 3.9E-38 264.8 37.0 285 65-402 110-398 (445)
68 2xzm_R RACK1; ribosome, transl 100.0 1.1E-33 3.8E-38 255.3 34.9 261 64-354 67-342 (343)
69 1erj_A Transcriptional repress 100.0 2.1E-34 7.3E-39 264.9 30.4 251 74-352 124-389 (393)
70 1pgu_A Actin interacting prote 100.0 2E-34 7E-39 281.3 31.6 311 64-410 151-588 (615)
71 3jrp_A Fusion protein of prote 100.0 6.9E-34 2.4E-38 260.5 32.8 264 65-355 3-290 (379)
72 2oaj_A Protein SNI1; WD40 repe 100.0 9.1E-35 3.1E-39 292.6 28.4 323 58-399 84-609 (902)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.3E-33 1.5E-37 260.9 35.8 290 58-395 144-442 (445)
74 1pgu_A Actin interacting prote 100.0 6.9E-34 2.3E-38 277.6 31.6 301 71-411 16-344 (615)
75 3v7d_B Cell division control p 100.0 3.4E-33 1.2E-37 263.1 32.9 298 58-392 147-460 (464)
76 2hes_X YDR267CP; beta-propelle 100.0 1.6E-33 5.5E-38 252.6 29.2 255 67-352 50-328 (330)
77 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-34 1.8E-38 263.4 25.5 289 75-397 36-344 (402)
78 3gre_A Serine/threonine-protei 100.0 5.8E-34 2E-38 266.3 23.9 290 81-405 35-369 (437)
79 3jro_A Fusion protein of prote 100.0 2.3E-33 7.8E-38 278.6 25.5 261 66-397 2-287 (753)
80 3bg1_A Protein SEC13 homolog; 100.0 1.4E-33 4.6E-38 251.5 21.0 255 112-394 8-292 (316)
81 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-32 1.2E-36 274.1 33.2 302 58-395 40-386 (814)
82 3vu4_A KMHSV2; beta-propeller 100.0 3.9E-32 1.3E-36 246.0 30.0 287 65-398 11-339 (355)
83 4aez_A CDC20, WD repeat-contai 100.0 3.7E-32 1.3E-36 250.9 30.0 263 62-362 122-390 (401)
84 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-32 1.3E-36 251.0 29.3 259 65-356 73-346 (402)
85 3dm0_A Maltose-binding peripla 100.0 3.8E-32 1.3E-36 268.5 30.3 258 65-351 422-692 (694)
86 2xyi_A Probable histone-bindin 100.0 7.5E-32 2.6E-36 250.9 30.5 271 65-397 120-412 (430)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.5E-32 2.2E-36 253.1 29.3 293 74-394 5-390 (450)
88 3k26_A Polycomb protein EED; W 100.0 7.7E-33 2.6E-37 252.3 22.3 257 72-352 68-366 (366)
89 2j04_B YDR362CP, TAU91; beta p 100.0 6.6E-33 2.2E-37 261.5 22.1 268 72-396 132-429 (524)
90 3dwl_C Actin-related protein 2 100.0 3.8E-33 1.3E-37 255.5 19.5 255 114-395 8-281 (377)
91 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-32 1.2E-36 245.6 24.9 272 80-393 43-331 (343)
92 2j04_A TAU60, YPL007P, hypothe 100.0 5.6E-32 1.9E-36 248.9 26.4 266 72-394 14-296 (588)
93 1k8k_C P40, ARP2/3 complex 41 100.0 1E-31 3.4E-36 245.5 28.1 254 114-395 5-274 (372)
94 3ei3_B DNA damage-binding prot 100.0 4.3E-32 1.5E-36 249.0 24.7 263 108-404 65-348 (383)
95 1sq9_A Antiviral protein SKI8; 100.0 4.5E-32 1.6E-36 250.1 24.7 260 112-403 11-330 (397)
96 3jrp_A Fusion protein of prote 100.0 4.6E-32 1.6E-36 248.3 24.3 257 114-397 8-289 (379)
97 3odt_A Protein DOA1; ubiquitin 100.0 7E-31 2.4E-35 234.0 31.0 262 103-407 4-267 (313)
98 1yfq_A Cell cycle arrest prote 100.0 2.1E-31 7.1E-36 240.6 26.0 259 113-411 7-299 (342)
99 3zwl_B Eukaryotic translation 100.0 1.2E-30 4.1E-35 238.0 31.3 258 113-408 28-317 (369)
100 4e54_B DNA damage-binding prot 100.0 1.8E-31 6.3E-36 248.8 25.2 260 114-403 116-395 (435)
101 4aow_A Guanine nucleotide-bind 100.0 1.5E-30 5.1E-35 234.7 30.1 260 64-354 77-339 (340)
102 1r5m_A SIR4-interacting protei 100.0 8.4E-31 2.9E-35 243.7 27.8 272 96-397 25-363 (425)
103 4gga_A P55CDC, cell division c 100.0 5.7E-30 1.9E-34 237.7 32.9 265 58-360 130-403 (420)
104 2pm7_B Protein transport prote 100.0 3.1E-30 1E-34 227.8 29.1 213 65-289 45-284 (297)
105 3i2n_A WD repeat-containing pr 100.0 1.1E-30 3.7E-35 237.3 26.9 265 69-355 61-356 (357)
106 1l0q_A Surface layer protein; 100.0 6E-30 2E-34 235.5 32.1 279 87-407 3-287 (391)
107 3dw8_B Serine/threonine-protei 100.0 1.3E-31 4.6E-36 251.0 21.0 267 116-399 27-377 (447)
108 3bws_A Protein LP49; two-domai 100.0 5.7E-30 2E-34 238.9 30.1 298 66-395 116-432 (433)
109 1l0q_A Surface layer protein; 100.0 4E-29 1.4E-33 230.0 35.0 295 62-398 21-345 (391)
110 4gq1_A NUP37; propeller, trans 100.0 4.1E-31 1.4E-35 242.8 21.1 266 71-393 87-387 (393)
111 2j04_A TAU60, YPL007P, hypothe 100.0 1E-30 3.5E-35 240.5 22.6 252 71-384 83-349 (588)
112 4a11_B DNA excision repair pro 100.0 1.6E-29 5.4E-34 233.9 29.1 287 70-394 96-404 (408)
113 4h5i_A Guanine nucleotide-exch 100.0 1.9E-29 6.5E-34 229.1 26.7 205 71-291 131-344 (365)
114 3mmy_A MRNA export factor; mRN 100.0 2.2E-29 7.5E-34 229.5 26.8 273 103-410 26-319 (368)
115 2w18_A PALB2, fancn, partner a 100.0 7.7E-29 2.6E-33 214.2 27.4 285 75-393 41-355 (356)
116 4ggc_A P55CDC, cell division c 100.0 5.3E-28 1.8E-32 215.8 32.5 260 57-354 49-317 (318)
117 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-28 4.3E-33 229.8 28.1 261 58-359 158-421 (435)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-28 1E-32 228.1 29.7 266 117-407 4-356 (450)
119 3jro_A Fusion protein of prote 100.0 1.8E-28 6.1E-33 243.5 25.1 221 63-293 43-288 (753)
120 2xyi_A Probable histone-bindin 100.0 1.8E-27 6.3E-32 221.4 29.2 217 63-291 171-411 (430)
121 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-27 4.4E-32 216.0 26.7 226 64-293 48-340 (351)
122 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-27 1.3E-31 213.3 27.3 256 100-397 3-273 (355)
123 2w18_A PALB2, fancn, partner a 100.0 3.9E-27 1.3E-31 203.6 23.1 211 63-288 101-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-27 8.6E-32 213.7 22.7 203 73-292 76-294 (343)
125 1nir_A Nitrite reductase; hemo 100.0 3E-26 1E-30 217.9 30.3 286 80-399 144-462 (543)
126 4gq1_A NUP37; propeller, trans 100.0 1.3E-26 4.4E-31 212.8 23.4 218 66-288 129-387 (393)
127 3bws_A Protein LP49; two-domai 100.0 9.5E-26 3.2E-30 210.3 29.2 298 72-406 59-401 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.7E-26 9.4E-31 211.8 24.5 296 72-408 61-399 (415)
129 1nir_A Nitrite reductase; hemo 99.9 7.4E-25 2.5E-29 208.3 32.2 322 62-404 168-523 (543)
130 1ri6_A Putative isomerase YBHE 99.9 2.9E-24 9.8E-29 193.7 29.1 285 87-397 6-312 (343)
131 3u4y_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 188.2 33.2 298 79-411 3-322 (331)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 8E-24 2.7E-28 195.4 26.4 265 67-378 111-410 (415)
133 1pby_B Quinohemoprotein amine 99.9 8E-24 2.7E-28 190.3 23.2 280 87-405 2-320 (337)
134 3vgz_A Uncharacterized protein 99.9 1.8E-22 6.3E-27 182.6 32.1 281 72-384 39-332 (353)
135 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-23 4.5E-28 209.4 25.6 283 73-395 36-413 (741)
136 2ojh_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 175.9 24.8 256 91-384 17-290 (297)
137 3hfq_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 177.2 28.0 280 94-399 14-323 (347)
138 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 174.9 28.8 264 66-355 33-307 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-22 5E-27 200.7 23.1 292 74-397 82-437 (706)
140 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-23 1.9E-27 204.3 19.2 291 75-395 18-393 (723)
141 1ri6_A Putative isomerase YBHE 99.9 1.7E-21 5.9E-26 175.4 27.3 252 70-355 34-313 (343)
142 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-21 4.3E-26 176.8 25.4 283 78-405 4-335 (349)
143 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-22 1.1E-26 198.2 23.0 297 61-397 15-393 (706)
144 1k32_A Tricorn protease; prote 99.9 3.7E-21 1.2E-25 198.2 27.3 288 72-397 294-639 (1045)
145 1pby_B Quinohemoprotein amine 99.9 3.7E-21 1.3E-25 172.8 21.4 247 75-363 35-321 (337)
146 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-21 1.2E-25 192.0 22.0 289 75-396 110-460 (741)
147 3o4h_A Acylamino-acid-releasin 99.9 7E-21 2.4E-25 184.2 23.3 269 73-395 21-315 (582)
148 1k32_A Tricorn protease; prote 99.9 1.3E-20 4.5E-25 194.1 26.3 294 65-395 195-502 (1045)
149 3vgz_A Uncharacterized protein 99.9 6.1E-20 2.1E-24 166.0 26.4 257 116-407 39-315 (353)
150 3scy_A Hypothetical bacterial 99.9 2.2E-19 7.6E-24 162.9 29.9 283 88-399 15-343 (361)
151 3hfq_A Uncharacterized protein 99.9 1.4E-19 4.6E-24 163.4 27.5 269 70-357 36-324 (347)
152 3pe7_A Oligogalacturonate lyas 99.9 6.1E-20 2.1E-24 168.4 24.1 297 64-394 21-381 (388)
153 2ojh_A Uncharacterized protein 99.9 2.6E-20 8.8E-25 163.9 20.8 208 67-293 35-261 (297)
154 1xfd_A DIP, dipeptidyl aminope 99.9 6.8E-20 2.3E-24 182.1 23.8 295 63-383 47-427 (723)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.2E-19 1.8E-23 160.6 24.7 284 89-396 5-342 (365)
156 1z68_A Fibroblast activation p 99.8 6.9E-20 2.3E-24 181.9 19.5 286 78-395 20-391 (719)
157 3scy_A Hypothetical bacterial 99.8 3.9E-18 1.3E-22 154.7 29.2 278 72-373 48-359 (361)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 7.5E-20 2.6E-24 169.3 18.0 206 73-292 36-280 (434)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 3.8E-19 1.3E-23 164.6 18.3 205 71-288 90-331 (434)
160 3o4h_A Acylamino-acid-releasin 99.8 1.6E-18 5.3E-23 167.7 19.0 237 116-399 20-278 (582)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-17 4.1E-22 165.9 25.3 289 75-397 18-402 (740)
162 3fvz_A Peptidyl-glycine alpha- 99.8 3.3E-16 1.1E-20 139.8 31.9 261 73-395 23-322 (329)
163 1z68_A Fibroblast activation p 99.8 1.3E-18 4.3E-23 172.8 17.4 308 63-398 46-446 (719)
164 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-17 1.1E-21 147.9 24.3 241 75-362 44-335 (349)
165 3c5m_A Oligogalacturonate lyas 99.8 1.1E-18 3.7E-23 160.5 14.7 296 75-397 37-386 (396)
166 3azo_A Aminopeptidase; POP fam 99.8 3.6E-17 1.2E-21 160.8 26.5 300 65-397 15-371 (662)
167 2oiz_A Aromatic amine dehydrog 99.8 5.8E-17 2E-21 146.4 24.3 290 94-402 29-343 (361)
168 1q7f_A NHL, brain tumor CG1071 99.8 5.4E-16 1.8E-20 135.7 29.6 200 71-288 27-236 (286)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-17 1.4E-21 148.0 23.0 257 73-353 39-342 (365)
170 4a5s_A Dipeptidyl peptidase 4 99.8 4E-17 1.4E-21 162.1 20.8 262 118-404 17-362 (740)
171 3pe7_A Oligogalacturonate lyas 99.7 7.8E-16 2.7E-20 140.9 24.2 264 100-398 14-332 (388)
172 2z2n_A Virginiamycin B lyase; 99.7 7.9E-14 2.7E-18 122.6 35.9 287 69-397 10-297 (299)
173 2dg1_A DRP35, lactonase; beta 99.7 1E-15 3.6E-20 137.0 23.5 276 74-384 6-298 (333)
174 2oiz_A Aromatic amine dehydrog 99.7 3E-15 1E-19 135.1 24.9 269 67-378 45-360 (361)
175 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-14 7.2E-19 136.2 31.3 280 87-396 168-478 (567)
176 3e5z_A Putative gluconolactona 99.7 1.9E-14 6.5E-19 126.5 29.1 204 66-288 20-244 (296)
177 2xdw_A Prolyl endopeptidase; a 99.7 1.5E-14 5.2E-19 143.0 30.4 202 71-285 122-361 (710)
178 3azo_A Aminopeptidase; POP fam 99.7 3E-15 1E-19 147.1 24.1 210 67-292 61-327 (662)
179 3dsm_A Uncharacterized protein 99.7 7.9E-15 2.7E-19 130.7 20.1 269 94-403 15-309 (328)
180 2bkl_A Prolyl endopeptidase; m 99.7 3.4E-14 1.1E-18 140.1 25.5 200 71-288 118-347 (695)
181 1qks_A Cytochrome CD1 nitrite 99.6 1.4E-12 4.9E-17 123.6 34.9 311 75-404 198-547 (567)
182 2qc5_A Streptogramin B lactona 99.6 4.4E-12 1.5E-16 111.4 35.2 282 72-394 18-299 (300)
183 3dsm_A Uncharacterized protein 99.6 3E-13 1E-17 120.5 27.7 250 75-361 45-310 (328)
184 2gop_A Trilobed protease; beta 99.6 7.4E-14 2.5E-18 125.7 23.3 258 74-394 15-330 (347)
185 1rwi_B Serine/threonine-protei 99.6 1.9E-13 6.4E-18 118.3 24.3 196 75-289 25-221 (270)
186 1q7f_A NHL, brain tumor CG1071 99.6 4E-13 1.4E-17 117.3 26.0 202 71-290 74-280 (286)
187 2mad_H Methylamine dehydrogena 99.6 1.5E-12 5.2E-17 117.5 29.6 284 97-401 48-356 (373)
188 3no2_A Uncharacterized protein 99.6 4.3E-13 1.5E-17 115.9 24.2 189 87-294 6-199 (276)
189 3c5m_A Oligogalacturonate lyas 99.6 2.4E-14 8.2E-19 131.3 16.7 196 77-293 84-332 (396)
190 3sjl_D Methylamine dehydrogena 99.6 7E-13 2.4E-17 118.0 25.1 304 79-405 38-373 (386)
191 3c75_H MADH, methylamine dehyd 99.6 7.9E-13 2.7E-17 119.9 22.9 298 83-402 82-409 (426)
192 3no2_A Uncharacterized protein 99.6 1.6E-13 5.5E-18 118.6 17.4 238 130-405 5-262 (276)
193 1yr2_A Prolyl oligopeptidase; 99.6 9.6E-13 3.3E-17 130.6 25.2 282 82-397 115-443 (741)
194 2dg1_A DRP35, lactonase; beta 99.6 7.9E-12 2.7E-16 111.7 28.8 209 66-289 37-262 (333)
195 3fvz_A Peptidyl-glycine alpha- 99.5 4.8E-12 1.6E-16 112.8 25.7 214 71-289 88-321 (329)
196 2z2n_A Virginiamycin B lyase; 99.5 5.9E-11 2E-15 104.1 30.8 241 115-393 12-253 (299)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.1E-11 1.1E-15 106.8 27.9 209 69-291 13-257 (314)
198 2xdw_A Prolyl endopeptidase; a 99.5 1.5E-11 5.1E-16 121.6 27.1 194 83-290 81-320 (710)
199 2gop_A Trilobed protease; beta 99.5 6.2E-12 2.1E-16 113.0 22.3 183 74-291 59-292 (347)
200 1yr2_A Prolyl oligopeptidase; 99.5 2E-11 6.8E-16 121.2 27.5 252 72-354 161-443 (741)
201 1xip_A Nucleoporin NUP159; bet 99.5 1E-12 3.6E-17 117.4 15.3 174 75-277 39-231 (388)
202 3hrp_A Uncharacterized protein 99.5 3.9E-11 1.4E-15 109.8 26.1 204 74-293 131-357 (409)
203 3e5z_A Putative gluconolactona 99.5 3.4E-11 1.2E-15 105.6 24.7 206 66-293 61-289 (296)
204 1rwi_B Serine/threonine-protei 99.5 1.5E-11 5.2E-16 106.2 22.1 201 73-292 66-266 (270)
205 3iuj_A Prolyl endopeptidase; h 99.4 6.7E-11 2.3E-15 116.4 25.6 206 71-289 126-358 (693)
206 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.7E-14 95.3 30.8 240 116-393 18-258 (300)
207 3hrp_A Uncharacterized protein 99.4 2.4E-10 8.3E-15 104.6 26.2 243 118-393 131-408 (409)
208 2bkl_A Prolyl endopeptidase; m 99.4 5E-11 1.7E-15 117.5 22.4 195 82-291 76-305 (695)
209 3dr2_A Exported gluconolactona 99.4 8.8E-10 3E-14 97.0 27.7 164 67-246 38-224 (305)
210 1yiq_A Quinohemoprotein alcoho 99.4 1.3E-10 4.3E-15 113.6 24.1 305 88-405 72-515 (689)
211 3sjl_D Methylamine dehydrogena 99.4 2.9E-10 9.8E-15 101.3 23.6 261 67-363 73-374 (386)
212 3g4e_A Regucalcin; six bladed 99.4 3E-09 1E-13 93.1 29.9 206 70-292 9-231 (297)
213 2mad_H Methylamine dehydrogena 99.4 1.5E-09 5.1E-14 97.9 28.5 243 78-359 70-357 (373)
214 2qe8_A Uncharacterized protein 99.4 1.6E-10 5.3E-15 103.6 22.0 278 74-391 17-317 (343)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 1.2E-08 4E-13 90.6 32.5 196 75-288 50-258 (326)
216 1mda_H Methylamine dehydrogena 99.3 8.5E-11 2.9E-15 104.9 18.5 288 87-405 33-356 (368)
217 1kb0_A Quinohemoprotein alcoho 99.3 3.7E-10 1.3E-14 110.1 22.8 306 88-405 79-517 (677)
218 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.2E-09 7.6E-14 94.7 25.3 201 72-290 69-299 (314)
219 1yiq_A Quinohemoprotein alcoho 99.3 9.8E-10 3.3E-14 107.4 23.6 268 88-382 123-534 (689)
220 1xip_A Nucleoporin NUP159; bet 99.3 7.2E-11 2.4E-15 105.6 13.9 154 119-292 39-193 (388)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5.1E-09 1.8E-13 95.1 26.1 270 88-404 55-346 (376)
222 1kb0_A Quinohemoprotein alcoho 99.2 2.7E-09 9.1E-14 104.1 24.8 269 88-382 130-536 (677)
223 3c75_H MADH, methylamine dehyd 99.2 8E-10 2.8E-14 100.2 18.9 247 78-359 122-409 (426)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.9E-08 9.9E-13 90.1 29.4 265 88-392 105-375 (376)
225 3dr2_A Exported gluconolactona 99.2 3.5E-09 1.2E-13 93.1 20.1 194 67-282 79-299 (305)
226 1kv9_A Type II quinohemoprotei 99.1 1.5E-08 5.2E-13 98.7 25.3 304 88-405 68-498 (668)
227 3g4e_A Regucalcin; six bladed 99.1 1.9E-08 6.6E-13 87.9 23.5 191 72-279 52-261 (297)
228 1fwx_A Nitrous oxide reductase 99.1 9.3E-09 3.2E-13 95.6 21.4 280 89-397 18-433 (595)
229 2hz6_A Endoplasmic reticulum t 99.1 4.9E-12 1.7E-16 114.3 -1.3 226 130-397 9-238 (369)
230 2ece_A 462AA long hypothetical 99.1 8.9E-09 3E-13 92.4 19.2 240 127-384 93-399 (462)
231 2hz6_A Endoplasmic reticulum t 99.1 3.4E-11 1.2E-15 108.8 3.7 182 87-293 10-195 (369)
232 2ece_A 462AA long hypothetical 99.1 6.4E-08 2.2E-12 86.9 24.3 198 83-290 93-352 (462)
233 2iwa_A Glutamine cyclotransfer 99.1 6.8E-08 2.3E-12 81.4 23.1 201 75-291 22-238 (266)
234 1fwx_A Nitrous oxide reductase 99.1 3.1E-08 1.1E-12 92.1 22.7 193 83-290 99-361 (595)
235 2ghs_A AGR_C_1268P; regucalcin 99.1 1.5E-07 5.3E-12 83.3 25.9 187 73-280 89-292 (326)
236 2qe8_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 89.9 18.8 212 71-286 64-317 (343)
237 3qqz_A Putative uncharacterize 99.0 7.3E-07 2.5E-11 74.7 26.6 214 68-288 21-251 (255)
238 1npe_A Nidogen, entactin; glyc 99.0 1.4E-06 5E-11 74.6 29.4 245 96-378 10-263 (267)
239 3nol_A Glutamine cyclotransfer 99.0 1.2E-07 4.2E-12 78.8 19.9 184 76-279 45-244 (262)
240 1mda_H Methylamine dehydrogena 99.0 1.9E-08 6.4E-13 89.8 15.6 253 64-363 57-357 (368)
241 1npe_A Nidogen, entactin; glyc 99.0 2E-06 6.7E-11 73.8 28.0 201 74-293 36-241 (267)
242 3nok_A Glutaminyl cyclase; bet 98.9 4.1E-07 1.4E-11 75.6 21.5 183 76-278 57-253 (268)
243 3iuj_A Prolyl endopeptidase; h 98.9 8.9E-08 3E-12 94.2 20.1 162 115-291 126-315 (693)
244 3hxj_A Pyrrolo-quinoline quino 98.9 2.8E-07 9.6E-12 81.8 21.4 268 72-396 58-325 (330)
245 2ad6_A Methanol dehydrogenase 98.9 2.9E-07 1E-11 87.8 22.5 267 88-382 117-523 (571)
246 3mbr_X Glutamine cyclotransfer 98.9 7.7E-07 2.6E-11 73.4 21.8 186 75-279 22-223 (243)
247 2ad6_A Methanol dehydrogenase 98.9 7.4E-07 2.5E-11 85.0 24.5 304 88-406 64-505 (571)
248 1kv9_A Type II quinohemoprotei 98.9 3.5E-07 1.2E-11 89.1 22.6 266 88-380 119-515 (668)
249 1w6s_A Methanol dehydrogenase 98.9 1E-06 3.4E-11 84.1 24.8 305 88-405 64-513 (599)
250 1flg_A Protein (quinoprotein e 98.9 3.2E-06 1.1E-10 80.7 28.0 310 87-407 70-528 (582)
251 3hxj_A Pyrrolo-quinoline quino 98.8 3E-08 1E-12 88.1 12.5 267 78-402 24-290 (330)
252 1w6s_A Methanol dehydrogenase 98.8 1.6E-06 5.6E-11 82.6 24.8 262 89-381 124-531 (599)
253 2fp8_A Strictosidine synthase; 98.8 5.6E-06 1.9E-10 73.1 26.6 191 74-277 19-246 (322)
254 1flg_A Protein (quinoprotein e 98.7 6.5E-06 2.2E-10 78.6 24.9 271 88-382 119-545 (582)
255 2iwa_A Glutamine cyclotransfer 98.7 2.6E-06 8.7E-11 71.8 19.2 206 119-352 22-237 (266)
256 1k3i_A Galactose oxidase precu 98.7 2.1E-06 7.3E-11 83.7 21.1 201 78-292 190-443 (656)
257 3nol_A Glutamine cyclotransfer 98.7 2.4E-06 8.2E-11 71.1 18.0 155 119-293 44-204 (262)
258 4a2l_A BT_4663, two-component 98.6 0.00018 6.1E-09 72.0 34.4 293 73-397 214-528 (795)
259 2p4o_A Hypothetical protein; p 98.6 6.8E-05 2.3E-09 65.5 27.8 199 74-289 32-241 (306)
260 3v64_C Agrin; beta propeller, 98.6 0.00014 4.9E-09 64.7 29.9 200 72-290 32-234 (349)
261 1ijq_A LDL receptor, low-densi 98.6 0.00012 4.1E-09 64.3 28.9 207 73-293 29-241 (316)
262 3nok_A Glutaminyl cyclase; bet 98.6 4.9E-06 1.7E-10 69.2 18.0 184 172-384 57-254 (268)
263 3v65_B Low-density lipoprotein 98.6 0.0001 3.5E-09 66.6 28.0 198 74-290 77-277 (386)
264 4hw6_A Hypothetical protein, I 98.6 4.9E-05 1.7E-09 69.8 25.4 157 119-289 140-303 (433)
265 4a2l_A BT_4663, two-component 98.6 0.0003 1E-08 70.4 33.2 291 73-397 309-616 (795)
266 3v65_B Low-density lipoprotein 98.5 0.00012 4E-09 66.3 26.7 205 73-293 115-321 (386)
267 3p5b_L Low density lipoprotein 98.5 0.00032 1.1E-08 63.7 29.7 208 72-293 110-323 (400)
268 3v9f_A Two-component system se 98.5 0.00019 6.6E-09 71.6 30.6 296 73-397 257-570 (781)
269 3v64_C Agrin; beta propeller, 98.5 0.00021 7.3E-09 63.6 27.5 205 73-293 72-278 (349)
270 2xe4_A Oligopeptidase B; hydro 98.5 2.3E-05 7.8E-10 77.6 22.7 198 75-288 175-398 (751)
271 3tc9_A Hypothetical hydrolase; 98.5 5.1E-05 1.7E-09 69.7 23.3 156 119-289 138-300 (430)
272 2p4o_A Hypothetical protein; p 98.5 0.00044 1.5E-08 60.3 28.4 227 118-384 32-276 (306)
273 2fp8_A Strictosidine synthase; 98.5 9.7E-05 3.3E-09 65.1 24.0 198 74-289 80-312 (322)
274 3qqz_A Putative uncharacterize 98.5 0.00016 5.4E-09 60.5 23.7 166 114-289 23-203 (255)
275 3kya_A Putative phosphatase; s 98.4 0.00021 7.3E-09 65.8 25.8 161 119-288 140-339 (496)
276 3mbr_X Glutamine cyclotransfer 98.4 2.1E-05 7.3E-10 64.8 17.3 186 171-384 22-223 (243)
277 3sov_A LRP-6, low-density lipo 98.4 0.00056 1.9E-08 59.9 26.5 205 74-293 35-241 (318)
278 2xe4_A Oligopeptidase B; hydro 98.3 0.00013 4.5E-09 72.2 24.1 159 119-290 175-354 (751)
279 3p5b_L Low density lipoprotein 98.3 0.0019 6.6E-08 58.5 31.3 180 95-290 91-277 (400)
280 3m0c_C LDL receptor, low-densi 98.3 0.00099 3.4E-08 65.7 28.6 208 72-293 422-635 (791)
281 1ijq_A LDL receptor, low-densi 98.2 0.002 6.7E-08 56.4 30.7 180 96-290 10-195 (316)
282 4hw6_A Hypothetical protein, I 98.2 0.00036 1.2E-08 64.0 23.0 198 75-288 140-372 (433)
283 3v9f_A Two-component system se 98.2 0.0053 1.8E-07 61.2 35.5 298 74-397 115-438 (781)
284 3sov_A LRP-6, low-density lipo 98.2 0.0026 8.7E-08 55.7 26.2 181 95-290 12-197 (318)
285 3amr_A 3-phytase; beta-propell 98.2 0.0023 8E-08 55.7 25.2 195 87-289 41-262 (355)
286 3tc9_A Hypothetical hydrolase; 98.1 0.00084 2.9E-08 61.6 23.1 153 75-245 138-300 (430)
287 2p9w_A MAL S 1 allergenic prot 98.1 0.00087 3E-08 57.8 20.8 209 76-288 15-263 (334)
288 3kya_A Putative phosphatase; s 98.1 0.0023 8E-08 58.9 24.7 204 75-292 140-411 (496)
289 3m0c_C LDL receptor, low-densi 98.1 0.011 3.6E-07 58.5 30.7 180 95-290 403-589 (791)
290 1n7d_A LDL receptor, low-densi 98.1 2.5E-05 8.4E-10 76.4 12.1 205 74-293 406-617 (699)
291 4a0p_A LRP6, LRP-6, low-densit 98.0 0.012 4.2E-07 56.6 30.5 183 94-291 13-198 (628)
292 1k3i_A Galactose oxidase precu 98.0 8E-05 2.7E-09 72.6 14.3 209 76-292 245-499 (656)
293 4a0p_A LRP6, LRP-6, low-densit 98.0 0.012 4E-07 56.7 28.7 202 74-293 37-240 (628)
294 1n7d_A LDL receptor, low-densi 97.9 0.00014 4.9E-09 71.0 14.5 231 95-361 385-623 (699)
295 2p9w_A MAL S 1 allergenic prot 97.9 0.00057 2E-08 58.9 15.8 168 116-289 11-214 (334)
296 2xzh_A Clathrin heavy chain 1; 97.9 0.0093 3.2E-07 51.0 28.4 271 95-400 48-337 (365)
297 3s94_A LRP-6, low-density lipo 97.9 0.0065 2.2E-07 58.4 24.7 206 73-293 39-246 (619)
298 3ei3_A DNA damage-binding prot 97.7 0.056 1.9E-06 55.9 33.9 190 73-278 553-755 (1158)
299 3amr_A 3-phytase; beta-propell 97.7 0.018 6.1E-07 50.2 22.6 205 130-360 40-272 (355)
300 2xbg_A YCF48-like protein; pho 97.7 0.019 6.4E-07 50.4 22.8 196 74-288 122-320 (327)
301 2xbg_A YCF48-like protein; pho 97.6 0.028 9.4E-07 49.3 30.1 279 73-393 35-320 (327)
302 3sre_A PON1, serum paraoxonase 97.6 0.032 1.1E-06 49.2 23.5 200 67-280 43-287 (355)
303 1bpo_A Protein (clathrin); cla 97.5 0.051 1.7E-06 48.6 30.7 271 95-400 47-336 (494)
304 3s94_A LRP-6, low-density lipo 97.4 0.12 4E-06 49.8 26.0 202 74-291 349-552 (619)
305 3pbp_A Nucleoporin NUP82; beta 97.3 0.08 2.7E-06 47.3 21.5 150 130-286 32-208 (452)
306 3ei3_A DNA damage-binding prot 97.3 0.042 1.4E-06 56.8 22.1 198 75-287 830-1059(1158)
307 2vpj_A Kelch-like protein 12; 97.2 0.087 3E-06 45.4 21.0 149 130-293 15-187 (301)
308 2xn4_A Kelch-like protein 2; s 97.0 0.092 3.2E-06 45.3 19.3 105 87-202 17-135 (302)
309 3ii7_A Kelch-like protein 7; p 97.0 0.11 3.6E-06 45.0 19.1 105 87-202 13-129 (306)
310 3pbp_A Nucleoporin NUP82; beta 97.0 0.18 6.1E-06 45.1 20.0 153 82-242 29-208 (452)
311 2ism_A Putative oxidoreductase 96.9 0.21 7.3E-06 44.1 25.0 151 118-278 31-221 (352)
312 2ism_A Putative oxidoreductase 96.9 0.22 7.4E-06 44.1 23.5 159 66-234 23-221 (352)
313 3ii7_A Kelch-like protein 7; p 96.9 0.042 1.5E-06 47.5 15.6 188 87-292 57-274 (306)
314 2vpj_A Kelch-like protein 12; 96.9 0.055 1.9E-06 46.7 16.2 188 87-292 64-280 (301)
315 2xn4_A Kelch-like protein 2; s 96.8 0.07 2.4E-06 46.0 16.4 191 84-292 61-278 (302)
316 3a9g_A Putative uncharacterize 96.8 0.27 9.2E-06 43.5 22.7 150 118-277 29-215 (354)
317 2xzh_A Clathrin heavy chain 1; 96.7 0.25 8.5E-06 42.5 26.3 199 79-293 72-293 (365)
318 1xi4_A Clathrin heavy chain; a 96.7 0.34 1.2E-05 50.3 21.7 269 95-397 47-333 (1630)
319 1bpo_A Protein (clathrin); cla 96.6 0.36 1.2E-05 43.3 25.8 200 78-293 70-292 (494)
320 1tl2_A L10, protein (tachylect 96.6 0.2 6.9E-06 40.3 16.5 187 87-288 5-206 (236)
321 3a9g_A Putative uncharacterize 96.6 0.36 1.2E-05 42.7 23.1 157 66-233 21-215 (354)
322 3sre_A PON1, serum paraoxonase 96.5 0.25 8.4E-06 43.5 17.8 145 138-290 81-252 (355)
323 2g8s_A Glucose/sorbosone dehyd 96.4 0.47 1.6E-05 41.9 26.2 165 62-232 6-214 (353)
324 1tl2_A L10, protein (tachylect 96.4 0.11 3.6E-06 41.9 13.0 151 75-239 42-203 (236)
325 1cru_A Protein (soluble quinop 96.4 0.6 2.1E-05 42.8 20.6 120 62-188 15-162 (454)
326 2woz_A Kelch repeat and BTB do 96.2 0.51 1.7E-05 40.9 21.0 145 87-247 17-185 (318)
327 4asc_A Kelch repeat and BTB do 96.2 0.3 1E-05 42.4 16.7 187 87-292 6-223 (315)
328 1zgk_A Kelch-like ECH-associat 96.1 0.13 4.4E-06 44.5 13.9 189 87-292 72-289 (308)
329 4asc_A Kelch repeat and BTB do 96.1 0.19 6.5E-06 43.6 14.8 190 84-292 45-279 (315)
330 2be1_A Serine/threonine-protei 96.1 0.01 3.5E-07 51.8 6.4 194 88-293 12-234 (339)
331 1xi4_A Clathrin heavy chain; a 96.0 0.25 8.5E-06 51.3 16.6 201 79-295 71-294 (1630)
332 2woz_A Kelch repeat and BTB do 96.0 0.36 1.2E-05 41.9 16.2 149 83-247 55-232 (318)
333 3das_A Putative oxidoreductase 96.0 0.73 2.5E-05 40.3 24.0 155 117-277 31-219 (347)
334 1zgk_A Kelch-like ECH-associat 96.0 0.24 8.1E-06 42.8 14.9 188 87-292 26-242 (308)
335 1cru_A Protein (soluble quinop 95.9 0.89 3.1E-05 41.7 18.9 170 118-291 27-260 (454)
336 2be1_A Serine/threonine-protei 95.6 0.077 2.6E-06 46.3 9.8 150 130-291 10-184 (339)
337 2uvk_A YJHT; unknown function, 95.5 0.65 2.2E-05 41.0 16.0 140 140-293 168-345 (357)
338 2uvk_A YJHT; unknown function, 95.4 0.55 1.9E-05 41.5 15.2 96 84-190 19-128 (357)
339 2zwa_A Leucine carboxyl methyl 95.3 0.62 2.1E-05 45.5 16.2 197 87-292 399-637 (695)
340 3das_A Putative oxidoreductase 94.9 1.7 6E-05 38.0 19.0 116 66-188 24-158 (347)
341 3sbq_A Nitrous-oxide reductase 94.3 3.4 0.00012 38.5 25.2 269 88-383 72-452 (638)
342 2zwa_A Leucine carboxyl methyl 93.6 2.6 8.7E-05 41.2 16.3 156 84-247 451-636 (695)
343 3ott_A Two-component system se 93.5 6.4 0.00022 38.8 29.7 197 73-292 62-262 (758)
344 2g8s_A Glucose/sorbosone dehyd 93.1 4.2 0.00015 35.7 20.8 62 216-277 272-340 (353)
345 3ott_A Two-component system se 91.7 11 0.00037 37.2 30.3 193 74-291 146-353 (758)
346 3sbq_A Nitrous-oxide reductase 89.1 3.9 0.00013 38.1 11.0 74 75-149 324-408 (638)
347 4gq2_M Nucleoporin NUP120; bet 88.9 14 0.00049 37.4 16.3 40 119-159 237-276 (950)
348 2wg3_C Hedgehog-interacting pr 88.7 11 0.00038 34.5 14.1 109 172-280 16-159 (463)
349 3s25_A Hypothetical 7-bladed b 86.5 14 0.00049 31.4 19.1 173 83-291 23-217 (302)
350 3q6k_A 43.2 kDa salivary prote 86.0 18 0.00061 32.0 16.1 146 141-290 124-306 (381)
351 3q6k_A 43.2 kDa salivary prote 85.2 19 0.00066 31.8 22.9 174 73-246 86-306 (381)
352 4gq2_M Nucleoporin NUP120; bet 84.7 5.6 0.00019 40.4 10.7 36 260-295 236-271 (950)
353 3s25_A Hypothetical 7-bladed b 81.9 23 0.0008 30.1 18.1 175 79-289 58-254 (302)
354 3b7f_A Glycosyl hydrolase, BNR 81.5 28 0.00096 30.8 19.8 121 119-243 116-259 (394)
355 3b7f_A Glycosyl hydrolase, BNR 80.7 30 0.001 30.6 21.0 190 88-286 24-258 (394)
356 2wg3_C Hedgehog-interacting pr 78.9 39 0.0013 30.9 14.5 117 118-236 14-159 (463)
357 3uc1_A DNA gyrase subunit A; D 77.2 35 0.0012 29.4 21.7 161 73-246 94-279 (327)
358 4fhn_B Nucleoporin NUP120; pro 76.8 75 0.0026 33.1 16.5 35 261-295 239-273 (1139)
359 4hvt_A Ritya.17583.B, post-pro 73.9 69 0.0023 31.2 21.4 166 120-291 131-330 (711)
360 3f7f_A Nucleoporin NUP120; nuc 72.6 10 0.00036 36.5 7.7 82 260-352 222-305 (729)
361 3l6v_A GYRA, DNA gyrase subuni 72.4 51 0.0017 29.0 24.4 155 126-290 4-180 (370)
362 4fhn_B Nucleoporin NUP120; pro 69.6 20 0.00067 37.4 9.7 41 119-160 239-279 (1139)
363 3f7f_A Nucleoporin NUP120; nuc 69.1 29 0.00098 33.6 9.8 38 119-159 223-260 (729)
364 1sqj_A OXG-RCBH, oligoxylogluc 66.6 1E+02 0.0036 30.4 21.1 160 73-236 14-190 (789)
365 3no0_A DNA gyrase subunit A; D 65.8 58 0.002 27.2 22.9 202 74-289 24-245 (276)
366 4hvt_A Ritya.17583.B, post-pro 63.5 1.1E+02 0.0039 29.7 19.2 203 75-292 130-383 (711)
367 1sqj_A OXG-RCBH, oligoxylogluc 60.7 1.3E+02 0.0046 29.6 15.7 160 116-280 13-190 (789)
368 3qhy_B Beta-lactamase inhibito 59.8 76 0.0026 26.5 17.7 182 75-290 64-246 (282)
369 3kci_A Probable E3 ubiquitin-p 58.7 96 0.0033 27.3 26.2 161 119-290 54-241 (389)
370 3qhy_B Beta-lactamase inhibito 51.3 1.1E+02 0.0036 25.6 21.9 146 117-290 23-168 (282)
371 1suu_A DNA gyrase subunit A; t 48.5 1.3E+02 0.0043 25.7 24.3 193 87-290 9-231 (312)
372 2cn3_A Xyloglucanase, beta-1,4 48.0 2.1E+02 0.0071 28.0 15.9 115 119-236 24-153 (737)
373 3zwu_A Alkaline phosphatase PH 45.0 80 0.0027 29.9 8.3 59 120-187 478-548 (592)
374 3zwu_A Alkaline phosphatase PH 45.0 81 0.0028 29.9 8.4 60 75-136 477-548 (592)
375 3no0_A DNA gyrase subunit A; D 44.2 1.4E+02 0.0047 24.9 20.1 162 73-246 67-246 (276)
376 4a9v_A PHOX; hydrolase, beta-p 42.6 1.3E+02 0.0044 28.3 9.1 61 118-187 476-548 (592)
377 1zi0_A DNA gyrase subunit A; b 40.9 1.7E+02 0.0057 24.8 23.0 192 87-289 4-225 (307)
378 1q47_A Semaphorin 3A; beta pro 40.0 85 0.0029 28.9 7.6 69 217-285 406-487 (495)
379 4a9v_A PHOX; hydrolase, beta-p 37.7 1.6E+02 0.0056 27.7 9.0 61 74-136 476-548 (592)
380 3kci_A Probable E3 ubiquitin-p 36.7 2.2E+02 0.0075 25.0 23.7 202 75-290 54-293 (389)
381 1a6b_B Momulv, zinc finger pro 34.7 11 0.00037 20.7 0.5 19 3-21 12-30 (40)
382 3a0f_A Xyloglucanase; beta-pro 33.9 3.5E+02 0.012 26.5 17.9 162 115-281 18-203 (763)
383 3a0f_A Xyloglucanase; beta-pro 32.5 3.7E+02 0.013 26.4 23.3 163 72-237 19-203 (763)
384 3uc1_A DNA gyrase subunit A; D 30.4 2.6E+02 0.0089 24.0 27.5 164 117-290 94-279 (327)
385 1zvt_A Topoisomerase IV subuni 28.6 2.4E+02 0.0083 23.1 15.7 148 131-289 3-162 (256)
386 3mez_B Mannose-specific lectin 27.6 1.5E+02 0.0052 20.4 7.0 54 340-395 31-84 (113)
387 1wp5_A Topoisomerase IV; broke 27.5 2.9E+02 0.0099 23.6 21.3 192 87-290 6-225 (323)
388 1zi0_A DNA gyrase subunit A; b 27.4 2.8E+02 0.0096 23.4 24.3 152 130-290 3-176 (307)
389 4gz8_A Semaphorin-3A; multi-do 26.3 1.4E+02 0.0048 28.8 6.8 58 228-285 430-495 (667)
390 3nvq_A Semaphorin-7A; beta-pro 24.8 1.5E+02 0.0052 27.9 6.6 59 228-286 381-445 (590)
391 1u6p_A GAG polyprotein; MLV, A 23.5 23 0.00079 21.1 0.6 18 4-21 26-43 (56)
392 3ol2_B Plexin-B1; beta-propell 23.5 1.9E+02 0.0066 26.8 7.0 69 216-285 388-461 (528)
393 3al9_A Plexin-A2; beta-propell 23.4 84 0.0029 29.4 4.6 70 216-285 401-476 (539)
394 3al9_A Plexin-A2; beta-propell 21.9 1.8E+02 0.0061 27.2 6.5 69 172-241 402-476 (539)
395 1q47_A Semaphorin 3A; beta pro 20.6 2.4E+02 0.0081 26.0 7.0 59 182-241 422-487 (495)
396 2cn3_A Xyloglucanase, beta-1,4 20.5 5.9E+02 0.02 24.7 22.4 113 75-189 24-152 (737)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-45 Score=339.31 Aligned_cols=294 Identities=19% Similarity=0.287 Sum_probs=249.5
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.|.......+.+|.++|++++|+|++ .+|++|+.||.|+|||+.++.....+ .+|...|.+++|+|+ +.+|++|+.|
T Consensus 95 ~~~~~~~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~-~~~l~sgs~D 171 (410)
T 1vyh_C 95 IPRPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS-GKLLASCSAD 171 (410)
T ss_dssp CCCSSCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred ccCCCceEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC-CCEEEEEeCC
Confidence 34445567899999999999999999 68999999999999999998888777 789999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
++|++||+.+++.+..+..+.. .|.+++|+|++.+|++|+.|+.|++||++++.... ....+...|.+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~h~~---------~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~---~~~~h~~~v~~ 239 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMHGHDH---------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK---TFTGHREWVRM 239 (410)
T ss_dssp SCCCEEETTSSCEEECCCCCSS---------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEE
T ss_pred CeEEEEeCCCCceeEEEcCCCC---------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeCCCccEEE
Confidence 9999999999888877754433 39999999999999999999999999999876542 34456668999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC--------------------CCEEEEeeC
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS--------------------GSKILTTSQ 279 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~ 279 (449)
+.++| ++.+|++|+.|+.|++||+++..... ...+|...|.+++|+|+ +.+|++|+.
T Consensus 240 ~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 240 VRPNQ-DGTLIASCSNDQTVRVWVVATKECKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCceee--EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 99999 99999999999999999998754422 22378999999999996 679999999
Q ss_pred CCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEE
Q 013086 280 DNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 358 (449)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 358 (449)
|+.|++||++++..... +.++. ....+.|+|+ |.+++ +|+.|+.|++||+.+++++..
T Consensus 317 D~~i~iwd~~~~~~~~~---------~~~h~~~v~~v~~~~~---------g~~l~---s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMT---------LVGHDNWVRGVLFHSG---------GKFIL---SCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp TSEEEEEETTTTEEEEE---------EECCSSCEEEEEECSS---------SSCEE---EEETTTEEEEECCTTSCCCEE
T ss_pred CCeEEEEECCCCceEEE---------EECCCCcEEEEEEcCC---------CCEEE---EEeCCCeEEEEECCCCceEEE
Confidence 99999999988765221 11111 2246889988 77777 789999999999999999999
Q ss_pred EecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 359 VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 359 ~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
+.+|. ..+.++ +|+|++.+|++|+ ||.|+||+++
T Consensus 376 ~~~h~-~~v~~l-~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 376 LNAHE-HFVTSL-DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCS-SCEEEE-EECSSSSCEEEEETTSEEEEEC--
T ss_pred EcCCC-CcEEEE-EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 98877 678888 9999999999999 9999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=322.72 Aligned_cols=293 Identities=16% Similarity=0.240 Sum_probs=243.3
Q ss_pred cccceeeeccCccEEEEEEeCCC---CcEEEEEcCCCcEEEEeCcCCeeeE-EEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTN---NHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~---~~~l~t~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
....+.+++|.+.|++++|+|++ ..+|+||+.|++|+||++....... ....+|...|.+++|+++ +.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~ 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAASSSL 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEEEET
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEEEeC
Confidence 33456778999999999999852 2589999999999999998765432 233789999999999999 999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|++|++||+.+++.+..+..+... +.+++|+|++++|++++.+|.|++||+.++.... ....+...+.
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~---------~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~---~~~~~~~~v~ 168 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVD---------AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY---SLDTRGKFIL 168 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTC---------CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE---EEECSSSCEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCcc---------EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE---EecCCCceEE
Confidence 999999999999988877654432 7889999999999999999999999999876532 3445556899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+++|+| ++++|++|+.||.|++||+++++.... ..+|...|.+++|+|++++|++++.|+.|++||+++++...
T Consensus 169 ~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~--- 242 (321)
T 3ow8_A 169 SIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG--- 242 (321)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---
Confidence 999999 999999999999999999987543222 23688999999999999999999999999999998765421
Q ss_pred cceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 299 EIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 299 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
.+..+. ....++|+|+ |.+++ +++.|++|++||+.+++++..+.+|. ..+.++ +|+|++
T Consensus 243 ------~~~~h~~~v~~~~~sp~---------~~~l~---s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v-~~s~~g 302 (321)
T 3ow8_A 243 ------TLSGHASWVLNVAFCPD---------DTHFV---SSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGV-KYNGNG 302 (321)
T ss_dssp ------EECCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEEETTTTEEEEEECCCS-SCEEEE-EECTTS
T ss_pred ------EEcCCCCceEEEEECCC---------CCEEE---EEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEE-EECCCC
Confidence 111222 2347899998 66666 78999999999999999999998876 788888 999999
Q ss_pred cEEeecC-CCeEEEEcCC
Q 013086 378 DVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~ 394 (449)
++|++++ ||.|+|||..
T Consensus 303 ~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCeEEEEeCC
Confidence 9999999 9999999963
No 3
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-44 Score=337.92 Aligned_cols=319 Identities=27% Similarity=0.448 Sum_probs=242.9
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
.....+|...|+||+|+|.++.+||+|+.||.|+|||+.+......+ ..+|.+.|++|+|+|.++.+|++++.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34667899999999999976679999999999999999876544433 36799999999999865889999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
||++++........+ .....+.+++|+|++.+|++|+.||.|++||++..... ....|...|.+++|+|
T Consensus 192 wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~----~~~~h~~~v~~v~~~p 260 (435)
T 4e54_B 192 QDFKGNILRVFASSD-------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW----NLRMHKKKVTHVALNP 260 (435)
T ss_dssp EETTSCEEEEEECCS-------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC----CSBCCSSCEEEEEECT
T ss_pred eeccCCceeEEeccC-------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE----EEecccceEEeeeecC
Confidence 999876544333221 11223788999999999999999999999999754322 2344566899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
....+|++|+.|+.|++||+++......+.. .+|...|++++|+|++.+|++++.||.|+|||+.++.... ....+.
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~ 338 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL--GLIPHP 338 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE--EECCCC
T ss_pred CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce--EEeccc
Confidence 4556899999999999999987665444332 3689999999999999999999999999999999876532 111222
Q ss_pred CCCCccccceeeeeccCCCCCceEE--EcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAV--IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
.........+...|+|......+.. .+.+++ ..+..++.|++||..+++.+..+..++...+.++.+|+|+|++|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la 416 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS--CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCC--SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEE--EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence 2333444456677887643222111 122222 245667789999999999999998777788888768999999999
Q ss_pred ecCCCeEEEEcCCCchhh
Q 013086 382 SGSSRSIFIWRPKEKSEL 399 (449)
Q Consensus 382 s~sdg~i~iw~~~~~~~~ 399 (449)
+|+|+.|+||++++++..
T Consensus 417 sg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 417 SAMGYHILIWSQQEARTR 434 (435)
T ss_dssp EECSSEEEECCCC-----
T ss_pred EEcCCcEEEEECCcCeee
Confidence 999999999999998753
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=324.71 Aligned_cols=314 Identities=16% Similarity=0.214 Sum_probs=236.6
Q ss_pred ccceeeeccCc-cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee--EEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 64 VNCAVIRYHSR-RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 64 ~~~~~~~~h~~-~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.++..+.+|.+ .|.+++|+|+| ++||+|+.|+.|+|||+.+.... ..+..+|...|.+++|+|+ +++|++++.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEEEECCC
Confidence 35678899988 99999999999 68999999999999999887543 3334689999999999999 99999999999
Q ss_pred eEEEEeCCCCce--eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 141 TVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 141 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++++||+..+.. ...+..+.. .|.+++|+|++++|++++.|+.|++||+..............+...|.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~---------~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHEN---------EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred cEEEEEccCCCeEEEEEccCCCC---------CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 999999987743 444443332 399999999999999999999999999987654433334556667899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+++|+| ++.+|++++.|+.|++||++...........+|...|.+++|+|++++|++++.|+.|++||...........
T Consensus 155 ~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 155 HVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 999999 9999999999999999998764332223334799999999999999999999999999999975432211100
Q ss_pred c--------ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce--------EEEEEecC
Q 013086 299 E--------IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--------LVAEVMDP 362 (449)
Q Consensus 299 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~--------~~~~~~~~ 362 (449)
. ...............++|+|+ +.+++ +++.|+.|++|+...+. ........
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------~~~l~---s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQL---------TGALA---TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECTT---------TCCEE---EEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEecC---------CCEEE---EEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 0 000000001223457888887 45555 67889999999987542 12222233
Q ss_pred ccceeceeeecCCCC-cEEeecC-CCeEEEEcCCCchhhhhh
Q 013086 363 NITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEKSELVEQ 402 (449)
Q Consensus 363 ~~~~v~~v~~~~~~~-~~l~s~s-dg~i~iw~~~~~~~~~~~ 402 (449)
|...|.++ +|+|++ .+||+|+ ||.|++|++.+++.....
T Consensus 302 h~~~V~~v-~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 302 HSQDVNCV-AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSSCEEEE-EECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccCcEeEe-EEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 44788888 999998 4999999 999999999998866544
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5e-44 Score=322.55 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=241.3
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
......|.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.....+ ..|...|.+++|+|+ +++|++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS-GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT-SSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC-CCEEEEEeCCCeE
Confidence 34567899999999999999999 68999999999999999998877776 679999999999999 9999999999999
Q ss_pred EEEeCCCCc----eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 143 SCTDLETGL----ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 143 ~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++|++.++. ....+..+. ..+.++.|++++. +++++.|+.|++||+.++.... ....+...|.
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~---~~~~h~~~v~ 188 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHT---------GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT---TFTGHTGDVM 188 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCS---------SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE---EECCCSSCEE
T ss_pred EEEECccCCCcceeEEEecCCC---------ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE---EEcCCCCceE
Confidence 999998763 223333322 2389999998765 8899999999999999876442 3445666899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+++|+| ++.+|++|+.|+.|++||+++..... ...+|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus 189 ~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--- 262 (340)
T 1got_B 189 SLSLAP-DTRLFVSGACDASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262 (340)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE---
Confidence 999999 99999999999999999998754322 223689999999999999999999999999999998765321
Q ss_pred cceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCC
Q 013086 299 EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 299 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
....... .....+.|+|+ |++++ +|+.|+.|++||+.+++.+..+.+|. ..+.++ +|+|++
T Consensus 263 ----~~~~~~~~~~v~~~~~s~~---------g~~l~---~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~-~~s~dg 324 (340)
T 1got_B 263 ----TYSHDNIICGITSVSFSKS---------GRLLL---AGYDDFNCNVWDALKADRAGVLAGHD-NRVSCL-GVTDDG 324 (340)
T ss_dssp ----EECCTTCCSCEEEEEECTT---------SSEEE---EEETTSEEEEEETTTCCEEEEEECCS-SCEEEE-EECTTS
T ss_pred ----EEccCCcccceEEEEECCC---------CCEEE---EECCCCeEEEEEcccCcEeeEeecCC-CcEEEE-EEcCCC
Confidence 1111111 12347889998 77777 78999999999999999999998887 788888 999999
Q ss_pred cEEeecC-CCeEEEEc
Q 013086 378 DVLASGS-SRSIFIWR 392 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~ 392 (449)
.+|++|+ ||.|+|||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999 99999997
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-43 Score=315.35 Aligned_cols=292 Identities=18% Similarity=0.239 Sum_probs=242.9
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.++|.+|.+.|++++|+|++ .+|++|+.||.|+|||+.++.....+ ..|..+|.+++|+|+ +++|++|+.|++|++|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred EEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC-CCEEEEECCCCEEEEE
Confidence 47899999999999999999 68999999999999999998887777 679999999999999 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|+.+++.+..+..+... |.+++|+|++.+|++|+.|+.|++||++++..... ....+...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDY---------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp ETTTCCEEEEEECCSSC---------EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--EECCCCSCEEEEEECTT
T ss_pred ECCCCcEEEEEeCCCCc---------EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--hhcccCCcEEEEEECCC
Confidence 99999998888765543 99999999999999999999999999987644322 34456668999999996
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
++.+|++|+.|+.|++||+++......+ ..++...+..+.|+| ++.+|++++.|+.|++||++++++...
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~------- 223 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT------- 223 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEE-ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcccee-ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-------
Confidence 6789999999999999999865443222 225667899999987 778999999999999999988765221
Q ss_pred CCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc--EE
Q 013086 304 HDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD--VL 380 (449)
Q Consensus 304 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--~l 380 (449)
+.++. ....+.|+|+ +.+++ +|+.|++|++||+.+++.+..+..+. ..+.++ +|+|++. ++
T Consensus 224 --~~~h~~~v~~~~~~p~---------~~~l~---s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 287 (304)
T 2ynn_A 224 --LEGHMSNVSFAVFHPT---------LPIII---SGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCI-ATHPTGRKNYI 287 (304)
T ss_dssp --EECCSSCEEEEEECSS---------SSEEE---EEETTSCEEEEETTTCCEEEEECCSS-SSEEEE-EECTTCGGGCE
T ss_pred --eCCCCCCEEEEEECCC---------CCEEE---EEcCCCeEEEEECCCCceeeeccCCC-ccEEEE-EECCCCCceEE
Confidence 11222 2246789998 66666 78999999999999999999998776 667777 8888875 57
Q ss_pred eecCCCeEEEEcCCC
Q 013086 381 ASGSSRSIFIWRPKE 395 (449)
Q Consensus 381 ~s~sdg~i~iw~~~~ 395 (449)
++|+|..+.+|++..
T Consensus 288 asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 288 ASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEETTEEEEEECC-
T ss_pred EEecCCceEEEEecc
Confidence 888877788888765
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-44 Score=329.08 Aligned_cols=317 Identities=19% Similarity=0.234 Sum_probs=245.2
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.....+.++|.+|.+.|++++|+|++ ++|++|+.|++|+|||+.++.....+ ..|...|.+++|+|+ +++|++|+.|
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~-g~~las~~~d 129 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN-GQSVACGGLD 129 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT-SSEEEECCSS
T ss_pred cceeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC-CCEEEEeeCC
Confidence 34456778999999999999999999 68999999999999999998887777 689999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEE--eecCCCc
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAIL--IHRKGSK 216 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~ 216 (449)
+.+++||+.+...............+ +...+.++.|.|++ ..|++|+.|+.|++||+.++........ ...+...
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~g--h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTG--HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCC--CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CcEEEEECCCCccccCCccceeeccC--CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 99999999764321100000000111 12348888999974 5799999999999999998765421100 1345568
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 217 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
|.+++|++.++++|++|+.|+.|++||++.... ......+|...|.+++|+|++++|++++.||.|++||+++++....
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 999999887889999999999999999974322 1222347999999999999999999999999999999998765321
Q ss_pred CccceecCCCCc-cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe---cCccceeceeee
Q 013086 297 SREIVHSHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DPNITTISPVNK 372 (449)
Q Consensus 297 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~v~~ 372 (449)
.... ...... ......++|+|+ |++++ +|+.|+.|++||+.+++.+..+. ..|...|.++ +
T Consensus 287 ~~~~--~~~~~~~~~~v~~~~~s~~---------g~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l-~ 351 (380)
T 3iz6_a 287 YNRE--PDRNDNELPIVTSVAFSIS---------GRLLF---AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL-G 351 (380)
T ss_dssp ECCC--CSSSCCSSCSCSEEEECSS---------SSEEE---EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE-E
T ss_pred eccc--ccccccccCceEEEEECCC---------CCEEE---EEECCCCEEEEECCCCceEEEEecccCCCCCceEEE-E
Confidence 1100 000011 111347889998 77777 78899999999999999888773 3344788888 9
Q ss_pred cCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 373 LHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 373 ~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
|+|+|++|++|+ ||.|+||++...+
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999 9999999998654
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-43 Score=316.01 Aligned_cols=293 Identities=16% Similarity=0.247 Sum_probs=236.7
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-----eeEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
....+|.+|.+.|++++|+|++.++|++|+.|++|++|++.... ....+ .+|...|.+++|+|+ +.+|++++.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d-g~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD-GAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT-SSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC-CCEEEEEeC
Confidence 34568999999999999999776799999999999999986422 23333 789999999999999 999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|++|++||+.+++....+..+... |.+++|+|++.++++++.|+.|++||++... ......+...+.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~----~~~~~~h~~~v~ 152 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSD---------VMSVDIDKKASMIISGSRDKTIKVWTIKGQC----LATLLGHNDWVS 152 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSC---------EEEEEECTTSCEEEEEETTSCEEEEETTSCE----EEEECCCSSCEE
T ss_pred CCEEEEEECCCCCeeEEEccCCCc---------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEeccCCcEE
Confidence 999999999999988888765443 9999999999999999999999999997532 224455666899
Q ss_pred EEEEcCC-----CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 219 GLHCNPI-----QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 219 ~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+++++|. ++..|++++.|+.|++||+++.+. .....+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999983 234899999999999999986443 222347999999999999999999999999999999987764
Q ss_pred CCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC-------ccce
Q 013086 294 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP-------NITT 366 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~ 366 (449)
.... ........++|+|+ +.+++ ++ .+..+++|++..+..+..+..+ +...
T Consensus 231 ~~~~---------~~~~~v~~~~~sp~---------~~~la---~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 231 MYTL---------SAQDEVFSLAFSPN---------RYWLA---AA-TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEE---------ECCSCEEEEEECSS---------SSEEE---EE-ETTEEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred EEEe---------cCCCcEEEEEEcCC---------CCEEE---EE-cCCCcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 2211 11223457899998 55555 23 3455999999998888777533 2244
Q ss_pred eceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 367 ISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
+.++ +|+|+|++|++|+ ||.|+||++.++
T Consensus 289 v~~~-~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 289 AVSL-AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEE-EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeEE-EECCCCCEEEEeecCceEEEEEEeec
Confidence 6667 8999999999999 999999998764
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-43 Score=317.37 Aligned_cols=292 Identities=20% Similarity=0.299 Sum_probs=240.1
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.....|.+|.+.|++++|+|++ ++|++|+.||+|+|||..+......+ ..|...|.+++|+|+ +.+|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~-g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS-GCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT-SSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC-CCEEEEeeCCCCEE
Confidence 3467899999999999999999 68999999999999999888777766 568899999999999 99999999999999
Q ss_pred EEeCCCCc------eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 144 CTDLETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 144 iwd~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
+|++.... ....+..+. ..|.+++|+|++..|++++.|+.|++||+.+++... ....+...|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---~~~~h~~~v 199 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHT---------NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---SFHGHGADV 199 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECS---------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCE
T ss_pred EEEEeccccccccccceeeeccC---------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE---EEcCCCCCe
Confidence 99986542 222333332 239999999999999999999999999999876542 345566689
Q ss_pred EEEEEcCC-CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 218 VGLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 218 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
.+++++|. ++++|++|+.||.|++||+++++... ....|...|.+++|+|++.+|++++.|+.|++||+++++....
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ--AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 99999883 35899999999999999998754422 2236899999999999999999999999999999987643210
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 376 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~ 376 (449)
.. ..........+.|+|+ |.+++ +|+.|+.|++||+.+++.+..+.+|. ..+.++ +|+|+
T Consensus 278 -----~~-~~~~~~~~~~~~~s~~---------g~~l~---~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l-~~spd 337 (354)
T 2pbi_B 278 -----YS-KESIIFGASSVDFSLS---------GRLLF---AGYNDYTINVWDVLKGSRVSILFGHE-NRVSTL-RVSPD 337 (354)
T ss_dssp -----EC-CTTCCSCEEEEEECTT---------SSEEE---EEETTSCEEEEETTTCSEEEEECCCS-SCEEEE-EECTT
T ss_pred -----Ec-CCCcccceeEEEEeCC---------CCEEE---EEECCCcEEEEECCCCceEEEEECCC-CcEEEE-EECCC
Confidence 00 0011112346789988 77777 78899999999999999999888776 788888 99999
Q ss_pred CcEEeecC-CCeEEEEc
Q 013086 377 DDVLASGS-SRSIFIWR 392 (449)
Q Consensus 377 ~~~l~s~s-dg~i~iw~ 392 (449)
+++|++|+ ||.|+||+
T Consensus 338 g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 338 GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEcCCCCEEecC
Confidence 99999999 99999996
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-42 Score=307.72 Aligned_cols=299 Identities=20% Similarity=0.348 Sum_probs=244.0
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.|.......+.+|.+.|++++|+|++ ++|++|+.||.|++|++.++.....+ .+|...|.+++|+|+ +++|++++.|
T Consensus 10 ~~~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~~~d 86 (312)
T 4ery_A 10 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD-SNLLVSASDD 86 (312)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCCceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC-CCEEEEECCC
Confidence 34455567899999999999999999 68999999999999999988877766 689999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
+.|++||+++++.+..+..+.. .+.+++|+|+++++++++.|+.|++||+++++... ....+...|.+
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~ 154 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSA 154 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEE
T ss_pred CEEEEEECCCCcEEEEEcCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEE
Confidence 9999999999998888765543 39999999999999999999999999999876432 34455668999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
++|+| ++.+|++++.||.|++||+++.+....+ ...+...+..++|+|++++|++++.|+.|++||+++++.....
T Consensus 155 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 230 (312)
T 4ery_A 155 VHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-- 230 (312)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence 99999 9999999999999999999875432222 1246678999999999999999999999999999877642210
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcE
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 379 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 379 (449)
..+ ......+...+++.. +.+++ +|+.|+.|++||+.+++.+..+.+|. ..+..+ +|+|++++
T Consensus 231 --~~~--~~~~~~~~~~~~~~~--------~~~l~---sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~-~~~p~~~~ 293 (312)
T 4ery_A 231 --TGH--KNEKYCIFANFSVTG--------GKWIV---SGSEDNLVYIWNLQTKEIVQKLQGHT-DVVIST-ACHPTENI 293 (312)
T ss_dssp --CSS--CCSSSCCCEEEECSS--------SCEEE---ECCTTSCEEEEETTTCCEEEEECCCS-SCEEEE-EECSSSSE
T ss_pred --Eec--CCceEEEEEEEEeCC--------CcEEE---EECCCCEEEEEECCCchhhhhhhccC-CcEEEE-eecCcCCc
Confidence 011 111111123333321 55565 78999999999999999999998887 677788 89999999
Q ss_pred EeecC---CCeEEEEcCC
Q 013086 380 LASGS---SRSIFIWRPK 394 (449)
Q Consensus 380 l~s~s---dg~i~iw~~~ 394 (449)
|++++ |+.|++|+.+
T Consensus 294 l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 294 IASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECTTTCCEEEEECC
T ss_pred eEEEEccCCccEEEecCC
Confidence 99874 8999999864
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-42 Score=314.04 Aligned_cols=297 Identities=18% Similarity=0.228 Sum_probs=230.4
Q ss_pred cccceeeeccCccEEEEEE-----eC-CCCcEEEEEcCCCcEEEEeCcCCe------eeEEEecccCCceeEEEEeeCCC
Q 013086 63 QVNCAVIRYHSRRVTCLEF-----HP-TNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTND 130 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~-----~~-~~~~~l~t~~~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~ 130 (449)
..+...|.+|.+.|++++| ++ ++ .+|++|+.|++|+|||+.... .......+|...|.+++|+|+ +
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~ 88 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-N 88 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-T
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-C
Confidence 3456789999999999999 76 66 689999999999999987532 222333789999999999999 9
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 210 (449)
.++++++.|++|++||+++++....+..+... |.+++|+|++++|++++.|+.|++||+...... .....
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~---------v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~ 158 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE---------VYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEK 158 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSC---------EEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTT
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc---------EEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecc
Confidence 99999999999999999999988887665443 999999999999999999999999999742211 11011
Q ss_pred ecCCCceEEEEEcCCCC----------CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 211 HRKGSKVVGLHCNPIQP----------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 211 ~~~~~~v~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
..+...|.+++|+| ++ .+|++++.|+.|++||... . ......+|...|.+++|+|++++|++++.|
T Consensus 159 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~--~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 159 ENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q--IRYTFKAHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp TSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E--EEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC-c--eeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence 24556899999999 54 7899999999999999532 1 122233799999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEE--E
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA--E 358 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~--~ 358 (449)
|.|++||+....... .... .......++|+|+ +.+++ ++.|+.|++||+.+++... .
T Consensus 235 g~v~iwd~~~~~~~~--~~~~------~~~~v~~v~~sp~---------~~~la----~~~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 235 KKLLIWDILNLTYPQ--REFD------AGSTINQIAFNPK---------LQWVA----VGTDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp CEEEEEESSCCSSCS--EEEE------CSSCEEEEEECSS---------SCEEE----EEESSCEEEEESSSCCSCSEEE
T ss_pred CeEEEEECCCCcccc--eeec------CCCcEEEEEECCC---------CCEEE----EECCCCEEEEEeCCCCCCceEE
Confidence 999999995433211 1110 1112457899998 45544 3457889999998876543 3
Q ss_pred Eec----------CccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 359 VMD----------PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 359 ~~~----------~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+.. .+...+.++ +|+|+|++|++|+ ||.|++|++.+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSL-AWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEE-EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEE-EECCCCCeEEEecCCceEEEEEEEccC
Confidence 331 233567777 9999999999999 9999999987764
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-42 Score=307.71 Aligned_cols=304 Identities=16% Similarity=0.215 Sum_probs=220.8
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecc-cCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNI-HSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.++..|.+|.+.|++++|+++ +|++|+.|+.|++||+.... ....+..+ |...|.+++|+|+ +++|++++.|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~ 80 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDS 80 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTS
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCC
Confidence 356789999999999999986 79999999999999998753 33334234 9999999999999 99999999999
Q ss_pred eEEEEeCCCC-------ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCC-CccceEEeec
Q 013086 141 TVSCTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS-RSGEAILIHR 212 (449)
Q Consensus 141 ~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 212 (449)
+|++||+... +....+..+.. .|.+++|+|++++|++++.|+.|++||++... ..........
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~---------~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHEN---------EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC-------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCC---------cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 9999998542 23333433322 39999999999999999999999999995432 2222233455
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~ 290 (449)
+...|.+++|+| ++.+|++|+.|+.|++||..+..........+|...|.+++|+|+ +.+|++++.|+.|++||+..
T Consensus 152 h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 152 HSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 667899999999 999999999999999999875322112223379999999999998 77999999999999999976
Q ss_pred CCCCCCCccceecCCCC--ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce--EEEEE-ecCccc
Q 013086 291 GNLDSPSREIVHSHDFN--RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--LVAEV-MDPNIT 365 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~~ 365 (449)
+...... .......+. .......++|++. + +++ +++.|+.|++||..+++ ..... .+|...
T Consensus 231 ~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s~~---------~-~l~---s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 231 DDEDDQQ-EWVCEAILPDVHKRQVYNVAWGFN---------G-LIA---SVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp ECTTSCE-EEEEEEECCSCCSSCEEEEEECTT---------S-CEE---EEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred CCccccc-eeEEeeecccccccceEEEEEcCC---------C-EEE---EEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 5321100 000001111 1123356788854 2 333 57889999999998874 33333 344422
Q ss_pred eeceeeecCC--CCcEEeecC-CCeEEEEcCCCc
Q 013086 366 TISPVNKLHP--RDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 366 ~v~~v~~~~~--~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
.+.++ +|+| ++++|++|+ ||.|+||++++.
T Consensus 297 ~v~~v-~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 297 EINVV-KWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp CEEEE-EEC-----CCEEEEETTSEEEEEEC---
T ss_pred eEEEE-EEecCCCceEEEEecCCCcEEEEEeccC
Confidence 77888 8999 789999999 999999998653
No 13
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-41 Score=308.84 Aligned_cols=314 Identities=26% Similarity=0.417 Sum_probs=243.7
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.......+.+|.+.|++++|+|+++++|++|+.||.|+|||+.+......+. .+|...|.+++|+|+++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 3445678899999999999999985689999999999999999877766653 369999999999994379999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
.|++||+.+ .....+..... ....+.+++|+|++.+|++++.|+.|++||++ +.. ......+...|.++
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~---~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDS------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE---IFKEKLHKAKVTHA 210 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCC------SSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE---EEEEECSSSCEEEE
T ss_pred EEEEEECCC-CceEEEeccCC------CCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE---EEEeccCCCcEEEE
Confidence 999999986 44444433221 12349999999999999999999999999994 322 23445566789999
Q ss_pred EEcCCCCC-EEEEEeCCCeEEEEEccCCCC-CCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 221 HCNPIQPE-LLLSCGNDHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 221 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
+|+| ++. +|++++.|+.|++||+++... ...+...+|...|.+++|+| ++.+|++++.|+.|++||+++++.....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 9999 776 999999999999999987543 23344447999999999999 9999999999999999999988764321
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEE--EcceecccCCCCCCcceEEEECCCceEEEEEecCcc-ceeceeeecC
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAV--IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI-TTISPVNKLH 374 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~v~~~~ 374 (449)
. .+......+...+...|+|......+.. .|++ +++.|+.|++||+.+++.+..+.++.. ..+..+ +|+
T Consensus 290 ~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~-~~s 361 (383)
T 3ei3_B 290 I--IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN-KFS 361 (383)
T ss_dssp E--ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE-EEC
T ss_pred c--cccccccccccceEEeccCCCCceEEEecCCccc-----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE-EEe
Confidence 1 1122222333444556666532222211 1433 578999999999999999999987643 445554 899
Q ss_pred CCCcEEeecCCCeEEEEcCCC
Q 013086 375 PRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 375 ~~~~~l~s~sdg~i~iw~~~~ 395 (449)
|++++|++|+||.|+||++++
T Consensus 362 ~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 362 PTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp TTSSEEEEEETTEEEEEECC-
T ss_pred cCccEEEEecCCcEEEEecCC
Confidence 999999999999999999875
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-42 Score=308.94 Aligned_cols=291 Identities=11% Similarity=0.118 Sum_probs=219.4
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC------------CeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
..|...|.+++|+||| ++|++++ |+++++||... ...... ..|...|.+++|+|+ ..|++|+
T Consensus 27 ~~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d--~~l~~~s 100 (344)
T 4gqb_B 27 ACMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE--RGILVAS 100 (344)
T ss_dssp SSCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT--TEEEEEE
T ss_pred ccccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC--CeEEEEE
Confidence 3577789999999999 6788777 77888887321 011112 236778999999996 4788999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
.||+|++||+.+++........... +...|.+++|+|++++|++|+.|+.|++||+.+++... ....|...|
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~-----H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~---~~~~h~~~V 172 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYE-----HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---SYRAHAAQV 172 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCE
T ss_pred CCCEEEEEeccCCCceeEeeccccC-----CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---EEcCcCCce
Confidence 9999999999998766554321111 11249999999999999999999999999999876542 345566799
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
.+++|+|.+..+|++++.|+.|++||+++.+....+....+...+.+++|+| ++++|++|+.||.|++||+++++.+..
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999999445689999999999999998866544443335667899999999 567899999999999999998876431
Q ss_pred CccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 297 SREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
. ..+. ....++|+|+. .++++ +|+.|++|+|||+.+++++ .+.+|. ..|.++ +|+|
T Consensus 253 ~---------~~h~~~v~~v~fsp~g--------~~~la---sgs~D~~i~vwd~~~~~~~-~~~~H~-~~V~~v-~~sp 309 (344)
T 4gqb_B 253 S---------AVHSQCVTGLVFSPHS--------VPFLA---SLSEDCSLAVLDSSLSELF-RSQAHR-DFVRDA-TWSP 309 (344)
T ss_dssp E---------ECCSSCEEEEEECSSS--------SCCEE---EEETTSCEEEECTTCCEEE-EECCCS-SCEEEE-EECS
T ss_pred E---------cCCCCCEEEEEEccCC--------CeEEE---EEeCCCeEEEEECCCCcEE-EEcCCC-CCEEEE-EEeC
Confidence 1 1111 23478999983 24555 6889999999999998865 456665 788888 9999
Q ss_pred CCc-EEeecC-CCeEEEEcCCCch
Q 013086 376 RDD-VLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 376 ~~~-~l~s~s-dg~i~iw~~~~~~ 397 (449)
+++ +|++|+ ||.|++|++.+..
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEEcCCCeEEEEECCCCC
Confidence 986 567888 9999999998754
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-42 Score=314.57 Aligned_cols=296 Identities=10% Similarity=0.132 Sum_probs=221.1
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcC------CCcEEEEeCcCCeee---EEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDK------KGQVGVWDFYKVSEK---IVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~------d~~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
...|+..|++++|+||| ++|++|+. |+.|++|+..++... .....+|...|.+++|+|+ + .+++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-K-GILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-T-EEEEEETT
T ss_pred cccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-C-CEEEEECC
Confidence 35799999999999999 68999987 778999988765422 1122458899999999997 5 56678889
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
|+|++||+.+++.......... .+...|.+++|+|++++|++++.|+.|++||+.+++... ....+...|.+
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~-----~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~---~~~~h~~~v~~ 186 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKY-----EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK---SYNAHSSEVNC 186 (357)
T ss_dssp SCEEEC--------CCCCEEEC-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEE
T ss_pred CEEEEeeccccceeEEEeeccC-----CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEE
Confidence 9999999998876543322111 122349999999999999999999999999999876542 34456668999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
++|+|....++++++.|+.|++||+++.+....+....+...+.+++|+|+ +.+|++|+.|+.|++||+++++.....
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~- 265 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS- 265 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-
Confidence 999994446899999999999999998766555544467788999999996 578999999999999999887653211
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC-CC
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RD 377 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 377 (449)
... ......++|+|+. +++++ +|+.|++|+|||+.+++++..+ +|. ..|.++ +|+| ++
T Consensus 266 -----~~~--~~~v~~l~~sp~~--------~~~la---sgs~D~~i~iwd~~~~~~~~~~-~H~-~~V~~v-afsP~d~ 324 (357)
T 4g56_B 266 -----AVH--SQNITGLAYSYHS--------SPFLA---SISEDCTVAVLDADFSEVFRDL-SHR-DFVTGV-AWSPLDH 324 (357)
T ss_dssp -----CCC--SSCEEEEEECSSS--------SCCEE---EEETTSCEEEECTTSCEEEEEC-CCS-SCEEEE-EECSSST
T ss_pred -----ecc--ceeEEEEEEcCCC--------CCEEE---EEeCCCEEEEEECCCCcEeEEC-CCC-CCEEEE-EEeCCCC
Confidence 111 1123478899973 24555 6889999999999999887665 454 788888 9998 79
Q ss_pred cEEeecC-CCeEEEEcCCCch
Q 013086 378 DVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~~~~ 397 (449)
.+|++|+ ||.|++|++.+..
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TEEEEEETTSCEEEEECC---
T ss_pred CEEEEEcCCCeEEEEECCCCC
Confidence 9999999 9999999997644
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-41 Score=306.92 Aligned_cols=297 Identities=15% Similarity=0.231 Sum_probs=235.7
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee----eEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
....+|+||.+.|++|+|+|++.++|+||+.|++|+|||+.+... ......+|...|.+++|+|+ +.+|++++.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-CCEEEEEccc
Confidence 345689999999999999998657999999999999999876432 22333789999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
+.|++|+................ +..+.+++++.+|++++.|+.+++||+...... ......+...+..
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~--~~~~~~~~~~v~~ 176 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKD---------VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY--TVQDESHSEWVSC 176 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSC---------EEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSSCSSCEEE
T ss_pred ccceEEeecccceeeeecCCCCc---------eeEEEEeecCccceeecCCCeEEEEEeCCCceE--EEEeccccCcccc
Confidence 99999999988777666544332 788899999999999999999999998765432 1223345568999
Q ss_pred EEEcCCC-CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
++|++.. ..++++++.|+.|++||+++.+.. ....+|...|++++|+|++++|++++.|+.|++||+++++....
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-- 252 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK--TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT-- 252 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCcee--eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee--
Confidence 9998732 357889999999999999875442 22237999999999999999999999999999999987654221
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec--------Cccceecee
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD--------PNITTISPV 370 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~v~~v 370 (449)
+........+.|+|+ +.+++ ++.|+.|++||+.++..+..+.. .+...+.++
T Consensus 253 -------~~~~~~v~~~~~~~~---------~~~~~----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 253 -------LDGGDIINALCFSPN---------RYWLC----AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp -------EECSSCEEEEEECSS---------SSEEE----EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred -------ecCCceEEeeecCCC---------Cceee----ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence 111222346778886 44443 56789999999999888777653 234678888
Q ss_pred eecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 371 NKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+|+|++++|++|+ ||.|+||++.+|.
T Consensus 313 -~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 313 -AWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -EECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -EECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8999999999999 9999999999986
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.5e-42 Score=333.26 Aligned_cols=316 Identities=13% Similarity=0.220 Sum_probs=244.6
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
+...+.+|...|++++|+|+++.+|++|+.|++|++||..+.+....+ .+|...|++++|+|+ +++|++++.|++|++
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd-g~~las~s~D~~i~l 216 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD-GSLFASTGGDGTIVL 216 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC-CCEEEEEECCCcEEE
Confidence 456788999999999999998557999999999999999888777766 789999999999999 999999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce-----------------
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA----------------- 207 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------- 207 (449)
||+.+++....+..... ....+...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 217 wd~~~g~~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSL--KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp EETTTCCEEEECBCTTS--SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred EECCCCcEeeeeccccc--cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence 99999988776632100 11122335999999999999999999999999999876432211
Q ss_pred -----------------------EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce-----------
Q 013086 208 -----------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL----------- 253 (449)
Q Consensus 208 -----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------- 253 (449)
.....|...|.+++|+| ++++|++++.|+.|++||+.+......+
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence 11234666899999999 9999999999999999998754211000
Q ss_pred ---------------------------------------------------------------------eecCCCCcEEE
Q 013086 254 ---------------------------------------------------------------------CDLPHKRVVNS 264 (449)
Q Consensus 254 ---------------------------------------------------------------------~~~~~~~~v~~ 264 (449)
....|...+.+
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 453 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 453 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence 00012345788
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcc
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
++|+|+|++|++|+.|+.|++||+.++.... ... .........++|+|+ |++++ +++.|++
T Consensus 454 va~spdg~~lasgs~D~~v~lwd~~~~~~~~-----~~~--~~h~~~v~~v~fspd---------g~~la---s~s~d~~ 514 (611)
T 1nr0_A 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSE-----VKT--IVHPAEITSVAFSNN---------GAFLV---ATDQSRK 514 (611)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEE-----EEE--EECSSCEEEEEECTT---------SSEEE---EEETTSC
T ss_pred EEEeCCCCEEEEeCCCCeEEEEEccCCceee-----eec--cCCCCceEEEEECCC---------CCEEE---EEcCCCC
Confidence 9999999999999999999999997653210 011 111223457899998 77887 7899999
Q ss_pred eEEEECCC-ceEEEE-EecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchh-h-hhhhcc
Q 013086 345 IDFIDITT-GQLVAE-VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE-L-VEQKEE 405 (449)
Q Consensus 345 i~iwd~~~-~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~-~-~~~~~~ 405 (449)
|++||+.+ ++.+.. +...|...|.++ +|+|+|++||+|+ |+.|+||++.++.. . ..+.+|
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v-~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACV-SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEE-EECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 99999987 665443 233244788888 9999999999999 99999999988752 2 345555
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-41 Score=308.36 Aligned_cols=296 Identities=19% Similarity=0.247 Sum_probs=230.5
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccC------------------CceeEEEEeeCCCC
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS------------------CIVNNIRFNPTNDG 131 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~------------------~~v~~~~~~~~~~~ 131 (449)
.+|.+.|.+++|+|+| ++||+|+ ++.++||++.++.....+. .|. ..|++++|+|+ ++
T Consensus 61 ~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~ 136 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GK 136 (393)
T ss_dssp EECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTT-SS
T ss_pred cCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCC-CC
Confidence 3799999999999999 6888887 6899999999887766652 232 24999999999 99
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
+|++|+.|+.|++||+.+++....+..+.. .|.+++|+|++.+|++++.|+.|++||+++++... ..
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~----~~ 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ---------DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL----TL 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCC---------CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE----EE
Confidence 999999999999999999988877765543 39999999999999999999999999999876432 22
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee-----ecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-----DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
.....+.+++|+|.++.+|++|+.|+.|++||+++......+. ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 2344799999999788999999999999999998754322221 13688999999999999999999999999999
Q ss_pred eCCCCCCCCCCccc---eecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 287 DSIFGNLDSPSREI---VHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 287 d~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
|+++.......... .....+.++ .....++|+|+ +.+++ +|+.|+.|++||+.+++.+..+.+|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------~~~l~---sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN---------DEYIL---SGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGG---------GCEEE---EEETTSEEEEEETTTCCEEEEEECC
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC---------CCEEE---EEeCCCeEEEEECCCCeEEEEECCC
Confidence 99875432211000 000011111 12346788887 77777 7899999999999999999999888
Q ss_pred ccceeceeeecC------CCCcEEeecC-CCeEEEEcCCCc
Q 013086 363 NITTISPVNKLH------PRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 363 ~~~~v~~v~~~~------~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
. ..+.++ +|+ |++++|++|+ ||.|+||++...
T Consensus 352 ~-~~v~~v-~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 352 R-NSVISV-AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp S-SCEEEE-EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred C-CCEEEE-EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 7 667777 555 5789999999 999999998653
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-41 Score=328.83 Aligned_cols=310 Identities=13% Similarity=0.157 Sum_probs=240.6
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec------ccCCceeEEEEeeCCCCeE
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN------IHSCIVNNIRFNPTNDGTV 133 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l 133 (449)
.+...++..+.+|.+.|++++|+|+| ++|++|+.|++|+|||+.++.....+.. +|...|.+++|+|+ +++|
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l 254 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKI 254 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEE
T ss_pred CCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-CCEE
Confidence 34455677899999999999999999 6899999999999999998877766633 79999999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecCCCCC----------------------------------CCCCcccceeEEEEec
Q 013086 134 YAASSDGTVSCTDLETGLALSLMNVNPNGW----------------------------------HGPRTWRMLYGMDINP 179 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~i~~~~~~~ 179 (449)
++++.|++|++||+.+++....+....... ....+...|.+++|+|
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 999999999999999988776554321000 0012234599999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCCCccce-------------------E--------------------------------
Q 013086 180 EKGVVLVADNFGFLYLVDARTNSRSGEA-------------------I-------------------------------- 208 (449)
Q Consensus 180 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------~-------------------------------- 208 (449)
++++|++++.|+.|++||+.++...... .
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 9999999999999999998764321000 0
Q ss_pred ----------------------------EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCC
Q 013086 209 ----------------------------LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR 260 (449)
Q Consensus 209 ----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (449)
....+...+.+++|+| ++++|++|+.|+.|++||+...... .+...+|..
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~-~~~~~~h~~ 492 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPA 492 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEE-EEEEEECSS
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCcee-eeeccCCCC
Confidence 0001123578899999 9999999999999999999753221 122246899
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCccceecCCCC-ccccceeeeeccCCCCCceEEEcceecccCC
Q 013086 261 VVNSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFN-RHLTPFRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 261 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
.|++++|+|+|++|++++.|+.|++||+.+ +++... .... .......++|+|+ |++++ +
T Consensus 493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-------~~~~~H~~~V~~v~fspd---------g~~la---s 553 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-------NSWTFHTAKVACVSWSPD---------NVRLA---T 553 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-------CCCCCCSSCEEEEEECTT---------SSEEE---E
T ss_pred ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee-------eeeeecccceeEEEECCC---------CCEEE---E
Confidence 999999999999999999999999999976 433211 0111 1223457999999 88887 7
Q ss_pred CCCCcceEEEECCCce-EE-EEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 339 GAALHPIDFIDITTGQ-LV-AEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 339 ~~~d~~i~iwd~~~~~-~~-~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
|+.|++|++||+.++. .+ ..+.+|....+.++ +|+|+++ |++++ |++|++|++.
T Consensus 554 gs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v-~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 554 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTE-EEEEETTSCEEEEECC
T ss_pred EECCCcEEEEECCCcccccchhhccCcccCeeEE-EEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999998875 33 44555535788888 8999998 88988 9999999973
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=302.30 Aligned_cols=301 Identities=14% Similarity=0.132 Sum_probs=246.4
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.....|.+|.+.|++++|+|++ ++|++|+.||.|++||+.++.....+ .+|...|.+++|+|+ +++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF-TKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence 3446799999999999999999 68999999999999999998888777 689999999999998 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEECCCCCCccceE--------Ee
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAI--------LI 210 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--------~~ 210 (449)
+||+.+++....+.... .+.+++|+|++.++++++.+ +.|.+||+.......... ..
T Consensus 100 iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPV----------PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEETTTCCEEEEEECSS----------CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EEECCCCcEEEEeecCC----------CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 99999999888876321 39999999999999999999 999999998765432221 12
Q ss_pred ecCC--CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 211 HRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 211 ~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
..+. ..+.+++|+| ++.+|++++.||.|++||+++... .+.. ..|...|.+++|+|++.+|++++.|+.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 170 ITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp ECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 2222 2799999999 999999999999999999986211 2222 26889999999999999999999999999999
Q ss_pred CCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc--------------ceEEEECCCc
Q 013086 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH--------------PIDFIDITTG 353 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~--------------~i~iwd~~~~ 353 (449)
+++++..... ........+.|+|+ +.+++ .++.++ .+++||..++
T Consensus 247 ~~~~~~~~~~---------~~~~~~~~~~~~~~---------~~~l~---~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 247 VSTLQVLKKY---------ETDCPLNTAVITPL---------KEFII---LGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TTTCCEEEEE---------ECSSCEEEEEECSS---------SSEEE---EEECCC-------------CEEEEEETTTC
T ss_pred CCCCceeeee---------cCCCCceeEEecCC---------CceEE---EeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9887653211 12222346888888 44444 233333 7999999999
Q ss_pred eEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhh
Q 013086 354 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 354 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~ 403 (449)
+.+..+.+|. ..+.++ +|+|++++|++++ ||.|++|++.++.....+.
T Consensus 306 ~~~~~~~~~~-~~v~~~-~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 306 EEIGRVQGHF-GPLNTV-AISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp CEEEEEECCS-SCEEEE-EECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred cchhheeccc-CcEEEE-EECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 9999998887 778888 8999999999999 9999999999877554443
No 21
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-40 Score=328.37 Aligned_cols=293 Identities=16% Similarity=0.198 Sum_probs=232.6
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
...+++|.+.|++++|++++..+|+||+.|++|+||++.+.. .......+|...|.+++|+|+ +++|++|+.||+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCc
Confidence 356899999999999999876799999999999999997632 122233789999999999999 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
|++||+.++.....+..+... |.+++|+|++++|++++.|+.|++||+..............|...|.+++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~---------v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKD---------VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSC---------EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred EEEEECCCCcceeEEeCCCCC---------EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence 999999999988887665443 99999999999999999999999999865322110001123556799999
Q ss_pred EcCCCC--CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 222 CNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 222 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
|+| ++ ..|++++.|+.|++||+++.+.. ....+|...|++++|+|++++|++++.||.|++||+++++.....
T Consensus 525 ~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~--~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~-- 599 (694)
T 3dm0_A 525 FSP-NTLQPTIVSASWDKTVKVWNLSNCKLR--STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-- 599 (694)
T ss_dssp ECS-CSSSCEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--
T ss_pred EeC-CCCcceEEEEeCCCeEEEEECCCCcEE--EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--
Confidence 999 54 68999999999999999864432 222379999999999999999999999999999999887653211
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc---------------
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI--------------- 364 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 364 (449)
........++|+|+ +.+++ ++.++.|++||+.+++.+..+..+..
T Consensus 600 -------~~~~~v~~~~~sp~---------~~~l~----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 600 -------EANSVIHALCFSPN---------RYWLC----AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp -------BCSSCEEEEEECSS---------SSEEE----EEETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred -------cCCCcEEEEEEcCC---------CcEEE----EEcCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 11223457889997 45544 34466799999999998887753321
Q ss_pred ---ceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 365 ---TTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 365 ---~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..+.++ +|+|+|++|++|+ ||.|+||++.
T Consensus 660 ~~~~~~~~l-~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 660 RKVIYCTSL-NWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -CCCCEEEE-EECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceeEEeeeE-EEcCCCCEEEEEcCCCeEEEEecc
Confidence 114556 8999999999999 9999999985
No 22
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=295.68 Aligned_cols=303 Identities=12% Similarity=0.148 Sum_probs=234.7
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcC---CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC--CCeEEEEeCCC
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDG 140 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg 140 (449)
...+.+|.+.|++++|+|++..++++|+. |+.|+|||+.++........+|...|.+++|+|+. +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 35678899999999999999777788877 99999999998877665545799999999999983 58999999999
Q ss_pred eEEEEeCCCCc-eeeeeecCCCCCCCCCcccceeEEE------EecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 141 TVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMD------INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 141 ~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
.|++||+.+++ ....+..+.. .|.+++ |+|++++|++++.||.|++||+++..........+..
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKE---------IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSS---------CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred eEEEEeCCCCCccEEEEEeccc---------ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 99999999887 6666654433 388885 5688999999999999999999987633322222221
Q ss_pred --CCceEEEE----EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC---CCCEEEEeeCCCcEE
Q 013086 214 --GSKVVGLH----CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP---SGSKILTTSQDNRLR 284 (449)
Q Consensus 214 --~~~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~ 284 (449)
...+.+++ |+| ++.+|++++.||.|++||+++.+. .....|...|.+++|+| ++.+|++++.||.|+
T Consensus 162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL---RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce---eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 23788888 678 999999999999999999987543 33346888999999999 999999999999999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc-eecccCCCCCCcceEEEECCCc----------
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTG---------- 353 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~d~~i~iwd~~~~---------- 353 (449)
+||+++++.......... . ........+.|+|+ +. +++ +++.|+.|++||+.++
T Consensus 238 i~d~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~---------~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSE-K--AHKSTVWQVRHLPQ---------NRELFL---TAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EEEEEEEETTTEEEEEEE-E--CCSSCEEEEEEETT---------EEEEEE---EEETTSEEEEEEEECCSCC--CCTTS
T ss_pred EEeCcCCCcccceeeecc-C--CCcCCEEEEEECCC---------CCcEEE---EEeCCCcEEEeecCCCcccccccCCC
Confidence 999987665332110000 0 11122346889998 55 555 6889999999999754
Q ss_pred ---------eEEEEEecCccceeceeeecCCCCcEEe-ecC-CCeEEEEcCCCchh
Q 013086 354 ---------QLVAEVMDPNITTISPVNKLHPRDDVLA-SGS-SRSIFIWRPKEKSE 398 (449)
Q Consensus 354 ---------~~~~~~~~~~~~~v~~v~~~~~~~~~l~-s~s-dg~i~iw~~~~~~~ 398 (449)
+.+..+..|. ..+.++ +|+|++++|+ +++ ||.|+||++.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~v~~~-~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST-QPISSL-DWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS-SCEEEE-EECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CccccccccceeeccccCC-CCeeEE-EEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 4566677665 778888 9999999998 788 99999999987654
No 23
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=292.50 Aligned_cols=314 Identities=20% Similarity=0.330 Sum_probs=234.5
Q ss_pred cccceeeeccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCCeeeEEEe------------cccCCceeEEEEeeCC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVSEKIVYG------------NIHSCIVNNIRFNPTN 129 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~------------~~h~~~v~~~~~~~~~ 129 (449)
......+.+|.+.|++++|+| ++ .+|++|+.||.|++||+.+........ .+|...|.+++|+|++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred CcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 344567889999999999999 88 689999999999999998865444332 2599999999999954
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcCCCeEEEEECCCCCCccc
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGE 206 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~ 206 (449)
+.+|++++.||.|++||+.+++....+.... .+.++.+++. +.++++++.+|.|++||++++....
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~- 180 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADVFNFEE----------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH- 180 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEEEECSS----------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-
T ss_pred CcEEEEEeCCCeEEEeeCCCCccceeccCCC----------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-
Confidence 8899999999999999999998887776432 2888899884 4599999999999999999876543
Q ss_pred eEEeecCCCceEEEEEcCCCCC-EEEEEeCCCeEEEEEccCCCCCCce--------------eecCCCCcEEEEEEcCCC
Q 013086 207 AILIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSL--------------CDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~ 271 (449)
....+...|.+++|+| ++. +|++++.||.|++||+++....... ....|...|.+++|+|++
T Consensus 181 --~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 181 --ILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp --EECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred --eecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 3445666899999999 666 6999999999999999865421110 012588899999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
++|++++.||.|++||+.+++........... .........+..... +.++ .++.++.|++||+.
T Consensus 258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~----~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN----NSKKGLKFTVSCGCS-------SEFV----FVPYGSTIAVYTVY 322 (408)
T ss_dssp SEEEEEETTSCEEEEETTTCCBCCCCCCCCCC----CCSSCCCCEECCSSS-------SCEE----EEEETTEEEEEETT
T ss_pred CEEEEecCCCeEEEEECCCCccceeccccccc----cccccceeEEecCCC-------ceEE----EEecCCEEEEEECc
Confidence 99999999999999999988754322111111 011111122222111 1122 24667899999999
Q ss_pred CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceE
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
+++.+..+.+|. ..+.++ +|+|++++|++|+ ||.|++|++.+++.+.........
T Consensus 323 ~~~~~~~~~~~~-~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 378 (408)
T 4a11_B 323 SGEQITMLKGHY-KTVDCC-VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK 378 (408)
T ss_dssp TCCEEEEECCCS-SCEEEE-EEETTTTEEEEEETTSCEEEEEECC-------------
T ss_pred CCcceeeeccCC-CeEEEE-EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec
Confidence 999999998876 778888 8999999999999 999999999999887665544433
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.3e-39 Score=284.99 Aligned_cols=263 Identities=17% Similarity=0.191 Sum_probs=214.8
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|...|++++|+|+ +.+|++++.||+|++||+.++..+..+..+... +.+++|+|++++|++|+.|+.|
T Consensus 10 ~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETP---------VRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------EEEEEEEGGGTEEEEEETTSEE
T ss_pred cCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCc---------EEEEEEeCCCCEEEEECCCCEE
Confidence 689999999999999 999999999999999999999988887765443 9999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee-ecCCCCcEEEEEEcC-CC
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFSP-SG 271 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~ 271 (449)
++||+.+++... ....|...|.+++|+| ++.+|++|+.|+.|++||+++... ... ..+|...|.+++|+| ++
T Consensus 80 ~vwd~~~~~~~~---~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 80 RVFNYNTGEKVV---DFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp EEEETTTCCEEE---EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE--EEEEECCCCSCEEEEEECTTCT
T ss_pred EEEECCCCcEEE---EEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc--hhhhhcccCCcEEEEEECCCCC
Confidence 999999876543 3455666899999999 999999999999999999976422 222 237999999999999 68
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.+|++|+.|+.|++||++++.... . .. .... .....+.|.|... +.+++ +|+.|++|++||+.
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~---~-~~-~~~~--~~v~~~~~~~~~~-------~~~l~---s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNF---T-LT-TGQE--RGVNYVDYYPLPD-------KPYMI---TASDDLTIKIWDYQ 216 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSE---E-EE-CCCT--TCEEEEEECCSTT-------CCEEE---EEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCCccc---e-ec-cCCc--CcEEEEEEEEcCC-------CCEEE---EEcCCCeEEEEeCC
Confidence 899999999999999997655321 0 10 0111 1122456666422 44555 68899999999999
Q ss_pred CceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+++++..+.+|. ..+..+ +|+|++.+|++|+ ||.|++||+.+++.+..+..+...+.|
T Consensus 217 ~~~~~~~~~~h~-~~v~~~-~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 217 TKSCVATLEGHM-SNVSFA-VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (304)
T ss_dssp TTEEEEEEECCS-SCEEEE-EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred CCccceeeCCCC-CCEEEE-EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence 999999999887 677777 8999999999999 999999999999988887766544433
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-38 Score=292.92 Aligned_cols=308 Identities=12% Similarity=0.141 Sum_probs=236.6
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe------eeEEEecccCCceeEEEEeeC---CC---Ce
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPT---ND---GT 132 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~---~~---~~ 132 (449)
....+.+|.+.|++++|+| .+|++|+.||.|++|++.+.. ....+ .+|...|++++|+|+ ++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence 4567889999999999998 379999999999999999876 45555 579999999999996 35 79
Q ss_pred EEEEeCCCeEEEEeCCCCce-----eeeeecCCCCCCCCCcccceeEEEEe----cCCCE-EEEEcCCCeEEEEECCC--
Q 013086 133 VYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGMDIN----PEKGV-VLVADNFGFLYLVDART-- 200 (449)
Q Consensus 133 l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~-- 200 (449)
|++++.||.|++||+.+++. ...+..+... .....|.+++|+ |++.+ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccc----cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999998876 5555443200 001349999999 99999 99999999999999998
Q ss_pred ----CCCccc----eEEe-----ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC---C---CCc
Q 013086 201 ----NSRSGE----AILI-----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---H---KRV 261 (449)
Q Consensus 201 ----~~~~~~----~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~ 261 (449)
...... .+.. ..+...+.+++|+| ++ +|++++.||.|++||+++.+....+ .. | ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~h~~~~~~ 235 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNF--ESQHSMINNSNS 235 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEE--ECCC---CCCCC
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEE--eccccccccCCc
Confidence 554430 1122 34566899999999 88 9999999999999999875432222 24 7 889
Q ss_pred EEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCcccee-----cCCCCccccceeeeeccCCCCCceEEEccee
Q 013086 262 VNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVH-----SHDFNRHLTPFRAEWDPKDPSESLAVIGRYI 333 (449)
Q Consensus 262 v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 333 (449)
|.+++|+|++++|++++.| +.|++||+++++.......... ...+........+.|+|+ ++++
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---------GETL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS---------SSEE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC---------CCEE
Confidence 9999999999999999999 9999999988764321110000 000001223357889998 6666
Q ss_pred cccCCCCCCcceEEEECCCceEEEEEe------cC--------------ccceeceeeecCCCC----------cEEeec
Q 013086 334 SENYNGAALHPIDFIDITTGQLVAEVM------DP--------------NITTISPVNKLHPRD----------DVLASG 383 (449)
Q Consensus 334 ~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~v~~~~~~~----------~~l~s~ 383 (449)
+ +++.|+.|++||+.+++.+..+. .+ +...+..+ +|+|++ ++|++|
T Consensus 307 ~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 307 C---SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV-KFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp E---EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE-EEECTTTSBSTTCTTSCEEEEE
T ss_pred E---EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE-EeccccccccccccccceEEEe
Confidence 6 68899999999999999999998 55 14778888 999998 799999
Q ss_pred C-CCeEEEEcCCCch
Q 013086 384 S-SRSIFIWRPKEKS 397 (449)
Q Consensus 384 s-dg~i~iw~~~~~~ 397 (449)
+ ||.|++|++.+|+
T Consensus 383 ~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 383 CLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTEEEEEEEEC--
T ss_pred cCCCcEEEEEcCCCC
Confidence 9 9999999998764
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.5e-38 Score=282.98 Aligned_cols=290 Identities=14% Similarity=0.190 Sum_probs=231.2
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE---EE-ecccCCceeEEEEeeCCCCeEEEE
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VY-GNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~---~~-~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
+.........+|.+.|++++|+|++ ++|++++ ||.|++||+.+..... .+ ...|...|.+++|+|+ +++|+++
T Consensus 39 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 115 (337)
T 1gxr_A 39 PRHARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVG 115 (337)
T ss_dssp CSEEEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEE
T ss_pred CCccccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEE
Confidence 3333344555899999999999999 6889988 9999999998754322 21 1268999999999999 9999999
Q ss_pred eCCCeEEEEeCCCCce--eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 137 SSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
+.||.|++||+.+++. ...+..+.. .+.+++|+|+++++++++.+|.|++||+++++... ....+.
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~ 183 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELTSSAP---------ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHT 183 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEECSSS---------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCS
T ss_pred cCCCcEEEEECCCCCcceeeecccCCC---------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee---eeeccc
Confidence 9999999999998873 333333222 39999999999999999999999999999875432 334456
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
..+.+++|+| ++.+|++++.||.|++||+++.+. +....+...+.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 184 ~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~ 259 (337)
T 1gxr_A 184 DGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQ---LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259 (337)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred CceEEEEECC-CCCEEEEEecCCcEEEEECCCCce---EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence 6899999999 999999999999999999987443 333457888999999999999999999999999999876531
Q ss_pred CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecC
Q 013086 295 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
.... .......+.|+|+ +++++ +++.|+.|++||+.+++.+.... + ...+..+ +|+
T Consensus 260 -------~~~~--~~~~v~~~~~~~~---------~~~l~---~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~-~~s 315 (337)
T 1gxr_A 260 -------QLHL--HESCVLSLKFAYC---------GKWFV---STGKDNLLNAWRTPYGASIFQSK-E-SSSVLSC-DIS 315 (337)
T ss_dssp -------EECC--CSSCEEEEEECTT---------SSEEE---EEETTSEEEEEETTTCCEEEEEE-C-SSCEEEE-EEC
T ss_pred -------EEcC--CccceeEEEECCC---------CCEEE---EecCCCcEEEEECCCCeEEEEec-C-CCcEEEE-EEC
Confidence 1111 1122347889998 66666 67889999999999998885543 2 3667777 899
Q ss_pred CCCcEEeecC-CCeEEEEcC
Q 013086 375 PRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 375 ~~~~~l~s~s-dg~i~iw~~ 393 (449)
|++++|++++ ||.|++|++
T Consensus 316 ~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 316 VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEecCCCeEEEEEE
Confidence 9999999998 999999986
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-38 Score=289.22 Aligned_cols=299 Identities=12% Similarity=0.123 Sum_probs=234.0
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.+..|.++|++++|+|++ ++|++|+.|+.|++||+.+.. ....+ .+|...|.+++|+|+ +++|++++.||.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 456699999999999999 689999999999999999886 55555 679999999999998 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE-eecCCCceEEEEEcC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNP 224 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 224 (449)
|+.+++......... +...+.+++|+|++++|++++.++.|++||+........... ...+...|.+++|+|
T Consensus 80 d~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 80 TLKGRTWKPTLVILR-------INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEETTEEEEEEECCC-------CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred ECCCCeeeeeEEeec-------CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 999887655543221 112499999999999999999999999999988764222222 234566899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCC---------------CCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRL---------------EAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
++.+|++++.||.|++||++.. .....+..+ .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 153 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 153 -NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp -TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred -CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999997521 122333334 68899999999999999999999999999999
Q ss_pred CCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC--ceE-----------
Q 013086 289 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--GQL----------- 355 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~--~~~----------- 355 (449)
++++..... ..+ ......+.|+|+ +.+++ +| .|+.|++|++.+ ++.
T Consensus 232 ~~~~~~~~~----~~~----~~~v~~~~~~~~---------~~~l~---~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 232 DKKMAVATL----ASE----TLPLLAVTFITE---------SSLVA---AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp GGTTEEEEE----ECS----SCCEEEEEEEET---------TEEEE---EE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred CCCceeEEE----ccC----CCCeEEEEEecC---------CCEEE---EE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 877642211 111 112347888887 66666 45 899999999987 421
Q ss_pred ---------------------E------EEEecCccceeceeeec-CCCC---cEEeecC-CCeEEEEcCCCchhh
Q 013086 356 ---------------------V------AEVMDPNITTISPVNKL-HPRD---DVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 356 ---------------------~------~~~~~~~~~~v~~v~~~-~~~~---~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
. ..+...|...+.++ +| +++| .+|++|+ ||.|++|++.+++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI-SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE-EEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCccee-EEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 22332344788888 54 4777 9999999 999999999887654
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-37 Score=301.38 Aligned_cols=283 Identities=20% Similarity=0.336 Sum_probs=231.9
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
..+..+.+|...|.+++|+|++ .+|++++.|+.|++||...... ..+ .+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-~~~-~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-QTL-TGHSSSVWGVAFSPD-GQTIASASDDKTVK 369 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-EEE-CCCSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred cEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-EEE-eCCCCCEEEEEECCC-CCEEEEEeCCCEEE
Confidence 4456788999999999999999 6899999999999999876543 333 679999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+||. +++.+..+..+.. .|.+++|+|++++|++++.|+.|++||... +. ......+...|.+++|+
T Consensus 370 ~~~~-~~~~~~~~~~~~~---------~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~---~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 370 LWNR-NGQLLQTLTGHSS---------SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL---LQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEET-TCCEEEEEECCSS---------CEEEEEECTTSSCEEEEETTSEEEEECTTC-CE---EEEEECCSSCEEEEEEC
T ss_pred EEcC-CCCEEEEecCCCC---------CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE---EEEecCCCCCeEEEEEC
Confidence 9996 4566666654433 399999999999999999999999999643 22 22344566689999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
| ++.+|++++.|+.|++||... +. .....+|...|.+++|+|++++|++++.|+.|++||. +++... ....
T Consensus 436 ~-d~~~l~~~~~d~~v~~w~~~~-~~--~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~----~~~~ 506 (577)
T 2ymu_A 436 P-DDQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ----TLTG 506 (577)
T ss_dssp T-TSSEEEEEETTSEEEEEETTS-CE--EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE----EEEC
T ss_pred C-CCCEEEEEcCCCEEEEEECCC-CE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE----EEeC
Confidence 9 999999999999999999742 11 2222379999999999999999999999999999996 343321 1111
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
+ ......++|+|+ |++++ +++.|+.|++||. +++.+..+.+|. ..|.++ +|+||+++|+|+
T Consensus 507 h----~~~v~~l~~s~d---------g~~l~---s~~~dg~v~lwd~-~~~~~~~~~~h~-~~v~~~-~fs~dg~~l~s~ 567 (577)
T 2ymu_A 507 H----SSSVRGVAFSPD---------GQTIA---SASDDKTVKLWNR-NGQLLQTLTGHS-SSVWGV-AFSPDGQTIASA 567 (577)
T ss_dssp C----SSCEEEEEECTT---------SSCEE---EEETTSEEEEECT-TSCEEEEEECCS-SCEEEE-EECTTSSCEEEE
T ss_pred C----CCCEEEEEEcCC---------CCEEE---EEECcCEEEEEeC-CCCEEEEEcCCC-CCEEEE-EEcCCCCEEEEE
Confidence 1 122347889998 77777 7889999999996 788899998887 788888 899999999999
Q ss_pred C-CCeEEEEc
Q 013086 384 S-SRSIFIWR 392 (449)
Q Consensus 384 s-dg~i~iw~ 392 (449)
+ |+.|++||
T Consensus 568 ~~D~~i~~Wd 577 (577)
T 2ymu_A 568 SSDKTVKLWN 577 (577)
T ss_dssp ETTSCEEEEC
T ss_pred eCCCEEEEeC
Confidence 9 99999997
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=279.54 Aligned_cols=254 Identities=19% Similarity=0.203 Sum_probs=199.7
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE---EecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV---YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.....|...|.+++|+|++ .|++|+.||.|+|||+.+++.... ...+|...|++++|+|+ +++|++|+.|++|+
T Consensus 76 ~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIK 152 (344)
T ss_dssp SEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred eeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEE
Confidence 4445678899999999986 478999999999999988765433 23579999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
+||+.+++.+..+..+... |.+++|++++. +|++++.|+.|++||+++++....+ ....+...+.+++|
T Consensus 153 iwd~~~~~~~~~~~~h~~~---------V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAHAAQ---------VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAW 222 (344)
T ss_dssp EEETTTTEEEEEECCCSSC---------EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEE
T ss_pred EEECCCCcEEEEEcCcCCc---------eEEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeee
Confidence 9999999998888655443 99999999885 7889999999999999988765432 22334447999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
+|.++.+|++|+.||.|++||+++.+....+ .+|...|++++|+|++ ++|++|+.|+.|+|||+.++++..
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~------ 294 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR------ 294 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC--CCEEE--ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE------
T ss_pred cCCCCcceEEeccCCcEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE------
Confidence 9967789999999999999999876553333 3799999999999987 579999999999999998876421
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
...+ ......++|+|+. ..+++ +++.|++|++|++.+...
T Consensus 295 -~~~H--~~~V~~v~~sp~~--------~~lla---s~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 295 -SQAH--RDFVRDATWSPLN--------HSLLT---TVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp -ECCC--SSCEEEEEECSSS--------TTEEE---EEETTSCEEEEECCC---
T ss_pred -EcCC--CCCEEEEEEeCCC--------CeEEE---EEcCCCeEEEEECCCCCC
Confidence 1111 1223578999983 12333 678999999999987543
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-37 Score=298.21 Aligned_cols=301 Identities=19% Similarity=0.296 Sum_probs=243.1
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...+..+.+|...|++++|+|++ ++|++++.|+.|++|+... .....+ .+|...|.+++|+|+ +..|++++.|++|
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~-~~~~~~-~~h~~~v~~~~~~~~-~~~l~t~~~d~~i 327 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSPD-GQTIASASDDKTV 327 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred CCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC-cEEEEE-ecCCCCeEEEEECCC-CCEEEEEeCCCeE
Confidence 34567889999999999999999 6899999999999999754 344444 689999999999999 9999999999999
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
++||+.... ...+..+.. .+.+++|+|++.++++++.++.|++||... +. ......+...|.+++|
T Consensus 328 ~~w~~~~~~-~~~~~~~~~---------~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~---~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 328 KLWNRNGQH-LQTLTGHSS---------SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL---LQTLTGHSSSVRGVAF 393 (577)
T ss_dssp EEEETTSCE-EEEECCCSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTC-CE---EEEEECCSSCEEEEEE
T ss_pred EEEeCCCCe-eEEEeCCCC---------CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CE---EEEecCCCCCeEEEEE
Confidence 999987544 344433222 399999999999999999999999999643 22 2234456668999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
+| ++++|++++.|+.|++||... ..+.. .+|...|++++|+|++++|++++.|+.|++||+.. +... ..
T Consensus 394 s~-dg~~l~~~~~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~----~~ 463 (577)
T 2ymu_A 394 SP-DGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQ----TL 463 (577)
T ss_dssp CT-TSSCEEEEETTSEEEEECTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEE----EE
T ss_pred CC-CCCEEEEEeCCCEEEEEeCCC----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEE----EE
Confidence 99 999999999999999999642 23333 37999999999999999999999999999999743 2211 11
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
..+ ......++|+|+ |++++ +++.|+.|++||. +++.+..+.+|. ..+.++ +|+|++++|+
T Consensus 464 ~~~----~~~v~~~~~spd---------~~~la---s~~~d~~i~iw~~-~~~~~~~~~~h~-~~v~~l-~~s~dg~~l~ 524 (577)
T 2ymu_A 464 TGH----SSSVRGVAFSPD---------GQTIA---SASDDKTVKLWNR-NGQLLQTLTGHS-SSVRGV-AFSPDGQTIA 524 (577)
T ss_dssp ECC----SSCEEEEEECTT---------SCEEE---EEETTSEEEEEET-TSCEEEEEECCS-SCEEEE-EECTTSSCEE
T ss_pred cCC----CCCEEEEEEcCC---------CCEEE---EEeCCCEEEEEcC-CCCEEEEEeCCC-CCEEEE-EEcCCCCEEE
Confidence 111 112346889998 77777 7889999999995 788899998877 778888 8999999999
Q ss_pred ecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 382 SGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 382 s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+++ ||.|+|||. +++.+..+.+|...+.+
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 554 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEECCSSCEEE
T ss_pred EEECcCEEEEEeC-CCCEEEEEcCCCCCEEE
Confidence 999 999999995 67778888888776554
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-37 Score=274.13 Aligned_cols=295 Identities=14% Similarity=0.164 Sum_probs=230.9
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
.....+.+.+|.+.|++++| +++ .+|++|+.||.|++||+.+......+ ..|...|.+++|+|+ +.+|++++.||.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE-KELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT-TTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC-CCEEEEecCCCe
Confidence 34556889999999999999 887 58999999999999999888777666 679999999999999 999999999999
Q ss_pred EEEEeCCCCc---eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 142 VSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 142 v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
|++|++.... ....+..+. ..+.+++| +++++++++.||.|++||. .. .......+...+.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~---~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQ---------GNVCSLSF--QDGVVISGSWDKTAKVWKE--GS---LVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCS---------SCEEEEEE--ETTEEEEEETTSEEEEEET--TE---EEEEEECCSSCEE
T ss_pred EEEEEeeecCCCCcccchhhcc---------cCEEEEEe--cCCEEEEEeCCCCEEEEcC--Cc---EEEecccCCCcee
Confidence 9999987653 333333222 23888888 6789999999999999992 22 2224445666899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (449)
+++|+|.+++++++++.||.|++||... ....+ .|...|.+++|+|++. |++++.||.|++||+++++....
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDK-----VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTE-----EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCc-----eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence 9999987889999999999999999432 22222 3889999999999998 99999999999999988764321
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCC
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 376 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~ 376 (449)
... .......+.|+|+ +. ++ +++.|+.|++||+.+++.+..+..+. ..+..+ +|+|+
T Consensus 221 ----~~~----~~~~i~~~~~~~~---------~~-l~---~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~-~~~~~ 277 (313)
T 3odt_A 221 ----YEG----HESFVYCIKLLPN---------GD-IV---SCGEDRTVRIWSKENGSLKQVITLPA-ISIWSV-DCMSN 277 (313)
T ss_dssp ----EEC----CSSCEEEEEECTT---------SC-EE---EEETTSEEEEECTTTCCEEEEEECSS-SCEEEE-EECTT
T ss_pred ----hhc----CCceEEEEEEecC---------CC-EE---EEecCCEEEEEECCCCceeEEEeccC-ceEEEE-EEccC
Confidence 111 1122347889997 42 22 47889999999999999999998876 678888 89999
Q ss_pred CcEEeecCCCeEEEEcCCCchhhhhhhcc
Q 013086 377 DDVLASGSSRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 377 ~~~l~s~sdg~i~iw~~~~~~~~~~~~~~ 405 (449)
+++++++.||.|++|++.+++.+......
T Consensus 278 ~~~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 278 GDIIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp SCEEEEETTSCEEEEESCGGGCCC-----
T ss_pred CCEEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 99655444999999999998766554443
No 32
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.7e-37 Score=284.33 Aligned_cols=290 Identities=17% Similarity=0.239 Sum_probs=227.2
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
.++.|+|++++ +||+|. |++|+|||..++.....+. .+|...|++|+|+|+ +++|++|+.||+|++||+.+++.+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEE
Confidence 36779999764 788775 8999999999988766542 467889999999999 999999999999999999999998
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
..+..+... +.++++ ++..+++|+.|+.+++||......... ....+...+..+.++| ++.+++++
T Consensus 183 ~~~~~h~~~---------v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~--~~~~h~~~~~~~~~~~-~g~~l~s~ 248 (420)
T 4gga_A 183 RNMTSHSAR---------VGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA--TLSGHSQEVCGLRWAP-DGRHLASG 248 (420)
T ss_dssp EEECCCSSC---------EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEECT-TSSEEEEE
T ss_pred EEEeCCCCc---------eEEEee--CCCEEEEEeCCCceeEeeecccceeeE--EecccccceeeeeecC-CCCeeeee
Confidence 887654432 666655 578999999999999999987665433 3445566899999999 99999999
Q ss_pred eCCCeEEEEEccCCCCCC--ceeecCCCCcEEEEEEcCCC-CEEEE--eeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 234 GNDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSG-SKILT--TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
+.|+.+++|+..+.+... ......|...|.+++|+|.+ .++++ |+.|+.|++||+.+++... .+..
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~---------~~~~ 319 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---------AVDA 319 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE---------EEEC
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce---------eecc
Confidence 999999999998755432 22233788999999999954 55554 4579999999999876532 1112
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCe
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 387 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~ 387 (449)
+.....+.|+|+. ..++. .+|..|+.|+|||+.+++++..+.+|. ..|.++ +|+|+|++|+||+ |++
T Consensus 320 ~~~v~~~~~~~~~---------~~lv~-~sg~~d~~I~iwd~~~~~~v~~l~gH~-~~V~~l-~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 320 HSQVCSILWSPHY---------KELIS-GHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSL-TMSPDGATVASAAADET 387 (420)
T ss_dssp SSCEEEEEEETTT---------TEEEE-EECTTTCCEEEEETTTCCEEEEECCCS-SCEEEE-EECTTSSCEEEEETTTE
T ss_pred ccceeeeeecCCC---------CeEEE-EEecCCCEEEEEECCCCcEEEEEcCCC-CCEEEE-EEcCCCCEEEEEecCCe
Confidence 2234567888873 32221 146689999999999999999999887 788888 9999999999999 999
Q ss_pred EEEEcCCCchhhhhhh
Q 013086 388 IFIWRPKEKSELVEQK 403 (449)
Q Consensus 388 i~iw~~~~~~~~~~~~ 403 (449)
|+|||+.+..+..+.+
T Consensus 388 vriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 388 LRLWRCFELDPARRRE 403 (420)
T ss_dssp EEEECCSCSSCC----
T ss_pred EEEEECCCCCccchhh
Confidence 9999998765544443
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-36 Score=268.27 Aligned_cols=257 Identities=15% Similarity=0.169 Sum_probs=198.4
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--eeeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTV 142 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v 142 (449)
+..+.+|.+.|++++|+|+| ++||+|+.|++|+|||+... .....+ .+|...|.+++|++. .+++|++|+.|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 35688999999999999999 68999999999999999753 344455 789999999999863 27899999999999
Q ss_pred EEEeCCCCce--eeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 143 SCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 143 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++||+++++. +..+..+. ..|.+++|+|+ +.+|++++.|+.|++||++...... ......+...|.
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~---------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~ 149 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHS---------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVN 149 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCS---------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEE
T ss_pred EEEEcCCCceEEEEEeecCC---------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccc
Confidence 9999988743 23332222 23999999997 8899999999999999998764322 224455666899
Q ss_pred EEEEcCC------------CCCEEEEEeCCCeEEEEEccCCCCCC-cee-ecCCCCcEEEEEEcCCC---CEEEEeeCCC
Q 013086 219 GLHCNPI------------QPELLLSCGNDHFARIWDIRRLEAGS-SLC-DLPHKRVVNSAYFSPSG---SKILTTSQDN 281 (449)
Q Consensus 219 ~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~---~~l~~~~~dg 281 (449)
+++|+|. ++.+|++|+.|+.|++||+++..... ... ..+|...|.+++|+|++ .+|++++.|+
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999993 15799999999999999998644211 222 23799999999999984 8999999999
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe-
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM- 360 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~- 360 (449)
.|++||++++.... ....+.
T Consensus 230 ~v~iWd~~~~~~~~-----------------------------------------------------------~~~~~~~ 250 (297)
T 2pm7_B 230 TCIIWTQDNEQGPW-----------------------------------------------------------KKTLLKE 250 (297)
T ss_dssp CEEEEEESSTTSCC-----------------------------------------------------------EEEESSS
T ss_pred cEEEEEeCCCCCcc-----------------------------------------------------------ceeeeec
Confidence 99999986432100 000000
Q ss_pred cCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 361 DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 361 ~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
..+...+..+ +|+|++++||+++ ||.|+||+..
T Consensus 251 ~~~~~~v~~~-~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 251 EKFPDVLWRA-SWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCSSCEEEE-EECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccCCCcEEEE-EECCCCCEEEEEcCCCcEEEEEEC
Confidence 1112456677 8999999999998 9999999976
No 34
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.5e-37 Score=278.26 Aligned_cols=305 Identities=17% Similarity=0.140 Sum_probs=218.7
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----eeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGT 141 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~ 141 (449)
..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.+.. ....+ .+|...|++++|+|. ++.+|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 5678999999999999999 689999999999999998753 33333 679999999999993 2889999999999
Q ss_pred EEEEeCCCCc---------eeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEE-
Q 013086 142 VSCTDLETGL---------ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAIL- 209 (449)
Q Consensus 142 v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 209 (449)
|++||+.++. ....+..+. ..+.+++|+|+ +.++++++.||.|++||+++.........
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSK---------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCS---------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEecCCCcccccccCcceeeeecccC---------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 9999998873 344443322 23999999999 99999999999999999998776543321
Q ss_pred ---------eecCCCceEEEEEcCC--CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC----CEE
Q 013086 210 ---------IHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG----SKI 274 (449)
Q Consensus 210 ---------~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l 274 (449)
...+...+.+++|+|. ++.++++++.++.+.+|+.............+|...|++++|+|++ ++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 1134557999999993 2899999999999988887654332223333789999999999998 899
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
++++.||.|++||++++............. ....+.+. ......+. ..+.....+.+|+..+.+
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNS--------NMFDNSAD---VDMDAQGR-----SDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEETTSCEEEEEEEECC-------------------------------------------------------CCSEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccce--------eccCCCcc---cccccccc-----cccccceeeeeccccccc
Confidence 999999999999998764422111000000 00111111 11111111 134455667788888888
Q ss_pred EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhh
Q 013086 355 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 355 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
.+..+.+|. ..+.++ +|+|++++|++|+ ||.|+||++.+++.+.
T Consensus 298 ~~~~~~~h~-~~v~~~-~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 298 LLSEHDDHN-GEVWSV-SWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEEECTTS-SCEEEE-EECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEEEEeccc-ccEEEE-EEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 888888776 778888 9999999999999 9999999999876544
No 35
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=291.67 Aligned_cols=311 Identities=15% Similarity=0.185 Sum_probs=227.1
Q ss_pred Cccccceee-eccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcC---Ce---eeEEEecccCCceeEEEEeeCCCCe
Q 013086 61 PDQVNCAVI-RYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYK---VS---EKIVYGNIHSCIVNNIRFNPTNDGT 132 (449)
Q Consensus 61 ~~~~~~~~~-~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~---~~---~~~~~~~~h~~~v~~~~~~~~~~~~ 132 (449)
+....+..+ .+|.+.|++++|+| ++ .+|++|+.||.|+|||+.+ +. ....+ .|...|++++|+|+ +.+
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~-~~~ 125 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN-FDA 125 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT-SSE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC-CCE
Confidence 455667777 89999999999999 88 6899999999999999876 33 22332 49999999999998 999
Q ss_pred EEEEeCCCeEEEEeCC---CCceeeeeecCCCC---CCCCCcccceeEEE--EecCCCEEEEEcCCCeEEEEECCCCCCc
Q 013086 133 VYAASSDGTVSCTDLE---TGLALSLMNVNPNG---WHGPRTWRMLYGMD--INPEKGVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 133 l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~---~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
|++++.||+|++||+. +++.......+... +........+.++. +++++.++++++.|+.|++||+++++..
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 9999999999999995 55444433211000 00000112366666 5678999999999999999999987765
Q ss_pred cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC----CCCEEEEeeCC
Q 013086 205 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP----SGSKILTTSQD 280 (449)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d 280 (449)
..+ ..+.+...|.+++|+| ++.+|++|+.||.|++||+++.+....+ ...|...|.+++|+| ++.+|++++.|
T Consensus 206 ~~~-~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d 282 (437)
T 3gre_A 206 QII-ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSW-SFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282 (437)
T ss_dssp EEE-ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEE-BCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred EEE-ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEE-ecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence 322 3322455899999999 8999999999999999999874432222 126778999996665 67899999999
Q ss_pred CcEEEEeCCCCCCCCCCccc---e----e--------cCCCC---ccccceeeeeccCCCCCceEEEcceecccCCCCCC
Q 013086 281 NRLRIWDSIFGNLDSPSREI---V----H--------SHDFN---RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 342 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~---~----~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d 342 (449)
|.|++||+++++........ . . ...+. .......++|+ + +.+++ +|+.|
T Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~---------~~~l~---s~~~d 349 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N---------DKILL---TDEAT 349 (437)
T ss_dssp EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T---------TEEEE---EEGGG
T ss_pred CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C---------ceEEE---ecCCC
Confidence 99999999987743211100 0 0 00000 01112234444 2 55666 78999
Q ss_pred cceEEEECCCceEEEEEecC------------------------------------ccceeceeeecCCC--CcEEeecC
Q 013086 343 HPIDFIDITTGQLVAEVMDP------------------------------------NITTISPVNKLHPR--DDVLASGS 384 (449)
Q Consensus 343 ~~i~iwd~~~~~~~~~~~~~------------------------------------~~~~v~~v~~~~~~--~~~l~s~s 384 (449)
+.|++||+.+++....+.++ +...|.++ +|+++ +.+|++|+
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i-~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI-STCEVDETPLLVACD 428 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE-EEEESSSSEEEEEEE
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE-eeeccCCceEEEEEc
Confidence 99999999999988877764 45778888 78887 78999999
Q ss_pred -CCeEEEEc
Q 013086 385 -SRSIFIWR 392 (449)
Q Consensus 385 -dg~i~iw~ 392 (449)
||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 99999995
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-38 Score=291.57 Aligned_cols=298 Identities=13% Similarity=0.222 Sum_probs=232.6
Q ss_pred cCccEEEEEEeCCCCcEEEEE----------cCCCcEEEEeCcCCee---eEEEecccCCceeEEEEeeCCCCeEEEEeC
Q 013086 72 HSRRVTCLEFHPTNNHILLSG----------DKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~----------~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
+...|.+++|+|++..+|++| +.|+.|+|||+.+... ... ..|...|++++|+|+ +.+|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHN-NKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSS-SSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCC-CCeEEEEcc
Confidence 345789999999985599999 8899999999987652 222 358899999999999 999999999
Q ss_pred CCeEEEEeCCC----CceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCC------Cccce
Q 013086 139 DGTVSCTDLET----GLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNS------RSGEA 207 (449)
Q Consensus 139 dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~ 207 (449)
||.|++||+.+ .+....+..+.. .|.+++|+|+ +.+|++++.|+.|++||+.+.. .....
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSS---------SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSS---------CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred CCeEEEeecccccccccchhhccCCcc---------ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 99999999987 335555443332 3999999998 8999999999999999999876 22222
Q ss_pred EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec----CCCCcEEEEEEcCCC-CEEEEeeCCC-
Q 013086 208 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSG-SKILTTSQDN- 281 (449)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~~~dg- 281 (449)
.....+...|.+++|+|..+.+|++++.||.|++||+++.+....+... +|...|.+++|+|++ .+|++++.|+
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 1223455689999999933889999999999999999875443322211 127889999999987 6899999998
Q ss_pred --cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEE
Q 013086 282 --RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 282 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
.|++||++++.... ... . .........+.|+|.+ +.+++ +++.|+.|++||+.+++.+..+
T Consensus 239 ~~~i~~~d~~~~~~~~--~~~-~---~~~~~~v~~~~~s~~~--------~~~l~---s~~~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 239 DPSILIWDLRNANTPL--QTL-N---QGHQKGILSLDWCHQD--------EHLLL---SSGRDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp SCCCCEEETTSTTSCS--BCC-C---SCCSSCEEEEEECSSC--------SSCEE---EEESSSEEEEECSSSCCEEEEE
T ss_pred CceEEEEeCCCCCCCc--EEe-e---cCccCceeEEEeCCCC--------CCeEE---EEeCCCCEEEeeCCCCccceee
Confidence 99999998763211 100 0 0112233578999932 56666 6888999999999999999999
Q ss_pred ecCccceeceeeecCCCC-cEEeecC-CCeEEEEcCCCchhhh
Q 013086 360 MDPNITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 360 ~~~~~~~v~~v~~~~~~~-~~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
..|. ..+.++ +|+|++ .+|++++ ||.|++|++.++....
T Consensus 302 ~~~~-~~v~~~-~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 302 PARG-NWCFKT-KFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp ECSS-SCCCCE-EECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred cCCC-CceEEE-EECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 8876 678888 899999 8999999 9999999998876443
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.9e-37 Score=279.54 Aligned_cols=306 Identities=13% Similarity=0.161 Sum_probs=227.5
Q ss_pred eeeeccCccEEEEEEeCC---CCcEEEEEcCCCcEEEEeCcCCeeeEEEe----cccCCceeEEEEeeCC---CCeEEEE
Q 013086 67 AVIRYHSRRVTCLEFHPT---NNHILLSGDKKGQVGVWDFYKVSEKIVYG----NIHSCIVNNIRFNPTN---DGTVYAA 136 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~---~~~~l~t~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~~~~~---~~~l~s~ 136 (449)
....+|.+.|++++|+|+ +..++++++.++.|++||+.++.....+. ..|...|++++|+|+. +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345689999999999984 43556666667899999999776554442 1266889999999983 3489999
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
+.||.|++||+.+++.+..+..+.. .|.+++|+| ++.+|++++.||.|++||+++++..........+..
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGN---------AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCS---------CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred cCCCEEEEEEchhceEeeeecCCCC---------cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 9999999999999998888765443 399999999 899999999999999999998764322111145667
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee--------------------------ecCCCCcEEEEEEcC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC--------------------------DLPHKRVVNSAYFSP 269 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------~~~~~~~v~~~~~~~ 269 (449)
.|.+++|+| ++.+|++++.||.|++||+++.+....+. ...|...|.+++|+
T Consensus 163 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 163 EVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred ceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 899999999 99999999999999999998643321110 11388999999998
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCC----c-cceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCc
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSPS----R-EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
+.+|++++.|+.|++||+.++...... . .......+..+ .....+.|+|+.. |++++ +|+.|+
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~l~---~~~~dg 309 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW-------QKMLA---LGNQVG 309 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT-------SSEEE---EECTTS
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC-------CcEEE---EEecCC
Confidence 779999999999999999876541100 0 00000000111 1122345555421 55666 688999
Q ss_pred ceEEEECCCce----EEEEEecCc-cceeceeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 344 PIDFIDITTGQ----LVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 344 ~i~iwd~~~~~----~~~~~~~~~-~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
.|++||+.+++ ....+..+. ...+..+ +|+|++++|++++ ||.|++||+.+
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT-SFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEECCCCCCccccceEEcccccCCceEEE-EeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999875 444666652 4778888 9999999999999 99999999863
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-37 Score=285.21 Aligned_cols=291 Identities=13% Similarity=0.140 Sum_probs=229.0
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeC----cCCe------eeEEEec---------ccCCceeEEEEeeC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF----YKVS------EKIVYGN---------IHSCIVNNIRFNPT 128 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~----~~~~------~~~~~~~---------~h~~~v~~~~~~~~ 128 (449)
....|.+.|++++|+|++..+|++|+.||.|++|++ .++. ....+.. +|...|++++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 334566999999999999338999999999999999 7766 3333321 16779999999999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc--
Q 013086 129 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE-- 206 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 206 (449)
+++|++++.||.|++|| .+++....+..+.. .|.+++|+|++++|++++.++.|++||+.+++....
T Consensus 120 -~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 120 -GNSIVTGVENGELRLWN-KTGALLNVLNFHRA---------PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp -SSEEEEEETTSCEEEEE-TTSCEEEEECCCCS---------CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred -CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc---------cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 99999999999999999 56666666654433 399999999999999999999999999976542210
Q ss_pred ---------------------------------------------------eEEeecCCCceEEEEEcCCCCCEEEEEeC
Q 013086 207 ---------------------------------------------------AILIHRKGSKVVGLHCNPIQPELLLSCGN 235 (449)
Q Consensus 207 ---------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (449)
......+...|.+++|+| ++.+|++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 267 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASD 267 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEET
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcC
Confidence 012223556899999999 9999999999
Q ss_pred CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceee
Q 013086 236 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRA 315 (449)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (449)
|+.|++||+++.+....+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.... ... .......+
T Consensus 268 d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----~~~----~~~~i~~~ 336 (425)
T 1r5m_A 268 DGTLRIWHGGNGNSQNCF--YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL----SIV----DGVPIFAG 336 (425)
T ss_dssp TSCEEEECSSSBSCSEEE--CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE----EEC----TTCCEEEE
T ss_pred CCEEEEEECCCCccceEe--cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe----ccc----CCccEEEE
Confidence 999999999875543333 3588999999999999 999999999999999987764221 111 11223478
Q ss_pred eeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce--------------------EEEEEecCccc-eeceeeecC
Q 013086 316 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--------------------LVAEVMDPNIT-TISPVNKLH 374 (449)
Q Consensus 316 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~-~v~~v~~~~ 374 (449)
.|+|+ +++++ +++.|+.|++||+.+++ .+..+..+... .+..+ +|+
T Consensus 337 ~~s~~---------~~~l~---~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s 403 (425)
T 1r5m_A 337 RISQD---------GQKYA---VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL-SWN 403 (425)
T ss_dssp EECTT---------SSEEE---EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE-EEC
T ss_pred EEcCC---------CCEEE---EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE-Ecc
Confidence 89998 66666 67889999999999988 88888887644 88888 899
Q ss_pred CCCcEEeecC-CCeEEEEcCC
Q 013086 375 PRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 375 ~~~~~l~s~s-dg~i~iw~~~ 394 (449)
|++++|++++ ||.|++|+++
T Consensus 404 ~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTSSEEEEEESSSCCEEEECC
T ss_pred CCCceEEEEecCceEEEEeec
Confidence 9999999998 9999999985
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-36 Score=281.45 Aligned_cols=295 Identities=16% Similarity=0.236 Sum_probs=226.3
Q ss_pred eeeccCcc--EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 68 VIRYHSRR--VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 68 ~~~~h~~~--V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
...+|... +.++.|++. . +++++.|+.|++||+.++.........|...|++++|+|+ +.+|++|+.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~~--~-l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNL--N-VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECTT--S-EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecCC--C-EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEE
Confidence 34477665 445666653 3 6777889999999999988877776668999999999998 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|+.+++.+..+..+.. .|.+++| ++.++++++.||.|++||++...... .....+...|.+++|+|
T Consensus 162 d~~~~~~~~~~~~~~~---------~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~- 227 (401)
T 4aez_A 162 DVESQTKLRTMAGHQA---------RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI--GTLQGHSSEVCGLAWRS- 227 (401)
T ss_dssp ETTTCCEEEEECCCSS---------CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECT-
T ss_pred ECcCCeEEEEecCCCC---------ceEEEEE--CCCEEEEEcCCCCEEEEecccCccee--eEEcCCCCCeeEEEEcC-
Confidence 9999988887764433 3899999 56799999999999999998654332 23445666899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEee--CCCcEEEEeCCCCCCCCCCcccee
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTS--QDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
++.+|++|+.|+.|++||+++... ......|...|.+++|+|++ .++++++ .|+.|++||+.+++.....
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----- 300 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----- 300 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----
T ss_pred CCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----
Confidence 999999999999999999986443 22233689999999999966 4566654 7999999999887653211
Q ss_pred cCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEE--EecCccceeceeeecCCCCcEE
Q 013086 303 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE--VMDPNITTISPVNKLHPRDDVL 380 (449)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l 380 (449)
........+.|+|+ +.+++.. +|..|+.|++||+.+++.... +.+|. ..+..+ +|+|++++|
T Consensus 301 ----~~~~~v~~~~~s~~---------~~~l~~~-~g~~dg~i~v~~~~~~~~~~~~~~~~h~-~~v~~~-~~s~dg~~l 364 (401)
T 4aez_A 301 ----DAGSQVTSLIWSPH---------SKEIMST-HGFPDNNLSIWSYSSSGLTKQVDIPAHD-TRVLYS-ALSPDGRIL 364 (401)
T ss_dssp ----ECSSCEEEEEECSS---------SSEEEEE-ECTTTCEEEEEEEETTEEEEEEEEECCS-SCCCEE-EECTTSSEE
T ss_pred ----eCCCcEEEEEECCC---------CCeEEEE-eecCCCcEEEEecCCccceeEEEecCCC-CCEEEE-EECCCCCEE
Confidence 11223457899998 5555410 267899999999999765554 44555 778888 899999999
Q ss_pred eecC-CCeEEEEcCCCchhhhhhh
Q 013086 381 ASGS-SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 381 ~s~s-dg~i~iw~~~~~~~~~~~~ 403 (449)
++++ ||.|++|++.+++.+....
T Consensus 365 ~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 365 STAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECTTSEEEEEECCC--------
T ss_pred EEEeCCCcEEEEECCCCccccccc
Confidence 9999 9999999999998776543
No 40
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-37 Score=286.91 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=219.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|..+|++++|+|+ +.+|++|+.||+|++||+.+++....+..+... |.+++|+|++++|++|+.|+.|
T Consensus 105 ~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~---------V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDS---------VQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp ECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSC---------EEEEEECTTSSEEEEEETTSCC
T ss_pred cccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc---------EEEEEEcCCCCEEEEEeCCCeE
Confidence 689999999999999 999999999999999999999988887655443 9999999999999999999999
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 273 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (449)
++||+.+..... ....+...|.+++|+| ++.+|++|+.|+.|++||++++..... ..+|...|.++.|+|++.+
T Consensus 175 ~iwd~~~~~~~~---~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 175 KLWDFQGFECIR---TMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp CEEETTSSCEEE---CCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSE
T ss_pred EEEeCCCCceeE---EEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCE
Confidence 999998866432 2345666899999999 999999999999999999987544222 2379999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCC-----------ceEEEcceecccCCCCCC
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE-----------SLAVIGRYISENYNGAAL 342 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~d 342 (449)
|++++.|+.|++||+.+++.... ...+ .....++.|+|+.... .....|.+++ +|+.|
T Consensus 249 l~s~s~D~~v~vwd~~~~~~~~~----~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~---sgs~D 317 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKECKAE----LREH----RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL---SGSRD 317 (410)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE----ECCC----SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE---EEETT
T ss_pred EEEEcCCCeEEEEECCCCceeeE----ecCC----CceEEEEEEcCcccccchhhhccccccccCCCCCEEE---EEeCC
Confidence 99999999999999987764221 1111 1122467788763210 0111245666 78999
Q ss_pred cceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 343 HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 343 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+.|++||+.+++++..+.+|. ..+.++ +|+|++++|++|+ ||.|++||+.+++.+..+..|...+.|
T Consensus 318 ~~i~iwd~~~~~~~~~~~~h~-~~v~~v-~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 318 KTIKMWDVSTGMCLMTLVGHD-NWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp SEEEEEETTTTEEEEEEECCS-SCEEEE-EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred CeEEEEECCCCceEEEEECCC-CcEEEE-EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 999999999999999998876 678888 8999999999999 999999999999988888888766554
No 41
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=272.08 Aligned_cols=248 Identities=15% Similarity=0.233 Sum_probs=208.9
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
...+.+|...|.+++|++++ .++++++.|+.|++||+.++.....+ ..|...+.+++|+|+ +++|++++.||.|++|
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPD-SQYLATGTHVGKVNIF 149 (321)
T ss_dssp EEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTT-SSEEEEECTTSEEEEE
T ss_pred eeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCC-CCEEEEEcCCCcEEEE
Confidence 45689999999999999998 68999999999999999999888777 578889999999999 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
++++++....+..+.. .+.+++|+|++++|++++.||.|++||+++++... ....+...|.+++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~---------~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~sp- 216 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGK---------FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSP- 216 (321)
T ss_dssp ETTTCSEEEEEECSSS---------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECT-
T ss_pred EcCCCceeEEecCCCc---------eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcC-
Confidence 9999988777655433 39999999999999999999999999999876432 3445666899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 305 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 305 (449)
++.+|++|+.|+.|++||+++.... ....+|...|.+++|+|++.+|++++.|+.|++||+.++++.... .
T Consensus 217 d~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~--- 287 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQHANLA--GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----F--- 287 (321)
T ss_dssp TSCEEEEECTTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----C---
T ss_pred CCCEEEEEcCCCeEEEEECCCccee--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----c---
Confidence 9999999999999999999864432 222379999999999999999999999999999999887653211 0
Q ss_pred CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 306 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
........++|+|+ |.+++ +++.|+.|++||..
T Consensus 288 -~h~~~v~~v~~s~~---------g~~l~---s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 -DHQDQVWGVKYNGN---------GSKIV---SVGDDQEIHIYDCP 320 (321)
T ss_dssp -CCSSCEEEEEECTT---------SSEEE---EEETTCCEEEEECC
T ss_pred -CCCCcEEEEEECCC---------CCEEE---EEeCCCeEEEEeCC
Confidence 11122357899998 66666 78999999999963
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=289.35 Aligned_cols=295 Identities=12% Similarity=0.154 Sum_probs=224.9
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC---C-eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---V-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~---~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
.|...|++++|+|++ .+|++|+.||.|++||+.+ + .....+ .+|...|++++|+|+++.+|++++.||.|++||
T Consensus 65 ~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred ecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 588999999999999 6899999999999999987 2 344444 789999999999997678999999999999999
Q ss_pred CCCCc------eeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeec----CCC
Q 013086 147 LETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHR----KGS 215 (449)
Q Consensus 147 ~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~ 215 (449)
+.+++ ....+.. ...+...+.+++|+|+ +.++++++.||.|++||+++.+..... ..+. +..
T Consensus 143 ~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 215 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQ------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL-SYTSPNSGIKQ 215 (416)
T ss_dssp TTTTSSCTTTCCCBCCCC------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE-CCCCCSSCCCC
T ss_pred CCCCcccccccccccccc------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE-eccccccccCC
Confidence 99876 2222210 0112234999999999 789999999999999999987654221 1111 156
Q ss_pred ceEEEEEcCCCCCEEEEEeCCC---eEEEEEccCCCCCCceeec-CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 013086 216 KVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+.+++|+|....++++++.|+ .|++||+++...... ... +|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ-TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB-CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE-EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 8999999993347999999998 999999987532211 122 5889999999999 999999999999999999988
Q ss_pred CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEc-ceecccCCCCCCcceEEEECCCceEEEEEec--------
Q 013086 291 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIG-RYISENYNGAALHPIDFIDITTGQLVAEVMD-------- 361 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------- 361 (449)
++.... ...+ ......+.|+|+ + .+++ +++.|+.|++||+.++........
T Consensus 295 ~~~~~~----~~~~----~~~v~~~~~s~~---------~~~~l~---s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 295 AEQLSQ----FPAR----GNWCFKTKFAPE---------APDLFA---CASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp CCEEEE----EECS----SSCCCCEEECTT---------CTTEEE---ECCSSSEEEEEESCCCCCSSCC----------
T ss_pred Ccccee----ecCC----CCceEEEEECCC---------CCCEEE---EEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 764221 1111 112347899998 4 5555 688999999999987653222110
Q ss_pred ------C--------------------ccceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 362 ------P--------------------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 362 ------~--------------------~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
+ +...+..+ +|+|+|++|++++ |+.|+||++.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA-HWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCC-EEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccccCCccccCCccce-EEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0 22445566 8999999999999 999999999864
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-36 Score=284.09 Aligned_cols=298 Identities=16% Similarity=0.208 Sum_probs=232.5
Q ss_pred cceeeeccCccE-EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 65 NCAVIRYHSRRV-TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V-~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
....+.+|...| .++.++ + .+|++|+.||.|++||+.+++....+ .+|...|.+++|+|+ + .|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG-G-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST-T-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC-C-EEEEEeCCCCEE
Confidence 456899999885 677664 4 48999999999999999999888877 689999999999987 5 999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe--cCCCEEEEEcCCCeEEEEECCCCCCccc---------------
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTNSRSGE--------------- 206 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------- 206 (449)
+||+++++....+..+.. .|.+++|+ +++.++++++.||.|++||+.+......
T Consensus 187 vwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNS---------TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEETTTTEEEEEECCCSS---------CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEECCCCcEEEEECCCCC---------ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999998887765443 39999998 5778999999999999999988654321
Q ss_pred -----eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 207 -----AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 207 -----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
......+...+.++ ++ +++++++|+.||.|++||+++.+... ...+|...|.+++|+|++++|++++.||
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLY--ILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 22334455567766 45 77999999999999999998654422 2236899999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
.|++||+++++.... +..+.. ...+.|+ +.+++ +++.|+.|++||+.++.......
T Consensus 333 ~i~vwd~~~~~~~~~---------~~~h~~~v~~~~~~-----------~~~l~---s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 333 TIRIWDLENGELMYT---------LQGHTALVGLLRLS-----------DKFLV---SAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp CEEEEETTTTEEEEE---------ECCCSSCEEEEEEC-----------SSEEE---EEETTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEECCCCcEEEE---------EeCCCCcEEEEEEc-----------CCEEE---EEeCCCcEEEEECCCCceeeeec
Confidence 999999988764221 111111 1234443 44555 68899999999999988776664
Q ss_pred cCccceeceeeecCCCCcEEeecCCCeEEEEcCCCchhhhh-hhccceE
Q 013086 361 DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVE-QKEEMKI 408 (449)
Q Consensus 361 ~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~~~~~-~~~~~~~ 408 (449)
.. ..+..+ +|++++++|++|+||.|++||+.+++.+.. +..+...
T Consensus 390 ~~--~~~~~~-~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 390 HT--NLSAIT-TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ 435 (464)
T ss_dssp CT--TCCCEE-EEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSE
T ss_pred CC--CCccEE-EEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCc
Confidence 33 334444 799999999999999999999999998865 4444433
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-38 Score=288.33 Aligned_cols=254 Identities=13% Similarity=0.136 Sum_probs=187.1
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC--eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
..++.|.++|++++|+|++ ++|++|+.|+.|+|||+.++ .....+ .+|...|.+++|+|+ +++|++++.|++|++
T Consensus 5 ~~~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK-SNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEEEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT-TCCEEEEETTSSEEE
T ss_pred eeEecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC-CCEEEEEeCCCeEEE
Confidence 3456678899999999999 68999999999999999987 444444 689999999999999 999999999999999
Q ss_pred EeCCCCc---eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec-CCCceEEE
Q 013086 145 TDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR-KGSKVVGL 220 (449)
Q Consensus 145 wd~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~ 220 (449)
||+.++. ....+..+. ..|.+++|+|++++|++++.|+.|++||+++............ +...|.++
T Consensus 82 wd~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLN---------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp C------CCCCEEECCCCS---------SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EEcCCCCceeeeeEecccC---------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999877 333332222 2499999999999999999999999999998764222233444 66789999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCC---------------CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEA---------------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
+|+| ++.+|++++.|+.|++||++.... ...+..++|...|.+++|+|++++|++++.||.|++
T Consensus 153 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999 999999999999999999863221 122333378899999999999999999999999999
Q ss_pred EeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 286 WDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
||+.+++.... ....+..+. ....+.|+|+ |++++ +|+.++.+ +|+..
T Consensus 232 wd~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~---------~~~l~---~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 232 AYPSAPEQPPR-----ALITVKLSQLPLRSLLWANE---------SAIVA---AGYNYSPI-LLQGN 280 (377)
T ss_dssp CEECSTTSCEE-----ECCCEECSSSCEEEEEEEET---------TEEEE---EESSSSEE-EECCC
T ss_pred EECCCCCCcce-----eeEeecCCCCceEEEEEcCC---------CCEEE---EEcCCcEE-EEEeC
Confidence 99998765100 001111111 2347889998 66766 55555544 77664
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=269.27 Aligned_cols=283 Identities=17% Similarity=0.242 Sum_probs=222.4
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.++|+||+++ +||+|. |++|+|||+.+++....+. .+|...|++++|+|+ +++|++|+.||+|++||+++++.+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEE
Confidence 5779999875 677765 8999999999988776552 568889999999999 9999999999999999999999988
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.+..+... +. .+++++..+++++.++.+.+|+......... ....+...+..+.+.+ ++.+|++++
T Consensus 104 ~~~~h~~~---------~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 104 NMTSHSAR---------VG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--TLSGHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp EEECCSSC---------EE--EEEEETTEEEEEETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred EecCccce---------EE--EeecCCCEEEEEecCCceEeeecCCCceeEE--EEcCccCceEEEEEcC-CCCEEEEEe
Confidence 87654332 43 4566778999999999999999988765433 3445566899999999 999999999
Q ss_pred CCCeEEEEEccCCCCCC--ceeecCCCCcEEEEEEcCCCCEE---EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc
Q 013086 235 NDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSGSKI---LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 309 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (449)
.|+.|++||+++.+... ......+...|.++.++|++..+ ++++.++.|++||........ .....
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~---------~~~~~ 240 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---------AVDAH 240 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE---------EEECS
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc---------cccce
Confidence 99999999998765432 22233678899999999965533 456778999999997655321 01111
Q ss_pred ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeE
Q 013086 310 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 388 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i 388 (449)
.....+.|+|.. ..++. .+|..|+.|++||+.+++++.++.+|. ..|.++ +|+|++++|+||+ ||+|
T Consensus 241 ~~v~~~~~~~~~---------~~~~~-~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l-~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 241 SQVCSILWSPHY---------KELIS-GHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSL-TMSPDGATVASAAADETL 308 (318)
T ss_dssp SCEEEEEEETTT---------TEEEE-EECTTTCCEEEEETTTCCEEEEECCCS-SCEEEE-EECTTSSCEEEEETTTEE
T ss_pred eeeeeeeecccc---------cceEE-EEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEE-EEcCCCCEEEEEecCCeE
Confidence 223466777763 22220 146789999999999999999999877 789988 9999999999999 9999
Q ss_pred EEEcCCCch
Q 013086 389 FIWRPKEKS 397 (449)
Q Consensus 389 ~iw~~~~~~ 397 (449)
+|||+.+..
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-36 Score=275.86 Aligned_cols=295 Identities=12% Similarity=0.071 Sum_probs=213.2
Q ss_pred ccEEEEEEeCCCCcEEEEEcCC-------CcEEEEeCcCCeee---------EEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 74 RRVTCLEFHPTNNHILLSGDKK-------GQVGVWDFYKVSEK---------IVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d-------~~i~vwd~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
-+|++++|+|++ ++|++|+.+ +.|++|++...... ...+.+|...|.+++++ ++.+++|.
T Consensus 15 ~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC 90 (365)
T ss_dssp SCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred CCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence 479999999999 789998753 35999998654311 11235688888888776 45666653
Q ss_pred -----------CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--CCCeEEEEECCCCCCc
Q 013086 138 -----------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRS 204 (449)
Q Consensus 138 -----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 204 (449)
.|+.+++|++........................+.+++|+|||+++++++ .|+.|++||+.+++..
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 577899999876543222111111111112223488999999999987654 6899999999987654
Q ss_pred cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---
Q 013086 205 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--- 281 (449)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 281 (449)
.. ..+...|.+++|+| ++.+|++++.+ .+.+|+..++..........|...|.+++|+|+++++++++.|+
T Consensus 171 ~~----~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 171 FE----IETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EE----EECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred EE----eCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 32 23455899999999 99999999854 56677766544322222336888999999999999999999887
Q ss_pred -cEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEE
Q 013086 282 -RLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 282 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
.+++|++..+... ......+..+. ...+++|+|+ |++++ +|+.|++|+|||+.+++++..+
T Consensus 245 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spd---------g~~la---sgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 245 IVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMK---------GELAV---LASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTT---------SCEEE---EEETTSCEEEEETTTTEEEEEE
T ss_pred eEEeecccccceec-----ceeeeeecCCCCCeEeEEECCC---------CCceE---EEcCCCEEEEEECCCCcEEEEe
Confidence 6888998654321 11111122222 2347899998 88888 8999999999999999999987
Q ss_pred ecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 360 MDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 360 ~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
...|...|+++ +|+|||++||+|+ |++|+||++...
T Consensus 308 ~~gH~~~V~~v-~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 KQAHSFAITEV-TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSSSSCEEEE-EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCcccCCEEEE-EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 65555889999 9999999999999 999999998643
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.8e-36 Score=279.65 Aligned_cols=300 Identities=13% Similarity=0.087 Sum_probs=225.1
Q ss_pred CCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 60 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 60 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
.........+..| ..+....|++++ ++|++|+.||.|++||+.++.....+ .+|...|++++|+|+ +++|++++.|
T Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~d 160 (420)
T 3vl1_A 85 TIIRDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPS-GEALISSSQD 160 (420)
T ss_dssp CCSEETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTT-SSEEEEEETT
T ss_pred ecccceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCC-CCEEEEEeCC
Confidence 3334444555666 445556788998 68999999999999999987776655 689999999999999 9999999999
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC-----
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG----- 214 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----- 214 (449)
+.|++||+.+++....+..+.. .|.+++|+|++++|++++.|+.|++||+++++..........+.
T Consensus 161 ~~i~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 161 MQLKIWSVKDGSNPRTLIGHRA---------TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp SEEEEEETTTCCCCEEEECCSS---------CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred CeEEEEeCCCCcCceEEcCCCC---------cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 9999999999988887765443 39999999999999999999999999999876543221111122
Q ss_pred ----------------CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC-EEEEe
Q 013086 215 ----------------SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTT 277 (449)
Q Consensus 215 ----------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 277 (449)
..+.+++|+| ++.+|++|+.||.|++||+++.+....+ ...|...|.+++|+|++. +|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEE
T ss_pred EEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEE
Confidence 3455566678 8899999999999999999875442222 125788999999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE--
Q 013086 278 SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL-- 355 (449)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~-- 355 (449)
+.||.|++||+++++.. ...... .+...+...+.++ +.+++ +++.|+.|++||+.+...
T Consensus 310 ~~dg~i~vwd~~~~~~~--~~~~~~-----~~~~~v~~~~~~~---------~~~l~---s~~~d~~v~iw~~~~~~~~~ 370 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECP--VGEFLI-----NEGTPINNVYFAA---------GALFV---SSGFDTSIKLDIISDPESER 370 (420)
T ss_dssp ETTSEEEEEETTCTTSC--SEEEEE-----STTSCEEEEEEET---------TEEEE---EETTTEEEEEEEECCTTCCS
T ss_pred eCCCeEEEEEcCCCcCc--hhhhhc-----cCCCCceEEEeCC---------CCEEE---EecCCccEEEEeccCCCCCc
Confidence 99999999999887531 111111 0112234445554 55665 689999999999876321
Q ss_pred -------EEEEecCccceeceeeecCCCCc----EEeecCCCeEEEEcCCC
Q 013086 356 -------VAEVMDPNITTISPVNKLHPRDD----VLASGSSRSIFIWRPKE 395 (449)
Q Consensus 356 -------~~~~~~~~~~~v~~v~~~~~~~~----~l~s~sdg~i~iw~~~~ 395 (449)
...+..+ ...+..+ +|+|++. ++++|++|.+.+|++..
T Consensus 371 ~~~~~~~~~~~~~~-~~~v~~~-~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 371 PAIEFETPTFLVSN-DDAVSQF-CYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEECTTSCEEECCS-SCCCCEE-EEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cceeccCccEEccC-CcceEEE-EEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1123333 3677777 8999998 66666699999999864
No 48
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=281.69 Aligned_cols=303 Identities=15% Similarity=0.213 Sum_probs=216.9
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-----------eeEEEecccC------------CceeEEEEeeC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----------EKIVYGNIHS------------CIVNNIRFNPT 128 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-----------~~~~~~~~h~------------~~v~~~~~~~~ 128 (449)
|.+.|++++|+|+| .+||+|+.||.|+||++.+.. ....+ .+|. ..|++++|+|+
T Consensus 27 ~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 67899999999999 689999999999999998766 24444 6798 88999999998
Q ss_pred CC--CeEEEEeCCCeEEEEeCCCCceeeeeecCCC--C-----------------------------CCCCCcccceeEE
Q 013086 129 ND--GTVYAASSDGTVSCTDLETGLALSLMNVNPN--G-----------------------------WHGPRTWRMLYGM 175 (449)
Q Consensus 129 ~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~-----------------------------~~~~~~~~~i~~~ 175 (449)
+ .+|++++.|++|++||+.++........... + .....+...|.++
T Consensus 105 -~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 105 -KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp -CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred -CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 6 7899999999999999987543211000000 0 0001223459999
Q ss_pred EEecCCCEEEEEcCCCeEEEEECCCCCCccceE-----EeecCCCceEEEEEcCCCC-CEEEEEeCCCeEEEEEccCCCC
Q 013086 176 DINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-----LIHRKGSKVVGLHCNPIQP-ELLLSCGNDHFARIWDIRRLEA 249 (449)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 249 (449)
+|+|++++|++| .|+.|++||++......... ....+...|.+++|+| ++ .+|++|+.||.|++||+++...
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999999999999 79999999998533221111 1235566899999999 76 9999999999999999987654
Q ss_pred CC-ceeec-CCCC------------cEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCccceecCC-------CC
Q 013086 250 GS-SLCDL-PHKR------------VVNSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHD-------FN 307 (449)
Q Consensus 250 ~~-~~~~~-~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~-------~~ 307 (449)
.. ....+ .|.. .|.+++|+|++++|++++. +.|++||+++ ++............. ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 11 12222 4544 8999999999999999998 9999999987 554332211000000 00
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc------------------------
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN------------------------ 363 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------ 363 (449)
.....+.++|+|+ |.+++ +|+.|+.|++||+.+++.+. +..+.
T Consensus 341 ~i~~~~~~~~s~~---------~~~l~---s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 341 CIFDKFECCWNGS---------DSVVM---TGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGGCCCCEEECTT---------SSEEE---EECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred ccccceEEEECCC---------CCEEE---EeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccc
Confidence 0001234889998 77776 78999999999999998763 22221
Q ss_pred --------cceeceeeecCCCCcEEeecCCCeEEEEcCC
Q 013086 364 --------ITTISPVNKLHPRDDVLASGSSRSIFIWRPK 394 (449)
Q Consensus 364 --------~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~ 394 (449)
...+..+ +|+|++++||+++.+.+++|..+
T Consensus 408 ~~~~~~~~~~~i~~~-~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 408 ISVDSLDFNKKILHT-AWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EEGGGCCTTSCCCEE-EECSSSSEEEEECSSCEEEEECC
T ss_pred ccccccccCCceeEE-EECCCCCEEEEEecceeeeeccc
Confidence 1345566 89999999999996568888643
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-36 Score=302.76 Aligned_cols=310 Identities=18% Similarity=0.222 Sum_probs=254.6
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
.+.+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.++.....+ .+|...|++++|+|+ +++|++++.||.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence 47889999999999999999 68999999999999999998888777 589999999999999 9999999999999999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
|+.+++....+..+... |.+++|+|++.+|++++.||.|++||+.++..... ....+...|.+++|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDY---------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp ETTTCCEEEEEECCSSC---------EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE--EEECCSSCEEEEEEETT
T ss_pred ECCCCcEEEEEecCCCC---------EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE--EEcCCCCcEEEEEEEcC
Confidence 99999988887655443 99999999999999999999999999987643322 33445568999999996
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
++..|++++.||.|++||+.+......+. ..+...+.+++|+| ++.+|++++.||.|++||+.+++.... ...
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~ 226 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT----LEG 226 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE----EEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE----EcC
Confidence 67899999999999999998755433332 24558899999999 999999999999999999987654211 111
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc--EEe
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD--VLA 381 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--~l~ 381 (449)
.......+.|+|+ |.+++ +++.|+.|++||+.+++.+..+..+. ..+.++ +|+|++. +++
T Consensus 227 ----~~~~v~~~~~~~~---------~~~l~---~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~~~~ 288 (814)
T 3mkq_A 227 ----HMSNVSFAVFHPT---------LPIII---SGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCI-ATHPTGRKNYIA 288 (814)
T ss_dssp ----CSSCEEEEEECSS---------SSEEE---EEETTSCEEEEETTTCSEEEEECCSS-SSEEEE-EECTTCGGGEEE
T ss_pred ----CCCCEEEEEEcCC---------CCEEE---EEeCCCeEEEEECCCCcEEEEeecCC-CcEEEE-EEccCCCceEEE
Confidence 1112346889998 66666 68889999999999999999988776 677888 8999987 466
Q ss_pred ecCCCeEEEEcCCCchhhhhhhccceEEEEe
Q 013086 382 SGSSRSIFIWRPKEKSELVEQKEEMKIIVCG 412 (449)
Q Consensus 382 s~sdg~i~iw~~~~~~~~~~~~~~~~~~~c~ 412 (449)
+++|+.+.+|++..+.....+...+..+..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSG 319 (814)
T ss_dssp EEETTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred EEeCCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence 6668899999998877666665555555543
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-35 Score=267.11 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=227.6
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe---eeEEEecccCCceeEEEEeeCCCC-eEEEEeCCCeE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGTV 142 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v 142 (449)
....+|.+.|++++|+|++ .+|++++.|+.|+||++.+.. ..... .+|...|++++|+|+ +. +|++++.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN-TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC-CCcEEEEEcCCCeE
Confidence 4456899999999999998 689999999999999998766 22333 469999999999999 99 99999999999
Q ss_pred EEEeC-CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC---------CCCccceEEeec
Q 013086 143 SCTDL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART---------NSRSGEAILIHR 212 (449)
Q Consensus 143 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~ 212 (449)
++||+ .+++. ..+... .+...|.+++|+| +.++++++.|+.|++||+++ .+..... .
T Consensus 82 ~~wd~~~~~~~-~~~~~~-------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~ 148 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNN-------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----K 148 (342)
T ss_dssp EEECSSSSSSE-EECBSC-------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----S
T ss_pred EEEEeccCCce-Eecccc-------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----e
Confidence 99999 87765 333220 0122499999999 99999999999999999987 5544332 2
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC-CCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 290 (449)
+...+.+++|+| +. +++++.|+.|++||+++ ...........+...|.+++|+| ++++|++++.||.|++|+++.
T Consensus 149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 455899999998 55 99999999999999987 54433444446888999999999 999999999999999999987
Q ss_pred C--CCCCCCccceecCCC-----CccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc
Q 013086 291 G--NLDSPSREIVHSHDF-----NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 363 (449)
Q Consensus 291 ~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 363 (449)
. ............+.. ........+.|+|+ +++++ +++.|+.|++||+.+++.+..+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~h 293 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---------HKFLY---TAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---------TCCEE---EEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcCC---------CCEEE---EecCCceEEEEcCccHhHhhhhhccc
Confidence 6 110111111111111 01113457889997 66666 68899999999999999999998884
Q ss_pred cceeceeeecCCCCcEEeecC-CCe-EEEEc
Q 013086 364 ITTISPVNKLHPRDDVLASGS-SRS-IFIWR 392 (449)
Q Consensus 364 ~~~v~~v~~~~~~~~~l~s~s-dg~-i~iw~ 392 (449)
...+.++ + |++++|++|+ ||. .+.|.
T Consensus 294 ~~~v~~~-~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 294 EDSVVKI-A--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEE-E--ECSSEEEEEEECTHHHHCSS
T ss_pred CCCceEe-c--CCCCeEEEEecCCccccccc
Confidence 5888888 5 9999999999 998 44444
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.2e-36 Score=268.51 Aligned_cols=263 Identities=14% Similarity=0.159 Sum_probs=215.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|...|++++|+|+ +++|++++.||+|++||+.+++....+..+... +.+++|+|+++++++++.|+.|
T Consensus 52 ~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 52 RGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW---------VMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSC---------EEEEEECTTSSEEEEEETTCEE
T ss_pred cCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCcc---------EEEEEECCCCCEEEEEeCCCeE
Confidence 789999999999999 999999999999999999999888877655433 9999999999999999999999
Q ss_pred EEEECCCCCCccc-eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 194 YLVDARTNSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 194 ~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
++|++.+...... ......+...|.++.|++ ++ .+++++.|+.|++||+.+.+.. ....+|...|.+++|+|+++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEE--EEEcCCCCceEEEEECCCCC
Confidence 9999987643222 223455667899999997 54 5889999999999999875442 22237999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 273 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
+|++++.|+.|++||++++..... +..+. ....++|+|+ |.+++ +|+.|++|++||+.
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~---------~~~h~~~v~~v~~~p~---------~~~l~---s~s~d~~v~iwd~~ 256 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPN---------GNAFA---TGSDDATCRLFDLR 256 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEE---------ECCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEEETT
T ss_pred EEEEEeCCCcEEEEECCCCeeEEE---------EcCCcCCEEEEEEcCC---------CCEEE---EEcCCCcEEEEECC
Confidence 999999999999999988764211 11111 2347899998 66776 78999999999999
Q ss_pred CceEEEEEecCc-cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEEe
Q 013086 352 TGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCG 412 (449)
Q Consensus 352 ~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c~ 412 (449)
+++.+..+..+. ...+.++ +|+|++++|++|+ ||.|++||+.+++.+..+.+|...+.|-
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCcEEEEEccCCcccceEEE-EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence 998887775432 2357777 8999999999999 9999999999999888888888766653
No 52
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-35 Score=264.69 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=213.9
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
...+|...|++++|+|+ +++|++++.||.|++|++.+++....+..+.. .|.+++|+|++++|++++.|+
T Consensus 18 ~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSS---------CEEEEEECTTSSEEEEEETTS
T ss_pred EEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCC---------ceEEEEEcCCCCEEEEECCCC
Confidence 33789999999999999 99999999999999999999988877755443 399999999999999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
.|++||+.+++... ....+...|.+++|+| ++++|++|+.|+.|++||+++.+... ....|...|.+++|+|++
T Consensus 88 ~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 88 TLKIWDVSSGKCLK---TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp EEEEEETTTCCEEE---EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTS
T ss_pred EEEEEECCCCcEEE---EEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEE--EecCCCCcEEEEEEcCCC
Confidence 99999999876542 3445666899999999 99999999999999999998754322 223688999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 272 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
++|++++.||.|++||+++++.... ...........+.|+|+ +++++ +++.|+.|++||+.
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~~~~~~~~~---------~~~l~---~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKT-------LIDDDNPPVSFVKFSPN---------GKYIL---AATLDNTLKLWDYS 222 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEE-------ECCSSCCCEEEEEECTT---------SSEEE---EEETTTEEEEEETT
T ss_pred CEEEEEeCCCcEEEEECCCCceeeE-------EeccCCCceEEEEECCC---------CCEEE---EEcCCCeEEEEECC
Confidence 9999999999999999987764211 00011112235789998 66666 68899999999999
Q ss_pred CceEEEEEecCccceeceee-ecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 352 TGQLVAEVMDPNITTISPVN-KLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~-~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
+++.+..+.++......... ...+++.+|++|+ ||.|++||+.+++.+..+.+|...+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 99999998877633221111 2346788999999 999999999999999888888776544
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-36 Score=273.51 Aligned_cols=255 Identities=14% Similarity=0.167 Sum_probs=197.4
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeE---EEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
......+|...|++++|+|++ + +++++.||+|+|||+.+++... ....+|...|++++|+|+ +++|++++.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~-~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEK-G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTT-E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCC-C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCe
Confidence 345567899999999999998 5 5567789999999998765432 222579999999999999 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
|++||+++++.+..+..+.. .|.+++|++++. ++++++.||.|++||+++++..... ....+...+.++
T Consensus 163 v~iwd~~~~~~~~~~~~h~~---------~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~v 232 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYNAHSS---------EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-DFCASDTIPTSV 232 (357)
T ss_dssp EEEEETTTTEEEEEECCCSS---------CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-CCTTCCSCEEEE
T ss_pred EEEEECCCCcEEEEEcCCCC---------CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-eeccccccccch
Confidence 99999999998888865544 399999999875 7899999999999999988765432 334455679999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCcc
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSRE 299 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (449)
+|+|..+.+|++|+.|+.|++||+++.+....+ .+|...|++++|+|++ ++|++++.|+.|+|||++++++...
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--- 307 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--- 307 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---
T ss_pred hhhhcccceEEEeecccceeEEECCCCcEeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE---
Confidence 999955789999999999999999876553333 3688999999999987 5799999999999999988765321
Q ss_pred ceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 300 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
.. .......++|+|.+ +.+++ +++.|++|++||+.+..
T Consensus 308 ----~~--H~~~V~~vafsP~d--------~~~l~---s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 308 ----LS--HRDFVTGVAWSPLD--------HSKFT---TVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ----CC--CSSCEEEEEECSSS--------TTEEE---EEETTSCEEEEECC---
T ss_pred ----CC--CCCCEEEEEEeCCC--------CCEEE---EEcCCCeEEEEECCCCC
Confidence 11 11223578999843 55565 68899999999997543
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-36 Score=267.20 Aligned_cols=257 Identities=15% Similarity=0.173 Sum_probs=203.3
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
..+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++....+ .+|...|.+++|+|+ +.+|++++.|++|+
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKK-ASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SCEEEEEETTSCEE
T ss_pred ccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence 3467899999999999999999 68999999999999999999887777 689999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC------CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE------KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
+||++. ..+..+..+.. .+.+++++|. +..+++++.|+.|++||+++.+.. .....+...|
T Consensus 133 vwd~~~-~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~h~~~v 199 (319)
T 3frx_A 133 VWTIKG-QCLATLLGHND---------WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNI 199 (319)
T ss_dssp EEETTS-CEEEEECCCSS---------CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE---EEECCCCSCE
T ss_pred EEECCC-CeEEEEeccCC---------cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh---eeecCCCCcE
Confidence 999974 44444443322 3899999885 458999999999999999876543 2344566789
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
.+++|+| ++.+|++|+.||.|++||+++.+. +..+.+...|.+++|+|++.+|++++.+ .+++|++..+......
T Consensus 200 ~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 200 NTLTASP-DGTLIASAGKDGEIMLWNLAAKKA---MYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL 274 (319)
T ss_dssp EEEEECT-TSSEEEEEETTCEEEEEETTTTEE---EEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc
Confidence 9999999 999999999999999999987443 3334456789999999999999888755 6999999765432211
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 353 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~ 353 (449)
.................++|+|+ |++++ +|+.|+.|++||+.++
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spd---------g~~l~---sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSAD---------GQTLF---AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTT---------SSEEE---EEETTSCEEEEEEEEC
T ss_pred CccccccccCcCcceeEEEECCC---------CCEEE---EeecCceEEEEEEeec
Confidence 10000001111222357899999 88887 7999999999998764
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=284.29 Aligned_cols=293 Identities=15% Similarity=0.111 Sum_probs=207.8
Q ss_pred eeeeccCccEEEEEEeCCC-----CcEEEEEcCCCcEEEEeCcCCeee----------EEEecccCCceeEEEEeeCCCC
Q 013086 67 AVIRYHSRRVTCLEFHPTN-----NHILLSGDKKGQVGVWDFYKVSEK----------IVYGNIHSCIVNNIRFNPTNDG 131 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~-----~~~l~t~~~d~~i~vwd~~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~ 131 (449)
..+.+|.+.|.+++|+|++ ..+||+|+.||+|+|||+..+... .....+|...|++++|+++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--C
Confidence 4567889999999999971 258999999999999999765321 1123679999999999985 4
Q ss_pred eEEEEeCCCeEEEEeCCCCce-eeeeecCCCCCCCCCcccceeEE--EEecCC-CEEEEEcCCCeEEEEECCCCCCccce
Q 013086 132 TVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGM--DINPEK-GVVLVADNFGFLYLVDARTNSRSGEA 207 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 207 (449)
.|++|+.||+|++||++++.. ...+..+.. .|.++ +|++++ .+|++++.|++|++||+++.+....
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~---------~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~- 348 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS---------YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT- 348 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSS---------CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccc---------cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-
Confidence 899999999999999987643 333444433 38988 578887 8999999999999999998765432
Q ss_pred EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 013086 208 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 287 (449)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 287 (449)
...+.....|.+++|+| ++..+++++.|++|++||+++......+ .+|...|++|+|+|++++|++|+.||+|++||
T Consensus 349 ~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 349 TVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp EEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEE--EECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceee--ecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 23343333588999999 8999999999999999999875543333 36999999999999999999999999999999
Q ss_pred CCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC-CceEEEEEecCccce
Q 013086 288 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITT 366 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~ 366 (449)
+..+.+ ..... ............++|+|+. ..+. ... .+.+|+.. ++..+..+.+|. ..
T Consensus 426 ~~~~~~-~~~~~---~~~~~~~~~v~~v~~sp~g---------~~~~----~~~--~~~~~~~~~~g~~~~~l~gh~-~~ 485 (524)
T 2j04_B 426 AARRLL-HGIKN---SSATQKSLRLWKWDYSIKD---------DKYR----IDS--SYEVYPLTVNDVSKAKIDAHG-IN 485 (524)
T ss_dssp SCSSTT-TCC---------CCCCEEEECBCCSSS---------CEEE----ECC--CCCCCC-------------CC-CS
T ss_pred chHhhc-ccccc---CccceeeeEEEEeccCCCC---------CeEE----ccC--CceecccccCCcceeeecCCC-ce
Confidence 865321 11000 0000111122467888873 2111 111 12334332 567777787776 78
Q ss_pred eceeeecCCCCc---EEeecC-CCeEEEEcCCC
Q 013086 367 ISPVNKLHPRDD---VLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 367 v~~v~~~~~~~~---~l~s~s-dg~i~iw~~~~ 395 (449)
|.+| +|+|++. .||+|+ ||.|+||++.-
T Consensus 486 V~~V-afsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCT-KWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCE-EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEE-ECCCCCCccHHHHhhccCceEEEEEccc
Confidence 8899 9999964 999999 89999999864
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-36 Score=270.74 Aligned_cols=296 Identities=14% Similarity=0.168 Sum_probs=230.1
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
.|.++|.+++|+|+| ++++++..++.+.+|........... .+|...|++++|+|+ +++|++++ ||.|++||+.++
T Consensus 7 ~~~~~v~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 7 MGSKPAYSFHVTADG-QMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEEECCEEEECSSS-CEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTST
T ss_pred ccCCceeEEEECCCC-CEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCC
Confidence 356789999999999 67888777777777766554444444 469999999999999 99999998 999999999887
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
.....+.... ...+...+.+++|+|+++++++++.+|.|++||+.+..... ......+...+.+++|+| ++++|
T Consensus 83 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l 156 (337)
T 1gxr_A 83 GNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAISP-DSKVC 156 (337)
T ss_dssp TCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-EEEEECSSSCEEEEEECT-TSSEE
T ss_pred Cceeeeeccc----ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-eeecccCCCceEEEEECC-CCCEE
Confidence 6433322100 00122349999999999999999999999999999876322 224455666899999999 99999
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 310 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (449)
++++.||.|++||+++.+.... ...|...|.+++|+|++++|++++.||.|++||+++++.... . ....
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------~--~~~~ 225 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-------H--DFTS 225 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-------E--ECSS
T ss_pred EEEeCCCcEEEEeCCCCceeee--eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-------e--cCCC
Confidence 9999999999999987543222 235889999999999999999999999999999987764221 1 1122
Q ss_pred cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEE
Q 013086 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 389 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~ 389 (449)
....+.|+|+ +.+++ +++.++.|++||+.+++.. .+..+. ..+..+ +|+|++++|++++ ||.|+
T Consensus 226 ~v~~~~~s~~---------~~~l~---~~~~~~~i~~~~~~~~~~~-~~~~~~-~~v~~~-~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 226 QIFSLGYCPT---------GEWLA---VGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSL-KFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp CEEEEEECTT---------SSEEE---EEETTSCEEEEETTSSCEE-EECCCS-SCEEEE-EECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCC---------CCEEE---EEcCCCcEEEEECCCCCeE-EEcCCc-cceeEE-EECCCCCEEEEecCCCcEE
Confidence 2357889998 66666 6788999999999988764 444544 678888 8999999999999 99999
Q ss_pred EEcCCCchhhhhh
Q 013086 390 IWRPKEKSELVEQ 402 (449)
Q Consensus 390 iw~~~~~~~~~~~ 402 (449)
+|++.+++.+...
T Consensus 291 ~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 291 AWRTPYGASIFQS 303 (337)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCeEEEEe
Confidence 9999998876443
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-36 Score=281.68 Aligned_cols=285 Identities=11% Similarity=0.052 Sum_probs=221.6
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.+++++|+|++ ++|++|+.|+.|++||+.+......+ ..| ..+....|+++ +++|++++.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecC-CeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceee
Confidence 45589999999 57999999999999999876655444 334 44555577888 9999999999999999999888776
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
.+..+.. .|.+++|+|++++|++++.|+.|++||+.+++... ....+...|.+++|+| ++.+|++++
T Consensus 134 ~~~~h~~---------~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~-~~~~l~s~~ 200 (420)
T 3vl1_A 134 IDQAHVS---------EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR---TLIGHRATVTDIAIID-RGRNVLSAS 200 (420)
T ss_dssp ETTSSSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE---EEECCSSCEEEEEEET-TTTEEEEEE
T ss_pred ecccccC---------ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce---EEcCCCCcEEEEEEcC-CCCEEEEEc
Confidence 6544433 39999999999999999999999999999877653 3345666899999999 999999999
Q ss_pred CCCeEEEEEccCCCCCCceeec-CCCC---------------------cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 235 NDHFARIWDIRRLEAGSSLCDL-PHKR---------------------VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~-~~~~---------------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.|+.|++||+++.+....+... .+.. .+.+++|+|++++|++++.||.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999875543333221 2333 44445567899999999999999999998776
Q ss_pred CCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc-eecccCCCCCCcceEEEECCCceE-EEEEecCccceecee
Q 013086 293 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQL-VAEVMDPNITTISPV 370 (449)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v 370 (449)
.... ...........++|+|+ +. +++ +|+.|+.|++||+.+++. +..+..++...+..+
T Consensus 281 ~~~~-------~~~~~~~~v~~~~~~~~---------~~~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 281 QTIQ-------LPSKFTCSCNSLTVDGN---------NANYIY---AGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEEE-------ECCTTSSCEEEEEECSS---------CTTEEE---EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred eeEE-------cccccCCCceeEEEeCC---------CCCEEE---EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 4211 01111123457899998 54 555 688999999999998754 777877666777777
Q ss_pred eecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 371 NKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+.+++++|++++ ||.|++|++....
T Consensus 342 --~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 342 --YFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp --EEETTEEEEEETTTEEEEEEEECCTT
T ss_pred --EeCCCCEEEEecCCccEEEEeccCCC
Confidence 556788999999 9999999988743
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.9e-36 Score=268.80 Aligned_cols=258 Identities=14% Similarity=0.126 Sum_probs=189.8
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-eEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeEEE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSC 144 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~i 144 (449)
..+.+|.+.|++++|+|+| ++||+|+.|++|+|||+.++.. ......+|...|.+++|++. .+++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4567999999999999999 6899999999999999987653 22333789999999999752 2789999999999999
Q ss_pred EeCCCCce--eeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 145 TDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 145 wd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
||++++.. ...+..+. ..|.+++|+|+ +.+|++++.|+.|++||++.............+...+.++
T Consensus 86 Wd~~~~~~~~~~~~~~h~---------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHD---------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp ECCSSSCCCEEEEECCCS---------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred EECCCCcceEEEEccCCC---------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 99998743 33333222 23999999998 7899999999999999998753211111223455579999
Q ss_pred EEcCCC-----------------CCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCC----CEEEEee
Q 013086 221 HCNPIQ-----------------PELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG----SKILTTS 278 (449)
Q Consensus 221 ~~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~----~~l~~~~ 278 (449)
+|+| + +.+|++|+.|+.|++||++.......+..+ +|...|.+++|+|++ .+|++++
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 157 SWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp EECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 9998 4 468999999999999999643221223223 799999999999986 8999999
Q ss_pred CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 279 QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
.|+.|++|++.+.............+ ......++|+|+ |++++ +++.|+.|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~----~~~v~~v~~sp~---------g~~la---s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKF----NDVVWHVSWSIT---------ANILA---VSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEEC----SSCEEEEEECTT---------TCCEE---EEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcC----CCcEEEEEEcCC---------CCEEE---EEcCCCeEEEEEEC
Confidence 99999999997632111011111111 123457899998 66776 78899999999975
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=265.61 Aligned_cols=266 Identities=16% Similarity=0.222 Sum_probs=198.9
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
..+|...|.+++|+|++ ++|++|+.|+.|+||++.... ....+ .+|...|.+++|+|+ +++|++++.|++|++||
T Consensus 57 ~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPS-GNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred ccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCC-CCEEEEEECCCeEEEEE
Confidence 46899999999999999 689999999999999988764 33344 789999999999999 99999999999999999
Q ss_pred CCCCcee---eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 147 LETGLAL---SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 147 ~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+.++... ..+..+. ..|.+++|+|++.+|++++.|+.|++||++...... ......+...|.+++|+
T Consensus 134 ~~~~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~-~~~~~~h~~~v~~l~~s 203 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHT---------QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC-CATLEGHESTVWSLAFD 203 (345)
T ss_dssp ECTTSCEEEEEEECCCC---------SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEEC
T ss_pred CCCCCCeEEEEEecCcC---------CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE-EEEecCCCCceEEEEEC
Confidence 9876432 2332222 239999999999999999999999999998754321 22445566789999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCc------------eeec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSS------------LCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
| ++++|++|+.|+.|++||......... +..+ .|...|.+++|+|++..|++++.|+.|++|+..
T Consensus 204 p-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 204 P-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp T-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred C-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 9 999999999999999999754322111 1111 278899999999999999999999999999997
Q ss_pred CCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEE
Q 013086 290 FGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
.+............+....+ ....+++|+|+. ..+++ +|+.|++|++|++.+++....+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~--------~~~la---S~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE--------PGLLA---SCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS--------TTEEE---EEETTSCEEEEEECC-------
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCC--------ceEEE---EcCCCCcEEEEEecCCCCcccc
Confidence 65432211111111111122 223578999983 13555 6899999999999988765543
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-36 Score=276.50 Aligned_cols=273 Identities=14% Similarity=0.153 Sum_probs=213.9
Q ss_pred EEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE
Q 013086 98 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 177 (449)
Q Consensus 98 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 177 (449)
+..|+.........+ .+|.+.|++++|+|+ +++|++|+.||+|++||+.+++....+..+... |.+++|
T Consensus 48 ~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~---------v~~~~~ 116 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW---------VMECAF 116 (380)
T ss_dssp CCCCCCCCCEEEEEE-CCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTT---------CCCCEE
T ss_pred ccccccceeEEeecc-cccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCC---------EEEEEE
Confidence 444555555555555 789999999999999 999999999999999999999988888765443 899999
Q ss_pred ecCCCEEEEEcCCCeEEEEECCCCCCc----cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce
Q 013086 178 NPEKGVVLVADNFGFLYLVDARTNSRS----GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL 253 (449)
Q Consensus 178 ~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 253 (449)
+|++++|++|+.|+.+++||+.+.... ........|...+.++.|+|..+..|++|+.|+.|++||+++++....+
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 999999999999999999999753211 1111234556689999999955678999999999999999875543322
Q ss_pred ee---cCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCC-CCCCCCccceecCCCCccccceeeeeccCCCCCceEE
Q 013086 254 CD---LPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG-NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 328 (449)
Q Consensus 254 ~~---~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (449)
.. .+|...|.++.|++ ++.+|++|+.|+.|++||++.. .... ... .. ......+.|+|+
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~----~~~--~h--~~~v~~v~~~p~-------- 260 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR----TYH--GH--EGDINSVKFFPD-------- 260 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE----EEC--CC--SSCCCEEEECTT--------
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE----EEC--Cc--CCCeEEEEEecC--------
Confidence 11 26888999999987 8899999999999999999743 2211 111 11 112347899998
Q ss_pred EcceecccCCCCCCcceEEEECCCceEEEEEecCcc------ceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhh
Q 013086 329 IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 401 (449)
Q Consensus 329 ~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~ 401 (449)
|.+++ +|+.|++|++||+.+++.+..+..+.. ..+.++ +|+|+|++|++|+ ||.|++||+.+++.+..
T Consensus 261 -~~~l~---s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 261 -GQRFG---TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV-AFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp -SSEEE---EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE-EECSSSSEEEEECTTSCEEEEETTTCCEEEE
T ss_pred -CCeEE---EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE-EECCCCCEEEEEECCCCEEEEECCCCceEEE
Confidence 77777 799999999999999999888865432 236677 8999999999999 99999999988876654
Q ss_pred h
Q 013086 402 Q 402 (449)
Q Consensus 402 ~ 402 (449)
+
T Consensus 336 ~ 336 (380)
T 3iz6_a 336 L 336 (380)
T ss_dssp E
T ss_pred E
Confidence 4
No 61
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.3e-35 Score=263.48 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=213.5
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+|...|++++|+|+ +.+|++|+.||+|++||..+++....+..+.. .+.+++|+|++.++++++.|+.+
T Consensus 61 ~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~---------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT---------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSS---------CCCEEEECTTSSEEEEESTTSEE
T ss_pred cCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCC---------CEEEEEECCCCCEEEEeeCCCCE
Confidence 789999999999999 89999999999999999999888777765433 38999999999999999999999
Q ss_pred EEEECCCCCC---ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-
Q 013086 194 YLVDARTNSR---SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP- 269 (449)
Q Consensus 194 ~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~- 269 (449)
++|++..... .........|...|.+++|+| ++..|++++.|++|++||+.+++.... ..+|...|.+++|+|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQS--FHGHGADVLCLDLAPS 207 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECCC
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeC
Confidence 9999875421 112223445666899999999 899999999999999999987544222 237999999999988
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEE
Q 013086 270 -SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 347 (449)
Q Consensus 270 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~i 347 (449)
++.+|++|+.||.|++||+++++.... +..+ .....+.|+|+ +.+++ +|+.|++|++
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~---------~~~h~~~v~~v~~~p~---------~~~l~---s~s~D~~v~l 266 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQA---------FETHESDVNSVRYYPS---------GDAFA---SGSDDATCRL 266 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEE---------ECCCSSCEEEEEECTT---------SSEEE---EEETTSCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEE---------ecCCCCCeEEEEEeCC---------CCEEE---EEeCCCeEEE
Confidence 578999999999999999998765221 1111 12347889998 66666 7899999999
Q ss_pred EECCCceEEEEEecCc-cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 348 IDITTGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 348 wd~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
||+.+++.+..+..+. ...+..+ +|+|++++|++|+ |+.|++||+.+++.+..+.+|...+.|
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSV-DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 331 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred EECCCCcEEEEEcCCCcccceeEE-EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence 9999998887775443 2345666 8999999999999 999999999999888888887766555
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=265.85 Aligned_cols=298 Identities=13% Similarity=0.104 Sum_probs=226.1
Q ss_pred ccceeeeccCccEEEEEEeCCC--CcEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~--~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
..+..+.+|.+.|++++|+|++ ..+|++|+.||.|+|||+.+ +........+|...|++++|+|+ +++|++++.||
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SSEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CCEEEEEcCCC
Confidence 3457889999999999999993 26899999999999999987 55553444789999999999998 99999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE--ecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI--NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.|++||+.+++...... +. ..|.+++| ++++.+|++++.||.|++||+++++..... . ....+.
T Consensus 109 ~v~iwd~~~~~~~~~~~-~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~---~~~~~~ 174 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQ-HD---------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL-Q---LPERCY 174 (368)
T ss_dssp EEEEEETTTTEEEEEEE-CS---------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE-E---CSSCEE
T ss_pred cEEEEEcCCCCceeecc-cc---------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE-e---cCCCce
Confidence 99999999988776443 22 23999999 899999999999999999999988765322 2 223677
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCE----EEEeeCCCcEEEEeCCCCCCC
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK----ILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~~ 294 (449)
++.+.+ ..+++++.++.+.+|+++............+...+.++.+.++... +++++.||.|++||++.....
T Consensus 175 ~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 175 CADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred EEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 777765 5888899999999999986433222212234455666776665544 999999999999999876321
Q ss_pred CCCccceecCCC-------Ccc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccce
Q 013086 295 SPSREIVHSHDF-------NRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 366 (449)
Q Consensus 295 ~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 366 (449)
..... ...+.. ..+ .....++|+|+ +++++ +++.|+.|++||+.+++.+..+..|. ..
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 317 (368)
T 3mmy_A 252 KDNFT-FKCHRSNGTNTSAPQDIYAVNGIAFHPV---------HGTLA---TVGSDGRFSFWDKDARTKLKTSEQLD-QP 317 (368)
T ss_dssp HHSEE-EECSEEC----CCCEEECCEEEEEECTT---------TCCEE---EEETTSCEEEEETTTTEEEEECCCCS-SC
T ss_pred cccee-eeeeecccccccccccccceEEEEEecC---------CCEEE---EEccCCeEEEEECCCCcEEEEecCCC-CC
Confidence 10000 001100 000 12457899998 66666 78899999999999999999998776 78
Q ss_pred eceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 367 ISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
+..+ +|+|++++|++|+ |+..+.|++.
T Consensus 318 v~~~-~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 318 ISAC-CFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEE-EECTTSSCEEEEECCCSTTCGGGC
T ss_pred ceEE-EECCCCCeEEEEeccccccccccc
Confidence 8888 9999999999998 7755555443
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-35 Score=305.91 Aligned_cols=296 Identities=19% Similarity=0.229 Sum_probs=245.8
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.....+.+|.+.|++++|+|+| ++|++|+.||.|+|||+.++.....+ .+|...|.+++|+|+ +++|++++.||.|+
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD-DSYIATCSADKKVK 682 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred cceEEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC-CCEEEEEeCCCeEE
Confidence 3445788999999999999999 68999999999999999999888877 689999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+||+.+++.+..+..+... +.+++|+| ++.++++++.|+.|++||+.++.... ....+...|.+++
T Consensus 683 vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQ---------VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCR 750 (1249)
T ss_dssp EEETTTCCEEEEEECCSSC---------EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEE
T ss_pred EEECCCCceEEEEcCCCCc---------EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEE
Confidence 9999999998888765443 99999999 55689999999999999999876542 3445667899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-----------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-----------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
|+| ++.+|++++.||.|++||+++......+... .....+.+++|+|++..+++++ ++.+.+||+.+
T Consensus 751 ~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~ 828 (1249)
T 3sfz_A 751 FSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT 828 (1249)
T ss_dssp ECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT
T ss_pred Eec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC
Confidence 999 9999999999999999999875443222111 1234788999999999999887 68999999988
Q ss_pred CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceecee
Q 013086 291 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPV 370 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 370 (449)
+..... ...........+.|+|+ +.+++ +++.++.|++||+.++..+..+.+|. ..+.++
T Consensus 829 ~~~~~~-------~~~~~~~~v~~~~~sp~---------~~~l~---~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v 888 (1249)
T 3sfz_A 829 SGLLAE-------IHTGHHSTIQYCDFSPY---------DHLAV---IALSQYCVELWNIDSRLKVADCRGHL-SWVHGV 888 (1249)
T ss_dssp CCEEEE-------EECSSSSCCCEEEECSS---------TTEEE---EECSSSCEEEEETTTTEEEEEECCCS-SCEEEE
T ss_pred CCceeE-------EcCCCCCceEEEEEcCC---------CCEEE---EEeCCCeEEEEEcCCCceeeecCCCc-cceEEE
Confidence 764221 11111222347889998 66666 68889999999999999999998876 778888
Q ss_pred eecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 371 NKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+|+|++++|++++ ||.|++|++.++.
T Consensus 889 -~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 889 -MFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp -EECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred -EECCCCCEEEEEeCCCeEEEEEccccc
Confidence 8999999999999 9999999987544
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-35 Score=308.47 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=251.1
Q ss_pred CCCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEE
Q 013086 57 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYA 135 (449)
Q Consensus 57 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s 135 (449)
.|.......+..+.+|.+.|++++|+|++ ++|++|+.|+.|+|||+.++.....+ .+|...|.+++|+|+ +..++++
T Consensus 641 vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 641 VFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEE
Confidence 34445566778899999999999999999 68999999999999999999888877 689999999999995 2568999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce--------
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-------- 207 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------- 207 (449)
++.|+.|++||+.+++....+..+.. .|.+++|+|+++++++++.||.|++||+.++......
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~---------~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 789 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTN---------SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSS---------CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred EeCCCeEEEEECCCcchhheecCCCC---------CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence 99999999999999998887765443 3999999999999999999999999998765321110
Q ss_pred -------------------------------------------E-EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 208 -------------------------------------------I-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 208 -------------------------------------------~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
. ....+...+.+++|+| ++.++++++.||.|++||
T Consensus 790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEE
T ss_pred cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 0 0113456789999999 999999999999999999
Q ss_pred ccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccc-----------------------
Q 013086 244 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI----------------------- 300 (449)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------------- 300 (449)
+.+... .....+|...|.+++|+|++++|++++.||.|++||+.++.........
T Consensus 869 ~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 869 IDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp TTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred cCCCce--eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 986443 2222379999999999999999999999999999998643221100000
Q ss_pred --eecCC----CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecC
Q 013086 301 --VHSHD----FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 301 --~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
..... .........++|+|+ |.+++ +|+.+|.|++||+.+++....+.+|. ..+.++ +|+
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~---------g~~l~---~g~~~g~i~i~d~~~~~~~~~~~~h~-~~v~~l-~~s 1012 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPH---------LEYVA---FGDEDGAIKIIELPNNRVFSSGVGHK-KAVRHI-QFT 1012 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTT---------SSEEE---EEETTSCCEEEETTTTSCEEECCCCS-SCCCCE-EEC
T ss_pred EEEecCcceEEEcccCcEEEEEEcCC---------CCEEE---EEcCCCCEEEEEcCCCceeeecccCC-CceEEE-EEC
Confidence 00000 000112345677877 66666 68899999999999999998888776 778888 899
Q ss_pred CCCcEEeecC-CCeEEEEcCCCchhhh
Q 013086 375 PRDDVLASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 375 ~~~~~l~s~s-dg~i~iw~~~~~~~~~ 400 (449)
|++++|++++ ||.|++|++.+++...
T Consensus 1013 ~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 1013 ADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp SSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 9999999999 9999999999987654
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-34 Score=269.06 Aligned_cols=285 Identities=18% Similarity=0.276 Sum_probs=219.4
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
...+|...|++++| ++ .+|++|+.||.|++||+.++.....+ .+|...|.+++| + +++|++|+.||+|++||+
T Consensus 128 ~~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C-SSEEEEEETTSCEEEEES
T ss_pred cccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEEC
Confidence 34567788999988 56 68999999999999999998888777 689999999999 4 789999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
.+++....+..+.. .|.+++|+ +..+++++.||.|++||+.+............+...|.++++ ++
T Consensus 201 ~~~~~~~~~~~h~~---------~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~ 266 (435)
T 1p22_A 201 NTGEMLNTLIHHCE---------AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DD 266 (435)
T ss_dssp SSCCEEEEECCCCS---------CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ET
T ss_pred CCCcEEEEEcCCCC---------cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CC
Confidence 99998887765443 38999986 469999999999999999987765433445566678999999 56
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
+++++|+.||.|++||+++.+....+ .+|...|.++.| ++.+|++|+.||.|++||+++++.... +.
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~---------~~ 333 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---------LE 333 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE---------EC
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEE--cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE---------Ee
Confidence 89999999999999999875443222 368899999999 578999999999999999998765221 11
Q ss_pred cccc-ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce---------EEEEEecCccceeceeeecCCCC
Q 013086 308 RHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ---------LVAEVMDPNITTISPVNKLHPRD 377 (449)
Q Consensus 308 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~v~~~~~~~ 377 (449)
.+.. ...+.| .+.+++ +|+.||.|++||+.++. .+..+.+|. ..+.++ +| ++
T Consensus 334 ~h~~~v~~~~~-----------~~~~l~---sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l-~~--~~ 395 (435)
T 1p22_A 334 GHEELVRCIRF-----------DNKRIV---SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS-GRVFRL-QF--DE 395 (435)
T ss_dssp CCSSCEEEEEC-----------CSSEEE---EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS-SCCCCE-EE--CS
T ss_pred CCcCcEEEEEe-----------cCCEEE---EEeCCCcEEEEECCCCCCccccccchheeeccCCC-CCeEEE-Ee--CC
Confidence 1111 123444 255565 68899999999998776 788887776 678877 67 78
Q ss_pred cEEeecC-CCeEEEEcCCCchhhhhhhc
Q 013086 378 DVLASGS-SRSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 378 ~~l~s~s-dg~i~iw~~~~~~~~~~~~~ 404 (449)
.+|++|+ ||.|++||+.+.........
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SCEEECCSSSEEEEEC------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence 8999999 99999999988776554443
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-35 Score=293.06 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=173.0
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
....+|.+.|++++|+|++ ++||+|+.||.|+||+..+....... .|...|.+++|+| +++|++++.|++|++||
T Consensus 11 ~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK--GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp EEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET--TTEEEEEETTCEEEEEE
T ss_pred ccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC--CCEEEEEECcCeEEEEE
Confidence 3456899999999999999 69999999999999999876655443 4888999999999 55999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce--------EEeecCCCceE
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA--------ILIHRKGSKVV 218 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~v~ 218 (449)
+.+++.+..+..+ ..|.+++|+|+++++++|+.||.|++||+.+....... .....+...|.
T Consensus 86 ~~~~~~~~~~~~~----------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 86 LYSQKVLTTVFVP----------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV 155 (902)
T ss_dssp TTTCSEEEEEECS----------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred CCCCcEEEEEcCC----------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence 9999888777522 13999999999999999999999999999886542100 01134556899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee----------------cCCCCcEEEEEEcCCCCEEEEeeCCCc
Q 013086 219 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----------------LPHKRVVNSAYFSPSGSKILTTSQDNR 282 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~ 282 (449)
+++|+|.++..|++|+.||.| +||+++.+....+.. ..|...|.+++|+|+|.+|++++.||.
T Consensus 156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 999999546799999999999 999987544222211 023577999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 013086 283 LRIWDSIFGNL 293 (449)
Q Consensus 283 i~vwd~~~~~~ 293 (449)
|++||+++++.
T Consensus 235 i~lWd~~~g~~ 245 (902)
T 2oaj_A 235 LVFWDANSGHM 245 (902)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 99999998765
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-33 Score=264.81 Aligned_cols=285 Identities=19% Similarity=0.291 Sum_probs=226.0
Q ss_pred cceeeeccCccE-EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 65 NCAVIRYHSRRV-TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V-~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
....+.+|.+.| .++.+ ++ .+|++|+.||.|++||+.++.....+ .+|...|.+++|+ ++++++|+.||+|+
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~---~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR---DNIIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE---TTEEEEEETTSCEE
T ss_pred eeEEecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec---CCEEEEEeCCCeEE
Confidence 346789999875 66555 56 58999999999999999998887777 6899999999997 56999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
+||+.+++....+..+.. .|.+++++ +..+++++.||.|++||+.+++... ....+...+.++++
T Consensus 183 vwd~~~~~~~~~~~~h~~---------~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTS---------TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH---VLMGHVAAVRCVQY- 247 (445)
T ss_dssp EEETTTTEEEEEECCCSS---------CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE---EEECCSSCEEEEEE-
T ss_pred EEECCcCcEEEEECCCCC---------cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE---EEcCCcccEEEEEE-
Confidence 999999998887765443 38888885 6789999999999999999876543 33456668999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
++.++++|+.||.|++||+++.+.... ..+|...|.++.| ++.+|++++.|+.|++||+++++....
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~------- 314 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPETETCLHT--LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT------- 314 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGGGTEEEEE--ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred --CCCEEEEEcCCCEEEEEECCCCcEeEE--ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-------
Confidence 568899999999999999987544222 2368899999999 889999999999999999988765221
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC--ccceeceeeecCCCCcEEe
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP--NITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~ 381 (449)
+..+... ...+...+.+++ +|+.|+.|++||+.+++.+..+..+ +...+.++ +|+ +++|+
T Consensus 315 --~~~~~~~----------v~~~~~~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~l~ 376 (445)
T 2ovr_B 315 --LTGHQSL----------TSGMELKDNILV---SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-QFN--KNFVI 376 (445)
T ss_dssp --ECCCCSC----------EEEEEEETTEEE---EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE-EEC--SSEEE
T ss_pred --EcCCccc----------EEEEEEeCCEEE---EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE-EEC--CCEEE
Confidence 0111111 111222355666 6889999999999999999998863 33667766 664 67999
Q ss_pred ecC-CCeEEEEcCCCchhhhhh
Q 013086 382 SGS-SRSIFIWRPKEKSELVEQ 402 (449)
Q Consensus 382 s~s-dg~i~iw~~~~~~~~~~~ 402 (449)
+|+ ||.|++|++.+++.+..+
T Consensus 377 s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 377 TSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEETTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCeEEEEECCCCceeeee
Confidence 999 999999999999877766
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-33 Score=255.30 Aligned_cols=261 Identities=14% Similarity=0.164 Sum_probs=198.7
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.....+.+|...|++++|+|++ .+|++|+.|++|++||+.++.....+ .+|...|.+++|+|+ +++|++++.|++|+
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPD-NRQILSAGAEREIK 143 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSS-TTEEEEEETTSCEE
T ss_pred cccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCC-CCEEEEEcCCCEEE
Confidence 3457889999999999999998 68999999999999999998887777 689999999999999 99999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC----------CEEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK----------GVVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
+||+..... ..... ...+...+.+++|+|++ .++++++.|+.|++||... . .......+
T Consensus 144 ~wd~~~~~~-~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~h 212 (343)
T 2xzm_R 144 LWNILGECK-FSSAE------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---IRYTFKAH 212 (343)
T ss_dssp EEESSSCEE-EECCT------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---EEEEEECC
T ss_pred EEeccCCce-eeeec------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---eeEEEcCc
Confidence 999984332 22211 01122349999999987 7899999999999999432 1 12234556
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
...|.+++|+| ++.+|++|+.||.|++||++..... ...+.+...|.+++|+|++.+|+++ .|+.|++||+.+++.
T Consensus 213 ~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 213 ESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYP--QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSC--SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCS
T ss_pred cccceEEEECC-CCCEEEEEcCCCeEEEEECCCCccc--ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCC
Confidence 66899999999 9999999999999999999543332 2223355679999999999887655 588899999987765
Q ss_pred CC--CCc--cceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 294 DS--PSR--EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 294 ~~--~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
.. ... .........++ .....++|+|+ |++++ +|+.|+.|++|++.++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------g~~l~---sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNAL---------GKKLF---AGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSEEECCCCSGGGBTTBCCSCCCEEEEEECSS---------SCCEE---EEETTSEEEEEEEEEEE
T ss_pred CceEEeecCcchhhhhhcCCCCceEEEEECCC---------CCeEE---EecCCceEEEEEEEccC
Confidence 32 000 00000011112 22357899998 77777 78999999999987653
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-34 Score=264.86 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=195.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
..|++++|+|+| ++|++|+.|+.|+|||+.++.....+ .+|...|.+++|+|+ +.+|++++.|++|++||+++++..
T Consensus 124 ~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 124 LYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp CBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeE
Confidence 359999999999 68999999999999999998877776 789999999999999 999999999999999999999887
Q ss_pred eeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceE----EeecCCCceEEEEEcCCCCC
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAI----LIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~ 228 (449)
..+.... .+.+++|+| ++.+|++++.|+.|++||++++....... ....+...|.+++|+| ++.
T Consensus 201 ~~~~~~~----------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~ 269 (393)
T 1erj_A 201 LTLSIED----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQ 269 (393)
T ss_dssp EEEECSS----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSS
T ss_pred EEEEcCC----------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCC
Confidence 7665432 289999999 89999999999999999999876443221 1134566899999999 999
Q ss_pred EEEEEeCCCeEEEEEccCCCCC---------C-ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 229 LLLSCGNDHFARIWDIRRLEAG---------S-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~---------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+|++|+.|+.|++||+++.... . .....+|...|.+++|+|++.+|++++.|+.|++||+.+++....
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~-- 347 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-- 347 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE--
Confidence 9999999999999999764321 1 122337899999999999999999999999999999988764211
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
...+ ......+.|++... +...+.+++ +|+.|++|+||++..
T Consensus 348 --l~~h----~~~v~~v~~~~~~~---~~p~~~~l~---sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 348 --LQGH----RNSVISVAVANGSS---LGPEYNVFA---TGSGDCKARIWKYKK 389 (393)
T ss_dssp --EECC----SSCEEEEEECSSCT---TCTTCEEEE---EEETTSEEEEEEEEE
T ss_pred --ECCC----CCCEEEEEecCCcC---cCCCCCEEE---EECCCCcEEECcccc
Confidence 1111 11223566665311 000145555 789999999999754
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-34 Score=281.29 Aligned_cols=311 Identities=15% Similarity=0.184 Sum_probs=237.6
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC---ceeEEEEeeCCCCeEEEEeCCC
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~dg 140 (449)
..+..+.+|...|.+++|+|+++.+|++++.|+.|++||+.+......+ .+|.. .|.+++|+|+++++|++++.||
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 4567788999999999999999558999999999999999998887777 67988 9999999997578999999999
Q ss_pred eEEEEeCCCCceeeee-e---cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE--------
Q 013086 141 TVSCTDLETGLALSLM-N---VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-------- 208 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------- 208 (449)
.|++||+.+++.+..+ . .+. ..|.+++|+ ++.+|++++.|+.|++||+++++......
T Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIEDDQEPVQ---------GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp CEEEEETTTCCEEEECCBTTBCCC---------SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred eEEEEECCCCCEeEEecccccccC---------CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 9999999999888776 3 222 239999999 99999999999999999998654321110
Q ss_pred ----------------------------------EeecCC---------------------------------CceEEEE
Q 013086 209 ----------------------------------LIHRKG---------------------------------SKVVGLH 221 (449)
Q Consensus 209 ----------------------------------~~~~~~---------------------------------~~v~~~~ 221 (449)
....+. ..|.+++
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~ 379 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence 011122 2344444
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCC-------------------------------CCCceeecCCCCcEEEEEEcCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLE-------------------------------AGSSLCDLPHKRVVNSAYFSPS 270 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------~~~~~~~~~~~~~v~~~~~~~~ 270 (449)
| + ++..|++++.|+.|++||+.+.. ....+..+.+...+.+++|+
T Consensus 380 ~-~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 455 (615)
T 1pgu_A 380 N-S-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-- 455 (615)
T ss_dssp C-C-STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--
T ss_pred E-C-CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--
Confidence 4 2 35566666667777777665422 12223333466788889998
Q ss_pred CCEEEEeeC-CCcEEEEeCCCCCCCCCCccceecCCCCc-cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 271 GSKILTTSQ-DNRLRIWDSIFGNLDSPSREIVHSHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 271 ~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
+++|++++. |+.|++||+.+++... ..+.. ......+.|+|+ |++++ +++.|+.|++|
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~---------g~~l~---~~~~dg~i~iw 515 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF--------DLKTPLRAKPSYISISPS---------ETYIA---AGDVMGKILLY 515 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE--------ECSSCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEE
T ss_pred CCEEEEeecCCCeEEEEECCCccccc--------cccCCccCceEEEEECCC---------CCEEE---EcCCCCeEEEe
Confidence 889999999 9999999998654310 11111 223357899998 77777 78899999999
Q ss_pred ECCCceEEEEEecCccceeceeeecCC----------CCcEEeecC-CCeEEEEcCCCc-hhhhhhhccceEEE
Q 013086 349 DITTGQLVAEVMDPNITTISPVNKLHP----------RDDVLASGS-SRSIFIWRPKEK-SELVEQKEEMKIIV 410 (449)
Q Consensus 349 d~~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~~l~s~s-dg~i~iw~~~~~-~~~~~~~~~~~~~~ 410 (449)
|+.+++.+..+.+.+...+.++ +|+| ++++|++|+ ||.|++|++.++ +.+..+.+|...+.
T Consensus 516 ~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 588 (615)
T 1pgu_A 516 DLQSREVKTSRWAFRTSKINAI-SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 588 (615)
T ss_dssp ETTTTEEEECCSCCCSSCEEEE-EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE
T ss_pred eCCCCcceeEeecCCCCceeEE-EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceE
Confidence 9999999998887344888888 9999 999999999 999999999998 67777777665443
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-34 Score=260.49 Aligned_cols=264 Identities=15% Similarity=0.166 Sum_probs=205.5
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC--CeeeEEEecccCCceeEEEEeeCC-CCeEEEEeCCCe
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGT 141 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~ 141 (449)
.+..+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.. ......+ .+|...|++++|+++. +.+|++++.||.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 457899999999999999999 6899999999999999984 3444444 6899999999998642 689999999999
Q ss_pred EEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 142 VSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 142 v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
|++||+.+++ ....+..+.. .+.+++|+|+ +.++++++.|+.|++||++....... .....+...|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v 150 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSA---------SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGV 150 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSS---------CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE-EEEECCTTCE
T ss_pred EEEEEcCCCceeEeeeecCCCc---------ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee-EEecCCCCce
Confidence 9999999987 4444433222 3999999999 99999999999999999998755432 2445666789
Q ss_pred EEEEEcCC------------CCCEEEEEeCCCeEEEEEccCCCCCC-ce-eecCCCCcEEEEEEcCC---CCEEEEeeCC
Q 013086 218 VGLHCNPI------------QPELLLSCGNDHFARIWDIRRLEAGS-SL-CDLPHKRVVNSAYFSPS---GSKILTTSQD 280 (449)
Q Consensus 218 ~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~d 280 (449)
.+++|+|. ++.+|++++.||.|++||+++..... .. ...+|...|.+++|+|+ +.+|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 99999994 58999999999999999998654321 11 22368999999999999 8999999999
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
|.|++||++++..... . ..............+.|+|+ |++++ +++.|+.|++|++..+..
T Consensus 231 g~i~iwd~~~~~~~~~-~--~~~~~~~~~~~v~~~~~s~~---------g~~l~---~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWK-K--TLLKEEKFPDVLWRASWSLS---------GNVLA---LSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SCEEEEEESSTTSCCE-E--EESSSSCCSSCEEEEEECSS---------SCCEE---EEESSSSEEEEEEEETTE
T ss_pred CEEEEEeCCCCCccce-e--eeeccccCCCcEEEEEEcCC---------CCEEE---EecCCCcEEEEeCCCCCc
Confidence 9999999987643110 0 11111111223357899998 66666 677899999999975443
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=292.57 Aligned_cols=323 Identities=11% Similarity=0.061 Sum_probs=220.9
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE----------EecccCCceeEEEEee
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV----------YGNIHSCIVNNIRFNP 127 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~----------~~~~h~~~v~~~~~~~ 127 (449)
|......++..+. |.+.|++++|+|++ .+|++|+.||.|++||+.+...... ...+|...|++++|+|
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 3333444556665 67899999999999 6899999999999999988765311 1256899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCC--CC-------CCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC
Q 013086 128 TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG--WH-------GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 198 (449)
Q Consensus 128 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 198 (449)
++...|++|+.||.| +||+++++....+..+... .. ...+...|.+++|+|++.+|++++.||.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 645789999999999 9999999888777644100 00 0011245999999999999999999999999999
Q ss_pred CCCCCccc--eE--Eee-----------cCCCceEEEEEcCC---C-CCEEEEEe-------------------------
Q 013086 199 RTNSRSGE--AI--LIH-----------RKGSKVVGLHCNPI---Q-PELLLSCG------------------------- 234 (449)
Q Consensus 199 ~~~~~~~~--~~--~~~-----------~~~~~v~~~~~~~~---~-~~~l~~~~------------------------- 234 (449)
++++.... +. ..+ .+...|.+++|++. + +.+|++|+
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 88654311 00 001 01225667777431 1 13444443
Q ss_pred ---------------------------------------------------CCCeEEEEEccCCCCCCc-----eee---
Q 013086 235 ---------------------------------------------------NDHFARIWDIRRLEAGSS-----LCD--- 255 (449)
Q Consensus 235 ---------------------------------------------------~dg~i~iwd~~~~~~~~~-----~~~--- 255 (449)
.||.|++||+.++..... ...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 344455555432211000 000
Q ss_pred -------------------------------cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec-
Q 013086 256 -------------------------------LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS- 303 (449)
Q Consensus 256 -------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~- 303 (449)
.+|...+.+++|+|++++|++|+.|++|++||+.++....+ ......
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~~l 479 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-ASFEVNL 479 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-BCEEEEH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC-ceEEeec
Confidence 02223334455678999999999999999999998854221 100000
Q ss_pred ---CCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce--------------------------
Q 013086 304 ---HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-------------------------- 354 (449)
Q Consensus 304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~-------------------------- 354 (449)
...........++|+|+ |++++ +|+.|++|+|||+.+++
T Consensus 480 ~~~~~~~h~~~V~svafspd---------g~~LA---sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 480 SRTLNKAKELAVDKISFAAE---------TLELA---VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp HHHTTCSSSCCEEEEEEETT---------TTEEE---EEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred hhhcCCCCCCceeEEEecCC---------CCeEE---EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 00011223458999999 88888 79999999999998762
Q ss_pred -------------------EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 355 -------------------LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 355 -------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
++..+.+|. ..|.++ +|+||| +||+|+ |+.|+|||+.++..+
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~-~~V~sv-afSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANK-GKTSAI-NNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCS-CSEEEE-EECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred cccccccccCCCCCCCccceeEEEEcCC-CcEEEE-EecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 356666665 789999 899999 999999 999999999887543
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.3e-33 Score=260.89 Aligned_cols=290 Identities=14% Similarity=0.194 Sum_probs=230.2
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
|......++..+.+|.+.|.+++|+ + .+|++|+.||.|++||+.++.....+ .+|...|.++.|+ ++.+++++
T Consensus 144 wd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~---~~~l~s~s 216 (445)
T 2ovr_B 144 WSAVTGKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH---EKRVVSGS 216 (445)
T ss_dssp EETTTCCEEEECCCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE---TTEEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec---CCEEEEEe
Confidence 4444566778899999999999998 3 47999999999999999999888777 6899999999996 56899999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 217 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 217 (449)
.||.|++||+.+++....+..+... +.++++ ++.++++++.||.|++||++++.... ....+...+
T Consensus 217 ~dg~i~~wd~~~~~~~~~~~~~~~~---------v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v 282 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLHVLMGHVAA---------VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQGHTNRV 282 (445)
T ss_dssp TTSEEEEEESSSCCEEEEEECCSSC---------EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EECCCSSCE
T ss_pred CCCEEEEEECCCCcEEEEEcCCccc---------EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---EecCCCCce
Confidence 9999999999999988877654433 888888 78899999999999999998876442 334556689
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
.+++| ++.++++++.|+.|++||+++.+.... ..+|...+.++.+ ++.+|++++.||.|++||+++++.....
T Consensus 283 ~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 283 YSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp EEEEE---CSSEEEEEETTSCEEEEETTTCCEEEE--ECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEE--EcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 99999 568999999999999999987544222 2368888888877 5679999999999999999887642211
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe----cCccceeceeeec
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM----DPNITTISPVNKL 373 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~v~~~ 373 (449)
. . ..........+.|+ +.+++ +|+.|+.|++||+.+++.+..+. ..+...+.++ +|
T Consensus 356 ~----~-~~~~~~~v~~~~~~-----------~~~l~---s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 415 (445)
T 2ovr_B 356 Q----G-PNKHQSAVTCLQFN-----------KNFVI---TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RA 415 (445)
T ss_dssp C----S-TTSCSSCEEEEEEC-----------SSEEE---EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE-EE
T ss_pred c----c-CCCCCCCEEEEEEC-----------CCEEE---EEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE-Ee
Confidence 0 0 00011112244453 44555 68899999999999999998883 2344778888 99
Q ss_pred CCCCcEEeecC-CCe----EEEEcCCC
Q 013086 374 HPRDDVLASGS-SRS----IFIWRPKE 395 (449)
Q Consensus 374 ~~~~~~l~s~s-dg~----i~iw~~~~ 395 (449)
+|++.+|++|+ ||. |.|||+..
T Consensus 416 s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999 897 99999874
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.9e-34 Score=277.57 Aligned_cols=301 Identities=15% Similarity=0.134 Sum_probs=235.7
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC----eeeEEEecccCCc-eeEEEEee--CCCCeEEEEeCCCeEE
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV----SEKIVYGNIHSCI-VNNIRFNP--TNDGTVYAASSDGTVS 143 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~----~~~~~~~~~h~~~-v~~~~~~~--~~~~~l~s~~~dg~v~ 143 (449)
.|.+.|.+++|+|++ ++|++++ ++.|+|||+.++ .....+ .+|... |++++|+| + +++|++++.||.|+
T Consensus 16 ~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTT-CCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCC-CCEEEEecCCCEEE
Confidence 588999999999999 6788887 789999999987 666666 789999 99999999 8 99999999999999
Q ss_pred EEeCCCC--------ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC----CeEEEEECCCCCCccceEEee
Q 013086 144 CTDLETG--------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 144 iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~ 211 (449)
+||+.++ +....+..+.. .+.+++|+|+++++++++.+ +.|++||.. . ......
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~---~~~~~~ 157 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAG---------PISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N---SLGEVS 157 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSS---------CEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C---EEEECC
T ss_pred EEeCCCCcccccccccccchhhcccc---------cEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C---cceeee
Confidence 9999755 44444443322 39999999999999999987 799999833 2 223445
Q ss_pred cCCCceEEEEEcCCCCC-EEEEEeCCCeEEEEEccCCCCCCceeecCCCC---cEEEEEEcCC-CCEEEEeeCCCcEEEE
Q 013086 212 RKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR---VVNSAYFSPS-GSKILTTSQDNRLRIW 286 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~vw 286 (449)
.+...|.+++|+| ++. ++++++.|+.|++||+.+.+.... ...|.. .|.+++|+|+ +++|++++.||.|++|
T Consensus 158 ~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 158 GHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp SCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred cCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 6667899999999 665 899999999999999876544222 225777 8999999999 9999999999999999
Q ss_pred eCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc---
Q 013086 287 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN--- 363 (449)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--- 363 (449)
|+.+++...... . ...........+.|+ + +.+++ +++.|+.|++||+.+++.+..+..+.
T Consensus 235 d~~~~~~~~~~~---~-~~~~~~~~v~~~~~~-~---------~~~l~---~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 235 DGKSGEFLKYIE---D-DQEPVQGGIFALSWL-D---------SQKFA---TVGADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp ETTTCCEEEECC---B-TTBCCCSCEEEEEES-S---------SSEEE---EEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred ECCCCCEeEEec---c-cccccCCceEEEEEc-C---------CCEEE---EEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 998876532110 0 000111223467777 4 56665 67889999999999999999888662
Q ss_pred cceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccceEEEE
Q 013086 364 ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 411 (449)
Q Consensus 364 ~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~~~~c 411 (449)
...+..+ .|. ++.+|++++ ||.|++|++.+++.+..+..|...+.+
T Consensus 298 ~~~~~~~-~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 298 GNQQVGV-VAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344 (615)
T ss_dssp GGCEEEE-EEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEE
T ss_pred cCceeEE-EeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEE
Confidence 2344555 454 888999988 999999999998888887777665443
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.4e-33 Score=263.12 Aligned_cols=298 Identities=15% Similarity=0.132 Sum_probs=220.9
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEEE
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAA 136 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~ 136 (449)
|.......+..+.+|.+.|++++|++++ +|++|+.||.|++||+.++.....+ .+|...|.+++|++. ++.+++++
T Consensus 147 wd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 147 YDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEE
T ss_pred EECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEE
Confidence 4444556778899999999999999987 7999999999999999999887777 689999999999963 26899999
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCC--------------CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCC
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGW--------------HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS 202 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 202 (449)
+.||+|++||+.++............. ....+...+.+ ++++++++++++.||.|++||+++++
T Consensus 224 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTE
T ss_pred cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999999999998876432211100000 00011112444 47889999999999999999999876
Q ss_pred CccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCc
Q 013086 203 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR 282 (449)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 282 (449)
... ....+...|.+++|+| ++.++++|+.||.|++||+++++.... ..+|...|.++.|+ +.+|++++.||.
T Consensus 302 ~~~---~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 302 CLY---ILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYT--LQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp EEE---EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred EEE---EecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEE--EeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 542 3445666899999999 999999999999999999987544222 23699999999997 689999999999
Q ss_pred EEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 283 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
|++||+.++.... ... .......+.|+|+ +.+++ +|+ |+.|++||+.+++.+..+...
T Consensus 374 v~vwd~~~~~~~~-----~~~----~~~~~~~~~~~~~---------~~~l~---~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 374 IRGWDANDYSRKF-----SYH----HTNLSAITTFYVS---------DNILV---SGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp EEEEETTTCCEEE-----EEE----CTTCCCEEEEEEC---------SSEEE---EEE-TTEEEEEETTTCCEEESCTTT
T ss_pred EEEEECCCCceee-----eec----CCCCccEEEEEeC---------CCEEE---Eec-CCeEEEEECCCCcEEehhhcc
Confidence 9999998754311 000 1111124566666 66666 455 899999999999999875555
Q ss_pred ccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 363 NITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 363 ~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
+...+..+ +|+ ...++++++ ||.+.+|-
T Consensus 432 ~~~~v~~v-~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 432 DADQIWSV-NFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCSEEEEE-EEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEE-Eec-CCEEEEEEEeCCeEEEEE
Confidence 56888888 786 344455555 77766654
No 76
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=252.63 Aligned_cols=255 Identities=13% Similarity=0.188 Sum_probs=182.8
Q ss_pred eee-ec-cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC-------eeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 67 AVI-RY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 67 ~~~-~~-h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
..+ .+ |.+.|.+++|+|++ .+|++|+.|++|+|||+... .....+ .+|...|.+++|+|+ +++|++|+
T Consensus 50 ~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~-g~~las~s 126 (330)
T 2hes_X 50 DVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSND-GYYLATCS 126 (330)
T ss_dssp EEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTT-SCEEEEEE
T ss_pred EEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCC-CCEEEEEe
Confidence 444 34 99999999999999 68999999999999998532 233333 789999999999999 99999999
Q ss_pred CCCeEEEEeCCCC----ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC
Q 013086 138 SDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 213 (449)
Q Consensus 138 ~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 213 (449)
.|++|++||+... +.+..+..+.. .|.+++|+|++.+|++++.|+.|++||....... .......|
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~---------~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~-~~~~~~~h 196 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQ---------DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWE-CVAVLNGH 196 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSS---------CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-EEEEECCC
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCC---------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCee-EEEEccCC
Confidence 9999999999532 33444433322 3999999999999999999999999998765211 12234556
Q ss_pred CCceEEEEEcCCC--CCEEEEEeCCCeEEEEEccCCCCC-----Cceeec--CCCCcEEEEEEcCCCCEEEEeeCCCcEE
Q 013086 214 GSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAG-----SSLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLR 284 (449)
Q Consensus 214 ~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 284 (449)
...|.+++|+| + +.+|++|+.|+.|++||++..... .....+ .|...|.+++|++++ +|++++.||.|+
T Consensus 197 ~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~ 274 (330)
T 2hes_X 197 EGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLA 274 (330)
T ss_dssp SSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEE
T ss_pred CCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEE
Confidence 67899999999 6 678999999999999999754221 112222 388999999999765 799999999999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccc--cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHL--TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+||+.+++.. .... ....+. ....+.|+|... +++++ +|+.|++|++||+.+
T Consensus 275 iw~~~~~~~~-----~~~~-~~~~h~~~~v~~v~~~~~~~-------~~~la---s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 275 VYEEVDGEWK-----VFAK-RALCHGVYEINVVKWLELNG-------KTILA---TGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTEEE-----EEEE-ESCTTTTSCEEEEEEC------------CCEE---EEETTSEEEEEEC--
T ss_pred EEEcCCCceE-----EEec-cccccccceEEEEEEecCCC-------ceEEE---EecCCCcEEEEEecc
Confidence 9998765310 0000 001111 234678888411 55565 789999999999864
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.3e-34 Score=263.40 Aligned_cols=289 Identities=14% Similarity=0.158 Sum_probs=219.3
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee---EEEecccCCceeEEEEee-CCCCeEEEEeCCCeEEEEeCCCC
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK---IVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSCTDLETG 150 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~ 150 (449)
....++++|+...++++++.||.|+||++...... .....+|...|++++|+| + +.+|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~-~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN-DNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC-TTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC-CCEEEEEeCCCeEEEEEccCC
Confidence 34468899987555566889999999999664321 222367999999999999 6 999999999999999999987
Q ss_pred -------ceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEe--ecCCCceEEE
Q 013086 151 -------LALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILI--HRKGSKVVGL 220 (449)
Q Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~ 220 (449)
+....+..+.. .|.+++|+|++ .+|++++.||.|++||+.+++... .. ..+...|.++
T Consensus 115 ~~~~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTK---------RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGPDVHPDTIYSV 182 (402)
T ss_dssp CCSSCBCSCSEEEECCSS---------CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE---EECTTTCCSCEEEE
T ss_pred CCccccCCceEEecCCCC---------eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE---EEecCCCCCceEEE
Confidence 34444544333 39999999998 699999999999999999875432 33 4566689999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCc-EEEEEEcCCCCEEEEe---eCCCcEEEEeCCCCCCCCC
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRV-VNSAYFSPSGSKILTT---SQDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~ 296 (449)
+|+| ++.+|++++.||.|++||+++.+....+. ..|... +.++.|+|++.+|+++ +.|+.|++||+++++...
T Consensus 183 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~- 259 (402)
T 2aq5_A 183 DWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL- 259 (402)
T ss_dssp EECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-
T ss_pred EECC-CCCEEEEEecCCcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-
Confidence 9999 99999999999999999998754432221 246554 8999999999999999 789999999998765411
Q ss_pred CccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE-EEEEecC-ccceeceeeecC
Q 013086 297 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL-VAEVMDP-NITTISPVNKLH 374 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~-~~~~v~~v~~~~ 374 (449)
. ............+.|+|+ +.+++. +|+.|+.|++||+.+++. +..+..+ +...+.++ +|+
T Consensus 260 -~----~~~~~~~~~v~~~~~s~~---------~~~l~~--~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~-~~s 322 (402)
T 2aq5_A 260 -S----LQELDTSSGVLLPFFDPD---------TNIVYL--CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM-GYM 322 (402)
T ss_dssp -E----EEECCCCSSCEEEEEETT---------TTEEEE--EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE-EEC
T ss_pred -e----EEeccCCCceeEEEEcCC---------CCEEEE--EEcCCCeEEEEEecCCCcceEeecccccCCcccce-EEe
Confidence 1 111112223457889998 554431 466799999999999874 4444433 34678888 899
Q ss_pred CCCcEEeecCCCeEEEEcCCCch
Q 013086 375 PRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 375 ~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
|++.++++ +++.+++|++.+++
T Consensus 323 p~~~~~~s-~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 323 PKRGLEVN-KCEIARFYKLHERK 344 (402)
T ss_dssp CGGGSCGG-GTEEEEEEEEETTE
T ss_pred ccccccee-cceeEEEEEcCCCc
Confidence 99998875 35799999998754
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=266.29 Aligned_cols=290 Identities=17% Similarity=0.208 Sum_probs=211.1
Q ss_pred EeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEee-CCCCeEEEEeCCCeEEEEeCCC---Cceee-e
Q 013086 81 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSCTDLET---GLALS-L 155 (449)
Q Consensus 81 ~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~---~~~~~-~ 155 (449)
|+|++ ..+++++ .|+. ++..+..+..+|...|++++|+| + +.+|++|+.||+|++||+.+ +.... .
T Consensus 35 f~~~~-~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPIQ-EIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCCC-CCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCcc-ccccccc------cccc-cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCccccee
Confidence 67777 4565554 3874 34555666578999999999999 7 99999999999999999876 43111 1
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC---CCCCccce-------EEeec--CCCceEEEE--
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR---TNSRSGEA-------ILIHR--KGSKVVGLH-- 221 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~-------~~~~~--~~~~v~~~~-- 221 (449)
.... +...|.+++|+|++.+|++++.||.|++||+. .++..... ..... +...+.++.
T Consensus 106 ~~~~--------h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 177 (437)
T 3gre_A 106 LTYD--------CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177 (437)
T ss_dssp EEEE--------CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE
T ss_pred eecc--------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE
Confidence 1111 12249999999999999999999999999995 33322110 01111 344566666
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
+++ ++.+|++|+.|+.|++||+++.+....+....|...|++++|+|++.+|++++.||.|++||+++++...
T Consensus 178 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~------ 250 (437)
T 3gre_A 178 VNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR------ 250 (437)
T ss_dssp ECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE------
T ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE------
Confidence 556 7899999999999999999875553333322278999999999999999999999999999998765422
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC-------------------
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------------- 362 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------------- 362 (449)
............+.|+|.-.. .+.+++ +|+.|+.|++||+.+++.+..+.++
T Consensus 251 -~~~~~~~~~v~~~~~~~~~s~-----~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 251 -SWSFGDHAPITHVEVCQFYGK-----NSVIVV---GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp -EEBCTTCEEEEEEEECTTTCT-----TEEEEE---EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred -EEecCCCCceEEEEeccccCC-----CccEEE---EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 111112223345655543110 055666 7899999999999999999988865
Q ss_pred ------ccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 363 ------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 363 ------~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+...+.++ +|+ ++++|++|+ ||.|++||+.+++.+..+.++
T Consensus 322 ~~~~~~~~~~v~~l-~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 322 NFCGIRSLNALSTI-SVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp CCCCCCSGGGGCCE-EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred eecccccCCceEEE-EEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 23345566 677 678999999 999999999999988877764
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=278.65 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=202.2
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC--CeeeEEEecccCCceeEEEEeeCC-CCeEEEEeCCCeE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTV 142 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v 142 (449)
+.++.+|.+.|++++|+|++ .+|++|+.||.|+|||+.+ ......+ .+|...|++++|+|+. +++|++|+.||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 35789999999999999999 5899999999999999984 3444444 7899999999998763 6799999999999
Q ss_pred EEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 143 SCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 143 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++||+.+++ ....+..+. ..|.+++|+|+ +..+++|+.||.|++||+++....... ....+...|.
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~---------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~ 149 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHS---------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVN 149 (753)
T ss_dssp EEEEEETTEEEEEEEECCCS---------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEE
T ss_pred EEEECCCCcccccccccCCC---------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceE
Confidence 999999886 334433332 23999999999 999999999999999999987544332 4456667899
Q ss_pred EEEEcCC------------CCCEEEEEeCCCeEEEEEccCCCCC-Ccee-ecCCCCcEEEEEEcCC---CCEEEEeeCCC
Q 013086 219 GLHCNPI------------QPELLLSCGNDHFARIWDIRRLEAG-SSLC-DLPHKRVVNSAYFSPS---GSKILTTSQDN 281 (449)
Q Consensus 219 ~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~dg 281 (449)
+++|+|. ++.++++|+.||.|++||+++.... .... ..+|...|++++|+|+ +.+|++++.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 9999994 4889999999999999999875432 1222 2378999999999999 89999999999
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
.|++||+.++..... .. + ... .
T Consensus 230 ~I~iwd~~~~~~~~~---------------------------------~~---------------~---------~~~-~ 251 (753)
T 3jro_A 230 TCIIWTQDNEQGPWK---------------------------------KT---------------L---------LKE-E 251 (753)
T ss_dssp CEEEEEESSSSSCCB---------------------------------CC---------------B---------SSS-S
T ss_pred EEEEecCCCCCCcce---------------------------------eE---------------E---------ecc-C
Confidence 999999976532100 00 0 000 1
Q ss_pred CccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 362 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 362 ~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
.+...+.++ +|+|++++|++|+ ||.|++|++.++.
T Consensus 252 ~~~~~v~~l-~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 252 KFPDVLWRA-SWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCSSCCCCE-EECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCceEEE-EEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 122456677 8999999999999 9999999998654
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-33 Score=251.53 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=186.4
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce--eeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEE
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVA 187 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~ 187 (449)
...+|...|++++|+|+ +++|++|+.|++|++||+.++.. +..+..+.. .|.+++|++ ++++|+++
T Consensus 8 ~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~---------~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG---------PVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp ------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS---------CEEEEEECCGGGSSCEEEE
T ss_pred ecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc---------cEEEEEeCCCCCCCEEEEE
Confidence 34689999999999999 99999999999999999988753 344544433 399999986 48999999
Q ss_pred cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC--CCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEE
Q 013086 188 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNS 264 (449)
Q Consensus 188 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~ 264 (449)
+.|+.|++||++++... .......+...|.+++|+| + +.+|++|+.|+.|++||++.......... .+|...|.+
T Consensus 78 s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp ETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred ECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99999999999876432 1223445667899999999 5 78999999999999999976432111112 268889999
Q ss_pred EEEcCC-----------------CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCce
Q 013086 265 AYFSPS-----------------GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESL 326 (449)
Q Consensus 265 ~~~~~~-----------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 326 (449)
++|+|+ +++|++++.|+.|++||++.+.... ....+..+. ....++|+|+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~------~~~~l~~h~~~V~~v~~sp~~~~~-- 227 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK------EEQKLEAHSDWVRDVAWAPSIGLP-- 227 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE------EEECCBCCSSCEEEEECCCCSSCS--
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc------eeeecccCCCceEEEEecCCCCCC--
Confidence 999997 4789999999999999996542100 011122222 23478999973110
Q ss_pred EEEcceecccCCCCCCcceEEEECCCc---e-EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCC
Q 013086 327 AVIGRYISENYNGAALHPIDFIDITTG---Q-LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~ 394 (449)
+.+++ +++.|++|++||+.+. . ....+..+. ..+.++ +|+|++++|++|+ ||.|+||+..
T Consensus 228 ---~~~la---s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~~v~~v-~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 228 ---TSTIA---SCSQDGRVFIWTCDDASSNTWSPKLLHKFN-DVVWHV-SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ---CCEEE---EEETTCEEEEEECSSTTCCCCBCCEEEECS-SCEEEE-EECTTTCCEEEEESSSCEEEEEEC
T ss_pred ---CceEE---EEcCCCeEEEEEccCccccchhhhhhhcCC-CcEEEE-EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 14445 6899999999998763 1 122333343 678888 9999999999999 9999999975
No 81
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.6e-32 Score=274.07 Aligned_cols=302 Identities=14% Similarity=0.185 Sum_probs=224.7
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
|.......+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.....+ .+|...|++++|+|+ +.+|++++
T Consensus 40 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~ 116 (814)
T 3mkq_A 40 WNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT-KPYVLSGS 116 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-SSEEEEEE
T ss_pred EECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC-CCEEEEEc
Confidence 3344455678899999999999999999 68999999999999999998888777 689999999999999 99999999
Q ss_pred CCCeEEEEeCCCC-ceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC
Q 013086 138 SDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 138 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
.||.|++||+.++ .....+..+.. .+.+++|+| ++..+++++.||.|++||+.+....... ...+..
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~~~~~ 185 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEH---------FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--TTGQER 185 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSS---------CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--ECCCTT
T ss_pred CCCEEEEEECCCCceEEEEEcCCCC---------cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--ecCCCC
Confidence 9999999999987 44555544332 399999999 8899999999999999999887654322 222335
Q ss_pred ceEEEEEcCC-CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 216 KVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 216 ~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
.+.+++|+|. ++.+|++++.||.|++||+++......+ .+|...|.+++|+|++.+|++++.||.|++||+.+++..
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 7999999973 6779999999999999999875442222 368899999999999999999999999999999887642
Q ss_pred CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe--------------
Q 013086 295 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-------------- 360 (449)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-------------- 360 (449)
... .. .......++|+|+.... +++ .+.++.+.+|++..+.....+.
T Consensus 264 ~~~----~~----~~~~v~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (814)
T 3mkq_A 264 KTL----NV----GLERSWCIATHPTGRKN-------YIA----SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA 324 (814)
T ss_dssp EEE----CC----SSSSEEEEEECTTCGGG-------EEE----EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSC
T ss_pred EEe----ec----CCCcEEEEEEccCCCce-------EEE----EEeCCCEEEEEcCCCCceeEECCCCCEEEECccccc
Confidence 211 00 11123467888873211 122 2234446666654322111110
Q ss_pred ----------------------------cCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 361 ----------------------------DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 361 ----------------------------~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
.++...+..+ +|+|+|++|++++|+.+.+|++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 325 ASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL-AHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp TTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE-EECTTSSEEEEEETTEEEEEETTT
T ss_pred ceeeeeeecccccccccCccceeeeecCCCCccCCcee-EECCCCCEEEEecCCEEEEEECcc
Confidence 1111234555 788888888887788888888653
No 82
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.9e-32 Score=246.04 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=201.8
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCCeEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~v~ 143 (449)
.+..+.+|.+.|++++|+|+| ++|++|+.++ ++||++.+....... +...+..+.+.++ ++.+ ++++.|++|+
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR-TNYVAFVTGVKEVVH 84 (355)
T ss_dssp --------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT-SSEEEEECSSTTEEE
T ss_pred CccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC-CCEEEEEECCccEEE
Confidence 345678899999999999999 6899988765 789998876655443 2235888899888 6665 5677789999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCC-CCccceEEeecCCCceEEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-SRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~ 222 (449)
+||+.+++.+..+.... .+.+++++++. ++++ .++.|++||+.+. +....... +...+++
T Consensus 85 iWd~~~~~~~~~~~~~~----------~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~ 145 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKVDA----------PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEF 145 (355)
T ss_dssp EEETTTTEEEEEEECSS----------CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEE
T ss_pred EEECCCCcEEEEEECCC----------ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEE
Confidence 99999999888776432 28999998764 3333 4789999999987 54443322 3344556
Q ss_pred cCCCCCEEEE--EeCCCeEEEEEccCCCCC-------------C-ceeecCCCCcEEEEEEcCCCCEEEEeeCCCc-EEE
Q 013086 223 NPIQPELLLS--CGNDHFARIWDIRRLEAG-------------S-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-LRI 285 (449)
Q Consensus 223 ~~~~~~~l~~--~~~dg~i~iwd~~~~~~~-------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v 285 (449)
++ .++++ |+.+|.|++||+++.... . .....+|...|++++|+|++++|++++.|++ |++
T Consensus 146 s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 146 SN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp ET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred Ec---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 65 55665 688999999999864310 0 2223479999999999999999999999998 999
Q ss_pred EeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE--EE-----
Q 013086 286 WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV--AE----- 358 (449)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~--~~----- 358 (449)
||+++++..... .. . ........++|+|+ |++++ +++.|++|++||+.++... ..
T Consensus 223 wd~~~~~~~~~~----~~-g-~h~~~v~~~~~s~~---------~~~l~---s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 223 FKTEDGVLVREF----RR-G-LDRADVVDMKWSTD---------GSKLA---VVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EETTTCCEEEEE----EC-T-TCCSCEEEEEECTT---------SCEEE---EEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EECCCCcEEEEE----Ec-C-CCCCcEEEEEECCC---------CCEEE---EEECCCEEEEEEccCCCCccccccccee
Confidence 999988753211 10 0 01123457899998 77777 7899999999999765311 11
Q ss_pred ---------------EecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchh
Q 013086 359 ---------------VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 398 (449)
Q Consensus 359 ---------------~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~ 398 (449)
+..........+ +|++++++|++++ ||.+++|++..++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKI-AWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEE-EESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eccccccccceeEEEeccCCCCCceEE-EEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 111111112334 8999999999999 99999999877654
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-32 Score=250.89 Aligned_cols=263 Identities=18% Similarity=0.243 Sum_probs=200.6
Q ss_pred ccccceeeec-cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC
Q 013086 62 DQVNCAVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 140 (449)
Q Consensus 62 ~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 140 (449)
.......+.. |...|++++|+|++ .+|++|+.||.|++||+.++.....+ .+|...|.+++|+ +.+|++++.||
T Consensus 122 ~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~~~~~dg 196 (401)
T 4aez_A 122 SGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN---RHVLSSGSRSG 196 (401)
T ss_dssp TCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred CCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC---CCEEEEEcCCC
Confidence 3344445554 89999999999999 68999999999999999998887777 6899999999995 66999999999
Q ss_pred eEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
.|++||++. +.....+..+.. .|.+++|+|++.+|++++.|+.|++||+++..... ....+...|.+
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~v~~ 264 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSS---------EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKA 264 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSS---------CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EECCCSSCCCE
T ss_pred CEEEEecccCcceeeEEcCCCC---------CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---EecCCcceEEE
Confidence 999999984 455555544433 39999999999999999999999999999865432 34456668999
Q ss_pred EEEcCCCCCEEEEEe--CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE--eeCCCcEEEEeCCCCCCCC
Q 013086 220 LHCNPIQPELLLSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT--TSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~ 295 (449)
++|+|....++++++ .|+.|++||+++.+. +..+.+...|.+++|+|++++|++ |+.||.|++||+.++....
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGAR---VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCE---EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCE---EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 999995556777765 799999999987443 444457788999999999999999 4489999999998754321
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
. ..... .......+.|+|+ |.+++ +++.|+.|++||+.+++.+......
T Consensus 342 ~----~~~~~--h~~~v~~~~~s~d---------g~~l~---s~~~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 342 Q----VDIPA--HDTRVLYSALSPD---------GRILS---TAASDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp E----EEEEC--CSSCCCEEEECTT---------SSEEE---EECTTSEEEEEECCC----------
T ss_pred E----EEecC--CCCCEEEEEECCC---------CCEEE---EEeCCCcEEEEECCCCccccccccc
Confidence 1 00011 1122347899998 77777 7889999999999999887665433
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.8e-32 Score=251.02 Aligned_cols=259 Identities=17% Similarity=0.250 Sum_probs=203.3
Q ss_pred cceeeeccCccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCC-------eeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
.+..+.+|.+.|++++|+| ++ .+|++|+.||.|+|||+.++ .....+ .+|...|.+++|+|++..+|+++
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEE
T ss_pred CCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEE
Confidence 3457889999999999999 66 79999999999999999887 344555 68999999999999933799999
Q ss_pred eCCCeEEEEeCCCCceeeee--ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 137 SSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
+.||.|++||+.+++....+ ..+.. .|.+++|+|++.+|++++.||.|++||++++....... ..+.
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~ 219 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHE 219 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEECTTTCCS---------CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSC
T ss_pred cCCCEEEEEECCCCCccEEEecCCCCC---------ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCC
Confidence 99999999999999888777 33322 39999999999999999999999999999876543211 2333
Q ss_pred C-ceEEEEEcCCCCCEEEEE---eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE-eeCCCcEEEEeCC
Q 013086 215 S-KVVGLHCNPIQPELLLSC---GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSI 289 (449)
Q Consensus 215 ~-~v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~ 289 (449)
. .+.+++|+| ++.+|++| +.|+.|++||+++...........+...+.+++|+|++++|++ ++.||.|++||+.
T Consensus 220 ~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 220 GTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp SSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 3 489999999 89999999 7899999999987665444444567888999999999999965 5579999999998
Q ss_pred CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE
Q 013086 290 FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
+++.. ......+. .......++|+|+ +.+++ +.++.+++|++.++...
T Consensus 299 ~~~~~---~~~l~~~~--~~~~v~~~~~sp~---------~~~~~-----s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 299 SEAPF---LHYLSMFS--SKESQRGMGYMPK---------RGLEV-----NKCEIARFYKLHERKCE 346 (402)
T ss_dssp SSTTC---EEEEEEEC--CSSCCSEEEECCG---------GGSCG-----GGTEEEEEEEEETTEEE
T ss_pred CCCcc---eEeecccc--cCCcccceEEecc---------cccce-----ecceeEEEEEcCCCcEE
Confidence 77631 01111111 1223347889998 66655 35668999999887643
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-32 Score=268.49 Aligned_cols=258 Identities=16% Similarity=0.195 Sum_probs=200.9
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
....+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.++.....+ .+|...|.+++|+|+ +.+|++++.|++|++
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLD-NRQIVSASRDRTIKL 498 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SSCEEEEETTSCEEE
T ss_pred ccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCC-CCEEEEEeCCCEEEE
Confidence 456789999999999999999 68999999999999999998887777 689999999999999 999999999999999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC--CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
||+........... . ..+...|.+++|+|++ ..+++++.|+.|++||+++.+... ....|...|.+++|
T Consensus 499 wd~~~~~~~~~~~~-~-----~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~---~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 499 WNTLGECKYTISEG-G-----EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS---TLAGHTGYVSTVAV 569 (694)
T ss_dssp ECTTSCEEEEECSS-T-----TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEE
T ss_pred EECCCCcceeeccC-C-----CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEEEE
Confidence 99865433322211 1 1122349999999986 689999999999999998866432 34556678999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcccee
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
+| ++.+|++|+.||.|++||+++.+. +..+.+...|.+++|+|++.+|++++ ++.|++||++++...........
T Consensus 570 sp-dg~~l~sg~~Dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~ 644 (694)
T 3dm0_A 570 SP-DGSLCASGGKDGVVLLWDLAEGKK---LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLK 644 (694)
T ss_dssp CT-TSSEEEEEETTSBCEEEETTTTEE---EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC
T ss_pred eC-CCCEEEEEeCCCeEEEEECCCCce---EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccc
Confidence 99 999999999999999999987443 44445667899999999998887765 56799999998765321110000
Q ss_pred -----------cCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 303 -----------SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 303 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
............+.|+|+ |++++ +|+.||.|+|||+.
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~l~~spd---------g~~l~---sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 645 AEAEKADNSGPAATKRKVIYCTSLNWSAD---------GSTLF---SGYTDGVIRVWGIG 692 (694)
T ss_dssp ----------------CCCCEEEEEECTT---------SSEEE---EEETTSEEEEEEC-
T ss_pred cccccccccccccCCceeEEeeeEEEcCC---------CCEEE---EEcCCCeEEEEecc
Confidence 000011112346789998 78887 89999999999985
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.5e-32 Score=250.95 Aligned_cols=271 Identities=18% Similarity=0.242 Sum_probs=204.3
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC----------CeeeEEEecccCCceeEEEEeeCCCC-eE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----------VSEKIVYGNIHSCIVNNIRFNPTNDG-TV 133 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~-~l 133 (449)
.+..+.+|.+.|++++|+|++..+|++++.||.|++|++.+ ......+ .+|...|.+++|+|+ +. +|
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~~~l 197 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPN-LNGYL 197 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTT-STTEE
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCC-CCCeE
Confidence 34567789999999999998547999999999999999986 3445555 689999999999999 55 99
Q ss_pred EEEeCCCeEEEEeCCCCcee-------eeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCcc
Q 013086 134 YAASSDGTVSCTDLETGLAL-------SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSG 205 (449)
Q Consensus 134 ~s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 205 (449)
++|+.||.|++|++.++... ..+..+ ...|.+++|+| ++.+|++++.+|.|++||+++.....
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGH---------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCC---------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCC---------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 99999999999999874321 122111 23499999999 67899999999999999999874322
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC-EEEEeeCCCcEE
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLR 284 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 284 (449)
.......+...|++++|+|....+|++|+.||.|++||+++.... ......|...|.+++|+|++. +|++++.|+.|+
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~-~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC-eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 333445666789999999943448999999999999999874321 222236899999999999885 799999999999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 364 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 364 (449)
+||+.......... ...++ ..+.+..+.+|.
T Consensus 348 iwd~~~~~~~~~~~----------------------------------------~~~~~--------~~~~~~~~~~h~- 378 (430)
T 2xyi_A 348 VWDLSKIGEEQSTE----------------------------------------DAEDG--------PPELLFIHGGHT- 378 (430)
T ss_dssp EEEGGGTTCCCCHH----------------------------------------HHHHC--------CTTEEEECCCCS-
T ss_pred EEeCCCCccccCcc----------------------------------------ccccC--------CcceEEEcCCCC-
Confidence 99996532210000 00000 123334444444
Q ss_pred ceeceeeecCCCCc-EEeecC-CCeEEEEcCCCch
Q 013086 365 TTISPVNKLHPRDD-VLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 365 ~~v~~v~~~~~~~~-~l~s~s-dg~i~iw~~~~~~ 397 (449)
..+..+ +|+|++. +|++++ ||.|+||++....
T Consensus 379 ~~v~~~-~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 379 AKISDF-SWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp SCEEEE-EECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCceEE-EECCCCCCEEEEEECCCCEEEeEccccc
Confidence 667888 8999999 888888 9999999987543
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-32 Score=253.09 Aligned_cols=293 Identities=13% Similarity=0.103 Sum_probs=214.1
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe---eeEEEe-------------------------------------
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYG------------------------------------- 113 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~---~~~~~~------------------------------------- 113 (449)
.+|.+++|+++| ++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 478999999999 566655 47899999998877 333331
Q ss_pred ----------------cccCCceeEEEEeeCCCCeE-EEEeCCCeEEEEeCC--CCceeeeeecCCCCCCCCCcccceeE
Q 013086 114 ----------------NIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRMLYG 174 (449)
Q Consensus 114 ----------------~~h~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (449)
.+|...|++++|+|+ +++| ++++.||.|++||+. +++....+..+.. ...+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~v~~ 154 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF-------SKRPNA 154 (450)
T ss_dssp -----------------CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC-------SSCEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccC-------CCCceE
Confidence 124447999999999 8885 899999999999999 7877777653111 123999
Q ss_pred EEEecCCCEEEEEcCCCeEEEEECCCCCCcc-ceEEeecCCCceEEEEEcCCC---CCEEEEEeCCCeEEEEEccCCCCC
Q 013086 175 MDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQ---PELLLSCGNDHFARIWDIRRLEAG 250 (449)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~ 250 (449)
++|+|++.+|++++.+|.|++|++.+..... .......+...|.+++|+| + +.+|++|+.|+.|++||+++....
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999999999999999999998876543 1112234556899999999 7 889999999999999999865432
Q ss_pred CceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce--ecC---------------CCCccccce
Q 013086 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV--HSH---------------DFNRHLTPF 313 (449)
Q Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~ 313 (449)
..+ ..+|...|.+++|+ ++++|++++.|+.|++||+.+++......... ... .........
T Consensus 234 ~~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 211 23799999999999 99999999999999999999887533211000 000 001112234
Q ss_pred eeeeccCCCCCceEEEcceecccCCCC-CCcceEEEEC--CCc---eEEEEEecCccceeceeeecCCCCcEEeecC-C-
Q 013086 314 RAEWDPKDPSESLAVIGRYISENYNGA-ALHPIDFIDI--TTG---QLVAEVMDPNITTISPVNKLHPRDDVLASGS-S- 385 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d- 385 (449)
.+.|+|+ +++++ +++ .++.|++|++ .++ +.+..+..+ ..+.++ +|+|++.++++++ +
T Consensus 312 ~i~~~~~---------~~~l~---~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~-~~~~~~~~v~~~~~~~ 376 (450)
T 2vdu_B 312 KIIKSKN---------LPFVA---FFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISL-SAHNDEFQVTLDNKES 376 (450)
T ss_dssp EEEECSS---------SSEEE---EEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEE-EEETTEEEEEECCTTC
T ss_pred EEEEeCC---------CCEEE---EEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEE-EecCCcEEEEEecccC
Confidence 6778886 56555 344 7899999999 665 677777766 567777 8999655555444 3
Q ss_pred -----CeEEEEcCC
Q 013086 386 -----RSIFIWRPK 394 (449)
Q Consensus 386 -----g~i~iw~~~ 394 (449)
..|.+|.+.
T Consensus 377 ~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 377 SGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSCCCSEEEEEEE
T ss_pred CCCCCcceEEEEEE
Confidence 347888654
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.7e-33 Score=252.25 Aligned_cols=257 Identities=12% Similarity=0.082 Sum_probs=198.7
Q ss_pred cCccEEEEEEeCCCC---cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 72 HSRRVTCLEFHPTNN---HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 72 h~~~V~~~~~~~~~~---~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
|...|++++|+|++. .+|++|+.||.|++||+.++.....+ .+|...|.+++|+|+++.+|++++.||.|++||++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 668899999999931 58999999999999999998887777 68999999999999339999999999999999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccce---------------------
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA--------------------- 207 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------- 207 (449)
+++....+.... .+...|.+++|+|++.+|++++.||.|++||+++.+.....
T Consensus 147 ~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 147 TDTLVAIFGGVE------GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp TTEEEEEECSTT------SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred cCeEEEEecccc------cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 998877763110 11124999999999999999999999999999876432111
Q ss_pred ----EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCC-----------Cceee-cCCCCcEEEEEEcCC-
Q 013086 208 ----ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG-----------SSLCD-LPHKRVVNSAYFSPS- 270 (449)
Q Consensus 208 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~~~v~~~~~~~~- 270 (449)
.....+...|.+++|+ +++|++++.|+.|++||+++.... ..+.. ..|...|.+++|+|+
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred cCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 1111256689999998 479999999999999999875431 11222 267888999999999
Q ss_pred -CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 271 -GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 271 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
+++|++++.||.|++||+.+++...........+. .......++|+|+ +++++ +++.|+.|++||
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~---------~~~l~---s~~~dg~i~iwd 363 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK--CGAAIRQTSFSRD---------SSILI---AVCDDASIWRWD 363 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT--CCSCEEEEEECTT---------SSEEE---EEETTSEEEEEE
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccc--cCCceEEEEeCCC---------CCeEE---EEeCCCEEEEEE
Confidence 99999999999999999998765321111111111 1233457899998 77777 789999999999
Q ss_pred CCC
Q 013086 350 ITT 352 (449)
Q Consensus 350 ~~~ 352 (449)
+.+
T Consensus 364 ~~~ 366 (366)
T 3k26_A 364 RLR 366 (366)
T ss_dssp C--
T ss_pred ecC
Confidence 853
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-33 Score=261.50 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=189.3
Q ss_pred cCccEEEEEEeCCC-C-------cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 72 HSRRVTCLEFHPTN-N-------HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 72 h~~~V~~~~~~~~~-~-------~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
+.+.|.+|+|+|++ . ++||+|+.++.. -..+|+ +..|++++.|++|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~-~~~laS~s~D~tI~ 186 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEH-LEMFDKEKHSSCIQ 186 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------CEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccchh-hhhhccCCCCceEE
Confidence 67899999999985 1 588888766420 013677 88999999999999
Q ss_pred EEeCCCCceee----eeecCCCCCCCCCcccceeEEEEecC------CCEEEEEcCCCeEEEEECCCCCCc--------c
Q 013086 144 CTDLETGLALS----LMNVNPNGWHGPRTWRMLYGMDINPE------KGVVLVADNFGFLYLVDARTNSRS--------G 205 (449)
Q Consensus 144 iwd~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~--------~ 205 (449)
|||+.+++... .+..+. ..|..++|+|+ +.+|++++.||.|++||+...... .
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~---------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSF---------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECC---------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred EEEccCCCCCceEEEEEEecC---------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 99998876432 222222 23999999997 579999999999999999876432 1
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEE--EEcCCC-CEEEEeeCCCc
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSA--YFSPSG-SKILTTSQDNR 282 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~ 282 (449)
.......+...|.+++|++ + ..|++|+.||+|++||+++.... .....+|...|.+| .|+|++ .+|++++.|++
T Consensus 258 p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp CSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred ceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 1123445667899999997 4 48999999999999999865332 12233799999999 578887 89999999999
Q ss_pred EEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 283 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
|+|||+++++..... ..+. .......++|+|+ ++.++ +++.|++|++||++++.++..+.+|
T Consensus 335 vklWD~~~~~~~~~~----~~~~--~~~~v~~v~fsp~---------~~~l~---s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 335 FYIFNPKDIATTKTT----VSRF--RGSNLVPVVYCPQ---------IYSYI---YSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp EEEECGGGHHHHCEE----EEEC--SCCSCCCEEEETT---------TTEEE---EECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EEEEECCCCCccccc----cccc--ccCcccceEeCCC---------cCeEE---EeCCCCcEEEEECcccccceeeecC
Confidence 999999876542211 1111 0011246889998 44444 5778899999999999988888876
Q ss_pred ccceeceeeecCCCCcEEeecC-CCeEEEEcCCCc
Q 013086 363 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 396 (449)
Q Consensus 363 ~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~ 396 (449)
. ..|.+| +|+|++++|++|+ ||+|++|++..+
T Consensus 397 ~-~~V~sv-a~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 397 E-TTITAI-GVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp S-SCEEEE-ECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred C-CceEEE-EeCCCCCeEEEEECCCEEEEEechHh
Confidence 6 788999 9999999999999 999999998764
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-33 Score=255.51 Aligned_cols=255 Identities=9% Similarity=0.113 Sum_probs=191.1
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
..+..+|++++|+|+ +++|++++.|+.|++||+.++ +....+..+.. .|.+++|+|++++|++++.|+
T Consensus 8 ~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK---------IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp EECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS---------CEEEEEECTTTCCEEEEETTS
T ss_pred ecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc---------eEEEEEEeCCCCEEEEEeCCC
Confidence 347789999999999 999999999999999999988 55555543332 399999999999999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-C-CCCcEEEEEEcC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-P-HKRVVNSAYFSP 269 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~ 269 (449)
.|++||+.++...........+...|.+++|+| ++.+|++++.|+.|++||+++.+.......+ . |...|.+++|+|
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999999998763333445556777999999999 9999999999999999999876532223333 4 899999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCC-----------ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCC
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSPS-----------REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
++++|++++.|+.|++||+.++...... ...... +........++|+|+ |++++ +
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~---------~~~l~---~ 222 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--YPSGGWVHAVGFSPS---------GNALA---Y 222 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--CCCSSSEEEEEECTT---------SSCEE---E
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc--ccCCceEEEEEECCC---------CCEEE---E
Confidence 9999999999999999999765432211 111111 122223457889998 66666 6
Q ss_pred CCCCcceEEEECCCceE----EEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 339 GAALHPIDFIDITTGQL----VAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 339 ~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
++.|+.|++||+.+++. +..+..|. ..+.++ +|+|++++|++|+++.+.+|+...
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQPPRALITVKLSQ-LPLRSL-LWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp EETTTEEC-CEECSTTSCEEECCCEECSS-SCEEEE-EEEETTEEEEEESSSSEEEECCCC
T ss_pred EeCCCcEEEEECCCCCCcceeeEeecCCC-CceEEE-EEcCCCCEEEEEcCCcEEEEEeCC
Confidence 88999999999999987 67777776 678888 899999999999955555777653
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=245.60 Aligned_cols=272 Identities=9% Similarity=0.005 Sum_probs=198.5
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC---------C
Q 013086 80 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET---------G 150 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~---------~ 150 (449)
.+.+++ .+|++|+.||.|++||+.++.....+. ...|.++.|+|. +++++.|++|++|+... +
T Consensus 43 ~~~~d~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDK-WVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEE-EEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCC-CEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 334556 689999999999999999988777663 467888888875 99999999999997663 3
Q ss_pred ceeeeeecCCCCCCCCCcccceeEEEEec--CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 151 LALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+.+...... +...|.+++|+| +++++++++.||.|++||+++++... .....+...+.+++|+| ++.
T Consensus 115 ~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~~i~~~~~~p-dg~ 183 (343)
T 3lrv_A 115 KVLREIEVD--------SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI--VHSAKSDVEYSSGVLHK-DSL 183 (343)
T ss_dssp CEEEEEECC--------CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE--EECCCSSCCCCEEEECT-TSC
T ss_pred ceeEEeecC--------CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE--EEecCCCCceEEEEECC-CCC
Confidence 333333211 112499999999 99999999999999999999876531 11123344699999999 999
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCceeecC-CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 229 LLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
+|++|+.||.|++||+++.+.... .... |...|++++|+|++.+|++++ |+.|++||+++++......... .+..
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~-~~~~- 259 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQASS-RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT-IPEF- 259 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSCCE-ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB-C----
T ss_pred EEEEEcCCCEEEEEECCCCCCCcc-EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc-cccc-
Confidence 999999999999999998655311 1223 899999999999999999999 5599999999876543221100 0000
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCC-CcceEEEECCCceEEEEEecCccceeceeeecCC---CCcEEeec
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP---RDDVLASG 383 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~l~s~ 383 (449)
......++|+|+ |++++ +++. ++.|++|++.++...... ..+..+ +|++ +...|+++
T Consensus 260 -~~~~~~~~~~~~---------g~~l~---~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 260 -KTGTVTYDIDDS---------GKNMI---AYSNESNSLTIYKFDKKTKNWTK-----DEESAL-CLQSDTADFTDMDVV 320 (343)
T ss_dssp ---CCEEEEECTT---------SSEEE---EEETTTTEEEEEEECTTTCSEEE-----EEEEEC-CC----CCCCEEEEE
T ss_pred -cccceEEEECCC---------CCEEE---EecCCCCcEEEEEEcccccceEe-----cCceeE-ecCccccccceeEEE
Confidence 010135899998 77777 5555 889999999766543333 334445 7888 88899998
Q ss_pred C-CCeEEEEcC
Q 013086 384 S-SRSIFIWRP 393 (449)
Q Consensus 384 s-dg~i~iw~~ 393 (449)
+ ||.+.++-.
T Consensus 321 ~~d~~~~~~~~ 331 (343)
T 3lrv_A 321 CGDGGIAAILK 331 (343)
T ss_dssp EETTEEEEEEE
T ss_pred ecCCceEEEEe
Confidence 8 999988853
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-32 Score=248.87 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=193.7
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
-...|.+++|+||| +++||++.|++|+ |......+ .+|...|.+++|+|+ + .++.+.+|+ ++
T Consensus 14 ~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPd-g-------~~~~~~~~~---~~ 75 (588)
T 2j04_A 14 FEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPL-E-------FENKLDFEL---AQ 75 (588)
T ss_dssp CSSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECC-C-------CCCTTTTSC---CC
T ss_pred hhccEEEEEECCCC-CEEEEEcCCceee--ccccccee----cCCCccEEEEEECCC-C-------CcceEEEEe---CC
Confidence 35789999999999 7999999999999 65444332 689999999999998 5 455555554 33
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC-----ceEEEEEcCCC
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-----KVVGLHCNPIQ 226 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 226 (449)
....+.... ...|.+++|+|+|..||+++.||.|++||... .+.... +.. .+.+++|+| +
T Consensus 76 ~~~~~~~~~--------~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSP-D 140 (588)
T 2j04_A 76 QNGLLNSQP--------VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNP-I 140 (588)
T ss_dssp SSCSSTTSC--------SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECS-S
T ss_pred CceEeecCC--------CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcC-C
Confidence 222222111 12499999999999999999999999999544 111222 322 499999999 9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCC----ceee-----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGS----SLCD-----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 297 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (449)
+++|++|+.||+|++||+..+.... .+.. .+|...|.+++|+|+| +++++.|+.|++||+..+......
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence 9999999999999999998754211 1222 3577899999999999 888899999999999876642101
Q ss_pred ccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeec--CC
Q 013086 298 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKL--HP 375 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~--~~ 375 (449)
..+...+ ......++|+ |++++ +++ +++|++||+.+++......+|. ..+..+ +| +|
T Consensus 219 ~tL~~~h----~~~V~svaFs-----------g~~LA---Sa~-~~tIkLWd~~~~~~~~~~~gh~-~~V~~v-a~~~s~ 277 (588)
T 2j04_A 219 RMIQNAS----RRKITDLKIV-----------DYKVV---LTC-PGYVHKIDLKNYSISSLKTGSL-ENFHII-PLNHEK 277 (588)
T ss_dssp EEEECCC----SSCCCCEEEE-----------TTEEE---EEC-SSEEEEEETTTTEEEEEECSCC-SCCCEE-EETTCS
T ss_pred eeecccc----cCcEEEEEEE-----------CCEEE---EEe-CCeEEEEECCCCeEEEEEcCCC-ceEEEE-EeeeCC
Confidence 1110011 1122355665 33343 233 5899999999888754444544 788888 89 99
Q ss_pred CCcEEeecC-CCeEEEEcCC
Q 013086 376 RDDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 376 ~~~~l~s~s-dg~i~iw~~~ 394 (449)
++..|++++ ||. ++|..+
T Consensus 278 d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS
T ss_pred CCCEEEEEcCCCC-EEEeec
Confidence 999999999 999 999874
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-31 Score=245.53 Aligned_cols=254 Identities=10% Similarity=0.100 Sum_probs=202.2
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc--eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 191 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 191 (449)
..|..+|++++|+|+ +++|++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++++|++++.||
T Consensus 5 ~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG---------QVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp ESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS---------CEEEEEEETTTTEEEEEETTS
T ss_pred cccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC---------cccEEEEeCCCCEEEEEcCCC
Confidence 458999999999999 9999999999999999999887 6666654433 399999999999999999999
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee--cCCCCcEEEEEEcC
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD--LPHKRVVNSAYFSP 269 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~ 269 (449)
.|++||+.+++... ......+...|.+++|+| ++.+|++++.|+.|++||++.......... .+|...|.+++|+|
T Consensus 75 ~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 75 NAYVWTLKGRTWKP-TLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp CEEEEEEETTEEEE-EEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred eEEEEECCCCeeee-eEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 99999998765332 223345666899999999 999999999999999999987543222222 36789999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCC-----------CccceecCCCCc-cccceeeeeccCCCCCceEEEcceecccC
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSP-----------SREIVHSHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENY 337 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (449)
++++|++++.||.|++||++....... ...... .+.. ......+.|+|+ +.+++
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---------~~~l~--- 218 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESSSSCGWVHGVCFSAN---------GSRVA--- 218 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSS---------SSEEE---
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE--ecCCCCCeEEEEEECCC---------CCEEE---
Confidence 999999999999999999864332110 011111 1111 122346888887 66666
Q ss_pred CCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 338 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
+++.|+.|++||+.+++.+..+..+. ..+.++ +|+|++.+|++|.|+.|++|++.+
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASET-LPLLAV-TFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSS-CCEEEE-EEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCceeEEEccCC-CCeEEE-EEecCCCEEEEEeCCeEEEEEccC
Confidence 68899999999999999999998776 677888 899999999998899999999987
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-32 Score=249.01 Aligned_cols=263 Identities=14% Similarity=0.090 Sum_probs=199.8
Q ss_pred eeEEEecccCCceeEEEEeeCCC-CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEE
Q 013086 108 EKIVYGNIHSCIVNNIRFNPTND-GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVL 185 (449)
Q Consensus 108 ~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 185 (449)
....+ .+|...|++++|+|+ + .+|++|+.||.|++||+.+++....+... .+...|.+++|+| ++.+|+
T Consensus 65 ~~~~~-~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 65 LHRTA-SPFDRRVTSLEWHPT-HPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-------GPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp EEEEE-CCCSSCEEEEEECSS-CTTEEEEEEBTSCEEEEETTSTTCEEEECCC-------STTCBEEEEEEETTEEEEEE
T ss_pred eEEec-cCCCCCEEEEEECCC-CCCEEEEEcCCCeEEEEeCCCcccceeeecC-------CcCCceeEEEeCCCCCCEEE
Confidence 33344 679999999999999 6 89999999999999999988877666431 1123499999999 789999
Q ss_pred EEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEE
Q 013086 186 VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSA 265 (449)
Q Consensus 186 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 265 (449)
+++.|+.|++||+.... .........+...|.+++|+| ++.+|++|+.|+.|++||++. + .......|...|.++
T Consensus 136 s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-~--~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDG-H--EIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTS-C--EEEEEECSSSCEEEE
T ss_pred EEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCC-C--EEEEeccCCCcEEEE
Confidence 99999999999998632 211111222335799999999 999999999999999999942 2 222233799999999
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc-CCCCCceEEEcceecccCCCCCCc
Q 013086 266 YFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 266 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
+|+|+++ +|++++.|+.|++||+++++......... ........+.|+| + |.+++ +++.|+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~---------~~~l~---~~~~d~ 273 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-----PHEKPVNAAYFNPTD---------STKLL---TTDQRN 273 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-----ECSSCEEEEEECTTT---------SCEEE---EEESSS
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-----cCCCceEEEEEcCCC---------CCEEE---EEcCCC
Confidence 9999999 99999999999999998754322111111 1122335789999 6 66666 688899
Q ss_pred ceEEEECCCceEEEEEecCcc----------------ceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhc
Q 013086 344 PIDFIDITTGQLVAEVMDPNI----------------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~----------------~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~ 404 (449)
.|++||+.+++.+..+..+.. ..+..+ +|+|++++ +|+ ||.|+|||+.+++.+..+..
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA-GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE-ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEE-EecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 999999999888777765431 112223 67788777 777 99999999999998877765
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.5e-32 Score=250.13 Aligned_cols=260 Identities=13% Similarity=0.106 Sum_probs=204.4
Q ss_pred EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc------eeeeeecCCCCCCCCCcccceeEEEEecC----C
Q 013086 112 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPE----K 181 (449)
Q Consensus 112 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~ 181 (449)
...+|...|++++|+| ++|++++.||.|++||+.+++ ....+..+.. .|.+++|+|+ +
T Consensus 11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS---------GLHHVDVLQAIERDA 78 (397)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT---------CEEEEEEEEEEETTT
T ss_pred hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC---------cEEEEEEecccccCC
Confidence 3478999999999987 599999999999999999887 5555554433 3999999999 9
Q ss_pred ---CEEEEEcCCCeEEEEECCCCCCccc--eEEeecC-----CCceEEEEEc----CCCCCE-EEEEeCCCeEEEEEccC
Q 013086 182 ---GVVLVADNFGFLYLVDARTNSRSGE--AILIHRK-----GSKVVGLHCN----PIQPEL-LLSCGNDHFARIWDIRR 246 (449)
Q Consensus 182 ---~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~ 246 (449)
.+|++++.||.|++||+.+...... ......+ ...|.+++|+ | ++.+ |++++.||.|++||+++
T Consensus 79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999988765211 1123333 3689999999 8 8899 99999999999999987
Q ss_pred ------CCCCC-----ceee-----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec-CCC-Cc
Q 013086 247 ------LEAGS-----SLCD-----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS-HDF-NR 308 (449)
Q Consensus 247 ------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~-~~ 308 (449)
..... .+.. ..|...|.+++|+|++ +|++++.||.|++||+++++..... .. ... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~h~~~ 232 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF----ESQHSMINN 232 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE----ECCC---CC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE----ecccccccc
Confidence 55444 3322 3478899999999999 9999999999999999876542111 10 000 00
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCC---cceEEEECCCceEEEEEec-------------Cccceeceeee
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL---HPIDFIDITTGQLVAEVMD-------------PNITTISPVNK 372 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~v~~ 372 (449)
......+.|+|+ +.+++ +++.| +.|++||+.+++.+..+.. |. ..+.++ +
T Consensus 233 ~~~i~~i~~~~~---------~~~l~---~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~ 298 (397)
T 1sq9_A 233 SNSIRSVKFSPQ---------GSLLA---IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS-SWVMSL-S 298 (397)
T ss_dssp CCCEEEEEECSS---------TTEEE---EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS-SCEEEE-E
T ss_pred CCccceEEECCC---------CCEEE---EEecCCCCceEEEEECCCCcccceeccCcccccccccccccC-CcEEEE-E
Confidence 223357889997 66666 67788 9999999999999999887 54 778888 8
Q ss_pred cCCCCcEEeecC-CCeEEEEcCCCchhhhhhh
Q 013086 373 LHPRDDVLASGS-SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 373 ~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~ 403 (449)
|+|++++|++++ ||.|++||+.+++.+..+.
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999999 9999999999998887777
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=248.35 Aligned_cols=257 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC--CCceeeeeecCCCCCCCCCcccceeEEEEecC--CCEEEEEcC
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADN 189 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 189 (449)
.+|...|++++|+|+ +++|++++.||.|++||+. +++....+..+.. .|.+++|+++ +.+|++++.
T Consensus 8 ~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 8 NAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG---------PVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp EECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS---------CEEEEEECCGGGCSEEEEEET
T ss_pred cCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCC---------cEEEEEeCCCCCCCEEEEecc
Confidence 679999999999999 9999999999999999998 4444445543332 3999999987 899999999
Q ss_pred CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC--CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE
Q 013086 190 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 267 (449)
Q Consensus 190 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 267 (449)
||.|++||+.++... .......+...|.+++|+| + +.+|++++.|+.|++||++............|...|.+++|
T Consensus 78 dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 78 DGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp TSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred CCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence 999999999986522 1223445666899999999 7 89999999999999999988655555555579999999999
Q ss_pred cC-------------CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEccee
Q 013086 268 SP-------------SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYI 333 (449)
Q Consensus 268 ~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ 333 (449)
+| ++.+|++++.|+.|++||++++..... ....+..+ .....++|+|+... +.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~------~~~l 224 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-----LESTLEGHSDWVRDVAWSPTVLL------RSYL 224 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE-----EEEEECCCSSCEEEEEECCCCSS------SEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee-----eEEEEecccCcEeEEEECCCCCC------CCeE
Confidence 99 699999999999999999987653110 11111112 22347889987311 2344
Q ss_pred cccCCCCCCcceEEEECCCce---EEEEEe-cCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 334 SENYNGAALHPIDFIDITTGQ---LVAEVM-DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 334 ~~~~~~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+ +++.|+.|++||+.++. ....+. ..+...+.++ +|+|++++|++++ ||.|++|++..+.
T Consensus 225 ~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 225 A---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA-SWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp E---EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE-EECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred E---EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE-EEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 4 67889999999998874 222222 1244677888 8999999999988 9999999988543
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-31 Score=233.95 Aligned_cols=262 Identities=17% Similarity=0.140 Sum_probs=204.8
Q ss_pred CcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC
Q 013086 103 FYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 182 (449)
Q Consensus 103 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 182 (449)
..+.........+|...|++++| |+ +.+|++++.||.|++||+.+++....+..+.. .+.+++|+|++.
T Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~ 72 (313)
T 3odt_A 4 PFTGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG---------FLNSVCYDSEKE 72 (313)
T ss_dssp -CCCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSS---------CEEEEEEETTTT
T ss_pred ccccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc---------cEEEEEECCCCC
Confidence 33443334444789999999999 88 89999999999999999999888777766543 399999999999
Q ss_pred EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcE
Q 013086 183 VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV 262 (449)
Q Consensus 183 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 262 (449)
++++++.||.|++|++..............+...|.+++|. ++++++++.||.|++||.. .. ......|...+
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~--~~--~~~~~~~~~~v 145 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG--SL--VYNLQAHNASV 145 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETT--EE--EEEEECCSSCE
T ss_pred EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCC--cE--EEecccCCCce
Confidence 99999999999999998765443344556677789999994 5799999999999999932 12 22223689999
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCC
Q 013086 263 NSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 341 (449)
Q Consensus 263 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (449)
.++.|+| ++.+|++++.||.|++||..... .............+.|+|+ +. ++ +++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~i~~~~~~~~---------~~-~~---~~~~ 203 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVI---------KTFSGIHNDVVRHLAVVDD---------GH-FI---SCSN 203 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTEEE---------EEECSSCSSCEEEEEEEET---------TE-EE---EEET
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEecCceE---------EEEeccCcccEEEEEEcCC---------Ce-EE---EccC
Confidence 9999999 99999999999999999943211 1111111222346788887 44 33 5788
Q ss_pred CcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 342 LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 342 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
++.|++||+.+++.+..+..|. ..+.++ +|+|++ .|++++ ||.|++||+.+++.+..+..+..
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~-~~i~~~-~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 267 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHE-SFVYCI-KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI 267 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCS-SCEEEE-EECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred CCeEEEEECCchhhhhhhhcCC-ceEEEE-EEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc
Confidence 9999999999999999998776 778888 899999 477777 99999999999988877766654
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-31 Score=240.56 Aligned_cols=259 Identities=10% Similarity=0.070 Sum_probs=205.3
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc---eeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEc
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVAD 188 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 188 (449)
..+|...|++++|+|+ +.+|++++.||.|++|++.++. .......+.. .|.+++|+|+++ +|++++
T Consensus 7 ~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---------PLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS---------CEEEEEEEESSSEEEEEEE
T ss_pred ccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC---------ceEEEEECCCCCcEEEEEc
Confidence 3579999999999999 9999999999999999998877 1222222222 399999999999 999999
Q ss_pred CCCeEEEEEC-CCCCCccceEEeec--CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC---------CCCCCceeec
Q 013086 189 NFGFLYLVDA-RTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR---------LEAGSSLCDL 256 (449)
Q Consensus 189 ~dg~i~i~d~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~ 256 (449)
.||.|++||+ .+... ..... +...|.+++|+| +.+|++++.|+.|++||+++ .+... .+
T Consensus 77 ~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~ 147 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN---NT 147 (342)
T ss_dssp TTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS---SS
T ss_pred CCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeee---EE
Confidence 9999999999 77643 24445 677899999998 78999999999999999986 44333 23
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCccceecCCCCccccceeeeecc-CCCCCceEEEcceec
Q 013086 257 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYIS 334 (449)
Q Consensus 257 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 334 (449)
.|...|.+++|+|++ |++++.|+.|++||+++ +.... .... . ........+.|+| + +.+++
T Consensus 148 ~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--~~~~--~--~~~~~i~~i~~~~~~---------~~~l~ 210 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--TIEE--S--GLKYQIRDVALLPKE---------QEGYA 210 (342)
T ss_dssp SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--EEEE--C--SCSSCEEEEEECSGG---------GCEEE
T ss_pred eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--eeee--c--CCCCceeEEEECCCC---------CCEEE
Confidence 488899999999887 99999999999999987 54311 1011 1 1112234788998 7 66666
Q ss_pred ccCCCCCCcceEEEECCCc------eEEEEEecCcc--------ceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 335 ENYNGAALHPIDFIDITTG------QLVAEVMDPNI--------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 335 ~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
+++.++.|++|++... +....+..+.. ..+.++ +|+|++++|++|+ ||.|++||+.+++.+
T Consensus 211 ---~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 211 ---CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI-EFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp ---EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ---EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE-EEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 6788999999999887 77778877642 377888 8999999999999 999999999999988
Q ss_pred hhhhcc-ceEEEE
Q 013086 400 VEQKEE-MKIIVC 411 (449)
Q Consensus 400 ~~~~~~-~~~~~c 411 (449)
..+..| ...+.+
T Consensus 287 ~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 287 KNFAKFNEDSVVK 299 (342)
T ss_dssp EECCCCSSSEEEE
T ss_pred hhhhcccCCCceE
Confidence 888887 555443
No 99
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=237.96 Aligned_cols=258 Identities=13% Similarity=0.167 Sum_probs=209.1
Q ss_pred ecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe
Q 013086 113 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 192 (449)
Q Consensus 113 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 192 (449)
..+|...|++++|+|+ +++|++++.||.|++||+.+++....+..+.. .|.+++|+|++++|++++.||.
T Consensus 28 l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTG---------TIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSS---------CEEEEEECTTSSEEEEEETTTE
T ss_pred EEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC---------cEEEEEEcCCCCEEEEEeCCCe
Confidence 3789999999999999 99999999999999999999998888765443 3999999999999999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-----CeEEEEEccCCCCCCcee---------ecCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-----HFARIWDIRRLEAGSSLC---------DLPH 258 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~---------~~~~ 258 (449)
|++||+.+++.... ..+...+.+++|+| ++.++++++.+ +.|++||+........+. ...+
T Consensus 98 i~iwd~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 98 IKLWDVSNGQCVAT----WKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEEEETTTCCEEEE----EECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EEEEECCCCcEEEE----eecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999998765432 22556899999999 99999999998 999999998765432221 1234
Q ss_pred CC--cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecc
Q 013086 259 KR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFG-NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 335 (449)
Q Consensus 259 ~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 335 (449)
.. .+.+++|+|++++|++++.||.|++||++++ .... .... .......+.|+|+ +.+++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~----~~~~v~~~~~~~~---------~~~l~- 234 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD----SIDL----HEKSISDMQFSPD---------LTYFI- 234 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE----EEEC----CSSCEEEEEECTT---------SSEEE-
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE----EEec----CCCceeEEEECCC---------CCEEE-
Confidence 44 8999999999999999999999999999873 2211 0111 1122347889997 66666
Q ss_pred cCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CC--------------eEEEEcCCCchhhh
Q 013086 336 NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR--------------SIFIWRPKEKSELV 400 (449)
Q Consensus 336 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg--------------~i~iw~~~~~~~~~ 400 (449)
+++.|+.|++||+.+++.+..+... ..+..+ +|+|+++++++++ ++ .+++|++.+++.+.
T Consensus 235 --~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 235 --TSSRDTNSFLVDVSTLQVLKKYETD--CPLNTA-VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp --EEETTSEEEEEETTTCCEEEEEECS--SCEEEE-EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred --EecCCceEEEEECCCCceeeeecCC--CCceeE-EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 6788999999999999999888733 566677 8999999999988 77 89999999998887
Q ss_pred hhhccceE
Q 013086 401 EQKEEMKI 408 (449)
Q Consensus 401 ~~~~~~~~ 408 (449)
.+..|...
T Consensus 310 ~~~~~~~~ 317 (369)
T 3zwl_B 310 RVQGHFGP 317 (369)
T ss_dssp EEECCSSC
T ss_pred heecccCc
Confidence 77766544
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-31 Score=248.79 Aligned_cols=260 Identities=14% Similarity=0.116 Sum_probs=190.7
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCe
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGF 192 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 192 (449)
.+|...|++|+|+|.++.+|++|+.||.|+|||+.++.....+... .+...|.+++|+| ++.+|++++.||.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-------gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-------GAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-------SSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-------CCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 4688999999999975789999999999999999887655444321 1123499999998 6889999999999
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
|++||+++.... .....+.....+.+++|+| ++.+|++|+.||.|++||++... .....+|...|.+++|+|++.
T Consensus 189 v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 189 TRLQDFKGNILR-VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EEEEETTSCEEE-EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCS
T ss_pred EEEeeccCCcee-EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCc
Confidence 999999864321 1112233344678999999 99999999999999999987422 222237999999999999875
Q ss_pred -EEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC
Q 013086 273 -KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 351 (449)
Q Consensus 273 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~ 351 (449)
+|++++.|+.|++||+++++....... .. ........++|+|+ |.+++ +++.|+.|+|||+.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~---~~--~h~~~v~~~~~spd---------g~~l~---s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLY---SL--PHRHPVNAACFSPD---------GARLL---TTDQKSEIRVYSAS 326 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSB---CC--BCSSCEEECCBCTT---------SSEEE---EEESSSCEEEEESS
T ss_pred eEEEEecCcceeeEEecccccccceEEE---ee--eccccccceeECCC---------CCeeE---EEcCCCEEEEEECC
Confidence 788999999999999988765332111 11 11122346889998 77777 78999999999999
Q ss_pred CceEEEEEecCccce-----eceeeecCCCCcEEeec-----------C--CCeEEEEcCCCchhhhhhh
Q 013086 352 TGQLVAEVMDPNITT-----ISPVNKLHPRDDVLASG-----------S--SRSIFIWRPKEKSELVEQK 403 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~-----v~~v~~~~~~~~~l~s~-----------s--dg~i~iw~~~~~~~~~~~~ 403 (449)
++.....+..+.... .... .|+|++.+++++ + ++.|++||..+++.+..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKA-AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBC-EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCccceEEecccccccccceeEEE-EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 998887776553211 1111 355555444433 3 3679999999998776654
No 101
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-30 Score=234.67 Aligned_cols=260 Identities=16% Similarity=0.207 Sum_probs=199.7
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.+...+.+|...|.+++|+|++ ++|++|+.|+.|++|+.......... ..+...+..+.++++ +.+|++++.|+.++
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~ 153 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSD-NRQIVSGSRDKTIK 153 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SSCEEEEETTSCEE
T ss_pred eeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeec-CccceeecCCCeEE
Confidence 4457889999999999999999 68999999999999999988777766 568888999999998 89999999999999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC--CEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+||+............ +...+..++|++++ .++++++.|+.|++||+++.+... ....+...|.+++
T Consensus 154 ~~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---~~~~h~~~v~~~~ 222 (340)
T 4aow_A 154 LWNTLGVCKYTVQDES--------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT---NHIGHTGYLNTVT 222 (340)
T ss_dssp EECTTSCEEEEECSSS--------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEE
T ss_pred EEEeCCCceEEEEecc--------ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee---EecCCCCcEEEEE
Confidence 9998766543322111 11238888888764 578899999999999999876542 3445666899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 301 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 301 (449)
|+| ++++|++|+.||.|++||+++... +..+.+...|.++.|+|++.++ +++.|+.|++||++++..........
T Consensus 223 ~s~-~~~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~ 297 (340)
T 4aow_A 223 VSP-DGSLCASGGKDGQAMLWDLNEGKH---LYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV 297 (340)
T ss_dssp ECT-TSSEEEEEETTCEEEEEETTTTEE---EEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-
T ss_pred ECC-CCCEEEEEeCCCeEEEEEeccCce---eeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccc
Confidence 999 999999999999999999986443 4444466789999999987655 56679999999998765432211111
Q ss_pred ecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 302 HSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 302 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
.......+ .....++|+|+ |++++ +|+.|+.|+|||+.+|+
T Consensus 298 ~~~~~~~h~~~v~~l~~s~d---------g~~l~---sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSAD---------GQTLF---AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ------CCCCCEEEEEECTT---------SSEEE---EEETTSCEEEEEEEC--
T ss_pred eeeeccCCCCCEEEEEECCC---------CCEEE---EEeCCCEEEEEeCCCcC
Confidence 11111122 22357889998 77777 78999999999999885
No 102
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-31 Score=243.74 Aligned_cols=272 Identities=12% Similarity=0.122 Sum_probs=198.2
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCC-eEEEEeCCCeEEEEeC----CCCc------eeeeeecCCCCC-
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGTVSCTDL----ETGL------ALSLMNVNPNGW- 163 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~----~~~~------~~~~~~~~~~~~- 163 (449)
..+.+|++......... ..|...|++++|+|+ +. +|++++.||.|++|++ .+++ ....+.......
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp ---------CCCEECEE-EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred cccccccchhhhhheee-eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 44567887665544443 457799999999999 77 9999999999999999 8887 344443321110
Q ss_pred CCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 164 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
....+...|.+++|+|++++|++++.+|.|++||. ++.. ......+...|.+++|+| ++.+|++++.|+.|++||
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL---LNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWN 177 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE---EEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe---eeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEE
Confidence 00012235999999999999999999999999993 3332 224455667899999999 999999999999999999
Q ss_pred ccCCCCCC-----------------------------------------------------ce-eecCCCCcEEEEEEcC
Q 013086 244 IRRLEAGS-----------------------------------------------------SL-CDLPHKRVVNSAYFSP 269 (449)
Q Consensus 244 ~~~~~~~~-----------------------------------------------------~~-~~~~~~~~v~~~~~~~ 269 (449)
+.+.+... .+ ....|...|.+++|+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 87543211 01 1125778899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 270 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
++++|++++.|+.|++||+++++..... . . .......+.|+|+ + +++ +++.|+.|++||
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~--~--~~~~i~~~~~~~~---------~-~l~---~~~~d~~i~i~d 316 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGNSQNCF----Y--G--HSQSIVSASWVGD---------D-KVI---SCSMDGSVRLWS 316 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBSCSEEE----C--C--CSSCEEEEEEETT---------T-EEE---EEETTSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCccceEe----c--C--CCccEEEEEECCC---------C-EEE---EEeCCCcEEEEE
Confidence 9999999999999999999877653211 0 0 1122347889987 4 333 578899999999
Q ss_pred CCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 350 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
+.+++.+..+..+. ..+..+ +|+|++++|++++ ||.|++|++.+++
T Consensus 317 ~~~~~~~~~~~~~~-~~i~~~-~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 317 LKQNTLLALSIVDG-VPIFAG-RISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTTTEEEEEEECTT-CCEEEE-EECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCCcEeEecccCC-ccEEEE-EEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999988776 677888 8999999999999 9999999999888
No 103
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.7e-30 Score=237.67 Aligned_cols=265 Identities=14% Similarity=0.194 Sum_probs=204.9
Q ss_pred CCCCccccceee--eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 58 HVIPDQVNCAVI--RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 58 ~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
|......+...+ .+|...|++|+|+|+| ++|++|+.||.|+|||+.+++.+..+ .+|...+.++.|+ +.+|++
T Consensus 130 Wd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~---~~~l~s 204 (420)
T 4gga_A 130 WSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---SYILSS 204 (420)
T ss_dssp EETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE---TTEEEE
T ss_pred EECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC---CCEEEE
Confidence 333334444444 4678899999999999 68999999999999999999888877 7899999998886 669999
Q ss_pred EeCCCeEEEEeCCCCce-eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc-eEEeecC
Q 013086 136 ASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE-AILIHRK 213 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 213 (449)
|+.|+.+++||...... +..+..+.. .+..+.+++++.++++++.|+.+++|+...++.... ......+
T Consensus 205 gs~d~~i~~~d~~~~~~~~~~~~~h~~---------~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~ 275 (420)
T 4gga_A 205 GSRSGHIHHHDVRVAEHHVATLSGHSQ---------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275 (420)
T ss_dssp EETTSEEEEEETTSSSCEEEEEECCSS---------CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC
T ss_pred EeCCCceeEeeecccceeeEEeccccc---------ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc
Confidence 99999999999886543 344443333 389999999999999999999999999988764332 2344556
Q ss_pred CCceEEEEEcCCCCCEEEEE--eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeCC
Q 013086 214 GSKVVGLHCNPIQPELLLSC--GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSI 289 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~ 289 (449)
...|.+++|+|.+..+++++ +.|+.|++||+.++.. ...+.+...+.++.|+|+++.|++++ .|+.|+|||+.
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~---~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE---EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc---ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 67899999999777777764 4799999999987544 33344567899999999999988765 68999999998
Q ss_pred CCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe
Q 013086 290 FGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 360 (449)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 360 (449)
+++.+.. +.+|. ....++|+|+ |++++ +|+.|++|+|||+.+........
T Consensus 353 ~~~~v~~---------l~gH~~~V~~l~~spd---------g~~l~---S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 353 TMAKVAE---------LKGHTSRVLSLTMSPD---------GATVA---SAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp TCCEEEE---------ECCCSSCEEEEEECTT---------SSCEE---EEETTTEEEEECCSCSSCC----
T ss_pred CCcEEEE---------EcCCCCCEEEEEEcCC---------CCEEE---EEecCCeEEEEECCCCCccchhh
Confidence 8765321 12222 2357899998 77777 78999999999998766554443
No 104
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-30 Score=227.79 Aligned_cols=213 Identities=17% Similarity=0.227 Sum_probs=170.2
Q ss_pred cceeeeccCccEEEEEEeCC--CCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCC-CCeEEEEeCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPT--NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSD 139 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~--~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d 139 (449)
++..|.+|.+.|++++|+++ + .+|++|+.|++|+|||+.++. ....+ .+|...|.+++|+|+. +.+|++++.|
T Consensus 45 ~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 45 LIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 45789999999999999864 6 689999999999999998764 33333 6799999999999963 6799999999
Q ss_pred CeEEEEeCCCCcee--eeeecCCCCCCCCCcccceeEEEEecC-------------CCEEEEEcCCCeEEEEECCCCCCc
Q 013086 140 GTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPE-------------KGVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 140 g~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
++|++||++++... ..+..+. ..+.+++|+|+ +++|++|+.|+.|++||+++....
T Consensus 123 ~~v~~wd~~~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~ 193 (297)
T 2pm7_B 123 GKVSVVEFKENGTTSPIIIDAHA---------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193 (297)
T ss_dssp SEEEEEEBCSSSCBCCEEEECCS---------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred CcEEEEEecCCCceeeeeeeccc---------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence 99999999876422 2222222 23999999997 579999999999999999876532
Q ss_pred cc-eEEeecCCCceEEEEEcCCC---CCEEEEEeCCCeEEEEEccCCCCCCceee---cCCCCcEEEEEEcCCCCEEEEe
Q 013086 205 GE-AILIHRKGSKVVGLHCNPIQ---PELLLSCGNDHFARIWDIRRLEAGSSLCD---LPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 205 ~~-~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
.. ......|...|.+++|+| + +.+|++++.|+.|++||++.......... ..|...|.+++|+|++++|+++
T Consensus 194 ~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 194 YVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 21 223445667899999999 6 48999999999999999976432111111 2578899999999999999999
Q ss_pred eCCCcEEEEeCC
Q 013086 278 SQDNRLRIWDSI 289 (449)
Q Consensus 278 ~~dg~i~vwd~~ 289 (449)
+.|+.|++|+..
T Consensus 273 ~~D~~v~lw~~~ 284 (297)
T 2pm7_B 273 GGDNKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCCcEEEEEEC
Confidence 999999999975
No 105
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=237.26 Aligned_cols=265 Identities=17% Similarity=0.199 Sum_probs=198.6
Q ss_pred eeccCccEEEEEEeCCC--CcEEEEEcCCCcEEEEeCcCCe-eeEEEecccCCceeEEEE------eeCCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRF------NPTNDGTVYAASSD 139 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~--~~~l~t~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~------~~~~~~~l~s~~~d 139 (449)
..+|...|++++|+|++ ..+|++|+.||.|++||+.+.. ....+ .+|...|.++.| +|+ +++|++++.|
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d 138 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEG-APEIVTGSRD 138 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-C-CCEEEEEETT
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCC-ccEEEEEeCC
Confidence 34799999999999983 2689999999999999999887 55555 689999999965 567 8899999999
Q ss_pred CeEEEEeCCCCc-eeeeeecCCCCCCCCCcccceeEEE----EecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 140 GTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMD----INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 140 g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
|.|++||+.++. ....+..+... ....+.+++ |++++.++++++.+|.|++||+++.+.. ....+.
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~ 209 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGE-----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR----WETNIK 209 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTS-----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE----EEEECS
T ss_pred CeEEEEeCCCCCCcceeccccCCC-----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee----eecCCC
Confidence 999999999886 55555433221 112377887 7889999999999999999999987642 334455
Q ss_pred CceEEEEEcCC--CCCEEEEEeCCCeEEEEEccCCCCCCceee---cCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEeC
Q 013086 215 SKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCD---LPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDS 288 (449)
Q Consensus 215 ~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~ 288 (449)
..+.+++|+|. ++.+|++++.||.|++||+++......+.. .+|...|++++|+|++. +|++++.||.|++||+
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 68999999985 678999999999999999988666544431 16899999999999998 8999999999999999
Q ss_pred CCCCCCCCCc----------cceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 289 IFGNLDSPSR----------EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 289 ~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
+++....... .......+..+ .....+.|+|+ |++++ ++++.|+.|++||+.+.+.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~--~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD---------KRGLC--VCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS---------STTEE--EEEETTSEEEEEEECC---
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC---------CCeEE--EEecCCCcEEEEECCCccc
Confidence 8765432110 00001111112 22347889998 54443 1478899999999987654
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=6e-30 Score=235.46 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=212.4
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
.++++++.|+.|++||+.+++....+ ..| ..+.+++|+|+ ++++ ++++.|+.|++||+.+++....+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----- 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS----- 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-----
Confidence 57899999999999999998887776 344 45899999999 7765 677789999999999999888776543
Q ss_pred CCcccceeEEEEecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE-EEEeCCCeEEEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL-LSCGNDHFARIWD 243 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd 243 (449)
.+.+++|+|+++++++ +..++.|++||+.+++... .......+.+++|+| +++.+ ++++.++.|++||
T Consensus 75 -----~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 75 -----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG----TVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp -----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred -----CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE----EEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEE
Confidence 2999999999998765 4567999999999876542 222334789999999 88766 7888899999999
Q ss_pred ccCCCCCCceeecCCCCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 244 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
+.+.+. +..+.....+.+++|+|++++| ++++.++.|++||+++++.... . .....+..+.|+|+
T Consensus 145 ~~~~~~---~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----~-----~~~~~~~~~~~~~~-- 210 (391)
T 1l0q_A 145 TVTKAV---INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT----V-----KVEAAPSGIAVNPE-- 210 (391)
T ss_dssp TTTTEE---EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----E-----ECSSEEEEEEECTT--
T ss_pred CCCCcE---EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE----E-----ecCCCccceEECCC--
Confidence 986544 3333334567999999999987 5677899999999987754211 1 11122346789988
Q ss_pred CCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEE-eecC-CCeEEEEcCCCchhhh
Q 013086 323 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL-ASGS-SRSIFIWRPKEKSELV 400 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l-~s~s-dg~i~iw~~~~~~~~~ 400 (449)
|+++........++.|++||+.+++.+..+..+. .+..+ +|+|++++| ++++ |+.|++||+.+++.+.
T Consensus 211 -------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 211 -------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGI-AVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp -------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEE-EECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--CccEE-EEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 5444411111268999999999999998887764 35566 899999877 5667 9999999999998777
Q ss_pred hhhccce
Q 013086 401 EQKEEMK 407 (449)
Q Consensus 401 ~~~~~~~ 407 (449)
.+..+..
T Consensus 281 ~~~~~~~ 287 (391)
T 1l0q_A 281 TMAVGKN 287 (391)
T ss_dssp EEECSSS
T ss_pred EEECCcC
Confidence 6655443
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=251.03 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=193.6
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc-----------eeeeeecCCCCC---CCCCcccceeEEEEecCC
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-----------ALSLMNVNPNGW---HGPRTWRMLYGMDINPEK 181 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~ 181 (449)
+...|++++|+|+ +++|++|+.||.|++||+.++. ....+..+...+ ........|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 6789999999999 9999999999999999999876 344454432000 000000249999999998
Q ss_pred --CEEEEEcCCCeEEEEECCCCCCcc-------------------------------------ceEEeecCCCceEEEEE
Q 013086 182 --GVVLVADNFGFLYLVDARTNSRSG-------------------------------------EAILIHRKGSKVVGLHC 222 (449)
Q Consensus 182 --~~l~~~~~dg~i~i~d~~~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~ 222 (449)
..|++++.|+.|++||+....... .......+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987633210 00112346678999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCc-e-----eecCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSS-L-----CDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
+| ++.+|++| .|+.|++||+++...... + ...+|...|.+++|+|++ .+|++++.||.|++||+++++...
T Consensus 186 ~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99 99999998 799999999984322111 1 122688999999999998 999999999999999999887522
Q ss_pred CCccceecCCC-------Ccc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC-ceEEEEEecCccce
Q 013086 296 PSREIVHSHDF-------NRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-GQLVAEVMDPNITT 366 (449)
Q Consensus 296 ~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 366 (449)
........+.. ..+ .....+.|+|+ |++++ +++. +.|++||+.+ ++.+..+..|....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------g~~l~---~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS---------GRYMM---TRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTT---------SSEEE---EEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCC---------CCEEE---EeeC-CeEEEEeCCCCccccceeecccccc
Confidence 11111111110 000 13457899997 77776 5666 9999999997 88888888774210
Q ss_pred --------------eceeeecCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 367 --------------ISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 367 --------------v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
+..+ +|+|++++|++|+ ||.|++||+.+++.+
T Consensus 331 ~~l~~~~~~~~i~~~~~~-~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFEC-CWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TTHHHHHHTSGGGCCCCE-EECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccceEE-EECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 1125 8999999999999 999999999988754
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=5.7e-30 Score=238.91 Aligned_cols=298 Identities=11% Similarity=0.050 Sum_probs=221.9
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE----ecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY----GNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
+..+..+. .+.+++|+|++ .++++++.++.|++||+.+++..... ..+|...|.+++|+++ +.++++++.|+.
T Consensus 116 ~~~~~~~~-~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~ 192 (433)
T 3bws_A 116 ISRFKTGF-QPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANA 192 (433)
T ss_dssp EEEEECSS-CBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTE
T ss_pred EEEEcCCC-CceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCE
Confidence 34455444 46699999965 78899999999999999988766532 2468889999999998 899999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
|++||+.+++....+..+.. .+.+++|+|+++.+++ +..++.|++||+++++.. ........+.++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGK---------WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----RKTDKIGLPRGL 259 (433)
T ss_dssp EEEEETTTCCEEEEEECSSS---------SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EECCCCSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCC---------CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----EEecCCCCceEE
Confidence 99999999888877764332 3899999999998855 558999999999876543 222234469999
Q ss_pred EEcCCCCCEEEEEe--------CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCC
Q 013086 221 HCNPIQPELLLSCG--------NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 221 ~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~ 291 (449)
+|+| ++.++++++ .|+.|++||+++.+. +....+...+.+++|+|+++.+ ++++.|+.|++||+.++
T Consensus 260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKL---IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcE---EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 9999 888888887 588999999986433 3333456688999999999755 56688999999999877
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcce---ecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY---ISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
+.... . .....+..++|+|+.....+...+.. ....++|+.||.|++||+.+++.+..+..+ ..+.
T Consensus 336 ~~~~~----~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~ 404 (433)
T 3bws_A 336 KVQKS----I-----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPT 404 (433)
T ss_dssp EEEEE----E-----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEE
T ss_pred cEEEE----e-----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCc
Confidence 64221 1 11122347889988321111111100 001125667899999999999999888764 4566
Q ss_pred eeeecCCCCcEEeec-C-CCeEEEEcCCC
Q 013086 369 PVNKLHPRDDVLASG-S-SRSIFIWRPKE 395 (449)
Q Consensus 369 ~v~~~~~~~~~l~s~-s-dg~i~iw~~~~ 395 (449)
.+ +|+|+|++|+++ + |+.|++|+++.
T Consensus 405 ~~-~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GL-DVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EE-EECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eE-EEcCCCCEEEEEECCCCeEEEEEecC
Confidence 77 899999998875 4 89999999863
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=4e-29 Score=229.97 Aligned_cols=295 Identities=12% Similarity=0.141 Sum_probs=218.2
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE-EEeCCC
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG 140 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg 140 (449)
....+..+.+|. .+.+++|+|++..++++++.|+.|++||+.+++....+. +...+.+++|+|+ +++|+ +++.++
T Consensus 21 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~spd-g~~l~~~~~~~~ 96 (391)
T 1l0q_A 21 SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGSSPQGVAVSPD-GKQVYVTNMASS 96 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT-SSEEEEEETTTT
T ss_pred CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CCCCccceEECCC-CCEEEEEECCCC
Confidence 334556677665 489999999996556888899999999999988877774 3448999999999 77665 555679
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
.|++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.... ......+.+
T Consensus 97 ~v~v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~ 162 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTVKTGK----------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT----VSVGRSPKG 162 (391)
T ss_dssp EEEEEETTTTEEEEEEECSS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----EECCSSEEE
T ss_pred EEEEEECCCCeEEEEEeCCC----------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE----EecCCCcce
Confidence 99999999998887765432 28999999999977 6788899999999988764421 222346899
Q ss_pred EEEcCCCCCEE-EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee---CCCcEEEEeCCCCCCCC
Q 013086 220 LHCNPIQPELL-LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS---QDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 220 ~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~ 295 (449)
++|+| +++.+ ++++.++.|++||+++.+. .....+...+.+++|+|++++|++++ .++.|++||+.+++...
T Consensus 163 ~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 163 IAVTP-DGTKVYVANFDSMSISVIDTVTNSV---IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEETTTTEE---EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEECCCCeE---EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence 99999 77766 6778899999999987443 33344667899999999999999888 68999999998775421
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcccee--------
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI-------- 367 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-------- 367 (449)
. . ..+..+..+.|+|+ |+++.. +++.++.|++||+.+++.+..+..+.....
T Consensus 239 ~----~-----~~~~~~~~~~~s~d---------g~~l~~--s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (391)
T 1l0q_A 239 R----I-----PVGPDPAGIAVTPD---------GKKVYV--ALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSI 298 (391)
T ss_dssp E----E-----ECCSSEEEEEECTT---------SSEEEE--EETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEEC
T ss_pred E----E-----ecCCCccEEEEccC---------CCEEEE--EcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecc
Confidence 1 1 11122457889998 554421 467889999999999999988875532110
Q ss_pred -----ceeeecCCCC----------cEEeecC-CCeEEEEcCCCchh
Q 013086 368 -----SPVNKLHPRD----------DVLASGS-SRSIFIWRPKEKSE 398 (449)
Q Consensus 368 -----~~v~~~~~~~----------~~l~s~s-dg~i~iw~~~~~~~ 398 (449)
..+..|+.+. ..+...+ |..+++|++.+|..
T Consensus 299 ~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 0111233221 3455566 88999999988763
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.1e-31 Score=242.77 Aligned_cols=266 Identities=12% Similarity=0.023 Sum_probs=177.8
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE----EecccCCceeEEEEee--------CCCCeEEEEeC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV----YGNIHSCIVNNIRFNP--------TNDGTVYAASS 138 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~----~~~~h~~~v~~~~~~~--------~~~~~l~s~~~ 138 (449)
.|...+....+.+++ .+|++|+.|++|+|||+.++..... ...+|.+.|++++|+| + +++|++++.
T Consensus 87 ~~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~ 164 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGD 164 (393)
T ss_dssp ----------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEET
T ss_pred ccCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEEC
Confidence 344444444445555 6899999999999999988765432 2368999999999998 5 789999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceE---------
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAI--------- 208 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 208 (449)
|++|+|||+.++.....+..+.. .+.+++|+|++. +|++++.|+.|++||+++++......
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~---------~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSS---------PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSS---------CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CCeEEEEECCCCceeeeecCCCC---------CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 99999999988877666554433 289999999875 89999999999999998865432211
Q ss_pred -------------EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 209 -------------LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 209 -------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
....+...+.++.|++.++..|++++.|+.+++||+........+. .|...+..+.+.|+.+.+.
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS--DSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEEC
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe--eecCccccEEEcccccccc
Confidence 1123345688888874499999999999999999998755543332 4666666777766644332
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 276 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
..... ....|.|... +.+++ +|+.|+.|++||+.+++.
T Consensus 314 ~~~~~--------------------------------~~~~~~~~~~-------~~~~~---sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 314 LFPSL--------------------------------LGACPHPRYM-------DYFAT---AHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp SSCCS--------------------------------SCCEECSSCT-------TEEEE---EETTTTEEEEEETTCTTC
T ss_pred ccCcc--------------------------------eeEEEccCCC-------CEEEE---EECCCCEEEEEECCCCcE
Confidence 11110 1233444321 33344 678999999999999998
Q ss_pred EEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcC
Q 013086 356 VAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRP 393 (449)
Q Consensus 356 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~ 393 (449)
+..+..++ ..|.++ +|+|||++||+++++.+.+|++
T Consensus 352 ~~~~~~~~-~~V~sv-afspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 352 NSIPIQLG-MPIVDF-CWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp CEEEEECS-SCEEEE-EECTTSSEEEEEESSEEEEEEE
T ss_pred EEEecCCC-CcEEEE-EEcCCCCEEEEEeCCCeEEEEE
Confidence 88887776 688888 9999999999999666767654
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=240.50 Aligned_cols=252 Identities=9% Similarity=0.056 Sum_probs=194.3
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC-----ceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-----IVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
+|...|.+++|||+| .+||+++.||.|+|||... ....+ . |.. .|.+++|+|+ +++|++|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEE
Confidence 568899999999999 6899999999999999655 44443 4 554 5999999999 9999999999999999
Q ss_pred eCCCCce-------eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe-ecCCCce
Q 013086 146 DLETGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKV 217 (449)
Q Consensus 146 d~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v 217 (449)
|+.++.. +..+..+..+ + ...|.+++|+|++ +++++.|+.|++||+............ ..+...|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~g---h--~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAG---S--KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTT---C--CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred ECCCCccccccceeeeeeeccccc---c--cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 9998753 3444333221 1 2359999999999 888899999999999887643111122 2444589
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEE--cCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF--SPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
.+++|+ ++.|++++ ++.|++||+.+... .....+|.+.|..++| +|++..|++++.||. ++|...
T Consensus 230 ~svaFs---g~~LASa~-~~tIkLWd~~~~~~--~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------ 296 (588)
T 2j04_A 230 TDLKIV---DYKVVLTC-PGYVHKIDLKNYSI--SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------ 296 (588)
T ss_dssp CCEEEE---TTEEEEEC-SSEEEEEETTTTEE--EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------
T ss_pred EEEEEE---CCEEEEEe-CCeEEEEECCCCeE--EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------
Confidence 999998 47888887 69999999975333 1223379999999999 999999999999999 999985
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
.+.++|+ +..++ +.|+++++|+...+. ...+.+ ...+.++ +|+|
T Consensus 297 ------------------~~~~spd---------~~l~a-----~~d~~v~lW~~~g~~-l~~~~~--~~~I~~v-a~SP 340 (588)
T 2j04_A 297 ------------------ELHVTAD---------NIIAP-----YLEKKFKKWSTIWNE-FNNYET--TLVIHGI-SLSP 340 (588)
T ss_dssp ------------------SEEEECC---------CSSHH-----HHHHHHHHTTTTTTS-SSSSCC--EEEEEEE-EECT
T ss_pred ------------------cEEECCC---------ceEEE-----EcCCEEEEEECCCCc-eeeecc--ceEEEEE-EECC
Confidence 1346776 55544 348999999985554 333333 3568888 9999
Q ss_pred CCcEEeecC
Q 013086 376 RDDVLASGS 384 (449)
Q Consensus 376 ~~~~l~s~s 384 (449)
||+.+|+++
T Consensus 341 dG~~lA~~~ 349 (588)
T 2j04_A 341 DGYSIAIVY 349 (588)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999987
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=233.87 Aligned_cols=287 Identities=16% Similarity=0.182 Sum_probs=191.5
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCC--CCeEEEEeCCCeEEEEeC
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~ 147 (449)
.+|...|.+++|+|++..+|++++.||.|++||+.++.....+. +...+.++.|+|.. +.++++++.||.|++||+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 46999999999999544789999999999999999988877774 88899999999862 449999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceE-------------EeecC
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAI-------------LIHRK 213 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~ 213 (449)
.+++....+..+.. .|.+++|+|++. ++++++.||.|++||++......... ....+
T Consensus 174 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 174 KSGSCSHILQGHRQ---------EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSSCCCEEECCCCS---------CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CCcceeeeecCCCC---------cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 99988777764433 399999999998 58899999999999998765322111 01345
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
...|.+++|+| ++.+|++++.||.|++||+++.+........ .....+........+..+++++.|+.|++||+.+
T Consensus 245 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 245 NGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred cCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 56899999999 9999999999999999999876553322211 1111222222233455677778899999999988
Q ss_pred CCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceece
Q 013086 291 GNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISP 369 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 369 (449)
++.... +..+ .....+.|+|+ +++++ +++.|+.|++||+.+++.+......... .
T Consensus 324 ~~~~~~---------~~~~~~~v~~~~~s~~---------~~~l~---s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~- 379 (408)
T 4a11_B 324 GEQITM---------LKGHYKTVDCCVFQSN---------FQELY---SGSRDCNILAWVPSLYEPVPDDDETTTK--S- 379 (408)
T ss_dssp CCEEEE---------ECCCSSCEEEEEEETT---------TTEEE---EEETTSCEEEEEECC-----------------
T ss_pred Ccceee---------eccCCCeEEEEEEcCC---------CCEEE---EECCCCeEEEEeCCCCCccCCCCceEec--c-
Confidence 765321 1111 22347889998 77776 7899999999999999887665443311 1
Q ss_pred eeecCCC-CcEEeecC-CCeEEEEcCC
Q 013086 370 VNKLHPR-DDVLASGS-SRSIFIWRPK 394 (449)
Q Consensus 370 v~~~~~~-~~~l~s~s-dg~i~iw~~~ 394 (449)
.+.+. ...+.+++ |+.+++|+..
T Consensus 380 --~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 380 --QLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------
T ss_pred --ccccccceeecccCccCceeecCCc
Confidence 23333 33344455 8999999865
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.9e-29 Score=229.07 Aligned_cols=205 Identities=12% Similarity=0.119 Sum_probs=164.1
Q ss_pred ccCccEEEEEEeCCCCcEEE--EEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 71 YHSRRVTCLEFHPTNNHILL--SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~--t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
.+...+.+++|+||| ++|+ +++.|++|+|||+.+......+. |...|.+++|+|+ ++++++++.+ .+.+|+..
T Consensus 131 ~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 131 NADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp CTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTT-SSEEEEECSS-CEEEEETT
T ss_pred CcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccC-CceEEeccce-eEEEEEec
Confidence 455679999999999 5554 55679999999999998887774 8889999999999 9999999855 56777777
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC----eEEEEECCCCCCcc-ceEEeecCCCceEEEEEc
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNSRSG-EAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~ 223 (449)
++......... .+...+.+++|+|++.++++++.++ .+++|++....... .......+...|++++|+
T Consensus 206 ~~~~~~~~~~~-------~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S 278 (365)
T 4h5i_A 206 TGSCIARKTDF-------DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD 278 (365)
T ss_dssp TCCEEEEECCC-------CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC
T ss_pred cCcceeeeecC-------CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC
Confidence 77665443221 1123489999999999999998776 68889987654321 122345666789999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceee-c-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-L-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
| ++++|++|+.|+.|+|||+++++. +.. + +|...|++++|+|||++|++++.|++|+|||+...
T Consensus 279 p-dg~~lasgs~D~~V~iwd~~~~~~---~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 279 M-KGELAVLASNDNSIALVKLKDLSM---SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp T-TSCEEEEEETTSCEEEEETTTTEE---EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred C-CCCceEEEcCCCEEEEEECCCCcE---EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9 999999999999999999987443 332 3 79999999999999999999999999999999643
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=229.51 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=198.9
Q ss_pred CcCCeeeEEEecccCCceeEEEEeeCC--CCeEEEEeCCCeEEEEeCCC-Ccee-eeeecCCCCCCCCCcccceeEEEEe
Q 013086 103 FYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLET-GLAL-SLMNVNPNGWHGPRTWRMLYGMDIN 178 (449)
Q Consensus 103 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 178 (449)
......... ..+|...|++++|+|+. +.+|++|+.||.|++||+.+ +... ..+..+.. .|.+++|+
T Consensus 26 ~~~~~~~~~-~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~---------~v~~~~~~ 95 (368)
T 3mmy_A 26 HNPMKDIEV-TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG---------PVLDVCWS 95 (368)
T ss_dssp SCTTCCEEC-SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS---------CEEEEEEC
T ss_pred CCCcceeEe-ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC---------CEEEEEEC
Confidence 333333333 37899999999999984 48999999999999999997 4444 44444433 39999999
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEE--cCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec
Q 013086 179 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL 256 (449)
Q Consensus 179 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 256 (449)
|++++|++++.||.|++||+.+.... ....+...|.+++| +| ++.+|++++.||.|++||+++.+....+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--- 167 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVL--- 167 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEE---
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEE---
Confidence 99999999999999999999987643 34456668999999 88 8889999999999999999876554333
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceeccc
Q 013086 257 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISEN 336 (449)
Q Consensus 257 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 336 (449)
.....+.++.+. ...+++++.++.+.+|+++...... .............+.+.+.+... ...++
T Consensus 168 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-- 232 (368)
T 3mmy_A 168 QLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEF----RRIESPLKHQHRCVAIFKDKQNK-------PTGFA-- 232 (368)
T ss_dssp ECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEE----EECCCSCSSCEEEEEEEECTTSC-------EEEEE--
T ss_pred ecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchh----hhccccccCCCceEEEcccCCCC-------CCeEE--
Confidence 234466667665 4588889999999999997643210 00001111111111222222110 01133
Q ss_pred CCCCCCcceEEEECCCc---eEEEEEecCccc-----------eeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhh
Q 013086 337 YNGAALHPIDFIDITTG---QLVAEVMDPNIT-----------TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 401 (449)
Q Consensus 337 ~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~-----------~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~ 401 (449)
+++.|+.|++||+... ..+..+..+... .+.++ +|+|++++|++|+ ||.|++||+.+++.+..
T Consensus 233 -~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 233 -LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI-AFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp -EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred -EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE-EEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 5789999999999887 556677766532 58888 8999999999999 99999999999998888
Q ss_pred hhccceEEE
Q 013086 402 QKEEMKIIV 410 (449)
Q Consensus 402 ~~~~~~~~~ 410 (449)
+..|...+.
T Consensus 311 ~~~~~~~v~ 319 (368)
T 3mmy_A 311 SEQLDQPIS 319 (368)
T ss_dssp CCCCSSCEE
T ss_pred ecCCCCCce
Confidence 887665443
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=7.7e-29 Score=214.23 Aligned_cols=285 Identities=14% Similarity=0.091 Sum_probs=174.2
Q ss_pred cEEEEEEeCCCC--cEEEEEcCCCcEEEEeCcCC---eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE-EEeC-
Q 013086 75 RVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS-CTDL- 147 (449)
Q Consensus 75 ~V~~~~~~~~~~--~~l~t~~~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~-iwd~- 147 (449)
.+.++.|-..+- -.+++++ ...|++|+..+. +..... .+|..+|..+.|.|+..+++.++-.+=.+. ++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 366676655441 1466666 468999999988 566666 789999999999997555555544321111 1111
Q ss_pred -CCC-ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--CCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 148 -ETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 148 -~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
... +......... + ....+..+ ++++++.++. .|+.|++|++............+.. .+..++|+
T Consensus 119 ~spd~~~~~~~l~s~----g--~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs 187 (356)
T 2w18_A 119 CSSDDESEKQVLLKS----G--NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFA 187 (356)
T ss_dssp C------CCEEEEEE----E--EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEE
T ss_pred ECCCccccccEEEeC----C--CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEee
Confidence 100 0000000000 0 00113332 4555555543 5899999999553322223344444 55566665
Q ss_pred C--CCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEE------------EEeeCCCcEEEEeC
Q 013086 224 P--IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKI------------LTTSQDNRLRIWDS 288 (449)
Q Consensus 224 ~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l------------~~~~~dg~i~vwd~ 288 (449)
| .++.+|++++.|++|+|||+++++....+..- .+...+.+++|+|+|.++ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 5 46789999999999999999886554444211 123467788999999886 56778999999999
Q ss_pred CCCCCCCCCccceecCCCCccccceeeeeccCCCCCce---EEEcceecccCCCCCCcceEEEECCCceEEEEEecCccc
Q 013086 289 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL---AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT 365 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 365 (449)
.+++..... .+.+ |+.....+ ...+.+++ +|+.|++|+|||+.+++++.++.+|...
T Consensus 268 ~tgk~l~v~----------------~~~~-p~Gh~~~~lsg~~sg~~lA---SgS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 268 KTTLSVGVM----------------LYCL-PPGQAGRFLEGDVKDHCAA---AILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp TTTEEEEEE----------------EECC-CTTCCCCEEEEEEETTEEE---EEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred CCCEEEEEE----------------Eeec-cCCCcceeEccccCCCEEE---EEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 887653200 0111 22111111 11134455 6889999999999999999999888744
Q ss_pred eeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 366 TISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 366 ~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
.+..+ +|+|||++|++|+ |++|+|||+
T Consensus 328 vvs~v-afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFV-KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEE-EECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEE-EECCCCCEEEEEECCCcEEEecC
Confidence 44456 8999999999999 999999985
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.3e-28 Score=215.80 Aligned_cols=260 Identities=14% Similarity=0.194 Sum_probs=200.3
Q ss_pred CCCCCccccceee--eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEE
Q 013086 57 AHVIPDQVNCAVI--RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY 134 (449)
Q Consensus 57 ~~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 134 (449)
.|......+++.+ .+|...|++++|+|++ ++|++|+.||.|++||+.+++....+ .+|...+.++.+. +..++
T Consensus 49 iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~---~~~l~ 123 (318)
T 4ggc_A 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---SYILS 123 (318)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE---TTEEE
T ss_pred EEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecC---CCEEE
Confidence 3444444455554 5788899999999999 68999999999999999999888877 6899888876655 67999
Q ss_pred EEeCCCeEEEEeCCCCcee-eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc-eEEeec
Q 013086 135 AASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE-AILIHR 212 (449)
Q Consensus 135 s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~ 212 (449)
+++.++.+++|+....... ..+..+.. .+..+.+.++++++++++.|+.|++||+++++.... ......
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQ---------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSS---------CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred EEecCCceEeeecCCCceeEEEEcCccC---------ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 9999999999998876443 33333322 389999999999999999999999999998764432 223445
Q ss_pred CCCceEEEEEcCCCCCEE--EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee--CCCcEEEEeC
Q 013086 213 KGSKVVGLHCNPIQPELL--LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDS 288 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~ 288 (449)
+...|.+++++|.....+ ++++.++.|++||...... .....+...+..+.|+|++..+++++ .|+.|++||+
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---cccccceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 566899999999555554 4566789999999876433 33345778899999999999887755 7999999999
Q ss_pred CCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 289 IFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
++++.+.. +.+|. ....++|+|+ |++++ +|+.|++|+|||+.+..
T Consensus 272 ~~~~~~~~---------l~gH~~~V~~l~~spd---------g~~l~---S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 272 PTMAKVAE---------LKGHTSRVLSLTMSPD---------GATVA---SAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEE---------ECCCSSCEEEEEECTT---------SSCEE---EEETTTEEEEECCSCCC
T ss_pred CCCcEEEE---------EcCCCCCEEEEEEcCC---------CCEEE---EEecCCeEEEEECCCCC
Confidence 98775321 12222 2357899998 77777 78999999999987643
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.3e-28 Score=229.78 Aligned_cols=261 Identities=16% Similarity=0.223 Sum_probs=189.5
Q ss_pred CCCCccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 58 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
+.......+..+.+|.+.|.+++| ++ .+|++|+.||.|++||+.++.....+ .+|...|.+++|+ +..+++|+
T Consensus 158 wd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~s 230 (435)
T 1p22_A 158 WDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN---NGMMVTCS 230 (435)
T ss_dssp EESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC---TTEEEEEE
T ss_pred EeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc---CCEEEEee
Confidence 344445667889999999999999 55 68999999999999999999888777 6899999999997 45999999
Q ss_pred CCCeEEEEeCCCCceee---eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC
Q 013086 138 SDGTVSCTDLETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
.||.|++||+.++.... .+..+. ..+.++++ +++++++|+.||.|++||+++++... ....+.
T Consensus 231 ~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~ 296 (435)
T 1p22_A 231 KDRSIAVWDMASPTDITLRRVLVGHR---------AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR---TLNGHK 296 (435)
T ss_dssp TTSCEEEEECSSSSCCEEEEEECCCS---------SCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE---EEECCS
T ss_pred CCCcEEEEeCCCCCCceeeeEecCCC---------CcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE---EEcCCC
Confidence 99999999999876553 222222 23888888 78999999999999999999876543 334556
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 215 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
..+.+++++ +.++++|+.||.|++||+++++.... ..+|...|.+++| ++.+|++|+.||.|++||+.++...
T Consensus 297 ~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 297 RGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp SCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred CcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEE--EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence 689999985 48999999999999999987544222 2368999999999 7889999999999999999765522
Q ss_pred CCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEE
Q 013086 295 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 359 (449)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 359 (449)
...........+..+ ......+...+.+++ +++.|+.|++||+.+.......
T Consensus 370 ~~~~~~~~~~~~~~h----------~~~v~~l~~~~~~l~---s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 370 RAPAGTLCLRTLVEH----------SGRVFRLQFDEFQIV---SSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp TSCTTTTEEEEECCC----------SSCCCCEEECSSCEE---ECCSSSEEEEEC----------
T ss_pred cccccchheeeccCC----------CCCeEEEEeCCCEEE---EEeCCCEEEEEECCCCCCcccC
Confidence 111000000011111 111222333366666 7899999999999887655443
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-28 Score=228.13 Aligned_cols=266 Identities=10% Similarity=0.011 Sum_probs=196.8
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc---eeeeeecCCCC-------------------------------
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNG------------------------------- 162 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~------------------------------- 162 (449)
..++.+++|+++ +++|+++ .++.|++||+.+++ .+..+..+...
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 357899999999 7766655 57899999999998 55554432110
Q ss_pred --------------CCCCCcccceeEEEEecCCCEE-EEEcCCCeEEEEECC--CCCCccceEEeecCCCceEEEEEcCC
Q 013086 163 --------------WHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDAR--TNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 163 --------------~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
...+.....|.+++|+|++++| ++++.||.|++||+. ++.... .+..+.+...|.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~sp- 159 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK-LRKRFCFSKRPNAISIAE- 159 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE-EEEEEECSSCEEEEEECT-
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee-eeecccCCCCceEEEEcC-
Confidence 0000122259999999999996 889999999999998 665443 333345666899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCC-ceee-cCCCCcEEEEEEcCC---CCEEEEeeCCCcEEEEeCCCCCCCCCCccc
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGS-SLCD-LPHKRVVNSAYFSPS---GSKILTTSQDNRLRIWDSIFGNLDSPSREI 300 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (449)
++.+|++|+.+|.|++|++.+..... .... .+|...|.+++|+|+ +++|++++.|+.|++||+.+++.... .
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~ 236 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---W 236 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE---E
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee---e
Confidence 99999999999999999998765543 1112 268899999999999 99999999999999999987764211 0
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCc-----------------
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN----------------- 363 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------- 363 (449)
. . ........++|+ + |.+++ +++.|+.|++||+.+++.+..+..++
T Consensus 237 ~--~--~h~~~v~~~~~s-d---------~~~l~---s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 237 L--F--GHKHFVSSICCG-K---------DYLLL---SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp C--C--CCSSCEEEEEEC-S---------TTEEE---EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred e--c--CCCCceEEEEEC-C---------CCEEE---EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 0 0 111223467787 5 66776 78899999999999999988886431
Q ss_pred -------cceeceeeecCCCCcEEeecC--CCeEEEEcC--CCc---hhhhhhhccce
Q 013086 364 -------ITTISPVNKLHPRDDVLASGS--SRSIFIWRP--KEK---SELVEQKEEMK 407 (449)
Q Consensus 364 -------~~~v~~v~~~~~~~~~l~s~s--dg~i~iw~~--~~~---~~~~~~~~~~~ 407 (449)
...+..+ +|+|++++|++++ |+.|+||++ .++ +.+..+..+..
T Consensus 300 ~~~~~~~~~~v~~i-~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~ 356 (450)
T 2vdu_B 300 NENNDIIEFAVSKI-IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN 356 (450)
T ss_dssp -----CBCCCEEEE-EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred ccccccceEEEEEE-EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence 1346666 8999999998875 799999999 555 45555555533
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=243.54 Aligned_cols=221 Identities=18% Similarity=0.224 Sum_probs=178.8
Q ss_pred cccceeeeccCccEEEEEEeCC--CCcEEEEEcCCCcEEEEeCcCCe--eeEEEecccCCceeEEEEeeCC-CCeEEEEe
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPT--NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAAS 137 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~--~~~~l~t~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 137 (449)
...+..+.+|.+.|++++|+++ + .+|++|+.||.|++||+.++. ..... .+|...|++++|+|+. +.++++|+
T Consensus 43 ~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 43 HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEe
Confidence 3456788999999999999987 7 689999999999999999876 34444 6799999999999974 67999999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-------------CCCEEEEEcCCCeEEEEECCCCCCc
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-------------EKGVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
.||.|++||+.++.......... +...+.+++|+| ++.++++|+.||.|++||+++....
T Consensus 121 ~dg~I~vwdl~~~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~ 193 (753)
T 3jro_A 121 SDGKVSVVEFKENGTTSPIIIDA-------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193 (753)
T ss_dssp TTSEEEEEECCSSSCCCCEEEEC-------CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE
T ss_pred CCCcEEEEEeecCCCcceeEeec-------CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc
Confidence 99999999998874333222211 112399999999 5899999999999999999887543
Q ss_pred cce-EEeecCCCceEEEEEcCCC---CCEEEEEeCCCeEEEEEccCCCCCC---ceeecCCCCcEEEEEEcCCCCEEEEe
Q 013086 205 GEA-ILIHRKGSKVVGLHCNPIQ---PELLLSCGNDHFARIWDIRRLEAGS---SLCDLPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 205 ~~~-~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
... .....+...|.+++|+| + +.+|++|+.||.|++||+++..... ......|...|++++|+|++.+|+++
T Consensus 194 ~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 194 YVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred ceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 222 23445667899999999 7 8999999999999999998754321 22222588899999999999999999
Q ss_pred eCCCcEEEEeCCCCCC
Q 013086 278 SQDNRLRIWDSIFGNL 293 (449)
Q Consensus 278 ~~dg~i~vwd~~~~~~ 293 (449)
+.||.|++|++.++..
T Consensus 273 s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 273 GGDNKVTLWKENLEGK 288 (753)
T ss_dssp CSSSCEECCBCCSSSC
T ss_pred cCCCEEEEEecCCCCC
Confidence 9999999999986543
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.8e-27 Score=221.35 Aligned_cols=217 Identities=16% Similarity=0.272 Sum_probs=174.8
Q ss_pred cccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-------eEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
...+..+.+|...|++++|+|++..+|++|+.||.|++|++..... ...+ .+|...|.+++|+|+++.+|++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s 249 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGS 249 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEE
Confidence 3456788999999999999999854899999999999999987322 2233 5799999999999955889999
Q ss_pred EeCCCeEEEEeCCCC---ceeeeeecCCCCCCCCCcccceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 136 ASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
++.||.|++||++++ +....+..+.. .+.+++|+|++. ++++|+.||.|++||++....... ...
T Consensus 250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~--~~~ 318 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTA---------EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH--SFE 318 (430)
T ss_dssp EETTSEEEEEETTCSCSSSCSEEEECCSS---------CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE--EEE
T ss_pred EeCCCeEEEEECCCCCCCcceeEeecCCC---------CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE--Eee
Confidence 999999999999987 34444443322 399999999987 688999999999999998554322 334
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC-----------CCceeec-CCCCcEEEEEEcCCCC-EEEEee
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-----------GSSLCDL-PHKRVVNSAYFSPSGS-KILTTS 278 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~ 278 (449)
.+...|.+++|+|....+|++++.|+.|++||+..... ...+... +|...|.+++|+|++. +|++++
T Consensus 319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 45668999999994346899999999999999986332 1233333 6888999999999999 899999
Q ss_pred CCCcEEEEeCCCC
Q 013086 279 QDNRLRIWDSIFG 291 (449)
Q Consensus 279 ~dg~i~vwd~~~~ 291 (449)
.||.|++|++...
T Consensus 399 ~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 399 EDNIMQVWQMAEN 411 (430)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCCEEEeEcccc
Confidence 9999999999654
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.3e-27 Score=216.01 Aligned_cols=226 Identities=14% Similarity=0.182 Sum_probs=177.6
Q ss_pred ccceeeeccCccEEEEEEeC--CCCcEEEEEcCCCcEEEEeCcCC---------eeeEEEecccCCceeEEEEeeCC-CC
Q 013086 64 VNCAVIRYHSRRVTCLEFHP--TNNHILLSGDKKGQVGVWDFYKV---------SEKIVYGNIHSCIVNNIRFNPTN-DG 131 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~--~~~~~l~t~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~-~~ 131 (449)
.....+.+|...|++++|+| ++ .+|++|+.||.|++||+.++ .....+ ..|...|.+++|+|+. +.
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGL 125 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCS
T ss_pred eecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCc
Confidence 34577889999999999999 46 68999999999999999876 334444 6799999999999974 67
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecC----CCCCCCCCcccceeEEEEecC---CCEEEEEcCCCeEEEEECCCCCCc
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVN----PNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRS 204 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~ 204 (449)
+|++++.||.|++||+++++....+... ............+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 126 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205 (351)
T ss_dssp EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE
T ss_pred EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee
Confidence 8999999999999999988765443321 011111223345999999997 899999999999988887765532
Q ss_pred cceEEeecCCCceEEEEEcCCCC----CEEEEEeCCCeEEEEEccCCCCC------------------------------
Q 013086 205 GEAILIHRKGSKVVGLHCNPIQP----ELLLSCGNDHFARIWDIRRLEAG------------------------------ 250 (449)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~------------------------------ 250 (449)
.......+...|.+++|+| ++ .+|++|+.||.|++||++.....
T Consensus 206 -~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
T 3f3f_A 206 -VAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSN 283 (351)
T ss_dssp -EEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------
T ss_pred -eeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccc
Confidence 2234445667899999999 76 79999999999999999864210
Q ss_pred -------------Cceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 251 -------------SSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 251 -------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..+.. .+|...|++++|+|++++|++++.||.|++||+.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 284 TEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 12222 26889999999999999999999999999999987654
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.8e-27 Score=213.26 Aligned_cols=256 Identities=10% Similarity=0.055 Sum_probs=174.9
Q ss_pred EEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec
Q 013086 100 VWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP 179 (449)
Q Consensus 100 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 179 (449)
||++.+...+... ..|...|++++|+|+ +++|++|+.++ +++|++.+++........ .+..+++.+
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~~~~-----------~~~~~~~~~ 68 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQEMR-----------HLSKVRMLH 68 (355)
T ss_dssp -----------------CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEEECS-----------CCCEEEECT
T ss_pred cccccccCCcccc-ccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeeeecC-----------CeEEEEEcC
Confidence 4555554444433 679999999999999 89999988765 789999887665544322 167788888
Q ss_pred CCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCC-CCCCceeecC
Q 013086 180 EKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EAGSSLCDLP 257 (449)
Q Consensus 180 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 257 (449)
+++.+ ++++.++.|++||+.+++..... .+...|.++++++ ..++++. ++.|++||+.+. +....+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~----~~~~~v~~v~~~~---~~~~~~~-~~~i~i~d~~~~~~~~~~~~~-- 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRI----KVDAPVKDLFLSR---EFIVVSY-GDVISVFKFGNPWKRITDDIR-- 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEEE----ECSSCEEEEEECS---SEEEEEE-TTEEEEEESSTTCCBSSCCEE--
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEEE----ECCCceEEEEEcC---CEEEEEE-cCEEEEEECCCCceeeEEecc--
Confidence 88877 55778899999999987655322 2445899999987 3455544 789999999875 33333322
Q ss_pred CCCcEEEEEEcCCCCEEEE--eeCCCcEEEEeCCCCCCCCCCccc------ee-cCCCCccc-cceeeeeccCCCCCceE
Q 013086 258 HKRVVNSAYFSPSGSKILT--TSQDNRLRIWDSIFGNLDSPSREI------VH-SHDFNRHL-TPFRAEWDPKDPSESLA 327 (449)
Q Consensus 258 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~------~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 327 (449)
+...+++++ .++++ |+.||.|++||+.++......... .. ...+..|. ....++|+|+
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------- 206 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------- 206 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-------
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-------
Confidence 455567777 56666 578999999999876521100000 00 11122222 2347899998
Q ss_pred EEcceecccCCCCCCcc-eEEEECCCceEEEEEe-cCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCch
Q 013086 328 VIGRYISENYNGAALHP-IDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 397 (449)
Q Consensus 328 ~~g~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~ 397 (449)
|++++ +|+.|++ |++||+.+++.+..+. +.+...+.++ +|+|++++|++++ |+.|+||++..+.
T Consensus 207 --g~~l~---s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~-~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 207 --SDMVA---TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM-KWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp --SSEEE---EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE-EECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred --CCEEE---EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE-EECCCCCEEEEEECCCEEEEEEccCCC
Confidence 77777 7999998 9999999999999998 4355888888 9999999999999 9999999997653
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.9e-27 Score=203.61 Aligned_cols=211 Identities=14% Similarity=0.111 Sum_probs=148.4
Q ss_pred cccceeeeccCccEEEEEEeCC----CCcEEEEEc--------------------CCCcEEEEeCcC-CeeeEEEecccC
Q 013086 63 QVNCAVIRYHSRRVTCLEFHPT----NNHILLSGD--------------------KKGQVGVWDFYK-VSEKIVYGNIHS 117 (449)
Q Consensus 63 ~~~~~~~~~h~~~V~~~~~~~~----~~~~l~t~~--------------------~d~~i~vwd~~~-~~~~~~~~~~h~ 117 (449)
-.|+..=+-|...|.+++|+|+ + +++++++ .|+.|++|++.. ++.+..+ .+|.
T Consensus 101 ~~~~~~~~~~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~ 178 (356)
T 2w18_A 101 LVCVALGNLEIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMP 178 (356)
T ss_dssp CEEEEECSSSEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECC
T ss_pred eeeeeeccccccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCC
Confidence 3344444556677888888888 6 4566544 388888888844 5555544 5788
Q ss_pred CceeEEEEee---CCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEE----------
Q 013086 118 CIVNNIRFNP---TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV---------- 184 (449)
Q Consensus 118 ~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---------- 184 (449)
..++.++|++ + +.+|++++.|++|+|||+.+++.+..+..+... ...+.+++|+|++.++
T Consensus 179 ~~v~~l~fs~~~g~-~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 179 PEETILTFAEVQGM-QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp CSSCEEEEEEEETS-TTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEEEETTEEEEEEC------
T ss_pred CceeeEEeeccCCC-CceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eeeeEEEEECCCCCEEEEeccCCCcc
Confidence 8888889988 4 789999999999999999999999988643221 1237888999999876
Q ss_pred --EEEcCCCeEEEEECCCCCCccceEE--eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCC
Q 013086 185 --LVADNFGFLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK 259 (449)
Q Consensus 185 --~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 259 (449)
++|+.|++|++||..+++....... ...+...+.+..+ ++.++++++.|++|+|||+.+++. +..+ +|.
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~---l~tL~gH~ 325 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQC---TALLPPVS 325 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSE---EEEECCC-
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcE---EEEecCCC
Confidence 5577899999999998765432111 0122223333333 367899999999999999987544 3344 566
Q ss_pred CcEE-EEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 260 RVVN-SAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 260 ~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
..+. +++|+|+|++|++|+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 6554 6899999999999999999999996
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=213.74 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=157.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCc---------CCeeeEEEecccCCceeEEEEee--CCCCeEEEEeCCCe
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY---------KVSEKIVYGNIHSCIVNNIRFNP--TNDGTVYAASSDGT 141 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~---------~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~ 141 (449)
...|.++.|+|+ +++++.|++|++|+.. +.........+|...|.+++|+| + +++|++++.||+
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~ 150 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGT 150 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCC
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCc
Confidence 356777777775 8899999999999765 44434445456778999999999 8 999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec-CCCceEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR-KGSKVVGL 220 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~ 220 (449)
|++||+++++.......+.. ..+.+++|+|++.+|++|+.||.|++||++++..... .... |...|.++
T Consensus 151 i~~wd~~~~~~~~~~~~~~~--------~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~--~~~~~h~~~v~~l 220 (343)
T 3lrv_A 151 IGFQSYEDDSQYIVHSAKSD--------VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS--RFPVDEEAKIKEV 220 (343)
T ss_dssp EEEEESSSSCEEEEECCCSS--------CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE--ECCCCTTSCEEEE
T ss_pred EEEEECCCCcEEEEEecCCC--------CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc--EEeccCCCCEEEE
Confidence 99999999888655432211 2389999999999999999999999999999876522 2233 56799999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcE--EEEEEcCCCCEEEEeeC-CCcEEEEeCCCCC
Q 013086 221 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVV--NSAYFSPSGSKILTTSQ-DNRLRIWDSIFGN 292 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~ 292 (449)
+|+| ++.+|++++ ++.|++||+++......+..+ .|...+ .+++|+|++++|++++. |+.|++|++....
T Consensus 221 ~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 221 KFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9999 999999999 559999999986654433321 133333 36999999999999998 9999999996543
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3e-26 Score=217.86 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=213.8
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC--CCCceeeeee
Q 013086 80 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL--ETGLALSLMN 157 (449)
Q Consensus 80 ~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~ 157 (449)
+|+|++ +++++++.|++|.+||..+++....+..++. +..++|+|+ +++|++++.|++|.+||+ .+++.+..+.
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 478888 7899999999999999999988887753444 899999999 999999999999999999 8888877765
Q ss_pred cCCCCCCCCCcccceeEEEEec----CCCEEEEEc-CCCeEEEEECCCCCCccceEEeec---------CCCceEEEEEc
Q 013086 158 VNPNGWHGPRTWRMLYGMDINP----EKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR---------KGSKVVGLHCN 223 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~ 223 (449)
... .+..++|+| +++++++++ .++.|.+||..+.+....+ .... ....+..+.++
T Consensus 220 ~g~----------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 220 IGI----------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CCS----------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECCEECSSSCCEESCCCEEEEEEC
T ss_pred cCC----------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-cccCcccCccccccCCceEEEEEC
Confidence 322 288999999 999999987 4899999999887765432 2111 12368899999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCCcccee
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
|....++++...++.|.+||+.+.+... .....+...+..+.|+|+|++|++++ .++.|.+||+.++++.... .
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i----~ 363 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV----D 363 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCE-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE----E
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcce-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee----c
Confidence 9556677788889999999998754432 22334566788899999999877655 5889999999988763211 1
Q ss_pred cCCCCccccceeeeeccCCCCCceEEEcceecccCCC-CCCcceEEEECCC-------ceEEEEEecCccceeceeeecC
Q 013086 303 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG-AALHPIDFIDITT-------GQLVAEVMDPNITTISPVNKLH 374 (449)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~v~~~~ 374 (449)
... ..+.......++|+. |.+++ ++ ..+++|.+||+.+ ++.++++..+. .....+ +++
T Consensus 364 ~g~-~ph~g~g~~~~~p~~--------g~~~~---s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v-~~~ 429 (543)
T 1nir_A 364 VGK-TPHPGRGANFVHPKY--------GPVWS---TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFI-KTH 429 (543)
T ss_dssp CSS-SBCCTTCEEEEETTT--------EEEEE---EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCE-ECC
T ss_pred cCC-CCCCCCCcccCCCCC--------ccEEE---eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEE-EcC
Confidence 110 001000011134442 33333 33 3578999999998 89999998876 455666 899
Q ss_pred CCCcEEeecC--------CCeEEEEcCCCchhh
Q 013086 375 PRDDVLASGS--------SRSIFIWRPKEKSEL 399 (449)
Q Consensus 375 ~~~~~l~s~s--------dg~i~iw~~~~~~~~ 399 (449)
|++++|++++ +++|.|||+.+++..
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999999976 579999999998866
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.3e-26 Score=212.83 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=152.3
Q ss_pred ceeeeccCccEEEEEEeC--------CCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe
Q 013086 66 CAVIRYHSRRVTCLEFHP--------TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 137 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~--------~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 137 (449)
+..+.||.+.|++++|+| ++ ++||+|+.|++|+|||+.+....... ..|...|.+++|+|++..+|++++
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEE
T ss_pred ecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecC
Confidence 456889999999999998 66 79999999999999999887776666 468899999999998446899999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCC----------------CCCCcccceeEEEEe-cCCCEEEEEcCCCeEEEEECCC
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGW----------------HGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDART 200 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~ 200 (449)
.|++|++||+.+++............ ....+...+.++.|+ +++..+++++.|+.+++||+..
T Consensus 207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 99999999999886554332211110 001223347788886 7999999999999999999987
Q ss_pred CCCccceEE---------------eecCCCceEEEEEcCC-CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 201 NSRSGEAIL---------------IHRKGSKVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 201 ~~~~~~~~~---------------~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
......+.. ............++|. ++.++++|+.||.|++||+.++..... ...|..+|.+
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~--~~~~~~~V~s 364 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI--PIQLGMPIVD 364 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE--EEECSSCEEE
T ss_pred CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE--ecCCCCcEEE
Confidence 654322110 0011111222334442 344677788899999999987655333 3458889999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 265 AYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
++|+|+|++||+++.+| +.+|.+
T Consensus 365 vafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 365 FCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEcCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999998765 666665
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=9.5e-26 Score=210.34 Aligned_cols=298 Identities=9% Similarity=0.054 Sum_probs=211.2
Q ss_pred cCccEEEEE---EeCCCCcEEEE-------------EcCCCcEEEEeCc--CC--eeeEEEecccCCceeEEEEeeCCCC
Q 013086 72 HSRRVTCLE---FHPTNNHILLS-------------GDKKGQVGVWDFY--KV--SEKIVYGNIHSCIVNNIRFNPTNDG 131 (449)
Q Consensus 72 h~~~V~~~~---~~~~~~~~l~t-------------~~~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~~~~~~~~~~ 131 (449)
....+..++ |+|++..+++. ++.++.+.||.+. ++ .....+ . ....+.+++|+|+ +.
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~s~~-~~ 135 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-K-TGFQPKSVRFIDN-TR 135 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-E-CSSCBCCCEESSS-SE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-c-CCCCceEEEEeCC-Ce
Confidence 455677888 88876433222 2333433555443 33 333333 2 3455679999996 88
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 132 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 132 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
++++++.++.|++||+.+++......... .. .+...+.+++|++++.++++++.++.|++||+.+++... ...
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~ 208 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEK--YK--KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVD 208 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHH--HH--TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCccc--cc--ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEc
Confidence 88888889999999999988775432110 00 112248999999999999999999999999998876543 233
Q ss_pred cCCCceEEEEEcCCCCCEE-EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee--------CCCc
Q 013086 212 RKGSKVVGLHCNPIQPELL-LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--------QDNR 282 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~ 282 (449)
.+...+.+++|+| ++..+ ++++.++.|++||+++.+ .+..+.....+.+++|+|++++|++++ .|+.
T Consensus 209 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~ 284 (433)
T 3bws_A 209 LTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKL---EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGR 284 (433)
T ss_dssp CSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTE---EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEE
T ss_pred CCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCc---EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCe
Confidence 4556899999999 77766 555589999999998643 344444566799999999999999988 4889
Q ss_pred EEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC
Q 013086 283 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 362 (449)
|++||+.+++..... .....+..+.|+|+ |+++.. ++..++.|++||+.+++.+..+...
T Consensus 285 i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~---------g~~l~~--~~~~~~~v~v~d~~~~~~~~~~~~~ 344 (433)
T 3bws_A 285 LGIYSMDKEKLIDTI---------GPPGNKRHIVSGNT---------ENKIYV--SDMCCSKIEVYDLKEKKVQKSIPVF 344 (433)
T ss_dssp EEEEETTTTEEEEEE---------EEEECEEEEEECSS---------TTEEEE--EETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEECCCCcEEeec---------cCCCCcceEEECCC---------CCEEEE--EecCCCEEEEEECCCCcEEEEecCC
Confidence 999999877542210 11112346788887 433220 4678899999999999988887633
Q ss_pred ccceeceeeecCCCCcEEeecC-C---------------CeEEEEcCCCchhhhhhhccc
Q 013086 363 NITTISPVNKLHPRDDVLASGS-S---------------RSIFIWRPKEKSELVEQKEEM 406 (449)
Q Consensus 363 ~~~~v~~v~~~~~~~~~l~s~s-d---------------g~i~iw~~~~~~~~~~~~~~~ 406 (449)
..+..+ +|+|++++|++++ + |.|++||+.+++.+..+..+.
T Consensus 345 --~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~ 401 (433)
T 3bws_A 345 --DKPNTI-ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN 401 (433)
T ss_dssp --SSEEEE-EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS
T ss_pred --CCCCeE-EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC
Confidence 456677 8999999888765 2 599999999988776665543
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.7e-26 Score=211.82 Aligned_cols=296 Identities=9% Similarity=0.016 Sum_probs=207.5
Q ss_pred cCccEEEEEEeCCCCcEEEEEc----CCC----cEEEEeC--cCCeeeEE-EecccCCceeEEEEeeCC-----------
Q 013086 72 HSRRVTCLEFHPTNNHILLSGD----KKG----QVGVWDF--YKVSEKIV-YGNIHSCIVNNIRFNPTN----------- 129 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~----~d~----~i~vwd~--~~~~~~~~-~~~~h~~~v~~~~~~~~~----------- 129 (449)
+...|....|.+.|..++++|+ .+| .|+|||+ .+++.+.. ...+|...+..+++++..
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3457888999999977888886 467 8999999 88776522 236788888887776510
Q ss_pred --CCeEEEEeCC------CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC---eEEEEEC
Q 013086 130 --DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDA 198 (449)
Q Consensus 130 --~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~ 198 (449)
+..++.++.+ +.|++||+..+. ...+..+.. .+.+++|+|+++.|++++.++ .|++||+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~---------~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~ 210 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQ---------PLMSPAWSPDGSKLAYVTFESGRSALVIQTL 210 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESS---------CEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCC---------cceeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 3455555543 799999998544 444433322 399999999999999998775 9999999
Q ss_pred CCCCCccceEEeecCCCceEEEEEcCCCCCEEE-EEeCCCe--EEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 199 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDHF--ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
.+++.. ....+...+.+++|+| +++.|+ +++.++. |++||+.+.+. .....|...+.+++|+|+|++|+
T Consensus 211 ~tg~~~----~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 211 ANGAVR----QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp TTCCEE----EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEE
T ss_pred CCCcEE----EeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECCCCCEEE
Confidence 987643 3334455799999999 888777 6666554 99999976433 33346778899999999999999
Q ss_pred EeeC-CC--cEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC
Q 013086 276 TTSQ-DN--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 352 (449)
Q Consensus 276 ~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~ 352 (449)
+++. ++ .|.+||+.+++... + ... . .....+.|+|+ |++++.......+..|++||+.+
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~~~----l-~~~--~--~~~~~~~~spd---------G~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAPQR----I-TWE--G--SQNQDADVSSD---------GKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCCEE----C-CCS--S--SEEEEEEECTT---------SSEEEEEEECSSCEEEEEEETTT
T ss_pred EEECCCCCcEEEEEECCCCCEEE----E-ecC--C--CcccCeEECCC---------CCEEEEEECcCCceEEEEEECCC
Confidence 8886 44 68888988765311 0 001 1 12236899998 55554211112246899999999
Q ss_pred ceEEEEEecCccceeceeeecCCCCcEEeecC-CC---eEEEEcCCCchhhhhhhccceE
Q 013086 353 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR---SIFIWRPKEKSELVEQKEEMKI 408 (449)
Q Consensus 353 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg---~i~iw~~~~~~~~~~~~~~~~~ 408 (449)
++.. .+..+. .+..+ +|+|+|++|++++ ++ .|++|++..+ ....+..+...
T Consensus 345 ~~~~-~l~~~~--~~~~~-~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~ 399 (415)
T 2hqs_A 345 GGVQ-VLSSTF--LDETP-SLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQ 399 (415)
T ss_dssp CCEE-ECCCSS--SCEEE-EECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSE
T ss_pred CCEE-EecCCC--CcCCe-EEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCC
Confidence 8874 444442 55666 8999999999988 65 8999998744 45555555433
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.4e-25 Score=208.31 Aligned_cols=322 Identities=11% Similarity=0.034 Sum_probs=219.4
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeC--cCCeeeEEEecccCCceeEEEEee----CCCCeEEE
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF--YKVSEKIVYGNIHSCIVNNIRFNP----TNDGTVYA 135 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s 135 (449)
...++..+..+.. +.+++|+|+| ++|++++.|+.|++||+ .+......+. +...+..++|+| + ++++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~d-g~~l~v 242 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYE-DRYTIA 242 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCT-TTEEEE
T ss_pred CceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCC-CCEEEE
Confidence 3445566663333 8999999999 68889999999999999 7777777664 566789999999 9 888888
Q ss_pred EeC-CCeEEEEeCCCCceeeeeecCCCCCCC--CCcccceeEEEEecCCCE-EEEEcCCCeEEEEECCCCCCccceEEee
Q 013086 136 ASS-DGTVSCTDLETGLALSLMNVNPNGWHG--PRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIH 211 (449)
Q Consensus 136 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 211 (449)
++. +++|.+||..+++.+..+......... ......+..+.++|++.. +++...++.|.+||..+.+..... ..
T Consensus 243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-~i- 320 (543)
T 1nir_A 243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-SI- 320 (543)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-EE-
T ss_pred EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-Ee-
Confidence 874 899999999999988887653211000 001124889999997764 556678899999999887654311 22
Q ss_pred cCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcCC-CCEEEEee-CCCcEEEE
Q 013086 212 RKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPS-GSKILTTS-QDNRLRIW 286 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vw 286 (449)
.....+..+.|+| ++++|+++ ..++.|.+||+.+++....+... .|.+....+ ++|+ +..++++. .|++|.+|
T Consensus 321 ~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 321 GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEE
Confidence 2344688999999 88866554 56889999999876554433321 254433333 5776 66666665 58999999
Q ss_pred eCCCCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccCCCC----CCcceEEEECCCceEE-EEEe
Q 013086 287 DSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGA----ALHPIDFIDITTGQLV-AEVM 360 (449)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~d~~i~iwd~~~~~~~-~~~~ 360 (449)
|+.+............ .+..+ ...+.+.++|+ |+++......+ .+++|.+||+.+++.. ..+.
T Consensus 399 d~~~~~~~~~~~~~v~--~l~~~g~~~~~v~~~pd---------g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 467 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVA--ELQGQGGGSLFIKTHPK---------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 467 (543)
T ss_dssp ECCTTTCTTTBTSEEE--EEECSCSCCCCEECCTT---------CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred EeCCCCCchhcCeEEE--EEEcCCCCceEEEcCCC---------CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee
Confidence 9987321000000011 11111 12246788998 56555211111 2679999999999877 4431
Q ss_pred -------cCccceeceeeecCCCCcEEeec-----C-CCeEEEEcCCCchhhhhhhc
Q 013086 361 -------DPNITTISPVNKLHPRDDVLASG-----S-SRSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 361 -------~~~~~~v~~v~~~~~~~~~l~s~-----s-dg~i~iw~~~~~~~~~~~~~ 404 (449)
..+...+..+ +|+|+|+.|+++ + |+.|.|||.++++++..++.
T Consensus 468 v~~~~~~~~~~~~~~~~-~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 468 IAEWADLGEGAKRVVQP-EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHHHHCCCSSCCEEEEE-EECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred chhhcccCCCCCceEec-cCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 1223566677 899999988854 4 69999999999998877764
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.9e-24 Score=193.69 Aligned_cols=285 Identities=10% Similarity=0.092 Sum_probs=186.5
Q ss_pred cEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-CeEEEEeCC--CCceeeeeecCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-GTVSCTDLE--TGLALSLMNVNPNG 162 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~ 162 (449)
.++++++.|+.|++|++.. +.........+...+.+++|+|+ +++|++++.+ +.|.+|++. ++...........
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 4556668899999999953 32222222347788999999999 8888888876 999999997 5553322222111
Q ss_pred CCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe-CCCeEE
Q 013086 163 WHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFAR 240 (449)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 240 (449)
..+..++|+|+++++++++ .++.|.+||+..+... ...........+.+++|+| +++++++++ .++.|.
T Consensus 84 -------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 84 -------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-GVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRIC 154 (343)
T ss_dssp -------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-EEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEE
T ss_pred -------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-cccccccCCCCceEEEECC-CCCEEEEecCCCCEEE
Confidence 1278999999999887665 5889999999522211 1222223334688999999 888777776 899999
Q ss_pred EEEccC-CCCCCc---eeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC--CCCCCCCccce-ecCCCCccccc
Q 013086 241 IWDIRR-LEAGSS---LCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHLTP 312 (449)
Q Consensus 241 iwd~~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~~~ 312 (449)
+||+.+ .+.... .........+..++|+|++++|++++ .++.|.+|++.. ++... ..... ....+.....+
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 233 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWA 233 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE-EeeccccCccccccCCc
Confidence 999976 322111 11123445788999999999776555 789999999954 32210 00000 01111112233
Q ss_pred eeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC--C--ceEEEEEecCccceeceeeecCCCCcEEeecC--CC
Q 013086 313 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--T--GQLVAEVMDPNITTISPVNKLHPRDDVLASGS--SR 386 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~--~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--dg 386 (449)
..+.|+|+ |+++.. ++..++.|.+||+. + .+.+..+..+. .+..+ +|+|+|++|++++ ++
T Consensus 234 ~~i~~s~d---------g~~l~v--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 234 ADIHITPD---------GRHLYA--CDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGF-NVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp EEEEECTT---------SSEEEE--EETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCE-EECTTSSEEEEECTTTC
T ss_pred cceEECCC---------CCEEEE--EecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceE-EECCCCCEEEEecCCCC
Confidence 46889998 544431 34567899999998 3 34555555443 26667 8999999877765 79
Q ss_pred eEEEEcC--CCch
Q 013086 387 SIFIWRP--KEKS 397 (449)
Q Consensus 387 ~i~iw~~--~~~~ 397 (449)
.|.+|++ .+++
T Consensus 300 ~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 300 HISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEEETTTTE
T ss_pred eEEEEEEcCCCce
Confidence 9999954 4553
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.4e-23 Score=188.23 Aligned_cols=298 Identities=12% Similarity=0.082 Sum_probs=199.1
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEEEEeCCCCce-eeee
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLA-LSLM 156 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~ 156 (449)
..|.+++..++++++.++.|.+||+.+++....+. .+...+ .++|+|+ ++++++++. ++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 34666666778899999999999999988777664 455666 9999999 776666555 89999999999887 5555
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC---eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC-EEEE
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-LLLS 232 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~ 232 (449)
...... ..+++|+|++++++++..++ .|.+||+.+++.... ........+++|+| +++ ++++
T Consensus 80 ~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----~~~~~~~~~~~~sp-dg~~l~~~ 145 (331)
T 3u4y_A 80 QEGQSS---------MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----IPIPYDAVGIAISP-NGNGLILI 145 (331)
T ss_dssp EECSSC---------CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE----EECCTTEEEEEECT-TSSCEEEE
T ss_pred ccCCCC---------ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE----EECCCCccceEECC-CCCEEEEE
Confidence 443321 33499999999999665553 899999988765422 22333679999999 776 5555
Q ss_pred EeCCCe-EEEEEccCCCCCCc--eeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 233 CGNDHF-ARIWDIRRLEAGSS--LCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 233 ~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
...++. |.+|++........ .........+..++|+|+|++|++++ .++.|.+||+.+++.......+. .
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~------~ 219 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG------T 219 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE------C
T ss_pred ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc------C
Confidence 566688 99999874322111 12223455689999999999665554 68899999998877521111111 1
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE--EEEEecC---cccee---ceeeecCCCCcEE
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL--VAEVMDP---NITTI---SPVNKLHPRDDVL 380 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~---~~~~v---~~v~~~~~~~~~l 380 (449)
...+..+.|+|+ |+++.. +...++.|.+||+.+++. +..+... ..... ..+ +|+|++++|
T Consensus 220 ~~~~~~~~~spd---------g~~l~v--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l 287 (331)
T 3u4y_A 220 NNLPGTIVVSRD---------GSTVYV--LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM-ALNKTETKL 287 (331)
T ss_dssp SSCCCCEEECTT---------SSEEEE--ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE-EECTTSSEE
T ss_pred CCCCceEEECCC---------CCEEEE--EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccce-EECCCCCEE
Confidence 123346889998 554331 234577899999999887 4444322 01111 235 799999988
Q ss_pred eecC--CCeEEEEcCCCchh--hhhhhccceEEEE
Q 013086 381 ASGS--SRSIFIWRPKEKSE--LVEQKEEMKIIVC 411 (449)
Q Consensus 381 ~s~s--dg~i~iw~~~~~~~--~~~~~~~~~~~~c 411 (449)
++++ ++.|.+|++..... +..+.....+..|
T Consensus 288 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~ 322 (331)
T 3u4y_A 288 FISANISRELKVFTISGKVVGYVAGIEANGGIAIC 322 (331)
T ss_dssp EEEETTTTEEEEEETTSCEEEECTTCCCBSCEEEC
T ss_pred EEecCCCCcEEEEEecCCcccceecccccCCeEEE
Confidence 6644 68999999987653 2233333444444
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=8e-24 Score=195.35 Aligned_cols=265 Identities=11% Similarity=0.088 Sum_probs=190.2
Q ss_pred eeeeccCccEEEEEEeCC--------------CCcEEEEEcCC------CcEEEEeCcCCeeeEEEecccCCceeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPT--------------NNHILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN 126 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~--------------~~~~l~t~~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~ 126 (449)
..+.+|...+..+++++. +.+ ++.++.+ +.|++||+.... ...+ ..|...+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~-l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR-IAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE-EEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE-EEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEc
Confidence 457788888877777641 434 4444433 799999998644 3333 4589999999999
Q ss_pred eCCCCeEEEEeCCC---eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEE-EEcCCC--eEEEEECCC
Q 013086 127 PTNDGTVYAASSDG---TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFG--FLYLVDART 200 (449)
Q Consensus 127 ~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~ 200 (449)
|+ ++.|++++.++ .|++||+.+++..... .+.. .+.+++|+|+++.|+ +++.++ .|++||+.+
T Consensus 188 pd-g~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~---------~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 188 PD-GSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR---------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 256 (415)
T ss_dssp TT-SSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSS---------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CC-CCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCC---------cccCEEEcCCCCEEEEEEecCCCceEEEEECCC
Confidence 99 99999999875 9999999998775432 2211 389999999999888 565555 599999988
Q ss_pred CCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEe
Q 013086 201 NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
++. .....+...+.+++|+| +++.|++++. ++ .|++||+.+.+. .....+...+.+++|+|+|++|+++
T Consensus 257 ~~~----~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 257 GQI----RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp CCE----EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred CCE----EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCEEEEE
Confidence 653 23344556799999999 9998888876 44 678888876432 2223466789999999999999988
Q ss_pred eCC---CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc---ceEEEECC
Q 013086 278 SQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH---PIDFIDIT 351 (449)
Q Consensus 278 ~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~---~i~iwd~~ 351 (449)
+.+ ..|.+||+.+++... +... .....+.|+|+ |++++ .++.++ .|++||+.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~~-----l~~~-----~~~~~~~~spd---------g~~l~---~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQV-----LSST-----FLDETPSLAPN---------GTMVI---YSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EECSSCEEEEEEETTTCCEEE-----CCCS-----SSCEEEEECTT---------SSEEE---EEEEETTEEEEEEEETT
T ss_pred ECcCCceEEEEEECCCCCEEE-----ecCC-----CCcCCeEEcCC---------CCEEE---EEEcCCCccEEEEEECC
Confidence 864 589999998876421 1111 13357899998 55554 233333 79999986
Q ss_pred CceEEEEEecCccceeceeeecCCCCc
Q 013086 352 TGQLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
+.....+..+. ..+..+ +|+|...
T Consensus 387 -g~~~~~l~~~~-~~v~~~-~~~~~~~ 410 (415)
T 2hqs_A 387 -GRFKARLPATD-GQVKFP-AWSPYLH 410 (415)
T ss_dssp -SCCEEECCCSS-SEEEEE-EECCCCC
T ss_pred -CCcEEEeeCCC-CCCcCC-ccccccc
Confidence 55566776665 678888 8999653
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=8e-24 Score=190.26 Aligned_cols=280 Identities=14% Similarity=0.115 Sum_probs=197.6
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCC-ceeEEEEeeCCCCeE-EEEeCCCeEEEEeCCCCceeeeeecCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWH 164 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 164 (449)
.+|++++.++.|.+||+.+++....+..++.. .+..++|+|+ ++.+ +++..++.|.+||+.+++....+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 47899999999999999998877776433322 5889999999 6554 56666899999999999887766543210
Q ss_pred CCCcccceeEEEEecCCCEEEEEc------------CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 165 GPRTWRMLYGMDINPEKGVVLVAD------------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
.....+..++|+|++++++++. .++.|.+||+.+++.... ......+.+++|+| ++++|++
T Consensus 79 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~----~~~~~~~~~~~~s~-dg~~l~~ 151 (337)
T 1pby_B 79 --ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA----FEAPRQITMLAWAR-DGSKLYG 151 (337)
T ss_dssp --EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE----EECCSSCCCEEECT-TSSCEEE
T ss_pred --cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE----EeCCCCcceeEECC-CCCEEEE
Confidence 0011267899999999998886 579999999987654321 12233678899999 8887777
Q ss_pred EeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC------------------------cEEEEeC
Q 013086 233 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN------------------------RLRIWDS 288 (449)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i~vwd~ 288 (449)
+ ++.|++||+.+.+....+....... .+.|+|++..|+..+..+ .|.+||+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 7 6889999998754422222111112 237899988776655432 4689999
Q ss_pred CCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 289 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
.+++.. . .. ... ....+..+.|+|+ |+++. .+ ++.|.+||+.+++.+..+..+. .+.
T Consensus 227 ~~~~~~-~-~~-~~~----~~~~~~~~~~s~d---------g~~l~---~~--~~~v~~~d~~~~~~~~~~~~~~--~~~ 283 (337)
T 1pby_B 227 ETGEMA-M-RE-VRI----MDVFYFSTAVNPA---------KTRAF---GA--YNVLESFDLEKNASIKRVPLPH--SYY 283 (337)
T ss_dssp TTCCEE-E-EE-EEE----CSSCEEEEEECTT---------SSEEE---EE--ESEEEEEETTTTEEEEEEECSS--CCC
T ss_pred CCCCce-E-ee-cCC----CCCceeeEEECCC---------CCEEE---Ee--CCeEEEEECCCCcCcceecCCC--cee
Confidence 887652 0 00 000 1122346889998 65555 22 6889999999999888876543 455
Q ss_pred eeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 369 PVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 369 ~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
.+ +|+|+|++|++++ ++.|++||+.+++.+..+..+
T Consensus 284 ~~-~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 284 SV-NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EE-EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eE-EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 66 8999999888888 999999999999877665443
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.8e-22 Score=182.65 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=202.1
Q ss_pred cCccEEEEEEeCCCCcEEEEEcC-------CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCe-EEEEeCCCeEE
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDK-------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT-VYAASSDGTVS 143 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~-------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~dg~v~ 143 (449)
....+..++|+|+++. +++++. ++.|.+||..+++....+. ....+..++|+|+ ++. +++...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d-g~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT-TQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTE-EEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT-TTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC-CCEEEEEecCCCEEE
Confidence 3456889999999954 555442 5689999999988777764 3455889999999 764 45556689999
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--CCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
+||..+++....+...............+.+++|+|+++.+++++ .++.|.+||+.+++... ........+..++
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMSTGLA 191 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCCCCE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccceEE
Confidence 999999998887766432211111112368899999999887775 47899999998876442 2222333588999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--CCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCc
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 298 (449)
|+| +++.+++++.++.|.+||+.+.+....+... ++...+..++|+|++++|++++. ++.|.+||+.+++.....
T Consensus 192 ~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~- 269 (353)
T 3vgz_A 192 LDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV- 269 (353)
T ss_dssp EET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE-
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-
Confidence 999 9999999999999999999875543333221 24556888999999998777665 589999999887653211
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
.. . .+..+.|+|+ |+++.. +...++.|.+||+.+++.+..+..+. ....+ +|+|+|+
T Consensus 270 ---~~---~---~~~~~~~s~d---------g~~l~v--~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~-~~s~dg~ 326 (353)
T 3vgz_A 270 ---AA---P---ESLAVLFNPA---------RNEAYV--THRQAGKVSVIDAKSYKVVKTFDTPT--HPNSL-ALSADGK 326 (353)
T ss_dssp ---EC---S---SCCCEEEETT---------TTEEEE--EETTTTEEEEEETTTTEEEEEEECCS--EEEEE-EECTTSC
T ss_pred ---Ec---C---CCceEEECCC---------CCEEEE--EECCCCeEEEEECCCCeEEEEEecCC--CCCeE-EEcCCCC
Confidence 11 1 1135788887 443221 34567899999999999998887653 45666 8999999
Q ss_pred EEeecC
Q 013086 379 VLASGS 384 (449)
Q Consensus 379 ~l~s~s 384 (449)
+|+++.
T Consensus 327 ~l~v~~ 332 (353)
T 3vgz_A 327 TLYVSV 332 (353)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777655
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.3e-23 Score=209.38 Aligned_cols=283 Identities=8% Similarity=0.052 Sum_probs=197.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcC-CC-----cEEEEeCcCCeeeEEEecccC------------------------CceeE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDK-KG-----QVGVWDFYKVSEKIVYGNIHS------------------------CIVNN 122 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~-d~-----~i~vwd~~~~~~~~~~~~~h~------------------------~~v~~ 122 (449)
...|.+++|+||| ++|++++. |+ .|++||+.++...... ..+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4569999999999 67888877 88 8999999988766555 2332 23889
Q ss_pred EEEeeCCCCeEEEEeCCCeEEEEeCCCC---ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC
Q 013086 123 IRFNPTNDGTVYAASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 199 (449)
Q Consensus 123 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 199 (449)
++|+|+ +++|++++. +.|++||+.++ ... .+..+. ..+..++|+|||++|++++. +.|++||+.
T Consensus 114 ~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~---------~~~~~~~~SPDG~~la~~~~-~~i~~~d~~ 180 (741)
T 2ecf_A 114 YQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGE---------GFATDAKLSPKGGFVSFIRG-RNLWVIDLA 180 (741)
T ss_dssp CEECTT-SSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSS---------SCEEEEEECTTSSEEEEEET-TEEEEEETT
T ss_pred eEECCC-CCEEEEEeC-CcEEEEECCCCCcceEE-EcccCC---------cccccccCCCCCCEEEEEeC-CcEEEEecC
Confidence 999999 999998886 89999999987 433 222211 23899999999999998874 599999998
Q ss_pred CCCCccceEEeecCCC----------------ceEEEEEcCCCCCEEEEEeCCC--------------------------
Q 013086 200 TNSRSGEAILIHRKGS----------------KVVGLHCNPIQPELLLSCGNDH-------------------------- 237 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg-------------------------- 237 (449)
++..... ...... .+..++|+| +++.|++++.|+
T Consensus 181 ~g~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 181 SGRQMQL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp TTEEEEC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred CCCEEEe---ccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 7643211 111111 147799999 999998887665
Q ss_pred -------eEEEEEccC-CCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCCccceec
Q 013086 238 -------FARIWDIRR-LEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ-----DNRLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 238 -------~i~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
.|++||+.+ .+.. .+... .+...+..++| |||++|++++. +..|++||+.+++... ....
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~ 330 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQ-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV----LAHE 330 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCE-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE----EEEE
T ss_pred CCCCCeeEEEEEECCCCCceE-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE----EEEc
Confidence 788999876 5432 12111 46778999999 99999987764 5689999998876522 1111
Q ss_pred CCCCccc-cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC-CceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 304 HDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 304 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
.. .... ....+.|+|+ |+++. ++..++.++||.+. ++. ...+..+. ..+..+..|+|+++.|+
T Consensus 331 ~~-~~~~~~~~~~~~spd---------g~~~~---~~~~~g~~~l~~~~~~~~-~~~l~~~~-~~v~~~~~~s~dg~~l~ 395 (741)
T 2ecf_A 331 TS-PTWVPLHNSLRFLDD---------GSILW---SSERTGFQHLYRIDSKGK-AAALTHGN-WSVDELLAVDEKAGLAY 395 (741)
T ss_dssp EC-SSCCCCCSCCEECTT---------SCEEE---EECTTSSCEEEEECSSSC-EEESCCSS-SCEEEEEEEETTTTEEE
T ss_pred CC-CCcCCcCCceEECCC---------CeEEE---EecCCCccEEEEEcCCCC-eeeeeecc-eEEEeEeEEeCCCCEEE
Confidence 11 1111 1125789998 55443 45667777888765 455 66666654 44555436999998776
Q ss_pred e-cC-CC--eEEEEcCCC
Q 013086 382 S-GS-SR--SIFIWRPKE 395 (449)
Q Consensus 382 s-~s-dg--~i~iw~~~~ 395 (449)
. ++ ++ .++||++..
T Consensus 396 ~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 396 FRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEECSSCTTCBEEEEEET
T ss_pred EEEeCCCCceEEEEEEEc
Confidence 5 45 55 899998864
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=3.5e-22 Score=175.91 Aligned_cols=256 Identities=13% Similarity=0.184 Sum_probs=175.3
Q ss_pred EEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC-CceeeeeecCCCCCCCCCcc
Q 013086 91 SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTW 169 (449)
Q Consensus 91 t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 169 (449)
+++.|+.|++||+.++...... .|...|.+++|+|+ +++|++++ ++.|++||+.+ ++.......+. .
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--------~ 84 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--------T 84 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTC--------C
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEeccccc--------c
Confidence 4567899999999988766544 48899999999999 88888887 78999999998 77655443221 1
Q ss_pred cceeEEEEecCCCEEEEEc--CCC--eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE-EEeCCCeEEEEEc
Q 013086 170 RMLYGMDINPEKGVVLVAD--NFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDHFARIWDI 244 (449)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~--~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~ 244 (449)
..+.+++|+|++++|+++. .++ .|..|++.+... ..... ...+..++|+| +++.|+ +++.++.+.+|++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP----RLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC----EECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce----EEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence 2378899999999999988 334 555555554432 12222 22588999999 888766 7888999999997
Q ss_pred cCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC-CCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 245 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
.... ........+...+.++.|+|++++|++++ .++.+++|++.. +.... .+.. .......+.|+|+
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~----~~~~----~~~~~~~~~~s~d-- 227 (297)
T 2ojh_A 159 DIDS-GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE----RITD----SAYGDWFPHPSPS-- 227 (297)
T ss_dssp ETTT-CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE----ECCC----CSEEEEEEEECTT--
T ss_pred ECCC-CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE----EEec----CCcccCCeEECCC--
Confidence 5322 22233336778899999999999888766 589999998862 22110 0111 1112346789998
Q ss_pred CCceEEEcceecccCC-CC-------CCcceEEEECCCceEEEE--EecCccceeceeeecCCCCcEEeecC
Q 013086 323 SESLAVIGRYISENYN-GA-------ALHPIDFIDITTGQLVAE--VMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~-~~-------~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
|++++.... +. .++.|.+||+.+++.... +.++. ..+..+ +|+|++++|++++
T Consensus 228 -------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~-~~spdg~~l~~~~ 290 (297)
T 2ojh_A 228 -------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ-GTMNSP-NWSPDGDEFAYVR 290 (297)
T ss_dssp -------SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST-TTSCSC-CBCTTSSEEEEEE
T ss_pred -------CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC-cccccc-eECCCCCEEEEEE
Confidence 444431100 00 236799999998876433 33443 556667 8999999999877
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.1e-21 Score=177.21 Aligned_cols=280 Identities=9% Similarity=0.085 Sum_probs=177.3
Q ss_pred CCCcEEEEeCcC--CeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCCCCceeeeee--cCCCCCCCC
Q 013086 94 KKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMN--VNPNGWHGP 166 (449)
Q Consensus 94 ~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~--~~~~~~~~~ 166 (449)
.++.|.+|.+.. +.........+...+..++|+|+ ++ |++++. ++.|.+|++.++....... ...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd-g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~------ 85 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK-DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG------ 85 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT-CE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC-Ce-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC------
Confidence 355677777653 44333222346677889999998 77 555543 6899999998776432221 111
Q ss_pred CcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEeec---------CCCceEEEEEcCCCCCEEEEEeCC
Q 013086 167 RTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR---------KGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
..+..++|+|++++|++++ .++.|.+|++.............. ....+.+++|+| +++++++...+
T Consensus 86 ---~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~ 161 (347)
T 3hfq_A 86 ---TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGS 161 (347)
T ss_dssp ---CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTT
T ss_pred ---CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCC
Confidence 1278899999999888877 789999999964322222212211 112488899999 88877777778
Q ss_pred CeEEEEEccCCCCCCcee--ecCCCCcEEEEEEcCCCCEEEE-eeCCCcEEEEeCCC--CCCCCCCccce-ecCCCCccc
Q 013086 237 HFARIWDIRRLEAGSSLC--DLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHL 310 (449)
Q Consensus 237 g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~ 310 (449)
+.|.+|++.......... .......+..++|+|+|++|++ ...++.|.+|++.. ++... ..... ....+....
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHN 240 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCC
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-eeeeeecCCCCCCCC
Confidence 999999997321111111 1123346788999999997666 45688999999874 33210 00000 011111112
Q ss_pred cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC-c--eEEEEEecCccceeceeeecCCCCcEEeecC--C
Q 013086 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-G--QLVAEVMDPNITTISPVNKLHPRDDVLASGS--S 385 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~-~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--d 385 (449)
.+..++|+|+ |+++.. +...++.|.+|++.. + +.+..+..+. ..+..+ +|+|+|++|++++ +
T Consensus 241 ~~~~i~~spd---------G~~l~v--~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~-~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 241 GAAAIRLSHD---------GHFLYV--SNRGYNTLAVFAVTADGHLTLIQQISTEG-DFPRDF-DLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EEEEEEECTT---------SCEEEE--EEETTTEEEEEEECGGGCEEEEEEEECSS-SCCCEE-EECTTSSEEEEEETTT
T ss_pred cceeEEECCC---------CCEEEE--EeCCCCEEEEEEECCCCcEEEeEEEecCC-CCcCeE-EECCCCCEEEEEEcCC
Confidence 3456889998 655421 344578899999973 2 4455554433 345666 8999999888766 5
Q ss_pred CeEEEE--cCCCchhh
Q 013086 386 RSIFIW--RPKEKSEL 399 (449)
Q Consensus 386 g~i~iw--~~~~~~~~ 399 (449)
+.|.+| +..+|+..
T Consensus 308 ~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 308 DNATLYARDLTSGKLS 323 (347)
T ss_dssp TEEEEEEECTTTCCEE
T ss_pred CcEEEEEEeCCCCeEE
Confidence 999999 55666643
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.6e-21 Score=174.91 Aligned_cols=264 Identities=8% Similarity=0.060 Sum_probs=177.4
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-eEEEecccCCceeEEEEeeCCCCeEEEEeCCC---e
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG---T 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~ 141 (449)
+..+..+...+ +++|+|+|..+++++..++.|.+||+.++.. ...+ ..+..+..+++|+|+ +++++++..++ .
T Consensus 33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 33 LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPD-DQFAVTVTGLNHPFN 109 (331)
T ss_dssp EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTT-SSEEEECCCSSSSCE
T ss_pred eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCC-CCEEEEecCCCCccc
Confidence 34555556667 9999999954556666689999999998876 4444 445555555999999 88888555553 8
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCe-EEEEECCCCCCccce-EEeecCCCceE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGF-LYLVDARTNSRSGEA-ILIHRKGSKVV 218 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~~-~~~~~~~~~v~ 218 (449)
|.+||+.+++.+..+.... ...+++|+|++++++++ ..++. |.+|++......... .........+.
T Consensus 110 i~v~d~~~~~~~~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIPY----------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp EEEEETTTTEEEEEEECCT----------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred EEEEECCCCCeEEEEECCC----------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence 9999999998877765432 26899999999866555 55577 999998864432211 11123344689
Q ss_pred EEEEcCCCCCEE-EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCC
Q 013086 219 GLHCNPIQPELL-LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSP 296 (449)
Q Consensus 219 ~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 296 (449)
.++|+| +++++ +++..++.|.+||+.+.+....+..+.....+..++|+|+|++|++++ .++.|.+||+.+++....
T Consensus 180 ~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 180 NITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred ceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 999999 88855 555568999999998755522244444556778999999999776655 578899999988765110
Q ss_pred CccceecCCC-Ccc-ccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 297 SREIVHSHDF-NRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 297 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
......... ... .....+.|+|+ |+++.. ++..++.|.+||+.+...
T Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~spd---------g~~l~v--~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 259 -KSFGHGLLIDPRPLFGANQMALNKT---------ETKLFI--SANISRELKVFTISGKVV 307 (331)
T ss_dssp -EEEECCCCCCCGGGTTCCCEEECTT---------SSEEEE--EETTTTEEEEEETTSCEE
T ss_pred -cccccccccCCCCcccccceEECCC---------CCEEEE--ecCCCCcEEEEEecCCcc
Confidence 000000000 000 00124688988 554431 345677999999976553
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.5e-22 Score=200.67 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=194.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC----
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET---- 149 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~---- 149 (449)
..|.+++|+|+ ..++++. ++.|++||+.++...... .+...+.+++|+|+ ++.|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd-G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV-GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT-SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEEcc--CCcccccCCcCCCC-CCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 4655553 599999999887665443 36778999999999 8888885 589999999998
Q ss_pred -CceeeeeecCCCCC-CC----CCcccceeEEEEecCCCEEEEEc---------------------------------CC
Q 013086 150 -GLALSLMNVNPNGW-HG----PRTWRMLYGMDINPEKGVVLVAD---------------------------------NF 190 (449)
Q Consensus 150 -~~~~~~~~~~~~~~-~~----~~~~~~i~~~~~~~~~~~l~~~~---------------------------------~d 190 (449)
++............ .+ ......+.+++|+||+++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 76554332211100 00 00011257899999999999987 45
Q ss_pred CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC-----eEEEEEccCCCCCCceeecCCC---CcE
Q 013086 191 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHK---RVV 262 (449)
Q Consensus 191 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v 262 (449)
..|++||+.++...... ....+...+.+++|+| +++.|++++.++ .|++||+.+++....+....+. ..+
T Consensus 235 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQ-TGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEETTTTEEEECC-CCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eEEEEEECCCCceEeec-cCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 78999999876532111 1123445789999999 999898887765 8999999875222222211122 234
Q ss_pred EEEEEcC--CCCEEEEeeCCCcEEEEeCC-CCCCCCCCccceecCCCCcccccee-eeeccCCCCCceEEEcceecccCC
Q 013086 263 NSAYFSP--SGSKILTTSQDNRLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 263 ~~~~~~~--~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
..+.|+| +|++|++++.|+.++||.+. ++.... .+..+ ...... +.|+|+ |+.+.. +
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~----~l~~~----~~~v~~~~~~spd---------g~~l~~--~ 373 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR----QVTKG----EWEVTNFAGFDPK---------GTRLYF--E 373 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE----ECCCS----SSCEEEEEEECTT---------SSEEEE--E
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE----ecCCC----CeEEEeeeEEcCC---------CCEEEE--E
Confidence 6789999 99999999999999999875 332211 01111 111123 689998 443321 2
Q ss_pred CCCC----cceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-C----CeEEEEcCCCch
Q 013086 339 GAAL----HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S----RSIFIWRPKEKS 397 (449)
Q Consensus 339 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d----g~i~iw~~~~~~ 397 (449)
+..+ ..|..||+.+++. ..+. +. ..+..+ +|+|||++|+.+. + +.|++|++.+++
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~~-~~l~-~~-~~~~~~-~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGKT-KDLT-PE-SGMHRT-QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCCC-EESC-CS-SSEEEE-EECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecCCCCceEEEEEEEcCCCCc-eecc-CC-CceEEE-EECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2333 3677778877763 3333 22 446666 8999999888753 3 679999998876
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=5.6e-23 Score=204.31 Aligned_cols=291 Identities=8% Similarity=0.065 Sum_probs=191.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC---ceeEEEEeeCCCCeEEEEeCC---------CeE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASSD---------GTV 142 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d---------g~v 142 (449)
.+.+++|+|+| +++++ +.||.|++||+.++.....+ ..|.. .|.+++|+|+ +++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC-CCEEEEEecCccceeecceeeE
Confidence 36678999999 56666 67999999999998776665 45554 4999999999 9999998764 788
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC--------
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-------- 214 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------- 214 (449)
.+||+.+++.. .+..... ....+..++|+|||+.|++++. +.|++||+.++.... +...+...
T Consensus 94 ~~~d~~~~~~~-~l~~~~~------~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 94 VLSKIPHGDPQ-SLDPPEV------SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSD 164 (723)
T ss_dssp EEEESSSCCCE-ECCCTTC------CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE-EECCCBTTTEEEEECC
T ss_pred EEEECCCCceE-eccCCcc------ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE-EecCCCCCceECcccc
Confidence 99999988762 2221111 1112778999999999999886 799999998866432 11111110
Q ss_pred --------CceEEEEEcCCCCCEEEEEeCCC----------------------------------eEEEEEccCCCCCCc
Q 013086 215 --------SKVVGLHCNPIQPELLLSCGNDH----------------------------------FARIWDIRRLEAGSS 252 (449)
Q Consensus 215 --------~~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~ 252 (449)
..+.+++|+| +++.|++++.++ .|++||+.+.+....
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE
Confidence 1237899999 999999887543 799999987553222
Q ss_pred eeec----CCCCcEEEEEEcCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCccceecCCCCcccc--ceeeeeccCCC
Q 013086 253 LCDL----PHKRVVNSAYFSPSGSKILTTSQ----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAEWDPKDP 322 (449)
Q Consensus 253 ~~~~----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 322 (449)
+... .+...+..++|+|||++|++.+. +..|++||+.+++.... .... ...... ...+.|+|+
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~----~~~~-~~~~~~~~~~~~~~spd-- 316 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK----HEDE-SEAWLHRQNEEPVFSKD-- 316 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE----EEEE-CSSCCCCCCCCCEECTT--
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE----EEec-cCCEEeccCCCceEcCC--
Confidence 2110 13567899999999998877653 35799999988764221 1110 011111 125789998
Q ss_pred CCceEEEcceecccCCCCCCc------ceEEEE-CCCce--EEEEEecCccceeceeeecCCCCcEEeecC--C--CeEE
Q 013086 323 SESLAVIGRYISENYNGAALH------PIDFID-ITTGQ--LVAEVMDPNITTISPVNKLHPRDDVLASGS--S--RSIF 389 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~------~i~iwd-~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s--d--g~i~ 389 (449)
|+.++.. ++..++ .|.+|| ..++. ....+..++ ..+..+.+|+|||+.|+..+ + +.++
T Consensus 317 -------g~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 317 -------GRKFFFI-RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp -------SCSEEEE-EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred -------CCeEEEE-EecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 4333210 022233 577788 34444 144444333 22333227999999987654 4 8899
Q ss_pred EEcCCC
Q 013086 390 IWRPKE 395 (449)
Q Consensus 390 iw~~~~ 395 (449)
||++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999864
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.7e-21 Score=175.44 Aligned_cols=252 Identities=15% Similarity=0.164 Sum_probs=164.5
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCC-CcEEEEeCc--CCeee--EEEecccCCceeEEEEeeCCCCeEEEEeC-CCeEE
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKK-GQVGVWDFY--KVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVS 143 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d-~~i~vwd~~--~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~ 143 (449)
..|...+.+++|+|+| ++|++++.+ +.|.+|++. ++... ..+ . ....+..++|+|+ +++|++++. ++.|.
T Consensus 34 ~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~d-g~~l~~~~~~~~~i~ 109 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAES-A-LPGSLTHISTDHQ-GQFVFVGSYNAGNVS 109 (343)
T ss_dssp EECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEE-E-CSSCCSEEEECTT-SSEEEEEETTTTEEE
T ss_pred EecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeecccc-c-cCCCCcEEEEcCC-CCEEEEEecCCCeEE
Confidence 3467789999999999 456666655 999999997 44432 233 2 2337899999999 877766654 88999
Q ss_pred EEeCCCC---ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCC-CCCccceE---EeecCCC
Q 013086 144 CTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDART-NSRSGEAI---LIHRKGS 215 (449)
Q Consensus 144 iwd~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~---~~~~~~~ 215 (449)
+||+..+ +....+... ..+.+++|+|+++++++++ .++.|.+||+.+ +... ... .......
T Consensus 110 ~~d~~~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 110 VTRLEDGLPVGVVDVVEGL----------DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV-AQDPAEVTTVEGA 178 (343)
T ss_dssp EEEEETTEEEEEEEEECCC----------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-EEEEEEEECSTTC
T ss_pred EEECCCCccccccccccCC----------CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee-eecccccccCCCC
Confidence 9999533 333332211 1278899999999888877 889999999987 4322 111 1122334
Q ss_pred ceEEEEEcCCCCCEEEE-EeCCCeEEEEEccC--CCC--CCceeecC----CCCcEEEEEEcCCCCEEEEe-eCCCcEEE
Q 013086 216 KVVGLHCNPIQPELLLS-CGNDHFARIWDIRR--LEA--GSSLCDLP----HKRVVNSAYFSPSGSKILTT-SQDNRLRI 285 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~dg~i~v 285 (449)
.+..++|+| +++++++ +..++.|.+|++.. +.. ...+.... ....+..++|+|++++|+++ ..++.|.+
T Consensus 179 ~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 788999999 8886654 45789999999954 211 01111111 13456789999999988754 47899999
Q ss_pred EeCCC--CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE--ECCCceE
Q 013086 286 WDSIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQL 355 (449)
Q Consensus 286 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw--d~~~~~~ 355 (449)
||+.. +.. .. ... ......+..+.|+|+ |+++.. ++..++.|.+| |..+++.
T Consensus 258 ~d~~~~~~~~----~~-~~~--~~~~~~~~~~~~s~d---------g~~l~~--~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 258 FSVSEDGSVL----SK-EGF--QPTETQPRGFNVDHS---------GKYLIA--AGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEECTTSCCE----EE-EEE--EECSSSCCCEEECTT---------SSEEEE--ECTTTCEEEEEEEETTTTEE
T ss_pred EEEcCCCCce----EE-eee--ecCCCccceEEECCC---------CCEEEE--ecCCCCeEEEEEEcCCCcee
Confidence 99973 221 00 100 011111446889988 554441 34467899999 5556643
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.2e-21 Score=176.85 Aligned_cols=283 Identities=12% Similarity=0.046 Sum_probs=189.2
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeE-EEEeCCCeEEEEeCCCCceeeee
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~ 156 (449)
.+++++++ +++++++.++.|.+||+.+++....+..+....+..++|+|+ ++++ ++...++.|.+||+.+++....+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 34677777 789999999999999999988777664222226889999999 7655 55567899999999999887766
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC------------CeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
...... ......+..++|+|+++++++++.+ +.|.+||+.+++........ .....+.+++|+|
T Consensus 82 ~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVP---GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp ESCCST---TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT
T ss_pred Eccccc---ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC
Confidence 543210 0001226789999999999998865 89999999885543322222 2233688999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCC-----------------------CcEEEEEEcCCCCE--------
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK-----------------------RVVNSAYFSPSGSK-------- 273 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~~v~~~~~~~~~~~-------- 273 (449)
++. +++++ +.|.+||+.+++....+.. +.. .....+++++++..
T Consensus 158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp -TSC-EEEES--SSEEEECTTTCCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred -CCc-EEEcc--CcEEEEeCCCCceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 888 55554 3499999987544222211 110 03445667655421
Q ss_pred ---EEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc-CCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 274 ---ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 274 ---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
+.....++.+++|++.. ....+..+.|+| + |+++. .+ ++.|.+||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~sp~d---------g~~l~---~~--~~~v~~~d 281 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFAD-----------------LTELYFTGLRSPKD---------PNQIY---GV--LNRLAKYD 281 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEE-----------------CSSCEEEEEECSSC---------TTEEE---EE--ESEEEEEE
T ss_pred eeEEEEeccCCcEEeccccc-----------------CCCcceeeEecCCC---------CCEEE---EE--cCeEEEEE
Confidence 11223344555555421 111234678888 6 55554 22 78899999
Q ss_pred CCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 350 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+.+++.+..+..+. .+..+ +|+|++++|++++ ++.|++||+.+++.+..+..+
T Consensus 282 ~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 282 LKQRKLIKAANLDH--TYYCV-AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TTTTEEEEEEECSS--CCCEE-EECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CccCeEEEEEcCCC--Cccce-EECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99999888876543 34566 8999999888877 999999999998876665443
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.3e-22 Score=198.17 Aligned_cols=297 Identities=11% Similarity=0.087 Sum_probs=185.9
Q ss_pred CccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee--eEEEeccc---------------CCceeEE
Q 013086 61 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIH---------------SCIVNNI 123 (449)
Q Consensus 61 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~--~~~~~~~h---------------~~~v~~~ 123 (449)
|.......|..+. +..+.|. |+. +++++.++ | +||+.+++. ...+.... ...|.++
T Consensus 15 ~~~~~~~~~~~~~--~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~ 87 (706)
T 2z3z_A 15 PGGKEFYNFYPEY--VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRT 87 (706)
T ss_dssp ---------------CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEE
T ss_pred CCccccccccccc--CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeE
Confidence 3344444455443 5557888 534 55666677 8 999998877 44332110 1569999
Q ss_pred EEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC---
Q 013086 124 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--- 200 (449)
Q Consensus 124 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--- 200 (449)
+|+|+ +.++++ . ++.|++||+.+++....... .. .+..++|+|+|+.|+++ .++.|++||+.+
T Consensus 88 ~~spd-~~~~~~-~-~~~i~~~d~~~~~~~~l~~~-~~---------~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 88 LDAGR-GLVVLF-T-QGGLVGFDMLARKVTYLFDT-NE---------ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp EETTT-TEEEEE-E-TTEEEEEETTTTEEEEEECC-TT---------CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred EECCC-CeEEEE-E-CCEEEEEECCCCceEEccCC-cc---------cccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 99998 655554 3 59999999998876544322 11 27788999999999985 679999999987
Q ss_pred --CCCccceEEeecC------------CCceEEEEEcCCCCCEEEEEe--------------------------------
Q 013086 201 --NSRSGEAILIHRK------------GSKVVGLHCNPIQPELLLSCG-------------------------------- 234 (449)
Q Consensus 201 --~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~-------------------------------- 234 (449)
++..... ..... ...+.+++|+| ++++|++++
T Consensus 154 ~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 154 GMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 5533111 11111 01157899999 999999987
Q ss_pred -CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 235 -NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 235 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
.+..|++||+.+++.........+...+.+++|+|+|++|++++.++ .|.+||+.+++... .+.... ...
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~~-~~~ 307 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVET-DKH 307 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEEE-CSS
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee---EEEEcc-CCC
Confidence 45789999998654322211114667899999999999999988775 89999998873211 111100 011
Q ss_pred cc-cceeeeecc--CCCCCceEEEcceecccCCCCCCcceEEEECC-CceEEEEEecCccceeceeeecCCCCcEEeecC
Q 013086 309 HL-TPFRAEWDP--KDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 384 (449)
Q Consensus 309 ~~-~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s 384 (449)
.. ....+.|+| + |+++. ++..++.++||++. ++..+..+..+. ..+..+.+|+|+++.|+.++
T Consensus 308 ~~~~~~~~~~sp~~d---------g~~l~---~~~~~g~~~l~~~~~~~~~~~~l~~~~-~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSN---------NQFIW---QSRRDGWNHLYLYDTTGRLIRQVTKGE-WEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp CCCCCSCCEECTTCS---------SEEEE---EECTTSSCEEEEEETTSCEEEECCCSS-SCEEEEEEECTTSSEEEEEE
T ss_pred eECccCCceeecCCC---------CEEEE---EEccCCccEEEEEECCCCEEEecCCCC-eEEEeeeEEcCCCCEEEEEe
Confidence 11 012468888 7 55554 56677889999876 677777776654 44444228999998776644
Q ss_pred --CC----eEEEEcCCCch
Q 013086 385 --SR----SIFIWRPKEKS 397 (449)
Q Consensus 385 --dg----~i~iw~~~~~~ 397 (449)
++ .|+.|++.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC
T ss_pred cCCCCceEEEEEEEcCCCC
Confidence 44 77778877765
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3.7e-21 Score=198.23 Aligned_cols=288 Identities=11% Similarity=0.009 Sum_probs=204.2
Q ss_pred cCccEEEEEEe-CCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC-ceeEEEEeeCCCCeEEEEeCCCeEE-EEeCC
Q 013086 72 HSRRVTCLEFH-PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTVYAASSDGTVS-CTDLE 148 (449)
Q Consensus 72 h~~~V~~~~~~-~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~-iwd~~ 148 (449)
|...|.+++|+ |+| +.|++++ ++.|.+|++.++.... + ..|.. .+..++|+ + ++.|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-cCCCcceEEeeeEc-C-CCeEEEEECCCceEEEEECC
Confidence 45579999999 999 5677766 7899999998766443 3 45777 89999999 8 88899988888888 99998
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+++..... .+. ..+..++|+|++++|++++.++.|++||+.+++... ....+...+.+++|+| +++
T Consensus 368 ~~~~~~l~-~~~---------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~Sp-DG~ 433 (1045)
T 1k32_A 368 TGKAEKFE-ENL---------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISD-NSR 433 (1045)
T ss_dssp TCCEEECC-CCC---------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECT-TSC
T ss_pred CCCceEec-CCc---------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---eccCCCCCccceEECC-CCC
Confidence 77654322 111 238899999999999999999999999998876432 2224555789999999 999
Q ss_pred EEEEEeCCC----------eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 229 LLLSCGNDH----------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 229 ~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+|++++.++ .|++||+.+.+ ......|...+..++|+|+|++|++++.++...+|+...........
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~ 510 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 510 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence 998887644 89999998643 23333677788999999999999999998888888865433211100
Q ss_pred cce-----e-------------------cCCCCc----------c-ccceeeeeccCCCCCceEEEcceecc--------
Q 013086 299 EIV-----H-------------------SHDFNR----------H-LTPFRAEWDPKDPSESLAVIGRYISE-------- 335 (449)
Q Consensus 299 ~~~-----~-------------------~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~g~~~~~-------- 335 (449)
... . ...+.+ + .....+.++|+ |.+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d---------g~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES---------SILIYSVPVHGEFA 581 (1045)
T ss_dssp BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS---------EEEEEECCCCCSHH
T ss_pred ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCC---------CeEEEEecccCccc
Confidence 000 0 000000 0 11123455555 433321
Q ss_pred --cCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCch
Q 013086 336 --NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 336 --~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
..+......|.+||+.+++..... ..+..+ +|+|||+.|++++++.|++|++.+++
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~-~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDL-RLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEE-EECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ccccccCCCceEEEEECCCCcEEEee-----cCcceE-EECCCCCEEEEEcCCcEEEEeCccCc
Confidence 012334568899999988754333 345566 89999999999886689999998876
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.7e-21 Score=172.77 Aligned_cols=247 Identities=11% Similarity=-0.040 Sum_probs=176.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc----CCceeEEEEeeCCCCeEEEEe------------C
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH----SCIVNNIRFNPTNDGTVYAAS------------S 138 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~------------~ 138 (449)
.+..++|+|+|..+++++..++.|.+||+.+++....+..++ ...+..++|+|+ ++++++++ .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCC-CCEEEEEeccccccccccccc
Confidence 478899999996566777788999999999887766554332 226789999999 88888886 5
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++.|.+||+.+++....+.... .+..++|+|++++++++ ++.|.+||+.+++.... ..... ...
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~---~~~~~-~~~ 177 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPR----------QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED---KPIQS-WEA 177 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCS----------SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE---ECSTT-TTT
T ss_pred CceEEEEECCCCcEEEEEeCCC----------CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee---eeccc-cCC
Confidence 7999999999988777665422 26788999999988888 68999999988764321 11111 111
Q ss_pred EEEEcCCCCCEEEEEeC-CC-----------------------eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 219 GLHCNPIQPELLLSCGN-DH-----------------------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~-dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
.+.|+| ++..++..+. ++ .|.+||+.+.+.. .+....+...+.+++|+|++++|
T Consensus 178 ~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 178 ETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEE
T ss_pred CceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEE
Confidence 336788 6665544332 22 4689999875543 22222456678899999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
+++ ++.|.+||+.+++.... .. ....+..+.|+|+ |+++. .++.++.|.+||+.+++
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~----~~-----~~~~~~~~~~s~d---------g~~l~---~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKR----VP-----LPHSYYSVNVSTD---------GSTVW---LGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEE----EE-----CSSCCCEEEECTT---------SCEEE---EESBSSEEEEEETTTCC
T ss_pred EEe--CCeEEEEECCCCcCcce----ec-----CCCceeeEEECCC---------CCEEE---EEcCCCcEEEEECcCCc
Confidence 988 78999999987764221 11 1122347889988 65554 34568999999999999
Q ss_pred EEEEEecCc
Q 013086 355 LVAEVMDPN 363 (449)
Q Consensus 355 ~~~~~~~~~ 363 (449)
.+..+..+.
T Consensus 313 ~~~~~~~~~ 321 (337)
T 1pby_B 313 KKGQVDLPG 321 (337)
T ss_dssp EEEEEECGG
T ss_pred EEEEEEcCC
Confidence 998887654
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=3.4e-21 Score=191.96 Aligned_cols=289 Identities=11% Similarity=0.078 Sum_probs=192.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC---eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
.|.+++|+||| ++|++++. +.|.+||+.++ ... .+ ..|...+..++|+|+ +++|+.++ ++.|++||+.+++
T Consensus 110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTTTE
T ss_pred CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCCCC
Confidence 48899999999 56777765 89999999887 433 23 457788999999999 99998887 5699999999887
Q ss_pred eeeeeecCCCCC-CCCC------cccceeEEEEecCCCEEEEEcCCC---------------------------------
Q 013086 152 ALSLMNVNPNGW-HGPR------TWRMLYGMDINPEKGVVLVADNFG--------------------------------- 191 (449)
Q Consensus 152 ~~~~~~~~~~~~-~~~~------~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------- 191 (449)
............ .+.. ....+..++|+|||++|++++.++
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 654432211100 0000 001147899999999999987655
Q ss_pred eEEEEECCC-CCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-----CCeEEEEEccCCCCCCceeecCCCC---cE
Q 013086 192 FLYLVDART-NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-----DHFARIWDIRRLEAGSSLCDLPHKR---VV 262 (449)
Q Consensus 192 ~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~---~v 262 (449)
.|++||+.+ ++... +.....+...+..++| | +++.|++++. +..|++||+.+++....+.. .... .+
T Consensus 264 ~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~ 339 (741)
T 2ecf_A 264 KLGVISPAEQAQTQW-IDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLH 339 (741)
T ss_dssp EEEEECSSTTCCCEE-ECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCC
T ss_pred EEEEEECCCCCceEE-ecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcC
Confidence 889999987 65421 1111134457899999 9 9998887654 56899999987554332221 1111 45
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCccceecCCCCccccceee-eeccCCCCCceEEEcceecccCCCC
Q 013086 263 NSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRA-EWDPKDPSESLAVIGRYISENYNGA 340 (449)
Q Consensus 263 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (449)
..++|+|+|+++++++.||.++||.+.. +. . . .+..+ ......+ .|+|+ |+.++. ++.
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~---~-~l~~~----~~~v~~~~~~s~d---------g~~l~~--~~~ 399 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A---A-ALTHG----NWSVDELLAVDEK---------AGLAYF--RAG 399 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-E---E-ESCCS----SSCEEEEEEEETT---------TTEEEE--EEC
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-e---e-eeeec----ceEEEeEeEEeCC---------CCEEEE--EEe
Confidence 6899999999999999999888887652 22 1 1 11111 1111234 58888 443321 234
Q ss_pred CCc--ceEEEECCC-ceEEEEEecCccceeceeeecCCCCcEEeecC-C----CeEEEEcCCCc
Q 013086 341 ALH--PIDFIDITT-GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S----RSIFIWRPKEK 396 (449)
Q Consensus 341 ~d~--~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d----g~i~iw~~~~~ 396 (449)
.++ .++||++.. +.....+.. ...+..+ +|+|||++|+... + +.+.+|+...+
T Consensus 400 ~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~-~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 400 IESARESQIYAVPLQGGQPQRLSK--APGMHSA-SFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SSCTTCBEEEEEETTCCCCEECCC--SCSEEEE-EECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCCceEEEEEEEcCCCCeeeccc--CCCceEE-EECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 444 899999864 555555554 2445566 8999999888753 2 67899987543
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=7e-21 Score=184.17 Aligned_cols=269 Identities=13% Similarity=0.009 Sum_probs=182.9
Q ss_pred CccEEEEEEeCCCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC---CCeEEEEeCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLE 148 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~ 148 (449)
..+|++++|+||| +.||+++. ||+++||++.++.... +...+...+..+.|+|+ +++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 5579999999999 56777665 9999999986655433 32333368999999986 57777665 4555666554
Q ss_pred C---CceeeeeecCCCCCCCCCcccceeEEEEecCCCE-EEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 149 T---GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 149 ~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
. +... .+.... .....+|+|+++. +++...++.+.+||+.+++.. ...... ..+++|+|
T Consensus 97 ~~~~g~~~-~l~~~~----------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~~--~~~~~~sp 159 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVK----------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARLP--GFGFVSDI 159 (582)
T ss_dssp TTSTTCCE-ECTTSC----------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEES--SCEEEEEE
T ss_pred ccCCCccc-cccCCC----------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecCC--CceEEECC
Confidence 3 2222 221111 1446688888863 344444555669999876532 122222 17899999
Q ss_pred CCCCEEEEEeCC----CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCCCCCc
Q 013086 225 IQPELLLSCGND----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--RLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 225 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~ 298 (449)
++++|++++.+ +.|++||+.+++. .....+...+..++|+|||++|+++..++ .|++||+.+++..
T Consensus 160 -DG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---- 231 (582)
T 3o4h_A 160 -RGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---- 231 (582)
T ss_dssp -ETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----
T ss_pred -CCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----
Confidence 99999988877 7899999876543 23346788899999999999999888888 8999999887652
Q ss_pred cceecCCCCccccceeee--------eccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceecee
Q 013086 299 EIVHSHDFNRHLTPFRAE--------WDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPV 370 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 370 (449)
....+ ... ...+. |+|+ |.+++ +++.++++++|++ |+.... .. ..+..+
T Consensus 232 -~~~~~--~~~--~~~~~~~~~~~~~~spd---------g~~~~---~~~~~g~~~l~~~--g~~~~~---~~-~~v~~~ 288 (582)
T 3o4h_A 232 -DLELP--SKD--FSSYRPTAITWLGYLPD---------GRLAV---VARREGRSAVFID--GERVEA---PQ-GNHGRV 288 (582)
T ss_dssp -ECCCS--CSH--HHHHCCSEEEEEEECTT---------SCEEE---EEEETTEEEEEET--TEEECC---CS-SEEEEE
T ss_pred -EccCC--CcC--hhhhhhccccceeEcCC---------CcEEE---EEEcCCcEEEEEE--CCeecc---CC-CceEEE
Confidence 11111 111 11234 9998 53333 5677899999999 765542 22 456666
Q ss_pred eecCCCCcEEeecC-C---CeEEEEcCCC
Q 013086 371 NKLHPRDDVLASGS-S---RSIFIWRPKE 395 (449)
Q Consensus 371 ~~~~~~~~~l~s~s-d---g~i~iw~~~~ 395 (449)
+|+ +++++++++ + ..+.+|+..+
T Consensus 289 -~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 289 -VLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -EEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -Eec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 899 999998877 5 5688888764
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.3e-20 Score=194.10 Aligned_cols=294 Identities=11% Similarity=-0.004 Sum_probs=206.1
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC-CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
....+.+|...+.++.|+++ +++++++.++.+.||.+.. +.....+ ..|. .+..++|+|+ ++.|+.+. ++.|.
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD-G~~la~~~-~~~i~ 268 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD-GRRILFSK-GGSIY 268 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES-SSCEEEEE-TTEEE
T ss_pred CeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC-CCEEEEEe-CCEEE
Confidence 34566899999999999987 5788888899999998764 2233333 3344 4677899999 88888875 89999
Q ss_pred EEeCCCCceeeeeecCCCCCC--CCCcccceeEEEEe-cCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC-ceEE
Q 013086 144 CTDLETGLALSLMNVNPNGWH--GPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KVVG 219 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~ 219 (449)
+|++..... ..+..+..... .......+.+++|+ |+++.+++++ ++.+++|++..+... ....+.. .+..
T Consensus 269 ~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~----~~~~~~~~~~~~ 342 (1045)
T 1k32_A 269 IFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL----KVPEPLRIRYVR 342 (1045)
T ss_dssp EECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE----ECSCCSCEEEEE
T ss_pred EecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE----EccCCCcceEEe
Confidence 999954433 23322110000 00011248899999 9999998887 789999998875432 2333444 6889
Q ss_pred EEEcCCCCCEEEEEeCCCeEE-EEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFAR-IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
++|+ ++..|++++.+..+. +||+..... ....++...+..++|+|+|++|++++.++.|++||+.+++...
T Consensus 343 ~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~---~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~--- 414 (1045)
T 1k32_A 343 RGGD--TKVAFIHGTREGDFLGIYDYRTGKA---EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV--- 414 (1045)
T ss_dssp ECSS--SEEEEEEEETTEEEEEEEETTTCCE---EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---
T ss_pred eeEc--CCCeEEEEECCCceEEEEECCCCCc---eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---
Confidence 9998 788888888888888 999875332 2222677889999999999999999999999999998876521
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCC-------CCCCcceEEEECCCceEEEEEecCccceeceee
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN-------GAALHPIDFIDITTGQLVAEVMDPNITTISPVN 371 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 371 (449)
....+ . .....+.|+|+ |++++.... +..++.|++||+.+++ +..+..+. ..+..+
T Consensus 415 -~~~~~--~--~~v~~~~~SpD---------G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~-~~~~~~- 477 (1045)
T 1k32_A 415 -IERSR--E--AMITDFTISDN---------SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN-SHDYAP- 477 (1045)
T ss_dssp -EEECS--S--SCCCCEEECTT---------SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS-SBEEEE-
T ss_pred -eccCC--C--CCccceEECCC---------CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC-cccCCc-
Confidence 11111 1 11236889998 555441111 1234689999999887 55565554 445556
Q ss_pred ecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 372 KLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 372 ~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
+|+|||++|++++ ++...+|+...
T Consensus 478 ~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 478 AFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EECTTSCEEEEEESCCCCCEECSSS
T ss_pred eEcCCCCEEEEEecccCCcCcchhc
Confidence 7999999999988 77778887553
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=6.1e-20 Score=166.02 Aligned_cols=257 Identities=13% Similarity=0.138 Sum_probs=183.2
Q ss_pred cCCceeEEEEeeCCCCeEEEEeC-------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE-E
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASS-------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-A 187 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~ 187 (449)
....+..++|+|+ ++.+++++. ++.|.+||..+++....+..... +..++|+|+++.+++ .
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK----------PFGATINNTTQTLWFGN 107 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC----------CCSEEEETTTTEEEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC----------cceEEECCCCCEEEEEe
Confidence 4566889999999 777777764 56899999999998887765322 678999999996555 5
Q ss_pred cCCCeEEEEECCCCCCccceEEeecCC-------CceEEEEEcCCCCCEEEEEe--CCCeEEEEEccCCCCCCceeecC-
Q 013086 188 DNFGFLYLVDARTNSRSGEAILIHRKG-------SKVVGLHCNPIQPELLLSCG--NDHFARIWDIRRLEAGSSLCDLP- 257 (449)
Q Consensus 188 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~- 257 (449)
..++.|.+||+.+++..... ...... ..+.+++|+| +++.+++++ .++.|.+||+.+.+. ...+.
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~---~~~~~~ 182 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL---KTAIQN 182 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE---EEEECC
T ss_pred cCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce---EEEecC
Confidence 56799999999987754322 221111 1268899999 888766665 478999999986544 33333
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccC
Q 013086 258 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY 337 (449)
Q Consensus 258 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (449)
+...+.+++|+|++++|++++.++.|.+||+.+++.... ...........+..+.|+|+ |+++..
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~s~d---------g~~l~~-- 247 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR----KKLLDDGKEHFFINISLDTA---------RQRAFI-- 247 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE----EECCCSSSCCCEEEEEEETT---------TTEEEE--
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE----EEcCCCCCCcccceEEECCC---------CCEEEE--
Confidence 455588899999999999999999999999988765321 11111111112345788888 443321
Q ss_pred CCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe-ecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 338 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA-SGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~-s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
+...++.|.+||..+++.+..+..+.. ..+ +|+|++++++ +.. ++.|.+||+.+++.+..+.....
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~-~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPES---LAV-LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC---CCE-EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCC---ceE-EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence 234568999999999999888876542 345 7999998554 454 89999999999987776655443
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.2e-19 Score=162.92 Aligned_cols=283 Identities=11% Similarity=0.080 Sum_probs=178.8
Q ss_pred EEEEEc----CCCcEEEEeCc--CCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC----CeEEEEeCCC--Cceeee
Q 013086 88 ILLSGD----KKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTVSCTDLET--GLALSL 155 (449)
Q Consensus 88 ~l~t~~----~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~--~~~~~~ 155 (449)
+++.|+ .++.|.+|.+. ++........ +...+..++|+|+ +++|++++.+ +.|.+|++.. ++....
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 455553 45689999774 3443333322 7778899999999 8889988875 7999998875 443322
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCCccceEEe--ecC---------CCceEEEEEc
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILI--HRK---------GSKVVGLHCN 223 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~v~~~~~~ 223 (449)
....... .....+++ +++++++++ .++.|.+|++............ +.. ...+.+++|+
T Consensus 93 ~~~~~~~-------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 93 NTQKTMG-------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEECSS-------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred eEeccCC-------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence 2221111 12566777 777776665 6789999999765433222111 111 1235889999
Q ss_pred CCCCCEEEEEe-CCCeEEEEEccCCCC------CC-----ceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 224 PIQPELLLSCG-NDHFARIWDIRRLEA------GS-----SLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 224 ~~~~~~l~~~~-~dg~i~iwd~~~~~~------~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
| +++++++++ .++.|.+|++..... .. ..........+..++|+|+|++|++++ .++.|.+|++.+
T Consensus 164 p-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 164 P-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp T-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred C-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 9 888665544 588999999875332 10 111234556678999999999887777 589999999986
Q ss_pred CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCC-CcceEEEECC--Cce--EEEEEecCccc
Q 013086 291 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-LHPIDFIDIT--TGQ--LVAEVMDPNIT 365 (449)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-d~~i~iwd~~--~~~--~~~~~~~~~~~ 365 (449)
+.+... ... . ........+..+.|+|+ |+++.. +... ++.|.+|++. +++ .+..+.. ..
T Consensus 243 g~~~~~-~~~-~-~~~~~~~~~~~i~~spd---------g~~l~v--~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~ 306 (361)
T 3scy_A 243 GMLDEI-QTV-A-ADTVNAQGSGDIHLSPD---------GKYLYA--SNRLKADGVAIFKVDETNGTLTKVGYQLT--GI 306 (361)
T ss_dssp TEEEEE-EEE-E-SCSSCCCCEEEEEECTT---------SSEEEE--EECSSSCEEEEEEECTTTCCEEEEEEEEC--SS
T ss_pred CceEEe-EEE-e-cCCCCCCCcccEEECCC---------CCEEEE--ECCCCCCEEEEEEEcCCCCcEEEeeEecC--CC
Confidence 643110 000 0 00111122347889998 665531 2333 5889999985 455 3444443 24
Q ss_pred eeceeeecCCCCcEEeecC--CCeEEEE--cCCCchhh
Q 013086 366 TISPVNKLHPRDDVLASGS--SRSIFIW--RPKEKSEL 399 (449)
Q Consensus 366 ~v~~v~~~~~~~~~l~s~s--dg~i~iw--~~~~~~~~ 399 (449)
.+..+ +|+|+|++|++++ ++.|.+| |..+|+..
T Consensus 307 ~~~~~-~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 307 HPRNF-IITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CCCEE-EECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCceE-EECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 45566 8999999888866 6999996 55566643
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.4e-19 Score=163.41 Aligned_cols=269 Identities=12% Similarity=0.126 Sum_probs=167.8
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcC--CCcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCCCCeEEEEe-CCCeEEEE
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDK--KGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCT 145 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~--d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw 145 (449)
..+...+..++|+|+| ++++++.. ++.|.+|++.++...... ...+...+..++|+|+ +++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEE
Confidence 3455678889999999 55555432 689999999766532221 1347778999999999 88888877 68999999
Q ss_pred eCCC-Cce--eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE-eecCCCceEEEE
Q 013086 146 DLET-GLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLH 221 (449)
Q Consensus 146 d~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~ 221 (449)
++.. +.. +..+...............+.+++|+|+++++++...++.|.+|++........... .......+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 332 222221111100011123478899999999666677788999999983222211111 112233678899
Q ss_pred EcCCCCCEEEE-EeCCCeEEEEEccC--CCCCC--ceeecCC----CCcEEEEEEcCCCCEEE-EeeCCCcEEEEeCCCC
Q 013086 222 CNPIQPELLLS-CGNDHFARIWDIRR--LEAGS--SLCDLPH----KRVVNSAYFSPSGSKIL-TTSQDNRLRIWDSIFG 291 (449)
Q Consensus 222 ~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~~~--~~~~~~~----~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~ 291 (449)
|+| +++++++ ...++.|.+|++.. +.... .+..... ...+..++|+|+|++|+ +...++.|.+|++...
T Consensus 194 ~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 194 FSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999 8885555 56788999999874 21100 1111111 14588999999999875 4556899999998632
Q ss_pred CCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE--ECCCceEEE
Q 013086 292 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQLVA 357 (449)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw--d~~~~~~~~ 357 (449)
... ........ ....+..++|+|+ |+++.. ++..++.|.+| |..+|++..
T Consensus 273 g~~---~~~~~~~~--~~~~~~~~~~spd---------g~~l~v--~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 273 GHL---TLIQQIST--EGDFPRDFDLDPT---------EAFVVV--VNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp GCE---EEEEEEEC--SSSCCCEEEECTT---------SSEEEE--EETTTTEEEEEEECTTTCCEEE
T ss_pred CcE---EEeEEEec--CCCCcCeEEECCC---------CCEEEE--EEcCCCcEEEEEEeCCCCeEEe
Confidence 110 01100000 0112347889998 655441 23455889999 556777653
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=6.1e-20 Score=168.37 Aligned_cols=297 Identities=11% Similarity=0.027 Sum_probs=187.9
Q ss_pred ccceeeeccCccEEE-----EEEeCCCCcEEEEEcC-CC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEE
Q 013086 64 VNCAVIRYHSRRVTC-----LEFHPTNNHILLSGDK-KG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~-----~~~~~~~~~~l~t~~~-d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 135 (449)
..+..+..|...... .+|+|||. .|+.++. ++ .|.+||+.++...... .++...+..+.|+|+ ++.|+.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd-g~~l~~ 97 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD-DDALFY 97 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT-SSEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC-CCEEEE
Confidence 345667777766666 88999995 5555554 66 4888898887665544 556666667889999 999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeE--EEEecCCCEEEEE----------------------cCCC
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG--MDINPEKGVVLVA----------------------DNFG 191 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~----------------------~~dg 191 (449)
++.++.|++||+.+++.......+.. .+.. ..+++++.+++.. ..+.
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~~~~~---------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQVPAE---------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTT---------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred EeCCCeEEEEECCCCcceeeeechhh---------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99999999999999887666554322 1322 3458899888743 2447
Q ss_pred eEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC------CeEEEEEccCCCCCCceeecCCC--CcEE
Q 013086 192 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHK--RVVN 263 (449)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~v~ 263 (449)
.|++||+.+++.. ........+..++|+|.++..|+....+ ..|.++|+..... .....+. ..+.
T Consensus 169 ~l~~~d~~~g~~~----~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 169 RLMRVDLKTGEST----VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCT 241 (388)
T ss_dssp EEEEEETTTCCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEE
T ss_pred eEEEEECCCCceE----EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccc
Confidence 8999999987532 2223334689999999556666666543 3788888764322 1112233 3578
Q ss_pred EEEEcCCCCEEEEeeC-CC----cEEEEeCCCCCCCCCCccceecCCCCcc-ccceeeeeccCCCCCceEEEcceecccC
Q 013086 264 SAYFSPSGSKILTTSQ-DN----RLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENY 337 (449)
Q Consensus 264 ~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (449)
.+.|+|+|+.|+..+. ++ .|++||+.+++... +......... ...-...|+|+ |+.++...
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~~~~~~~~~~~~~~~spd---------g~~l~~~~ 308 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ----LTSMPACSHLMSNYDGSLMVGD---------GSDAPVDV 308 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE----EEEECCEEEEEECTTSSEEEEE---------ECCC----
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE----EEcCCCceeeeecCCCCeEccC---------CCcceeEe
Confidence 8999999998766543 22 39999998876411 1110000000 00012256666 66555221
Q ss_pred ------CCCCCcceEEEECCCceEEEEEecCccc----------eeceeeecCCCCcEEeecC--CCeEEEEcCC
Q 013086 338 ------NGAALHPIDFIDITTGQLVAEVMDPNIT----------TISPVNKLHPRDDVLASGS--SRSIFIWRPK 394 (449)
Q Consensus 338 ------~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~v~~v~~~~~~~~~l~s~s--dg~i~iw~~~ 394 (449)
+...+..|++||+.+++.. .+..+... .+..+ +|+|||+.|+.++ +|...||.+.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHP-SFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp --------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCc-cCCCCCCEEEEEecCCCceeEEEEE
Confidence 1255678999999988764 34333310 24455 8999999888755 6766666543
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.6e-20 Score=163.91 Aligned_cols=208 Identities=16% Similarity=0.106 Sum_probs=150.8
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC-CeeeEEEeccc-CCceeEEEEeeCCCCeEEEEeC--CCeE
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASS--DGTV 142 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~--dg~v 142 (449)
..+..|...|.+++|+|+| ++|++++ ++.|.+||+.+ +...... ..+ ...+.+++|+|+ +++|++++. ++..
T Consensus 35 ~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPD-GALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTT-SSEEEEEECTTTSSC
T ss_pred eeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCC-CCEEEEEEeCCCCcc
Confidence 4567789999999999999 5777776 78999999998 6655444 344 478899999999 889999883 3444
Q ss_pred EEE--eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEE-EEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 143 SCT--DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 143 ~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
.|| ++.++.. ..+... ..+..++|+|+++.|+ ++..++.+.+|++...... ......+...+.+
T Consensus 111 ~l~~~~~~~~~~-~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 111 AIYLLPSTGGTP-RLMTKN----------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGEGRNDG 177 (297)
T ss_dssp EEEEEETTCCCC-EECCSS----------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--EEECCCSSSCEEE
T ss_pred eEEEEECCCCce-EEeecC----------CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--ceEcccCCCcccc
Confidence 554 5555442 222211 1278899999999887 6778898999986432211 2233444557999
Q ss_pred EEEcCCCCCEEEEEe-CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-----------CcEEEEe
Q 013086 220 LHCNPIQPELLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----------NRLRIWD 287 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~vwd 287 (449)
++|+| ++..|++++ .++.+.+|++..... .......+...+.++.|+|++++|++++.+ +.|.+||
T Consensus 178 ~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 178 PDYSP-DGRWIYFNSSRTGQMQIWRVRVDGS-SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEECT-TSSEEEEEECTTSSCEEEEEETTSS-CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred ceECC-CCCEEEEEecCCCCccEEEECCCCC-CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 99999 888777665 589999998863221 122223567789999999999999988876 5699999
Q ss_pred CCCCCC
Q 013086 288 SIFGNL 293 (449)
Q Consensus 288 ~~~~~~ 293 (449)
+.+++.
T Consensus 256 ~~~~~~ 261 (297)
T 2ojh_A 256 MDGGNV 261 (297)
T ss_dssp TTSCSC
T ss_pred cCCCCc
Confidence 987754
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=6.8e-20 Score=182.09 Aligned_cols=295 Identities=10% Similarity=0.010 Sum_probs=185.2
Q ss_pred cccceeeeccCc---cEEEEEEeCCCCcEEEEEcCC---------CcEEEEeCcCCeeeEEE-ecccCCceeEEEEeeCC
Q 013086 63 QVNCAVIRYHSR---RVTCLEFHPTNNHILLSGDKK---------GQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTN 129 (449)
Q Consensus 63 ~~~~~~~~~h~~---~V~~~~~~~~~~~~l~t~~~d---------~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~ 129 (449)
......+.+|.. .|.+++||||| ++|++++.+ +.|.+||+.++...... ..+|...+..++|+|+
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd- 124 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK- 124 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS-
T ss_pred CcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC-
Confidence 334456666665 49999999999 577777654 78889999987652211 1234556899999999
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCC--CCC-------CcccceeEEEEecCCCEEEEEcCCC---------
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW--HGP-------RTWRMLYGMDINPEKGVVLVADNFG--------- 191 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg--------- 191 (449)
++.|+.++. +.|++||+.+++............ .+. .....+.+++|+|||+.|++++.++
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 889998885 799999999887665443221110 000 0001247899999999999886442
Q ss_pred -------------------------eEEEEECCCCCCccceEEee----cCCCceEEEEEcCCCCCEEEEEeC----CCe
Q 013086 192 -------------------------FLYLVDARTNSRSGEAILIH----RKGSKVVGLHCNPIQPELLLSCGN----DHF 238 (449)
Q Consensus 192 -------------------------~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~----dg~ 238 (449)
.|++||+.++.....+ ..+ .+...+..++|+| ++++|++... +..
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM-MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSI 281 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC-CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe-eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEE
Confidence 7999999887642211 111 1234689999999 9988877653 357
Q ss_pred EEEEEccCCCCCCceeecCCCCcE----EEEEEcCCCCEEEEe--eCCC------cEEEEe-CCCCCC--CCCCccceec
Q 013086 239 ARIWDIRRLEAGSSLCDLPHKRVV----NSAYFSPSGSKILTT--SQDN------RLRIWD-SIFGNL--DSPSREIVHS 303 (449)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~--~~dg------~i~vwd-~~~~~~--~~~~~~~~~~ 303 (449)
|++||+.+++....+. ..+...+ ..++|+|+|+.|+.. ..++ .|.+|| ..++.. ... + ..
T Consensus 282 i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---l-~~ 356 (723)
T 1xfd_A 282 LTLCDATTGVCTKKHE-DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS---I-TS 356 (723)
T ss_dssp EEEEETTTCCEEEEEE-EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB---S-CC
T ss_pred EEEEeCCCCcceEEEE-eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE---e-ec
Confidence 9999998754422221 1233333 378999999977754 4566 577777 344330 111 1 11
Q ss_pred CCCCccccce-eeeeccCCCCCceEEEcceecccCCCCCC--cceEEEECCCce--EEEEEecC--ccceeceeeecCCC
Q 013086 304 HDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAAL--HPIDFIDITTGQ--LVAEVMDP--NITTISPVNKLHPR 376 (449)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~d--~~i~iwd~~~~~--~~~~~~~~--~~~~v~~v~~~~~~ 376 (449)
. ..... .+.|+|+ |++++. .+..+ +.+++|++.... ....+... +...+..+ +|+|+
T Consensus 357 ~----~~~~~~~~~~spd---------g~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~spd 420 (723)
T 1xfd_A 357 G----DWDVTKILAYDEK---------GNKIYF--LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA-SFSHS 420 (723)
T ss_dssp S----SSCEEEEEEEETT---------TTEEEE--EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE-EECTT
T ss_pred C----CeEEEeeeEEcCC---------CCEEEE--EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEE-EECCC
Confidence 1 11111 2579998 555431 23334 789999986432 23333321 22445566 89999
Q ss_pred CcEEeec
Q 013086 377 DDVLASG 383 (449)
Q Consensus 377 ~~~l~s~ 383 (449)
|++|+..
T Consensus 421 g~~l~~~ 427 (723)
T 1xfd_A 421 MDFFLLK 427 (723)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988864
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=5.2e-19 Score=160.57 Aligned_cols=284 Identities=12% Similarity=0.089 Sum_probs=175.8
Q ss_pred EEEEcCC--CcEEEEeCc--CCeeeEEEe--cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC-CCceeeeeecCCC
Q 013086 89 LLSGDKK--GQVGVWDFY--KVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNPN 161 (449)
Q Consensus 89 l~t~~~d--~~i~vwd~~--~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~ 161 (449)
|+.|+.. +.|.+|++. ++....... ......+..++|+|+ +++|++++.+ .|.+|++. +++..........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 4555543 468877653 444322211 123457889999999 8889888887 99999997 7766543332111
Q ss_pred CCCCCCcccceeEEEEecCCCE--EEEEc-------------CCCeEEEEECCC-CCCccceEEe--ecCCCceEEEEEc
Q 013086 162 GWHGPRTWRMLYGMDINPEKGV--VLVAD-------------NFGFLYLVDART-NSRSGEAILI--HRKGSKVVGLHCN 223 (449)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~--~~~~~~v~~~~~~ 223 (449)
. .+..++|+|++++ ++++. .+|.+.+|++.. +... ..... +.....+.+++|+
T Consensus 83 g--------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 83 G--------HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp S--------SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEEC
T ss_pred C--------CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEEC
Confidence 1 1456889999994 44543 688999999974 3322 11121 1234579999999
Q ss_pred CCCCCEEEEEeC-CCeEEEEEcc-CCCCCCceeec---CCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCCCCC
Q 013086 224 PIQPELLLSCGN-DHFARIWDIR-RLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSI--FGNLDS 295 (449)
Q Consensus 224 ~~~~~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~ 295 (449)
| ++++|+++.. ++.|++|++. +++.. .+... .+...+..++|+|+|++|++++. ++.|.+|++. ++++..
T Consensus 154 p-dG~~l~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 154 P-TETYLYSADLTANKLWTHRKLASGEVE-LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp T-TSSEEEEEETTTTEEEEEEECTTSCEE-EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred C-CCCEEEEEcCCCCEEEEEEECCCCCEE-EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 9 8988877653 6799999997 43321 11111 13566899999999999988775 7899999875 444210
Q ss_pred CCccce-ecCCCCccc-------cceeee-eccCCCCCceEEEcceecccCCCC---CCcceEEEECC-CceEEEE---E
Q 013086 296 PSREIV-HSHDFNRHL-------TPFRAE-WDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDIT-TGQLVAE---V 359 (449)
Q Consensus 296 ~~~~~~-~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~---~d~~i~iwd~~-~~~~~~~---~ 359 (449)
....+. ....+.++. .+..++ |+|+ |+++.....+. ..+.|.+|++. +++.... +
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd---------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFS---------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT---------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCC---------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 000000 001111111 245688 9998 55443100011 12389999996 6765432 2
Q ss_pred ecCccceeceeeecCC---CCcEEeecC-C-CeEEEEcCCCc
Q 013086 360 MDPNITTISPVNKLHP---RDDVLASGS-S-RSIFIWRPKEK 396 (449)
Q Consensus 360 ~~~~~~~v~~v~~~~~---~~~~l~s~s-d-g~i~iw~~~~~ 396 (449)
..+. .....+ +|+| +|++|++++ + +.|.+|+++..
T Consensus 303 ~~~~-~~~~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 303 PTPT-SGGHSN-AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSS-CCTTCC-CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCC-CCcccc-eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2222 344556 7999 899999887 4 99999998765
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.9e-20 Score=181.86 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=183.8
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCC---ceeEEEEeeCCCCeEEEEeC---------CCeEEEE
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASS---------DGTVSCT 145 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~---------dg~v~iw 145 (449)
+++|+|+| ++++++ .|+.|++||+.++.....+ ..|.. .+.+++|+|+ +++|++++. ++.|++|
T Consensus 20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEE
Confidence 67999999 666655 5899999999998876655 34433 3899999999 999988876 6899999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC----------
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS---------- 215 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------- 215 (449)
|+.+++.+....+. ..+..++|+|||+.|+.+. ++.|++||+.++...... ...+..
T Consensus 96 d~~~g~~~~~~~l~----------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~--~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 96 DLSNGEFVRGNELP----------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT--FNGRENKIFNGIPDWV 162 (719)
T ss_dssp ETTTTEECCSSCCC----------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC--CCCBTTTEEESSCCHH
T ss_pred ECCCCccccceecC----------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe--cCCCcCCeEcccccce
Confidence 99998763211111 1278899999999999886 689999999877643111 111111
Q ss_pred -------ceEEEEEcCCCCCEEEEEeCCC----------------------------------eEEEEEccCCCCC--Cc
Q 013086 216 -------KVVGLHCNPIQPELLLSCGNDH----------------------------------FARIWDIRRLEAG--SS 252 (449)
Q Consensus 216 -------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~ 252 (449)
...+++|+| +++.|++++.|. .|++||+.+.+.. ..
T Consensus 163 ~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 125899999 999999987652 7889999765431 01
Q ss_pred ee----ecCCCCcEEEEEEcCCCCEEEEeeCC----CcEEEEe----CCCCCCCCCCccceecCCCCcccc---ceeeee
Q 013086 253 LC----DLPHKRVVNSAYFSPSGSKILTTSQD----NRLRIWD----SIFGNLDSPSREIVHSHDFNRHLT---PFRAEW 317 (449)
Q Consensus 253 ~~----~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 317 (449)
+. ..+|...+.+++|+||++++++.... ..|.+|| +.+++........... ...... .....|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVF 319 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEE
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc--CCceEccccCCccEE
Confidence 10 11477789999999998777764432 2488899 7777653211000001 111111 114679
Q ss_pred ccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-C-----CeEEEE
Q 013086 318 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S-----RSIFIW 391 (449)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d-----g~i~iw 391 (449)
+|+.....+... .......|.+||+.+++ ...+..+. ..+..+ .++ +++.|+..+ + +.+++|
T Consensus 320 spdg~~l~~~~~--------~~~g~~~l~~~~~~~~~-~~~lt~~~-~~v~~~-~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 320 SYDAISYYKIFS--------DKDGYKHIHYIKDTVEN-AIQITSGK-WEAINI-FRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp CTTSSCEEEEEE--------CTTSCEEEEEESSCSTT-CEECSCSS-SCEEEE-EEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred CCCCCeEEEEEE--------ccCCceEEEEEECCCCc-eEecccCc-eEEEEE-EEE-eCCEEEEEEecCCCCCceEEEE
Confidence 998321111111 12234578888988776 33444433 334455 344 666666544 5 778888
Q ss_pred cCCC
Q 013086 392 RPKE 395 (449)
Q Consensus 392 ~~~~ 395 (449)
.+..
T Consensus 388 ~~~~ 391 (719)
T 1z68_A 388 RISI 391 (719)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7653
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.9e-18 Score=154.73 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=170.6
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCC----CcEEEEeCcC--CeeeEE-EecccCCceeEEEEeeCCCCeEEEEe-CCCeEE
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKK----GQVGVWDFYK--VSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVS 143 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d----~~i~vwd~~~--~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~ 143 (449)
|......++|+|+| ++|++++.+ +.|.+|++.. +..... ....+......+++ + +++|++++ .++.|.
T Consensus 48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEECCCCEEE
Confidence 67778889999999 567777664 7999999876 332221 11234556777777 5 67666665 588999
Q ss_pred EEeCCCCceeeeee----cCCCC-CCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECCCCCC------ccc----e
Q 013086 144 CTDLETGLALSLMN----VNPNG-WHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSR------SGE----A 207 (449)
Q Consensus 144 iwd~~~~~~~~~~~----~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~~~----~ 207 (449)
+|++.....+..+. ..... .........+.+++|+|+++++++++ .++.|.+|++..... +.. .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99997543332211 11000 00011122368899999999766654 588999999876542 111 1
Q ss_pred EEeecCCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEccCCCCCCc--eeec-CCCCcEEEEEEcCCCCEEEEeeCC--C
Q 013086 208 ILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEAGSS--LCDL-PHKRVVNSAYFSPSGSKILTTSQD--N 281 (449)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--g 281 (449)
.........+..++|+| +++++++++ .++.|.+|++.++..... +... .+...+..++|+|+|++|+++..+ +
T Consensus 204 ~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11223344678999999 888777766 689999999975432111 1111 233456899999999998776654 8
Q ss_pred cEEEEeCC--CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE--ECCCceEEE
Q 013086 282 RLRIWDSI--FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQLVA 357 (449)
Q Consensus 282 ~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw--d~~~~~~~~ 357 (449)
.|.+|++. +++.. ....... ...+..+.|+|+ |+++.. ++..++.|.+| |..+|++..
T Consensus 283 ~i~v~~~~~~~g~~~----~~~~~~~---g~~~~~~~~spd---------g~~l~~--~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 283 GVAIFKVDETNGTLT----KVGYQLT---GIHPRNFIITPN---------GKYLLV--ACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEEECTTTCCEE----EEEEEEC---SSCCCEEEECTT---------SCEEEE--EETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEEEcCCCCcEE----EeeEecC---CCCCceEEECCC---------CCEEEE--EECCCCCEEEEEEECCCCcEee
Confidence 99999996 33321 0110011 122346889998 665541 23356889995 555777654
Q ss_pred EEecCccceeceeeec
Q 013086 358 EVMDPNITTISPVNKL 373 (449)
Q Consensus 358 ~~~~~~~~~v~~v~~~ 373 (449)
.....+...+.++ .|
T Consensus 345 ~~~~~~~~~p~~v-~~ 359 (361)
T 3scy_A 345 IKKDIKVDKPVCL-KF 359 (361)
T ss_dssp CSCCEECSSEEEE-EE
T ss_pred cceeeeCCCCeEE-EE
Confidence 4322233344554 44
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=7.5e-20 Score=169.29 Aligned_cols=206 Identities=10% Similarity=0.051 Sum_probs=146.7
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----------eeEE----EecccCCceeEEEEeeCCCCeEE----
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----------EKIV----YGNIHSCIVNNIRFNPTNDGTVY---- 134 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----------~~~~----~~~~h~~~v~~~~~~~~~~~~l~---- 134 (449)
...++.+++++++ .++++++.++ ++||+..... .... ....+...|++++|+|+ +++|+
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEE
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEe
Confidence 3468899999998 5788888887 8998753210 0110 01235678999999999 88888
Q ss_pred EEeCCCeEEEEeCCCC--------ceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCcc
Q 013086 135 AASSDGTVSCTDLETG--------LALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSG 205 (449)
Q Consensus 135 s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 205 (449)
+++.|+.|++||+.++ +.+..+... ..+...|.+++|+|+ +.+|++++.||.|++||++++...
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~- 185 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL------KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV- 185 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC------CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeecc------CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-
Confidence 7888999999998764 111112110 112235999999998 789999999999999999987432
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-----CCCCcEEEEEEcCCCCEEEEee-C
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-----PHKRVVNSAYFSPSGSKILTTS-Q 279 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~-~ 279 (449)
.....+...|.+++|+| ++.+|++|+.||.|++||++ +.....+... .|...|.++.|++++.++++.+ .
T Consensus 186 --~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 186 --CATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp --EEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred --eeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 22333455899999999 89999999999999999997 2221111111 1334899999999888775533 3
Q ss_pred CC------cEEEEeCCCCC
Q 013086 280 DN------RLRIWDSIFGN 292 (449)
Q Consensus 280 dg------~i~vwd~~~~~ 292 (449)
|| .+++|+++..+
T Consensus 262 dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp TCCSSSCCEEEEEECCCTT
T ss_pred CCccCCCCceEEEEeccCC
Confidence 43 38999998653
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=3.8e-19 Score=164.58 Aligned_cols=205 Identities=11% Similarity=0.063 Sum_probs=141.9
Q ss_pred ccCccEEEEEEeCCCCcEEE----EEcCCCcEEEEeCcCC--------eee--EEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 71 YHSRRVTCLEFHPTNNHILL----SGDKKGQVGVWDFYKV--------SEK--IVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~----t~~~d~~i~vwd~~~~--------~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
.|...|++++|+|+| ++|+ +|+.|+.|+|||+.+. ... .....+|...|.+++|+|+.+.+|+++
T Consensus 90 ~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 467789999999999 5677 8899999999998764 111 233367999999999999867899999
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec----
Q 013086 137 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR---- 212 (449)
Q Consensus 137 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---- 212 (449)
+.||+|++||++++........+. ..+.+++|+|++++|++|+.||.|++||++ +.... ....+.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~---------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~-~~~~~~~~~~ 237 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPST---------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK-VIPCPPFYES 237 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGG---------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE-EECCCTTCCT
T ss_pred ECCCeEEEEEcCCCcceeeccCCC---------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc-cccCCcccCC
Confidence 999999999999886544332221 249999999999999999999999999998 32221 111111
Q ss_pred -CCCceEEEEEcCCCCCEEEE-EeCCC------eEEEEEccCCCCC--Cceeec--------CCCCcEEEEEEcCCCCEE
Q 013086 213 -KGSKVVGLHCNPIQPELLLS-CGNDH------FARIWDIRRLEAG--SSLCDL--------PHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 213 -~~~~v~~~~~~~~~~~~l~~-~~~dg------~i~iwd~~~~~~~--~~~~~~--------~~~~~v~~~~~~~~~~~l 274 (449)
+...+.+++|++ +..++++ ...+| .+++|+++..... ..+..+ ....+-..+.+.++.+++
T Consensus 238 ~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~ 316 (434)
T 2oit_A 238 DHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV 316 (434)
T ss_dssp TSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEE
T ss_pred CCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEE
Confidence 123789999998 6666644 33443 3899999864321 111111 112222334444677777
Q ss_pred EEeeC-CCcEEEEeC
Q 013086 275 LTTSQ-DNRLRIWDS 288 (449)
Q Consensus 275 ~~~~~-dg~i~vwd~ 288 (449)
++++. .+.|.|...
T Consensus 317 ~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 317 LAASAASTEVSILAR 331 (434)
T ss_dssp EEEETTCSBCEEEEE
T ss_pred EEecCCCCceeEEEe
Confidence 66654 555777764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.6e-18 Score=167.72 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=159.0
Q ss_pred cCCceeEEEEeeCCCCeEEEEeC-CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC---CC
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FG 191 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg 191 (449)
+..+|.+++|+|+ ++.|++++. ||++.||++.+++....... .. ..+..++|+|+ +.+++++. +.
T Consensus 20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~~lt~~-~~--------~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETVKLNRE-PI--------NSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEEECCSS-CC--------SEECEECTTCS-EEEEEEECSTTSC
T ss_pred hccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcEeeecc-cc--------cccccccCCCC-eEEEEeccCCCCc
Confidence 4568999999999 899998877 99999999976665433221 11 13888999999 77776664 44
Q ss_pred eEEEEECCC--CCCccceEEeecCCCceEEEEEcCCCCC-EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEc
Q 013086 192 FLYLVDART--NSRSGEAILIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 268 (449)
Q Consensus 192 ~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (449)
...+|.+.. ..... ..... ..+...+|+| +++ .+++.+.++.+.+||+.+++..... .+.. .+++|+
T Consensus 89 ~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---~~~~--~~~~~s 158 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELA---RLPG--FGFVSD 158 (582)
T ss_dssp CEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEE---EESS--CEEEEE
T ss_pred ceEEEEEeccCCCccc---cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEee---cCCC--ceEEEC
Confidence 455554433 22111 11111 1344667888 554 3444444555669999765432222 2222 789999
Q ss_pred CCCCEEEEeeCC----CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc-
Q 013086 269 PSGSKILTTSQD----NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH- 343 (449)
Q Consensus 269 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~- 343 (449)
|||++|++++.+ +.|++||+.+++... +..+ . .......|+|+ |++++ ++..++
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-----l~~~--~--~~~~~~~~SpD---------G~~l~---~~~~~~~ 217 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-----FDSG--E--GSFSSASISPG---------MKVTA---GLETARE 217 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCEE-----ECCS--S--CEEEEEEECTT---------SCEEE---EEECSSC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-----eecC--C--CccccceECCC---------CCEEE---EccCCCe
Confidence 999999988877 789999998877521 1111 1 11247899999 66665 344556
Q ss_pred -ceEEEECCCceEEEEEecCccceeceeee--------cCCCCcEEeecC-CCeEEEEcCCCchhh
Q 013086 344 -PIDFIDITTGQLVAEVMDPNITTISPVNK--------LHPRDDVLASGS-SRSIFIWRPKEKSEL 399 (449)
Q Consensus 344 -~i~iwd~~~~~~~~~~~~~~~~~v~~v~~--------~~~~~~~l~s~s-dg~i~iw~~~~~~~~ 399 (449)
.|++||+.+++.. .+..+. ..+..+ + |+|||.++++++ ||.+++|++ |+..
T Consensus 218 ~~i~~~d~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-DLELPS-KDFSSY-RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEEEECTTTCCEE-ECCCSC-SHHHHH-CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred eEEEEEcCCCCcEE-EccCCC-cChhhh-hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 8999999999887 554443 455555 6 999998888888 999999999 5544
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.2e-17 Score=165.87 Aligned_cols=289 Identities=10% Similarity=0.033 Sum_probs=180.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc-----eeEEEEeeCCCCeEEEEeCC---------C
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-----VNNIRFNPTNDGTVYAASSD---------G 140 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~s~~~d---------g 140 (449)
...+++|+|+| ++++++ |+.|++||+.++.....+ .+|... ...+.|+|+ +++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccce
Confidence 35578999999 688886 899999999998876655 455432 245889999 9998888875 5
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC------
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG------ 214 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------ 214 (449)
.+.+||+.+++.... ..+. ..+...+|||||+.|+.+. ++.|++|++.++..... ......
T Consensus 93 ~~~~~d~~~~~~~~l-~~~~---------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l--t~~g~~~~~~~g 159 (740)
T 4a5s_A 93 SYDIYDLNKRQLITE-ERIP---------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI--TWTGKEDIIYNG 159 (740)
T ss_dssp EEEEEETTTTEECCS-SCCC---------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CSCCBTTTEEES
T ss_pred EEEEEECCCCcEEEc-ccCC---------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE--cCCCCccceecC
Confidence 677999999876532 2111 1388999999999998884 68999999987653311 111111
Q ss_pred -----------CceEEEEEcCCCCCEEEEEeCCC------------------------------------eEEEEEccC-
Q 013086 215 -----------SKVVGLHCNPIQPELLLSCGNDH------------------------------------FARIWDIRR- 246 (449)
Q Consensus 215 -----------~~v~~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~- 246 (449)
.....+.|+| +++.|+.++.|. .|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred cccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 1123589999 999988875321 578889876
Q ss_pred --CCCCCceeec------CCCCcEEEEEEcCCCCEEEEeeC----CCcEEEEeCCCCC----CCCCCccceecCCCCccc
Q 013086 247 --LEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQ----DNRLRIWDSIFGN----LDSPSREIVHSHDFNRHL 310 (449)
Q Consensus 247 --~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~ 310 (449)
++........ ++...+..++|+|||+.++.... +..|.+||+.+++ +..... +. ........
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~-l~-~~~~~~~v 316 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ-HI-EMSTTGWV 316 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-EE-EECSSSCS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-ee-eccCCceE
Confidence 4321222222 26778999999999997665533 3479999999887 221111 00 01111111
Q ss_pred c---ceeeeeccCCCCCceEEEcceec-ccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-C
Q 013086 311 T---PFRAEWDPKDPSESLAVIGRYIS-ENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S 385 (449)
Q Consensus 311 ~---~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d 385 (449)
. .....|+|+ |+.++ ..........|++||+.+++... +..+. ..+..+.. ++++.|+..+ .
T Consensus 317 ~~~~~~~p~fspD---------G~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~-~~v~~~~~--~d~~~i~f~~~~ 383 (740)
T 4a5s_A 317 GRFRPSEPHFTLD---------GNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGT-WEVIGIEA--LTSDYLYYISNE 383 (740)
T ss_dssp SSSSCCCCEECTT---------SSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSS-SCEEEEEE--ECSSEEEEEESC
T ss_pred ccCcCCCceEcCC---------CCEEEEEEEcCCCceEEEEEECCCCceEe-cccCC-EEEEEEEE--EeCCEEEEEEec
Confidence 1 225679998 43222 11122334679999998776553 33333 33444423 4455554432 2
Q ss_pred -------CeEEEEcCCCch
Q 013086 386 -------RSIFIWRPKEKS 397 (449)
Q Consensus 386 -------g~i~iw~~~~~~ 397 (449)
..|+..++..++
T Consensus 384 ~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 384 YKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp GGGCTTCBEEEEEETTEEE
T ss_pred CCCCCceeEEEEEECCCCC
Confidence 355556665543
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=3.3e-16 Score=139.84 Aligned_cols=261 Identities=8% Similarity=0.033 Sum_probs=178.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCC------------------------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKK------------------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT 128 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 128 (449)
-+.|.+++++++| +++++...+ +.|.+||..++........++...+..++++|+
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4679999999999 678877766 479999998887766665456678999999998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCc-eeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEc-CCCeEEEEECCCCCCcc
Q 013086 129 NDGTVYAASSDGTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVAD-NFGFLYLVDARTNSRSG 205 (449)
Q Consensus 129 ~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~ 205 (449)
++++++...++.|++||..... .+..+......-........+..++++| ++.++++.+ .++.|++||. .+....
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~ 179 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVT 179 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEE
Confidence 8888888889999999986542 3333321110000112223488999999 777777775 6899999994 333322
Q ss_pred ceEEeecC--------CCceEEEEEcCCC-CCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE
Q 013086 206 EAILIHRK--------GSKVVGLHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 206 ~~~~~~~~--------~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 276 (449)
.. ..... -.....++++| + +.++++...++.|++||..+++....+....+...+..++|+| +..+++
T Consensus 180 ~~-~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 180 QW-GEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EE-CEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred Ee-ccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 11 11111 12388999999 6 7888888889999999987544433332224556788888888 432222
Q ss_pred eeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE
Q 013086 277 TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
. |.+ .+ +...+..|++||..+++.+
T Consensus 257 ~---g~~-------------------------------------------------~v---~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 257 N---GKP-------------------------------------------------YF---GDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp E---CCC-------------------------------------------------CT---TCSCCCCEEEEETTTCCEE
T ss_pred C---CCE-------------------------------------------------Ee---ccCCCcEEEEEEcCCCeEE
Confidence 1 110 01 2344567889999899888
Q ss_pred EEEe--cCccceeceeeecCCCCcEEeecC-CCeEEEEcCCC
Q 013086 357 AEVM--DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 395 (449)
Q Consensus 357 ~~~~--~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~ 395 (449)
..+. ..+......+ +++|+|.++++.. ++.|++|++..
T Consensus 282 ~~~~~~~~~~~~p~~i-a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 282 DVFKPVRKHFDMPHDI-VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCSSSCCSSEEEE-EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCCccCCeeEE-EECCCCCEEEEECCCCEEEEEeCCc
Confidence 8774 2233456677 8999998888877 89999999754
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=172.78 Aligned_cols=308 Identities=7% Similarity=0.024 Sum_probs=185.0
Q ss_pred cccceeeeccCc---cEEEEEEeCCCCcEEEEEcC---------CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCC
Q 013086 63 QVNCAVIRYHSR---RVTCLEFHPTNNHILLSGDK---------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTND 130 (449)
Q Consensus 63 ~~~~~~~~~h~~---~V~~~~~~~~~~~~l~t~~~---------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 130 (449)
......+.+|.. .|.+++||||| ++|++++. ++.|++||+.++...... .....+..++|+|+ +
T Consensus 46 g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPD-G 121 (719)
T 1z68_A 46 GQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPV-G 121 (719)
T ss_dssp CCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSS-T
T ss_pred CcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCC-C
Confidence 334445555544 49999999999 56777665 689999999987652111 01256889999999 8
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCC--CCCCCc-------ccceeEEEEecCCCEEEEEcCCC----------
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNG--WHGPRT-------WRMLYGMDINPEKGVVLVADNFG---------- 191 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg---------- 191 (449)
+.|+.+. ++.|++|++.+++........... ..+... .....+++|+|||+.|++++.+.
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 8888886 789999999988765432111000 000000 01125899999999999987542
Q ss_pred ------------------------eEEEEECCCCCCc--cceE---EeecCCCceEEEEEcCCCCCEEEEEeCC----Ce
Q 013086 192 ------------------------FLYLVDARTNSRS--GEAI---LIHRKGSKVVGLHCNPIQPELLLSCGND----HF 238 (449)
Q Consensus 192 ------------------------~i~i~d~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~ 238 (449)
.|++||+.++... ..+. ....+...+..++|+| ++.++++.... ..
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSV 279 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEE
Confidence 7889999876532 0000 0113445789999999 77777764432 24
Q ss_pred EEEEE----ccCCCCCCcee--ecCCCCcEE-----EEEEcCCCCEEEE--eeCCC--cEEEEeCCCCCCCCCCccceec
Q 013086 239 ARIWD----IRRLEAGSSLC--DLPHKRVVN-----SAYFSPSGSKILT--TSQDN--RLRIWDSIFGNLDSPSREIVHS 303 (449)
Q Consensus 239 i~iwd----~~~~~~~~~~~--~~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~ 303 (449)
|.+|| +.+++....+. ...+...+. .+.|+|+|+.|+. +..+| .|.+||+.+++.. . +..
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~----~-lt~ 354 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI----Q-ITS 354 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE----E-CSC
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE----e-ccc
Confidence 88899 76655544331 024555565 7899999996654 44455 5777777665421 1 111
Q ss_pred CCCCccccceeeeeccCCCCCceEEEcceecccCCCCC----CcceEEEECCC--ce-EEEEEecC---ccceeceeeec
Q 013086 304 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA----LHPIDFIDITT--GQ-LVAEVMDP---NITTISPVNKL 373 (449)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----d~~i~iwd~~~--~~-~~~~~~~~---~~~~v~~v~~~ 373 (449)
... ....+.+. + ++.+.. ++.. ++.+++|.+.. +. ....+... +...+..+ .|
T Consensus 355 ~~~----~v~~~~~~-d---------~~~i~~--~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~ 417 (719)
T 1z68_A 355 GKW----EAINIFRV-T---------QDSLFY--SSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA-SF 417 (719)
T ss_dssp SSS----CEEEEEEE-C---------SSEEEE--EESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE-EE
T ss_pred Cce----EEEEEEEE-e---------CCEEEE--EEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE-EE
Confidence 111 01122333 3 332221 2222 57788887653 42 12333221 21334445 79
Q ss_pred CCCCcEEee-cC-C--CeEEEEcCCCchh
Q 013086 374 HPRDDVLAS-GS-S--RSIFIWRPKEKSE 398 (449)
Q Consensus 374 ~~~~~~l~s-~s-d--g~i~iw~~~~~~~ 398 (449)
+|++++++. ++ + ..+.+|++.+++.
T Consensus 418 s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 418 SDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 999987774 33 2 6789999987763
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=3.1e-17 Score=147.93 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=157.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc-----CCceeEEEEeeCCCCeEEEEeCC----------
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-----SCIVNNIRFNPTNDGTVYAASSD---------- 139 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~d---------- 139 (449)
.+..++|+|+|..+++++..++.|.+||+.+++....+...+ ...+..++|+|+ +++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC-CCEEEEEccccccccccccc
Confidence 577899999995556677788999999999887776653223 234789999999 8888888865
Q ss_pred --CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCC--
Q 013086 140 --GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-- 215 (449)
Q Consensus 140 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 215 (449)
+.|.+||+.+++....+...... ..+.+++|+|+++ +++++. .|.+||+.+++..... .......
T Consensus 123 ~~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~-~~~~~~~~~ 191 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEAKPVRTFPMP-------RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVAL-PLRNWNRKG 191 (349)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEECC-------SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEE-CSTTCCCTT
T ss_pred CCCeEEEEECCCccccceeeeccCC-------CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccc-cccccCCcc
Confidence 89999999886543322111110 1278899999999 666544 4999999887643211 1110000
Q ss_pred --------------------ceEEEEEcCCCCC-----------EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEE
Q 013086 216 --------------------KVVGLHCNPIQPE-----------LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 264 (449)
Q Consensus 216 --------------------~v~~~~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 264 (449)
....+++++ ++. ++.....++.+.+|++. .+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 259 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFK-DDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------DLTELYFT 259 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEE-----------ECSSCEEE
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecC-CCcCCccccccceeEEEEeccCCcEEecccc-----------cCCCccee
Confidence 233455554 221 11122233444444432 24456889
Q ss_pred EEEcC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc
Q 013086 265 AYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 265 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
++|+| ++++|+++ ++.|.+||+.+++..... . . ...+..+.|+|+ |+++. .+..++
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~---~--~~~~~~~~~s~d---------g~~l~---~~~~~~ 316 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA----N---L--DHTYYCVAFDKK---------GDKLY---LGGTFN 316 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE----E---C--SSCCCEEEECSS---------SSCEE---EESBSS
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEE----c---C--CCCccceEECCC---------CCEEE---EecCCC
Confidence 99999 99999988 889999999887642211 1 1 112346889988 55554 245669
Q ss_pred ceEEEECCCceEEEEEecC
Q 013086 344 PIDFIDITTGQLVAEVMDP 362 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~ 362 (449)
.|.+||+.+++.+..+..+
T Consensus 317 ~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 317 DLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTTEEEEEEECS
T ss_pred eEEEEeccccceeeeeecC
Confidence 9999999999998888655
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.1e-18 Score=160.46 Aligned_cols=296 Identities=13% Similarity=0.036 Sum_probs=174.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 75 RVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
.+..++|+|+|..++++...+ ..|.+||+.++...... ..+......+.|+|+ ++.|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD-ERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT-SSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC-CCEEEEEEcCCcEEEEECCCCCc
Confidence 367789999995444444433 36888898887654332 223323334789999 99999999899999999998876
Q ss_pred eeeeecCCCCCCCCCccccee-------------EEEEecCCCEEEEE-----cCCCeEEEEECCCCCCccceEEeecCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLY-------------GMDINPEKGVVLVA-----DNFGFLYLVDARTNSRSGEAILIHRKG 214 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~ 214 (449)
......+.. +... ...+. .+.|+|+++.++.+ ..+..|++||+.+++.. ......
T Consensus 115 ~~~~~~~~~-~~~~--g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~~ 187 (396)
T 3c5m_A 115 QVIYTVDEE-WKGY--GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQDT 187 (396)
T ss_dssp EEEEECCTT-EEEE--EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEEES
T ss_pred EEEEecccc-cCCC--CCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE----eeccCC
Confidence 555443221 0000 00000 03567777776654 35678999999886543 112233
Q ss_pred CceEEEEEcCCCCCEEEEEeCC------CeEEEEEccCCCCCCceeecCC--CCcEEEEEEcCCCCEEEEeeCC-----C
Q 013086 215 SKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPH--KRVVNSAYFSPSGSKILTTSQD-----N 281 (449)
Q Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g 281 (449)
..+..+.|+|.++..|+..+.+ ..|.+||+..... .....+ ...+..+.|+|+|++|+.++.+ +
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 4688999998445656555443 3688888864322 111122 3358889999999988777554 4
Q ss_pred cEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc-CCCCCceEEEcce---ecc---cCCCCCCcceEEEECCCce
Q 013086 282 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRY---ISE---NYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~---~~~---~~~~~~d~~i~iwd~~~~~ 354 (449)
.|++||+.+++... +.. .... ...|+| +.. .++..+.- ... .+....+..|++||+.+++
T Consensus 265 ~l~~~d~~~g~~~~----l~~---~~~~----~~~~s~~dg~--~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 265 VIYKANPETLENEE----VMV---MPPC----SHLMSNFDGS--LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEEECTTTCCEEE----EEE---CCSE----EEEEECSSSS--EEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred eEEEEECCCCCeEE----eee---CCCC----CCCccCCCCc--eEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 49999998775421 111 1111 267888 621 22211100 000 0011245789999998887
Q ss_pred EEEEEecCccc----------eeceeeecCCCCcEEeecC--CCeEEE--EcCCCch
Q 013086 355 LVAEVMDPNIT----------TISPVNKLHPRDDVLASGS--SRSIFI--WRPKEKS 397 (449)
Q Consensus 355 ~~~~~~~~~~~----------~v~~v~~~~~~~~~l~s~s--dg~i~i--w~~~~~~ 397 (449)
.. .+..+... ....+ +|+|+|+.|+.++ ++...| .++.+++
T Consensus 332 ~~-~l~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 332 AQ-KLCKHSTSWDVLDGDRQITHPHP-SFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CC-EEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred eE-EccCCCCccccccccccCCCCCc-eEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 53 34333211 13334 7999999888755 454444 4555544
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=3.6e-17 Score=160.80 Aligned_cols=300 Identities=13% Similarity=0.053 Sum_probs=183.1
Q ss_pred cceeeeccCccEEEEEEeCCCCcEEEEE--cCCCcEEEEeCcCCeeeEEEecccCCcee---------EEEEe--eCCCC
Q 013086 65 NCAVIRYHSRRVTCLEFHPTNNHILLSG--DKKGQVGVWDFYKVSEKIVYGNIHSCIVN---------NIRFN--PTNDG 131 (449)
Q Consensus 65 ~~~~~~~h~~~V~~~~~~~~~~~~l~t~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~ 131 (449)
....+.+|...|..++|++++ .++++. +.++...||....+.....+ ..|...+. ...|+ |+ ++
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD-g~ 91 (662)
T 3azo_A 15 DAALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA-GG 91 (662)
T ss_dssp CHHHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS-SS
T ss_pred CHHHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC-CC
Confidence 345688899999999999876 556666 56888999996444444444 44655656 66676 88 66
Q ss_pred e-EEEEeC-CCeEEEEeCC--C-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC----------CeEEEE
Q 013086 132 T-VYAASS-DGTVSCTDLE--T-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----------GFLYLV 196 (449)
Q Consensus 132 ~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~ 196 (449)
. |+.++. +..|.++++. . +.. ..+..... ......+..++|+|||+.|++++.+ ..|++|
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSA----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCC----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCcc----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 6 665543 5677777775 3 433 22221100 0012247899999999999988776 589999
Q ss_pred ECCC------CCCccceEEee-cCCCceEEEEEcCCCCCEEEEEeCC--------CeEEEEEcc-CCCCCCceeec-CCC
Q 013086 197 DART------NSRSGEAILIH-RKGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIR-RLEAGSSLCDL-PHK 259 (449)
Q Consensus 197 d~~~------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~-~~~ 259 (449)
|+.+ +... ... .....+..++|+| +++.|+.++.+ ..|++||+. ++......... ++.
T Consensus 167 ~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 167 PLDGSAAADRSAVR----ELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp ETTSTTTTCGGGSE----ESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ECCCCccccCCcee----EEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 9987 3321 222 3334678899999 99999887754 479999997 33111122222 346
Q ss_pred CcEEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCCCCCccceecCCCC--cc-ccceeeeeccCCCCCceEEEcceec
Q 013086 260 RVVNSAYFSPSGSKILTTSQDN--RLRIWDSIFGNLDSPSREIVHSHDFN--RH-LTPFRAEWDPKDPSESLAVIGRYIS 334 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 334 (449)
..+..+.|+|||+++++++.++ .|.+||+.+++...... ...... .. .....+.|+|+ +++++
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~---------~~~~~ 309 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLAN---------GLIAV 309 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTT---------SCEEE
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCC---------CEEEE
Confidence 7899999999999888888888 66667765554321100 000000 00 00113444444 44444
Q ss_pred ccCCCCCCcceEEE--ECCCceEEEEEecCccceeceeeecCCCCcEEe--ecC-C--CeEEEEcCCCch
Q 013086 335 ENYNGAALHPIDFI--DITTGQLVAEVMDPNITTISPVNKLHPRDDVLA--SGS-S--RSIFIWRPKEKS 397 (449)
Q Consensus 335 ~~~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~--s~s-d--g~i~iw~~~~~~ 397 (449)
++.. +.++|| |+.+++ +..+..+. ..+..+ +++++..++ +++ + ..|.+|++.+++
T Consensus 310 ---~~~~-~~~~l~~~d~~~~~-~~~l~~~~-~~~~~~--~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 310 ---VHGK-GAAVLGILDPESGE-LVDAAGPW-TEWAAT--LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ---EEBS-SSCEEEEEETTTTE-EEECCSSC-CEEEEE--EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ---EEEc-CccEEEEEECCCCc-EEEecCCC-CeEEEE--EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3455 778888 666665 55665553 445433 255555333 344 4 356666776665
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=5.8e-17 Score=146.38 Aligned_cols=290 Identities=8% Similarity=-0.031 Sum_probs=184.3
Q ss_pred CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----------CCCeEEEEeCCCCceeeeeecCCCCC
Q 013086 94 KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVNPNGW 163 (449)
Q Consensus 94 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~ 163 (449)
.|+.|.+||..+++....+. .+..+ .++|+|+ +++++++. .++.|.+||+.+++.+..+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEec-CCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 47899999999888776663 44444 8999999 88888886 26789999999998888876543211
Q ss_pred CCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 164 HGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
. .......++++|++++|+++.. ++.|.+||+.+.+....+ . ... ....+.+.|.....+++.+.||.+.+
T Consensus 105 ~---~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~--i-~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 105 Q---GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV--T-AAA-GCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp C---BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE--G-GGT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred c---cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE--e-cCC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence 0 1123678999999999998864 689999999987543210 1 111 22335677744578888889999999
Q ss_pred EEccCCCCCC-ce---eec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccce--e----cCCCCccc
Q 013086 242 WDIRRLEAGS-SL---CDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV--H----SHDFNRHL 310 (449)
Q Consensus 242 wd~~~~~~~~-~~---~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~----~~~~~~~~ 310 (449)
|++....... .. ..+ ....+ ..+.+++++..++..+.++.+.++|+..+.... ..... . ...+. ..
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~-p~ 254 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV-DGPWSLLNDEDKAKNWV-PG 254 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-EEEEESCCHHHHHTTCE-EC
T ss_pred EEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-cccccccCccccccccc-cC
Confidence 9985421110 00 011 11122 233446778888888889999999986543210 00000 0 00000 00
Q ss_pred cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEE
Q 013086 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFI 390 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~i 390 (449)
....+.++|+.....+...-.--. .......+.|.+||+.+++.+.++..+. ...+ +|+|+|++|++++++.|.+
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~-~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~i-a~spdg~~l~v~n~~~v~v 329 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKE-GTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSM-TIDQQRNLMLTLDGGNVNV 329 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCT-TCTTCCCSEEEEEETTTTEEEEEEECTT---CCEE-EEETTTTEEEEECSSCEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCc-ccccCCCceEEEEECCCCcEEEEEecCC---eeEE-EECCCCCEEEEeCCCeEEE
Confidence 011245666632111111000000 0000124589999999999999998775 6777 8999999998877799999
Q ss_pred EcCCCc--hhhhhh
Q 013086 391 WRPKEK--SELVEQ 402 (449)
Q Consensus 391 w~~~~~--~~~~~~ 402 (449)
||..++ +.+..+
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 877775
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=5.4e-16 Score=135.68 Aligned_cols=200 Identities=11% Similarity=0.164 Sum_probs=141.0
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-----cccCCceeEEEEeeCCCCeEEEEeC-CCeEEE
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-----NIHSCIVNNIRFNPTNDGTVYAASS-DGTVSC 144 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~i 144 (449)
+|-....++++++++ +++++...++.|.+||... .....+. .++...+..+++.+.++.++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCC-CEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 456679999999998 6888888889999999874 4444332 1244678999995331555555533 789999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
|| .+++....+.... ...+..++++++++++++...++.|.+||... .... ..........+..+++++
T Consensus 105 ~d-~~g~~~~~~~~~~--------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~-~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATI--------LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH-KFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp EC-TTSCEEEEECTTT--------CSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE-EEECTTTCSSEEEEEECS
T ss_pred EC-CCCcEEEEecCcc--------CCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE-EeCCCCccCCcEEEEECC
Confidence 99 5666665553211 12378999999999888888889999999653 2211 111112334689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceeec---CCCCcEEEEEEcCCCCEEEEeeCCC-cEEEEeC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDS 288 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~ 288 (449)
+++++++...++.|++||... ..+..+ ++...+..++++++|+++++...++ .|.+||.
T Consensus 174 -~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 174 -KQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp -SSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred -CCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 888888888899999999742 223223 2235788999999998888877775 8999884
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=4.1e-17 Score=148.04 Aligned_cols=257 Identities=10% Similarity=0.026 Sum_probs=160.0
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCc-CCeeeEEEecccCCceeEEEEeeCCCCe--EEEEe------------
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY-KVSEKIVYGNIHSCIVNNIRFNPTNDGT--VYAAS------------ 137 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~--l~s~~------------ 137 (449)
...+..++|+|+| ++|++++.+ .|.+|++. ++...........+.+.+++|+|+ +++ ++++.
T Consensus 39 ~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC-CCEEEEEEecCCcceeccceee
Confidence 3467889999999 577787777 99999997 665443321111123567899999 774 44553
Q ss_pred -CCCeEEEEeCC-CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CCCeEEEEECC-CCCCccceEEee--
Q 013086 138 -SDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDAR-TNSRSGEAILIH-- 211 (449)
Q Consensus 138 -~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~-- 211 (449)
.+|.+.+|++. .++....+..... .....+.+++|+|++++++++. .++.|++||+. +++... .....
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~ 189 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEY-----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAP 189 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECS
T ss_pred cCCceEEEEccCCCCcCcceEeeEEe-----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecC
Confidence 68999999997 4655433332100 0112388999999999888765 46799999998 554321 11121
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEccC--CCCC---CceeecC-----CCC------cEEEEE-EcCCCCE
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRR--LEAG---SSLCDLP-----HKR------VVNSAY-FSPSGSK 273 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~---~~~~~~~-----~~~------~v~~~~-~~~~~~~ 273 (449)
.+...+..++|+| +++++++++. ++.|.+|++.. ++.. ..+.... +.. .+..++ |+|+|++
T Consensus 190 ~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 190 DPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp STTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 1244689999999 9988877764 68999998753 2211 1122221 122 588999 9999999
Q ss_pred EEEeeCCC------cEEEEeCC-CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCC-CCcce
Q 013086 274 ILTTSQDN------RLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA-ALHPI 345 (449)
Q Consensus 274 l~~~~~dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~d~~i 345 (449)
|++++.+. .|.+|++. ++++... ....... ...+..++|+|..- .|++++ .+. .++.|
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~-~~~~~~~----~~~~~~~a~sp~~~------dg~~l~---v~~~~~~~v 334 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQ-LFLSPTP----TSGGHSNAVSPCPW------SDEWMA---ITDDQEGWL 334 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEE-EEEEECS----SCCTTCCCEEECTT------CTTEEE---EECSSSCEE
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEEEe-eeeeecC----CCCcccceecCCCc------CCCEEE---EEEcCCCeE
Confidence 88776432 89999996 4442100 0000000 01122456777200 266655 333 45899
Q ss_pred EEEECCCc
Q 013086 346 DFIDITTG 353 (449)
Q Consensus 346 ~iwd~~~~ 353 (449)
.+|++...
T Consensus 335 ~v~~~~~~ 342 (365)
T 1jof_A 335 EIYRWKDE 342 (365)
T ss_dssp EEEEEETT
T ss_pred EEEEEchh
Confidence 99998765
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=4e-17 Score=162.12 Aligned_cols=262 Identities=10% Similarity=0.076 Sum_probs=164.1
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-------
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------- 190 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 190 (449)
....++.|+|+ +.+++++ |++|++||+.+++....+..+... ........++|+||+++|+.++.+
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD----EFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTT----TCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhh----hhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 34678999999 8888876 899999999999887665544321 011113458899999999998875
Q ss_pred --CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcE------
Q 013086 191 --GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV------ 262 (449)
Q Consensus 191 --g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v------ 262 (449)
+.+.+||+.+++... ...+...+...+|+| +++.|+.+. ++.|++|++.++... .+...++...+
T Consensus 90 ~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLIT----EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSY-RITWTGKEDIIYNGITD 162 (740)
T ss_dssp EEEEEEEEETTTTEECC----SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCE-ECCSCCBTTTEEESBCC
T ss_pred cceEEEEEECCCCcEEE----cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceE-EEcCCCCccceecCccc
Confidence 667899999876432 223344799999999 999998885 689999999765432 12111222222
Q ss_pred -----------EEEEEcCCCCEEEEeeCCC------------------------------------cEEEEeCCC---CC
Q 013086 263 -----------NSAYFSPSGSKILTTSQDN------------------------------------RLRIWDSIF---GN 292 (449)
Q Consensus 263 -----------~~~~~~~~~~~l~~~~~dg------------------------------------~i~vwd~~~---~~ 292 (449)
..+.|||||++|+.++.|. .|++||+.+ ++
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 3589999999999876432 467777766 52
Q ss_pred CCCCCccceecCCC-CccccceeeeeccCCCCCceEEEcceeccc-CCCCCCcceEEEECCCce----EE--EEE-ecCc
Q 013086 293 LDSPSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTGQ----LV--AEV-MDPN 363 (449)
Q Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~d~~i~iwd~~~~~----~~--~~~-~~~~ 363 (449)
..... .+...... ........+.|+|+ |+.++.. ..+..+..|.+||+.+|+ +. ..+ ...+
T Consensus 243 ~~~~~-~l~~~~~~~~~~~~~~~~~wspd---------g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 243 NATSI-QITAPASMLIGDHYLCDVTWATQ---------ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp CCCEE-EECCCHHHHTSCEEEEEEEEEET---------TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred cceEE-EecCCccCCCCCeEEEEEEEeCC---------CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 11100 00000000 01112346789998 3322211 134456689999999887 21 112 1112
Q ss_pred cceec-----eeeecCCCCcEEe-ecC--C--CeEEEEcCCCchhhhhhhc
Q 013086 364 ITTIS-----PVNKLHPRDDVLA-SGS--S--RSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 364 ~~~v~-----~v~~~~~~~~~l~-s~s--d--g~i~iw~~~~~~~~~~~~~ 404 (449)
...+. .. +|+|||+.|+ ..+ + ..|++|++.+++......+
T Consensus 313 ~~~v~~~~~~~p-~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 313 TGWVGRFRPSEP-HFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp SSCSSSSSCCCC-EECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS
T ss_pred CceEccCcCCCc-eEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC
Confidence 12222 44 7999999777 544 3 5788899887765443333
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=7.8e-16 Score=140.94 Aligned_cols=264 Identities=13% Similarity=0.069 Sum_probs=165.8
Q ss_pred EEeCcCCeeeEEEecccCCceeE-----EEEeeCCCCeEEEEeC-CC--eEEEEeCCCCceeeeeecCCCCCCCCCcccc
Q 013086 100 VWDFYKVSEKIVYGNIHSCIVNN-----IRFNPTNDGTVYAASS-DG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRM 171 (449)
Q Consensus 100 vwd~~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (449)
.++..++.....+ ..|...... .+|+|+ ++.|+.++. ++ .|.+||+.+++.......+.. .
T Consensus 14 ~~~~~~g~~~~~l-t~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~---------~ 82 (388)
T 3pe7_A 14 YQDASTGAQVTRL-TPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD---------N 82 (388)
T ss_dssp EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB---------C
T ss_pred EecCCCCcceEEe-cCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC---------C
Confidence 4466666666555 445555555 789999 888888876 66 488889998877655433221 1
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEE--EEcCCCCCEEEEE----------------
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL--HCNPIQPELLLSC---------------- 233 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~---------------- 233 (449)
+....|+|+++.|+.+..++.|++||+.+++... + .......+... .++| ++.+++..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~--~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V--YQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e--eechhhcccccceeECC-CCCeeccccccCcccccccccchh
Confidence 3457899999999999999999999999876432 1 12222234333 3477 88877642
Q ss_pred ------eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCCCCCCCccc
Q 013086 234 ------GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQD------NRLRIWDSIFGNLDSPSREI 300 (449)
Q Consensus 234 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~ 300 (449)
..+..|++||+.+++. .....+...+..+.|+| +|+.|+.++.+ ..|.++|+..+.... +
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l 231 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGES---TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK----V 231 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCE---EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE----S
T ss_pred hhhhccCCcceEEEEECCCCce---EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE----e
Confidence 2447899999987543 22224566789999999 99999887753 378888876554311 1
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccC--CCCCCcceEEEECCCceEEE--EEecCcc--ceeceeeecC
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAALHPIDFIDITTGQLVA--EVMDPNI--TTISPVNKLH 374 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~d~~i~iwd~~~~~~~~--~~~~~~~--~~v~~v~~~~ 374 (449)
. .. ..........|+|+ |+.++... .+..+..|++||+.+++... .+.+... .....+ +|+
T Consensus 232 ~-~~--~~~~~~~~~~~spd---------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~-~~s 298 (388)
T 3pe7_A 232 K-TH--AEGESCTHEFWVPD---------GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS-LMV 298 (388)
T ss_dssp C-CC--CTTEEEEEEEECTT---------SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS-EEE
T ss_pred e-eC--CCCcccccceECCC---------CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC-eEc
Confidence 1 11 10011235689998 33332110 12333459999999987533 2222100 012223 699
Q ss_pred CCCcEEeec---------C-CCeEEEEcCCCchh
Q 013086 375 PRDDVLASG---------S-SRSIFIWRPKEKSE 398 (449)
Q Consensus 375 ~~~~~l~s~---------s-dg~i~iw~~~~~~~ 398 (449)
|||+.|+.. . +..|++|++.+++.
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTEE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 999988853 4 67999999988764
No 172
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=7.9e-14 Score=122.57 Aligned_cols=287 Identities=6% Similarity=-0.029 Sum_probs=187.7
Q ss_pred eeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
+..+...+.+++++++| +++++...++.|.+||.. +.........+...+.++++.++ +.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC
Confidence 34456789999999999 567666667899999988 44333322334577999999998 7777777768899999986
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
++. ..+.... ....+..+++.+++.++++...++.|..||. ++... ..........+..+++.+ ++.
T Consensus 87 -g~~-~~~~~~~-------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~--~~~~~~~~~~~~~i~~~~-~g~ 153 (299)
T 2z2n_A 87 -GII-KEYTLPN-------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR--EYELPNKGSYPSFITLGS-DNA 153 (299)
T ss_dssp -SCE-EEEECSS-------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE--EEECSSTTCCEEEEEECT-TSC
T ss_pred -CcE-EEEeCCC-------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE--EecCCCCCCCCceEEEcC-CCC
Confidence 332 2332211 1123889999999988888878899999998 43322 112222334689999999 888
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCc
Q 013086 229 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (449)
++++...++.|..||. +++.. .+........+..+++++++.++++...++.|.+||. +++... . ... ..
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~----~-~~~--~~ 223 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDIT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE----F-KIP--TP 223 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE----E-ECS--ST
T ss_pred EEEEeCCCCEEEEEcC-CCcEE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE----E-ECC--CC
Confidence 8887777789999998 43221 1111233456889999999997777767889999998 655311 1 000 11
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe-cCccceeceeeecCCCCcEEeecCCCe
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLASGSSRS 387 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~sdg~ 387 (449)
...+..+.++++ |++.+ +...++.|..||. +++. ..+. ......+..+ ++ +++.++++.+.+.
T Consensus 224 ~~~~~~i~~~~~---------g~l~v---~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i-~~-~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 224 NARPHAITAGAG---------IDLWF---TEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGI-CF-DGETIWFAMECDK 287 (299)
T ss_dssp TCCEEEEEECST---------TCEEE---EETTTTEEEEEET-TTEE-EEEECSSSSCCEEEE-EE-CSSCEEEEETTTE
T ss_pred CCCceeEEECCC---------CCEEE---eccCCceEEEECC-CCce-EEEeCCCCCCccceE-Ee-cCCCEEEEecCCc
Confidence 123345667776 44333 2334678999998 5543 3332 2222456666 67 8888877766667
Q ss_pred EEEEcCCCch
Q 013086 388 IFIWRPKEKS 397 (449)
Q Consensus 388 i~iw~~~~~~ 397 (449)
|..++.++++
T Consensus 288 l~~~~~~~~~ 297 (299)
T 2z2n_A 288 IGKLTLIKDN 297 (299)
T ss_dssp EEEEEEC---
T ss_pred EEEEEcCccc
Confidence 7777776653
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=1e-15 Score=137.03 Aligned_cols=276 Identities=9% Similarity=0.002 Sum_probs=176.2
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
..|.++.|++++ ..++..+.++.++.|. ......+ ..+...+.+++|+++ +++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTIT---AEPWLEI-SKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEEE---CEEEEEE-ESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCc-cceeEEeecccCcccc---cceeEEE-eccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEE
Confidence 347778899887 4566667788999992 3333344 346667899999998 887778888999999999888765
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC----CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 229 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (449)
....... ..+.+++++++++++++...+ +.|.+||..+..... ..........+..++++| ++.+
T Consensus 80 ~~~~~~~---------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~i~~d~-~g~l 148 (333)
T 2dg1_A 80 RPFVSHK---------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDS-KGGF 148 (333)
T ss_dssp EEEECSS---------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECT-TSCE
T ss_pred EEeeCCC---------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE-EEccCccCCcccceEECC-CCCE
Confidence 4432211 238999999999988877766 689999988765421 111112334689999999 8887
Q ss_pred EEEEeC------CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE-eeCCCcEEEEeCCC-CCCCCCCccce
Q 013086 230 LLSCGN------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIF-GNLDSPSREIV 301 (449)
Q Consensus 230 l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~-~~~~~~~~~~~ 301 (449)
+++... .+.|..+|..+.+. .........+..++|+|+++.|++ .+.++.|.+||+.+ +..........
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCE---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEE---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 777653 35666676543222 111122345788999999986654 45678999999864 33211100000
Q ss_pred ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc-----ceeceeeecCCC
Q 013086 302 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI-----TTISPVNKLHPR 376 (449)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~v~~~~~~ 376 (449)
. ........+..++++++ |.+.+ +...++.|.+||. +++.+..+..+.. ..+..+ +|+|+
T Consensus 226 ~-~~~~~~~~~~~i~~d~~---------G~l~v---~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~-~~~~d 290 (333)
T 2dg1_A 226 P-YYFTGHEGPDSCCIDSD---------DNLYV---AMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP-QFIPG 290 (333)
T ss_dssp E-EECCSSSEEEEEEEBTT---------CCEEE---EEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE-EECTT
T ss_pred E-EecCCCCCCCceEECCC---------CCEEE---EEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceE-EECCC
Confidence 0 00111112335667766 44433 2334578999998 5777777754431 145666 78999
Q ss_pred CcEEeecC
Q 013086 377 DDVLASGS 384 (449)
Q Consensus 377 ~~~l~s~s 384 (449)
++.|+.++
T Consensus 291 g~~L~v~~ 298 (333)
T 2dg1_A 291 TNQLIICS 298 (333)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEe
Confidence 87666544
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=3e-15 Score=135.12 Aligned_cols=269 Identities=9% Similarity=0.019 Sum_probs=172.3
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEc----------CCCcEEEEeCcCCeeeEEEecc-----cCCceeEEEEeeCCCC
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTNDG 131 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~----------~d~~i~vwd~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~ 131 (449)
..+..+..+ .++|+|+| ++|+++. .++.|.+||..+.+....+... +......++|+|+ ++
T Consensus 45 ~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd-g~ 120 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD-GK 120 (361)
T ss_dssp EEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT-SS
T ss_pred EEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC-CC
Confidence 455555555 89999999 4566654 3668999999987776665322 2345788999999 88
Q ss_pred eEEEEeC--CCeEEEEeCCCCceeee-eecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccce
Q 013086 132 TVYAASS--DGTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA 207 (449)
Q Consensus 132 ~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 207 (449)
+|+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|++.........
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-----------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-----------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-----------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCC-----------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 8888764 68999999999988766 54321 2234566665 57777888899988887652221100
Q ss_pred EE----eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec---C--------CCCcEEEEEEcCCCC
Q 013086 208 IL----IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---P--------HKRVVNSAYFSPSGS 272 (449)
Q Consensus 208 ~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--------~~~~v~~~~~~~~~~ 272 (449)
.. ..... ....+.+++ ++..++..+.++.|.++|+..... ...... . .......++|+|+++
T Consensus 190 ~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 190 SRSKQMFSVKD-DPIFIAPAL-DKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EECCCCSCTTT-SCBCSCCEE-CSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred ccccceEcCCC-CceEEEecc-cCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCC
Confidence 00 01111 112233355 566777777889999999864321 111110 0 011112378999988
Q ss_pred EEEEeeC-----------CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCC
Q 013086 273 KILTTSQ-----------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 341 (449)
Q Consensus 273 ~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (449)
.++++.. .+.|.+||+.+++.+.. ..... +..+.|+|+ |+++. +++.
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-------i~~~~---p~~ia~spd---------g~~l~---v~n~ 324 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-------IPGRD---ALSMTIDQQ---------RNLML---TLDG 324 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-------EECTT---CCEEEEETT---------TTEEE---EECS
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-------EecCC---eeEEEECCC---------CCEEE---EeCC
Confidence 8877643 34899999988765321 11111 558899998 66554 2334
Q ss_pred CcceEEEECCCc--eEEEEEecCccceeceeeecCCCCc
Q 013086 342 LHPIDFIDITTG--QLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 342 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
+.|.+||..++ +.+.++.... .....+ +++|+|+
T Consensus 325 -~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~-~~~p~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLLRTIEGAA-EASLQV-QFHPVGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEEEEEETTSC-SSEEEE-EECCCSC
T ss_pred -CeEEEEECCCCcceeeEEeccCC-CCcEEE-EecCCCC
Confidence 89999999999 9998874333 333444 6899885
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=2.1e-14 Score=136.16 Aligned_cols=280 Identities=14% Similarity=0.114 Sum_probs=190.7
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC--CCceeeeeecCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNPNGWH 164 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~ 164 (449)
.++++...++.|.++|..+++.+..+. ....+..+.|+|+ ++++++++.|+.|.+||+. +++.+..+....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---- 240 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---- 240 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----
Confidence 577788889999999999988887775 3446779999999 9999999999999999995 777776665422
Q ss_pred CCCcccceeEEEEe----cCCCEEEEEc-CCCeEEEEECCCCCCccceEEeec--------CCCceEEEEEcCCCCCEEE
Q 013086 165 GPRTWRMLYGMDIN----PEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR--------KGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 165 ~~~~~~~i~~~~~~----~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~ 231 (449)
....++|+ |+|++++++. .++.|.++|..+.+.+..+..... ....+..+..++....+++
T Consensus 241 ------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 241 ------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp ------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred ------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 26789999 6999888876 458999999988776543221110 0125778888884456677
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCCccceecCCCCccc
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 310 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (449)
....+|.|.++|........ +...........+.|+|++++|+++. .++.|.++|+.++++... ........+.
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~----i~vgg~~Php 389 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI----EDTGGQTPHP 389 (567)
T ss_dssp EETTTTEEEEEETTCSSEEE-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE----EECSSSSBCC
T ss_pred EecCCCeEEEEecCCCccce-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE----EeccCcCCCC
Confidence 77778999999987543211 22223445567889999999987766 478999999998875321 1110000010
Q ss_pred cceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC-------ceEEEEEecCccceeceeeecCCCCcEEeec
Q 013086 311 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-------GQLVAEVMDPNITTISPVNKLHPRDDVLASG 383 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 383 (449)
..-...++|+. |...+. +...++.|.++|..+ .+.+.++...... -..+ ..+|++++|.+.
T Consensus 390 g~g~~~~~p~~--------g~v~~t--~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-~~~i-~~~p~~~~l~v~ 457 (567)
T 1qks_A 390 GRGANFVHPTF--------GPVWAT--SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-SLFI-KTHPNSQYLYVD 457 (567)
T ss_dssp TTCEEEEETTT--------EEEEEE--EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCE-ECCTTCSEEEEE
T ss_pred ccceeeECCCC--------CcEEEe--CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-CEEE-EeCCCCCeEEEe
Confidence 00011134442 222210 123467899999987 6788888765422 2233 689999988874
Q ss_pred C----C----CeEEEEcCCCc
Q 013086 384 S----S----RSIFIWRPKEK 396 (449)
Q Consensus 384 s----d----g~i~iw~~~~~ 396 (449)
. | ..|.++|+.+.
T Consensus 458 ~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 458 ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSSHHHHTCEEEEEGGGC
T ss_pred cCCCCCcccCceEEEEECCcc
Confidence 4 2 59999999876
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=1.9e-14 Score=126.48 Aligned_cols=204 Identities=10% Similarity=0.048 Sum_probs=140.5
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEE
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 145 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 145 (449)
+..+..+.....+++|+|+|+.+++++..++.|..|+..++ ...+ ..+...+.+++++++ +.++++...++.|.+|
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQ 95 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC-CcEEEEecCCCeEEEE
Confidence 45666677788999999999548889999999999999887 3333 346778999999998 8877777767899999
Q ss_pred eCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE----c-------------CCCeEEEEECCCCCCccceE
Q 013086 146 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA----D-------------NFGFLYLVDARTNSRSGEAI 208 (449)
Q Consensus 146 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~ 208 (449)
|..+++.......... .....+..++++|+|+++++. + ..+.|..++.. +. ..
T Consensus 96 d~~~g~~~~~~~~~~~-----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~ 165 (296)
T 3e5z_A 96 REPGGEWESIADSFEG-----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT----LS 165 (296)
T ss_dssp CSTTCCEEEEECEETT-----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC----EE
T ss_pred cCCCCcEEEEeeccCC-----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC----EE
Confidence 9988876543321111 111236789999999988873 2 13466666655 22 11
Q ss_pred EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC-CCC---CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEE
Q 013086 209 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEA---GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLR 284 (449)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 284 (449)
...........++|+| +++.+++.+.++.|++|++.. +.. ...+ ..+...+..++++++|+++++. ++.|.
T Consensus 166 ~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred EeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 2233344678999999 888887777889999999862 211 1111 1234455677888888755554 66677
Q ss_pred EEeC
Q 013086 285 IWDS 288 (449)
Q Consensus 285 vwd~ 288 (449)
+||.
T Consensus 241 ~~~~ 244 (296)
T 3e5z_A 241 VLTP 244 (296)
T ss_dssp EECT
T ss_pred EECC
Confidence 7765
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=1.5e-14 Score=142.99 Aligned_cols=202 Identities=9% Similarity=-0.000 Sum_probs=130.6
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcC-CC----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe----
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDK-KG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT---- 141 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~-d~----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~---- 141 (449)
+|...+..++|||||. +||.+.. +| .|++||+.+++...... ....+..++|+|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~~wspD-g~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHD-GKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTT-SSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceEEEEeC-CCEEEEEEECCccccc
Confidence 3555789999999995 5554433 33 89999999988765432 2223678999999 888888887765
Q ss_pred ------------EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-----CCeEEEEECCC----
Q 013086 142 ------------VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDART---- 200 (449)
Q Consensus 142 ------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~---- 200 (449)
|++|++.+++....+..... .....+..+.|+|++++|+.+.. +..|++||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-----DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-----TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccC-----CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988764322211111 01122678999999999888754 56899999986
Q ss_pred --CCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC----CeEEEEEccCCCCCCceeecCCC--CcEEEEEEcCCCC
Q 013086 201 --NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND----HFARIWDIRRLEAGSSLCDLPHK--RVVNSAYFSPSGS 272 (449)
Q Consensus 201 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 272 (449)
+..... ....+...+.. .|+| ++..|+..+.. +.|.+||+.+...........+. ..+..+.|++++.
T Consensus 273 ~~~~~~~~--~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 273 ITGILKWV--KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SCSSCCCE--EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cCCccceE--EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 432112 22222223443 4777 77766665543 36999998764321112222333 3688889987777
Q ss_pred EEEEeeCCCcEEE
Q 013086 273 KILTTSQDNRLRI 285 (449)
Q Consensus 273 ~l~~~~~dg~i~v 285 (449)
++++...|+..+|
T Consensus 349 lv~~~~~~g~~~l 361 (710)
T 2xdw_A 349 LVLCYLHDVKNTL 361 (710)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEEEECCEEEE
Confidence 7777777774433
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=3e-15 Score=147.10 Aligned_cols=210 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred eeeeccCccEE---------EEEEe--CCCCc-EEEEEcCCCcEEEEeCc--C-CeeeEEEecc----cCCceeEEEEee
Q 013086 67 AVIRYHSRRVT---------CLEFH--PTNNH-ILLSGDKKGQVGVWDFY--K-VSEKIVYGNI----HSCIVNNIRFNP 127 (449)
Q Consensus 67 ~~~~~h~~~V~---------~~~~~--~~~~~-~l~t~~~d~~i~vwd~~--~-~~~~~~~~~~----h~~~v~~~~~~~ 127 (449)
..+..|...|. ...|+ |||.. ++++...+..|.+|++. + +. ...+... |...+..++|+|
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC
Confidence 44555555555 56565 99965 44454446677777776 2 33 3333221 667889999999
Q ss_pred CCCCeEEEEeCC----------CeEEEEeCCC------CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-
Q 013086 128 TNDGTVYAASSD----------GTVSCTDLET------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF- 190 (449)
Q Consensus 128 ~~~~~l~s~~~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 190 (449)
+ ++.|++++.+ ..|++||+.+ +.......... ..+..++|+|||++|+.++.+
T Consensus 140 D-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 140 E-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH---------RFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp T-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS---------SEECCCEECTTSSEEEEEEECT
T ss_pred C-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC---------CcccCceECCCCCEEEEEECCC
Confidence 9 8888888876 5899999987 54432210111 237788999999999887644
Q ss_pred -------CeEEEEECC-CCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC--eEEEEEccCCCCCCceeecCCCC
Q 013086 191 -------GFLYLVDAR-TNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH--FARIWDIRRLEAGSSLCDLPHKR 260 (449)
Q Consensus 191 -------g~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~ 260 (449)
..|++||+. ++...........+...+..++|+| +++++++++.++ .|++||+.+++. .....+..
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~ 285 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAA---TQLCRREE 285 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCE---EESSCCSS
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCce---eecccccc
Confidence 489999998 4521111112223345799999999 888888888888 666666644322 11121211
Q ss_pred c---------EEEEEEcCCCCEEEEeeCCCcEEEE--eCCCCC
Q 013086 261 V---------VNSAYFSPSGSKILTTSQDNRLRIW--DSIFGN 292 (449)
Q Consensus 261 ~---------v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~ 292 (449)
. +..++|+|+++++++++. +.++|| |+.+++
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 1 567899999999999988 999999 554443
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=7.9e-15 Score=130.68 Aligned_cols=269 Identities=7% Similarity=-0.017 Sum_probs=174.6
Q ss_pred CCCcEEEEeCcCCeeeEEEec-----ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCc
Q 013086 94 KKGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 168 (449)
Q Consensus 94 ~d~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 168 (449)
.++.|.+||..+++....+.. ........+.+.. +.++++...++.|.+||..+++.+..+...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGF--------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECC---------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCC---------
Confidence 478999999998775543311 1234467787753 556666666899999999999988877422
Q ss_pred ccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec---CCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEc
Q 013086 169 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR---KGSKVVGLHCNPIQPELLLSCG-NDHFARIWDI 244 (449)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 244 (449)
.....+++++++..+++...++.|.+||+.+.+..... .... .......+++ . ++.++++.. .++.|.++|+
T Consensus 84 -~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 84 -TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp -SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred -CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence 12788999998854444448899999999987644222 1111 0013456666 3 555555554 4889999999
Q ss_pred cCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC----------CcEEEEeCCCCCCCCCCccceecCCCCcccccee
Q 013086 245 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD----------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR 314 (449)
Q Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (449)
.+.+....+. .......+.++|+|++++++..+ +.|.+||..+++.... . .......+..
T Consensus 160 ~t~~~~~~i~---~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~----~---~~~~g~~p~~ 229 (328)
T 3dsm_A 160 ETDKVVDELT---IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ----F---KFKLGDWPSE 229 (328)
T ss_dssp TTTEEEEEEE---CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE----E---ECCTTCCCEE
T ss_pred CCCeEEEEEE---cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE----E---ecCCCCCcee
Confidence 8755433332 23345778999999977776654 7899999987764211 1 1110113457
Q ss_pred eeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEE-EecCccceeceeeecCC-CCcEEeec----C-CCe
Q 013086 315 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE-VMDPNITTISPVNKLHP-RDDVLASG----S-SRS 387 (449)
Q Consensus 315 ~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~~~~-~~~~l~s~----s-dg~ 387 (449)
++++|+ ++++. ... +.|.+||..+++.... +..........+ +++| ++.++++. . ++.
T Consensus 230 la~~~d---------~~~ly---v~~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi-~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 230 VQLNGT---------RDTLY---WIN--NDIWRMPVEADRVPVRPFLEFRDTKYYGL-TVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp EEECTT---------SCEEE---EES--SSEEEEETTCSSCCSSCSBCCCSSCEEEE-EECTTTCCEEEEECTTSSSEEE
T ss_pred EEEecC---------CCEEE---EEc--cEEEEEECCCCceeeeeeecCCCCceEEE-EEcCCCCeEEEEcccccccCCE
Confidence 888887 33332 111 1799999998876421 111112345666 8998 67777776 5 799
Q ss_pred EEEEcCCCchhhhhhh
Q 013086 388 IFIWRPKEKSELVEQK 403 (449)
Q Consensus 388 i~iw~~~~~~~~~~~~ 403 (449)
|.+|+.. |+.+..+.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 88776654
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=3.4e-14 Score=140.10 Aligned_cols=200 Identities=10% Similarity=-0.025 Sum_probs=130.1
Q ss_pred ccCccEEEEEEeCCCCcEEE-----EEcCCCcEEEEeCcCCeee-EEEecccCCce--eEEEEeeCCCCeEEEEeCCCe-
Q 013086 71 YHSRRVTCLEFHPTNNHILL-----SGDKKGQVGVWDFYKVSEK-IVYGNIHSCIV--NNIRFNPTNDGTVYAASSDGT- 141 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~-----t~~~d~~i~vwd~~~~~~~-~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~- 141 (449)
+|...+.+++|||||. +|| .|+.+..|++||+.++... .. +...+ ..++|+|+ ++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~----~~~~~~~~~~~wspD-g~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVD----VIEGGKYATPKWTPD-SKGFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSC----CBSCCTTCCCEECTT-SSEEEEEECCCCT
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCc----ccCcccccceEEecC-CCEEEEEEecCCC
Confidence 5666899999999995 555 3344568999999988754 21 22222 68999999 888888888766
Q ss_pred ------------EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC----eEEEEECCCCCCcc
Q 013086 142 ------------VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNSRSG 205 (449)
Q Consensus 142 ------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~ 205 (449)
|++|++.++.....+..... .....+..+.|+|+|++|+.+..++ .|++|+..++...
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~- 265 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-----GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR- 265 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-----CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecC-----CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-
Confidence 99999998764222211111 1112378899999999988877555 7777765544321
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEe---CCCeEEEEEccCCCCCCceeecC-C-CCcEEEEEEcCCCCEEEEeeCC
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLP-H-KRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~d 280 (449)
........+....+ + ++.+++... .++.|.+||+.+........... + ...+..++|+ ++.++++...|
T Consensus 266 ---~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d 339 (695)
T 2bkl_A 266 ---LLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD 339 (695)
T ss_dssp ---EEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred ---EeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 22222224555556 4 444555444 25789999997643211122222 2 4567888888 67778888888
Q ss_pred CcEEEEeC
Q 013086 281 NRLRIWDS 288 (449)
Q Consensus 281 g~i~vwd~ 288 (449)
+..+||.+
T Consensus 340 g~~~l~~~ 347 (695)
T 2bkl_A 340 ATSEVRVA 347 (695)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 88888765
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=1.4e-12 Score=123.64 Aligned_cols=311 Identities=9% Similarity=0.000 Sum_probs=194.4
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCc--CCeeeEEEecccCCceeEEEEe----eCCCCeEEEEeC-CCeEEEEeC
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFN----PTNDGTVYAASS-DGTVSCTDL 147 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~-dg~v~iwd~ 147 (449)
.+..+.|+|+| +++++++.|+.|.+||+. +.+....+. .......++|+ |+ +++++++.. +++|.++|.
T Consensus 198 ~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~--~G~~P~~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 198 AVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIK--IGSEARSIETSKMEGWE-DKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp CEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEE--CCSEEEEEEECCSTTCT-TTEEEEEEEETTEEEEEET
T ss_pred CccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEe--cCCCCceeEEccccCCC-CCEEEEEEccCCeEEEEEC
Confidence 46789999999 677788889999999995 666666654 34457899999 68 777777665 699999999
Q ss_pred CCCceeeeeecCCCCCCC--CCcccceeEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 148 ETGLALSLMNVNPNGWHG--PRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
.+.+.+..+......... ......+..+..++++..+ +.....|.|.++|........ . ...........+.|+|
T Consensus 274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-v-~~i~~~~~~~d~~~~p 351 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-T-TEISAERFLHDGGLDG 351 (567)
T ss_dssp TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-E-EEEECCSSEEEEEECT
T ss_pred CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-e-eeeeccccccCceECC
Confidence 999888877643211110 0001137778888886654 445677999999988754322 1 1112333577899999
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCCCCCceee-c--CCCCcEEEEEEcCCCCEE-EEee-CCCcEEEEeCCCCCCCCCCc
Q 013086 225 IQPELLLSCG-NDHFARIWDIRRLEAGSSLCD-L--PHKRVVNSAYFSPSGSKI-LTTS-QDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 225 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l-~~~~-~dg~i~vwd~~~~~~~~~~~ 298 (449)
++++++++. .++.|.++|+.+.+....+.. - .|.+.-..+ ++|++..+ +++. .++.|.++|..+++.....-
T Consensus 352 -dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 352 -SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp -TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred -CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 888766554 578999999987665444433 1 243222222 68875444 4443 46899999998743211000
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCC----CcceEEEECCCc-----eE-EEEEec-------
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA----LHPIDFIDITTG-----QL-VAEVMD------- 361 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----d~~i~iwd~~~~-----~~-~~~~~~------- 361 (449)
.........+ ...+-+..+|+ ++++-....... .++|.++|+.+. .. ...+.-
T Consensus 430 kvv~~i~~~g-~g~~~i~~~p~---------~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~ 499 (567)
T 1qks_A 430 KILDSFPALG-GGSLFIKTHPN---------SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT 499 (567)
T ss_dssp SEEEEEECSC-SCCCCEECCTT---------CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC
T ss_pred EEEEEEecCC-CCCEEEEeCCC---------CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC
Confidence 1111111111 11234556777 333321111121 468999999877 21 123321
Q ss_pred CccceeceeeecCCCCcEEeec--C----CCeEEEEcCCCchhhhhhhc
Q 013086 362 PNITTISPVNKLHPRDDVLASG--S----SRSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 362 ~~~~~v~~v~~~~~~~~~l~s~--s----dg~i~iw~~~~~~~~~~~~~ 404 (449)
.....+..+ .|+|+|+.+..+ + ++.|.|+|.++++++..++.
T Consensus 500 ~~~~~~~~~-~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 500 EGQPRVVQG-EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp SSCCEEEEE-EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCcceEee-eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 112345556 899999877664 2 59999999999988777663
No 182
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=4.4e-12 Score=111.38 Aligned_cols=282 Identities=7% Similarity=-0.051 Sum_probs=183.1
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
....+.++++.++| +++++...++.|.+||.. +.........+...+.++++.++ +.++++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CC
Confidence 45678999999998 677777678899999988 44433222334467899999988 7777776668899999987 55
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
.. .+..... ...+..+++.+++.++++...++.|..+|.. +... ..........+..+++.+ ++++++
T Consensus 94 ~~-~~~~~~~-------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~~~~~~~~i~~d~-~g~l~v 161 (300)
T 2qc5_A 94 FT-EYPLPQP-------DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY--EYDLPNKGSYPAFITLGS-DNALWF 161 (300)
T ss_dssp EE-EEECSST-------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECT-TSSEEE
T ss_pred eE-EecCCCC-------CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE--EccCCCCCCCceeEEECC-CCCEEE
Confidence 43 3322211 1238899999999988888778899999987 4322 112222334689999999 888777
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (449)
+...++.|..||. +.+.. .+........+..++++++|.++++....+.|.+||. +++... .... .....
T Consensus 162 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~----~~~~---~~~~~ 231 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE----YDIP---TPNAR 231 (300)
T ss_dssp EETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE----EECS---STTCC
T ss_pred EecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE----EECC---CCCCC
Confidence 7766789999997 32221 1211133456889999999987777666778999998 443211 0000 11222
Q ss_pred ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEE
Q 013086 312 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIW 391 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw 391 (449)
+..++++++ |++.+ +...++.|..||. +++............+..+ +++++|+++++... .|..+
T Consensus 232 ~~~i~~d~~---------g~l~v---~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~~-~i~~~ 296 (300)
T 2qc5_A 232 PHAITAGKN---------SEIWF---TEWGANQIGRITN-DNTIQEYQLQTENAEPHGI-TFGKDGSVWFALKC-KIGKL 296 (300)
T ss_dssp EEEEEECST---------TCEEE---EETTTTEEEEECT-TSCEEEEECCSTTCCCCCE-EECTTSCEEEECSS-EEEEE
T ss_pred ceEEEECCC---------CCEEE---eccCCCeEEEECC-CCcEEEEECCccCCcccee-EeCCCCCEEEEccC-ceEEe
Confidence 345677776 33333 2234577999998 4544322122122456666 78899987776654 66666
Q ss_pred cCC
Q 013086 392 RPK 394 (449)
Q Consensus 392 ~~~ 394 (449)
+.+
T Consensus 297 ~p~ 299 (300)
T 2qc5_A 297 NLN 299 (300)
T ss_dssp EEC
T ss_pred CCC
Confidence 653
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=3e-13 Score=120.47 Aligned_cols=250 Identities=8% Similarity=-0.038 Sum_probs=169.3
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
....+.+.. + +++++...++.|.+||..+++.+..+. .......++++++ +..+++...++.|.+||..+++...
T Consensus 45 ~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEE
Confidence 356677753 3 677777778999999999988877773 4567899999998 6444444378999999999998887
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
.+...... ........+++ ++..++++. .++.|.++|+.+++..... . .......++++| +++++++
T Consensus 120 ~i~~g~~~----~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~---~g~~p~~i~~~~-dG~l~v~ 188 (328)
T 3dsm_A 120 YIECPDMD----MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL-T---IGIQPTSLVMDK-YNKMWTI 188 (328)
T ss_dssp EEECTTCC----TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE-E---CSSCBCCCEECT-TSEEEEE
T ss_pred EEEcCCcc----ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE-E---cCCCccceEEcC-CCCEEEE
Confidence 77654310 00012456666 345555554 4889999999987654322 1 223467889999 8887777
Q ss_pred EeCC----------CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcccee
Q 013086 233 CGND----------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 302 (449)
Q Consensus 233 ~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 302 (449)
+..+ +.|.++|..+.+....+. .........++|+|++++|+++.. .|.+||+.+++.... ....
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~ 263 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR--PFLE 263 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS--CSBC
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee--eeec
Confidence 6654 789999998654433332 222346889999999999888765 899999988876321 1111
Q ss_pred cCCCCccccceeeeeccCCCCCceEEEcceecccCCC----CCCcceEEEECCCceEEEEEec
Q 013086 303 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG----AALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
. ....+..++++|+. +.+.+ +. ..++.|.+||.. |+.+.++..
T Consensus 264 ~----~~~~p~gi~vdp~~--------g~lyv---a~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 264 F----RDTKYYGLTVNPNN--------GEVYV---ADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp C----CSSCEEEEEECTTT--------CCEEE---EECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred C----CCCceEEEEEcCCC--------CeEEE---EcccccccCCEEEEECCC-CCEEEEEEe
Confidence 0 02234578888864 22222 12 457889999998 988888764
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=7.4e-14 Score=125.69 Aligned_cols=258 Identities=10% Similarity=0.089 Sum_probs=158.1
Q ss_pred ccEEEEEEeCCCCcEEEEE--------cCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---C--
Q 013086 74 RRVTCLEFHPTNNHILLSG--------DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---G-- 140 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~--------~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g-- 140 (449)
..+...++ +|.+++++. ..++.|.+||+.++..... ..+..+.|+|+ ++.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpD-g~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPD-GKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTT-SSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCC-CCEEEEEEeccCCCcc
Confidence 34677777 775444332 1256799999988764332 46789999999 8888877653 3
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC---------------------------CCeE
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---------------------------FGFL 193 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------------------dg~i 193 (449)
.|.+|++.+++........ . +..++|+|+++.|+.++. ...|
T Consensus 86 ~l~~~~~~~g~~~~l~~~~----------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAK----------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEETTTTEEEEEEEES----------E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred eEEEEECCCCceEEEEcCC----------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 4888888887765544321 1 788999999998888763 2579
Q ss_pred EEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC-------eEEEEEccCCCCCCceeecCCCCcEEEEE
Q 013086 194 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-------FARIWDIRRLEAGSSLCDLPHKRVVNSAY 266 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 266 (449)
++||+.+++....+ .. . .+..++|+| ++ +++++..+. ...||.+.+++. ..+ ..+ ..+..+
T Consensus 155 ~~~d~~~~~~~~~l-~~---~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l--~~~-~~~~~~- 222 (347)
T 2gop_A 155 WIFDTESEEVIEEF-EK---P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM--FEK-VSFYAV- 222 (347)
T ss_dssp EEEETTTTEEEEEE-EE---E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEE--EEE-ESEEEE-
T ss_pred EEEECCCCeEEeee-cC---C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce-EEe--ccC-cceeeE-
Confidence 99999876542222 22 2 688999999 88 777776542 334444432221 122 223 444444
Q ss_pred EcCCCCEEEEeeCC--------CcEEEEeCCCCCCCCCCccceecCCCCcccccee-eeeccCCCCCceEEEcceecccC
Q 013086 267 FSPSGSKILTTSQD--------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENY 337 (449)
Q Consensus 267 ~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 337 (449)
+|+|++|+.++.+ ..|.+|| +++... +.. ..... ... +.|+ + | +++
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~----l~~--~~~~~--~~~~~~~s-d---------g-~~~--- 277 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG----ILD--EVDRG--VGQAKIKD-G---------K-VYF--- 277 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE----SST--TCCSE--EEEEEEET-T---------E-EEE---
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC--CCceEe----ccc--cCCcc--cCCccEEc-C---------c-EEE---
Confidence 9999998887754 3677787 443211 110 11111 112 5676 5 4 332
Q ss_pred CCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeE-EEEcCC
Q 013086 338 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI-FIWRPK 394 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i-~iw~~~ 394 (449)
++..++.+++| +.+++.... ..+ ...+..+ +|+| .++++++ ++.. .||.+.
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~-~~~-~~~v~~~-~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPI-AKG-RHWIMGF-DVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEE-ECS-SSEEEEE-EESS--SEEEEEECSSSCCEEEEES
T ss_pred EEecCCcEEEE-EcCCceEEE-ecC-CCeEEee-eeeC--cEEEEEcCCCChHHheEeC
Confidence 45667789999 876665433 333 3567777 7999 5666655 5443 666654
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=1.9e-13 Score=118.31 Aligned_cols=196 Identities=6% Similarity=0.009 Sum_probs=133.5
Q ss_pred cEEEEEEeCCCCcEEE-EEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 75 RVTCLEFHPTNNHILL-SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~-t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
...+++++++| ++++ +...++.|.+|+..+..... ....+...+.+++++++ +.++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEe
Confidence 67899999999 5677 54678899999976544322 21234456889999998 77666655 889999998765432
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
.+.... ...+..++++++++++++...++.|.+|+..+..... ........+..+++++ +++++++.
T Consensus 101 -~~~~~~--------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~-~g~l~v~~ 167 (270)
T 1rwi_B 101 -VLPFDG--------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LPFTGLNDPDGVAVDN-SGNVYVTD 167 (270)
T ss_dssp -ECCCCS--------CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---CCCCSCCSCCCEEECT-TCCEEEEE
T ss_pred -eeecCC--------cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---eccccCCCceeEEEeC-CCCEEEEE
Confidence 221111 1238899999999988877788899999765543221 1112223578899999 88888877
Q ss_pred eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 234 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
..++.|.+||...... ..........+..++++++|.++++...++.|.+|+..
T Consensus 168 ~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp GGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CCCCEEEEEecCCCce--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 7788999999865322 11111233668899999999877777778889999874
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=4e-13 Score=117.33 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=141.9
Q ss_pred ccCccEEEEEEe-CCCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 71 YHSRRVTCLEFH-PTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 71 ~h~~~V~~~~~~-~~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
+|...+.+++++ +++ +++++... ++.|.+||. ++.....+...+...+.+++++++ ++++++...++.|.+||..
T Consensus 74 ~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp TCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT
T ss_pred ccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCC
Confidence 355678999995 666 66666643 789999994 455555554445567899999998 7888777778999999964
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecC--CCceEEEEEcCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK--GSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 226 (449)
++....+.... ....+..++++++++++++...++.|++||.... .. ...... ...+..+++++ +
T Consensus 151 -g~~~~~~~~~~-------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~---~~~~~~g~~~~p~~i~~d~-~ 217 (286)
T 1q7f_A 151 -GNVLHKFGCSK-------HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL---RQIGGEGITNYPIGVGINS-N 217 (286)
T ss_dssp -SCEEEEEECTT-------TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE---EEESCTTTSCSEEEEEECT-T
T ss_pred -CCEEEEeCCCC-------ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EE---EEEccCCccCCCcEEEECC-C
Confidence 55554443211 1123889999999998888888999999997532 11 112111 24688999999 8
Q ss_pred CCEEEEEeCCC-eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 227 PELLLSCGNDH-FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 227 ~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
++++++...++ .|.+||... +....+........+.+++++|+|+++++ +.++.|++|++..
T Consensus 218 G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 88888888776 999999642 22222222122334789999999987666 6799999999854
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=1.5e-12 Score=117.46 Aligned_cols=284 Identities=13% Similarity=-0.039 Sum_probs=172.9
Q ss_pred cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----------CCCeEEEEeCCCCceeeeeecC-CCCCCC
Q 013086 97 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVN-PNGWHG 165 (449)
Q Consensus 97 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~~~~~~ 165 (449)
.|.++|..+++....+..+ ..+ .++++|+ +++++++. .++.|.+||..+.+.+..+... .....
T Consensus 48 ~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~- 122 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGG-FLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD- 122 (373)
T ss_pred EEEEEECCCCeEEEEecCC-CCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-
Confidence 7899999998877766432 222 9999999 88888875 3678999999998888877654 11100
Q ss_pred CCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
.......++|+|++++|+++.. ++.|.++| .+++..... . ... .++.+.|.....+++.+.||.+.++|
T Consensus 123 --~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i-~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 123 --VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--L-SSP---TCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred --cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--c-CCC---ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 0012568899999999999874 57899999 887654220 1 111 12445553456677777899999999
Q ss_pred ccCCCCCCceee---cCCCCc-EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCcccee-cC---CCC-cccccee
Q 013086 244 IRRLEAGSSLCD---LPHKRV-VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH-SH---DFN-RHLTPFR 314 (449)
Q Consensus 244 ~~~~~~~~~~~~---~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~---~~~-~~~~~~~ 314 (449)
. +++....... .....+ .....+.+++..++..+.++.+.+.|+..+.... ...+.. .. ... .......
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~ 271 (373)
T 2mad_H 194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE-eeeeeecCCcccccceecCceEe
Confidence 8 5443211110 011112 2335567766665555578899999997553210 000000 00 000 0000112
Q ss_pred eeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc-EEeecC--CCeEEEE
Q 013086 315 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLASGS--SRSIFIW 391 (449)
Q Consensus 315 ~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~s--dg~i~iw 391 (449)
+.++|+.....+.. ... ...-.....+.|.++|+.+++.+.++.... ....+ +|+|||+ +++++. ++.|.+|
T Consensus 272 ~~~s~d~~~lyV~~-~~~-~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i-~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 272 VAYLKSSDGIYLLT-SEQ-SAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAI-SVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred EEECCCCCEEEEEe-ccC-CcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeE-EECCCCCeEEEEEcCCCCeEEEE
Confidence 44566532111111 000 000000124679999999999999986553 45666 8999999 677765 7999999
Q ss_pred cCCCchhhhh
Q 013086 392 RPKEKSELVE 401 (449)
Q Consensus 392 ~~~~~~~~~~ 401 (449)
|+.+++.+..
T Consensus 347 D~~t~~vv~~ 356 (373)
T 2mad_H 347 DAGAGDQDQS 356 (373)
T ss_pred ECCCCCEEee
Confidence 9999998876
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=4.3e-13 Score=115.85 Aligned_cols=189 Identities=10% Similarity=0.036 Sum_probs=143.3
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccC-CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 165 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 165 (449)
++|++++.++.|.+||.++++.+..+. .+. ..+.++.++|+ +++++ +.++.|..||. +++.+..+.....
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pd-G~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~---- 76 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKA-GEILF--SYSKGAKMITR-DGRELWNIAAPAG---- 76 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTT-SCEEE--ECBSEEEEECT-TSCEEEEEECCTT----
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCC-CCEEE--eCCCCEEEECC-CCCEEEEEcCCCC----
Confidence 689999999999999999999888874 343 57899999998 88887 45788999999 8998888875321
Q ss_pred CCcccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCccceEEeec---CCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 166 PRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHR---KGSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
..+.++.+.++++++++.+. ++.+..+|. +++.+........ .......+++.+ +++++++...++.|..
T Consensus 77 ----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 77 ----CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE 150 (276)
T ss_dssp ----CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred ----ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence 13788899999999999887 788888886 4443322211111 111344567788 9999999999999999
Q ss_pred EEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 013086 242 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 294 (449)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (449)
||.. ++. +..+.....+.++.+.++|+++++++.++.|..+|..+|+.+
T Consensus 151 ~d~~-G~~---~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 151 IAPN-GQL---LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp ECTT-SCE---EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred ECCC-CCE---EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 9986 443 333333345667888999999999988889999999988763
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=2.4e-14 Score=131.32 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=128.4
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeE-------------------EEEeeCCCCeEEEE-
Q 013086 77 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN-------------------IRFNPTNDGTVYAA- 136 (449)
Q Consensus 77 ~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~s~- 136 (449)
..+.|+|+| +.|+.++.++.|.+||+.++...... ..+...... +.|+|+ ++.++.+
T Consensus 84 ~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~ 160 (396)
T 3c5m_A 84 FGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAE 160 (396)
T ss_dssp TTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHH
T ss_pred ccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC-Ccceeeee
Confidence 347899999 57777777889999999887655444 333332222 345666 5555443
Q ss_pred ----eCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCC------CeEEEEECCCCCCcc
Q 013086 137 ----SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNF------GFLYLVDARTNSRSG 205 (449)
Q Consensus 137 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~ 205 (449)
..+..|.+||+.+++........ ..+..+.|+| ++..|+..+.+ ..|.+||+.......
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~~~----------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQDT----------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEEES----------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred eccCCCcceEEEEECCCCcEEeeccCC----------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 35678999999988765544321 1278899999 78877666543 368889987654221
Q ss_pred ceEEeecCCCceEEEEEcCCCCCEEEEEeCC-----CeEEEEEccCCCCCCceeecCCCCcEEEEEEcC-CCCEEEEee-
Q 013086 206 EAILIHRKGSKVVGLHCNPIQPELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTS- 278 (449)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~- 278 (449)
+ ..+.....+..++|+| +++.|+.++.+ +.|++||+.+++.. .+... .. .. +.|+| +|++|++++
T Consensus 231 -l-~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~--~~-~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 231 -I-KEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVM--PP-CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp -S-SCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEEC--CS-EE-EEEECSSSSEEEEEEC
T ss_pred -e-eccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeC--CC-CC-CCccCCCCceEEEecC
Confidence 1 1111122578899999 88877766543 45999999764432 12211 12 33 89999 999888754
Q ss_pred ---------------CCCcEEEEeCCCCCC
Q 013086 279 ---------------QDNRLRIWDSIFGNL 293 (449)
Q Consensus 279 ---------------~dg~i~vwd~~~~~~ 293 (449)
.+..|.+||+.+++.
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBC
T ss_pred CcceeeccccccccCCCCcEEEEecccCce
Confidence 347899999988764
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=7e-13 Score=118.01 Aligned_cols=304 Identities=12% Similarity=0.032 Sum_probs=186.0
Q ss_pred EEEeCCCCcEEEEEcC----CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----------CCCeEEE
Q 013086 79 LEFHPTNNHILLSGDK----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSC 144 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~v~i 144 (449)
....|++.+++++-.. ++.|.+.|..+.+.+..+..+.. + . ++++|+ +++++++. .++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC-CCEEEEEcccccccccCCCCCEEEE
Confidence 3446888555554433 67999999999998888754333 3 4 999999 88777765 3678999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEE
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 222 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (449)
||..+++.+..+....... .........++++|||++++++.. ++.|.++|+.+.+....+ . .. + . .. +
T Consensus 114 iD~~t~~v~~~I~v~~g~r--~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~--v~-g-~-~~-~ 184 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPR--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-D--VP-D-C-YH-I 184 (386)
T ss_dssp ECTTTCCEEEEEEETTCCC--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-E--CC-S-E-EE-E
T ss_pred EECCCCeEEEEEECCCccc--cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-E--CC-C-c-ce-e
Confidence 9999999988887643110 000112668999999999998864 689999999998765432 1 11 1 1 12 2
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccC-CCCCCce-eec-CCCCcE-EEEEEc-CCCCEEEEeeCCCcEEEEeCCCCCC--CC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRR-LEAGSSL-CDL-PHKRVV-NSAYFS-PSGSKILTTSQDNRLRIWDSIFGNL--DS 295 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~-~~~~~v-~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~--~~ 295 (449)
.|.....+++.+.||.+.+.++.. ++..... ..+ ....++ ....|. ++|++++ .+.+|.+.+.|+.++.. ..
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 242556677778889988888865 2221000 001 111222 124664 5776555 55589999999976542 11
Q ss_pred CCcccee---cCCCCccccceeeeeccCCCCCceEEEcceecccCCCC---CCcceEEEECCCceEEEEEecCccceece
Q 013086 296 PSREIVH---SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDITTGQLVAEVMDPNITTISP 369 (449)
Q Consensus 296 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 369 (449)
+...... ...+. ......+.++++.....++..... -++ ..++|.+.|+.+++.+.++.... ....
T Consensus 264 ~~~~~~~~~~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~-----~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~ 335 (386)
T 3sjl_D 264 AVEALTEAERADGWR-PGGWQQVAYHRALDRIYLLVDQRD-----EWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDS 335 (386)
T ss_dssp CEESSCHHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECC-----TTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECE
T ss_pred ceecccccccccccc-CCCcceeeECCCCCeEEEEecccc-----ccccCCCCCEEEEEECCCCeEEEEEECCC--Ccce
Confidence 1100000 00000 000012344554322222111000 011 23679999999999999987653 5666
Q ss_pred eeecCCCCc-EEee-cC-CCeEEEEcCCCchhhhhhhcc
Q 013086 370 VNKLHPRDD-VLAS-GS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 370 v~~~~~~~~-~l~s-~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+ ++++|++ +|++ .. ++.|.++|..+++.+..+...
T Consensus 336 l-avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 336 I-NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp E-EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred E-EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 7 8999996 5555 34 899999999999988776643
No 191
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.56 E-value=7.9e-13 Score=119.87 Aligned_cols=298 Identities=12% Similarity=0.044 Sum_probs=184.6
Q ss_pred CCCCcEEEEEcCC----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----------CCCeEEEEeCC
Q 013086 83 PTNNHILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLE 148 (449)
Q Consensus 83 ~~~~~~l~t~~~d----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~ 148 (449)
+++.+++++...+ +.|.++|..+.+.+..+..+. .+ .++++|+ +++++++. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3554444444433 799999999999888885443 33 8999999 77777775 36789999999
Q ss_pred CCceeeeeecC-CCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLALSLMNVN-PNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
+++.+..+... .... ........+.++||+++++++.. ++.|.++|+.+.+....+ .. . .. ....|.
T Consensus 158 t~~vv~~I~v~g~~r~---~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I-~v--~--g~--~~~~p~ 227 (426)
T 3c75_H 158 TFLPIADIELPDAPRF---LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML-DV--P--DC--YHIFPA 227 (426)
T ss_dssp TCCEEEEEEETTCCCC---CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-EC--C--SE--EEEEEE
T ss_pred CCcEEEEEECCCcccc---ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE-Ec--C--Cc--eeeccC
Confidence 99998888764 1110 00012567899999999999864 578999999998765432 11 1 11 223332
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCce-eec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc-cce
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAGSSL-CDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR-EIV 301 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~ 301 (449)
....+++.+.||.+.+.+..+.+..... ..+ +.......+.|.+++..++..+..+.+.+.|+..+....... ...
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 3456666777888888887432221000 011 111111235789998888888888999999986543210000 000
Q ss_pred ecCCCCc---cccceeeeeccCCCCCceEEEcceecccCCCC---CCcceEEEECCCceEEEEEecCccceeceeeecCC
Q 013086 302 HSHDFNR---HLTPFRAEWDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 375 (449)
Q Consensus 302 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~ 375 (449)
....... ......+.++|+.....+.. ... . .++ ..+.|.++|+.+.+.+.++.... ....+ +|+|
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~-~~~-~---~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gi-a~sp 379 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLV-DQR-D---EWKHKAASRFVVVLNAETGERINKIELGH--EIDSI-NVSQ 379 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEE-EEC-C---TTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEE-EECC
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEe-ccc-c---cccccCCCCEEEEEECCCCeEEEEEECCC--CcCeE-EEcc
Confidence 0000000 00001245666532111111 100 0 011 24689999999999999987543 45666 8999
Q ss_pred CCc-EEeecC--CCeEEEEcCCCchhhhhh
Q 013086 376 RDD-VLASGS--SRSIFIWRPKEKSELVEQ 402 (449)
Q Consensus 376 ~~~-~l~s~s--dg~i~iw~~~~~~~~~~~ 402 (449)
||+ +++++. ++.|.++|+.+++.+..+
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 998 777765 799999999999988775
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.6e-13 Score=118.57 Aligned_cols=238 Identities=8% Similarity=0.017 Sum_probs=159.2
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
+++|++++.++.|.+||.++|+.+..+..+.. ..+.++.++|+|++++ +.++.|..||. +++.+... .
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~-~ 72 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI-A 72 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTT--------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE-E
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE-c
Confidence 67899999999999999999999988876431 1277889999999888 45778999999 66654332 1
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEccCCCCCCceeec----CCCCcEEEEEEcCCCCEEEEeeCCCcEE
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLR 284 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 284 (449)
. .....+.++.+.+ +++++++.+. ++.|..+|.. ++....+... .+......+.+.++|++|++...++.|.
T Consensus 73 ~-~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 73 A-PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp C-CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred C-CCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence 1 1123688899999 9999999887 7788888753 2222222111 1112345567899999999999999999
Q ss_pred EEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCcc
Q 013086 285 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 364 (449)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 364 (449)
.||.. |+.+..... . ..+..+...++ |.+++ .+..++.|..+|..+|+.+.++.....
T Consensus 150 ~~d~~-G~~~w~~~~-------~--~~~~~~~~~~~---------g~~~v---~~~~~~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 150 EIAPN-GQLLNSVKL-------S--GTPFSSAFLDN---------GDCLV---ACGDAHCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp EECTT-SCEEEEEEC-------S--SCCCEEEECTT---------SCEEE---ECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred EECCC-CCEEEEEEC-------C--CCccceeEcCC---------CCEEE---EeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence 99987 765321110 0 11223344444 55554 355567899999999999999974321
Q ss_pred -----ceeceeeecCCCCcEEeecCCC---------eEEEEcC-CCchhhhhhhcc
Q 013086 365 -----TTISPVNKLHPRDDVLASGSSR---------SIFIWRP-KEKSELVEQKEE 405 (449)
Q Consensus 365 -----~~v~~v~~~~~~~~~l~s~sdg---------~i~iw~~-~~~~~~~~~~~~ 405 (449)
..+..+ ...++|.++++..+| ..+++.+ .+|+.+.++...
T Consensus 208 ~~~~l~~~~~~-~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 208 EGVQLFFVAQL-FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp BSCCCSEEEEE-EECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred CCccccccccc-eEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 124444 677889888886322 3345555 456655554443
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=9.6e-13 Score=130.65 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=163.6
Q ss_pred eCCCCcEEEEEcCCC--cEEEEeCc-----CCeeeEEE-----ecccCCceeEEEEeeCCCCeEEEEeCC-----CeEEE
Q 013086 82 HPTNNHILLSGDKKG--QVGVWDFY-----KVSEKIVY-----GNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSC 144 (449)
Q Consensus 82 ~~~~~~~l~t~~~d~--~i~vwd~~-----~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~i 144 (449)
+|+|++++.+....+ .-.+|... .+.....+ ..+|...+..+.|+|+ +++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT-SSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEE
Confidence 488855444443333 35556543 33322221 1234447889999999 8888776543 36999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC--------------eEEEEECCCCCCccceEEe
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--------------FLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~ 210 (449)
||+.+++.+.... .. ..+..++|+|| +.|+.+..++ .|++|++.++.....+...
T Consensus 194 ~dl~tg~~~~~~~-~~---------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 194 VGVADGKPLADEL-KW---------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EETTTCCEEEEEE-EE---------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EECCCCCCCCccC-CC---------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 9999998754311 10 01357889999 9888877654 3899999776532222111
Q ss_pred -ecCCCceEEEEEcCCCCCEEEEEeCCC-----eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC----
Q 013086 211 -HRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---- 280 (449)
Q Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 280 (449)
..+...+..+.|+| ++++|+..+.++ .|++||+.++..........+...+... ++|+|+.|+..+.+
T Consensus 263 ~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 263 TPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp CTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred cCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 11222588999999 999888777544 8999999764211011122333444444 34889988887763
Q ss_pred CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECC-CceEEEEE
Q 013086 281 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEV 359 (449)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~ 359 (449)
+.|.+||+.++. .....+.... .... ..+.|+ . +.+++ +...++..+||.+. ++.....+
T Consensus 341 ~~l~~~d~~~~~--~~~~~l~~~~--~~~l--~~~~~~-~---------~~lv~---~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 341 KKIVRVDLSGST--PRFDTVVPES--KDNL--ESVGIA-G---------NRLFA---SYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp CEEEEEECSSSS--CEEEEEECCC--SSEE--EEEEEE-B---------TEEEE---EEEETTEEEEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCCc--cccEEEecCC--CCeE--EEEEEE-C---------CEEEE---EEEECCEEEEEEEeCCCCceeec
Confidence 459999987642 1011111111 1110 122332 1 22222 34555655555443 46666666
Q ss_pred ecCccceeceeeecCCCCcEEee----cC-CCeEEEEcCCCch
Q 013086 360 MDPNITTISPVNKLHPRDDVLAS----GS-SRSIFIWRPKEKS 397 (449)
Q Consensus 360 ~~~~~~~v~~v~~~~~~~~~l~s----~s-dg~i~iw~~~~~~ 397 (449)
..+....+..+ +++|++..|+. .. .+.|++||+.+++
T Consensus 402 ~~~~~~~v~~~-~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 402 SLPGIGSASGL-SGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BCSSSCEEEEE-ECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred cCCCCeEEEEe-ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 65444566666 79999876652 23 4899999998876
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=7.9e-12 Score=111.66 Aligned_cols=209 Identities=10% Similarity=0.066 Sum_probs=146.3
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC----Ce
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GT 141 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~ 141 (449)
...+..+...+.+++|+++| ++++++..++.|.+||..++...... ..+...+.+++|+|+ ++++++...+ +.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD-GRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-SCEEEEECTTSSSCCE
T ss_pred eEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-CcEEEEeCCCCCCCce
Confidence 45666777788999999999 67888888999999999877655443 246678999999998 7777776666 68
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecCCC
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGS 215 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~ 215 (449)
|.+||..++.....+.... ....+..++++|+++++++... .+.|..+|..+.+.. .. . ....
T Consensus 114 i~~~d~~~~~~~~~~~~~~-------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~--~~~~ 182 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLS-------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI-I--QNIS 182 (333)
T ss_dssp EEEECTTSCSCEEEECSSS-------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EE-E--EEES
T ss_pred EEEEeCCCCEEEEEEccCc-------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-Ee-e--cCCC
Confidence 9999998876543332110 1124889999999987777654 366777776654322 11 1 1122
Q ss_pred ceEEEEEcCCCCCEE-EEEeCCCeEEEEEccCC-CCCCc-----eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 216 KVVGLHCNPIQPELL-LSCGNDHFARIWDIRRL-EAGSS-----LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
.+..++|+| +++.| ++.+.++.|.+||+.+. ..... .........+..++++++|+++++...++.|.+||.
T Consensus 183 ~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 183 VANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp SEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred cccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 578999999 88755 55556789999998632 11111 111111246788999999998888777889999998
Q ss_pred C
Q 013086 289 I 289 (449)
Q Consensus 289 ~ 289 (449)
.
T Consensus 262 ~ 262 (333)
T 2dg1_A 262 R 262 (333)
T ss_dssp T
T ss_pred C
Confidence 4
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=4.8e-12 Score=112.79 Aligned_cols=214 Identities=11% Similarity=0.089 Sum_probs=147.0
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe-eeEEEe--------cccCCceeEEEEeeCCCCeEEEEe-CCC
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG--------NIHSCIVNNIRFNPTNDGTVYAAS-SDG 140 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~-~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~-~dg 140 (449)
++......++++++| +++++...++.|++|+..... .+..+. .++......++++|+++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 445678999999999 588888889999999987653 333332 234557899999994277777776 689
Q ss_pred eEEEEeCCCCceeeeeecCCCC-CCCCCcccceeEEEEecC-CCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 141 TVSCTDLETGLALSLMNVNPNG-WHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
.|++|+ .++..+..+...... ............++++|+ +.++++...++.|++||..+++....+ ........+.
T Consensus 167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-~~~~~~~~~~ 244 (329)
T 3fvz_A 167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-KHASFGRNVF 244 (329)
T ss_dssp EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CCTTTTTCEE
T ss_pred eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-eccccCCCcc
Confidence 999999 556666555322111 000112234789999998 677777778899999999866544221 2223445688
Q ss_pred EEEEcCCCCCEEEEE-------eCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 219 GLHCNPIQPELLLSC-------GNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.++++| +..+++. ..+..|++||..+++....+.. ..+...+..|+++|+|.++++...++.|++|++.
T Consensus 245 ~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 245 AISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 888887 3333332 2345899999876544222211 1355678999999999888888889999999985
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=5.9e-11 Score=104.06 Aligned_cols=241 Identities=9% Similarity=0.007 Sum_probs=160.3
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEE
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 194 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 194 (449)
.+...+.++++.++ +.++++...++.|.+||.. ++.. .+..... ...+.++++.+++.++++...++.|.
T Consensus 12 ~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~-------~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 12 NQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKIT-EYPLPTP-------DAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp SSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEE-EEECSST-------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeE-EecCCcc-------cCceeeEEECCCCCEEEeCCCCCeEE
Confidence 35567899999998 7777766668899999988 5543 2222111 12388999999999888887789999
Q ss_pred EEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEE
Q 013086 195 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 274 (449)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 274 (449)
.||.. +.. ...........+..+++.+ ++.++++...++.|..||. ++.. ..+........+..++++++|.++
T Consensus 82 ~~~~~-g~~--~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 82 RITKK-GII--KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp EECTT-SCE--EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTSCEE
T ss_pred EECCC-CcE--EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcCCCCEE
Confidence 99976 221 1112222344689999999 8888888777889999998 3222 112111244568999999999888
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 275 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
++...++.|..||. +++... . ... .....+..++++++ |.+.+ +...++.|.+||. +++
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~----~-~~~--~~~~~~~~i~~~~~---------g~l~v---~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE----F-KIP--TPASGPVGITKGND---------DALWF---VEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE----E-ECS--STTCCEEEEEECTT---------SSEEE---EETTTTEEEEECT-TCC
T ss_pred EEeCCCCEEEEEcC-CCcEEE----e-eCC--CCCCcceeEEECCC---------CCEEE---EccCCceEEEECC-CCc
Confidence 87777889999998 555321 0 000 11122345667766 33333 2334678999998 776
Q ss_pred EEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 355 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 355 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
............+..+ +++++|+++++.. ++.|.+|+.
T Consensus 215 ~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAI-TAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECSSTTCCEEEE-EECSTTCEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCCCceeE-EECCCCCEEEeccCCceEEEECC
Confidence 5432222223456667 8999999877765 799999998
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=3.1e-11 Score=106.79 Aligned_cols=209 Identities=10% Similarity=0.081 Sum_probs=135.3
Q ss_pred eeccCccEEEEEEeCCCCcEEEE-------EcCCCcEEEEeCcCCeeeEEEe---cccCCceeEEEEeeCCCCeEEEEeC
Q 013086 69 IRYHSRRVTCLEFHPTNNHILLS-------GDKKGQVGVWDFYKVSEKIVYG---NIHSCIVNNIRFNPTNDGTVYAASS 138 (449)
Q Consensus 69 ~~~h~~~V~~~~~~~~~~~~l~t-------~~~d~~i~vwd~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~ 138 (449)
+...-....+++|+++| +++++ +..++.|.+||..++....... .++...+.+++++++ +..++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~-~g~l~v~~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD-ANQLFVADM 90 (314)
T ss_dssp EECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS-SSEEEEEET
T ss_pred hhccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC-CCcEEEEEC
Confidence 34444567899999988 67777 5678899999987766543321 124567899999986 355555555
Q ss_pred CCeEEEEeCCCCceeee-eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---------------CeEEEEECCCCC
Q 013086 139 DGTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------------GFLYLVDARTNS 202 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~ 202 (449)
.+.|.+||.. ++.... ..... ......+..++++++++++++...+ +.|..||.. ++
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSE-----GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTT-----SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred CCCEEEEeCC-CCEEEEEeccCC-----CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence 5589999988 665433 21110 0112247899999999888777654 577778765 33
Q ss_pred CccceEEeecCCCceEEEEEc----CCCCCEE-EEEeCCCeEEEEEcc-CCCCC--Cceeec-CCC-CcEEEEEEcCCCC
Q 013086 203 RSGEAILIHRKGSKVVGLHCN----PIQPELL-LSCGNDHFARIWDIR-RLEAG--SSLCDL-PHK-RVVNSAYFSPSGS 272 (449)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~----~~~~~~l-~~~~~dg~i~iwd~~-~~~~~--~~~~~~-~~~-~~v~~~~~~~~~~ 272 (449)
.. ...........++++ | +++.+ ++...++.|.+||+. .+... ..+... .+. ..+..++++++|+
T Consensus 164 ~~----~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 164 MI----QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EE----EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred EE----EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 21 111112246889999 8 77554 554567899999976 22110 112222 222 5678899999998
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q 013086 273 KILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~ 291 (449)
++++...++.|.+||..++
T Consensus 239 l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEEEETTTEEEEECTTCB
T ss_pred EEEEEcCCCEEEEEcCCCC
Confidence 8887777888888887544
No 198
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=1.5e-11 Score=121.62 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=121.6
Q ss_pred CCCCcEEEEEcCCC----cEEEEeCcCCeeeEEE-----ecccCCceeEEEEeeCCCCeEEEEeCCC-----eEEEEeCC
Q 013086 83 PTNNHILLSGDKKG----QVGVWDFYKVSEKIVY-----GNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLE 148 (449)
Q Consensus 83 ~~~~~~l~t~~~d~----~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 148 (449)
|+|.+++.+-...+ .+.+.+...+.....+ ..+|...+..++|+|+ +++|+.++.++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECC
Confidence 77855444443322 3344444343332222 1234446889999999 88887765533 89999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe----------------EEEEECCCCCCccceEE-ee
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF----------------LYLVDARTNSRSGEAIL-IH 211 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~-~~ 211 (449)
+++......... .+..++|+||++.|+.+..++. |++|++.++........ ..
T Consensus 160 tg~~~~~~~~~~----------~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 160 GAKELPDVLERV----------KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp TTEEEEEEEEEE----------CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CCCCCcccccCc----------ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 998765322110 1567999999999999887665 99999987653322211 11
Q ss_pred cCCCceEEEEEcCCCCCEEEEEeC-----CCeEEEEEccC------CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 212 RKGSKVVGLHCNPIQPELLLSCGN-----DHFARIWDIRR------LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
.+...+..+.|+| ++++|+..+. +..|++||+.+ +.. .......+...+.. .|+|+|..|+..+..
T Consensus 230 ~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 230 DEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNR 306 (710)
T ss_dssp TCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECT
T ss_pred CCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECC
Confidence 2334578999999 9998887765 56899999975 321 12222234444444 488888887766543
Q ss_pred ----CcEEEEeCCC
Q 013086 281 ----NRLRIWDSIF 290 (449)
Q Consensus 281 ----g~i~vwd~~~ 290 (449)
+.|.+||+.+
T Consensus 307 ~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 307 HSPNYRLINIDFTD 320 (710)
T ss_dssp TCTTCEEEEEETTS
T ss_pred CCCCCEEEEEeCCC
Confidence 2466666644
No 199
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=6.2e-12 Score=113.04 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=122.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCC---C--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----------
Q 013086 74 RRVTCLEFHPTNNHILLSGDKK---G--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------- 138 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d---~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------- 138 (449)
..+..++|+|+|. .|+..+.+ + .|.+|++.++....... +.. +..+.|+|+ ++.|+.++.
T Consensus 59 ~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNED-SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTT-SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCC-CCEEEEEEccCCCcCCcEE
Confidence 4688899999994 56655433 3 47788888776555442 233 999999999 887777763
Q ss_pred -----------------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---------Ce
Q 013086 139 -----------------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------GF 192 (449)
Q Consensus 139 -----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~ 192 (449)
...|.+||+.+++.+..+.. . . +..++|+|++ +++++..+ ..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~---------~~~~~~spdg-~~~~~~~~~~~~~~~~~~~ 201 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R---------FSSGIWHRDK-IVVNVPHREIIPQYFKFWD 201 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T---------TCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C---------cccccCCCCe-EEEEEeccccccccccccc
Confidence 25799999998876344433 1 1 7789999999 77777543 24
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC--------CeEEEEEccCCCCCCceeec-CCCCcEE
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIRRLEAGSSLCDL-PHKRVVN 263 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~-~~~~~v~ 263 (449)
|.++| ++.. ..+ ..+ ..+..+ +| +++.|+.++.+ ..|++|| +++ ..... .+...+.
T Consensus 202 l~~~d--~~~~-~~l-~~~---~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~ 266 (347)
T 2gop_A 202 IYIWE--DGKE-EKM-FEK---VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVG 266 (347)
T ss_dssp EEEEE--TTEE-EEE-EEE---ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEE
T ss_pred EEEeC--CCce-EEe-ccC---cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccC
Confidence 55555 3321 111 112 345544 88 88888777644 3688888 322 22222 4567788
Q ss_pred E-EEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 264 S-AYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 264 ~-~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
. +.|+ ++ ++++++.++.++|| +.++
T Consensus 267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 267 QAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred CccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 6 9999 88 88899999999999 8744
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=2e-11 Score=121.20 Aligned_cols=252 Identities=9% Similarity=-0.052 Sum_probs=148.5
Q ss_pred cCccEEEEEEeCCCCcEEEEEc-CCC----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC------
Q 013086 72 HSRRVTCLEFHPTNNHILLSGD-KKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG------ 140 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~-~d~----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------ 140 (449)
|...+..++|||||. +||.++ .+| .|++||+.++....... +...+..++|+|+ . .|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-S-EEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-C-EEEEEEecCcccccc
Confidence 444788999999995 555543 333 59999999987654322 2233467899998 4 555555444
Q ss_pred --------eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEECCCCCCc-cc
Q 013086 141 --------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRS-GE 206 (449)
Q Consensus 141 --------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~ 206 (449)
.|++|++.++.....+..... .....+..+.|+|||++|+....+ ..|++||+.++... ..
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATP-----ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCT-----TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccC-----CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 389999987763222211111 111127889999999988887644 38999999876211 11
Q ss_pred eEEeecCCCceEEEEEcCCCCCEEEEEeCC----CeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCC
Q 013086 207 AILIHRKGSKVVGLHCNPIQPELLLSCGND----HFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDN 281 (449)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 281 (449)
........+.... +| ++..|+..+.+ +.|.+||+.+.. ....... .+...+..+.|+ ++.++++...|+
T Consensus 311 --~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg 384 (741)
T 1yr2_A 311 --ALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDA 384 (741)
T ss_dssp --EEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT
T ss_pred --EecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 2222222344443 46 77777777653 459999987642 1111222 344567778887 566778888898
Q ss_pred cEEEEeCC-CCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCce
Q 013086 282 RLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 354 (449)
Q Consensus 282 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~ 354 (449)
..+||.+. ++... ....+........+.++|+.....+... +....++|++||+.+++
T Consensus 385 ~~~l~~~~~~g~~~-------~~l~~~~~~~v~~~~~s~d~~~l~~~~s--------s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 385 KSQVLAFDLDGKPA-------GAVSLPGIGSASGLSGRPGDRHAYLSFS--------SFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEETTSCEE-------EECBCSSSCEEEEEECCBTCSCEEEEEE--------ETTEEEEEEEEETTTTE
T ss_pred EEEEEEEeCCCCce-------eeccCCCCeEEEEeecCCCCCEEEEEEc--------CCCCCCEEEEEECCCCc
Confidence 87777654 22211 1111111112235667776422222221 34566889999998887
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1e-12 Score=117.41 Aligned_cols=174 Identities=11% Similarity=0.054 Sum_probs=125.7
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe----------eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 144 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 144 (449)
.++.+++++.. .++++|+.+ .+++|++.... ..... ..+.. |+.++| + +.+|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d-~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--H-GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--E-TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--C-CCEEEEE-cCCcEEE
Confidence 58999999998 588888877 46679876433 11112 23666 999999 6 8899998 7899999
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcC
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 224 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (449)
||+.+............ .+.++.+.+. .+++++.||.|.+||+..+... .. ...|++++|+|
T Consensus 111 ~dv~sl~~~~~~~~~~~---------~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~~---~~~Vs~v~WSp 172 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEK---------PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----QL---AQNVTSFDVTN 172 (388)
T ss_dssp EESSSTTCEEEEEECSS---------CEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----EE---EESEEEEEECS
T ss_pred EEchhhhccCccceeec---------ceeeEEecCC--CEEEEECCCCEEEEEccCCccc----cc---cCCceEEEEcC
Confidence 99987664444333222 2566665544 3888999999999999976642 11 12699999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCC--CCcee-------ecCCCCcEEEEEEcCCCCEEEEe
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEA--GSSLC-------DLPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
++ ++.|..||.+++|+...... ...+. ..+|...|.+|.|.+++.+|++-
T Consensus 173 -kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 173 -SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 77 78899999999998875442 11221 01367899999999999888763
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=3.9e-11 Score=109.81 Aligned_cols=204 Identities=11% Similarity=-0.039 Sum_probs=139.4
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC--eEEEEeCCCCc
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGL 151 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~ 151 (449)
.....|+|++++ +++++...++.|++||..++....... . ..... ++|+++ ++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~-~-~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHP-G-FKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEE-T-CCBCB-CEECTT-SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeec-c-CCCCc-eeEecC-CCcEEEEecCCCceEEEEEcCCCc
Confidence 468899999998 688887778999999998876655543 2 23334 999999 88888888765 79999987665
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE---eecCCCce-E-EEEEcCCC
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL---IHRKGSKV-V-GLHCNPIQ 226 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~ 226 (449)
....+..... .....+.+++++|++..|+++..++.|+.||..+.... ... .......- . .++|+|.+
T Consensus 206 ~~~~~g~~~~-----~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~--~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 206 APTRIGQLGS-----TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT--LIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp CEEEEEECCT-----TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--EEEECCCCSCCCCSSCCEEEEETTT
T ss_pred eeEEeeeccc-----hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--EEecccccCCCCCCccccEEEeCCC
Confidence 4333311000 01123788999996666666888899999999876421 111 11111111 3 89999944
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeecCC---------------CCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---------------KRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
+.++++-..++.|+.|+.... .....++ -.....++++|+|+++++-+ .++.|+.|++.+
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 667777777889999987532 1111111 23478999999999777777 789999999876
Q ss_pred CCC
Q 013086 291 GNL 293 (449)
Q Consensus 291 ~~~ 293 (449)
+..
T Consensus 355 G~v 357 (409)
T 3hrp_A 355 GYV 357 (409)
T ss_dssp TEE
T ss_pred CEE
Confidence 653
No 203
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=3.4e-11 Score=105.59 Aligned_cols=206 Identities=9% Similarity=0.012 Sum_probs=137.2
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec---ccCCceeEEEEeeCCCCeEEEE----e-
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN---IHSCIVNNIRFNPTNDGTVYAA----S- 137 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~----~- 137 (449)
...+..+...+.+++++++| +++++...++.|.+||..++........ .....+.+++++|+ ++++++. +
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGID 138 (296)
T ss_dssp EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHH
T ss_pred eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccc
Confidence 34566677889999999999 6777777678999999977664433211 11235678999998 8887773 2
Q ss_pred ------------CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC-CCCCc
Q 013086 138 ------------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR-TNSRS 204 (449)
Q Consensus 138 ------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 204 (449)
..+.|..++.. ++... +.... .....++|+|+++.+++.+.++.|.+|++. .+...
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~---------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~ 207 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLSA-PIRDR---------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE 207 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEEE-EECCC---------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE
T ss_pred cccccccccccCCCcEEEEECCC-CCEEE-eecCC---------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc
Confidence 13456666655 44322 21111 126889999999988777888999999987 33320
Q ss_pred cceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEE-cCCCCEEEEeeCCCc
Q 013086 205 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYF-SPSGSKILTTSQDNR 282 (449)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~~l~~~~~dg~ 282 (449)
............+..+++++ +++++++. ++.|.+||.. + ..+..+ .+.. +.+++| +|+++.|++++.+ .
T Consensus 208 ~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g---~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~ 278 (296)
T 3e5z_A 208 YQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-G---DELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-E 278 (296)
T ss_dssp EEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-S---CEEEEEECSSC-CCEEEEESTTSCEEEEEETT-E
T ss_pred CCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-C---CEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-e
Confidence 11111122334567899999 88876666 7889999985 2 233323 2444 899999 5899989888876 4
Q ss_pred EEEEeCCCCCC
Q 013086 283 LRIWDSIFGNL 293 (449)
Q Consensus 283 i~vwd~~~~~~ 293 (449)
+.-++..+.++
T Consensus 279 l~~~~~~~~~~ 289 (296)
T 3e5z_A 279 FWSIETNVRGL 289 (296)
T ss_dssp EEEEECSCCBC
T ss_pred EEEEEcccccc
Confidence 55667766554
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=1.5e-11 Score=106.22 Aligned_cols=201 Identities=7% Similarity=-0.013 Sum_probs=141.9
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
...+.+++++++| +++++.. ++.|.+||..+..... +.......+..++++++ +.++++...++.|.+|+..+...
T Consensus 66 ~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~-~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 66 LYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTV-LPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEE-CCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSC
T ss_pred cCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEee-eecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCcee
Confidence 3467889999998 5666666 8899999987654332 22223367899999998 77777777788999997655433
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
...... ....+..++++++++++++...++.|.+||........ ........+..+++++ ++.++++
T Consensus 142 ~~~~~~---------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~-~g~l~v~ 208 (270)
T 1rwi_B 142 TVLPFT---------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDE-AGTVYVT 208 (270)
T ss_dssp EECCCC---------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECT-TCCEEEE
T ss_pred Eeeccc---------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECC-CCCEEEE
Confidence 221110 11237789999999977777778899999987654321 1111224688999999 8888888
Q ss_pred EeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 233 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
...++.|.+|+...... ......+...+.+++++++|+++++...++.|++|++...+
T Consensus 209 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ETTTSCEEEECTTCSCC--EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCcEEEEcCCCCcc--eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 77788999999864322 11111233568999999999988888889999999986543
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=6.7e-11 Score=116.35 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=124.6
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcC----CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC------
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDK----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG------ 140 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------ 140 (449)
+|...+..++|||||..++++.+. ...|++||+.+++...... +......++|+ + ++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-G-NEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-T-TTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-C-CCEEEEEEecCcccccc
Confidence 456679999999999543333332 3579999999987654322 22223678899 8 88888877764
Q ss_pred -------eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC----CCeEEEEECCCCCCccceEE
Q 013086 141 -------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN----FGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 141 -------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~ 209 (449)
.|++|++.++............ ........+.|+||+++|+.... ...|+++|+.++......
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-- 275 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIP----AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-- 275 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSG----GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE--
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCC----CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE--
Confidence 3999999876542222111110 00112678899999998866432 358999999876432222
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCC---CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC---cE
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RL 283 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i 283 (449)
........... +++.++.+++....+ +.|..+|+.+...........+...+. .|+++++.|+....++ .|
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 22222234443 555244444444443 679999998654311122234544454 8889888887766543 57
Q ss_pred EEEeCC
Q 013086 284 RIWDSI 289 (449)
Q Consensus 284 ~vwd~~ 289 (449)
++|++.
T Consensus 353 ~~~d~~ 358 (693)
T 3iuj_A 353 EQFDYE 358 (693)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 777765
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1.4e-09 Score=95.32 Aligned_cols=240 Identities=8% Similarity=-0.011 Sum_probs=158.0
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 195 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 195 (449)
....+.++++.++ +.++++...++.|.+||.. ++... +..... ...+..+++.+++.++++...++.|..
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~-------~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKE-FEVPTP-------DAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEE-EECSST-------TCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEE-EECCCC-------CCcceeEEECCCCCEEEEecCCCeEEE
Confidence 4567899999998 8777777678999999987 55433 322211 123889999999998887777889999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 275 (449)
||.. +... ..........+..+++.+ ++.++++...++.|..||.. ++.. .+........+..+++++++++++
T Consensus 88 ~d~~-g~~~--~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 88 LSKK-GGFT--EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp ECTT-SCEE--EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEE
T ss_pred ECCC-CCeE--EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEE
Confidence 9987 4321 112222234689999998 88888887778899999875 2221 121112345789999999999777
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceE
Q 013086 276 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 355 (449)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~ 355 (449)
+...++.|..||. +++... .... .....+..+.++++ |.+.. +....+.|.+||. +++.
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~----~~~~---~~~~~~~~i~~d~~---------g~l~v---~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEE----YPLP---TNAAAPVGITSGND---------GALWF---VEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EETTTTEEEEECT-TCCEEE----EECS---STTCCEEEEEECTT---------SSEEE---EETTTTEEEEECT-TCCE
T ss_pred EecCCCeEEEECC-CCcEEE----eeCC---CCCCCcceEEECCC---------CCEEE---EccCCCEEEEEcC-CCcE
Confidence 6666788999998 444311 1000 11122345666665 33333 2234567899998 5554
Q ss_pred EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 356 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 356 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
...........+..+ +++++|+++++.. ++.|..|+.
T Consensus 221 ~~~~~~~~~~~~~~i-~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 221 SEYDIPTPNARPHAI-TAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEECSSTTCCEEEE-EECSTTCEEEEETTTTEEEEECT
T ss_pred EEEECCCCCCCceEE-EECCCCCEEEeccCCCeEEEECC
Confidence 443222223455666 7999999777766 799999998
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=2.4e-10 Score=104.57 Aligned_cols=243 Identities=8% Similarity=-0.032 Sum_probs=154.5
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC--eEEE
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--FLYL 195 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i 195 (449)
.....|+|+++ ++++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------GGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETCC----------BCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccCC----------CCc-eeEecCCCcEEEEecCCCceEEE
Confidence 45789999998 7777777778999999998877665543211 134 89999999999988766 8999
Q ss_pred EECCCCCCccceEEeec-CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCcee---ecCCCCcE--EEEEEcC
Q 013086 196 VDARTNSRSGEAILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC---DLPHKRVV--NSAYFSP 269 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v--~~~~~~~ 269 (449)
|+..........-.... ....+.+++++| +...|+++..++.|+.||..+... ..+. ..+....- ..++|+|
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEET
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeC
Confidence 99876543211101112 334678899999 555555577788999999875432 1111 11121111 3899999
Q ss_pred C-CCEEEEeeCCCcEEEEeCCCCCCCCCCccceecC---CC-------CccccceeeeeccCCCCCceEEEcceecccCC
Q 013086 270 S-GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH---DF-------NRHLTPFRAEWDPKDPSESLAVIGRYISENYN 338 (449)
Q Consensus 270 ~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (449)
+ +.++++-..++.|+.|+.... .. ...-.. .. .....+..++++|+ |.+.+ +
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~-~~----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d---------G~lyv---a 339 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE-CE----WFCGSATQKTVQDGLREEALFAQPNGMTVDED---------GNFYI---V 339 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC-EE----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTT---------CCEEE---E
T ss_pred CCCEEEEEeCCCCEEEEEecCCC-EE----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCC---------CCEEE---E
Confidence 5 555566666889999987532 10 000000 00 01123456788887 44433 3
Q ss_pred CC-CCcceEEEECCCceEEEEEecC--------------ccceeceeeecCCCCcEEeecC-CCeEEEEcC
Q 013086 339 GA-ALHPIDFIDITTGQLVAEVMDP--------------NITTISPVNKLHPRDDVLASGS-SRSIFIWRP 393 (449)
Q Consensus 339 ~~-~d~~i~iwd~~~~~~~~~~~~~--------------~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~ 393 (449)
.. .++.|+.|++.++.... +.++ .......+ +++++|.++++-. ++.|+.+.+
T Consensus 340 d~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~gi-avd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDI-CYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEE-EECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEE-EEcCCCCEEEEECCCCeEEEEEe
Confidence 44 67889999988887543 3332 02335566 8999988888876 788888765
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=5e-11 Score=117.48 Aligned_cols=195 Identities=8% Similarity=-0.074 Sum_probs=118.2
Q ss_pred eCCCCcEEEEEcCCC--cEEEE--eCcCCeeeEEEe-----cccCCceeEEEEeeCCCCeEEE-----EeCCCeEEEEeC
Q 013086 82 HPTNNHILLSGDKKG--QVGVW--DFYKVSEKIVYG-----NIHSCIVNNIRFNPTNDGTVYA-----ASSDGTVSCTDL 147 (449)
Q Consensus 82 ~~~~~~~l~t~~~d~--~i~vw--d~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s-----~~~dg~v~iwd~ 147 (449)
+|+|++++.+....+ .-.|| +...+.....+. .+|...+..++|+|+ +++|+. |+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEEC
Confidence 377854444443332 34445 443443333221 245557999999999 888773 334568999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCe-------------EEEEECCCCCCccceEE-eecC
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF-------------LYLVDARTNSRSGEAIL-IHRK 213 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~-~~~~ 213 (449)
.+++........ . .....++|+||++.|+.++.+.. |++|++.++.....+.. ...+
T Consensus 155 ~tg~~~~~~~~~-----~----~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 155 DSGEWSKVDVIE-----G----GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp TTCCBCSSCCBS-----C----CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred CCCCCcCCcccC-----c----ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 998764111111 0 01267899999999999887665 99999988764322221 2223
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCC----eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee---CCCcEEEE
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDH----FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS---QDNRLRIW 286 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vw 286 (449)
...+..+.|+| ++++|+..+.++ .|++|+..+.. ......+...+....+ ++|.+++.+. .++.|.+|
T Consensus 226 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 226 PTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp TTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred CEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence 34688999999 888888777665 67777654322 2222234445555666 5555444433 24678888
Q ss_pred eCCCC
Q 013086 287 DSIFG 291 (449)
Q Consensus 287 d~~~~ 291 (449)
|+.++
T Consensus 301 d~~~~ 305 (695)
T 2bkl_A 301 DPAKP 305 (695)
T ss_dssp BTTBC
T ss_pred eCCCC
Confidence 87654
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=8.8e-10 Score=96.95 Aligned_cols=164 Identities=10% Similarity=0.038 Sum_probs=111.3
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
..+..+........|+++|+.+++++..++.|..|+.. +.. ..+ ..+...+..++++++ ++++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL-LDATAFTNGNAVDAQ-QRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE-EESCSCEEEEEECTT-SCEEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE-eCCCCccceeeECCC-CCEEEEECCCCEEEEEC
Confidence 45555666788999999995588888889999999984 332 222 235667899999998 77666655568899999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE----EcC-------------CCeEEEEECCCCCCccceEE
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV----ADN-------------FGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~ 209 (449)
.. ++........ . ......+..+++.++|+++++ |.. .+.|+.||..+++... . .
T Consensus 114 ~~-g~~~~~~~~~-~----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~-~ 185 (305)
T 3dr2_A 114 AD-GQAHLLVGRY-A----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-M-A 185 (305)
T ss_dssp TT-SCEEEEECEE-T----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-E-E
T ss_pred CC-CCEEEEEecc-C----CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-E-e
Confidence 86 5433222111 0 011123678999999998876 332 3578888876665432 1 1
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCC------CeEEEEEccC
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRR 246 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~ 246 (449)
. ......++|+| ++..|+.+... +.|++|++..
T Consensus 186 -~--~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 186 -D--LDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp -E--ESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEET
T ss_pred -c--CCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 1 22578899999 88877766554 6899998764
No 210
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.37 E-value=1.3e-10 Score=113.62 Aligned_cols=305 Identities=15% Similarity=0.099 Sum_probs=178.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC---------ce-eEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---------~v-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.++.|.-+|..+++.+..+...... .+ ..+.. . +..+++++.|+.|..+|..+|+.+..+.
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~-~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--W-KGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--E-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--E-CCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 4666677889999999999988877421110 01 12233 2 5688899999999999999999988876
Q ss_pred cC-CCCCCCCCcccceeEEEEecCCCEEEEEc------CCCeEEEEECCCCCCccceEEeecC-----------------
Q 013086 158 VN-PNGWHGPRTWRMLYGMDINPEKGVVLVAD------NFGFLYLVDARTNSRSGEAILIHRK----------------- 213 (449)
Q Consensus 158 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------------- 213 (449)
.. .... ... +.+.-...+ ..++++. .+|.|+.||..+++...........
T Consensus 149 ~~~~~~~-~~~----~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 149 TRADHKR-SYT----ITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp CCSCTTS-CCB----CCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred CcCCCCC-Ccc----ccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 53 1110 000 110000113 3445543 3689999999998865432211000
Q ss_pred -----------CCceEEEEEcCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCceeecCCC----
Q 013086 214 -----------GSKVVGLHCNPIQPELLLSCGNDHF-------------------ARIWDIRRLEAGSSLCDLPHK---- 259 (449)
Q Consensus 214 -----------~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~---- 259 (449)
......+++.| +..+++.++.++. |..+|.++++..-......|.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred CCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 00112577888 7788888887764 999999987664444332221
Q ss_pred ---CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCCCCCcc----ceec-------------------C------
Q 013086 260 ---RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSRE----IVHS-------------------H------ 304 (449)
Q Consensus 260 ---~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~-------------------~------ 304 (449)
..+.......+|+ .++.++.+|.++++|..+|+.+..... .... .
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 2222223333565 788999999999999999987521100 0000 0
Q ss_pred --CCCccccceeeeeccCCCCCceEEEcc---ee--c----------ccCCC------------------CCCcceEEEE
Q 013086 305 --DFNRHLTPFRAEWDPKDPSESLAVIGR---YI--S----------ENYNG------------------AALHPIDFID 349 (449)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~--~----------~~~~~------------------~~d~~i~iwd 349 (449)
...+...--.++++|+.....+..... +- . ....| ..++.|..||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 000000001145555532111111000 00 0 00011 1248899999
Q ss_pred CCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 350 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+.+|+.+.++..+.. ...- .+...+.++++|+ ||.|+.||.++|+++.++..+
T Consensus 462 ~~tG~~~W~~~~~~~--~~~g-~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTI--FNGG-TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TTTTEEEEEEEESSS--CCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCCeEeEccCCCC--ccCc-cceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 999999998876541 2221 3566778888888 999999999999998877644
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=2.9e-10 Score=101.26 Aligned_cols=261 Identities=10% Similarity=-0.031 Sum_probs=160.6
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEc---------CCCcEEEEeCcCCeeeEEEeccc------CCceeEEEEeeCCCC
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGD---------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNPTNDG 131 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~---------~d~~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~ 131 (449)
..+..-..+ .++++|+|..++++.. .++.|.+||..+.+....+..+. ......+.|+|+ ++
T Consensus 73 ~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk 149 (386)
T 3sjl_D 73 GMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD-GK 149 (386)
T ss_dssp EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT-SS
T ss_pred EEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC-CC
Confidence 344433444 3999999954444432 36789999999988877764322 235678999999 88
Q ss_pred eEEEEeC--CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC-CCCccceE
Q 013086 132 TVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART-NSRSGEAI 208 (449)
Q Consensus 132 ~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~ 208 (449)
+++++.. ++.|.++|+.+++.+..+.... . ...+....+.+++.+.||.+.+.++.. ++.. ...
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~ 216 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITH 216 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEE
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eee
Confidence 8888764 6899999999999988885421 1 122333445666777788888888876 3331 110
Q ss_pred E--eecCCCceE-EEEEcCCCCCEEEEEeCCCeEEEEEccCCC--CCCceeecC--------CCCcEEEEEEcCCCCEEE
Q 013086 209 L--IHRKGSKVV-GLHCNPIQPELLLSCGNDHFARIWDIRRLE--AGSSLCDLP--------HKRVVNSAYFSPSGSKIL 275 (449)
Q Consensus 209 ~--~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~--------~~~~v~~~~~~~~~~~l~ 275 (449)
. ......++. ...|.+.++.+++ .+.+|.|++.|+.... ....+..+. ....+..++++++++.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly 295 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 295 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence 0 000111221 2355432565444 5568999999986543 122221110 122334577899998888
Q ss_pred EeeC----------CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcce
Q 013086 276 TTSQ----------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 345 (449)
Q Consensus 276 ~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i 345 (449)
+... .+.|.++|+.+++.+... .. . ..+..+.++++.....+ . +...++.|
T Consensus 296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i---~v----g--~~~~~lavs~D~~~~ly-------~---tn~~~~~V 356 (386)
T 3sjl_D 296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---EM----G--HEIDSINVSQDEKPLLY-------A---LSTGDKTL 356 (386)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---EE----E--EEECEEEECSSSSCEEE-------E---EETTTTEE
T ss_pred EEeccccccccCCCCCEEEEEECCCCeEEEEE---EC----C--CCcceEEECCCCCeEEE-------E---EcCCCCeE
Confidence 7643 257999999988763311 11 1 12346788888321111 1 22457889
Q ss_pred EEEECCCceEEEEEecCc
Q 013086 346 DFIDITTGQLVAEVMDPN 363 (449)
Q Consensus 346 ~iwd~~~~~~~~~~~~~~ 363 (449)
.++|..+++.+.++....
T Consensus 357 sViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 357 YIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEETTTCCEEEEECCCC
T ss_pred EEEECCCCcEEEEecCCC
Confidence 999999999999987553
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=3e-09 Score=93.11 Aligned_cols=206 Identities=12% Similarity=0.128 Sum_probs=130.8
Q ss_pred eccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 70 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 70 ~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
..+..--.+..|++++..++++...++.|..||..++.... +. ....+.+++++++ +++++ +. ++.|.+||..+
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~~~~i~~~~d-G~l~v-~~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT--MDAPVSSVALRQS-GGYVA-TI-GTKFCALNWKE 82 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE--CSSCEEEEEEBTT-SSEEE-EE-TTEEEEEETTT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee--CCCceEEEEECCC-CCEEE-EE-CCeEEEEECCC
Confidence 33444567899999765788888888999999998765532 22 4577999999998 77544 44 56899999988
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-----------CCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
++.......... .....+..++++++|+++++... .+.|+.++.. +. .. .........+
T Consensus 83 g~~~~~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~---~~~~~~~~pn 152 (297)
T 3g4e_A 83 QSAVVLATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VK---KYFDQVDISN 152 (297)
T ss_dssp TEEEEEEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EE---EEEEEESBEE
T ss_pred CcEEEEEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EE---EEeecccccc
Confidence 876443332111 11234788999999997665422 2345555543 22 11 1111122578
Q ss_pred EEEEcCCCCCEE-EEEeCCCeEEEEEcc--CCCCC--Cceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 219 GLHCNPIQPELL-LSCGNDHFARIWDIR--RLEAG--SSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 219 ~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.++|+| +++.| ++.+.++.|.+|++. ++... ..+..+ .....+..++++++|++.++...++.|..||..+|+
T Consensus 153 gi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 153 GLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred ceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 999999 87755 555667899999974 22211 112222 123566778888888766666556667777665443
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.5e-09 Score=97.88 Aligned_cols=243 Identities=9% Similarity=-0.013 Sum_probs=152.1
Q ss_pred EEEEeCCCCcEEEEEc----------CCCcEEEEeCcCCeeeEEEecc------cCCceeEEEEeeCCCCeEEEEeC--C
Q 013086 78 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASS--D 139 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~----------~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~~--d 139 (449)
.++++|||. .|+.+. .++.|.+||..+.+....+..+ +......+.|+|+ +++|+++.. +
T Consensus 70 ~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC-CCEEEEEecCCC
Confidence 899999995 555553 3678999999887766655322 1133568999999 888888764 5
Q ss_pred CeEEEEeCCCCceeee-eecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceE--EeecCCC
Q 013086 140 GTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI--LIHRKGS 215 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~ 215 (449)
+.|.++| .+++.... +... .++.+.|++ +.+++.+.||.+.++|. +++...... .......
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~-------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP-------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC-------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence 7899999 99988766 5431 123445554 45666778999999999 665431110 0001111
Q ss_pred c-eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCC--CceeecC--------CCCcEEEEEEcCCCCEEEEeeC-----
Q 013086 216 K-VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG--SSLCDLP--------HKRVVNSAYFSPSGSKILTTSQ----- 279 (449)
Q Consensus 216 ~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~----- 279 (449)
+ .....+.+ ++..++..+..+.+.+.|+...... ..+.... .......+.++|+++.|+++..
T Consensus 213 p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 213 NLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred ceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 1 12345566 4444444446789999998643211 1111000 1223445789999988877653
Q ss_pred -----CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc-eecccCCCC-CCcceEEEECCC
Q 013086 280 -----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGA-ALHPIDFIDITT 352 (449)
Q Consensus 280 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~-~d~~i~iwd~~~ 352 (449)
.+.|.++|+.+++..... .... .+..+.|+|+ |+ .+. ++. .++.|.++|+.+
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i-------~~g~--~p~~i~~s~D---------g~~~l~---v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQI-------SLGH--DVDAISVAQD---------GGPDLY---ALSAGTEVLHIYDAGA 350 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEE-------ECCC--CcCeEEECCC---------CCeEEE---EEcCCCCeEEEEECCC
Confidence 357999999887753211 1111 2457889998 55 232 233 478999999999
Q ss_pred ceEEEEE
Q 013086 353 GQLVAEV 359 (449)
Q Consensus 353 ~~~~~~~ 359 (449)
++.+.++
T Consensus 351 ~~vv~~i 357 (373)
T 2mad_H 351 GDQDQST 357 (373)
T ss_pred CCEEeee
Confidence 9999884
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=1.6e-10 Score=103.56 Aligned_cols=278 Identities=9% Similarity=0.003 Sum_probs=159.8
Q ss_pred ccEEEEEEeCCCCcEEEEEc--CCCcEEEEeCcCCeeeEEE------ecccCCceeEEEEeeCCCCeEEEEeC-----CC
Q 013086 74 RRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVY------GNIHSCIVNNIRFNPTNDGTVYAASS-----DG 140 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~--~d~~i~vwd~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg 140 (449)
.....++++++| +++++.. .++.++||.+.++.. ..+ ...|...+..++++++ ++++++-.. ++
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCC
Confidence 679999999999 6777753 234356666554432 211 1235568999999998 765555433 57
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-c---CCCeEEEEECCCCCCccceEEeecCCCc
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-D---NFGFLYLVDARTNSRSGEAILIHRKGSK 216 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (449)
.|.+||+.+++.+..+..+.... .....+..+++++++..++++ . .++.|.+||+.+++... ....+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r---~~~~~~~~ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR---VLQGYPGI 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE---ECTTCTTT
T ss_pred eEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE---EecCCCcc
Confidence 89999999998777776542211 111236889999876555444 3 57899999998765321 11111000
Q ss_pred -eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 217 -VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 217 -v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
.....+.+ ++..+.+.+.++.+..|. ..+..|+|+|+++.|+++..++. ++|.+.+.....
T Consensus 168 ~~~~~~~~~-~g~~~~~~~~~g~~~~~~----------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~ 229 (343)
T 2qe8_A 168 APEDIDLVI-DGVPVQIGQPDGTVIRPH----------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSN 229 (343)
T ss_dssp SCCSCCCEE-TTEECBEECTTSCEECCC----------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTC
T ss_pred cccccceeE-CCEEEEeccCCCceecee----------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcC
Confidence 00023333 455555566666664442 23678999999999988877653 444443211000
Q ss_pred ---CCccceecCC-CCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceee
Q 013086 296 ---PSREIVHSHD-FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 371 (449)
Q Consensus 296 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 371 (449)
.......... ......+-.++++++ |.+.+ +...++.|.+||..+|+...............+
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~---------G~l~v---a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~v- 296 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKD---------HNIYV---GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSF- 296 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTT---------CCEEE---EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEE-
T ss_pred CCCChhhhhcceEecccCCCCceEEECCC---------CCEEE---EccCCCeEEEEECCCCCEEEEEECCceecCCee-
Confidence 0000000000 000011224566665 44444 345567899999866765444433333456667
Q ss_pred ecCCCCcEEeecC-CCeEEEE
Q 013086 372 KLHPRDDVLASGS-SRSIFIW 391 (449)
Q Consensus 372 ~~~~~~~~l~s~s-dg~i~iw 391 (449)
+|.+++.++++.+ .+.+.+|
T Consensus 297 a~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EECTTSCEEEEECCGGGSGGG
T ss_pred EECCCCcEEEEeCcccccccc
Confidence 8999998888876 4444333
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.33 E-value=1.2e-08 Score=90.57 Aligned_cols=196 Identities=9% Similarity=0.003 Sum_probs=125.9
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
-..+..|+|++..++++...++.|.+||..++...... ....+.+++|+++ ++++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE---CCCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcEEE
Confidence 45678999986578888888899999999876543322 3567999999998 7666654 44 59999998887543
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
...... ......+..++++++|+++++... .+.|+.++ +++.. ...........++|+| +++
T Consensus 124 ~~~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~----~~~~~~~~~~~i~~s~-dg~ 191 (326)
T 2ghs_A 124 HAELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT----KLFADISIPNSICFSP-DGT 191 (326)
T ss_dssp EECSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE----EEEEEESSEEEEEECT-TSC
T ss_pred EeeCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE----EeeCCCcccCCeEEcC-CCC
Confidence 322111 011234889999999997665532 35677776 33211 1111112577899999 887
Q ss_pred EEE-EEeCCCeEEEEEcc--CC-CCC--Cceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 229 LLL-SCGNDHFARIWDIR--RL-EAG--SSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 229 ~l~-~~~~dg~i~iwd~~--~~-~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
.++ +.+.++.|.+||+. ++ ... ..+..+ .....+..++++++|.++++...++.|.+||.
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 654 44557899999985 33 211 122222 23345677888888876666555566766665
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=8.5e-11 Score=104.88 Aligned_cols=288 Identities=8% Similarity=-0.103 Sum_probs=172.2
Q ss_pred cEEEEEcCCC----cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----------CCCeEEEEeCCCCce
Q 013086 87 HILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLA 152 (449)
Q Consensus 87 ~~l~t~~~d~----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~ 152 (449)
+++++-..++ .|.++|..+.+.+..+..+.. + .+.++|+ +++++++. .++.|.+||+.+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3445544444 788999999999888865543 4 7999999 77777775 368999999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEE--EECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYL--VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+..+..+..... ........++++||+++++++.. ...+.+ +|+.+ .. .....+ . +.+.|....
T Consensus 109 v~~I~v~~~~~~--~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~---~i~v~~-~---~~~~p~g~~ 176 (368)
T 1mda_H 109 IADIELPDAPRF--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ---LTKSAS-C---FHIHPGAAA 176 (368)
T ss_dssp EEEEEETTSCSC--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE---EEECSS-C---CCCEEEETT
T ss_pred EEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce---EEECCC-c---eEEccCCCe
Confidence 999876521100 00012568999999999999864 457888 88877 11 111111 1 122342344
Q ss_pred EEEEEeCCCeEEEEEccC-----CCCCCce-eecC-CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC--CCCCcc
Q 013086 229 LLLSCGNDHFARIWDIRR-----LEAGSSL-CDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL--DSPSRE 299 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~-----~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~ 299 (449)
.+++.+.|+.+.+.|+.+ ++..... .... ...+. . ++++..++..+. +.+.+.|+.++.. ......
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~ 251 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCS
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEe
Confidence 556667788888888865 2211000 0010 12233 3 666666666666 8999999865321 000000
Q ss_pred ce---ecCCCCccccceeeeeccCCCCCceEEE---cceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeec
Q 013086 300 IV---HSHDFNRHLTPFRAEWDPKDPSESLAVI---GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKL 373 (449)
Q Consensus 300 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~ 373 (449)
.. ...... ......+.++|+.....+... +..+ +. ++.+.++|+.+++.+.++..+. ....+ +|
T Consensus 252 ~~~~~~~~~~~-p~g~~~v~~s~dg~~lyV~~~~~~~~~~-----~~-~~~~~ViD~~t~~vv~~i~vg~--~p~gi-~~ 321 (368)
T 1mda_H 252 NESGRKADNFR-SAGFQMVAKLKNTDGIMILTVEHSRSCL-----AA-AENTSSVTASVGQTSGPISNGH--DSDAI-IA 321 (368)
T ss_dssp SCTHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECSSCTT-----SC-EEEEEEEESSSCCEEECCEEEE--EECEE-EE
T ss_pred ccccccccccc-cCcceeeEEcCCCCEEEEEeccccCccc-----cc-CCCEEEEECCCCeEEEEEECCC--CcceE-EE
Confidence 00 000000 000001457777322222111 1000 01 2335599999999998887553 45666 89
Q ss_pred CCCCc-EEeecC--CCeEEEEcCCCchhhhhhhcc
Q 013086 374 HPRDD-VLASGS--SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 374 ~~~~~-~l~s~s--dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+|||+ ++++.. ++.|.++|+.+++.+..+...
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 99997 445543 799999999999988777643
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=3.7e-10 Score=110.10 Aligned_cols=306 Identities=13% Similarity=0.086 Sum_probs=179.6
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC----------ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC----------IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.|+.++.++.|.-+|..+++.+..+...... ....+++ . +..|++++.|+.|..+|..+|+.+..+.
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~-~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--W-KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--E-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--E-CCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 4666666889999999999988877422110 1123333 2 6688899999999999999999998887
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecC------------------
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK------------------ 213 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------------ 213 (449)
......... .+.+--.. .+..+++++. +|.|+.||..+++...........
T Consensus 156 ~~~~~~~~~----~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 156 TFEGQKGSL----TITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp TTTTCCSSC----BCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred CCcCcCcCc----ccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 641100000 01110011 2445555543 689999999998765432111100
Q ss_pred -----------CCceEEEEEcCCCCCEEEEEeCCC-------------------eEEEEEccCCCCCCceeecCCC----
Q 013086 214 -----------GSKVVGLHCNPIQPELLLSCGNDH-------------------FARIWDIRRLEAGSSLCDLPHK---- 259 (449)
Q Consensus 214 -----------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~---- 259 (449)
......++++| +..+++.++.++ .|..+|..+++..-.++...|.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred ccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 00113567888 777888877664 4999999887664444332221
Q ss_pred ---CcEEEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCCCCCCccce----ecC-----------------------CC
Q 013086 260 ---RVVNSAYFSPSG---SKILTTSQDNRLRIWDSIFGNLDSPSREIV----HSH-----------------------DF 306 (449)
Q Consensus 260 ---~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~-----------------------~~ 306 (449)
....-+....+| ..|++++.+|.++++|..+|+.+....... ... ..
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223344477 689999999999999999998743211000 000 00
Q ss_pred CccccceeeeeccCCCCCceEEEc---------ceec------------ccCCC----------CCCcceEEEECCCceE
Q 013086 307 NRHLTPFRAEWDPKDPSESLAVIG---------RYIS------------ENYNG----------AALHPIDFIDITTGQL 355 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~------------~~~~~----------~~d~~i~iwd~~~~~~ 355 (449)
.+...--.++++|+.....+.... .|.. ..+.| ...+.|..||+.+|+.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 000000124555553222111110 0000 00001 1237899999999999
Q ss_pred EEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 356 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 356 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+.++.... ..... .+..++.+++.++ ||.+++||..+|+.+..+...
T Consensus 470 ~W~~~~~~--~~~~g-~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 470 AWSVEHVS--PWNGG-TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEEEESS--SCCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EeecCCCC--CCcCc-ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 98886543 22222 3566777888888 999999999999998877643
No 218
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.29 E-value=2.2e-09 Score=94.73 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=132.7
Q ss_pred cCccEEEEEEeCC-CCcEEEEEcCCCcEEEEeCcCCeeeEE-Eec---ccCCceeEEEEeeCCCCeEEEEeCC-------
Q 013086 72 HSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIV-YGN---IHSCIVNNIRFNPTNDGTVYAASSD------- 139 (449)
Q Consensus 72 h~~~V~~~~~~~~-~~~~l~t~~~d~~i~vwd~~~~~~~~~-~~~---~h~~~v~~~~~~~~~~~~l~s~~~d------- 139 (449)
+...+.+++++++ | +++++.. .+.|.+||.. +..... ... .....+.+++++++ +.++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccc
Confidence 5567999999999 7 5555554 4479999988 544322 111 12245889999998 7777766544
Q ss_pred --------CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe----cCCCEEEEE-cCCCeEEEEECC-CCCCcc
Q 013086 140 --------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----PEKGVVLVA-DNFGFLYLVDAR-TNSRSG 205 (449)
Q Consensus 140 --------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~ 205 (449)
+.|..|+.. ++........ .....++++ ++++.++++ ..++.|.+||+. .+....
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~----------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAF----------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEE----------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCC----------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 567777765 5443322110 126788999 999766555 567899999976 332111
Q ss_pred --ceEEeecCC-CceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEE-EeeCCC
Q 013086 206 --EAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL-TTSQDN 281 (449)
Q Consensus 206 --~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 281 (449)
......... ..+..+++++ +++++++...++.|.+||..+++....+. .+...+.+++|+|+++.|+ +...++
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred ceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCC
Confidence 011111111 3578899999 88988888788999999987544433332 2446789999999999554 445568
Q ss_pred cEEEEeCCC
Q 013086 282 RLRIWDSIF 290 (449)
Q Consensus 282 ~i~vwd~~~ 290 (449)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999999864
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=9.8e-10 Score=107.39 Aligned_cols=268 Identities=15% Similarity=0.111 Sum_probs=160.0
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecc-cCC---ceeE-EEEeeCCCCeEEEEe------CCCeEEEEeCCCCceeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNI-HSC---IVNN-IRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLM 156 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~-h~~---~v~~-~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~ 156 (449)
.++.++.|+.|..+|..+++.+...... +.. .+.+ ..+ . +..+++++ .+|.|..||..+|+.+..+
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-V--NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-E--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-E--CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 5777888999999999999988776432 211 1111 111 1 33455543 3789999999999998877
Q ss_pred ecCCC-CCCCC---------------------CcccceeEEEEecCCCEEEEEcCCCe-------------------EEE
Q 013086 157 NVNPN-GWHGP---------------------RTWRMLYGMDINPEKGVVLVADNFGF-------------------LYL 195 (449)
Q Consensus 157 ~~~~~-~~~~~---------------------~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i 195 (449)
..... ..... ........++++++..+++++..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 63211 10000 00011235788999999999988764 999
Q ss_pred EECCCCCCccceEEeecC-------CCceEEEEEcCCCCC---EEEEEeCCCeEEEEEccCCCCCCceeecC--------
Q 013086 196 VDARTNSRSGEAILIHRK-------GSKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLP-------- 257 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------- 257 (449)
||..+++...... ...+ ...+....... ++. .++.++.+|.++++|.++++.........
T Consensus 280 lD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 280 VNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEccCCceeEeee-cCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999988654331 1111 11122222222 343 78889999999999998866531111000
Q ss_pred ------------------C-----------CCcEEEEEEcCCCCEEEEeeCC----------------------------
Q 013086 258 ------------------H-----------KRVVNSAYFSPSGSKILTTSQD---------------------------- 280 (449)
Q Consensus 258 ------------------~-----------~~~v~~~~~~~~~~~l~~~~~d---------------------------- 280 (449)
. ......++|+|+..+|++...+
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0 0012237899988888876543
Q ss_pred -----------------CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCc
Q 013086 281 -----------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 343 (449)
Q Consensus 281 -----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 343 (449)
|.|..||+.+|+..-. ...........+++.|.++. .|+.|+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~------------------~~~~~~~~~g~~~tagglvf---~gt~dg 496 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWE------------------VPYVTIFNGGTLSTAGNLVF---EGSADG 496 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEE------------------EEESSSCCCCEEEETTTEEE---EECTTS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeE------------------ccCCCCccCccceECCCEEE---EECCCC
Confidence 4566666665543110 00000001123444455555 578899
Q ss_pred ceEEEECCCceEEEEEecCccceeceeeecCCCCcEEee
Q 013086 344 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s 382 (449)
.|+.||..+|+.+.++..+.......+ .|..+|+..++
T Consensus 497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~-ty~~~G~qyv~ 534 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAASGVMAAPV-TYSVDGEQYVT 534 (689)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred cEEEEECCCCccceeeeCCCCcccCce-EEEECCEEEEE
Confidence 999999999999999987653333445 67788875444
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=7.2e-11 Score=105.59 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=108.7
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeee-eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEE
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVD 197 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 197 (449)
.++.+++++. ..++++|+.+ .+.+|++........ -.............. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 6899999999 8899999987 466798764331000 000000000001122 899999 89999999 889999999
Q ss_pred CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEe
Q 013086 198 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
+.+..... ..+.+...+.++.+.+ . .+++++.||.|.+||+.+... .. +...|++++|||+| ++.|
T Consensus 113 v~sl~~~~---~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~---~~---~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 113 LEELSEFR---TVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST---KQ---LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SSSTTCEE---EEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE---EE---EEESEEEEEECSSE--EEEE
T ss_pred chhhhccC---ccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc---cc---ccCCceEEEEcCCc--eEEE
Confidence 98876332 2333444688888776 2 388889999999999986443 21 44679999999999 6788
Q ss_pred eCCCcEEEEeCCCCC
Q 013086 278 SQDNRLRIWDSIFGN 292 (449)
Q Consensus 278 ~~dg~i~vwd~~~~~ 292 (449)
..||.+++|+...+.
T Consensus 179 ~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 179 LKDRSFQSFAWRNGE 193 (388)
T ss_dssp ETTSCEEEEEEETTE
T ss_pred EcCCcEEEEcCCCcc
Confidence 999999999887655
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=5.1e-09 Score=95.06 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=162.6
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEeccc--------CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH--------SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h--------~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.++.++.++.|..+|..+++......... ...+.... ... +..+++++.++.|..+|..+|+.+......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVS-GGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEE-TTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEe-CCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 46677778999999999888776654211 12232222 223 568888899999999999999988777654
Q ss_pred CCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCce------EEEEEcCCCCCEEEEE
Q 013086 160 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV------VGLHCNPIQPELLLSC 233 (449)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~~~ 233 (449)
... ...... .+..+++++.++.|..+|..+++....... ...+ ..... .+..++++
T Consensus 133 ~~~---------~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~----~~~~~~~~~~~~~~~---~~~~v~~g 194 (376)
T 3q7m_A 133 GEA---------LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL----DMPSLSLRGESAPTT---AFGAAVVG 194 (376)
T ss_dssp SCC---------CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC----CC-----CCCCCCEE---ETTEEEEC
T ss_pred Cce---------EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC----CCCceeecCCCCcEE---ECCEEEEE
Confidence 321 111111 255788889999999999998875532211 1111 11222 23567888
Q ss_pred eCCCeEEEEEccCCCCCCceeecCCCC-----cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCC
Q 013086 234 GNDHFARIWDIRRLEAGSSLCDLPHKR-----VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 306 (449)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 306 (449)
+.++.|..+|..+++............ .+..+.-.| .+..+++++.++.+..+|..+|+..-. ...
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~-------~~~ 267 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK-------REL 267 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE-------ECC
T ss_pred cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee-------ccC
Confidence 889999999998755432222111000 000011111 356777888899999999988865210 000
Q ss_pred CccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-C
Q 013086 307 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S 385 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-d 385 (449)
... ......+..+. .++.++.|..+|..+|+.+.............. .. .+..|+.++ +
T Consensus 268 ~~~--------------~~~~~~~~~l~---~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 268 GSV--------------NDFIVDGNRIY---LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP-VL--YNGNLVVGDSE 327 (376)
T ss_dssp CCE--------------EEEEEETTEEE---EEETTCCEEEEETTTCCEEEEECTTTTSCCCCC-EE--ETTEEEEECTT
T ss_pred CCC--------------CCceEECCEEE---EEcCCCeEEEEECCCCcEEEeecccCCCcccCC-EE--ECCEEEEEeCC
Confidence 000 01122233332 356678899999999999887763222222222 12 245666666 8
Q ss_pred CeEEEEcCCCchhhhhhhc
Q 013086 386 RSIFIWRPKEKSELVEQKE 404 (449)
Q Consensus 386 g~i~iw~~~~~~~~~~~~~ 404 (449)
|.|.++|..+|+.+.....
T Consensus 328 g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEec
Confidence 9999999999987765543
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=2.7e-09 Score=104.10 Aligned_cols=269 Identities=16% Similarity=0.120 Sum_probs=163.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccC----CceeEEEEeeCCCCeEEEEeC------CCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS----CIVNNIRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.|+.|..+|..+++.+..+..... ..+..--... +..+++++. ++.|+.+|..+|+.+..+.
T Consensus 130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 577778899999999999998887743201 1222111111 345555553 6999999999999988876
Q ss_pred cCCCCCCCC-----------------------CcccceeEEEEecCCCEEEEEcCCC-------------------eEEE
Q 013086 158 VNPNGWHGP-----------------------RTWRMLYGMDINPEKGVVLVADNFG-------------------FLYL 195 (449)
Q Consensus 158 ~~~~~~~~~-----------------------~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~i 195 (449)
......... ........+++++++..++++..++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 543221000 0001123578899999999887764 5999
Q ss_pred EECCCCCCccceEEeecC-------CCceEEEEEcCCCC---CEEEEEeCCCeEEEEEccCCCCCCceeecC--------
Q 013086 196 VDARTNSRSGEAILIHRK-------GSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDLP-------- 257 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------- 257 (449)
+|..+++...... ...+ ......+.... ++ ..++.++.+|.|+++|..+++.........
T Consensus 288 lD~~TG~~~W~~~-~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 288 LDPDTGKYKWHYQ-ETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp ECTTTCCEEEEEE-SSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EECCCCCEEEEEe-cCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999987654332 1111 11222233333 55 688999999999999998866532221100
Q ss_pred -CCCc------------------------EEEEEEcCCCCEEEEeeCC--------------------------------
Q 013086 258 -HKRV------------------------VNSAYFSPSGSKILTTSQD-------------------------------- 280 (449)
Q Consensus 258 -~~~~------------------------v~~~~~~~~~~~l~~~~~d-------------------------------- 280 (449)
...+ -..++++|+..++++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 0000 1257889988888876543
Q ss_pred -----------CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEE
Q 013086 281 -----------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 349 (449)
Q Consensus 281 -----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd 349 (449)
|.|..||+.+|+..-.. .... | .....+...+..+. .++.++.+++||
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~-----~~~~------------~-~~~g~~~~~g~~v~---~g~~dg~l~a~D 504 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSV-----EHVS------------P-WNGGTLTTAGNVVF---QGTADGRLVAYH 504 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEE-----EESS------------S-CCCCEEEETTTEEE---EECTTSEEEEEE
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeec-----CCCC------------C-CcCcceEeCCCEEE---EECCCCcEEEEE
Confidence 56777777766542100 0000 0 01122333354444 568899999999
Q ss_pred CCCceEEEEEecCccceeceeeecCCCCcEEee
Q 013086 350 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 350 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s 382 (449)
..+|+.+.++..+.......+ .|..+|+.++.
T Consensus 505 ~~tG~~lw~~~~~~~~~~~p~-~y~~~G~~~v~ 536 (677)
T 1kb0_A 505 AATGEKLWEAPTGTGVVAAPS-TYMVDGRQYVS 536 (677)
T ss_dssp TTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred CCCCceeeeeeCCCCcccCCE-EEEeCCEEEEE
Confidence 999999999986653333444 57788875444
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.22 E-value=8e-10 Score=100.24 Aligned_cols=247 Identities=11% Similarity=0.017 Sum_probs=153.5
Q ss_pred EEEEeCCCCcEEEEEc---------CCCcEEEEeCcCCeeeEEEecc------cCCceeEEEEeeCCCCeEEEEeC--CC
Q 013086 78 CLEFHPTNNHILLSGD---------KKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASS--DG 140 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~---------~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~~--dg 140 (449)
.++++|+|..++++.. .++.|.++|..+.+....+..+ .......+.|+|+ +++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCC
Confidence 7999999965444432 4678999999998877766422 1234678899999 888888764 57
Q ss_pred eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceE-EeecCCCc-e
Q 013086 141 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI-LIHRKGSK-V 217 (449)
Q Consensus 141 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~-v 217 (449)
.|.+.|+.+++.+..+.... . ....|++ ..+++.+.||.+.+.++.+++...... .......+ .
T Consensus 201 ~VsVID~~t~kvv~~I~v~g-----------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~ 267 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPD-----------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLI 267 (426)
T ss_dssp EEEEEETTTTEEEEEEECCS-----------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBC
T ss_pred eEEEEECCCCeEEEEEEcCC-----------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCcee
Confidence 99999999999988876421 1 1223332 455556667777777774433221000 00000111 1
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC--CCceeecC--------CCCcEEEEEEcCCCCEEEEeeC--------
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLP--------HKRVVNSAYFSPSGSKILTTSQ-------- 279 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-------- 279 (449)
..+.+.+ ++..++..+..+.|.+.|+..... ...+.... .......++++|+++.+++...
T Consensus 268 ~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 268 NHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp SCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 2356787 667666667789999999864321 01111000 0111223689999888777642
Q ss_pred --CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc-eecccCCCCCCcceEEEECCCceEE
Q 013086 280 --DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 280 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
++.|.++|+.+++.+... .. ...+..+.|+|+ |+ ++.. +...++.|.++|+.+++.+
T Consensus 347 ~~s~~VsVID~~T~kvv~~I-------~v--g~~P~gia~spD---------g~~~lyv--~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 347 AASRFVVVLNAETGERINKI-------EL--GHEIDSINVSQD---------AEPLLYA--LSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp SCEEEEEEEETTTCCEEEEE-------EE--EEEECEEEECCS---------SSCEEEE--EETTTTEEEEEETTTCCEE
T ss_pred CCCCEEEEEECCCCeEEEEE-------EC--CCCcCeEEEccC---------CCEEEEE--EcCCCCeEEEEECCCCCEE
Confidence 357999999988763311 11 112457888988 44 3320 1235789999999999999
Q ss_pred EEE
Q 013086 357 AEV 359 (449)
Q Consensus 357 ~~~ 359 (449)
.++
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=2.9e-08 Score=90.05 Aligned_cols=265 Identities=13% Similarity=0.094 Sum_probs=154.4
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 167 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 167 (449)
.++.++.++.|..+|..+++...... ............ +..+++++.++.|..+|..+|+.+..............
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 46677788999999999988776653 222222222222 45788888999999999999998887765432110000
Q ss_pred cccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC----CceEEEEEcC-CCCCEEEEEeCCCeEEEE
Q 013086 168 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG----SKVVGLHCNP-IQPELLLSCGNDHFARIW 242 (449)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~~-~~~~~l~~~~~dg~i~iw 242 (449)
...... .+..+++++.++.+..+|..+++............ ..+..+...| ..+..++.++.++.|..+
T Consensus 181 ----~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 181 ----ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ----CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ----CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 011112 24578888889999999999887543221110000 0000011111 024667778889999999
Q ss_pred EccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCC
Q 013086 243 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 322 (449)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
|..+++.. ..... .....+.. ++..|++++.++.|..+|..+|+..-. .. .... ..
T Consensus 255 d~~tG~~~---w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~-----~~-~~~~------------~~ 310 (376)
T 3q7m_A 255 DLRSGQIM---WKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT-----QS-DLLH------------RL 310 (376)
T ss_dssp ETTTCCEE---EEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-----EC-TTTT------------SC
T ss_pred ECCCCcEE---eeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-----ec-ccCC------------Cc
Confidence 99875442 22211 22344444 466788888899999999998875210 00 0000 00
Q ss_pred CCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEc
Q 013086 323 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 392 (449)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~ 392 (449)
.......+..+. .++.++.|.++|..+|+.+.............. .. .++ .|+.++ +|.|+.|+
T Consensus 311 ~~~~~~~~~~l~---v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~-~~-~~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVLYNGNLV---VGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP-VA-ADG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCEEETTEEE---EECTTSEEEEEETTTCCEEEEEECCTTCBCSCC-EE-ETT-EEEEEBTTSCEEEEE
T ss_pred ccCCEEECCEEE---EEeCCCeEEEEECCCCcEEEEEecCCCcceeCC-EE-ECC-EEEEEeCCCEEEEEe
Confidence 111122233333 467788999999999999888765332222211 12 244 555555 89999886
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=3.5e-09 Score=93.05 Aligned_cols=194 Identities=9% Similarity=0.048 Sum_probs=124.9
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe--cc-cCCceeEEEEeeCCCCeEEE----EeC-
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NI-HSCIVNNIRFNPTNDGTVYA----ASS- 138 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~--~~-h~~~v~~~~~~~~~~~~l~s----~~~- 138 (449)
..+..+...+..++++++| +++++...++.|.+|+.. +....... .+ ....++++++.++ +.++++ |..
T Consensus 79 ~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~ 155 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRK 155 (305)
T ss_dssp EEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSC
T ss_pred EEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCccc
Confidence 4555667789999999999 566665566789999986 43322221 11 1234778999998 887776 332
Q ss_pred ------------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC------CeEEEEECCC
Q 013086 139 ------------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDART 200 (449)
Q Consensus 139 ------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 200 (449)
.+.|..||..+++..... .. .....++|+|+++.|+++... +.|.+|++..
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~---------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL---------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE---------SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred cccccccccccCCCeEEEEcCCCCcEEEEe--cC---------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 256888887666654332 11 126789999999988777665 7899999875
Q ss_pred CCCccceEE-eecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC
Q 013086 201 NSRSGEAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 201 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
.. ...... ..........+++.+ ++++.++ ..+ .|.+|+.. ...+..+.....+.+++|+++++.|+.++.
T Consensus 225 ~~-l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~-~~~-gv~~~~~~----g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 225 GA-LHDRRHFASVPDGLPDGFCVDR-GGWLWSS-SGT-GVCVFDSD----GQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp TE-EEEEEEEECCSSSCCCSEEECT-TSCEEEC-CSS-EEEEECTT----SCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CC-ccCCeEEEECCCCCCCeEEECC-CCCEEEe-cCC-cEEEECCC----CCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 43 111111 111123456788998 8885554 444 49999974 223333322335889999999988888877
Q ss_pred CCc
Q 013086 280 DNR 282 (449)
Q Consensus 280 dg~ 282 (449)
++.
T Consensus 297 ~~l 299 (305)
T 3dr2_A 297 PCL 299 (305)
T ss_dssp TEE
T ss_pred CeE
Confidence 643
No 226
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1.5e-08 Score=98.73 Aligned_cols=304 Identities=13% Similarity=0.115 Sum_probs=176.2
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCC---------ce-eEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~---------~v-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.++.|.-+|..+++.+......... .+ ..+++. +..+++++.|+.|..+|..+|+.+..+.
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 4566667889999999999888776421110 01 123332 5578888899999999999999998876
Q ss_pred cCCCCCCCCCcccceeE-EEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecC-----------------
Q 013086 158 VNPNGWHGPRTWRMLYG-MDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK----------------- 213 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~----------------- 213 (449)
........ . +.+ ..+ .+..++++.. +|.|+.+|..+++...........
T Consensus 145 ~~~~~~~~-~----~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 145 TTDPAKPY-S----ITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp CSCTTSSC-B----CCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred cCCCCCcc-e----ecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 53221000 0 110 011 1345555543 589999999998765433211000
Q ss_pred -----------CCceEEEEEcCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCceeecCCC----
Q 013086 214 -----------GSKVVGLHCNPIQPELLLSCGNDHF-------------------ARIWDIRRLEAGSSLCDLPHK---- 259 (449)
Q Consensus 214 -----------~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~---- 259 (449)
......+++.| ...+++.++.++. |..+|.++++..-..+...|.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~ 296 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF 296 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence 00112467777 6778888877663 999999887664444332222
Q ss_pred ---CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCCCCCcc---------------ceecCCC--Cc--------
Q 013086 260 ---RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSRE---------------IVHSHDF--NR-------- 308 (449)
Q Consensus 260 ---~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~~~~--~~-------- 308 (449)
.+.....+..+|+ .++.++.+|.++++|..+|+.+..... ....... ..
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 2333333334665 688999999999999999987521100 0000000 00
Q ss_pred ---cccceeeeeccCCCCCceEEE----------------cc-eecc------cC-CCCCCcceEEEECCCceEEEEEec
Q 013086 309 ---HLTPFRAEWDPKDPSESLAVI----------------GR-YISE------NY-NGAALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 309 ---~~~~~~~~~~~~~~~~~~~~~----------------g~-~~~~------~~-~~~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
...--.++++|+.....+... +. ++.. .+ ....++.|..||+.+|+.+.+...
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 000001345554322111110 00 0000 00 122458899999999999988765
Q ss_pred CccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 362 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 362 ~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
+.. .... .+...+.+++.++ ||.|+.||..+|+.+..+...
T Consensus 457 ~~~--~~~~-~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 457 PTH--WNGG-TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp SSS--CCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCC--CcCc-eeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 431 1111 3445677888888 999999999999988777543
No 227
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=1.9e-08 Score=87.93 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=121.6
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc---cCCceeEEEEeeCCCCeEEEEeCC---------
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---HSCIVNNIRFNPTNDGTVYAASSD--------- 139 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d--------- 139 (449)
+...+.+++++++| +++++ . ++.|.+||..++......... ....+++++++|+ ++++++....
T Consensus 52 ~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccC
Confidence 34679999999999 55554 3 567999999877654333211 2245889999998 7766654221
Q ss_pred CeEEEEeCCC-CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE-EcCCCeEEEEECC--CCCCcc-c-eEEeecC
Q 013086 140 GTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDAR--TNSRSG-E-AILIHRK 213 (449)
Q Consensus 140 g~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~~~-~-~~~~~~~ 213 (449)
..-.+|.+.. ++....... ......++|+|+++.+++ .+.++.|.+||+. ++.... . .......
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQ----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE 197 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEE----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG
T ss_pred CCcEEEEEECCCCEEEEeec----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC
Confidence 2234444432 332222111 112678999999987654 5667899999873 443211 1 1111122
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEc-CCCCEEEEeeC
Q 013086 214 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS-PSGSKILTTSQ 279 (449)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 279 (449)
...+..+++.+ ++++.++....+.|..||..+++....+. .+...+++++|. |+++.|++++.
T Consensus 198 ~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 198 EQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEEEcC
Confidence 24678899999 88888888888899999987644433332 244679999998 88887766654
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=9.3e-09 Score=95.57 Aligned_cols=280 Identities=11% Similarity=0.114 Sum_probs=175.6
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEe---------------------c-----------cc------CCceeEEEEee---
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYG---------------------N-----------IH------SCIVNNIRFNP--- 127 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~---------------------~-----------~h------~~~v~~~~~~~--- 127 (449)
|.+|+..|.++|+-+.+++.+..+. . .+ .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6778888889988887776655542 0 01 12223355555
Q ss_pred --CCCCeEEEEeC-CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE-e-cCCCEEEEEc--------------
Q 013086 128 --TNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI-N-PEKGVVLVAD-------------- 188 (449)
Q Consensus 128 --~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~-------------- 188 (449)
+ +++++.... ++.|.+.|+.+.++...+..+... .+..+++ + |+++++++++
T Consensus 98 ~~D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--------~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 98 KYD-GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEE-EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CcC-CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--------CCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 5 566666554 667999999999988866554321 2778887 5 8999999884
Q ss_pred ----CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC---------------------------
Q 013086 189 ----NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH--------------------------- 237 (449)
Q Consensus 189 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------------- 237 (449)
.++.+.++|..+.+...++... + ....++++| ++.++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vg---g-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVS---G-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEES---S-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeC---C-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 3458999999987655433221 1 345677888 888888877543
Q ss_pred -----------eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCC-----CCCCccc
Q 013086 238 -----------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNL-----DSPSREI 300 (449)
Q Consensus 238 -----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~-----~~~~~~~ 300 (449)
.|.+.|.++.+....+....-.....++.++|||+++++++ .+..|.++|+.+.+. +.+...+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 35566665421111122222233456799999999887766 478999999985421 1111111
Q ss_pred eecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCC----------ceEEEEEecCcc----ce
Q 013086 301 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT----------GQLVAEVMDPNI----TT 366 (449)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~----~~ 366 (449)
. ....-...+..++|+|+ |.... +.--+++|.+||+.+ .+.+.++..+-. ..
T Consensus 324 ~--~~v~vG~gP~h~aF~~d---------G~aY~---t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~ 389 (595)
T 1fwx_A 324 V--AEPELGLGPLHTAFDGR---------GNAYT---SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT 389 (595)
T ss_dssp E--ECCBCCSCEEEEEECTT---------SEEEE---EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE
T ss_pred E--EEcCCCCCcceEEECCC---------CeEEE---EEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccccee
Confidence 1 12233344667899998 31111 234568899999987 567777765531 11
Q ss_pred eceeeecCCCCcEEeecC--C-CeE-----------EEEcCCCch
Q 013086 367 ISPVNKLHPRDDVLASGS--S-RSI-----------FIWRPKEKS 397 (449)
Q Consensus 367 v~~v~~~~~~~~~l~s~s--d-g~i-----------~iw~~~~~~ 397 (449)
...+ .++|||++|+++. . ..+ .++|+..++
T Consensus 390 ~~g~-t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 390 VMGE-TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTT-STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccce-EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 1233 6899999999954 2 333 889985544
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.10 E-value=4.9e-12 Score=114.29 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=117.6
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEE
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 209 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 209 (449)
+..+++++.||.|+.||..+|+.+..+.. .. +.+..+..++..+++++.||.|+.||..+++..... .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~---------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~ 76 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP---------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-P 76 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CC---------SCCCC-----CCEEECTTTCCEEEC-----CCSEEC-S
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CC---------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-e
Confidence 67899999999999999999999888765 11 333334566777888889999999999887654221 0
Q ss_pred eecCCCceE-EEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 210 IHRKGSKVV-GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 210 ~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
.+.. ..+. +..+. .+..+++++.++.|+.||..+++....+.. + . ...++|++..+++++.|+.|+.||.
T Consensus 77 ~~~~-~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--~-~---~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 77 FTIP-ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSS--A-F---ADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CCHH-HHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCS
T ss_pred ccCc-cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecC--C-C---cccccccCCEEEEEecCCEEEEEEC
Confidence 1100 0010 00111 345677888899999999988666433321 1 1 2345678889999999999999999
Q ss_pred CCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceec
Q 013086 289 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 368 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 368 (449)
++|+..-.... .... ...+.++. ...+.++ .++.++.|..||..+|+.+.++.... .+.
T Consensus 148 ~tG~~~W~~~~-------~~~~---~~~~~~~~-----~~~~~v~----~~~~dg~v~a~d~~tG~~~W~~~~~~--pv~ 206 (369)
T 2hz6_A 148 KTRELRWNATY-------FDYA---ASLPEDDV-----DYKMSHF----VSNGDGLVVTVDSESGDVLWIQNYAS--PVV 206 (369)
T ss_dssp SSSSCCCEEEE-------EEEC---CBCCCCCT-----TCCCCEE----EEETSCEEEEECTTTCCEEEEEECSS--CEE
T ss_pred CCCCEEEeEec-------cccc---CccccCCc-----cccceEE----EECCCCEEEEEECCCCcEEEEecCCC--ceE
Confidence 99876432110 0000 11111110 0001111 35678999999999999988876433 232
Q ss_pred eeeecCCCCcEEee---cCCCeEEEEcCCCch
Q 013086 369 PVNKLHPRDDVLAS---GSSRSIFIWRPKEKS 397 (449)
Q Consensus 369 ~v~~~~~~~~~l~s---~sdg~i~iw~~~~~~ 397 (449)
.+..++++|...+. .+++.++.++..+|+
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCC
Confidence 33256667653211 113445555555555
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=8.9e-09 Score=92.36 Aligned_cols=240 Identities=11% Similarity=0.102 Sum_probs=136.5
Q ss_pred eCCCCeE-EEEeCCCeEEEEeCCCC----ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC------CeEEE
Q 013086 127 PTNDGTV-YAASSDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYL 195 (449)
Q Consensus 127 ~~~~~~l-~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i 195 (449)
++ .++| +.+..++.|.++|+.+. +....+.... ............+...|++ .++++..+ |.|.+
T Consensus 93 ~~-r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IE-RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--VKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CC-SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH--HHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred cc-CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh--cccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 66 5554 45566889999999755 4444442000 0000001125567788999 66665444 78999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe-------------------CCCeEEEEEccCCCCCCceeec
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-------------------NDHFARIWDIRRLEAGSSLCDL 256 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~ 256 (449)
+|..+.+..............-..+.|+| +++.+++.. ....|.+||+.+.+....+..-
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 99998876543321111112344688899 888888874 3689999999864333333221
Q ss_pred CCCCcEEEEEE--cCCCCEEEEee------CCCcEEEEeCCCCCCCCCCccc-eecC----C-------CCc-cccceee
Q 013086 257 PHKRVVNSAYF--SPSGSKILTTS------QDNRLRIWDSIFGNLDSPSREI-VHSH----D-------FNR-HLTPFRA 315 (449)
Q Consensus 257 ~~~~~v~~~~~--~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~-~~~~----~-------~~~-~~~~~~~ 315 (449)
........+.| +|+++++.+++ .++.|.+|....++... ...+ +... . +.. ...+..+
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA-EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE-EEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE-EEEEeCCCccccccccccccccccCCCceeEE
Confidence 12234455656 99999988777 45688877665432210 0000 0000 0 000 1123456
Q ss_pred eeccCCCCCceEEEcceecccCCCCCCcceEEEECC---CceEEEEEecCcc---------c----eeceeeecCCCCcE
Q 013086 316 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT---TGQLVAEVMDPNI---------T----TISPVNKLHPRDDV 379 (449)
Q Consensus 316 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~---~~~~~~~~~~~~~---------~----~v~~v~~~~~~~~~ 379 (449)
..+|+ |+++-. +.-..+.|.+||+. +.+++..+..... . .-..+ +++|||++
T Consensus 327 ~lS~D---------GrfLYV--Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~-~lSpDGk~ 394 (462)
T 2ece_A 327 DISLD---------DKFLYL--SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML-EISRDGRR 394 (462)
T ss_dssp EECTT---------SCEEEE--EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE-EECTTSSE
T ss_pred EECCC---------CCEEEE--EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE-EEcCCCCE
Confidence 67777 555542 22334789999985 3466666654311 0 23455 79999998
Q ss_pred EeecC
Q 013086 380 LASGS 384 (449)
Q Consensus 380 l~s~s 384 (449)
|+++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88765
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=108.80 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=103.3
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 166 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 166 (449)
..+++++.|+.|+.||..+++....+. . ..+.+..+..+ +..+++++.||.|+.||..+|+.+.........
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 468888999999999999999888774 2 45555556666 677888889999999999998876655332110
Q ss_pred Cccccee-EEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 013086 167 RTWRMLY-GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 245 (449)
Q Consensus 167 ~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 245 (449)
.+. +..+ ..+..+++++.++.++.||..+++....... .. ...++| .+..+++++.++.|+.||.+
T Consensus 82 ----~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 82 ----LVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSP-STSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp ----HHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSS
T ss_pred ----ccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccc-cCCEEEEEecCCEEEEEECC
Confidence 000 0011 1345677888899999999999876543211 11 234567 77888889999999999998
Q ss_pred CCCCCCceeecCCCCcEEEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCC
Q 013086 246 RLEAGSSLCDLPHKRVVNSAYFSPSG---SKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+++....+.... .....+.++. ..+++++.||.|..||..+|+.
T Consensus 149 tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 149 TRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred CCCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 876544433211 1222333322 4577788899999999998875
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=6.4e-08 Score=86.87 Aligned_cols=198 Identities=11% Similarity=0.041 Sum_probs=129.3
Q ss_pred CCCCcEEEEEcCCCcEEEEeCcCC----eeeEEEe------cccCCceeEEEEeeCCCCeEEEEeCC------CeEEEEe
Q 013086 83 PTNNHILLSGDKKGQVGVWDFYKV----SEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTD 146 (449)
Q Consensus 83 ~~~~~~l~t~~~d~~i~vwd~~~~----~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd 146 (449)
.++++++++|..++.|.|+|+.+. +....+. +.-......+...|+ + +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEE
Confidence 777777788888999999999754 3334431 001124566788898 6 77776655 7899999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-------------------CCCeEEEEECCCCCCccce
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------------------NFGFLYLVDARTNSRSGEA 207 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 207 (449)
..+.+.+..+....... ..-+.+.|+|+++.++++. ....|.+||+.+++....
T Consensus 171 ~~T~~v~~~~~~~~~~~------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t- 243 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQ------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS- 243 (462)
T ss_dssp TTTCCEEEECCSBCTTC------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-
T ss_pred CCCCeEEEEEccCCCCc------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-
Confidence 99999998886442210 1144678899999888884 368999999998643322
Q ss_pred EEeecCCCceEEEEE--cCCCCCEEEEEe------CCCeEEEEEccCCCC--CCceeecC----------------CCCc
Q 013086 208 ILIHRKGSKVVGLHC--NPIQPELLLSCG------NDHFARIWDIRRLEA--GSSLCDLP----------------HKRV 261 (449)
Q Consensus 208 ~~~~~~~~~v~~~~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~~~~~----------------~~~~ 261 (449)
+.....+.....+.| +| ++.++.++. .+++|.+|....+.. .+.+.... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 122111123455555 88 777776666 566887765532110 00000000 0245
Q ss_pred EEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 013086 262 VNSAYFSPSGSKILTTSQ-DNRLRIWDSIF 290 (449)
Q Consensus 262 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 290 (449)
...|.+||||++|.++.. .+.|.+||+..
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 678999999999988776 68999999863
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=6.8e-08 Score=81.39 Aligned_cols=201 Identities=9% Similarity=-0.036 Sum_probs=136.6
Q ss_pred cEEEEEEeCCCCcEEEEEcC--CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 75 RVTCLEFHPTNNHILLSGDK--KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
....++|++++ .++++.+. ++.|+++|+.+++....+..+.......+++.. +.+.++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcE
Confidence 36799999987 66666543 579999999999888776422222233455542 34444445589999999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec--CCCceEEEEEcCCCCCEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l 230 (449)
+..+... .+ ....++++++.++++..++.|.++|..+.+....+..... .-..++.+.|. ++.++
T Consensus 99 ~~~i~~g-~~----------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~ly 165 (266)
T 2iwa_A 99 IKNFTHQ-MK----------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVW 165 (266)
T ss_dssp EEEEECC-SS----------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred EEEEECC-CC----------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEE
Confidence 8888654 11 1233566888888888889999999998776544332221 11136778877 55566
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecC-----------CCCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLP-----------HKRVVNSAYFSPSGSKI-LTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~ 291 (449)
+....++.|.+.|..+++....+...+ .....+.|+|+|+++.| +++...+.|.+.++...
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 666568899999998876644443211 11356899999988755 55556888999888654
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=3.1e-08 Score=92.11 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=133.6
Q ss_pred CCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEE-e-eCCCCeEEEEe------------------CCCeE
Q 013086 83 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF-N-PTNDGTVYAAS------------------SDGTV 142 (449)
Q Consensus 83 ~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~v 142 (449)
+||..++++...+..|.+.|+.+.+....+.......+..+++ + |+ +.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC-CcEEEEecccccccCCCCcccccccccCceE
Confidence 4775555555667789999999988777553334556889998 4 88 88888884 24689
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-------------------------------
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG------------------------------- 191 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------------- 191 (449)
.+.|..+.+....+....+ ...++++|+++++++.+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~----------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN----------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTTEEEEEEEESSC----------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCeEEEEEEeCCC----------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 9999999988888876432 45677889999888877443
Q ss_pred -------eEEEEECCC--CCCccceEEeecCCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEccCCCC---------CCc
Q 013086 192 -------FLYLVDART--NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEA---------GSS 252 (449)
Q Consensus 192 -------~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~---------~~~ 252 (449)
.|.+.|.++ +......+... ....++.++| +++++++++ .+..|.++|+.+.+. ...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC---CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 467777776 33211111221 2567899999 888666655 578999999985421 011
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 253 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 253 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.....-......++|+|+|...++.-.|+.|.+||+.+
T Consensus 324 ~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 22223345678899999994344555699999999976
No 235
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.06 E-value=1.5e-07 Score=83.33 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=119.1
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc---cCCceeEEEEeeCCCCeEEEEeC------CCeEE
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---HSCIVNNIRFNPTNDGTVYAASS------DGTVS 143 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~------dg~v~ 143 (449)
...|.+++|+++| +++++. .+ .|.+||..++......... ....+++++++|+ ++++++... .+.|.
T Consensus 89 ~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEE
Confidence 4579999999998 566554 33 4999998877654332211 1246899999998 776665432 24555
Q ss_pred EEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCeEEEEECC--CC-CCcc-ceE-EeecCCCce
Q 013086 144 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDAR--TN-SRSG-EAI-LIHRKGSKV 217 (449)
Q Consensus 144 iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~~-~~~-~~~~~~~~v 217 (449)
.++ +++....... . .....++|+|+++.++++ ..++.|.+||+. ++ .... ..+ ........+
T Consensus 165 ~~~--~g~~~~~~~~-~---------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p 232 (326)
T 2ghs_A 165 HVA--KGKVTKLFAD-I---------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 232 (326)
T ss_dssp EEE--TTEEEEEEEE-E---------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred EEe--CCcEEEeeCC-C---------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC
Confidence 555 4543322111 0 126789999999876555 567899999986 44 3211 111 111123357
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEc-CCCCEEEEeeCC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFS-PSGSKILTTSQD 280 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~l~~~~~d 280 (449)
..+++.+ +++++++...++.|.+||.. ++. +..+ .....+++++|+ +++..|++++..
T Consensus 233 ~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~~---~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 233 DGSVCDA-EGHIWNARWGEGAVDRYDTD-GNH---IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECT-TSCEEEEEETTTEEEEECTT-CCE---EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CeeEECC-CCCEEEEEeCCCEEEEECCC-CCE---EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 7899998 88888877777899999973 222 2222 244579999998 888877665543
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.03 E-value=1.9e-08 Score=89.91 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=133.5
Q ss_pred ccCccEEEEEEeCCCCcEEEEEcC-----CCcEEEEeCcCCeeeEEEec-----ccCCceeEEEEeeCCCCeEEEEe---
Q 013086 71 YHSRRVTCLEFHPTNNHILLSGDK-----KGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAAS--- 137 (449)
Q Consensus 71 ~h~~~V~~~~~~~~~~~~l~t~~~-----d~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~--- 137 (449)
+|...+..++++++| +++++-.. ++.|.+||+.+++....+.. .+...+..++++++++..+++-.
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 567789999999998 66665433 57899999998875554421 12345789999986244445544
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCCCC--------CCC------------cccceeEEEEecCCCEEEEEcCCC-eEEEE
Q 013086 138 SDGTVSCTDLETGLALSLMNVNPNGWH--------GPR------------TWRMLYGMDINPEKGVVLVADNFG-FLYLV 196 (449)
Q Consensus 138 ~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~~~------------~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~ 196 (449)
.++.|.+||+.+++....+..+..... +.. ....+..++|+|+++.|+++...+ .++.+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 578999999998876655432110000 000 012368899999999888877665 66666
Q ss_pred ECCC---CCC-----ccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEc
Q 013086 197 DART---NSR-----SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 268 (449)
Q Consensus 197 d~~~---~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (449)
+... ... ...+ ...........+++++ +++++++...++.|.+||..+++. ..+........+.+++|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKI-ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTC-EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEEC
T ss_pred EHHHhcCCCCChhhhhcce-EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEEC
Confidence 5421 110 0001 1111122466799999 899999998899999999843322 112111224568899999
Q ss_pred CCCCEEEEeeCCCcEEEE
Q 013086 269 PSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 269 ~~~~~l~~~~~dg~i~vw 286 (449)
+++.++++.+..+.+.+|
T Consensus 300 ~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TTSCEEEEECCGGGSGGG
T ss_pred CCCcEEEEeCcccccccc
Confidence 998888777655444333
No 237
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.02 E-value=7.3e-07 Score=74.66 Aligned_cols=214 Identities=11% Similarity=0.027 Sum_probs=135.0
Q ss_pred eeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 68 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 68 ~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.+.+=.+.+..++|+|++..++++...++.|...|.. +.....+..+-......|++.++ +.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD-NQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST-TEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC-CEEEEEECCCCcEEEEEc
Confidence 5556667899999999876777778888999999988 55555553222356788999877 666666556789999988
Q ss_pred CCCce---eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC--CCCccceEEe-----ecCCCce
Q 013086 148 ETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAILI-----HRKGSKV 217 (449)
Q Consensus 148 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~-----~~~~~~v 217 (449)
..... ........ ...........++|+|.++.|+++.......+|.... .......... ...-..+
T Consensus 99 ~~~~~i~~~~~~~~~~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPL---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp CTTCCEEEEEEEECCC---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred CCCCeeeeeeeecccc---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 65542 22222211 1112233489999999998777776654444444431 0000111100 0112357
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CC------CCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH------KRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
.+++++|..+.+++.......|..+|... +....+... +. -.....|+|.++|++.++ ++.+.++.|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 89999997777788877888899999763 222222111 11 135688999999985554 67677776654
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=1.4e-06 Score=74.61 Aligned_cols=245 Identities=9% Similarity=0.106 Sum_probs=140.8
Q ss_pred CcEEEEeCcCCeee----EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccc
Q 013086 96 GQVGVWDFYKVSEK----IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 171 (449)
Q Consensus 96 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (449)
+.|+.+++...... ..........+..++|+++++.++++-..++.|..+++..+.....+... ...
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~ 80 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------LGS 80 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------CCC
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------CCC
Confidence 47888888764321 11111123457899999973444555556789999999765443322111 113
Q ss_pred eeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCC
Q 013086 172 LYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRL 247 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~ 247 (449)
...+++++++..++++ ...+.|.++++...... . ...........++++| ++..|..+.. .+.|..+++...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~-~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--V-LFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E-EECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--E-EEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCC
Confidence 7899999976655554 56679999998653321 1 1222223678999999 5555444443 468888887532
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCce
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL 326 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
....+.. ........+++++++..|+.+. ..+.|.++|+...... .... ....+..++
T Consensus 157 -~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~-----~~~~P~gi~---------- 215 (267)
T 1npe_A 157 -NRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLE-----GLQYPFAVT---------- 215 (267)
T ss_dssp -CCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEE-----CCCSEEEEE----------
T ss_pred -CcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEec-----CCCCceEEE----------
Confidence 2222211 2234578899999877665554 5678999998643210 0000 001111222
Q ss_pred EEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCc
Q 013086 327 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 378 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 378 (449)
..+..+.. +....+.|.++|..+++.+..+..........+ ++.|++.
T Consensus 216 -~d~~~lyv--a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi-~~~~~~~ 263 (267)
T 1npe_A 216 -SYGKNLYY--TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI-TIALSQC 263 (267)
T ss_dssp -EETTEEEE--EETTTTEEEEEETTTTEEEEEECCSSCCCCCCE-EEECSCC
T ss_pred -EeCCEEEE--EECCCCeEEEEeCCCCCceEEEcccccccccee-eecCccC
Confidence 22222210 234457899999999999888864432234555 5666653
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.97 E-value=1.2e-07 Score=78.76 Aligned_cols=184 Identities=9% Similarity=0.032 Sum_probs=126.9
Q ss_pred EEEEEEeCCCCcEEEEEcCCC--cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe-CCCeEEEEeCCCCce
Q 013086 76 VTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLETGLA 152 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~ 152 (449)
...|.|+ ++ .++.+.+.+| .|+++|+.+++....... ..........+. ++.|+... .++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcE
Confidence 5789998 56 6777777766 899999999988877742 233444333344 44555544 588999999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC---CceEEEEEcCCCCCE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPEL 229 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~ 229 (449)
+.++.....+ ..+++++..|+.+..++.|.++|..+.+....+... ..+ ..++.+.|. ++.+
T Consensus 120 ~~ti~~~~eG------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~~--~G~l 184 (262)
T 3nol_A 120 VRSFNYDGEG------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT-AHGEELPELNELEWV--DGEI 184 (262)
T ss_dssp EEEEECSSCC------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEEE--TTEE
T ss_pred EEEEECCCCc------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec-cCCccccccceeEEE--CCEE
Confidence 9998765332 224467787887777889999999998766543222 111 235667776 5666
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecC----------CCCcEEEEEEcCCCCEEEEeeC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLP----------HKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
++..-.+..|.+.|.++++....+...+ .....+.|+|+|+++.|++.+.
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6666678899999998866544443311 1235689999998887777664
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=1.9e-08 Score=89.78 Aligned_cols=253 Identities=9% Similarity=-0.045 Sum_probs=151.3
Q ss_pred ccceeeeccCccEEEEEEeCCCCcEEEEEc----------CCCcEEEEeCcCCeeeEEEeccc------CCceeEEEEee
Q 013086 64 VNCAVIRYHSRRVTCLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNP 127 (449)
Q Consensus 64 ~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~----------~d~~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~~~ 127 (449)
..+..+..-..+ .+.++|++.. ++++. .++.|.+||+.+.+....+..+. ......++++|
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~-lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSD-FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSC-EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred eEEEEEeCCCCC--ceEECCCCCE-EEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 334455444445 7999999954 54443 46889999999998888774220 13467899999
Q ss_pred CCCCeEEEEeC--CCeEEE--EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCC--
Q 013086 128 TNDGTVYAASS--DGTVSC--TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDART-- 200 (449)
Q Consensus 128 ~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-- 200 (449)
+ +++++++.. +..|.+ +|+.+ +..+.... . ..+.|++ ..+++.+.||.+.+.|+.+
T Consensus 134 D-Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-----------~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 134 S-SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-----------C--FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp T-SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-----------C--CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred C-CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-----------c--eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 9 888888864 467888 99877 34443211 1 1123443 3445556778888888876
Q ss_pred ---CCCccceE-EeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC-----------CCCcEEEE
Q 013086 201 ---NSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----------HKRVVNSA 265 (449)
Q Consensus 201 ---~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~ 265 (449)
++...... .......+. . .+ ++..++..+. +.|.+.|+..... ..+..+. .......+
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceee
Confidence 32221000 011111133 3 55 4555555556 8999999864221 1111110 01111226
Q ss_pred EEcCCCCEEEEeeC---------CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceeccc
Q 013086 266 YFSPSGSKILTTSQ---------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISEN 336 (449)
Q Consensus 266 ~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 336 (449)
.++|+++.++++.. ++.+.++|+.+++.+.... ....+..+.|+|+ |+++..
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~---------vg~~p~gi~~s~D---------g~~l~v- 330 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------NGHDSDAIIAAQD---------GASDNY- 330 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------EEEEECEEEECCS---------SSCEEE-
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE---------CCCCcceEEECCC---------CCEEEE-
Confidence 89999998887543 2356699999887533211 1112457888888 442210
Q ss_pred CCCC-CCcceEEEECCCceEEEEEecCc
Q 013086 337 YNGA-ALHPIDFIDITTGQLVAEVMDPN 363 (449)
Q Consensus 337 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 363 (449)
+.. .++.|.++|+.+++.+.++..+.
T Consensus 331 -a~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 331 -ANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp -EEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred -EccCCCCeEEEEECCCCcEEEEEECCC
Confidence 233 47899999999999999987543
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=2e-06 Score=73.76 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=126.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
.....++|++++..++++-..++.|.++++......... .........++++++++.++++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 457899999976567777777889999999765543333 2233567999999973444445555789999998754322
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC---CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC-E
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-L 229 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 229 (449)
...... ......++++|++..|+.+.. .+.|..+++..... .. ...........+++++ ++. +
T Consensus 115 ~~~~~~---------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~-~~~~~~~~P~gia~d~-~~~~l 181 (267)
T 1npe_A 115 VLFDTG---------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RI-LAQDNLGLPNGLTFDA-FSSQL 181 (267)
T ss_dssp EEECSS---------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EE-EECTTCSCEEEEEEET-TTTEE
T ss_pred EEEECC---------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EE-EEECCCCCCcEEEEcC-CCCEE
Confidence 222111 113789999997776666553 46888888764321 11 1112223678999999 655 5
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNL 293 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~ 293 (449)
+++-...+.|..+|+........+. .......++.. +..|+.+. ..+.|..+|..+++.
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 5555567899999987432211111 12234566654 44555444 568999999987764
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.93 E-value=4.1e-07 Score=75.62 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=125.1
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeee
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 155 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 155 (449)
...|.|+. + .++.+.+.+|.|+++|+.+++..... .. .........+.++.+.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 57888874 4 78888889999999999998877766 22 22333223334244555555689999999999999999
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC---CceEEEEEcCCCCCEEEE
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~ 232 (449)
+.....+ .. +++++..|+.+..++.|.++|..+.+....+.. ...+ ..++.+.|. ++.+++.
T Consensus 132 i~~~~eG----------wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe~~--dG~lyan 196 (268)
T 3nok_A 132 TRYSGEG----------WG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-KLRGQPVELINELECA--NGVIYAN 196 (268)
T ss_dssp EECSSCC----------CC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEE--TTEEEEE
T ss_pred EeCCCce----------eE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe-CCCCcccccccccEEe--CCEEEEE
Confidence 8764332 23 336788888888899999999999876654322 2222 145777877 5666666
Q ss_pred EeCCCeEEEEEccCCCCCCceeec-----------CCCCcEEEEEEcCCCCEEEEee
Q 013086 233 CGNDHFARIWDIRRLEAGSSLCDL-----------PHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
...+..|.+.|.++++....+... ......+.|+|+|+++.|++.+
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 656889999999886654443321 1224678999999766555544
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.91 E-value=8.9e-08 Score=94.15 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=101.3
Q ss_pred ccCCceeEEEEeeCCCCeEEEEe-----CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAAS-----SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 189 (449)
+|...+..+.|+|+ +++|+-+. ....|++||+.+++.+.... .. .....++|+ |++.|+.+..
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~---------~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD---------VKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE---------EESCCCEEE-TTTEEEEEES
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC---------ceeccEEEe-CCCEEEEEEe
Confidence 35567889999999 77776432 23579999999998654311 10 013567899 9999988876
Q ss_pred CC-------------eEEEEECCCCCCccceEEee-c-CCCceEEEEEcCCCCCEEEEEeC----CCeEEEEEccCCCCC
Q 013086 190 FG-------------FLYLVDARTNSRSGEAILIH-R-KGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAG 250 (449)
Q Consensus 190 dg-------------~i~i~d~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~ 250 (449)
+. .|++|++.+.......+... . +......+.|+| ++++|+.... ...|+++|+.+....
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 63 49999998765432222211 1 223578899999 8887755432 348999998764321
Q ss_pred CceeecCCCCcEEEEEEcCCCCEEEEeeC-C---CcEEEEeCCCC
Q 013086 251 SSLCDLPHKRVVNSAYFSPSGSKILTTSQ-D---NRLRIWDSIFG 291 (449)
Q Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~vwd~~~~ 291 (449)
......+....... |+++|..|+..+. + +.|..+|+.++
T Consensus 273 -~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 273 -LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp -CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred -eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 12222344444444 6666666554443 2 56777777654
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.90 E-value=2.8e-07 Score=81.75 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=151.7
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
+...+.++...++| . |..++.+ |..+|. ++....... ..........+. +..++.++.++.|..+|.. ++
T Consensus 58 ~~~~~~~~~~~~~g-~-l~v~t~~--l~~~d~-~g~~~~~~~-~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDG-T-IYFGSDK--VYAINP-DGTEKWRFD-TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGEEEECCEETTTT-E-ECCSSCE--EEEECC-CGGGGGGSC-C-----CCEEEE---TTEEEEECTTSEEEEECTT-SC
T ss_pred CCCcccceEEecCC-c-EEEecCc--EEEECC-CCcEEEEEE-CCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CC
Confidence 34456778887777 4 5555544 888886 433322221 112222233333 4567788889999999988 77
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
.......... .+.++...+++. +++++.++.|..+|.. +..... .......+.++...+ ++.+++
T Consensus 128 ~~~~~~~~~~---------~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~d~-~g~l~v 192 (330)
T 3hxj_A 128 EKWRFKTKKA---------IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR---FKTNDAITSAASIGK-DGTIYF 192 (330)
T ss_dssp EEEEEECSSC---------CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEECT-TCCEEE
T ss_pred EEEEEcCCCc---------eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE---EecCCCceeeeEEcC-CCEEEE
Confidence 6665543322 144555666665 6667888999999988 543321 222233466677765 666444
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 311 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (449)
++ +.|..+| .+++. ..........+.++...++|. |.+++.++.|..+|. +++... . .... ....
T Consensus 193 -~t--~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~---~--~~~~-~~~~- 257 (330)
T 3hxj_A 193 -GS--DKVYAIN-PDGTE--KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKW---R--FKTG-KRIE- 257 (330)
T ss_dssp -ES--SSEEEEC-TTSCE--EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEE---E--EECS-SCCC-
T ss_pred -Ee--CEEEEEC-CCCcE--EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeE---E--eeCC-CCcc-
Confidence 44 7899999 44322 222222345677888888775 555666778888874 333211 0 0000 0000
Q ss_pred ceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEE
Q 013086 312 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIW 391 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw 391 (449)
......++ |.+.+ ++.++.|..+|. +++.+..+.... ..+.++ ...++|++++.+.+|.+++.
T Consensus 258 -~~~~~~~~---------g~l~v----~t~~ggl~~~d~-~g~~~~~~~~~~-~~~~~~-~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 258 -SSPVIGNT---------DTIYF----GSYDGHLYAINP-DGTEKWNFETGS-WIIATP-VIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp -SCCEECTT---------SCEEE----ECTTCEEEEECT-TSCEEEEEECSS-CCCSCC-EECTTCCEEEECTTSCEEEE
T ss_pred -ccceEcCC---------CeEEE----ecCCCCEEEECC-CCcEEEEEEcCC-ccccce-EEcCCCEEEEEcCCCeEEEE
Confidence 01111111 33332 566778999996 788777766543 344555 56678876665559999988
Q ss_pred cCCCc
Q 013086 392 RPKEK 396 (449)
Q Consensus 392 ~~~~~ 396 (449)
.....
T Consensus 321 ~~~~~ 325 (330)
T 3hxj_A 321 FNLEH 325 (330)
T ss_dssp EC---
T ss_pred ecccc
Confidence 76543
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.90 E-value=2.9e-07 Score=87.79 Aligned_cols=267 Identities=11% Similarity=-0.015 Sum_probs=150.5
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEeccc-C--CceeE-EEEeeCCCCeEEEEeC------CCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH-S--CIVNN-IRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h-~--~~v~~-~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.|+.+..+|..+++.+....... . ..+.+ .... +..+++++. ++.|..+|..+|+.+..+.
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE---CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 46677789999999999998877653211 0 01221 1111 345666654 7899999999999988776
Q ss_pred cCCCCCC---CC--------------------------CcccceeEEEEecCCCEEEEEcCC----------------Ce
Q 013086 158 VNPNGWH---GP--------------------------RTWRMLYGMDINPEKGVVLVADNF----------------GF 192 (449)
Q Consensus 158 ~~~~~~~---~~--------------------------~~~~~i~~~~~~~~~~~l~~~~~d----------------g~ 192 (449)
....... .+ ........+++.++...++.+..+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 4322100 00 000001235677777777777642 35
Q ss_pred EEEEECCCCCCccceEEeecC--------CCceEEEEEcCCCC---CEEEEEeCCCeEEEEEccCCCCCCceeecC----
Q 013086 193 LYLVDARTNSRSGEAILIHRK--------GSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDLP---- 257 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 257 (449)
|..+|..+++..... ....+ ..++. +.... ++ ..++.++.+|.++++|..+++.........
T Consensus 274 v~Ald~~tG~~~W~~-~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGY-QKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEecCCCcEEEEe-cCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 999999998765432 11111 11221 22223 45 357778889999999998765432221110
Q ss_pred -------CCCcE--------------------------EEEEEcCCCCEEEEeeC-------------------------
Q 013086 258 -------HKRVV--------------------------NSAYFSPSGSKILTTSQ------------------------- 279 (449)
Q Consensus 258 -------~~~~v--------------------------~~~~~~~~~~~l~~~~~------------------------- 279 (449)
...++ ..++++|+..+|++...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 00111 24678888777777653
Q ss_pred ------------CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEE
Q 013086 280 ------------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 347 (449)
Q Consensus 280 ------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~i 347 (449)
+|.|..||+.+|+..-. ...........+.+.+..+. .++.|+.|+.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~------------------~~~~~~~~~~~~~t~gg~v~---~g~~dg~l~a 489 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWT------------------KWEKFAAWGGTLYTKGGLVW---YATLDGYLKA 489 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEE------------------EEESSCCCSBCEEETTTEEE---EECTTSEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEE------------------ecCCCCccceeEEECCCEEE---EEcCCCeEEE
Confidence 35566666665553110 00000000112233344333 4678999999
Q ss_pred EECCCceEEEEEecCccceeceeeecCCCCcEEee
Q 013086 348 IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 348 wd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s 382 (449)
+|..+|+.+.++..........+ .+..+|+.++.
T Consensus 490 ~D~~tG~~lw~~~~~~~~~~~p~-~~~~~G~~yv~ 523 (571)
T 2ad6_A 490 LDNKDGKELWNFKMPSGGIGSPM-TYSFKGKQYIG 523 (571)
T ss_dssp EETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred EECCCCCEEEEEeCCCCcEeeeE-EEEECCEEEEE
Confidence 99999999999886542222333 45567775554
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=7.7e-07 Score=73.37 Aligned_cols=186 Identities=13% Similarity=0.036 Sum_probs=125.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCC--CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 75 RVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
-...+.|+. + .++.+.+.+ ..|+++|+.+++....... ............++.++...-.++.+.+||..+.+.
T Consensus 22 ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 22 FTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence 466899986 4 677777765 4899999999988877642 223333333333244444445689999999999999
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC---CceEEEEEcCCCCCE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPEL 229 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~ 229 (449)
+.++.....+ .. +.+++..|+++..++.|.++|..+.+....+... ..+ ..++.+.+. ++.+
T Consensus 98 ~~ti~~~~~G----------wg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~--~G~l 162 (243)
T 3mbr_X 98 RARFRYPGEG----------WA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV--NGEL 162 (243)
T ss_dssp EEEEECSSCC----------CE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE--TTEE
T ss_pred EEEEeCCCCc----------eE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe--CCEE
Confidence 9998765332 23 3457777888888999999999998766443222 111 245677776 5666
Q ss_pred EEEEeCCCeEEEEEccCCCCCCceeec-----------CCCCcEEEEEEcCCCCEEEEeeC
Q 013086 230 LLSCGNDHFARIWDIRRLEAGSSLCDL-----------PHKRVVNSAYFSPSGSKILTTSQ 279 (449)
Q Consensus 230 l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~ 279 (449)
++....+..|.+.|.++++....+... ......+.|+++|+++.|++.+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666656788999999886654433321 12235689999997777766654
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=7.4e-07 Score=85.02 Aligned_cols=304 Identities=14% Similarity=0.076 Sum_probs=167.2
Q ss_pred EEEEEcC-CCcEEEEeC-cCCeeeEEEecccCCc----------eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeee
Q 013086 88 ILLSGDK-KGQVGVWDF-YKVSEKIVYGNIHSCI----------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 155 (449)
Q Consensus 88 ~l~t~~~-d~~i~vwd~-~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 155 (449)
.++.++. ++.|.-+|. .+++.+.......... -..++.. +..+++++.|+.|..+|..+|+.+..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 3555566 788999999 8888877764221110 0123332 56788888899999999999999887
Q ss_pred eecCCCCCCCCCcccceeE-EEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecC---------------
Q 013086 156 MNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK--------------- 213 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------- 213 (449)
....... ... .+.+ ... .+..+++++. ++.|+.+|..+++...........
T Consensus 141 ~~~~~~~-~~~----~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 141 VEVCDPK-VGS----TLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp EECCCGG-GTC----BCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred ecCCCCC-ccc----eeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 7653210 000 0111 111 2345666654 789999999998765432111000
Q ss_pred -------------------CC-ceEEEEEcCCCCCEEEEEeCC----------------CeEEEEEccCCCCCCceeecC
Q 013086 214 -------------------GS-KVVGLHCNPIQPELLLSCGND----------------HFARIWDIRRLEAGSSLCDLP 257 (449)
Q Consensus 214 -------------------~~-~v~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 257 (449)
.. ....+++.+ ....+..++.+ +.|..+|.++++..-..+...
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 00 001355666 45556555532 358999998866543333222
Q ss_pred CC--------CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCCCCCccc----------------eec-------
Q 013086 258 HK--------RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSREI----------------VHS------- 303 (449)
Q Consensus 258 ~~--------~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------~~~------- 303 (449)
|. .++. +...++|+ .++.++.+|.+.++|..+|+.+...... ...
T Consensus 293 ~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 293 HDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp TCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred CcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 21 2221 22234674 5778888999999999999864211000 000
Q ss_pred --------CCCCccccceeeeeccCCCCCceEEEcc----------ee-cccCCC--------------CCCcceEEEEC
Q 013086 304 --------HDFNRHLTPFRAEWDPKDPSESLAVIGR----------YI-SENYNG--------------AALHPIDFIDI 350 (449)
Q Consensus 304 --------~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~-~~~~~~--------------~~d~~i~iwd~ 350 (449)
....+...-..++++|+.....+..... +. ...+.| ..++.|..||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 0000000001234455432111111100 00 000011 24688999999
Q ss_pred CCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccc
Q 013086 351 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 406 (449)
Q Consensus 351 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~ 406 (449)
.+|+.+.++.... .+... .+...+..++.++ ||.|+.||..+|+++.++....
T Consensus 452 ~tG~~~W~~~~~~--~~~~~-~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 452 TTGKAKWTKWEKF--AAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp TTCCEEEEEEESS--CCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCEEEEecCCC--Cccce-eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 9999998876443 11211 2233455666677 9999999999999888776443
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=3.5e-07 Score=89.14 Aligned_cols=266 Identities=14% Similarity=0.104 Sum_probs=154.2
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccC---CceeE-EEEeeCCCCeEEEEeC------CCeEEEEeCCCCceeeeee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS---CIVNN-IRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~---~~v~~-~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 157 (449)
.++.++.|+.|..+|..+++.+........ ..+.+ .... +..++++.. +|.|..+|..+|+.+..+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV---KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE---CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 467778899999999999988877643211 11111 1111 345555543 5899999999999998876
Q ss_pred cCCCCCCCC----------------------CcccceeEEEEecCCCEEEEEcCCCe-------------------EEEE
Q 013086 158 VNPNGWHGP----------------------RTWRMLYGMDINPEKGVVLVADNFGF-------------------LYLV 196 (449)
Q Consensus 158 ~~~~~~~~~----------------------~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i~ 196 (449)
......... ........+++.++...++++..++. |..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 432110000 00011234688888889999887764 9999
Q ss_pred ECCCCCCccceEEeecCC-------CceEEEEEcCCCCC---EEEEEeCCCeEEEEEccCCCCCCceeecC---------
Q 013086 197 DARTNSRSGEAILIHRKG-------SKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLP--------- 257 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------- 257 (449)
|..+++...... ...+. .+.....+.. ++. .++.++.+|.++++|..+++.........
T Consensus 276 D~~tG~~~W~~~-~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 276 RPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp CTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred cCCCCceeeEee-cCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999988654332 11111 1222222222 443 68889999999999998765431111000
Q ss_pred -CCC------------------------cEEEEEEcCCCCEEEEee----------------------------------
Q 013086 258 -HKR------------------------VVNSAYFSPSGSKILTTS---------------------------------- 278 (449)
Q Consensus 258 -~~~------------------------~v~~~~~~~~~~~l~~~~---------------------------------- 278 (449)
... .-..++++|+..++++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 000 011267888766665422
Q ss_pred --CCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEE
Q 013086 279 --QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 356 (449)
Q Consensus 279 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~ 356 (449)
.+|.|..||+.+|+..-... .. .+ .....+++.|.++. .++.++.|+.||..+|+.+
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~-----~~------------~~-~~~~~~~t~gg~vf---~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVP-----YP------------TH-WNGGTLSTAGNLVF---QGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEE-----ES------------SS-CCCCEEEETTTEEE---EECTTSEEEEEETTTCCEE
T ss_pred CCccceEEEEeCCCCcEEEEcc-----CC------------CC-CcCceeEeCCCEEE---EECCcccchhhhhhcChhh
Confidence 23667777777665421000 00 00 01123344455555 5788999999999999999
Q ss_pred EEEecCccceeceeeecCCCCcEE
Q 013086 357 AEVMDPNITTISPVNKLHPRDDVL 380 (449)
Q Consensus 357 ~~~~~~~~~~v~~v~~~~~~~~~l 380 (449)
..+..........+ .+..+|+..
T Consensus 493 ~~~~~~~~~~~~p~-~~~~~G~~y 515 (668)
T 1kv9_A 493 WQFEAQSGIVAAPM-TFELAGRQY 515 (668)
T ss_dssp EEEECSSCCCSCCE-EEEETTEEE
T ss_pred eEecCCCCcccCce-EEEECCEEE
Confidence 99876642222333 455667633
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.86 E-value=1e-06 Score=84.08 Aligned_cols=305 Identities=15% Similarity=0.096 Sum_probs=169.8
Q ss_pred EEEEEcC-CCcEEEEeC-cCCeeeEEEecccCC----------ceeEEEEeeCCCCe----EEEEeCCCeEEEEeCCCCc
Q 013086 88 ILLSGDK-KGQVGVWDF-YKVSEKIVYGNIHSC----------IVNNIRFNPTNDGT----VYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 88 ~l~t~~~-d~~i~vwd~-~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~----l~s~~~dg~v~iwd~~~~~ 151 (449)
.++.++. ++.|.-+|. .+++.+......... ....+++.|. +.. |+.++.|+.|..+|..+|+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~-~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG-DGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC-CSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEec-CCcceeEEEEEcCCCEEEEEECCCCC
Confidence 3555566 788999999 888888776422111 1123556444 444 8888899999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceeE-EEEecCCCEEEEEc------CCCeEEEEECCCCCCccceEEeecC-----------
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVAD------NFGFLYLVDARTNSRSGEAILIHRK----------- 213 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------- 213 (449)
.+......... ... .+.+ -.+ .+ ..+++++ .+|.|+.+|..+++...........
T Consensus 143 ~~W~~~~~~~~-~~~----~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 143 TVWKVENSDIK-VGS----TLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp EEEEEECCCGG-GTC----BCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred EEEeecCCCCC-ccc----eeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence 98877643210 000 0111 111 13 3555554 3789999999998765332111000
Q ss_pred -----------------------CCce-EEEEEcCCCCCEEEEEeCC----------------CeEEEEEccCCCCCCce
Q 013086 214 -----------------------GSKV-VGLHCNPIQPELLLSCGND----------------HFARIWDIRRLEAGSSL 253 (449)
Q Consensus 214 -----------------------~~~v-~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~ 253 (449)
...+ ..+++.+ ...+++.+..+ +.|..+|.++++..-..
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 0000 1345556 56666766654 37999999887664444
Q ss_pred eecCCC--------CcEEEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCCCCCCCccce--------e-cC--------
Q 013086 254 CDLPHK--------RVVNSAYFS-PSG---SKILTTSQDNRLRIWDSIFGNLDSPSREIV--------H-SH-------- 304 (449)
Q Consensus 254 ~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~-~~-------- 304 (449)
+...|. .++. +... .+| ..++.++.+|.+.++|..+|+.+-...... . ..
T Consensus 295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 333332 1221 2222 467 467778899999999999998643211000 0 00
Q ss_pred --------------CCCccccceeeeeccCCCCCceEEE---------------cceec-c---cCC--CC------CCc
Q 013086 305 --------------DFNRHLTPFRAEWDPKDPSESLAVI---------------GRYIS-E---NYN--GA------ALH 343 (449)
Q Consensus 305 --------------~~~~~~~~~~~~~~~~~~~~~~~~~---------------g~~~~-~---~~~--~~------~d~ 343 (449)
...+...--.++++|+.....+... |.... . .+. .+ ..+
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 0000000012344544221111100 00000 0 000 11 458
Q ss_pred ceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhcc
Q 013086 344 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 405 (449)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~ 405 (449)
.|.-||+.+|+.+.+..... ..... .....+.++..++ ||.|+.||.++|+++.+++..
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEeEecCCC-CccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 89999999999998875432 11111 1233456666677 999999999999988877543
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.85 E-value=3.2e-06 Score=80.73 Aligned_cols=310 Identities=11% Similarity=0.041 Sum_probs=167.2
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCc--------eeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeec
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI--------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 158 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 158 (449)
.+++ ++.++.|.-+|..+++.+..+....... -..+++. +..++.++.|+.|..+|..+|+.+.....
T Consensus 70 ~vyv-~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 70 VIYV-TASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEE-EETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEE-EcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4444 4443448899999998887764221110 0222332 56788888999999999999999887765
Q ss_pred CCCCCCCCCcccceeEEEEe-cCCC-EEEEEc------CCCeEEEEECCCCCCccceEEee---------------cC--
Q 013086 159 NPNGWHGPRTWRMLYGMDIN-PEKG-VVLVAD------NFGFLYLVDARTNSRSGEAILIH---------------RK-- 213 (449)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~---------------~~-- 213 (449)
..... ........ .+.-. .+++ .++++. .++.|+.+|..+++......... ..
T Consensus 146 ~~~~~-~~~~~~sP-~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 146 ADHGA-GYTMTGAP-TIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp SCGGG-TCBCCSCC-EEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCc-CcccccCC-EEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 43110 00000000 11100 1233 555554 37899999999887553211000 00
Q ss_pred ---------------------CCceEEEEEcCCCCCEEEEEeC--------------------C----CeEEEEEccCCC
Q 013086 214 ---------------------GSKVVGLHCNPIQPELLLSCGN--------------------D----HFARIWDIRRLE 248 (449)
Q Consensus 214 ---------------------~~~v~~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~ 248 (449)
...-..+++.| ...+++.+.. | +.|..+|..+++
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred ccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 00001345666 5566665553 2 589999998876
Q ss_pred CCCceeecCCC--------CcEEEEEEc-CCCC---EEEEeeCCCcEEEEeCCCCCCCCCCccc----------------
Q 013086 249 AGSSLCDLPHK--------RVVNSAYFS-PSGS---KILTTSQDNRLRIWDSIFGNLDSPSREI---------------- 300 (449)
Q Consensus 249 ~~~~~~~~~~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------- 300 (449)
..-..+...|. .++. +... .+|+ .++.++.+|.++++|..+|+.+-.....
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCE
Confidence 64444332232 1221 2222 4674 7888999999999999998864211100
Q ss_pred eecCCCC---------------------ccccceeeeeccCCCCCceEEE---------------cceec-cc-----CC
Q 013086 301 VHSHDFN---------------------RHLTPFRAEWDPKDPSESLAVI---------------GRYIS-EN-----YN 338 (449)
Q Consensus 301 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~---------------g~~~~-~~-----~~ 338 (449)
.....+. +...--.++++|......+... |.... .. ..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0000000 0000002344444322111110 00000 00 00
Q ss_pred CCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecC-CCeEEEEcCCCchhhhhhhccce
Q 013086 339 GAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 407 (449)
Q Consensus 339 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~s-dg~i~iw~~~~~~~~~~~~~~~~ 407 (449)
...++.|.-||+.+|+.+.+...... .... .....+.+++.|+ ||.|+.||.++|+++.+++....
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g--~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHLP-LWAG--VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESSC-CCSC--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCcceEEEEECCCCCEEEEecCCCC-Cccc--ceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 12468899999999999988765431 1111 1223456677788 99999999999999988765543
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=3e-08 Score=88.10 Aligned_cols=267 Identities=11% Similarity=0.065 Sum_probs=149.8
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeee
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 157 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 157 (449)
+..+..++ . +..++.++.|..|| .++...... ......+.++...++ + .|+.++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g-~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~-g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNG-T-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD-G-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTS-C-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT-T-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCC-e-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC-C-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 34555666 3 66777788899999 776654443 223344566666554 4 56666555 888886 666554443
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 237 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 237 (449)
..... .....+. +..+.+++.++.+..+|.. ++... ........+.++...+ ++. +..++.++
T Consensus 95 ~~~~~---------~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~-~g~-l~vgt~~~ 157 (330)
T 3hxj_A 95 TKKAI---------VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSE-DGT-IYVGSNDN 157 (330)
T ss_dssp C--------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECT-TSC-EEEECTTS
T ss_pred CCCCc---------ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcC-CCE-EEEEcCCC
Confidence 22111 2222233 6678888889999999988 54322 2222222455566665 555 66677789
Q ss_pred eEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeee
Q 013086 238 FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 317 (449)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (449)
.|..||.. ++...... .....+.++...+++.+++.. +.|..|| .+++.... .. ... .....+..
T Consensus 158 ~l~~~d~~-g~~~~~~~--~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~-----~~--~~~-~~~~~~~~ 222 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK--TNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWN-----FY--AGY-WTVTRPAI 222 (330)
T ss_dssp EEEEECTT-SCEEEEEE--CSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEE-----EC--CSS-CCCSCCEE
T ss_pred EEEEECCC-CCEeEEEe--cCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEE-----Ec--cCC-cceeceEE
Confidence 99999986 33322221 234456677777788755544 7899999 55543110 00 000 00112222
Q ss_pred ccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCch
Q 013086 318 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
.++ |.+.+ ++.++.|..+|. +++.+..+.... .....+ .+.+++.+.+...+|.|..++. +++
T Consensus 223 ~~~---------g~l~v----~t~~~gl~~~~~-~g~~~~~~~~~~-~~~~~~-~~~~~g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 223 SED---------GTIYV----TSLDGHLYAINP-DGTEKWRFKTGK-RIESSP-VIGNTDTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp CTT---------SCEEE----EETTTEEEEECT-TSCEEEEEECSS-CCCSCC-EECTTSCEEEECTTCEEEEECT-TSC
T ss_pred CCC---------CeEEE----EcCCCeEEEECC-CCCEeEEeeCCC-Cccccc-eEcCCCeEEEecCCCCEEEECC-CCc
Confidence 322 33332 455667888874 666666665443 223333 4556666555444889999996 666
Q ss_pred hhhhh
Q 013086 398 ELVEQ 402 (449)
Q Consensus 398 ~~~~~ 402 (449)
.+..+
T Consensus 286 ~~~~~ 290 (330)
T 3hxj_A 286 EKWNF 290 (330)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.82 E-value=1.6e-06 Score=82.64 Aligned_cols=262 Identities=12% Similarity=0.046 Sum_probs=150.8
Q ss_pred EEEEcCCCcEEEEeCcCCeeeEEEecccC---CceeE-EEEeeCCCCeEEEEe------CCCeEEEEeCCCCceeeeeec
Q 013086 89 LLSGDKKGQVGVWDFYKVSEKIVYGNIHS---CIVNN-IRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMNV 158 (449)
Q Consensus 89 l~t~~~d~~i~vwd~~~~~~~~~~~~~h~---~~v~~-~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~ 158 (449)
++.++.|+.+..+|..+++.+........ ..+.+ .... +..+++++ .+|.|+.+|..+|+.+..+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 66777899999999999988776532110 01221 1121 33555555 379999999999999887765
Q ss_pred CCCCCCC---C--------------------------CcccceeEEEEecCCCEEEEEcCC----------------CeE
Q 013086 159 NPNGWHG---P--------------------------RTWRMLYGMDINPEKGVVLVADNF----------------GFL 193 (449)
Q Consensus 159 ~~~~~~~---~--------------------------~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i 193 (449)
....... + .....-..+++.++..+++.+..+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 4321000 0 000001245667788888888765 389
Q ss_pred EEEECCCCCCccceEEeecCCC-------ceEEEEEc-CCCC---CEEEEEeCCCeEEEEEccCCCCCCceeecC-----
Q 013086 194 YLVDARTNSRSGEAILIHRKGS-------KVVGLHCN-PIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDLP----- 257 (449)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 257 (449)
..+|..+++..... +...+.. ...-+... . ++ ..++.++.+|.++++|.++++.........
T Consensus 281 ~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 281 FGRDADTGEAKFGY-QKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEeCCCCceeeEe-ecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 99999998765432 2221110 11112222 2 55 467778899999999998765432221100
Q ss_pred ------CCCc--------------------------EEEEEEcCCCCEEEEeeCC-------------------------
Q 013086 258 ------HKRV--------------------------VNSAYFSPSGSKILTTSQD------------------------- 280 (449)
Q Consensus 258 ------~~~~--------------------------v~~~~~~~~~~~l~~~~~d------------------------- 280 (449)
...+ -..++++|+..++++...+
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 0011 1246788877777665433
Q ss_pred --------------CcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccC----CCCCceEEEcceecccCCCCCC
Q 013086 281 --------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK----DPSESLAVIGRYISENYNGAAL 342 (449)
Q Consensus 281 --------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~d 342 (449)
|.|..||+.+|+. .|... .....+++.+..+. .++.|
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~----------------------~W~~~~~~~~~~g~~~tagg~vf---~gt~d 493 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITGDY----------------------KWEKMERFAVWGGTMATAGDLVF---YGTLD 493 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCE----------------------EEEEEESSCCCSBCEEETTTEEE---EECTT
T ss_pred ccCCcCCcccCCCcCeEEEEECCCCCE----------------------EeEecCCCCccCcceEecCCEEE---EECCC
Confidence 3444444444432 22211 01122344454444 57889
Q ss_pred cceEEEECCCceEEEEEecCccceeceeeecCCCCcEEe
Q 013086 343 HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 381 (449)
Q Consensus 343 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 381 (449)
+.|+.||..+|+.+.++..+.......+ .|..+|+..+
T Consensus 494 g~l~A~D~~tG~~lW~~~l~~g~~~~P~-~y~~~G~qyv 531 (599)
T 1w6s_A 494 GYLKARDSDTGDLLWKFKIPSGAIGYPM-TYTHKGTQYV 531 (599)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEE
T ss_pred CeEEEEECCCCCEEEEeeCCCCcEeccE-EEEeCCEEEE
Confidence 9999999999999999876543333334 5667776443
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.81 E-value=5.6e-06 Score=73.08 Aligned_cols=191 Identities=14% Similarity=0.084 Sum_probs=113.4
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc------------------cCCceeEEEEeeCCCCeEEE
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------------------HSCIVNNIRFNPTNDGTVYA 135 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~~l~s 135 (449)
..-.+++|++++ +++.++..++.|..|+..+.......... ....+..+++.++ ...|+.
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~-~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ-NNQLYI 96 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT-TTEEEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC-CCcEEE
Confidence 345678899988 66778888899999998765433221100 1135788999974 335555
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcC-----------------CCeEEEEE
Q 013086 136 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADN-----------------FGFLYLVD 197 (449)
Q Consensus 136 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d 197 (449)
+...+.|..+|..++......... .. ........+++.+ ++++.++-.. ++.|..||
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~-~~----~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSV-DG----VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEE-TT----EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EECCCCEEEEeCCCCEEEEecccC-CC----CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 655556888887765432211110 00 0112367899999 8887666432 37788998
Q ss_pred CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE
Q 013086 198 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 276 (449)
..++.... .... ......++++| +++.|..+ +..+.|..|++...............+ ...+++.++|++.++
T Consensus 172 ~~~~~~~~-~~~~---~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 172 PSTKETTL-LLKE---LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp TTTTEEEE-EEEE---ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred CCCCEEEE-eccC---CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 87654221 1111 12466799999 88755444 566899999987532211111001223 677888888875555
Q ss_pred e
Q 013086 277 T 277 (449)
Q Consensus 277 ~ 277 (449)
.
T Consensus 246 ~ 246 (322)
T 2fp8_A 246 S 246 (322)
T ss_dssp E
T ss_pred e
Confidence 4
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=6.5e-06 Score=78.63 Aligned_cols=271 Identities=11% Similarity=0.021 Sum_probs=151.0
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEeccc-C--Ccee-EEEEeeC--CCC-eEEEEe------CCCeEEEEeCCCCceee
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH-S--CIVN-NIRFNPT--NDG-TVYAAS------SDGTVSCTDLETGLALS 154 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h-~--~~v~-~~~~~~~--~~~-~l~s~~------~dg~v~iwd~~~~~~~~ 154 (449)
.++.++.|+.|.-+|..+++.+....... . ..+. ......+ +++ .+++++ .++.|..+|..+|+.+.
T Consensus 119 ~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 46677789999999999998877663221 0 0111 1111111 122 566654 37899999999999887
Q ss_pred eeecCCCCC-------------CCCC-------------------cccceeEEEEecCCCEEEEEcC-------------
Q 013086 155 LMNVNPNGW-------------HGPR-------------------TWRMLYGMDINPEKGVVLVADN------------- 189 (449)
Q Consensus 155 ~~~~~~~~~-------------~~~~-------------------~~~~i~~~~~~~~~~~l~~~~~------------- 189 (449)
......... .+.. ....-..+++.|+..+++++..
T Consensus 199 ~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~ 278 (582)
T 1flg_A 199 MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAK 278 (582)
T ss_dssp EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCT
T ss_pred ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccC
Confidence 654321000 0000 0001134677788788877663
Q ss_pred -------C----CeEEEEECCCCCCccceEEeecCC-------CceEEEEEc-CCCC---CEEEEEeCCCeEEEEEccCC
Q 013086 190 -------F----GFLYLVDARTNSRSGEAILIHRKG-------SKVVGLHCN-PIQP---ELLLSCGNDHFARIWDIRRL 247 (449)
Q Consensus 190 -------d----g~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~-~~~~---~~l~~~~~dg~i~iwd~~~~ 247 (449)
| +.|..+|..+++..... +...+. ....-+... . ++ ..++.++.+|.++++|..++
T Consensus 279 gg~~~~~d~~~~~~v~AlD~~TG~~~W~~-q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 279 GGNPHDYDSLYTSGQVGVDPSSGEVKWFY-QHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TSCSTTCCCTTCSEEEEECTTTCCEEEEE-ESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCcccccCCcccceEEEEeCCCCCEEEEE-eCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCCC
Confidence 2 58999999998865432 111111 011112221 2 45 37888999999999998876
Q ss_pred CCCCceeecC-----------CCC--------------------------------cEEEEEEcCCCCEEEEeeC-----
Q 013086 248 EAGSSLCDLP-----------HKR--------------------------------VVNSAYFSPSGSKILTTSQ----- 279 (449)
Q Consensus 248 ~~~~~~~~~~-----------~~~--------------------------------~v~~~~~~~~~~~l~~~~~----- 279 (449)
+......... ... ....++++|+..++++...
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 5422111100 000 0124567776555555432
Q ss_pred ----------------------------CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcc
Q 013086 280 ----------------------------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 331 (449)
Q Consensus 280 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 331 (449)
+|.|..||+.+|+..-... .. .| .....+++.+.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-----~~------------~~-~~~g~~~tagg 498 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-----EH------------LP-LWAGVLATAGN 498 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-----ES------------SC-CCSCCEEETTT
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEec-----CC------------CC-CcccceEeCCC
Confidence 4667777777665421000 00 00 01123334455
Q ss_pred eecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEee
Q 013086 332 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 382 (449)
Q Consensus 332 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s 382 (449)
++. .|+.|+.++.||..+|+.+.++..........+ .|..+|+..++
T Consensus 499 lvf---~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~-~y~~~G~qYv~ 545 (582)
T 1flg_A 499 LVF---TGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI-TWEQDGEQYLG 545 (582)
T ss_dssp EEE---EECTTSEEEEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred EEE---EECCCCcEEEEECCCCCEEEEecCCCCcccCce-EEEECCEEEEE
Confidence 544 578899999999999999999987653222334 56678874443
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=2.6e-06 Score=71.80 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=123.3
Q ss_pred ceeEEEEeeCCCCeEEEEeC--CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 119 IVNNIRFNPTNDGTVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
....+.|+++ +.++++.+. ++.|++.|+.+++.+..+......+ ...+++.. +.+.++.-.++.+.++
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f--------geGi~~~g-~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF--------GEGLTLLN-EKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--------EEEEEEET-TEEEEEETTCSEEEEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--------eEEEEEeC-CEEEEEEecCCEEEEE
Confidence 3689999987 655544443 5799999999999998887643321 33455542 2444455678899999
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCC---CcEEEEEEcCCCCE
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK---RVVNSAYFSPSGSK 273 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 273 (449)
|..+.+....+ ... .. .- ..+++ ++..++++..++.|.++|..+.+....+..-... ..++.+.|. ++..
T Consensus 92 D~~t~~v~~~i-~~g-~~-~g--~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 92 DRRTLSNIKNF-THQ-MK-DG--WGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp ETTTTEEEEEE-ECC-SS-SC--CEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred ECCCCcEEEEE-ECC-CC-Ce--EEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 99987765432 211 11 22 23445 5565556667889999999876554444322111 236778888 6755
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCcccee-----cCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEE
Q 013086 274 ILTTSQDNRLRIWDSIFGNLDSPSREIVH-----SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 348 (449)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iw 348 (449)
.+....++.|.+.|..+++.......... .........+..++|+|+. .+++. ++...+.|.+.
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~--------~~lfV---Tgk~~~~v~~i 233 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN--------KRIFV---TGKLWPKLFEI 233 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT--------TEEEE---EETTCSEEEEE
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC--------CEEEE---ECCCCCeEEEE
Confidence 55555678999999999886432211000 0000111233578888873 12222 35555667776
Q ss_pred ECCC
Q 013086 349 DITT 352 (449)
Q Consensus 349 d~~~ 352 (449)
++..
T Consensus 234 ~l~~ 237 (266)
T 2iwa_A 234 KLHL 237 (266)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6644
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=2.1e-06 Score=83.74 Aligned_cols=201 Identities=8% Similarity=-0.009 Sum_probs=111.2
Q ss_pred EEEEeC-CCCcEEEEEcCCC-----------cEEEEeCcCCeee--EEEecccCCceeEEEEeeCCCCeEEEEeC-CCeE
Q 013086 78 CLEFHP-TNNHILLSGDKKG-----------QVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTV 142 (449)
Q Consensus 78 ~~~~~~-~~~~~l~t~~~d~-----------~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v 142 (449)
++++.+ ++ ++++.|+.+. .+.+||..+.... ......+.....++++..+ +.+++.|+. +..+
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-SCEEEECSSSTTCE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC-CCEEEeCCCCCCce
Confidence 456677 66 7888876543 5889998876532 2222223334455777777 888888884 5689
Q ss_pred EEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CC-----CeEEEEECCCCCCccce----EEeec
Q 013086 143 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF-----GFLYLVDARTNSRSGEA----ILIHR 212 (449)
Q Consensus 143 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~ 212 (449)
.+||..+++....-..+.. ..-.+++..+++++++.|+ .+ ..+.+||..+....... .....
T Consensus 268 ~~yd~~t~~W~~~~~~~~~--------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVA--------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 339 (656)
T ss_dssp EEEEGGGTEEEECCCCSSC--------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred EEecCcCCceeECCCCCcc--------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence 9999988765443222111 1133455667899999988 34 47899999875421100 00000
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCC---------eEEEEEccCCCCCCceeecCC-------CCcEEEEEEcC-CCCEEE
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDH---------FARIWDIRRLEAGSSLCDLPH-------KRVVNSAYFSP-SGSKIL 275 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~ 275 (449)
.. . ...+.. ++..++.|+.+| .+..||..+..-......... ...-.++.|.. ++++++
T Consensus 340 ~~-~--~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 340 AD-K--QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp CC-T--TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred cc-c--cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 00 0 011222 455556665444 467788765332111111000 11223444544 777888
Q ss_pred EeeCCC-----------cEEEEeCCCCC
Q 013086 276 TTSQDN-----------RLRIWDSIFGN 292 (449)
Q Consensus 276 ~~~~dg-----------~i~vwd~~~~~ 292 (449)
.|+.++ .|.+||..+..
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCC
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCC
Confidence 887543 57777776544
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=2.4e-06 Score=71.07 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=97.9
Q ss_pred ceeEEEEeeCCCCeEEEEeCCC--eEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEE-EcCCCeEEE
Q 013086 119 IVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYL 195 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i 195 (449)
-...+.|+ + +.++.+.+.+| .|+++|+.+++.+..+..... .....+.+++..|.. .-.++.+.+
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----------~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----------YFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----------CCEEEEEEETTEEEEEESSSSEEEE
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCc----------cceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34788898 5 66677777665 899999999999998876543 223223334555544 456889999
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCC---CcEEEEEEcCCCC
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK---RVVNSAYFSPSGS 272 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 272 (449)
||..+.+....+ .... .-..++ + ++..|+....++.|.++|..+.+....+...... ..++.+.|. +|+
T Consensus 112 ~D~~t~~~~~ti-~~~~---eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 112 WNIRNLRQVRSF-NYDG---EGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EETTTCCEEEEE-ECSS---CCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EECccCcEEEEE-ECCC---CceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 999998766433 2211 122333 3 5566666556788999999876654444332112 234556775 665
Q ss_pred EEEEeeCCCcEEEEeCCCCCC
Q 013086 273 KILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..+..-.++.|.+.|..+|+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBE
T ss_pred EEEEEccCCeEEEEECCCCcE
Confidence 444444566777777776654
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.65 E-value=0.00018 Score=72.03 Aligned_cols=293 Identities=10% Similarity=0.086 Sum_probs=167.5
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec------ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEe
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN------IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 146 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 146 (449)
...|.++...+++ .+. .|+.++-+.+||..+......... .....|.++...++ +. |..|+.+ -|.+||
T Consensus 214 ~~~i~~i~~d~~g-~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~-lWigt~~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPT-RIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQ-NR-LWIGTFN-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEETT-EEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTT-SC-EEEEESS-CEEEEE
T ss_pred CCeeEEEEEcCCC-CEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCC-CC-EEEEeCC-hhheEc
Confidence 4568888888887 444 444444588999877654333211 12356899988876 54 4455555 588999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe-----ecCCCceEEEE
Q 013086 147 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-----HRKGSKVVGLH 221 (449)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~ 221 (449)
..++............ ..-....|.++...++|. |.+|+.++-|..|+........ ... .-....|.++.
T Consensus 289 ~~~~~~~~~~~~~~~~--~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~--~~~~~~~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 289 EGTDSFASYSSNPVEN--GSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN--IRNIPYKNSLSDNVVSCIV 363 (795)
T ss_dssp TTTTEEEEECCCTTST--TSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE--ECCCTTSSSCSCSSEEEEE
T ss_pred CCCCeEEEEecCCCCC--CCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE--EcCCCCCCCCCCCeeEEEE
Confidence 8877654332211110 111123488998888776 5567777778888876543210 000 00123688998
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec------CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
..+ ++. |..|+.++-|..||..+.......... -....|.++...+++..|..|+.++-|..||..+++...
T Consensus 364 ~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~ 441 (795)
T 4a2l_A 364 EDK-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN 441 (795)
T ss_dssp ECT-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred ECC-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE
Confidence 887 655 555777778999997653221110000 023568999998888856677777789999988765421
Q ss_pred CCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEec-----Cccceecee
Q 013086 296 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-----PNITTISPV 370 (449)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~v 370 (449)
.... .... .......+...++ |.+.+ |+. +-|.+||..+++....... -....+.++
T Consensus 442 ~~~~---~~~l-~~~~v~~i~~d~~---------g~lwi----gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 503 (795)
T 4a2l_A 442 FNQR---NSQL-VNENVYAILPDGE---------GNLWL----GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL 503 (795)
T ss_dssp ECTT---TSCC-SCSCEEEEEECSS---------SCEEE----EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEE
T ss_pred eecC---CCCc-CCCeeEEEEECCC---------CCEEE----Eec-CceeEEeCCCCeEEEccccccccccCCceEEEE
Confidence 0000 0000 0011123333333 44333 333 3488899887765432211 112345666
Q ss_pred eecCCCCcEEeecCCCeEEEEcCCCch
Q 013086 371 NKLHPRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 371 ~~~~~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
...++|++.+... +-|..|+..+++
T Consensus 504 -~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 504 -FRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp -EECTTCCEEEEES-SCEEEEEEETTE
T ss_pred -EECCCCCEEEEeC-CceEEEeCCCCe
Confidence 6778888766655 557788876554
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.64 E-value=6.8e-05 Score=65.53 Aligned_cols=199 Identities=14% Similarity=0.046 Sum_probs=119.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC--CeEEEEeCCCCc
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETGL 151 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~ 151 (449)
.....++|+++| +++++-..++.|..||...... .... ....+..+++.++ ++++++.... ..|..+|..+++
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-~~~~--~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-IHAT--VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-EEEE--CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-EEEe--CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence 457889999998 6777776789999999876432 2222 3456899999998 7765554432 247777877777
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceE-------EeecCCCceEEEEEcC
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-------LIHRKGSKVVGLHCNP 224 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~~~~ 224 (449)
.......... .....++..+++..+++-..++.|+++|...+....... .....-...+.+ +|
T Consensus 107 ~~~~~~~~~~--------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 107 VETLLTLPDA--------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEEEEECTTC--------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEEEEeCCCc--------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 6443332111 113445545555445555568899999986531100000 000011134555 66
Q ss_pred CCCC-EEEEEeCCCeEEEEEccC-CCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 225 IQPE-LLLSCGNDHFARIWDIRR-LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 225 ~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
++. ++++-...+.|..|++.. +.... ...+........++++++|+++++....+.|.++|..
T Consensus 177 -dg~~lyv~d~~~~~I~~~~~~~~g~~~~-~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 177 -FGNFLYVSNTEKMLLLRIPVDSTDKPGE-PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp -ETTEEEEEETTTTEEEEEEBCTTSCBCC-CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred -CCCEEEEEeCCCCEEEEEEeCCCCCCCc-cEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 555 455555678999999864 22111 1111111345668999999887777778899999974
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.63 E-value=0.00014 Score=64.66 Aligned_cols=200 Identities=8% Similarity=0.047 Sum_probs=122.2
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 151 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 151 (449)
+.+..+|.+..++. .++++ . ...|+..++......... . ....+..++|++..+.++++-...+.|..+++..+.
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~-~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEE-C-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCcccccccCc-eeEee-c-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 34455666666644 34433 3 356888888765544433 2 344588999998734444454567889999988665
Q ss_pred eeeeeecCCCCCCCCCcccceeEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 152 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
....+.... .....+++.+.+..| ++-...+.|.+.++...... . ...........++++|..+.++
T Consensus 107 ~~~~~~~~~---------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~-l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 107 VEEVVSTGL---------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--V-LLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp CEEEECSSC---------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E-EECTTCSCEEEEEEETTTTEEE
T ss_pred ceEEEeCCC---------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE--E-EEeCCCCCcceEEEecCcCeEE
Confidence 433322111 125788998865544 55556789999998754321 1 2222334678999998455555
Q ss_pred EEEeCC-CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 231 LSCGND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 231 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
++-... +.|..+++..... ..+. ...-...+.|+++|++..|..+. ..+.|..+|+..
T Consensus 175 ~td~~~~~~I~r~~~dG~~~-~~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGR-RIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEECSSSCEEEEEETTSCSC-EESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeccCCCCEEEEEeCCCCCc-EEEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 555555 7888888764211 1111 12234578999998766665554 467899999864
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.63 E-value=0.00012 Score=64.26 Aligned_cols=207 Identities=13% Similarity=0.018 Sum_probs=127.2
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC---eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
.....+++|++.+.+++++-...+.|..+++.+. .....+..........+++.+.++.++++-...+.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3457899999876577777777889999998761 2222222223345688999876244555556688999999875
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC--CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
......+.... .....+++.|.+..|+.+... +.|..+++...... . .....-.....+++++..+
T Consensus 109 ~~~~~~~~~~~---------~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~--~-~~~~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 109 VKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDLLSG 176 (316)
T ss_dssp SSEEEEEECTT---------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--E-EECSSCSCEEEEEEETTTT
T ss_pred CceEEEEECCC---------CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE--E-EEECCCCCceEEEEeccCC
Confidence 44333222111 137899999977766665543 68888887543211 1 1122234688999998344
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.++++-+..+.|..+|+.. .....+... ........+++. .+.++++-...+.|..++..+|+.
T Consensus 177 ~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 5555555677999999874 222223221 122345677775 355555555678899999877764
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=4.9e-06 Score=69.22 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=114.8
Q ss_pred eeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 013086 172 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 172 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 251 (449)
...+.|+ ++.++.+.+.+|.|+.+|+.+++..... .... ..-..+++. .+.+.++.-.++.+.+||..+.+...
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 6788887 4667777888899999999999887654 2221 122345554 45666666678999999998866655
Q ss_pred ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccc-cceeeeeccCCCCCceEEEc
Q 013086 252 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIG 330 (449)
Q Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 330 (449)
.+... ..-..++ ++++.|+.+..++.|.++|..+.+...... ........ ....+.|. .|
T Consensus 131 ti~~~---~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~----V~~~g~~v~~lNeLe~~----------dG 191 (268)
T 3nok_A 131 TTRYS---GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ----VKLRGQPVELINELECA----------NG 191 (268)
T ss_dssp EEECS---SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE----CEETTEECCCEEEEEEE----------TT
T ss_pred EEeCC---CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE----eCCCCcccccccccEEe----------CC
Confidence 55432 2223344 578888887778999999998876532111 00000000 00112222 14
Q ss_pred ceecccCCCCCCcceEEEECCCceEEEEEecCc------------cceeceeeecCCCCc-EEeecC
Q 013086 331 RYISENYNGAALHPIDFIDITTGQLVAEVMDPN------------ITTISPVNKLHPRDD-VLASGS 384 (449)
Q Consensus 331 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~v~~v~~~~~~~~-~l~s~s 384 (449)
+..+ ....++.|.+.|..+|+.+..+.... ......| ||+|+++ +++||-
T Consensus 192 ~lya---nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI-A~dp~~~rlfVTGK 254 (268)
T 3nok_A 192 VIYA---NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI-AVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEE---EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE-EECTTTCCEEEEET
T ss_pred EEEE---EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE-EEcCCCCEEEEeCC
Confidence 4333 33456789999999999999887431 1345667 8999754 555554
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=0.0001 Score=66.65 Aligned_cols=198 Identities=8% Similarity=0.038 Sum_probs=119.9
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
+.-.|.+..+.. . |+.+. ...|+..++......... . ....+..++|++..+.++++-...+.|..+++..+...
T Consensus 77 d~~~C~~~~~~~-~-l~~~~-~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 77 DRRSCKALGPEP-V-LLFAN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp TSSCEEECSSCC-E-EEEEC-BSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCCeECCccccc-e-eEeec-CccceeeccCCCcEEEEe-c-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 344565555543 3 43333 357888998776554443 2 34558899999873445555556789999998876543
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
..+.... .....+++.+.+..| ++-...+.|.+.++...... . ...........+++.|..+.++++
T Consensus 152 ~~~~~~~---------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~-l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 152 EVVSTGL---------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--V-LLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp EEECSSC---------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--E-EECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCC---------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--E-eecCCCCCCcEEEEEcCCCeEEEe
Confidence 3322111 125678888765555 44556678888887654321 1 222233468899999844555555
Q ss_pred EeCC-CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 233 CGND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 233 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
-... +.|..+++..... ..+. ...-...+.|+|+|++..|+.+. ..+.|..+|+..
T Consensus 220 d~~~~~~I~r~~~dG~~~-~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSGR-RIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp ECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred ccCCCCEEEEEeCCCCCc-EEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 4444 7888888764221 1121 12334578999998666665554 467899999753
No 264
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.56 E-value=4.9e-05 Score=69.79 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=94.4
Q ss_pred ceeEEEEeeC-CCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-----e
Q 013086 119 IVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----F 192 (449)
Q Consensus 119 ~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~ 192 (449)
....|+|+|+ +...|+.+...+.|+.+|..++........ ......++++++++ |+++...+ .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 4678999983 245566665558899999987766544321 12388999999999 54444321 2
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
+..++......... ... .......++++|.++.++++-..++.|+.+|..++.....+...+....-..++|+|+++
T Consensus 209 v~~~~~~~~~~~~~--~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 209 IYLFTRASGFTERL--SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEECGGGTTCCEE--EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred EEEEECCCCeeccc--ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 33333322211111 111 123567788998556666666677889999986433211222222222334799999999
Q ss_pred EEEEe-eCCCcEEEEeCC
Q 013086 273 KILTT-SQDNRLRIWDSI 289 (449)
Q Consensus 273 ~l~~~-~~dg~i~vwd~~ 289 (449)
+|+.+ ...+.|+.+++.
T Consensus 286 ~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCCEEEEEeCC
Confidence 55554 456789998865
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.56 E-value=0.0003 Score=70.38 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=165.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec-----ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
...|.++...++| . |-.|+.++-|..|+..+......... .....|.++...++ + .|..|+.++-|..|+.
T Consensus 309 ~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQG-G-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTS-C-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECT
T ss_pred CCcEEEEEEeCCc-C-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcC
Confidence 3579999999988 3 55677777799998765443222110 12456888888765 4 4666777777999998
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee-----cCCCceEEEEE
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH-----RKGSKVVGLHC 222 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~ 222 (449)
.++............ ...-....|.++...+++..|.+|+.++-|..||..+++.. ... .....|.++..
T Consensus 385 ~~~~~~~~~~~~~~~-~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~----~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 385 ITQRFTSYTLQEDES-ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE----NFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp TTCCEEEECCC-------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE----EECTTTSCCSCSCEEEEEE
T ss_pred CCCcEEEEecCCCCc-ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE----EeecCCCCcCCCeeEEEEE
Confidence 876554332111000 00001134889988888886777887778999998875422 111 12346889988
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCceee----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
.+ ++.+.+. +. +.|.+||..+......... .-....|.++...++|.+.+... +.|..||..+++. . ..
T Consensus 460 d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~-~~ 532 (795)
T 4a2l_A 460 DG-EGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-Q-KA 532 (795)
T ss_dssp CS-SSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-E-EC
T ss_pred CC-CCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-E-Ee
Confidence 87 6665554 44 4588899765322111000 00235689999998888665543 5688888866543 1 00
Q ss_pred cceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC---ccceeceeeecCC
Q 013086 299 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP---NITTISPVNKLHP 375 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~~~~ 375 (449)
........ .......+..+++ |.+.+ |+.. -|..||..+++.. .+... ....+.++ ...+
T Consensus 533 ~~~~~~~l-~~~~i~~i~~d~~---------g~lWi----gT~~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i-~~d~ 595 (795)
T 4a2l_A 533 SILPVSNV-TKLFTNCIYEASN---------GIIWV----GTRE-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGI-LEDS 595 (795)
T ss_dssp CCSCSCGG-GGSCEEEEEECTT---------SCEEE----EESS-CEEEEETTTTEEE-EECGGGTCSCSCEEEE-EECT
T ss_pred cCCCCCCC-CCCeeEEEEECCC---------CCEEE----EeCC-CceeECCCCCcEE-EeCCCCCCchhheEEE-EECC
Confidence 00000000 0111123344443 44333 2333 4888998776543 33211 12345555 6777
Q ss_pred CCcEEeecCCCeEEEEcCCCch
Q 013086 376 RDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 376 ~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
+|++.+++. +-|..|+..+++
T Consensus 596 ~g~lWi~t~-~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 596 FGRLWLSTN-RGISCFNPETEK 616 (795)
T ss_dssp TSCEEEEET-TEEEEEETTTTE
T ss_pred CCCEEEEcC-CceEEEcCCCCc
Confidence 887766664 446667766543
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=0.00012 Score=66.30 Aligned_cols=205 Identities=9% Similarity=0.026 Sum_probs=129.4
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
......++|++.+..++++-...+.|..+++......... .........+++.+.++.++++-...+.|.+.++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 3457889999766577777777889999998876544433 223345678899886355555556678899888875433
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-C-CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-F-GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
...+... ......+++.|.+..|+.+.. . +.|..+++...... . .........+.|+++|..+.++
T Consensus 194 ~~l~~~~---------l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~-~~~~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 194 KVLLWQS---------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--I-IADTHLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EEEECSS---------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSCEEEEEEEGGGTEEE
T ss_pred EEeecCC---------CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--E-EEECCCCCeeeEEEeCCCCEEE
Confidence 2222111 113789999997776666543 3 68888887653321 1 2222233578999998455555
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++-+..+.|..+|+... ....+.. ........|++ ..+.++++-...+.|..++..+|+.
T Consensus 262 ~aD~~~~~I~~~d~dG~-~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 262 WVDAKHHVIERANLDGS-HRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEETTTTEEEEECTTSC-SCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEECCCCEEEEEeCCCC-eeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 66566788999998642 2122211 22345677777 3455556666678899998766654
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.53 E-value=0.00032 Score=63.66 Aligned_cols=208 Identities=12% Similarity=0.015 Sum_probs=129.0
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe---eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
....+..|+|++.+..++.+-...+.|..+++.... ....+..........+++.+.++.++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345788999998665677776677889999987522 12222233445678899988635555565667899999987
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
.......+.... .....+++.|.+..|+.+.. .+.|...++...... . .....-...+.|++++..
T Consensus 190 g~~~~~l~~~~~---------~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~-~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 GVKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDLLS 257 (400)
T ss_dssp TCSEEEEEECSS---------CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--E-EECSSCSCEEEEEEETTT
T ss_pred CCceEEEEeCCC---------CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--E-EEECCCCceEEEEEEeCC
Confidence 655433332111 12789999997777766653 468888888654321 1 222222468899999834
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+.++++-...+.|..+|+..... ..+... ........+++. .+.++++-...+.|..+|..+|+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 44555555677899999864222 222221 122345567763 344555556678899999777764
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00019 Score=71.61 Aligned_cols=296 Identities=6% Similarity=-0.048 Sum_probs=161.1
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe-------------cccCCceeEEEEeeCCCCeEEEEeCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------------NIHSCIVNNIRFNPTNDGTVYAASSD 139 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~l~s~~~d 139 (449)
...|.++...++| . |..|+..+-|.+++..+........ ......|.++...++ + .|..|+.+
T Consensus 257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~-g-~lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF-N-NIWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS-C-CEEEEEBS
T ss_pred CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC-C-CEEEEecC
Confidence 3568999888888 4 5556654568889887654322110 113456888888776 5 46667766
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 219 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 219 (449)
+-|..++..++.....................|.++...+++. |.+|+.++-|..||..+................|.+
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 7788998876554332111000000011123488888877766 556665667888988754321110001112346888
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceee-cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCc
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 298 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (449)
+...+ ++. |..|+.++-|..+|..+.+.. .+.. ......|.++...+++.+.+ |+. +.|..||..+++....
T Consensus 412 i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~-- 484 (781)
T 3v9f_A 412 SLKDS-EGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHH-- 484 (781)
T ss_dssp EEECT-TSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEE--
T ss_pred EEECC-CCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEec--
Confidence 88876 555 445676677999987643221 1100 01345789998888776544 444 5688999877654211
Q ss_pred cceecCCC-CccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC---ccceeceeeecC
Q 013086 299 EIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP---NITTISPVNKLH 374 (449)
Q Consensus 299 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~~~ 374 (449)
...... ........+..+++ |.+.+ |+..+-|..||..+++.. .+... ....+.++ ...
T Consensus 485 --~~~~~~~~~~~~i~~i~~d~~---------g~lWi----gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i-~~d 547 (781)
T 3v9f_A 485 --YDTSNSQLLENFVRSIAQDSE---------GRFWI----GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQI-YRS 547 (781)
T ss_dssp --ECTTTSSCSCSCEEEEEECTT---------CCEEE----EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEE-EEC
T ss_pred --ccCcccccccceeEEEEEcCC---------CCEEE----EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEE-EEC
Confidence 000000 00011123333333 44333 333334778887766543 33221 12345666 567
Q ss_pred CCCcEEeecCCCeEEEEcCCCch
Q 013086 375 PRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 375 ~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
++|.+.++..+|.|..|+..+++
T Consensus 548 ~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 548 SKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp TTSCEEEEETTEEEEESCTTTCC
T ss_pred CCCCEEEEECCCceEEECCCCCc
Confidence 78886666556665888877654
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.51 E-value=0.00021 Score=63.58 Aligned_cols=205 Identities=9% Similarity=0.028 Sum_probs=128.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
......++|++.+..++++-...+.|..+++......... .........+++.+.++.++++-...+.|.+.++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 3457899999766567777777889999998876544433 223345688999886355556656678999999875443
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc-CC-CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF-GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
...+... ......+++.|.+..|+.+. .. +.|..+++....... .........+.|+++|.++.++
T Consensus 151 ~~l~~~~---------l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 151 KVLLWQS---------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp EEEECTT---------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEEEEEETTTTEEE
T ss_pred EEEEeCC---------CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcceEEEeCCCCEEE
Confidence 2222111 11278999999776665554 44 788888886533211 1112233578999998455555
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++-...+.|..+|+... ....+.. ........+++. .+.++++-...+.|..++..+|+.
T Consensus 219 ~aD~~~~~I~~~~~dG~-~~~~~~~-~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 219 WVDAKHHVIERANLDGS-HRKAVIS-QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEETTTTEEEEEETTSC-SCEEEEC-SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEECCCCEEEEEeCCCC-ceEEEEe-CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 66566788999998642 2122211 223456677773 455555555678888888666654
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.49 E-value=2.3e-05 Score=77.64 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=110.2
Q ss_pred cEEEEEEe-CCCCcEEEEEcCCC----cEEEEeCcCC-eeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-----CeEE
Q 013086 75 RVTCLEFH-PTNNHILLSGDKKG----QVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVS 143 (449)
Q Consensus 75 ~V~~~~~~-~~~~~~l~t~~~d~----~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~ 143 (449)
.+...+|| |||..++++.+.+| .|+++|+.++ ..+.... ......+.|+|+ ++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspD-g~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPD-HTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSS-TTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecC-CCEEEEEEECCCCCCCEEE
Confidence 68889999 99954444444333 4999999987 5321111 112457899999 7666665554 3688
Q ss_pred EEeCCCCcee--eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc---CCCeEEEEECCCCCCccceEE-eecCCCce
Q 013086 144 CTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSGEAIL-IHRKGSKV 217 (449)
Q Consensus 144 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v 217 (449)
++++.++... ..+..... .....+.|+||+++|+... ....|+++|+.++........ ........
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~--------~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNP--------LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp EEETTSCGGGCEEEEECCCT--------TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred EEECCCCchhcEEEEecCCC--------ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 8888776532 22221111 1256789999999888765 345788999987531110011 11223345
Q ss_pred EEEEEcCCCCCEEEEEeCC----CeEEEEEccCCCCCCc-eeecCCCC--cEEEEEEcCCCCEEEEeeCCCc--EEEEeC
Q 013086 218 VGLHCNPIQPELLLSCGND----HFARIWDIRRLEAGSS-LCDLPHKR--VVNSAYFSPSGSKILTTSQDNR--LRIWDS 288 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~vwd~ 288 (449)
.++.|+. ++.+++....+ ..|..+++.+...... + +.+.. .+..+.+. .+.++++...++. |.++++
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5666553 44444444433 3677777654211122 2 22333 44555554 2334455566775 455564
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=5.1e-05 Score=69.66 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=97.3
Q ss_pred ceeEEEEee-CCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-C----e
Q 013086 119 IVNNIRFNP-TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G----F 192 (449)
Q Consensus 119 ~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g----~ 192 (449)
....|+++| + ...|+++...+.|+.+|+.++....... . ......++++++++.|+++... + .
T Consensus 138 ~P~~lavdp~~-~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~---------~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKN-HNHLYLVGEQHPTRLIDFEKEYVSTVYS-G---------LSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTE-EEEEEEEEBTEEEEEEETTTTEEEEEEC-C---------CSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCEEEECCCC-CCeEEEEeCCCcEEEEECCCCEEEEEec-C---------CCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 467899997 4 4556666555889999998766544332 1 1238899999999966666542 1 3
Q ss_pred EEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCC
Q 013086 193 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 272 (449)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (449)
+..++.. +...... .... ......++++|.++.++++-..++.|..++....... .+...+.......++|+|+++
T Consensus 207 v~~~~~~-g~~~~~~-~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 207 NYILTRE-SGFKVIT-ELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEEEEGG-GTSCSEE-EEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSSSSCCEEEEECTTSS
T ss_pred EEEEeCC-Cceeeee-eecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCCCCcceeEEEcCCCC
Confidence 4444433 2222111 1111 2246788899855666666667889999998743221 122222334567899999999
Q ss_pred EEEEe-eCCCcEEEEeCC
Q 013086 273 KILTT-SQDNRLRIWDSI 289 (449)
Q Consensus 273 ~l~~~-~~dg~i~vwd~~ 289 (449)
+|+.+ ...+.|..++..
T Consensus 283 ~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCC
Confidence 55544 457789998765
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=0.00044 Score=60.33 Aligned_cols=227 Identities=9% Similarity=-0.014 Sum_probs=126.5
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC--CeEEE
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--GFLYL 195 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i 195 (449)
.....++|+++ +.++++-..++.|..||.... ....+... ..+..+++.++++++++.... ..|..
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~----------~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN-QQIHATVE----------GKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC-EEEEEECS----------SEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc-eEEEEeCC----------CCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 45788999998 777777667899999998753 33333221 138899999999966655432 25777
Q ss_pred EECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCce---------eecCCCCcEEEEE
Q 013086 196 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL---------CDLPHKRVVNSAY 266 (449)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~v~~~~ 266 (449)
+|..+++.. .. ...........++..+ ++..+++-..++.|+.+|...... ... .....-...+.+
T Consensus 100 ~d~~~g~~~-~~-~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 100 LVKSDGTVE-TL-LTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EECTTSCEE-EE-EECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EcCCCCeEE-EE-EeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc-
Confidence 787665532 11 1111222345555555 555555555688999999754210 000 000111234555
Q ss_pred EcCCCCEEEEee-CCCcEEEEeCCC-CCCCCCCccceecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcc
Q 013086 267 FSPSGSKILTTS-QDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 344 (449)
Q Consensus 267 ~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 344 (449)
+|+++.|+++. ..+.|..|++.. +.... .. .... . ..+-.++++++ |++.+ +....+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~-~~-~~~~--~---~~P~gi~vd~d---------G~l~v---a~~~~~~ 234 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE-PE-IFVE--Q---TNIDDFAFDVE---------GNLYG---ATHIYNS 234 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCC-CE-EEEE--S---CCCSSEEEBTT---------CCEEE---ECBTTCC
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc-cE-EEec--c---CCCCCeEECCC---------CCEEE---EeCCCCe
Confidence 78887665554 578999999875 33211 11 1110 0 11224555555 44443 2334577
Q ss_pred eEEEECCCceEEEE--EecCccceeceeeecC---CCCcEEeecC
Q 013086 345 IDFIDITTGQLVAE--VMDPNITTISPVNKLH---PRDDVLASGS 384 (449)
Q Consensus 345 i~iwd~~~~~~~~~--~~~~~~~~v~~v~~~~---~~~~~l~s~s 384 (449)
|.++|.. |+.... +... .....++ +|. |+++.|+.++
T Consensus 235 V~~~~~~-G~~~~~~~~~~~-~~~p~~~-a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAEQG-VIGSTAV-AFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEECTT-CCEEEEECGGGT-CTTEEEE-EECCSTTTTTEEEEEE
T ss_pred EEEECCC-CCEEEEeecccc-cCCceEE-EEecccCCCCEEEEEC
Confidence 9999974 655322 2222 1345556 787 7866555543
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=9.7e-05 Score=65.08 Aligned_cols=198 Identities=12% Similarity=-0.004 Sum_probs=118.8
Q ss_pred ccEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCCeeeEEEe--cc-cCCceeEEEEee-CCCCeEEEEeC----------
Q 013086 74 RRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NI-HSCIVNNIRFNP-TNDGTVYAASS---------- 138 (449)
Q Consensus 74 ~~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~--~~-h~~~v~~~~~~~-~~~~~l~s~~~---------- 138 (449)
.....+++.+ ++ +++++ ...+.|..+|..++....... .+ .......+++.+ + +.++++-..
T Consensus 80 ~~p~gi~~~~~~g-~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYNLQNN-QLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEETTTT-EEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEcCCCC-cEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccce
Confidence 3578999997 66 55544 334558888877543222211 11 123478899999 7 766665432
Q ss_pred -------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE-cCCCeEEEEECCCCCCccceEEe
Q 013086 139 -------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 139 -------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~ 210 (449)
++.|..||..+++........ .....++++++++.|+++ ...+.|..|++...... .....
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~----------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~~ 225 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKEL----------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVL 225 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEE----------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEEE
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCC----------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccceE
Confidence 367888988776543322110 125679999999866665 56689999998754321 11111
Q ss_pred ecCCCceEEEEEcCCCCCEEEEEeC----------CCeEEEEEccCCCCCCceeecC-C-CCcEEEEEEcCCCCEEEEee
Q 013086 211 HRKGSKVVGLHCNPIQPELLLSCGN----------DHFARIWDIRRLEAGSSLCDLP-H-KRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~ 278 (449)
....+ ...+++.+ +++++++... .+.|..+|.. ++....+.... . ...++++++ .++.++++..
T Consensus 226 ~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~ 301 (322)
T 2fp8_A 226 VKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL 301 (322)
T ss_dssp EECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS
T ss_pred EeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeec
Confidence 11223 77899999 8887777654 4668888764 22211221111 1 234666766 3666666666
Q ss_pred CCCcEEEEeCC
Q 013086 279 QDNRLRIWDSI 289 (449)
Q Consensus 279 ~dg~i~vwd~~ 289 (449)
..+.|..+++.
T Consensus 302 ~~~~i~~~~~~ 312 (322)
T 2fp8_A 302 FHGSVGILVYD 312 (322)
T ss_dssp SCSEEEEEEC-
T ss_pred CCCceEEEecc
Confidence 78889999875
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00016 Score=60.53 Aligned_cols=166 Identities=10% Similarity=0.105 Sum_probs=103.3
Q ss_pred cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeE
Q 013086 114 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 193 (449)
Q Consensus 114 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 193 (449)
.+-...+..++|+|+++.++++...++.|...|.. ++.+..+.+... .....+++.+++.++++.-.++.+
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------~D~EGIa~~~~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------KDLETIEYIGDNQFVISDERDYAI 93 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--------SSEEEEEECSTTEEEEEETTTTEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--------CChHHeEEeCCCEEEEEECCCCcE
Confidence 45556799999999844455557778899999998 888877765321 127788898888877777777899
Q ss_pred EEEECCCCCCcc--ceEEe----ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--------CCC
Q 013086 194 YLVDARTNSRSG--EAILI----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--------PHK 259 (449)
Q Consensus 194 ~i~d~~~~~~~~--~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~ 259 (449)
.++++....... ..... .........++|+| .++.|.++.......+|.+........+... ...
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 999887654311 11111 11223468999999 6666666665555555555311010011111 123
Q ss_pred CcEEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 013086 260 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 260 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 289 (449)
..+.+++++| .+++++.......|.++|..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 3567888888 44555555556677777753
No 275
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00021 Score=65.76 Aligned_cols=161 Identities=14% Similarity=0.179 Sum_probs=100.1
Q ss_pred ceeEEEEee-CCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE-------ecCCCEEEEEcCC
Q 013086 119 IVNNIRFNP-TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI-------NPEKGVVLVADNF 190 (449)
Q Consensus 119 ~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~d 190 (449)
....|+|+| +.++++++....+.|++.|+.++........... .......++| ++++..|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~------~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI------PTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS------SCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc------ccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 356899998 4244444444456799999988776655443211 1224889999 9999977776554
Q ss_pred C-------eEEEEECCC-CCCcc----ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEcc-------CCCC--
Q 013086 191 G-------FLYLVDART-NSRSG----EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR-------RLEA-- 249 (449)
Q Consensus 191 g-------~i~i~d~~~-~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-- 249 (449)
+ .|.+++... +.... ..+.... ....++++|.++.++++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 3 366776444 22211 1222111 456788999566677777788899999987 3332
Q ss_pred ---------CCceeecCCCCcEEEEEEcCCCCEEEEe-eCCCcEEEEeC
Q 013086 250 ---------GSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDS 288 (449)
Q Consensus 250 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~ 288 (449)
...+...+.......|+|+|+|++|+.+ +....|+.++.
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 0012222334456789999999965544 45678888665
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=2.1e-05 Score=64.80 Aligned_cols=186 Identities=15% Similarity=0.079 Sum_probs=109.7
Q ss_pred ceeEEEEecCCCEEEEEcCC--CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCC
Q 013086 171 MLYGMDINPEKGVVLVADNF--GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 248 (449)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 248 (449)
....+.|+. +.++.+.+.. +.|+.+|+.+++..... ..... ..-..+++. ++.+.+..-.++.+.+||..+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 377888986 5555665654 49999999998866433 22211 112334443 44556666678999999998866
Q ss_pred CCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCcccc-ceeeeeccCCCCCceE
Q 013086 249 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLA 327 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 327 (449)
....+... ..-..++ +++..|+.+..++.|.++|..+.+...... ......... ...+.|.
T Consensus 97 ~~~ti~~~---~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~----V~~~g~~~~~lNeLe~~--------- 158 (243)
T 3mbr_X 97 PRARFRYP---GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK----VTAGGRPLDNLNELEWV--------- 158 (243)
T ss_dssp EEEEEECS---SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE----CEETTEECCCEEEEEEE---------
T ss_pred EEEEEeCC---CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE----EccCCcccccceeeEEe---------
Confidence 55444432 2223444 467777777778899999998876532111 000000000 0011221
Q ss_pred EEcceecccCCCCCCcceEEEECCCceEEEEEecC------------ccceeceeeecCCCCc-EEeecC
Q 013086 328 VIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------NITTISPVNKLHPRDD-VLASGS 384 (449)
Q Consensus 328 ~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~v~~~~~~~~-~l~s~s 384 (449)
.|+..+ ....+..|.+.|..+|+.+..+... .......+ |++|+++ +++||-
T Consensus 159 -~G~lya---nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGI-A~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLA---NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGI-AFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEE---EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEE-EEETTTTEEEEEET
T ss_pred -CCEEEE---EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEE-EEcCCCCEEEEECC
Confidence 144333 2345678999999999999988733 12345667 8999755 455554
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.38 E-value=0.00056 Score=59.88 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=128.9
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
....+++|++.+..++.+-...+.|..+++...................+++.+.++.++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35778999986557777777788999999887642222212233457789998763555556566789999998754332
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc--CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
...... ......+++.|.+..|+.+. ..+.|..+++...... . .....-...+.|+++|.++.+++
T Consensus 115 ~l~~~~---------~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~-~~~~~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 115 VLFWQE---------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--I-IINSEIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp EEECSS---------CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSCEEEEEEETTTTEEEE
T ss_pred EEEeCC---------CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE--E-EEECCCCCccEEEEeccCCEEEE
Confidence 222111 12378999999877776665 3578888887643221 1 12222235789999984455555
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+-+..+.|..+|+... ....+.. +.......+++. .+.++.+-...+.|..++..+|+.
T Consensus 183 aD~~~~~I~~~d~dG~-~~~~~~~-~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 183 ADAKLNFIHKSNLDGT-NRQAVVK-GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EETTTTEEEEEETTSC-SCEEEEC-SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EECCCCEEEEEcCCCC-ceEEEec-CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 5556788999998642 2222221 233445677775 334555555678899999877765
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=0.00013 Score=72.24 Aligned_cols=159 Identities=10% Similarity=0.004 Sum_probs=93.9
Q ss_pred ceeEEEEe-eCCCCeEEEEe-CCC----eEEEEeCCCC-ceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-
Q 013086 119 IVNNIRFN-PTNDGTVYAAS-SDG----TVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF- 190 (449)
Q Consensus 119 ~v~~~~~~-~~~~~~l~s~~-~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 190 (449)
.+....|+ |+ +++|+.+. .+| .|+++|+.++ +.+... . ......++|+||++.|+....+
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~----------~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V----------SGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E----------EEECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c----------cCceeeEEEecCCCEEEEEEECC
Confidence 67889999 99 77666543 333 5999999988 532110 0 0013568899999888776554
Q ss_pred ----CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCCCCCc-eeec-CCCCc
Q 013086 191 ----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSS-LCDL-PHKRV 261 (449)
Q Consensus 191 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~-~~~~-~~~~~ 261 (449)
..|+++++.+.......+...........+.|+| ++++|+..+. ...|+++|+.+...... .... .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 3688888877543222221112223567889999 8888776653 44788899876421110 1112 23445
Q ss_pred EEEEEEcCCCCEEEEeeCC----CcEEEEeCCC
Q 013086 262 VNSAYFSPSGSKILTTSQD----NRLRIWDSIF 290 (449)
Q Consensus 262 v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~ 290 (449)
..++.|+..+.+++....+ ..|..+++.+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5566655444444444333 2566677654
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0019 Score=58.51 Aligned_cols=180 Identities=10% Similarity=0.076 Sum_probs=109.9
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc----eeeeeecCCCCCCCCCccc
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL----ALSLMNVNPNGWHGPRTWR 170 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~ 170 (449)
...|+..++......... .....+..|+|++..+.++++-...+.|+.+++.... ....+... ..
T Consensus 91 ~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~ 159 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQ 159 (400)
T ss_dssp TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---------CS
T ss_pred cceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------CC
Confidence 468999998876554444 2456789999998734444444557889999887522 11221111 11
Q ss_pred ceeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEccCCC
Q 013086 171 MLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRRLE 248 (449)
Q Consensus 171 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 248 (449)
....+++.+.+. ++++-...+.|.+.++...... . ...........|++.|..+.++++-.. .+.|...++....
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~--~-l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--T-LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE--E-EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceE--E-EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 277899998544 4455566789999998754322 1 222233358899999944444444322 3688888886422
Q ss_pred CCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 249 AGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
. ..+ ....-.....|++++++..|+.+. ..+.|..+|+..
T Consensus 237 ~-~~~-~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 237 I-YSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp C-EEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred c-EEE-EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 1 112 112335678999999777776664 467899999864
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.30 E-value=0.00099 Score=65.68 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=126.3
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCe---eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 148 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 148 (449)
....+..|+|++.+.+++++-...+.|+.+++.... ....+..........|++.+.+++++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345678999998655677777777889999987531 12222233445678899998734555555667899999987
Q ss_pred CCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 149 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
.......+.... .....|++.|....|+.+.. .+.|...++...... ......-.....|++.+..
T Consensus 502 G~~~~~l~~~~l---------~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~---~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 502 GVKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SSSEEEEEECTT---------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSSCSCEEEEEEETTT
T ss_pred CCeEEEEEeCCC---------CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE---EEEeCCCCCceEEEEecCC
Confidence 554333332111 12789999998776766653 368888888654321 1222233468899999845
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 227 PELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 227 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+.++++-...+.|..+++..... ..+... ..-.....|++.. +.++++-...+.|...|..+|+.
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred CeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcc
Confidence 55555555567899999864322 222211 1222345666642 33444444567888888777754
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.002 Score=56.42 Aligned_cols=180 Identities=10% Similarity=0.063 Sum_probs=108.8
Q ss_pred CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC---ceeeeeecCCCCCCCCCcccce
Q 013086 96 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRML 172 (449)
Q Consensus 96 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~i 172 (449)
..|+..|+.+........ ....+..++|++.++.++++-...+.|..+++... .....+. . .. ....
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~-~~------~~~p 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S-RD------IQAP 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-C-SS------CSCC
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-e-CC------CCCc
Confidence 569999998766544442 45567899999873445555555789999998761 2212111 1 00 0126
Q ss_pred eEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-CeEEEEEccCCCCC
Q 013086 173 YGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLEAG 250 (449)
Q Consensus 173 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 250 (449)
..+++.+.+..| ++-...+.|.++++...... . ...........+++.|..+.++++.... +.|..+++... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~ 155 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-T--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DI 155 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-E--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-E--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-Ce
Confidence 788898755545 45567789999998753321 1 1222334688999998444444444333 68888887531 11
Q ss_pred CceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 251 SSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
..+. ...-.....++++|++..|+.+. ..+.|..+|+..
T Consensus 156 ~~~~-~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 156 YSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE-ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 1111 12334578999999777666554 467899999863
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.00036 Score=64.03 Aligned_cols=198 Identities=11% Similarity=0.126 Sum_probs=114.9
Q ss_pred cEEEEEEeCC--CCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC---C-eEEEEeCC
Q 013086 75 RVTCLEFHPT--NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---G-TVSCTDLE 148 (449)
Q Consensus 75 ~V~~~~~~~~--~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g-~v~iwd~~ 148 (449)
.-..|+|+|+ +..++++ ...+.|+.++..++...... ........++|+++ ++++++-... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECC
Confidence 3568999985 3254444 33388999999776655443 24556899999999 7744443311 1 23333332
Q ss_pred CCcee-eeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 149 TGLAL-SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
.+... ..+. .......+++++ ++.++++-..++.|+.+|..++.....+.. .........++++| +
T Consensus 216 ~~~~~~~~~~----------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~~~~~~~~~ia~dp-d 283 (433)
T 4hw6_A 216 SGFTERLSLC----------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-MDTKGSNFHIVWHP-T 283 (433)
T ss_dssp GTTCCEEEEE----------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-CSCCSSCEEEEECT-T
T ss_pred CCeecccccc----------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-cCCCCCcccEEEeC-C
Confidence 22110 1111 011266788999 566665666778999999886554222211 11222345799999 8
Q ss_pred CC-EEEEEeCCCeEEEEEccC--CCCCC--ceee-cC------------CCCcEEEEEE---------cCCCCEEEEeeC
Q 013086 227 PE-LLLSCGNDHFARIWDIRR--LEAGS--SLCD-LP------------HKRVVNSAYF---------SPSGSKILTTSQ 279 (449)
Q Consensus 227 ~~-~l~~~~~dg~i~iwd~~~--~~~~~--~~~~-~~------------~~~~v~~~~~---------~~~~~~l~~~~~ 279 (449)
++ ++++-...+.|+.++... ..... .+.- .+ .-.....+++ .+++.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 87 555555678899988652 11110 1110 00 1123567898 677777776667
Q ss_pred CCcEEEEeC
Q 013086 280 DNRLRIWDS 288 (449)
Q Consensus 280 dg~i~vwd~ 288 (449)
.+.|+.++.
T Consensus 364 n~~I~~~~~ 372 (433)
T 4hw6_A 364 SHTVRVLTP 372 (433)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 788999885
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.0053 Score=61.25 Aligned_cols=298 Identities=9% Similarity=-0.045 Sum_probs=158.3
Q ss_pred ccEEEEEEeC--CCCcEEEEEcCCCcEEEEeCcCCeeeEEEec----ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 74 RRVTCLEFHP--TNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 74 ~~V~~~~~~~--~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
..|.++.... +| . |..++.++.|..||..+......... .....|.++...++ + .|..++.++-|..||.
T Consensus 115 ~~i~~i~~d~~~~g-~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~ 190 (781)
T 3v9f_A 115 NDVTHITSSVQAGK-G-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAED-G-KLYIGHVEGGLSILSL 190 (781)
T ss_dssp SCEEEEEECSSTTS-E-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEET-T-EEEEEETTTEEEEEET
T ss_pred CcceEEEecCccCC-C-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCC-C-CEEEEecCCCeEEEcC
Confidence 3688988887 77 4 44455345588899876554332110 12345788887775 4 4555666656889998
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe----ecCCCceEEEEEc
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI----HRKGSKVVGLHCN 223 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~ 223 (449)
.+++........... .......|.++...+++.+.+. +.+ -+.+||..+.......... ......|.++...
T Consensus 191 ~~~~~~~~~~~~~~~--~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 266 (781)
T 3v9f_A 191 NDKSVKHFVHDPQNP--NSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL 266 (781)
T ss_dssp TTTEEEEECC----------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC
T ss_pred CCCceEeeecCCCCc--ccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC
Confidence 876543321111000 0001123888888887775554 444 6889998765422111000 1123468898887
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCcee-------ec-----CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLC-------DL-----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+ ++. |..|+..+-|.++|..+........ .. -....|.++...++|. |..|+.++-|..|+..++
T Consensus 267 ~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 267 K-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp T-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred C-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence 6 554 5556665678889986543221111 00 1345789999988886 555676777889988655
Q ss_pred CCCCCCccce--ecCCCCccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEe--cCcccee
Q 013086 292 NLDSPSREIV--HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--DPNITTI 367 (449)
Q Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v 367 (449)
.......... ...... ......+...++ |.+.+ |+.++-|..||..++....... ......+
T Consensus 344 ~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~---------g~lWi----gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 344 TFHTWSYSPTQMNESSLS-NKVVSSVCDDGQ---------GKLWI----GTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEC----CCCSSCCS-SSCEEEEEECTT---------SCEEE----EEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred cceeeccCccccccCCCC-CcceEEEEEcCC---------CCEEE----EeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 4311000000 000000 011112222332 33333 4445568888887654332111 1122456
Q ss_pred ceeeecCCCCcEEeecCCCeEEEEcCCCch
Q 013086 368 SPVNKLHPRDDVLASGSSRSIFIWRPKEKS 397 (449)
Q Consensus 368 ~~v~~~~~~~~~l~s~sdg~i~iw~~~~~~ 397 (449)
.++ ...++|.+.+...++-|..++..+++
T Consensus 410 ~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 410 LCS-LKDSEGNLWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp EEE-EECTTSCEEEEETTEEEEEECSSSCE
T ss_pred EEE-EECCCCCEEEEeccCCEEEEcCCCCc
Confidence 666 55667776664336778888887664
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.19 E-value=0.0026 Score=55.65 Aligned_cols=181 Identities=7% Similarity=-0.059 Sum_probs=108.9
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee-eeecCCCCCCCCCccccee
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 173 (449)
...|+..++................+.+++|++..+.++.+-...+.|..+++..+.... .+.... ....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---------~~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------LSPD 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC---------SCCC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC---------CCcc
Confidence 467999999875311111111234577899998734455555567889999987663211 111110 1266
Q ss_pred EEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe--CCCeEEEEEccCCCCC
Q 013086 174 GMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG--NDHFARIWDIRRLEAG 250 (449)
Q Consensus 174 ~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~ 250 (449)
.+++.+.+..| ++-...+.|.++++...... . ...........+++.| .+..|.... ..+.|...++... ..
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~-l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~-~~ 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRK--V-LFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGS-SR 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E-EECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSC-SC
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEE--E-EEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-Ce
Confidence 88898755544 55556789999998754321 1 2223334688999998 544444444 3578888887532 21
Q ss_pred CceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 251 SSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
..+. ...-...+.|+++|++..|+.+. ..+.|..+|+..
T Consensus 158 ~~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 158 FIII-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE-ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 1221 12234568999999766666554 467899999863
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.19 E-value=0.0023 Score=55.67 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=118.4
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC---CCC---eEEEEeC---CCeEEEEeCC--CCceeee
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT---NDG---TVYAASS---DGTVSCTDLE--TGLALSL 155 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~---~l~s~~~---dg~v~iwd~~--~~~~~~~ 155 (449)
.+++.....+-+.+||+ .++.+..+. .+.++.+..-|. ++. ++++... +++|.+|++. ++. +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 35665667788999999 666666652 256777777764 011 2333333 5799999773 433 333
Q ss_pred eecCCCCCCCCCcccceeEEEE--ecC-CC-EEEEEcCCCeEEEEECCC---CCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDI--NPE-KG-VVLVADNFGFLYLVDART---NSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
+.....+.. .....+..+++ ++. +. ++++...+|.+..|++.. +....+........+.+-.+.+.+ ...
T Consensus 116 i~~~~~pv~--t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g 192 (355)
T 3amr_A 116 MTDPDHPIA--TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYG 192 (355)
T ss_dssp CSCTTSCEE--CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTT
T ss_pred ccccccCcC--CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCC
Confidence 311000000 00123677777 664 43 688888999999998843 323333333444455788889988 778
Q ss_pred EEEEEeCCCeEEEEEccCCC--CCCceeecC---CCCcEEEEEEc--CCCC-EEEEee-CCCcEEEEeCC
Q 013086 229 LLLSCGNDHFARIWDIRRLE--AGSSLCDLP---HKRVVNSAYFS--PSGS-KILTTS-QDNRLRIWDSI 289 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~vwd~~ 289 (449)
.|+.+-.+..|..|+.+... ....+...+ ....+..|++- ++++ +|++++ .++.+.+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 88888888777777754221 222333332 22468888884 4555 666665 57799999985
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.00084 Score=61.57 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=95.4
Q ss_pred cEEEEEEeC-CCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC-CC----eEEEEeCC
Q 013086 75 RVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DG----TVSCTDLE 148 (449)
Q Consensus 75 ~V~~~~~~~-~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg----~v~iwd~~ 148 (449)
.-..|+++| ++..+++ +...+.|+.+|+.+........ .......|+|+++ ++.|+++.. ++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv-~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~-G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYL-VGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHE-ADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEE-EEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTT-SSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEE-EeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCC-CCEEEEEeCCCCcccceEEEEeC-
Confidence 456889997 3424444 4444789999998766544432 4556889999998 775666554 22 2333443
Q ss_pred CCcee--eeeecCCCCCCCCCcccceeEEEEec-CCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCC
Q 013086 149 TGLAL--SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 149 ~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (449)
.+... ..+.. ......++++| ++.++++-..++.|..++....... .. ...........++|+|
T Consensus 213 ~g~~~~~~~l~~----------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~-~~~~~~~~P~gia~~p- 279 (430)
T 3tc9_A 213 ESGFKVITELTK----------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PL-FTIQDSGWEFHIQFHP- 279 (430)
T ss_dssp GGTSCSEEEEEE----------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EE-EECSSSSCCEEEEECT-
T ss_pred CCceeeeeeecc----------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-EEcCCCCcceeEEEcC-
Confidence 33222 11111 11267888999 6666666667889999998764421 11 1111223578999999
Q ss_pred CCC-EEEEEeCCCeEEEEEcc
Q 013086 226 QPE-LLLSCGNDHFARIWDIR 245 (449)
Q Consensus 226 ~~~-~l~~~~~dg~i~iwd~~ 245 (449)
+++ ++++-...+.|..++..
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEeCC
Confidence 888 55555667889998865
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.11 E-value=0.00087 Score=57.79 Aligned_cols=209 Identities=9% Similarity=-0.017 Sum_probs=124.6
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc----c--CCceeEEEE---eeCCCCeEEEEe---------
Q 013086 76 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI----H--SCIVNNIRF---NPTNDGTVYAAS--------- 137 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~----h--~~~v~~~~~---~~~~~~~l~s~~--------- 137 (449)
-.+++|.+...+++++.-..+.|..|+...+........+ . ...+..|.| .|+ +.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccc
Confidence 3468898866466666668999999999755433332221 0 114688999 577 77776543
Q ss_pred ----CCCeEEEEeCC---CCceeeeeecCCCCCC----CCCcccceeEEEEecCCCEEEEEcCC-CeEEEEECCCCCCcc
Q 013086 138 ----SDGTVSCTDLE---TGLALSLMNVNPNGWH----GPRTWRMLYGMDINPEKGVVLVADNF-GFLYLVDARTNSRSG 205 (449)
Q Consensus 138 ----~dg~v~iwd~~---~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~ 205 (449)
.+..|..+|+. +++.+....+...... ..........++..++|+..++++.. +.|..++.......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~- 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS- 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence 26789999999 7877766553210000 00011237899999999999988877 88877776643211
Q ss_pred ceEEee---cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--C---CCCcEEEE-EEcCCCCEEEE
Q 013086 206 EAILIH---RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--P---HKRVVNSA-YFSPSGSKILT 276 (449)
Q Consensus 206 ~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~~~v~~~-~~~~~~~~l~~ 276 (449)
...... ....-.+.|+++| +++.|++....|.|..+|++..... .+... + .-.....| ..-.+|+.|++
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred eeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEEE
Confidence 111111 0111366999999 8888888877999999999842210 12211 1 11123333 22237777444
Q ss_pred e-eCCCcEEEEeC
Q 013086 277 T-SQDNRLRIWDS 288 (449)
Q Consensus 277 ~-~~dg~i~vwd~ 288 (449)
+ ...+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 251 GARAPYAISFRSW 263 (334)
T ss_dssp EEETTEEEEEECS
T ss_pred EcCCCCEEEEECC
Confidence 4 44555555554
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.0023 Score=58.93 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=118.6
Q ss_pred cEEEEEEeCC-CCcEEEEEcCCCcEEEEeCcCCeeeEEEecc--cCCceeEEEE-------eeCCCCeEEEEeCCC----
Q 013086 75 RVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRF-------NPTNDGTVYAASSDG---- 140 (449)
Q Consensus 75 ~V~~~~~~~~-~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~-------~~~~~~~l~s~~~dg---- 140 (449)
.-..|+|+|. +.+++++-...+.|++.|+.+.........+ .......|+| +++ ++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~-G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE-AEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT-TCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC-CCEEEEEeCCCCCcc
Confidence 4678999983 4356666555577999998887665554322 1235899999 998 77666665543
Q ss_pred ---eEEEEeCCC-Ccee-----eeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCeEEEEECC-------CCCC
Q 013086 141 ---TVSCTDLET-GLAL-----SLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDAR-------TNSR 203 (449)
Q Consensus 141 ---~v~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~-------~~~~ 203 (449)
.|.+.+... +... ..+. .......++++|++ .++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred cCceEEEEecCCCCceeecccceeec----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 2221 1111 01125678899954 555566678899999997 4443
Q ss_pred -----------ccceEEeecCCCceEEEEEcCCCCCE-EEEEeCCCeEEEEEccCCC--CC--Cceeec-C---C-----
Q 013086 204 -----------SGEAILIHRKGSKVVGLHCNPIQPEL-LLSCGNDHFARIWDIRRLE--AG--SSLCDL-P---H----- 258 (449)
Q Consensus 204 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~--~~--~~~~~~-~---~----- 258 (449)
...+ ...........++|+| +++. +++-+..+.|+.++..... .. ..+.-. + .
T Consensus 289 ~tp~~~~~~g~~~~l-~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~ 366 (496)
T 3kya_A 289 WDPIVKNNPNTFKQL-FTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG 366 (496)
T ss_dssp CCCBGGGCTTTEEEE-EECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred eccccccccccccee-EecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence 0011 1122233578999999 8884 5555567889886654211 00 011100 1 0
Q ss_pred ----CCcEE-EEEEc-------CCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 259 ----KRVVN-SAYFS-------PSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 259 ----~~~v~-~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
-.... .+... +++.++++-.....|+.++ .+|.
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 01233 45554 4566666666778899998 3443
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.011 Score=58.48 Aligned_cols=180 Identities=10% Similarity=0.074 Sum_probs=109.2
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCc----eeeeeecCCCCCCCCCccc
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL----ALSLMNVNPNGWHGPRTWR 170 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~ 170 (449)
...|+..++.......... ....+..|+|++..+.++++-...+.|+.+++.... ....+... ..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~---------l~ 471 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQ 471 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---------CS
T ss_pred ccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC---------CC
Confidence 4568888887655444432 456678999998634455555557889999887532 11222111 11
Q ss_pred ceeEEEEecCCCEEEE-EcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-CeEEEEEccCCC
Q 013086 171 MLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLE 248 (449)
Q Consensus 171 ~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~ 248 (449)
....|++.+.++.|+. -...+.|.+.++...... . ...........|++.|..+.++++-... +.|...++....
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~--~-l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--T-LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE--E-EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE--E-EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 2678999987755554 456789999998754321 1 2222333688999999445555554333 678888886322
Q ss_pred CCCceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 013086 249 AGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 290 (449)
. ..+ ....-.....|++++.+..|+.+. ..+.|..+++..
T Consensus 549 ~-~~l-v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 549 I-YSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp E-EEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred e-EEE-EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 1 111 112335688999998766666654 456899999854
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.07 E-value=2.5e-05 Score=76.40 Aligned_cols=205 Identities=13% Similarity=0.028 Sum_probs=119.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcC----CeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
..+..|+|++.+..++++-...+.|+.+++.+ ......+ .........|++.+.++.++++-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 34668899987655666655678899999875 2221111 112234567888865355555555678899999876
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
......+.... .....+++.|.+..|+.+.. .+.|..+++...... . .........+.|+|+|..+
T Consensus 485 ~~~~~l~~~~~---------~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~-l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 485 VKRKTLFREQG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp CCEEEECCCSS---------CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--E-ESCSSCSSCCCEEECTTTC
T ss_pred CceEEEEeCCC---------CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--E-EEeCCCCCccEEEEeccCC
Confidence 54333322111 12677889987666665543 267888777543221 1 1112223577899998456
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 228 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.++++-+..+.|..+++... ....+... ........|++..+ .++++....+.|..++..+|+.
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 66677667789999998642 22222111 11223345566543 4455555678899999877654
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.01 E-value=0.012 Score=56.55 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=114.3
Q ss_pred CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCccccee
Q 013086 94 KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 173 (449)
Q Consensus 94 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (449)
....|+..++.+......+....-..+..|+|++..+.++++-..++.|..+++........+.... ....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---------~~P~ 83 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL---------DYPE 83 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC---------CCcc
Confidence 4568999999875543333222345688999999834445555567899999987654333332111 1267
Q ss_pred EEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEccCCCCCC
Q 013086 174 GMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGS 251 (449)
Q Consensus 174 ~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 251 (449)
.+++.+.+..| ++-...+.|.+.++...... . ...........|++.|..+.++++- +..+.|...++..... .
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~--~-l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~ 159 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ--V-LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T 159 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCE--E-EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEE--E-EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E
Confidence 88898766655 44456789999998754321 1 2223334678999999445444443 2256788888764222 2
Q ss_pred ceeecCCCCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCC
Q 013086 252 SLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFG 291 (449)
Q Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~ 291 (449)
.+ ...-.....|++++++..|+.+. ..+.|..+|+...
T Consensus 160 ~l--~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 160 TL--VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EE--ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 22 12445678999999777666654 4678999998643
No 292
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.01 E-value=8e-05 Score=72.64 Aligned_cols=209 Identities=10% Similarity=-0.019 Sum_probs=113.0
Q ss_pred EEEEEEeCCCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCC-ceeEEEEeeCCCCeEEEEe-CC-----CeEEEEeC
Q 013086 76 VTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTVYAAS-SD-----GTVSCTDL 147 (449)
Q Consensus 76 V~~~~~~~~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~-~d-----g~v~iwd~ 147 (449)
..++++..++ ++++.|+. +..+.+||..+..-.... ..+.. .-.+++..++ +++++.|+ .+ ..+.+||.
T Consensus 245 ~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 245 CPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEET
T ss_pred cccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCC
Confidence 3456777888 68888874 568999999876533322 11222 2234555566 88888888 34 56999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC---------CeEEEEECCCCCCccceEEeec------
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------GFLYLVDARTNSRSGEAILIHR------ 212 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~------ 212 (449)
.++.....-.....+...... ...+..++..++.++.+ ..+..||..+............
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~-----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADK-----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCT-----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred CCCcceeCCCccccccccccc-----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 887654321000000000000 01122344555555444 4567888877653211111110
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCC-----------eEEEEEccCCCCCCce-eecCCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 213 KGSKVVGLHCNPIQPELLLSCGNDH-----------FARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
....-.++.+...++.+++.|+.++ .|.+||..+..-.... ........-.++...|++++++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 0112344444433778888887543 6778887653221111 011222223445677899999999864
Q ss_pred -----------CcEEEEeCCCCC
Q 013086 281 -----------NRLRIWDSIFGN 292 (449)
Q Consensus 281 -----------g~i~vwd~~~~~ 292 (449)
..+.+||..+++
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cCcCcCCCCcccceEEEcCCCCc
Confidence 468899987654
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.00 E-value=0.012 Score=56.70 Aligned_cols=202 Identities=9% Similarity=0.036 Sum_probs=128.9
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
.....|+|++.+..++.+-..++.|..+++.......... ........|++.+.+++++++-...+.|.+.++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 4578999999776777777778999999987654444332 223457889998773445555556788999998754432
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
..+... ......+++.|....|+.+.. .+.|...++...... . ..........|++++..+.+++
T Consensus 116 ~l~~~~---------l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~--~--l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 116 VLVWKD---------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT--T--LVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EEECSS---------CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E--EECSCSSEEEEEEETTTTEEEE
T ss_pred EEEeCC---------CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE--E--EECCCCCcceEEEccccCEEEE
Confidence 222111 122789999997766766653 568888887654422 1 1123347889999983444555
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+-...+.|..+|+..... ..+. ........+++.. +.++++-...+.|...|..+|+.
T Consensus 183 aD~~~~~I~~~d~dG~~~-~v~~--~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNR-EVIA--DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EETTTTEEEEEETTSCSC-EEEE--ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EECCCCEEEEEcCCCCce-EEee--ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 555678899999865332 2222 1223455777764 44444444578899999777653
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.93 E-value=0.00014 Score=71.02 Aligned_cols=231 Identities=13% Similarity=0.118 Sum_probs=124.3
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE-eCCCeEEEEeCCCC----ceeeeeecCCCCCCCCCcc
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-SSDGTVSCTDLETG----LALSLMNVNPNGWHGPRTW 169 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~ 169 (449)
.+.|++.++.+......+. ....+..|+|++. ...|+.+ ...+.|+.+++... .....+.. ..
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~-~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------DI 452 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CCTTCCCCEEETT-TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------CC
T ss_pred ccceEEEeCCCCcceeeec--cCcceEEEccccc-cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------CC
Confidence 4578888887655433331 3345778999987 5555554 44678999988751 11111100 01
Q ss_pred cceeEEEEecCCCEE-EEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-CeEEEEEccCC
Q 013086 170 RMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HFARIWDIRRL 247 (449)
Q Consensus 170 ~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~ 247 (449)
.....+++.+.+..| ++-...+.|.++++...... ............|++.|..+.++++-... +.|..+++...
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE---EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE---EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 125678888655444 44456788999998754321 11222223567889998445555544333 67888777532
Q ss_pred CCCCceeecCCCCcEEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccCCCCCce
Q 013086 248 EAGSSLCDLPHKRVVNSAYFSPSGSKIL-TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL 326 (449)
Q Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
.. ..+. ...-...+.|+|+|++..|+ +-+..+.|.++++..... ..+.... .....++.++
T Consensus 530 ~~-~~l~-~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~----~~~~~~~--~~~~~P~gla---------- 591 (699)
T 1n7d_A 530 DI-YSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDE--KRLAHPFSLA---------- 591 (699)
T ss_dssp CC-CEES-CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC----EEECCCS--SSCSSCCCCE----------
T ss_pred Ce-eEEE-eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce----EEEEecC--CcCCCceEeE----------
Confidence 21 1221 11223457899999755554 445567899999863221 1111000 0001111222
Q ss_pred EEEcceecccCCCCCCcceEEEECCCceEEEEEec
Q 013086 327 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 361 (449)
Q Consensus 327 ~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 361 (449)
+.+..+.. +....+.|..++..+|+.+..+..
T Consensus 592 -vd~~~lyw--td~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 592 -VFEDKVFW--TDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -EETTEEEE--ECSTTTCEEEEETTTEEEEECCCT
T ss_pred -EECCEEEE--EeCCCCeEEEEEccCCCceEEeec
Confidence 22222210 235567899999988988877754
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.00057 Score=58.91 Aligned_cols=168 Identities=9% Similarity=0.078 Sum_probs=108.6
Q ss_pred cCCceeEEEEeeCCCCeEEEEe-CCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEE---ecCCCEEEEEc---
Q 013086 116 HSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI---NPEKGVVLVAD--- 188 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~--- 188 (449)
...-..++.|++. ...|+.++ ..++|..||...+..... ...... ........+..+.| .++++++++..
T Consensus 11 ~~~yPE~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 11 KNLTPEDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TTCCCSCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC-CSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cccCCcCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc-ccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 4445678899987 55555555 699999999976544333 222100 00111123688999 68877777544
Q ss_pred ----------CCCeEEEEECC---CCCCccceEEee----c-------CCCceEEEEEcCCCCCEEEEEeCC-CeEEEEE
Q 013086 189 ----------NFGFLYLVDAR---TNSRSGEAILIH----R-------KGSKVVGLHCNPIQPELLLSCGND-HFARIWD 243 (449)
Q Consensus 189 ----------~dg~i~i~d~~---~~~~~~~~~~~~----~-------~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd 243 (449)
.+..|..||+. +++..... ... . .......++..+ +++..++++.. +.|...+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe
Confidence 26789999999 66654322 111 0 112488999999 99999998888 8877777
Q ss_pred ccCCCCCCceee-c---CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 244 IRRLEAGSSLCD-L---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 244 ~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
...... ..+.. . ......+.|+++|+|..|++....|.|..+|+.
T Consensus 166 pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 166 ADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 653211 11110 0 112236789999999999888779999999987
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.88 E-value=0.0093 Score=51.02 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=150.3
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeE
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 174 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (449)
+.+|.|.|+.+...+..... ..-+...+|. .+.++.-. ..++.++|+++...+......+. |.-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi----~AdsAIMnP~-~~ViALra-g~~LQiFnletK~klks~~~~e~----------Vvf 111 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 111 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEECSSC----------EEE
T ss_pred CCEEEEEECCCCCCcccccc----ccceeeeCCC-ccEEEEec-CCeEEEechHHhhhhcceecCCc----------cEE
Confidence 34789999988666544321 2234556887 77666665 78999999999999988877543 666
Q ss_pred EEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec--CCCceEEEEEcCCCCCEEEEEeC-------CCeEEEEEcc
Q 013086 175 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCGN-------DHFARIWDIR 245 (449)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~ 245 (449)
-.|-.+..+-++.. ..|+.|++.....+.+.+..+. ....|.....++ +.++++..+- .|.+.+|...
T Consensus 112 WkWis~~~L~lVT~--taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 112 WKWISLNTVALVTD--NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp EEECSSSEEEEEES--SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEecCCCeEEEEcC--CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeec
Confidence 66766554444433 5899999987554433333322 234677788888 7776655442 4788999986
Q ss_pred CCCCCCceeecCCCCcEEEEEEcC--C-CCEEEEeeC---CCcEEEEeCCCC-CCCCCCccceecCCCCccccceeeeec
Q 013086 246 RLEAGSSLCDLPHKRVVNSAYFSP--S-GSKILTTSQ---DNRLRIWDSIFG-NLDSPSREIVHSHDFNRHLTPFRAEWD 318 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (449)
... .-...+|.+.-..+.+.- . ..+++.+.. .+.++|-++... .-..+ +... ...+.|.
T Consensus 189 r~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~---------f~kk--~vdi~fp 254 (365)
T 2xzh_A 189 RKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP---------FPKK--AVDVFFP 254 (365)
T ss_dssp TTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC---------CCCE--EEEECCC
T ss_pred ccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC---------cccc--cceeeCC
Confidence 321 111225554333332221 1 123333332 258999988432 11111 1110 1123333
Q ss_pred cCC---CCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 319 PKD---PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 319 ~~~---~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
|+. ....+.++.+|-. .|.-+.-|.|++||+++|.++..-+-.....+... .....+.+++..-.|.|.--.++.
T Consensus 255 pea~~DFPVamqvs~kygv-iyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta-~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TTCTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EEGGGTEEEEEETTCEEEEEEECT
T ss_pred ccccCCceEEEEecccCCE-EEEEeCCcEEEEEEcccCcEEEEeccCCCceEEec-ccCCCCcEEEEcCCCEEEEEEECc
Confidence 321 1112222222111 11235568899999999999987765542333322 233334444444477777766666
Q ss_pred chhhh
Q 013086 396 KSELV 400 (449)
Q Consensus 396 ~~~~~ 400 (449)
...+-
T Consensus 333 ~~ivp 337 (365)
T 2xzh_A 333 ENIIP 337 (365)
T ss_dssp TTHHH
T ss_pred ccEeh
Confidence 55443
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.88 E-value=0.0065 Score=58.40 Aligned_cols=206 Identities=10% Similarity=0.027 Sum_probs=122.2
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
-.....|+|++.+..++.+-...+.|..+++...................|++.+.+++++++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34578999998765666666667889999987653322222223356889999987355555556678999999876543
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 230 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (449)
...+... ......+++.|.+..|+.+.. .+.|...++...... . .........+.|++++..+.++
T Consensus 119 ~~l~~~~---------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~--~-l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 119 KVLFWQE---------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--I-IINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp EEEECSS---------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSSEEEEEEETTTTEEE
T ss_pred EEEEeCC---------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE--E-EEeCCCCCCcEEEEEccCCEEE
Confidence 2222111 112678999998776666653 467777777643221 1 1222334688999998445555
Q ss_pred EEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 231 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 231 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
++-...+.|..+|+.......... +.......|++..+ .++++-...+.|...|..+|+.
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEeCCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 555566789988886432222211 11122345677554 3444444577899999887754
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.75 E-value=0.056 Score=55.86 Aligned_cols=190 Identities=12% Similarity=0.035 Sum_probs=101.3
Q ss_pred CccEEEEEEeCCC-----CcEEEEEcC-CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeEEEE
Q 013086 73 SRRVTCLEFHPTN-----NHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCT 145 (449)
Q Consensus 73 ~~~V~~~~~~~~~-----~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iw 145 (449)
...|.|+++.+.. ..+++.|.. |++|+|+++.+.+......-+......++.+..- +..+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999998642 258888886 9999999998765554432222234555554432 14578899999998666
Q ss_pred eCC--CCceeee--eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEE-E
Q 013086 146 DLE--TGLALSL--MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG-L 220 (449)
Q Consensus 146 d~~--~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~ 220 (449)
.+. +|..... ...... ++.-..+...+..-+.+..+....++.-.. . +....-....+.. .
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~---------pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~----l~~s~l~~~~v~~~~ 698 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQ---------PTVLRTFRSLSTTNVFACSDRPTVIYSSNH-K----LVFSNVNLKEVNYMC 698 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSS---------CCEEEEEESSSCEEEEEESSSCEEEEESSS-S----EEEEEBSSSCCCEEE
T ss_pred EEcCCCCccccceeEEcCCC---------ceEEEEEeeCCceeEEEECCCCEEEEEcCC-c----eEEeccChHHhceEe
Confidence 543 4544322 111111 133333333344333333344444443321 1 1111111112322 3
Q ss_pred EEcCC-CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEee
Q 013086 221 HCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 278 (449)
Q Consensus 221 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 278 (449)
.|+.. ..+-++..+ ++.++|..+..... .......-...+..++++|..+.++++.
T Consensus 699 ~F~se~~~~g~v~~~-~~~LrI~~i~~~~~-~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 699 PLNSDGYPDSLALAN-NSTLTIGTIDEIQK-LHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp EECCSSSTTEEEEEC-SSCEEEEEECCSSS-EEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccCcccCCCcEEEEc-CCceEEEEecccCC-eeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 34331 134455444 45699988865422 2333334567889999999877765554
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.74 E-value=0.018 Score=50.17 Aligned_cols=205 Identities=9% Similarity=0.154 Sum_probs=117.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC----CC---EEEEEcC---CCeEEEEECC
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE----KG---VVLVADN---FGFLYLVDAR 199 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~ 199 (449)
..+++.....+-|.+||+ +|+.+..+.. . .+..+.+-|+ ++ ++++... ++.|.+|++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g---------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--G---------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--S---------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--C---------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 456666677889999999 7888877642 1 1566666553 22 3344443 5789999773
Q ss_pred --CCCCccceEE----eecCCCceEEEEE--cCCCCC-EEEEEeCCCeEEEEEccCCC----CCCceeecCCCCcEEEEE
Q 013086 200 --TNSRSGEAIL----IHRKGSKVVGLHC--NPIQPE-LLLSCGNDHFARIWDIRRLE----AGSSLCDLPHKRVVNSAY 266 (449)
Q Consensus 200 --~~~~~~~~~~----~~~~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~ 266 (449)
+.. +..... .......+..+++ +|..+. ++++...+|.+..|++.... ..+.+..+...+.+..+.
T Consensus 108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcv 186 (355)
T 3amr_A 108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMA 186 (355)
T ss_dssp TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEE
T ss_pred CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEE
Confidence 322 111100 0011135666777 663443 67778888999999985421 223344455567889999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceec---CCCCccccceeeeeccCCCCCceEEEcc-eecccCCCCCC
Q 013086 267 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS---HDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAAL 342 (449)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~d 342 (449)
..+....|+.+-++..|..++.+...-. ....+.. ..+......+.+...++ |+ |+.. +.-.+
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~--~~~~v~~~~~g~l~aDvEGLai~~~~~---------g~gyLiv--SsQG~ 253 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGS--NGTVIDRADGRHLTRDIEGLTIYYAAD---------GKGYLMA--SSQGN 253 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCS--CCEEEEEBSSSSBCSCEEEEEEEECGG---------GCEEEEE--EEGGG
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCC--CceEEEEecCCccccCcceEEEEecCC---------CCEEEEE--EcCCC
Confidence 9998889999999877766665422110 0111111 11111122122222332 22 3331 33356
Q ss_pred cceEEEECC-CceEEEEEe
Q 013086 343 HPIDFIDIT-TGQLVAEVM 360 (449)
Q Consensus 343 ~~i~iwd~~-~~~~~~~~~ 360 (449)
++..+||.. +.+.+..+.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 789999996 777787775
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.69 E-value=0.019 Score=50.41 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=103.3
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEE-EeCCCCce
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC-TDLETGLA 152 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i-wd~~~~~~ 152 (449)
+.+..+.+.+++ .+++.+. ++.|.. ..+.+..-......+...+..+.+.++ +.+++++. +|.+.. +|- .+..
T Consensus 122 ~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~G~~~~S~d~-gG~t 195 (327)
T 2xbg_A 122 GSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS-GEYVAVSS-RGSFYSTWEP-GQTA 195 (327)
T ss_dssp SCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT-SCEEEEET-TSSEEEEECT-TCSS
T ss_pred CCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC-CcEEEEEC-CCcEEEEeCC-CCCc
Confidence 456778877766 5666654 454322 222233222222345667899999987 77766654 444433 332 1222
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEe-ecCCCceEEEEEcCCCCCEEE
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~ 231 (449)
-..+.... ...+..+.+.+++..+++ +.+|.+++.+...+..-...... ......+.++++.+ ++.+++
T Consensus 196 W~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~ 265 (327)
T 2xbg_A 196 WEPHNRTT--------SRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWL 265 (327)
T ss_dssp CEEEECCS--------SSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEE
T ss_pred eeECCCCC--------CCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEE
Confidence 22221111 123788888888876544 45677777642211110000000 01122588899988 677666
Q ss_pred EEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
++. +|.| ++....+..-..+... .....+.++.|.+++. +++++.+|.|.-++-
T Consensus 266 ~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 266 AGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 654 6766 3444333222212111 2345678888875554 666677887776653
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.64 E-value=0.028 Score=49.34 Aligned_cols=279 Identities=10% Similarity=0.072 Sum_probs=136.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEe---cccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG---NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
...+.+|.|.+.+ ..+++| ..|.| +...+.++.-.... ......+.+|.|.+ +..+ .++..+.|.. ..+.
T Consensus 35 ~~~~~~v~~~~~~-~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~-~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDRH-HGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGW-IVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSSS-CEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEE-EEEETTEEEE-ESST
T ss_pred CCcEEEEEECCCC-cEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEE-EEECCCeEEE-ECCC
Confidence 3469999998766 566655 45654 33333332211111 11245688999875 3344 4455665543 3333
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEE-EECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL-VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
|+.-........ ....+..+.+.+++..++++. +|.|.. .| .+.. -.. ........+..+++.+ ++.
T Consensus 108 G~tW~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~t-W~~-~~~~~~~~~~~~~~~~-~~~ 175 (327)
T 2xbg_A 108 GQSWSQIPLDPK------LPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKN-WQA-LVQEAIGVMRNLNRSP-SGE 175 (327)
T ss_dssp TSSCEECCCCTT------CSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSS-EEE-EECSCCCCEEEEEECT-TSC
T ss_pred CCCceECccccC------CCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCC-CEE-eecCCCcceEEEEEcC-CCc
Confidence 443222221100 001256777777776666554 554432 22 1211 111 1112233688999998 777
Q ss_pred EEEEEeCCCeEEE-EEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCC
Q 013086 229 LLLSCGNDHFARI-WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 307 (449)
Q Consensus 229 ~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 307 (449)
+++++. +|.+.. .|-. +..-..+ .......+..+.+.+++..++ ++.+|.+++.+...|+....... ....
T Consensus 176 ~~~~g~-~G~~~~S~d~g-G~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~----~~~~ 247 (327)
T 2xbg_A 176 YVAVSS-RGSFYSTWEPG-QTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLS----PLRR 247 (327)
T ss_dssp EEEEET-TSSEEEEECTT-CSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBC----TTSS
T ss_pred EEEEEC-CCcEEEEeCCC-CCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccC----Cccc
Confidence 776664 454443 3320 1111122 123456788999999887665 45578777764322221111100 0000
Q ss_pred ccccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecC--ccceeceeeecCCCCcEEeecCC
Q 013086 308 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP--NITTISPVNKLHPRDDVLASGSS 385 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~sd 385 (449)
.......+.+.+. +.+++ .+.++.| ++....|+.-..+... ....+..+ .|.+++.+++.|.+
T Consensus 248 ~~~~~~~v~~~~~---------~~~~~----~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v-~~~~~~~~~~~G~~ 312 (327)
T 2xbg_A 248 NSVGFLDLAYRTP---------NEVWL----AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI-LFFSPDQGFILGQK 312 (327)
T ss_dssp CCSCEEEEEESSS---------SCEEE----EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEE-EEEETTEEEEECST
T ss_pred CCcceEEEEecCC---------CEEEE----EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEE-EEECCCceEEEcCC
Confidence 1111234556553 22222 1223444 3444445433333321 12455666 67667777777779
Q ss_pred CeEEEEcC
Q 013086 386 RSIFIWRP 393 (449)
Q Consensus 386 g~i~iw~~ 393 (449)
|.|.-++-
T Consensus 313 G~i~~~~~ 320 (327)
T 2xbg_A 313 GILLRYVT 320 (327)
T ss_dssp TEEEEECC
T ss_pred ceEEEEcC
Confidence 98877764
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.60 E-value=0.032 Score=49.15 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=111.8
Q ss_pred eeeeccCccEEEEEEeCCCCcEEEEEc------------CCCcEEEEeCcCC--eeeEEEecc-----cCCceeEEEEee
Q 013086 67 AVIRYHSRRVTCLEFHPTNNHILLSGD------------KKGQVGVWDFYKV--SEKIVYGNI-----HSCIVNNIRFNP 127 (449)
Q Consensus 67 ~~~~~h~~~V~~~~~~~~~~~~l~t~~------------~d~~i~vwd~~~~--~~~~~~~~~-----h~~~v~~~~~~~ 127 (449)
..+.+-......+...++| .++++++ .+|.|.++|..+. ........+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp EECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred EEeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE
Confidence 3444422344566678887 4444431 6899999998742 221111111 234678888877
Q ss_pred C-CCC-eEEEEeC---CCeEEEEeCCCCce-eeee-ecCCCCCCCCCcccceeEEEEecCCCEEEEEc------------
Q 013086 128 T-NDG-TVYAASS---DGTVSCTDLETGLA-LSLM-NVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD------------ 188 (449)
Q Consensus 128 ~-~~~-~l~s~~~---dg~v~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------ 188 (449)
+ ++. +|+++.. +.+|.+|++..+.. ...+ .... ......+.+.+.++|.+.++..
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHH
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc------CCCCCCceEEEeCCCCEEecCCcEeCCcccccch
Confidence 3 132 4555532 46788887765322 1111 1111 1223488999999998777754
Q ss_pred -----CCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEccCCCCCCceeecCCCCcE
Q 013086 189 -----NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDLPHKRVV 262 (449)
Q Consensus 189 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 262 (449)
..|.|+.+|.. + .. ... ..-...+.++|+| +++.|..+ +..+.|..|++...........+......
T Consensus 196 ~~~~~~~g~vyr~d~~--~-~~-~~~--~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P 268 (355)
T 3sre_A 196 MHLGLAWSFVTYYSPN--D-VR-VVA--EGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV 268 (355)
T ss_dssp HHTTCCCEEEEEECTT--C-CE-EEE--EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred hhccCCccEEEEEECC--e-EE-Eee--cCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC
Confidence 23567777653 2 11 111 1112588999999 87665554 45789999998632111111112234566
Q ss_pred EEEEEcC-CCCEEEEeeCC
Q 013086 263 NSAYFSP-SGSKILTTSQD 280 (449)
Q Consensus 263 ~~~~~~~-~~~~l~~~~~d 280 (449)
-.+++.+ +|++.+++..+
T Consensus 269 DGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEECTTTCCEEEEEESC
T ss_pred ceEEEeCCCCcEEEEecCC
Confidence 7788888 48776655533
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.051 Score=48.57 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=150.9
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeE
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 174 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (449)
+.+|.|.|+.+...+.... -..-+...+|. .+.++.-. ..++.++|+++...+........ |.-
T Consensus 47 ~~~vvIiDl~~~~~~~rrp----i~AdsAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~~e~----------Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 110 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE----CCCSEEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEECSSC----------CCE
T ss_pred CCeEEEEECCCCCcceecc----cccceeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceecCCC----------ceE
Confidence 3479999998866654432 12245567887 77776665 78999999999999888877543 555
Q ss_pred EEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec--CCCceEEEEEcCCCCCEEEEEe-------CCCeEEEEEcc
Q 013086 175 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCG-------NDHFARIWDIR 245 (449)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~ 245 (449)
-.|-.+.. |+..+ +..|+.|++.....+...+..+. .+..|.....++ +.++++..+ -.|.+.+|...
T Consensus 111 WkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 111 WKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred EEecCCCe-EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc
Confidence 55554443 33333 35899999987544433333322 234677888888 777666543 24789999986
Q ss_pred CCCCCCceeecCCCCcEEEEEEcCC---CCEEEEeeC---CCcEEEEeCCCC-CCCCCCccceecCCCCccccceeeeec
Q 013086 246 RLEAGSSLCDLPHKRVVNSAYFSPS---GSKILTTSQ---DNRLRIWDSIFG-NLDSPSREIVHSHDFNRHLTPFRAEWD 318 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (449)
.. ..-...+|.+.-..+.+.-+ ..+++.+.. .+.++|.++... .-..+. ... ...+.|.
T Consensus 188 r~---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f---------~kk--~vdv~fp 253 (494)
T 1bpo_A 188 RK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---------PKK--AVDVFFP 253 (494)
T ss_dssp TC---CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC---------CCE--EEECCCC
T ss_pred cc---ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc---------cce--eeeeeCC
Confidence 42 11222256554444433221 123444433 378999998543 111111 100 1122333
Q ss_pred cCC---CCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 319 PKD---PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 319 ~~~---~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
|+. ....+.++.+|-. .|.-+.-|.|++||+++|.++..-+-.....+... .....+.+++..-.|.|.--.++.
T Consensus 254 pe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~-~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EETTTTEEEEEETTCEEEEEEECT
T ss_pred cccccCceeEEEecccCCE-EEEEecCceEEEEecccceeeeeecccCCceEEec-ccCCCCcEEEEccCceEEEEEEcc
Confidence 321 1111112111110 11234567899999999999987765442333322 233444445444477777776666
Q ss_pred chhhh
Q 013086 396 KSELV 400 (449)
Q Consensus 396 ~~~~~ 400 (449)
...+-
T Consensus 332 ~~ivp 336 (494)
T 1bpo_A 332 ENIIP 336 (494)
T ss_dssp TTHHH
T ss_pred ccchh
Confidence 55443
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.36 E-value=0.12 Score=49.77 Aligned_cols=202 Identities=9% Similarity=0.053 Sum_probs=119.6
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 153 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 153 (449)
..+.+|+|.+.+..++++-...+.|..+++......... .........+++.+.+++++++-+..+.|.+.++.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~- 426 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR- 426 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-
Confidence 357889999865466777667788999998765443333 233356788999876355555556678999999875433
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC--CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEE
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 231 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (449)
..+... . ......+++.|....|+.+.. .+.|...++...... . .....-...+.|++++..+.+.+
T Consensus 427 ~~l~~~--~------l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~-l~~~~l~~P~GlalD~~~~~LY~ 495 (619)
T 3s94_A 427 KILISE--D------LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--V-LVNTSLGWPNGLALDYDEGKIYW 495 (619)
T ss_dssp EEEECT--T------CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSCEEEEEEETTTTEEEE
T ss_pred EEEEEC--C------CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--E-EEeCCCCCCeeeEEcccCCEEEE
Confidence 222211 1 123889999998666665543 367777776543221 1 22223346889999983444445
Q ss_pred EEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 232 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 232 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
+=+..+.|..+++..... ..+.. ........|++..+ .+.++-...+.|...|..+|
T Consensus 496 aD~~~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 496 GDAKTDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EETTTTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EECCCCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 545567899999864322 22211 11112234555433 33333344567777777665
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.33 E-value=0.08 Score=47.27 Aligned_cols=150 Identities=9% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc----
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG---- 205 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---- 205 (449)
+..++.+- ++.||.-++..+..-+.+..+.. .....+..+..+|+|++||..+. ..|.+..+..+....
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~-----i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRH-----LVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTT-----CCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcc-----cccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 55555544 46777777764433444443310 01112778999999999999865 478888877332111
Q ss_pred -----c--eEEeec----CCCceEEEEEcCC--CCCEEEEEeCCCeEEEEEccCCCCCCc-ee----ec---CCCCcEEE
Q 013086 206 -----E--AILIHR----KGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSS-LC----DL---PHKRVVNS 264 (449)
Q Consensus 206 -----~--~~~~~~----~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~----~~---~~~~~v~~ 264 (449)
+ .+.... ...+|..+.|+|. .+..|++-..|+.|++||+........ +. .+ .....|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1 111111 2357999999994 245899999999999999986222111 11 01 12357889
Q ss_pred EEEcCCCCEEEEee--CCCcEEEE
Q 013086 265 AYFSPSGSKILTTS--QDNRLRIW 286 (449)
Q Consensus 265 ~~~~~~~~~l~~~~--~dg~i~vw 286 (449)
++|.+++-.|...+ .+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999887777744 77877654
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.27 E-value=0.042 Score=56.79 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=115.8
Q ss_pred cEEEEEE---eCCCCcEEEEEc----------CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCe
Q 013086 75 RVTCLEF---HPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 141 (449)
Q Consensus 75 ~V~~~~~---~~~~~~~l~t~~----------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 141 (449)
.+.|++. ..+...+|+.|. ..|.|.++++...+..........++|++++--. + +|++|- ...
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~--g-~Lla~i-g~~ 905 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN--G-KLLASI-NST 905 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET--T-EEEEEE-TTE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC--C-EEEEEc-CCE
Confidence 3445443 333335787775 3578999999765544444344678899887542 4 555544 478
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 221 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 221 (449)
|++|++...+.+. .....- ..+..+.....++++++|+.-..|.++..+........+........++++.
T Consensus 906 l~vy~l~~~~~L~-~~~~~~--------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~ 976 (1158)
T 3ei3_A 906 VRLYEWTTEKELR-TECNHY--------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVE 976 (1158)
T ss_dssp EEEEEECTTSCEE-EEEEEC--------CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEE
T ss_pred EEEEECCCCceEE-EEeecc--------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEE
Confidence 9999998665433 111000 0133334444688999999888777765443222212223333445788888
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCCC----CCcee---ecCCCCcEEEEEE---cCC---------CCEEEEeeCCCc
Q 013086 222 CNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLC---DLPHKRVVNSAYF---SPS---------GSKILTTSQDNR 282 (449)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~---~~~~~~~v~~~~~---~~~---------~~~l~~~~~dg~ 282 (449)
+-. ...++.+..+|.|.++....... .+.+. .+.....|+++.- .+. ...++.++.+|.
T Consensus 977 ~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A 977 ILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp EEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred EEc--cCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence 874 45788899999999987654211 11121 1223456777652 222 234677777888
Q ss_pred EEEEe
Q 013086 283 LRIWD 287 (449)
Q Consensus 283 i~vwd 287 (449)
|-+.-
T Consensus 1055 Ig~l~ 1059 (1158)
T 3ei3_A 1055 IGLVT 1059 (1158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.21 E-value=0.087 Score=45.38 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=74.6
Q ss_pred CCeEEEEe-CC-----CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEEC
Q 013086 130 DGTVYAAS-SD-----GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDA 198 (449)
Q Consensus 130 ~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 198 (449)
+.+++.|+ .+ ..+.+||+.+.+....-..+.. .. -.++ ...++.+++.|+.+ ..+.+||+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~---~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~ 85 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-----RR---YVAS-VSLHDRIYVIGGYDGRSRLSSVECLDY 85 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC-----CB---SCEE-EEETTEEEEECCBCSSCBCCCEEEEET
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh-----hc---cccE-EEECCEEEEEcCCCCCccCceEEEEEC
Confidence 44555555 22 3688999888765433221111 10 1112 22356677777654 46899999
Q ss_pred CCCC---CccceEEeecCCCceEEEEEcCCCCCEEEEEeCC-----CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCC
Q 013086 199 RTNS---RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 270 (449)
Q Consensus 199 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (449)
.+.. ... .............+.+ ++.+++.|+.+ ..+.+||+.+.+-. .+........-.+++. -+
T Consensus 86 ~~~~~~~W~~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~-~~ 159 (301)
T 2vpj_A 86 TADEDGVWYS-VAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWS-MLGDMQTAREGAGLVV-AS 159 (301)
T ss_dssp TCCTTCCCEE-ECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEE-EEEECSSCCBSCEEEE-ET
T ss_pred CCCCCCeeEE-CCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEE-ECCCCCCCcccceEEE-EC
Confidence 8765 221 1011111111222222 56777777654 36888998653321 1111111111112222 26
Q ss_pred CCEEEEeeCC-----CcEEEEeCCCCCC
Q 013086 271 GSKILTTSQD-----NRLRIWDSIFGNL 293 (449)
Q Consensus 271 ~~~l~~~~~d-----g~i~vwd~~~~~~ 293 (449)
+++++.|+.+ ..+.+||+.+.+-
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 7777777754 4588889876543
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.04 E-value=0.092 Score=45.26 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=54.2
Q ss_pred cEEEEEcCC----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCCCceeeeee
Q 013086 87 HILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALSLMN 157 (449)
Q Consensus 87 ~~l~t~~~d----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~ 157 (449)
.+++.|+.+ ..+.+||+.+..-...........-.+++.. + +.+++.|+.+ ..+.+||..+.+....-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-A-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-C-CEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 456666543 3578888877653332110011111122222 3 6677777644 358899998876544332
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC-----eEEEEECCCCC
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNS 202 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 202 (449)
.+.. .. -.+++. .++..++.|+.++ .+.+||+.+..
T Consensus 95 ~p~~-----r~---~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 95 MRDR-----RS---TLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CSSC-----CB---SCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCcc-----cc---ceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 2211 10 112222 2566777776543 57888887654
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.97 E-value=0.11 Score=44.96 Aligned_cols=105 Identities=10% Similarity=-0.048 Sum_probs=56.4
Q ss_pred cEEEEEcC--CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC----CeEEEEeCCCCceeeeeecCC
Q 013086 87 HILLSGDK--KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTVSCTDLETGLALSLMNVNP 160 (449)
Q Consensus 87 ~~l~t~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~ 160 (449)
.+++.|+. ...+.+||..+..-...........-.+++. -+ +.+++.|+.+ ..+.+||..+++....-..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WD-NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ET-TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-EC-CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 46666654 3568889988765332211111111112222 23 6677777654 678899998876554432221
Q ss_pred CCCCCCCcccceeEEEEecCCCEEEEEcCC------CeEEEEECCCCC
Q 013086 161 NGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDARTNS 202 (449)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 202 (449)
.. . ....+ .-++.+++.|+.+ ..+.+||+.+..
T Consensus 91 ~r-----~--~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 91 PR-----D--SLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CC-----B--SCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred cc-----c--ceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 11 0 01122 2256677777654 468899988754
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.97 E-value=0.18 Score=45.08 Aligned_cols=153 Identities=6% Similarity=0.008 Sum_probs=95.5
Q ss_pred eCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEeccc---CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce------
Q 013086 82 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH---SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA------ 152 (449)
Q Consensus 82 ~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------ 152 (449)
+.+|..++ .+- ++.||.-++.....-..+...+ -..|..+..+|+ +++|+..+ +..|.|-.+..+..
T Consensus 29 ~~n~t~i~-~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIV-FIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEE-EEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEE-EEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCcccc
Confidence 44554433 332 5788888887443333332221 236888999999 99998887 55899998874321
Q ss_pred ------eeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcCCCeEEEEECCCCCCccce-------EEeecCCCc
Q 013086 153 ------LSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGEA-------ILIHRKGSK 216 (449)
Q Consensus 153 ------~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~ 216 (449)
...+...... ......|..+.|+|- +..|++-..|+.|++||+......... +........
T Consensus 105 ~~~~~q~~ty~l~~~~---~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEE---VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHTTEEEEEEGGGCC-----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred cccccceeEEEcCCcc---cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 1123332211 112345999999994 568999999999999999863221110 111112246
Q ss_pred eEEEEEcCCCCCEEEEEe--CCCeEEEE
Q 013086 217 VVGLHCNPIQPELLLSCG--NDHFARIW 242 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~--~dg~i~iw 242 (449)
|.+++|.+ ++-.|...+ ..|.|+-.
T Consensus 182 v~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 88999998 777666655 77888764
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.88 E-value=0.21 Score=44.14 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=82.7
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcC-C---
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN-F--- 190 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d--- 190 (449)
.....|+|.|+ +.+ +++..+|.|.+++ .+......... .. .........++++|+ +..|.++.. .
T Consensus 31 ~~P~~ia~~pd-G~l-~V~e~~g~I~~i~--~g~~~~~~~~~-v~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 31 EVPWALAFLPD-GGM-LIAERPGRIRLFR--EGRLSTYAELS-VY---HRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp SCEEEEEECTT-SCE-EEEETTTEEEEEE--TTEEEEEEECC-CC---CSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCceEEEEcCC-CeE-EEEeCCCeEEEEE--CCCccEeecce-Ee---ecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 35679999998 764 4556679999998 44432222111 00 011224889999998 555555443 2
Q ss_pred --CeEEEEECCCCCCc--cceEE-ee---cCCCceEEEEEcCCCCCEEEEEeC-------------CCeEEEEEccCCC-
Q 013086 191 --GFLYLVDARTNSRS--GEAIL-IH---RKGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRLE- 248 (449)
Q Consensus 191 --g~i~i~d~~~~~~~--~~~~~-~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~- 248 (449)
+.|..++....... ..+.. .. ........++|.| ++.++++.+. .|.|.-++....-
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 67888887643211 11111 11 1111346899999 8877776432 2566666654200
Q ss_pred ----------CCCceeecCCCCcEEEEEEcC-CCCEEEEee
Q 013086 249 ----------AGSSLCDLPHKRVVNSAYFSP-SGSKILTTS 278 (449)
Q Consensus 249 ----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 278 (449)
....+...++ .....++|+| ++.++++-.
T Consensus 182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 0111212233 3467799999 666555543
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.87 E-value=0.22 Score=44.11 Aligned_cols=159 Identities=10% Similarity=0.065 Sum_probs=84.3
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE--Ee--cccCCceeEEEEeeC---CCCeEEEEeC
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YG--NIHSCIVNNIRFNPT---NDGTVYAASS 138 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~--~~--~~h~~~v~~~~~~~~---~~~~l~s~~~ 138 (449)
+..+...-..-..|+|.|+| +++++ ..+|.|.+++ .+..... +. .........|+|+|+ ++.++++-..
T Consensus 23 ~~~va~~l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp EEEEECCCSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 34444334456799999999 55555 5569999998 3332111 10 112356899999986 3444444332
Q ss_pred C-----CeEEEEeCCCCce---eeeee-cCCCCCCCCCcccceeEEEEecCCCEEEEEcC-------------CCeEEEE
Q 013086 139 D-----GTVSCTDLETGLA---LSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------FGFLYLV 196 (449)
Q Consensus 139 d-----g~v~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~ 196 (449)
. +.|..++...+.. ...+. .+... .. ......++|.|+|.+.++.+. .|.|.-+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~--~~--~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARP--HG--LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCT--TC--CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCC--CC--CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 2 6788888765421 11111 11100 00 112468999999976665432 2567667
Q ss_pred ECCCCC-----------CccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 197 DARTNS-----------RSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 197 d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
+....- ....... ... .....++|+|.++.++++-.
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEE
T ss_pred cCCCCCCCCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEc
Confidence 665310 0111111 111 14677899984455555543
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.87 E-value=0.042 Score=47.53 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=95.4
Q ss_pred cEEEEEcCC----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC------CeEEEEeCCCCceeeee
Q 013086 87 HILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTDLETGLALSLM 156 (449)
Q Consensus 87 ~~l~t~~~d----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~ 156 (449)
.+++.|+.+ ..+.+||..+..-...........-.+++. -+ +.+++.|+.+ ..+.+||..+.+....-
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AE-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ET-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-EC-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 677777754 578889988765433321111111122222 24 6677777654 46889999887654432
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEcC---------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
..+.. .. -.+++ ..++.+++.|+. ...+.+||+.+..-.... ...... .-.+++.. ++
T Consensus 135 ~~p~~-----r~---~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r-~~~~~~~~--~~ 201 (306)
T 3ii7_A 135 SMLTQ-----RC---SHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEAR-KNHGLVFV--KD 201 (306)
T ss_dssp CCSSC-----CB---SCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSSCC-BSCEEEEE--TT
T ss_pred CCcCC-----cc---eeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Cccchh-hcceEEEE--CC
Confidence 22111 10 11122 225666666653 345889998876422110 011111 11122222 55
Q ss_pred CEEEEEeCC-----CeEEEEEccCCCCCCceeecCC-CCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q 013086 228 ELLLSCGND-----HFARIWDIRRLEAGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 292 (449)
Q Consensus 228 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 292 (449)
.+++.|+.+ ..+.+||+.+.+-. .+..... ......+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTTEEE-ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 677777653 35888998753211 1111111 111222333 67777887754 467888886543
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.055 Score=46.67 Aligned_cols=188 Identities=12% Similarity=0.030 Sum_probs=95.0
Q ss_pred cEEEEEcCC-----CcEEEEeCcCCe---eeEEEecccCCceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCCCcee
Q 013086 87 HILLSGDKK-----GQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLAL 153 (449)
Q Consensus 87 ~~l~t~~~d-----~~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 153 (449)
.+++.|+.+ ..+.+||+.+.. -...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+..
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-G-DMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-C-CEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 677777754 468899987765 3222111111111222222 4 6666776643 36889999887655
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
..-..+... . -.+++ ..++.+++.|+.+ ..+.+||+.+..-.... ...........+.+ ++.
T Consensus 142 ~~~~~p~~r-----~---~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~---~~~ 208 (301)
T 2vpj_A 142 MLGDMQTAR-----E---GAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMATKRSGAGVALL---NDH 208 (301)
T ss_dssp EEEECSSCC-----B---SCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE---TTE
T ss_pred ECCCCCCCc-----c---cceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCcccccceEEEE---CCE
Confidence 443322111 0 11122 2266677777654 46889998775432110 01111111122222 567
Q ss_pred EEEEEeCC-----CeEEEEEccCCCCCCceeecCCC-CcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q 013086 229 LLLSCGND-----HFARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 292 (449)
Q Consensus 229 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 292 (449)
+++.|+.+ ..+.+||+.+.+-. .+...... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77887764 46899998753321 11111111 11122222 67777777765 356778876543
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.80 E-value=0.07 Score=46.05 Aligned_cols=191 Identities=14% Similarity=0.091 Sum_probs=95.3
Q ss_pred CCCcEEEEEcCC-----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC-----eEEEEeCCCCcee
Q 013086 84 TNNHILLSGDKK-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLAL 153 (449)
Q Consensus 84 ~~~~~l~t~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~ 153 (449)
++ .+++.|+.+ ..+.+||..+..-...........-.+++. -+ +.+++.|+.++ .+.+||+.+.+..
T Consensus 61 ~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LN-GLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET-TEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-EC-CEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 44 677787754 358889987765333221111111122222 23 66777777543 5788998887654
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-------CCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCC
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 226 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (449)
..-..+.. .. -.+++. -++..++.|+. ...+.+||+.+..-.... ......... +++.. +
T Consensus 138 ~~~~~p~~-----r~---~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~-~~~~~--~ 204 (302)
T 2xn4_A 138 HVAPMNTR-----RS---SVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTRRSGA-GVGVL--N 204 (302)
T ss_dssp EECCCSSC-----CB---SCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSCCBSC-EEEEE--T
T ss_pred ecCCCCCc-----cc---CceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccccccc-cEEEE--C
Confidence 43222111 11 112222 25666666653 245889998875422110 011111112 22222 5
Q ss_pred CCEEEEEeCC-----CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCC
Q 013086 227 PELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGN 292 (449)
Q Consensus 227 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 292 (449)
+.+++.|+.+ ..+.+||+.+.+-. .+........-.+++. -++++++.|+.++ .+.+||+.+.+
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 6778887764 36889998753221 1111111111111222 2677777877653 47888887554
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.75 E-value=0.27 Score=43.50 Aligned_cols=150 Identities=13% Similarity=0.040 Sum_probs=81.6
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcC----C
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN----F 190 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----d 190 (449)
.....|+|.|+ ++ |+++..+|.|++++ .+++ ....... .. .........++++|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d-~~G~-~~~~~~~-v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 29 EVPWSIAPLGG-GR-YLVTERPGRLVLIS-PSGK-KLVASFD-VA---NVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp SCEEEEEEEET-TE-EEEEETTTEEEEEC-SSCE-EEEEECC-CC---CSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCeEEEEcCC-Ce-EEEEeCCCEEEEEe-CCCc-eEeeccc-ee---ecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 45689999998 76 55556679999997 4454 2111111 00 001123889999998 555555443 3
Q ss_pred ----CeEEEEECCCCC--C--ccceEE-eec-CCCceEEEEEcCCCCCEEEEEeC-------------CCeEEEEEccCC
Q 013086 191 ----GFLYLVDARTNS--R--SGEAIL-IHR-KGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRL 247 (449)
Q Consensus 191 ----g~i~i~d~~~~~--~--~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 247 (449)
..|..|+..... . ...++. ... .......|+|.| ++.++++.+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 567778766431 1 001111 111 111356799999 8887776442 245665655321
Q ss_pred CC------CCceeecCCCCcEEEEEEcC-CCCEEEEe
Q 013086 248 EA------GSSLCDLPHKRVVNSAYFSP-SGSKILTT 277 (449)
Q Consensus 248 ~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 277 (449)
-. ...+...++. ....++|+| ++.++++-
T Consensus 180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 00 0122222343 356899999 66655543
No 317
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.71 E-value=0.25 Score=42.45 Aligned_cols=199 Identities=9% Similarity=0.075 Sum_probs=121.9
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-ceeeeee
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMN 157 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~ 157 (449)
.-.+|.. +++|.-. ..++.|+|+++...+.... ....|.--.|-. .+.|+-.+ +..|+.|++... ...+.+.
T Consensus 72 AIMnP~~-~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 72 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeeCCCc-cEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 3457776 5666554 6789999999998888775 567888888875 45566655 458999999753 3444443
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEc-------CCCeEEEEECCCCCCccceEEeecCCCceEEEEE--cCCCCC
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPE 228 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 228 (449)
.+..- . ...|.....+++.++++..+ -.|.+.+|..+..... ...+|...-..+.+ .+....
T Consensus 145 R~~~L-~----~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----~ieGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 145 RHSSL-A----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp CCGGG-T----TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE----EECCSEEEEEEECCTTCSSCEE
T ss_pred cchhc-c----cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc----eeeeeeeeeEEEecCCCCCCce
Confidence 32221 1 23477777888888776643 2368888888764321 22223111111111 110112
Q ss_pred EEEEEeC---CCeEEEEEccCCC-CCCce-----eec----CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 229 LLLSCGN---DHFARIWDIRRLE-AGSSL-----CDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 229 ~l~~~~~---dg~i~iwd~~~~~-~~~~~-----~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
+++.+.. .+.++|.++.... ....+ ..+ ...+-.-++..++....+..-+.-|.|++||+.++.+
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 3443332 2689999985431 11111 111 1244556788999888899999999999999999876
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.67 E-value=0.34 Score=50.35 Aligned_cols=269 Identities=12% Similarity=0.116 Sum_probs=137.3
Q ss_pred CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeE
Q 013086 95 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 174 (449)
Q Consensus 95 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (449)
..+|.|.|+.++..+.... -..-+...+|. .+.++.-. ..++.|+|+++...+........ |.-
T Consensus 47 ~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~~e~----------Vvf 110 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 110 (1630)
T ss_pred CceEEEEECCCCCCccccc----ccchhhccCCC-cceEEEec-CCeEEEeehHHhhhhcccccCCC----------ceE
Confidence 3478899998866543321 12234456776 66555554 78999999999888877766443 555
Q ss_pred EEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec--CCCceEEEEEcCCCCCEEEEEe-------CCCeEEEEEcc
Q 013086 175 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCG-------NDHFARIWDIR 245 (449)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~ 245 (449)
-.|-....+-+++ +..|+.|++.....+...+..+. .+..|..-..++ +.++++..+ -.|.+.+|...
T Consensus 111 WkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 111 WKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred EEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecc
Confidence 5665544433333 35799999976443333222221 134677778888 677666443 35889999986
Q ss_pred CCCCCCceeecCCCCcEEEEEEc--C-CCCEEEEeeC---CCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeecc
Q 013086 246 RLEAGSSLCDLPHKRVVNSAYFS--P-SGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 319 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
.... +.+ -+|.+....+... + ....++.+.. .+.++|-++....... ..+... ...+-|.|
T Consensus 188 r~~s-Q~i--egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~--------~~f~kk--~~~~~~~~ 254 (1630)
T 1xi4_A 188 RKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--------QPFPKK--AVDVFFPP 254 (1630)
T ss_pred cccc-hhh--hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC--------CCCccc--cccccCCc
Confidence 4222 111 1444333332221 1 1122222222 3689998885430000 011000 11223333
Q ss_pred C---CCCCceEEEcceecccCCCCCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCCc
Q 013086 320 K---DPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 396 (449)
Q Consensus 320 ~---~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~~ 396 (449)
+ +....+.++.++-. .+.-+.-|-|.+||+.||.++..-+-.....+... ...+.+.+++..-.|.|.--.+...
T Consensus 255 ~~~~Dfpv~~~vs~k~g~-iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~-~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ccccCcceEEEeccccCE-EEEEecCceEEEEecccchhhhhccccCCceEEec-cCCCCCceEEEcCCceEEEEEEccc
Confidence 2 11122222121111 11235567899999999998765543332222221 2333344444444566555554444
Q ss_pred h
Q 013086 397 S 397 (449)
Q Consensus 397 ~ 397 (449)
.
T Consensus 333 ~ 333 (1630)
T 1xi4_A 333 N 333 (1630)
T ss_pred h
Confidence 3
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.62 E-value=0.36 Score=43.26 Aligned_cols=200 Identities=9% Similarity=0.075 Sum_probs=123.9
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-ceeeee
Q 013086 78 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLM 156 (449)
Q Consensus 78 ~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~ 156 (449)
+.-.+|.. +++|.=. ..++.|+|+++...+.... ....|.--.|-.. +.|+..+ +..|+.|++... .....+
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~--~~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEET--TEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCC-cEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCC--CeEEEEc-CCeeEEecccCCCCchhhe
Confidence 34467776 5665544 6799999999988888775 5667888888764 5666665 568999999753 344444
Q ss_pred ecCCCCCCCCCcccceeEEEEecCCCEEEEEc-------CCCeEEEEECCCCCCccceEEeecCCCceEEEEEc--CCCC
Q 013086 157 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN--PIQP 227 (449)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 227 (449)
..+..- . ...|.....+++.++++..+ -.|.+.+|..+..... ...+|......+... +...
T Consensus 143 dR~~~L-~----~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----~ieGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 143 DRHSSL-A----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp ECCGGG-T----TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE----EECCSEEEEEEEECTTCSSEE
T ss_pred ecchhc-c----cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc----hheeeeeeeEEEecCCCCCCc
Confidence 332211 1 23477777888888776543 2478889988764321 222331112222221 1011
Q ss_pred CEEEEEeC---CCeEEEEEccCCC-CCCce-----eec----CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 228 ELLLSCGN---DHFARIWDIRRLE-AGSSL-----CDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 228 ~~l~~~~~---dg~i~iwd~~~~~-~~~~~-----~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
.+++.+.. .+.++|.++.... ....+ ..+ ...+-..++..++....+...+.-|.|++||+.++.+
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 24444433 2789999986531 11111 111 1244556789999888899999999999999999876
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.62 E-value=0.2 Score=40.30 Aligned_cols=187 Identities=10% Similarity=-0.006 Sum_probs=97.1
Q ss_pred cEEEEEcCCCcEEEEeCcCCe------eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 013086 87 HILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 160 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 160 (449)
.+|++...| +++.=...... ....+..+--..+..++|+|+ +.+.++ .+|.+.-.+..+.....-+...
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~- 79 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRA- 79 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHC-
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccc-
Confidence 456666666 54443333322 122222211347889999997 775555 6787777665442221111100
Q ss_pred CCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc---ceEEeec-CCCceEEEEEcCCCCCEEEEEeCC
Q 013086 161 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG---EAILIHR-KGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
. .-+...+....++.|.+++.+.++ .||.|+-++..+..... ....... .=..+..|.+.| ++.+.++. |
T Consensus 80 t-~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 80 K-KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp E-EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred c-EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--C
Confidence 0 000011122578899999998888 55999888764422111 1011111 113588999999 88877776 7
Q ss_pred CeEEEEEccCCCCCCc---eeec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 013086 237 HFARIWDIRRLEAGSS---LCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 288 (449)
Q Consensus 237 g~i~iwd~~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 288 (449)
+.++-....+.....- ...+ ..-..-..+.|.+++.+.++. ++ ++|..
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 7754332221111000 0011 122234456788888877766 66 44443
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.57 E-value=0.36 Score=42.66 Aligned_cols=157 Identities=9% Similarity=0.056 Sum_probs=83.4
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeee-EEE--ecccCCceeEEEEeeC---CCCeEEEEeC-
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-IVY--GNIHSCIVNNIRFNPT---NDGTVYAASS- 138 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~-~~~--~~~h~~~v~~~~~~~~---~~~~l~s~~~- 138 (449)
+..+...-..-..|+|.|+| +++++ ..+|.|++++. .+... ..+ ..........|+|+|+ ++.++++-+.
T Consensus 21 ~~~va~~l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~ 97 (354)
T 3a9g_A 21 ISEVASDLEVPWSIAPLGGG-RYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF 97 (354)
T ss_dssp EEEEECSCSCEEEEEEEETT-EEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred EEEEeCCCCCCeEEEEcCCC-eEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence 34444344567899999999 55554 55699999974 33311 111 0112346889999985 3444444332
Q ss_pred --C----CeEEEEeCCCC--ce---eeeee-cCCCCCCCCCcccceeEEEEecCCCEEEEEcC-------------CCeE
Q 013086 139 --D----GTVSCTDLETG--LA---LSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------FGFL 193 (449)
Q Consensus 139 --d----g~v~iwd~~~~--~~---~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i 193 (449)
+ ..|..|+...+ .. ...+. .+... . .....++|.|++.++++.+. .|.|
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~----~--h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I 171 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAY----I--HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKI 171 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCS----S--CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEE
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCC----C--cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEE
Confidence 3 56777876654 11 11111 11110 1 12567999999986666432 2566
Q ss_pred EEEECCCCCC------ccceEEeecCCCceEEEEEcCCCCCEEEEE
Q 013086 194 YLVDARTNSR------SGEAILIHRKGSKVVGLHCNPIQPELLLSC 233 (449)
Q Consensus 194 ~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (449)
..++....-. ...+. .... .....++|+|..+.++++-
T Consensus 172 ~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 172 LRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp EEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEE
T ss_pred EEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEe
Confidence 6666543200 01111 1111 1466899998445555543
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.53 E-value=0.25 Score=43.52 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCCeEEEEeCCCC-ceeeeeecCCCCCCCCCcccceeEEEEec--CCC-EEEEE-cC--CCeEEEEECCCCCCccceEEe
Q 013086 138 SDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINP--EKG-VVLVA-DN--FGFLYLVDARTNSRSGEAILI 210 (449)
Q Consensus 138 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~ 210 (449)
.+|.|.++|..+. .....+......+. ...-....+.+.+ ++. +|+++ .. +..|.+|++............
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~--~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLD--ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCC--GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCC--cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence 6899999998742 11222322110000 0111366777766 343 34444 33 467888877654332222221
Q ss_pred e--cCCCceEEEEEcCCCCCEEEEEe-----------------CCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCC
Q 013086 211 H--RKGSKVVGLHCNPIQPELLLSCG-----------------NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 271 (449)
Q Consensus 211 ~--~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (449)
. ..-...+.+++.+ ++.+.++.. ..|.|+-+|.. + ...+ ...-...+.++|+||+
T Consensus 159 ~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~--~~~l~~pNGia~spDg 232 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVV--AEGFDFANGINISPDG 232 (355)
T ss_dssp ECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEE--EEEESSEEEEEECTTS
T ss_pred cccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEe--ecCCcccCcceECCCC
Confidence 1 2224588999998 888777654 12556666642 1 1111 1233457899999999
Q ss_pred CEEEEee-CCCcEEEEeCCC
Q 013086 272 SKILTTS-QDNRLRIWDSIF 290 (449)
Q Consensus 272 ~~l~~~~-~dg~i~vwd~~~ 290 (449)
+.|+++. ..+.|..|++..
T Consensus 233 ~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEECC
Confidence 8887765 478999999863
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.40 E-value=0.47 Score=41.94 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=84.2
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee--eEEE---ecccCCceeEEEEeeC---CCCeE
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVY---GNIHSCIVNNIRFNPT---NDGTV 133 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~--~~~~---~~~h~~~v~~~~~~~~---~~~~l 133 (449)
....+..+...-..-..|+|.|+|..++++ ...|.|++++...... ...+ ..........|+|+|+ ++.+.
T Consensus 6 ~g~~~~~va~~l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 6 ATVNVEVLQDKLDHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp CCSEEEEEEEEESSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 334445554444567899999999325554 4578999998543211 1101 0112345789999984 25444
Q ss_pred EEEeC-------CCeEEEEeCCCC--ce--ee-eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------------
Q 013086 134 YAASS-------DGTVSCTDLETG--LA--LS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------------ 189 (449)
Q Consensus 134 ~s~~~-------dg~v~iwd~~~~--~~--~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------ 189 (449)
++-+. ...|..|++..+ .. .. .+...... . ........++|.|++.++++.+.
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~--~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~ 161 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL-S--TGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDK 161 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCC-B--SSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTS
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCC-C--CCcccCccEEECCCCcEEEEECCCCCCCccCCCCC
Confidence 44332 235666666533 11 11 11111100 0 01112467999999966555433
Q ss_pred -CCeEEEEECCCCCC-----------ccceEEeecCCCceEEEEEcCCCCCEEEE
Q 013086 190 -FGFLYLVDARTNSR-----------SGEAILIHRKGSKVVGLHCNPIQPELLLS 232 (449)
Q Consensus 190 -dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (449)
.|.|.-++....-. ..+... ..+ .....++|+|..+.++++
T Consensus 162 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 162 LQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEE
Confidence 25677777653210 112211 122 247889999833444333
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.38 E-value=0.11 Score=41.90 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=80.1
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee------eEEEec-ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGN-IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~------~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.+..++|+|+| .+.+. .+|.+.-.+..+... -..+-. +.. .-.++.|.|+ +.+.++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~-G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPN-GYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTT-SCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCC-CCEEEe--CCCEEEEeCC
Confidence 56699999998 55555 567766555533111 111111 111 1478889987 766655 5699988875
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCc----cceEEeecCCCceEEEEEc
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----GEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~ 223 (449)
.+.....-+.. ...-+...+..+..+.+.|+|.+.++. ++.++-....+.... .........-.....+.|.
T Consensus 115 P~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceecc--ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 43211110000 000011223458999999999988888 677544333221110 0111111211234456688
Q ss_pred CCCCCEEEEEeCCCeE
Q 013086 224 PIQPELLLSCGNDHFA 239 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i 239 (449)
+ ++.++++. +|.+
T Consensus 191 ~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 S-VGTLFGVQ--GGKF 203 (236)
T ss_dssp T-TSCEEEEE--TTEE
T ss_pred C-CCcEEEEe--CCeE
Confidence 7 77766665 6633
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.36 E-value=0.6 Score=42.84 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=67.1
Q ss_pred ccccceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEE--Eecc-----cCCceeEEEEeeC---CCC
Q 013086 62 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YGNI-----HSCIVNNIRFNPT---NDG 131 (449)
Q Consensus 62 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~--~~~~-----h~~~v~~~~~~~~---~~~ 131 (449)
....+..+...-..-..|+|.|+| +++++-...+.|++++..++..... +... .......|+|+|+ ++.
T Consensus 15 ~gf~~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 15 ENFDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TTSCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CCeEEEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 334445554445567899999999 6666654445788887654433221 1111 2456779999994 355
Q ss_pred eEEEEeC------------CCeEEEEeCCCC--ce---eeeee-cCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 132 TVYAASS------------DGTVSCTDLETG--LA---LSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 132 ~l~s~~~------------dg~v~iwd~~~~--~~---~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
+.++-+. ...|.-|+...+ .. ...+. .... .......|+|.|+|.+.++.+
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~------~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS------KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC------SSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC------CCCCCCeEeECCCCeEEEEEC
Confidence 5554432 235666655432 11 11111 1111 112378999999998777654
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.25 E-value=0.51 Score=40.88 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=70.6
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----CC-------eEEEEeCCCCceeee
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DG-------TVSCTDLETGLALSL 155 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg-------~v~iwd~~~~~~~~~ 155 (449)
.+++.|+. .+.+||..+.+-...................+ +.+++.|+. ++ .+.+||..+.+....
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 34555553 47889988776443221111111222222334 777777773 12 277888887765443
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-------CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
-..+.. .. -.+++. -++..++.|+.+ ..+.+||+.+.+-.... ...... .-.+++. . ++.
T Consensus 94 ~~~p~~-----r~---~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r-~~~~~~~-~-~~~ 160 (318)
T 2woz_A 94 PPLPSA-----RC---LFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV-YGHNVIS-H-NGM 160 (318)
T ss_dssp SCBSSC-----BC---SCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE-ESCEEEE-E-TTE
T ss_pred CCCCcc-----cc---ccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc-cccEEEE-E-CCE
Confidence 222111 11 112222 256677777643 35888898775422100 000000 0111222 2 667
Q ss_pred EEEEEeC------CCeEEEEEccCC
Q 013086 229 LLLSCGN------DHFARIWDIRRL 247 (449)
Q Consensus 229 ~l~~~~~------dg~i~iwd~~~~ 247 (449)
+++.|+. -..+.+||+.+.
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTT
T ss_pred EEEEcCCCCCCCccceEEEEcCCCC
Confidence 7777764 235888888753
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.21 E-value=0.3 Score=42.35 Aligned_cols=187 Identities=10% Similarity=0.040 Sum_probs=93.2
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----C-------CeEEEEeCCCCceeee
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----D-------GTVSCTDLETGLALSL 155 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~ 155 (449)
.+++.|+ ..+.+||..+.+-...-...............+ +.+++.|+. + ..+.+||..+++....
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 3556666 579999998876443221111122222222334 777777773 1 1277889888765433
Q ss_pred eecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC--------CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
-..+.. .. -.+++. -++..++.|+.+ ..+.+||+.+.+-.... ......... +++.. ++
T Consensus 83 ~~~p~~-----r~---~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~-~~~~~--~~ 149 (315)
T 4asc_A 83 PPLPSP-----RC---LFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYVVYGH-TVLSH--MD 149 (315)
T ss_dssp CCBSSC-----EE---SCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSCCBSC-EEEEE--TT
T ss_pred CCCCcc-----hh---ceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCcccce-eEEEE--CC
Confidence 221111 10 111222 256666666632 36889998875422110 011111111 22222 56
Q ss_pred CEEEEEeC-C-----CeEEEEEccCCCCCCceeecCCCC-cEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCC
Q 013086 228 ELLLSCGN-D-----HFARIWDIRRLEAGSSLCDLPHKR-VVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGN 292 (449)
Q Consensus 228 ~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 292 (449)
.+++.|+. + ..+.+||+.+.+-.. +....... .-..+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 77788776 2 368899987532111 11111111 1112222 677777777654 57888887654
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.13 E-value=0.13 Score=44.51 Aligned_cols=189 Identities=9% Similarity=-0.025 Sum_probs=92.3
Q ss_pred cEEEEEcC----C-----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-----CeEEEEeCCCCce
Q 013086 87 HILLSGDK----K-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLA 152 (449)
Q Consensus 87 ~~l~t~~~----d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 152 (449)
++++.|+. + ..+.+||+.+..-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+.
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-D-GHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-T-TEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-C-CEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 67777765 2 4688899877653322111111111122222 3 6666666543 3688999988765
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 227 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (449)
...-..+.. .. -.+++. -++.+++.|+.+ ..+.+||+.+..-.... ...........+.+ ++
T Consensus 150 ~~~~~~p~~-----r~---~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~ 216 (308)
T 1zgk_A 150 HLVAPMLTR-----RI---GVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNTIRSGAGVCVL---HN 216 (308)
T ss_dssp EECCCCSSC-----CB---SCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE---TT
T ss_pred eECCCCCcc-----cc---ceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCCccccceEEEE---CC
Confidence 443222111 10 112222 256677777644 46889998775422110 01111111222222 56
Q ss_pred CEEEEEeCC-----CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q 013086 228 ELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 292 (449)
Q Consensus 228 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 292 (449)
.+++.|+.+ ..+.+||+.+.+-.. +........-.+++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 777887764 468999987532211 1111111111122222 66777777754 356778876543
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.09 E-value=0.19 Score=43.58 Aligned_cols=190 Identities=8% Similarity=0.013 Sum_probs=91.2
Q ss_pred CCCcEEEEEcC-----C------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC--------CeEEE
Q 013086 84 TNNHILLSGDK-----K------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--------GTVSC 144 (449)
Q Consensus 84 ~~~~~l~t~~~-----d------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------g~v~i 144 (449)
++ .+++.|+. . ..+.+||..+..-...........-.+++.. + +.+++.|+.+ ..+.+
T Consensus 45 ~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 45 EN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEEE
T ss_pred CC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEEE
Confidence 44 57777763 1 1277888877653221110011111122222 3 6666666632 45889
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-C-----CeEEEEECCCCCCccceEEeecCCCceE
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-F-----GFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
||..+.+....-..+.. . .-.++ ...++..++.|+. + ..+.+||+.+..-.... ..........
T Consensus 122 ~d~~~~~W~~~~~~p~~-----r---~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~ 191 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYV-----V---YGHTV-LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTARSLFG 191 (315)
T ss_dssp EETTTTEEEECCCCSSC-----C---BSCEE-EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSCCBSCE
T ss_pred ECCCCCcEeECCCCCCc-----c---cceeE-EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCchhceE
Confidence 99988765433222111 1 01122 2245666777765 2 47899998875422110 0111111122
Q ss_pred EEEEcCCCCCEEEEEeCCC-----eEEEEEccCCCCCCceeecCCCC-cEEEEEEcCCCCEEEEeeCCC-----------
Q 013086 219 GLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKR-VVNSAYFSPSGSKILTTSQDN----------- 281 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg----------- 281 (449)
++.+ ++.+++.|+.++ .+.+||+.+.+-. .+....... ....+.+ ++++++.|+.++
T Consensus 192 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 192 ATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKWA-PFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp EEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEEE-EECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEE
T ss_pred EEEE---CCEEEEEeccCCCCccceEEEEECCCCeEE-ECCCCCCcccceeEEEE--CCEEEEECCccccCcCCcccccc
Confidence 2222 567788877654 5888998753211 111111111 1122222 667777777532
Q ss_pred ---cEEEEeCCCCC
Q 013086 282 ---RLRIWDSIFGN 292 (449)
Q Consensus 282 ---~i~vwd~~~~~ 292 (449)
.+.+||+.+.+
T Consensus 266 ~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 266 ELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEEETTTTE
T ss_pred ccCcEEEecCCCCh
Confidence 36678876543
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.01 Score=51.79 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=102.4
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEe--eCCCCeEEEE--eCCCeEEEEeCCCCceeeeeecCCCCC
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAA--SSDGTVSCTDLETGLALSLMNVNPNGW 163 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~ 163 (449)
+++.++.||.|.-.|..+++....+......++....-. +. +..++.+ +.||.|..++..+|.....+..+....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~-~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLE-TYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTT-SSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcccc-CCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 678888999999999999998888753311232221100 11 2234444 579999999998886655444321100
Q ss_pred CCCCcccceeEEEEe-----------cCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCC----CceEEEEEc----C
Q 013086 164 HGPRTWRMLYGMDIN-----------PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG----SKVVGLHCN----P 224 (449)
Q Consensus 164 ~~~~~~~~i~~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~ 224 (449)
..-+... ..+..+++|+.+|.+...|+++++............ ....|.... .
T Consensus 91 --------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 91 --------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp --------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred --------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 0001111 146678899999999999999988654321110000 000111110 0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCceee--c-CCCC--cE-EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 013086 225 IQPELLLSCGNDHFARIWDIRRLEAGSSLCD--L-PHKR--VV-NSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 293 (449)
Q Consensus 225 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (449)
..+..++.+..+..+.+.+ ++++ .-.+.. . .... .+ .+-..+.++.+ ++++.||.|.-+|..+|..
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 1235677777777777766 3322 111110 0 0000 00 00001124565 4578899999999887764
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.02 E-value=0.25 Score=51.29 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=116.4
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCC-ceeeeee
Q 013086 79 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMN 157 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~ 157 (449)
.-.+|.. +++|.=. ..++.|+|+++...+.... ....|.--.|-.. +.|+..+ +..|..|++... .+...+.
T Consensus 71 AIMnP~~-~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 71 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred hccCCCc-ceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC--CeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 3456666 5555544 6789999999887777664 4567887788753 4555555 458999999642 2222222
Q ss_pred cCCCCCCCCCcccceeEEEEecCCCEEEEEc-------CCCeEEEEECCCCCCccceEEeecCCCceEEEEE--cCCCCC
Q 013086 158 VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPE 228 (449)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 228 (449)
.+..- . ...|..-..+++.++++..+ -.|.+.+|........ .+.+|.. ....+.. .+....
T Consensus 144 R~~~L-~----~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~--~F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 144 RHSSL-A----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAA--SFAQFKMEGNAEEST 214 (1630)
T ss_pred cchhc-c----cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHh--hhheeccCCCCCCce
Confidence 22110 1 12377777788888776543 3478888888764321 1122211 1111111 111122
Q ss_pred EEEEEeC---CCeEEEEEccCC-CCCCcee-----e-cC---CCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 229 LLLSCGN---DHFARIWDIRRL-EAGSSLC-----D-LP---HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 229 ~l~~~~~---dg~i~iwd~~~~-~~~~~~~-----~-~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
+++.+.. .+.++|.++... .....+. . +. ...-..++..++....+...+.-|.|.+||+.||.++-
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 3332222 268999988553 1111111 0 11 23344578888877888888999999999999998743
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.99 E-value=0.36 Score=41.85 Aligned_cols=149 Identities=10% Similarity=0.049 Sum_probs=72.7
Q ss_pred CCCCcEEEEEcC----CC-------cEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC-------CeEEE
Q 013086 83 PTNNHILLSGDK----KG-------QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-------GTVSC 144 (449)
Q Consensus 83 ~~~~~~l~t~~~----d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------g~v~i 144 (449)
.++ .+++.|+. ++ .+.+||..+..-...........-.+++.. + +.+++.|+.+ ..+.+
T Consensus 55 ~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEE
T ss_pred ECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C-CEEEEEcCccCCCCcccceEEE
Confidence 344 67777773 11 167788776543322110111111222222 3 6677777753 35788
Q ss_pred EeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------CCeEEEEECCCCCCccceEEeecCCCceE
Q 013086 145 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSKVV 218 (449)
Q Consensus 145 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 218 (449)
||..+.+....-..+.. . .-.+++ ..++.+++.|+. ...+.+||+.+..-.... .........
T Consensus 132 yd~~~~~W~~~~~~p~~-----r---~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~- 200 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIK-----V---YGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTPRSMF- 200 (318)
T ss_dssp EETTTTEEEEECCCSSC-----E---ESCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSCCBSC-
T ss_pred EeCCCCCEeECCCCCCc-----c---cccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCCcccc-
Confidence 89888765543222111 0 011122 245666677653 236899998875422110 011111111
Q ss_pred EEEEcCCCCCEEEEEeCC-----CeEEEEEccCC
Q 013086 219 GLHCNPIQPELLLSCGND-----HFARIWDIRRL 247 (449)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 247 (449)
+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 201 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 201 GVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred eEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 22222 56777777643 35778888753
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.99 E-value=0.73 Score=40.35 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=85.9
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEE---cCC
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVA---DNF 190 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~---~~d 190 (449)
-.....|+|.|+ +.++++--..|.|++++..+++........... .........++++|+ +..|.+. ..+
T Consensus 31 L~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~---~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVS---PSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCC---CBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCcee---ecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 445789999998 776666555899999987666543222121110 111234889999995 4445443 244
Q ss_pred CeEEEEECCCCC----C---ccceEE-ee-cCCCceEEEEEcCCCCCEEEEEeC-------------CCeEEEEEccCCC
Q 013086 191 GFLYLVDARTNS----R---SGEAIL-IH-RKGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRLE 248 (449)
Q Consensus 191 g~i~i~d~~~~~----~---~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~ 248 (449)
+.|.-|.+.... . ...++. .. ........|+|.| ++.++++.+. .|.|.-.+....-
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 567767665421 1 111111 11 1112456799999 8887777542 3455555543210
Q ss_pred C------CCceeecCCCCcEEEEEEcCCCCEEEEe
Q 013086 249 A------GSSLCDLPHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 249 ~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 277 (449)
. ...+...++. ....++|+|+|.++++-
T Consensus 186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 0 1123333554 45689999988766543
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.98 E-value=0.24 Score=42.80 Aligned_cols=188 Identities=10% Similarity=-0.082 Sum_probs=92.8
Q ss_pred cEEEEEcCC----CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeC----C-----CeEEEEeCCCCcee
Q 013086 87 HILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----D-----GTVSCTDLETGLAL 153 (449)
Q Consensus 87 ~~l~t~~~d----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-----g~v~iwd~~~~~~~ 153 (449)
.+++.|+.+ ..+.+||..+..-...........-.+++.. + +.+++.|+. + ..+.+||..+.+..
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 566766632 3688899877653322110111111122222 3 666666665 2 45889998887654
Q ss_pred eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC-----CeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC
Q 013086 154 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 228 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (449)
..-..+.. .. ....+. -++.+++.|+.+ ..+.+||+.+..-.... ...........+.+ ++.
T Consensus 104 ~~~~~p~~-----r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~ 170 (308)
T 1zgk_A 104 PCAPMSVP-----RN--RIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVL---NRL 170 (308)
T ss_dssp ECCCCSSC-----CB--TCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE---TTE
T ss_pred ECCCCCcC-----cc--ccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceEEEEE---CCE
Confidence 43222111 11 111222 256667776533 36888998775422110 01111111122222 567
Q ss_pred EEEEEeCC-----CeEEEEEccCCCCCCceeecCCC-CcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q 013086 229 LLLSCGND-----HFARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 292 (449)
Q Consensus 229 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 292 (449)
+++.|+.+ ..+.+||+.+.+-.. +...... ..-..+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 77777754 458889986532111 1111111 11122223 67777777764 468899987654
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.90 E-value=0.89 Score=41.70 Aligned_cols=170 Identities=12% Similarity=0.172 Sum_probs=90.6
Q ss_pred CceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC---CCEEEEEcC-----
Q 013086 118 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN----- 189 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----- 189 (449)
.....|+|.|+ ++++++-...+.|++++..++.......+... .........+..++|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~-~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEI-VNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTC-CCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCcc-ccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45679999998 77666654445788888665654333222211 100111234789999996 555555432
Q ss_pred --------CCeEEEEECCCCC--C--ccceEE-ee-cCCCceEEEEEcCCCCCEEEEEeCC-------------------
Q 013086 190 --------FGFLYLVDARTNS--R--SGEAIL-IH-RKGSKVVGLHCNPIQPELLLSCGND------------------- 236 (449)
Q Consensus 190 --------dg~i~i~d~~~~~--~--~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~d------------------- 236 (449)
...|.-++..... . ...++. .. ........|+|.| ++.++++.+..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~ 183 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPT 183 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccc
Confidence 2356666654321 0 111111 11 1112578999999 88877775532
Q ss_pred -------------CeEEEEEccCCCC---------CCceeecCCCCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCC
Q 013086 237 -------------HFARIWDIRRLEA---------GSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFG 291 (449)
Q Consensus 237 -------------g~i~iwd~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~ 291 (449)
|.|.-++....-. ...+...+| .....++|+|+|.++++- +.++.-.|.-+..|
T Consensus 184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 3344444332100 112223345 357789999988766553 33444555555544
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.077 Score=46.31 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=80.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeeeecCC-CCCCCCCcccceeEEEE--ecCCCEEEEE--cCCCeEEEEECCCCCCc
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDI--NPEKGVVLVA--DNFGFLYLVDARTNSRS 204 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~--~~~~~~l~~~--~~dg~i~i~d~~~~~~~ 204 (449)
+..++.++.||.|.-+|..+|+....+.... .+ +....- .+.+..++++ +.||.|+.++..++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p---------~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQP---------LIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCC---------SEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCC---------cEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 4578999999999999999999998887641 11 111000 0122234443 68999999998776332
Q ss_pred cceEEeec--CCCceEEEEEcC-C-------CCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCc-----EEEEEEc-
Q 013086 205 GEAILIHR--KGSKVVGLHCNP-I-------QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRV-----VNSAYFS- 268 (449)
Q Consensus 205 ~~~~~~~~--~~~~v~~~~~~~-~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~~- 268 (449)
... .... ...++.. .-.| . .+..+++|+.+|.+...|+++++....+..-..... ..|....
T Consensus 81 ~~~-~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d 158 (339)
T 2be1_A 81 LPL-SIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEK 158 (339)
T ss_dssp EEE-EHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------
T ss_pred eee-ccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccc
Confidence 111 1100 1112221 1000 0 346788999999999999998665433321111110 1111111
Q ss_pred ----CCCCEEEEeeCCCcEEEEeCCCC
Q 013086 269 ----PSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 269 ----~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
-.+..|+.+..+..+.+.+ ++|
T Consensus 159 ~~~d~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 159 IKLQECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp ------CCEEEEEEEEEECEECC-TTS
T ss_pred cccccCCCeEEEecceEEEEEEC-CCC
Confidence 1245677777776776666 444
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.46 E-value=0.65 Score=40.98 Aligned_cols=140 Identities=8% Similarity=-0.122 Sum_probs=63.7
Q ss_pred CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC------CCeEEEEEC--CCCCCccceEEee
Q 013086 140 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDA--RTNSRSGEAILIH 211 (449)
Q Consensus 140 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~ 211 (449)
..+.+||..+.+....-..+.... .-.+++. -++.+++.|+. ...+..||+ .+..-.. .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~ 238 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGT-------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVS 238 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCC-------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCc-------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCC
Confidence 578999998876655433221110 0012222 25566666653 345777876 3322110 00000
Q ss_pred cCCCc-eEEEEEcCCCCCEEEEEeCC----------------------CeEEEEEccCCCCCCceeecCCC-CcEEEEEE
Q 013086 212 RKGSK-VVGLHCNPIQPELLLSCGND----------------------HFARIWDIRRLEAGSSLCDLPHK-RVVNSAYF 267 (449)
Q Consensus 212 ~~~~~-v~~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~ 267 (449)
..... -.+++.. ++.+++.|+.+ ..+.+||+.+.+-. .+..+... ..-.++
T Consensus 239 ~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-- 313 (357)
T 2uvk_A 239 SPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD-KSGELSQGRAYGVSL-- 313 (357)
T ss_dssp TTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE-EEEECSSCCBSSEEE--
T ss_pred CCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee-eCCCCCCCcccceeE--
Confidence 00001 1112222 56777777632 25778998754321 12222111 111222
Q ss_pred cCCCCEEEEeeCCC------cEEEEeCCCCCC
Q 013086 268 SPSGSKILTTSQDN------RLRIWDSIFGNL 293 (449)
Q Consensus 268 ~~~~~~l~~~~~dg------~i~vwd~~~~~~ 293 (449)
..++++++.|+.++ .+.++++++++.
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 23678888888643 355668877665
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.38 E-value=0.55 Score=41.46 Aligned_cols=96 Identities=9% Similarity=-0.088 Sum_probs=47.1
Q ss_pred CCCcEEEEEcC-CCcEEEEeCcCCeeeEEEecc-c--CCceeEEEEeeCCCCeEEEEeC-C---------CeEEEEeCCC
Q 013086 84 TNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNI-H--SCIVNNIRFNPTNDGTVYAASS-D---------GTVSCTDLET 149 (449)
Q Consensus 84 ~~~~~l~t~~~-d~~i~vwd~~~~~~~~~~~~~-h--~~~v~~~~~~~~~~~~l~s~~~-d---------g~v~iwd~~~ 149 (449)
++ ++++.|+. ...+.++|+............ . ...-.+++.. + +.+++.|+. + ..+.+||+.+
T Consensus 19 ~~-~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 ND-TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TT-EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T-TEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CC-EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C-CEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 44 67777764 356888898642111111111 1 1111222222 3 666666665 2 4688999988
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
.+........+.. .. -.++ ...++.+++.|+.+
T Consensus 96 ~~W~~~~~~~p~~------r~-~~~~-~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMG------MA-GHVT-FVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSC------CS-SEEE-EEETTEEEEEECCC
T ss_pred CcEEECCCCCCcc------cc-cceE-EEECCEEEEEeCcC
Confidence 7654433221011 00 1122 22567777888754
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.26 E-value=0.62 Score=45.50 Aligned_cols=197 Identities=9% Similarity=0.058 Sum_probs=100.8
Q ss_pred cEEEEEcCC----CcEEEEeCcCCeeeEEE-e-----cccCCceeEEEEee-CCCCeEEEEeCC------CeEEEEeCCC
Q 013086 87 HILLSGDKK----GQVGVWDFYKVSEKIVY-G-----NIHSCIVNNIRFNP-TNDGTVYAASSD------GTVSCTDLET 149 (449)
Q Consensus 87 ~~l~t~~~d----~~i~vwd~~~~~~~~~~-~-----~~h~~~v~~~~~~~-~~~~~l~s~~~d------g~v~iwd~~~ 149 (449)
.+++.|+.+ ..+.+||..+....... . ......-.+++..+ + +.+++.|+.+ ..+.+||..+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeCCC
Confidence 677777753 46888888776543332 1 01111123333332 4 6777777653 3578899888
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCC--eEEEEECCCCCCccceEE--eecCCCceEEEEEcCC
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--FLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPI 225 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~ 225 (449)
......-..+.. ..-.+++...++..++.|+.++ .+.+||+.+......... .........++.+...
T Consensus 478 ~~W~~~~~~p~~--------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 478 REWSMIKSLSHT--------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TEEEECCCCSBC--------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CcEEECCCCCCC--------cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 755443221111 1122333324788888887654 789999987543211000 0111112233445542
Q ss_pred CCCEEEEEeC--C-----CeEEEEEccCCCC-----CCceeec-CCCCcEEEEEEcCCCCEEEEeeCC--------CcEE
Q 013086 226 QPELLLSCGN--D-----HFARIWDIRRLEA-----GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQD--------NRLR 284 (449)
Q Consensus 226 ~~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~ 284 (449)
.+.+++.|+. + ..+.+||+.+..- -..+... .....-.++....++++++.|+.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 2667788775 2 4688999876541 0111110 011111122233336777777742 4588
Q ss_pred EEeCCCCC
Q 013086 285 IWDSIFGN 292 (449)
Q Consensus 285 vwd~~~~~ 292 (449)
+||+.+.+
T Consensus 630 ~yd~~t~~ 637 (695)
T 2zwa_A 630 SLDPLSET 637 (695)
T ss_dssp EEETTTTE
T ss_pred EEECCCCe
Confidence 88887654
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.94 E-value=1.7 Score=37.97 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=67.1
Q ss_pred ceeeeccCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEE-e----cccCCceeEEEEeeC--CCCeEEEE-e
Q 013086 66 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-G----NIHSCIVNNIRFNPT--NDGTVYAA-S 137 (449)
Q Consensus 66 ~~~~~~h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~-~----~~h~~~v~~~~~~~~--~~~~l~s~-~ 137 (449)
+.++...-..-+.|+|.|+| +++++--..|.|++++..++...... . .........|+|+|+ .+..|+.. +
T Consensus 24 ~~~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eEEeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 34455455667899999999 67766655899999986654432211 1 123456899999984 13344443 2
Q ss_pred --CCCeEEEEeCCCCc--------eeeeee-cCCCCCCCCCcccceeEEEEecCCCEEEEEc
Q 013086 138 --SDGTVSCTDLETGL--------ALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 188 (449)
Q Consensus 138 --~dg~v~iwd~~~~~--------~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 188 (449)
.++.|.-|.+..+. ....+. .+.. . ......|.|.|++.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~----~--~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG----V--IHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC----S--SCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC----C--CccCccccCCCCCCEEEEEC
Confidence 34566666665421 111111 1111 1 11256799999998777644
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.31 E-value=3.4 Score=38.47 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=141.8
Q ss_pred EEEEEcCCCcEEEEeCcCCeeeEEEecc------------------------cCCceeEEEEeeCC----CCeEEEEeC-
Q 013086 88 ILLSGDKKGQVGVWDFYKVSEKIVYGNI------------------------HSCIVNNIRFNPTN----DGTVYAASS- 138 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~~~~~~~~~~~------------------------h~~~v~~~~~~~~~----~~~l~s~~~- 138 (449)
.|.||+..|.|+|+-+.+.+.+..+... ..+......+|..+ +++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3788999999999999988877765310 01112222232211 567777664
Q ss_pred CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEe--cCCCEEEEEcCC-------CeE------------EEEE
Q 013086 139 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNF-------GFL------------YLVD 197 (449)
Q Consensus 139 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d-------g~i------------~i~d 197 (449)
+..|-.-++..-++...+..+... .+..+.+- |+..+++.+++. |.. ...|
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~--------~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQ--------AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCS--------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCc--------CcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 667888888888877777655432 27777775 677788777542 221 1112
Q ss_pred CCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCC---------------eEEEEEcc-----------------
Q 013086 198 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH---------------FARIWDIR----------------- 245 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~----------------- 245 (449)
..+.+...++.. .+........+ ++.+.++.+.+. .+.++++.
T Consensus 224 ~~tm~v~~Qv~v----~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 224 AETMEMAFQVIV----DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp TTTCSEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred CCccEEEEEEEc----CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 222211111100 01122233344 455555544321 34555442
Q ss_pred --------CCCC--CCceeecCCCCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCC------CCCCCCCccceecCCCCc
Q 013086 246 --------RLEA--GSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF------GNLDSPSREIVHSHDFNR 308 (449)
Q Consensus 246 --------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~ 308 (449)
.... ........-......+.++|||+++++++. +.++.++|++. ++.+.+...+.. ...-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a--e~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG--EPEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE--CCBC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe--eccC
Confidence 1000 011111122234556899999999988775 88999999973 222222222221 2223
Q ss_pred cccceeeeeccCCCCCceEEEcceecccCCCCCCcceEEEECCCc----------eEEEEEecCccc-eecee--eecCC
Q 013086 309 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG----------QLVAEVMDPNIT-TISPV--NKLHP 375 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~-~v~~v--~~~~~ 375 (449)
...++...|+++ |.... +---|.+|.-|++... ..+..+.-|-.. ..... ..-.|
T Consensus 377 GlGPlHt~Fd~~---------G~aYT---tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~ 444 (638)
T 3sbq_A 377 GLGPLHTTFDGR---------GNAYT---TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA 444 (638)
T ss_dssp CSCEEEEEECSS---------SEEEE---EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred CCcccEEEECCC---------CceEe---eeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC
Confidence 455677888887 32212 2335678999998654 455555543211 11100 03467
Q ss_pred CCcEEeec
Q 013086 376 RDDVLASG 383 (449)
Q Consensus 376 ~~~~l~s~ 383 (449)
+|++|++.
T Consensus 445 dGk~lv~l 452 (638)
T 3sbq_A 445 DGKWLVAL 452 (638)
T ss_dssp CSCEEEEE
T ss_pred CccEEEEe
Confidence 77777774
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.60 E-value=2.6 Score=41.18 Aligned_cols=156 Identities=10% Similarity=0.050 Sum_probs=79.9
Q ss_pred CCCcEEEEEcCC------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCC--eEEEEeCCCCceeee
Q 013086 84 TNNHILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSL 155 (449)
Q Consensus 84 ~~~~~l~t~~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~ 155 (449)
++ ++++.|+.+ ..+.+||..+..-...-.......-.+++...+ +.+++.|+.++ .+.+||..+......
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 45 677777654 357888887754332211111111122233234 77888887654 699999988765433
Q ss_pred eecCCCCCCCCCcccceeEEEEecC-CCEEEEEcC--C-----CeEEEEECCCCCC-----ccceEEee-cCCCceEEEE
Q 013086 156 MNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADN--F-----GFLYLVDARTNSR-----SGEAILIH-RKGSKVVGLH 221 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~-~~~~~v~~~~ 221 (449)
...... .... ....++.+..+ +..++.|+. + ..+.+||+.+... -....... .......++.
T Consensus 529 ~~~g~~--p~~r--~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 529 TPKDEF--FQNS--LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp CCSSGG--GGSC--CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred cCCCCC--CCcc--cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 210000 0000 11233455555 566677754 2 4689999988762 00111100 1111122222
Q ss_pred EcCCCCCEEEEEeCC--------CeEEEEEccCC
Q 013086 222 CNPIQPELLLSCGND--------HFARIWDIRRL 247 (449)
Q Consensus 222 ~~~~~~~~l~~~~~d--------g~i~iwd~~~~ 247 (449)
+. ++.+++.|+.+ ..|.+||+.+.
T Consensus 605 ~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 605 IT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EE--TTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred eC--CCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 22 36788888743 45889998753
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.50 E-value=6.4 Score=38.85 Aligned_cols=197 Identities=12% Similarity=0.096 Sum_probs=110.3
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 152 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 152 (449)
...|.++....+| . |..|+.+| +..||..+..... ........|.++.. .+ + .|..++.+ -|..+|..+++.
T Consensus 62 ~~~i~~i~~d~~g-~-lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~-g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNT-Y-LYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QG-D-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTT-E-EEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ET-T-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCC-c-EEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cC-C-cEEEEcCC-cceeEeCCCCeE
Confidence 3569998888877 3 55555555 7899987754322 11112335776654 33 4 56666665 588899877654
Q ss_pred eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeec----CCCceEEEEEcCCCCC
Q 013086 153 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR----KGSKVVGLHCNPIQPE 228 (449)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ 228 (449)
....... .. .....|.++....++.+.+ ++.. -+..++..+..... ..... ....|.++...+ ++.
T Consensus 134 ~~~~~~~-~~----l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~-~~~ 203 (758)
T 3ott_A 134 TSFDTRR-NG----LPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDT-TRQ 203 (758)
T ss_dssp EEECHHH-HC----CSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEET-TTT
T ss_pred EEeccCC-CC----cCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE--ecCCCccccccceeEEEEEEC-CCC
Confidence 3221110 00 0012377777777777555 4444 47778876543210 00010 112478887776 566
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 013086 229 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 292 (449)
Q Consensus 229 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (449)
.|..|+. +-|..+|..+.+.. .+..+ ....|.++....+|.+.+ |+. +-+.+++..++.
T Consensus 204 ~lWigt~-~Gl~~~~~~~~~~~-~~~~l-~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPSTGQIK-QTEAF-HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEE-EEEEEEETTTTEEE-EEEEE-EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSC
T ss_pred EEEEEEC-CCCeEEcCCCCeEE-eccCC-CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCc
Confidence 5555654 46888887643221 11111 234588888887777655 444 458888876654
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.11 E-value=4.2 Score=35.71 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=38.6
Q ss_pred ceEEEEEcC------CCCCEEEEEeCCCeEEEEEccCCCCCCceeec-CCCCcEEEEEEcCCCCEEEEe
Q 013086 216 KVVGLHCNP------IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTT 277 (449)
Q Consensus 216 ~v~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 277 (449)
.+..++|.. .++.++++....+.|...++...........+ .....+..+++.|+|.++++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 566777753 14667777767788888887643211111112 223478899999999866653
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.73 E-value=11 Score=37.17 Aligned_cols=193 Identities=10% Similarity=0.031 Sum_probs=104.1
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc----cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI----HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 149 (449)
..|.++....+| .+. .|+.+ -+..++..+.......... ....|.++...++ +..|..|+. +-|..+|..+
T Consensus 146 ~~i~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~-~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDN-QIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT-RQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTC-CEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT-TTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCC-CEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECC-CCEEEEEEC-CCCeEEcCCC
Confidence 458888888777 443 34444 4777887665433221111 1224788877765 565555654 4588889877
Q ss_pred CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEee------cCCCceEEEEEc
Q 013086 150 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH------RKGSKVVGLHCN 223 (449)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~v~~~~~~ 223 (449)
++........ ...|.++....++.+.+ |+. +-+.+++..+.... ..... -....|.++...
T Consensus 221 ~~~~~~~~l~---------~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~--~~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 221 GQIKQTEAFH---------NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ--HIIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp TEEEEEEEEE---------EEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE--EECCCTTCTTSCSCSCEEEEEEC
T ss_pred CeEEeccCCC---------CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE--EEEcCCCCcCcCCcCeEEEEEEc
Confidence 6543221111 12377777777776555 444 45788887664321 00000 012358888877
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCceee-----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 013086 224 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 291 (449)
Q Consensus 224 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (449)
. ++. |..|+..| +.++.... ....... ......|.++.-..+|.+.+ |+.+ -+..++..++
T Consensus 288 ~-~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~ 353 (758)
T 3ott_A 288 Q-EHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAG 353 (758)
T ss_dssp T-TCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTS
T ss_pred C-CCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCC-cceeeccccc
Confidence 6 555 44455566 54443211 1111110 01234688888888887555 4444 4666766543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.07 E-value=3.9 Score=38.10 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=51.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCee-----------eEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.-..+.++|||..++++|-.+.++.|+|+++... .......-.......+|.++ +....+-.-|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~-G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR-GNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS-SEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC-CceEeeeeecceEE
Confidence 3456889999966666677789999999974211 11111224456788899998 75555555799999
Q ss_pred EEeCCC
Q 013086 144 CTDLET 149 (449)
Q Consensus 144 iwd~~~ 149 (449)
.|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999975
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.89 E-value=14 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=33.8
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.+.+++..++ ..++++-+.|+++|+|++.+++++......
T Consensus 237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4666777776 789999999999999999999998887654
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.72 E-value=11 Score=34.51 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=60.1
Q ss_pred eeEEEEecCCC-EEEEEcCCCeEEEEECCCCCCccceEEee---------cCCCceEEEEEcCC---CCCEEEEEeCC--
Q 013086 172 LYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIH---------RKGSKVVGLHCNPI---QPELLLSCGND-- 236 (449)
Q Consensus 172 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~d-- 236 (449)
...|+|.|++. .|+++...|.|++++.........+.... ....-...|+++|. ++.+.++-+.+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 78999999996 56677788999999754321111111110 01235788999982 23444443321
Q ss_pred ----------CeEEEEEccCCC-------CCCceeec---CCCCcEEEEEEcCCCCEEEEeeCC
Q 013086 237 ----------HFARIWDIRRLE-------AGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQD 280 (449)
Q Consensus 237 ----------g~i~iwd~~~~~-------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 280 (449)
..|.-|.+.... ....+... ........|+|.|||.+.++.+..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 134445554210 11122111 122346789999999877776543
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.52 E-value=14 Score=31.45 Aligned_cols=173 Identities=8% Similarity=0.034 Sum_probs=92.1
Q ss_pred CCCCcEEEEEc-CCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCC--------------CeEEEEeC
Q 013086 83 PTNNHILLSGD-KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--------------GTVSCTDL 147 (449)
Q Consensus 83 ~~~~~~l~t~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------------g~v~iwd~ 147 (449)
.++..+.++.. .++.|...+.......... . .. +--++++ ++.|+-+... ..|+..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~-~---~~--~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLS-N---DT--AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEE-E---EE--EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEcc-C---Cc--eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34545555443 2456666666544433222 1 11 2345777 6666666432 36777777
Q ss_pred CCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEc----CCCeEEEEECCCCCCccceEEeecCCCceEEEEEc
Q 013086 148 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 223 (449)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (449)
..++...... -.+..++++++.|+... ....|+..++...... ...... + .+++
T Consensus 96 dg~~~~~l~~--------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~----~lt~~~--~--~~~~ 153 (302)
T 3s25_A 96 NGHGSTVLDP--------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK----KIKNHY--L--FTCN 153 (302)
T ss_dssp TSCCCEEEEC--------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE----EEESSC--C--CCSE
T ss_pred CCCcceEeec--------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE----EEeCCC--c--eEee
Confidence 7665333221 22346788888888775 3456777777643321 222221 2 3456
Q ss_pred CCCCCEEEEEeC-CCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeCC--CcEEEEeCCCC
Q 013086 224 PIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD--NRLRIWDSIFG 291 (449)
Q Consensus 224 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~ 291 (449)
+ .++.|.-.+. ...|...++..... +.+ .. +... ..++|++.+|+-...+ ..|..-++...
T Consensus 154 ~-~g~~iy~t~~g~~~Iy~~~l~g~~~-~~l--~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 154 T-SDRYFYYNNPKNGQLYRYDTASQSE-ALF--YD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp E-ETTEEEEECTTTCCEEEEETTTTEE-EEE--EC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred E-ECCEEEEEeCCCceEEEEECCCCCE-EEE--eC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 6 5666665544 56788888764332 122 11 2222 3456988888776544 35656666543
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.01 E-value=18 Score=32.03 Aligned_cols=146 Identities=8% Similarity=0.082 Sum_probs=84.9
Q ss_pred eEEEEeCCCC--ceeeeeecCCCCCCCCCcccceeEEEEe---cC----CCEEEEEc-CCCeEEEEECCCCCCccce---
Q 013086 141 TVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDIN---PE----KGVVLVAD-NFGFLYLVDARTNSRSGEA--- 207 (449)
Q Consensus 141 ~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~--- 207 (449)
.|.+||+.++ +.++.+.++...... ...+..+++. +. +.++..+. ..+.|.++|+.+++.-...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~---~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK---PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC---GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc---CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 5889999999 899888876543221 2347788877 22 34555544 4678999999876432110
Q ss_pred --------EEeec----CCCceEEEEEcCCC----CCEEEEEeCCC-eEEEEE---ccCCCCCCceeecCCC---CcEEE
Q 013086 208 --------ILIHR----KGSKVVGLHCNPIQ----PELLLSCGNDH-FARIWD---IRRLEAGSSLCDLPHK---RVVNS 264 (449)
Q Consensus 208 --------~~~~~----~~~~v~~~~~~~~~----~~~l~~~~~dg-~i~iwd---~~~~~~~~~~~~~~~~---~~v~~ 264 (449)
..... -...+..|+++| + ++.|.-....+ .++--. ++.......+..++.. ..-..
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred CccccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 00000 012588899998 5 55666555443 333333 2222222233333322 33445
Q ss_pred EEEc-CCCCEEEEeeCCCcEEEEeCCC
Q 013086 265 AYFS-PSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 265 ~~~~-~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
+++. .+|.++++--....|..|+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 6675 5777777777788999999753
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.24 E-value=19 Score=31.78 Aligned_cols=174 Identities=10% Similarity=0.168 Sum_probs=100.0
Q ss_pred CccEEEEEEeCCCCcEEE-EEcC-------------CCcEEEEeCcCC--eeeEEEecc-----cCCceeEEEEee---C
Q 013086 73 SRRVTCLEFHPTNNHILL-SGDK-------------KGQVGVWDFYKV--SEKIVYGNI-----HSCIVNNIRFNP---T 128 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~-t~~~-------------d~~i~vwd~~~~--~~~~~~~~~-----h~~~v~~~~~~~---~ 128 (449)
--.|..+...+.+.-+++ +|-. --.|.+||+.+. +.+..+.-. ....+..+.+.. .
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346888888887732222 1211 125889999998 777665421 234588888882 1
Q ss_pred ---CCCeEEEEe-CCCeEEEEeCCCCceeeeeecCCCCCC-------CC--CcccceeEEEEecC----CCEEEEEcCCC
Q 013086 129 ---NDGTVYAAS-SDGTVSCTDLETGLALSLMNVNPNGWH-------GP--RTWRMLYGMDINPE----KGVVLVADNFG 191 (449)
Q Consensus 129 ---~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~-------~~--~~~~~i~~~~~~~~----~~~l~~~~~dg 191 (449)
++.+++.+. ..+.|.++|+.+++.-+.......... +. .-...+..++++|+ ++.|......+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 123444443 467899999999887665531111100 00 00135888999998 67777765544
Q ss_pred -eEEEEE---CCCCCCccceEEeecCC--CceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 192 -FLYLVD---ARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 192 -~i~i~d---~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
.++-.. ++.......+......+ ..-..+++.+.++.++++--....|..|+..+
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 344433 22222222222222222 34556677643777888888889999999864
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.66 E-value=5.6 Score=40.38 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
..+.+++..++..++++-+.|+++|+|++.+++++.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 356778888888999999999999999999987643
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=81.87 E-value=23 Score=30.13 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=93.4
Q ss_pred EEEeCCCCcEEEEEcCC-------------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEe----CCCe
Q 013086 79 LEFHPTNNHILLSGDKK-------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----SDGT 141 (449)
Q Consensus 79 ~~~~~~~~~~l~t~~~d-------------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~ 141 (449)
--++++|+.+..+...+ ..|+..++......... . .. ...|+++ ++.|+-.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~---~~--~~~~s~~-g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-P---DP--CIYASLI-GNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-C---SC--EEEEEEE-TTEEEEEEESSSSCEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-c---CC--ccEEEEe-CCEEEEEeecCCCCce
Confidence 34578886555554433 46777777766533322 1 11 2367777 77777665 2345
Q ss_pred EEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC-CCeEEEEECCCCCCccceEEeecCCCceEEE
Q 013086 142 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGL 220 (449)
Q Consensus 142 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 220 (449)
|...++..... ..+.... + .+++++++.|+-.+. ...|+..++...... ..... ... .
T Consensus 131 Iy~~~~dGs~~-~~lt~~~-----------~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~----~l~~~--~~~-~ 189 (302)
T 3s25_A 131 LYRIRIDGEEK-KKIKNHY-----------L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA----LFYDC--NCY-K 189 (302)
T ss_dssp EEEEETTSCCC-EEEESSC-----------C--CCSEEETTEEEEECTTTCCEEEEETTTTEEE----EEECS--CEE-E
T ss_pred EEEEECCCCCe-EEEeCCC-----------c--eEeeEECCEEEEEeCCCceEEEEECCCCCEE----EEeCC--Ccc-c
Confidence 55556654332 2232110 1 346778888776655 568888888765422 11222 222 3
Q ss_pred EEcCCCCCEEEEEeCC--CeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEEeeC--CCcEEEEeCC
Q 013086 221 HCNPIQPELLLSCGND--HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ--DNRLRIWDSI 289 (449)
Q Consensus 221 ~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~ 289 (449)
.++| ++.+|+-.... ..|..-++..... .. + ....+ ..|+|++.+|..++. .+.|..-++.
T Consensus 190 ~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~-~~---L-t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 190 PVVL-DDTNVYYMDVNRDNAIVHVNINNPNP-VV---L-TEANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEE-ETTEEEEEEGGGTTEEEEECSSSCCC-EE---C-SCSCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eeee-cCCEEEEEEcCCCcEEEEEECCCCCe-EE---E-eCCCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 3568 67766665543 3566666553221 11 2 12233 347888888876532 3456665654
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=81.48 E-value=28 Score=30.83 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=57.2
Q ss_pred ceeEEEEeeCC-CCeEEEEeCCCeEEEEeCCCCceeeeeecC-CCCC---------CCCCcccceeEEEEecC-CCEEEE
Q 013086 119 IVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMNVN-PNGW---------HGPRTWRMLYGMDINPE-KGVVLV 186 (449)
Q Consensus 119 ~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~---------~~~~~~~~i~~~~~~~~-~~~l~~ 186 (449)
.|.++++.|.+ ...++++...+.|...+ ..++.-..+... ..+. .+......+.++.+.|. ...+++
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 57789998742 45666666566555443 223222222110 0000 00001123778888874 445555
Q ss_pred EcCCCeEEEEECCCCCCccceEEe--ec---------CCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 013086 187 ADNFGFLYLVDARTNSRSGEAILI--HR---------KGSKVVGLHCNPIQPELLLSCGNDHFARIWD 243 (449)
Q Consensus 187 ~~~dg~i~i~d~~~~~~~~~~~~~--~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 243 (449)
+...+.|...+-....- ..... .. ....+.+++++|.++..|.++...+ |...+
T Consensus 195 g~~~ggl~~s~DgG~tW--~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDW--KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp EEETBEEEEESSTTSSC--EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred EECCCCEEEECCCCCCc--eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 55445444432211110 00000 00 0124889999985567777776554 44443
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.67 E-value=30 Score=30.64 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=87.8
Q ss_pred EEEEEcCCCcEEEEeCcC-Ce-eeEEEecccCCceeEEEEeeCCCCeEEEEeCCC----eEEEEeCCCCceeeeeecCCC
Q 013086 88 ILLSGDKKGQVGVWDFYK-VS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG----TVSCTDLETGLALSLMNVNPN 161 (449)
Q Consensus 88 ~l~t~~~d~~i~vwd~~~-~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~ 161 (449)
.|..|...| +.+++... +. -...........|.+|++.|.+...|++++..| .|... ...++.-..+....
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~- 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP- 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC-
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc-
Confidence 466666666 44454332 11 111101123467999999984345555665554 34333 23333222222110
Q ss_pred CCCCCC------cccceeEEEEecC--CCEEEEEcCCCeEEEEECCCCCCccceEEe----------------ecCCCce
Q 013086 162 GWHGPR------TWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILI----------------HRKGSKV 217 (449)
Q Consensus 162 ~~~~~~------~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~v 217 (449)
...... ....|.++++.|. ...+.+++..+.|...+-....-. ..... ......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~-~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWE-PVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCE-ECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeE-ECcCccCCccccccccccccCCCCCCce
Confidence 000000 1124778888872 455666655565555432211110 00000 0112357
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecC--------------CCCcEEEEEEcCC-CCEEEEeeCCCc
Q 013086 218 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--------------HKRVVNSAYFSPS-GSKILTTSQDNR 282 (449)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~-~~~l~~~~~dg~ 282 (449)
.+|.+.|.+...|..+..++.|...+-. ........ ....+.+|.++|. ...|+++...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg----G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDA----GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESST----TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCC----CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 8899988445555555545544443211 11111110 0134889999985 45666666544
Q ss_pred EEEE
Q 013086 283 LRIW 286 (449)
Q Consensus 283 i~vw 286 (449)
|...
T Consensus 255 l~~s 258 (394)
T 3b7f_A 255 IYRM 258 (394)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.89 E-value=39 Score=30.88 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=61.0
Q ss_pred CceeEEEEeeCCCC-eEEEEeCCCeEEEEeCCCCceee-eeecCCCCCCC--CCcccceeEEEEecC---CCEEEEE-cC
Q 013086 118 CIVNNIRFNPTNDG-TVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHG--PRTWRMLYGMDINPE---KGVVLVA-DN 189 (449)
Q Consensus 118 ~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~~~~~---~~~l~~~-~~ 189 (449)
.....|+|.|+ +. .|+++...|.|++++........ ...+......+ ......+..|+++|+ ...|.+. +.
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35688999999 64 56666788999999754321111 11111100000 011234789999996 3333332 21
Q ss_pred --C----------CeEEEEECCCC--C-----CccceEEee--cCCCceEEEEEcCCCCCEEEEEeCC
Q 013086 190 --F----------GFLYLVDARTN--S-----RSGEAILIH--RKGSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 190 --d----------g~i~i~d~~~~--~-----~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
+ ..|.-|.+... . ....++... ........|+|.| ++.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCC
Confidence 1 14555665432 1 011122221 1123578899999 88877776653
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.15 E-value=35 Score=29.43 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=93.3
Q ss_pred CccEEEEEEeC---CCCcEEEEEcCCCcEEEEeCcCCeee-------EEEecccCCceeEEEEeeCCCCeEEEEeCCCeE
Q 013086 73 SRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEK-------IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 142 (449)
Q Consensus 73 ~~~V~~~~~~~---~~~~~l~t~~~d~~i~vwd~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 142 (449)
...|.++..-+ +. .+++..+.+|.|+.-.+...... ..+ . ....+..+..... ...|+..+..|.+
T Consensus 94 ~e~i~~~~~~~~~~~e-~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-k-e~D~lv~~~~~~~-~d~ill~T~~G~~ 169 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDA-PYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-R-DNDELVGAVLCSA-GDDLLLVSANGQS 169 (327)
T ss_dssp TCCEEEEEEESSTTSS-SEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-C-TTCCEEEEEEECT-TCEEEEEETTSEE
T ss_pred CCEEEEEEEeccCCCC-CEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-C-CCCEEEEEEEecC-CCEEEEEECCCeE
Confidence 34455554433 34 57889999999999887552211 111 2 2344555555545 6678888889998
Q ss_pred EEEeCC--CCce-------eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc----e--
Q 013086 143 SCTDLE--TGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE----A-- 207 (449)
Q Consensus 143 ~iwd~~--~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~-- 207 (449)
..+... .-.. ...+.+.. ...|.++...+++..++..+..|.++.-.+........ .
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L~~--------~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRFNI--------DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCCCT--------TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEEECcccccCcCCcCCCCeeeecCCC--------CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 888766 2111 11111111 12366666666677899999999999888654332111 1
Q ss_pred EEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 013086 208 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 246 (449)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 246 (449)
+........+..+.... +...++..+.+|.+.-++...
T Consensus 242 ~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 11112123455554444 455666677788888887653
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.81 E-value=75 Score=33.06 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 013086 261 VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 295 (449)
Q Consensus 261 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 295 (449)
.+.+++..++..++++-+.|+++|+|++.+++++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 44556677788999999999999999999987643
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=73.91 E-value=69 Score=31.23 Aligned_cols=166 Identities=9% Similarity=-0.129 Sum_probs=75.9
Q ss_pred eeEEE-EeeCCCCeE-EEEeCC----CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE------
Q 013086 120 VNNIR-FNPTNDGTV-YAASSD----GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA------ 187 (449)
Q Consensus 120 v~~~~-~~~~~~~~l-~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------ 187 (449)
...+. ++|+ ++++ ++-|.. ..++++|+.+++.+..--.+ ....+.-.......++|..++.++++.
T Consensus 131 ~~g~~~~~~~-~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~-~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQN-PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEP-ITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSS-TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCC-BCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCC-CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCccc-ccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 44455 7888 5554 444433 36999999998876321000 000000000112445776444444432
Q ss_pred ----cCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCC-----EEEEEeC---CCeEEEEEccCCCCCCceee
Q 013086 188 ----DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-----LLLSCGN---DHFARIWDIRRLEAGSSLCD 255 (449)
Q Consensus 188 ----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 255 (449)
+....|+.|.+.+.......+..............++ ++. .+++.+. ...+++.+...... .+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~ 285 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNL--KLQK 285 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSC--EEEE
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCC--cceE
Confidence 1124788888877644332222212221223444555 444 2444332 24566666543111 1111
Q ss_pred cCCCCcEEEEEEcCCCCEEEEee----------CCCcEEEEeCCCC
Q 013086 256 LPHKRVVNSAYFSPSGSKILTTS----------QDNRLRIWDSIFG 291 (449)
Q Consensus 256 ~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~ 291 (449)
+...... .+..+.++.+++... ..+.|.+.++.++
T Consensus 286 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 330 (711)
T 4hvt_A 286 INMPSDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDL 330 (711)
T ss_dssp CCSCTTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGG
T ss_pred eecCCcc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcc
Confidence 2111111 123444665555331 3567888888654
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=72.63 E-value=10 Score=36.54 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCCCCCccceecCCCCccccceeeeeccC--CCCCceEEEcceecccC
Q 013086 260 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK--DPSESLAVIGRYISENY 337 (449)
Q Consensus 260 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~ 337 (449)
..|.++.+ +..++++-+.|..+|+|++.++++...... ....... -.|-.. .+...+.+.+.+++. |
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL---~~~~~~~-----~s~L~~~~~~~~~Lrl~~~~lv~-y 290 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM---VSQSDSD-----PSHFRKVEAVGEYLSLYNNTLVT-L 290 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET---TTTSCCC-----SSCCCCCCSCCCCEEESSSEEEE-E
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc---ccCcccc-----ccccCcccCcchhHhheeeEEEE-E
Confidence 45666555 478999999999999999999886432111 0000000 001111 223444444544442 3
Q ss_pred CCCCCcceEEEECCC
Q 013086 338 NGAALHPIDFIDITT 352 (449)
Q Consensus 338 ~~~~d~~i~iwd~~~ 352 (449)
.-...|..++|.+..
T Consensus 291 ~P~~~G~Fk~~~l~~ 305 (729)
T 3f7f_A 291 LPLENGLFQMGTLLV 305 (729)
T ss_dssp ETTTTCEEEEEEEEC
T ss_pred ecCCCCeEEEEEEEE
Confidence 345567899998853
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.44 E-value=51 Score=29.04 Aligned_cols=155 Identities=8% Similarity=0.064 Sum_probs=89.8
Q ss_pred eeCCCCeEEEEeCCCeEEEEeCCC-------CceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEEC
Q 013086 126 NPTNDGTVYAASSDGTVSCTDLET-------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 198 (449)
Q Consensus 126 ~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 198 (449)
-|+ ..++++.+.+|.|+--.+.. ++-...+..... ..+..+........++..+..|.++-+..
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~--------D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE--------DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC--------CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC--------CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 355 77899999999999865432 112222222222 12666666666677888888888776654
Q ss_pred C---CCCC------ccceEEeecCCCceEEEEEcC--CCCCEEEEEeCCCeEEEEEccCCCCCC----ceeecCCCCcEE
Q 013086 199 R---TNSR------SGEAILIHRKGSKVVGLHCNP--IQPELLLSCGNDHFARIWDIRRLEAGS----SLCDLPHKRVVN 263 (449)
Q Consensus 199 ~---~~~~------~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~ 263 (449)
. .... ...++.. ..+..|.++.... ....+|+.++..|.++...+....... ....+.....+.
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv 153 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALV 153 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEE
T ss_pred HHCcCCCcccCCcCHhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEE
Confidence 3 2211 1111112 2233566654432 135689999999999998875433211 111122344555
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 264 SAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+........|+..+.+|.+..++...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 555555556788888889888887643
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.65 E-value=20 Score=37.37 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=33.1
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 160 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 160 (449)
.+.+++..++ ..++++-+.|+++|+|++.+++++.......
T Consensus 239 ~~vs~~~~~~-~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETT-TTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCC-ccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 3455556666 7899999999999999999999988876543
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.10 E-value=29 Score=33.60 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=31.0
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecC
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 159 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 159 (449)
.|.++.+ + ..++++-+.|.++|+|++.+++++......
T Consensus 223 ~Is~~~~--~-~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 223 VISCKLF--H-ERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EEEEEEE--T-TTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred eEEEecc--C-CcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 3555444 3 679999999999999999999998888773
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=66.58 E-value=1e+02 Score=30.40 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=76.8
Q ss_pred CccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecc------cCCceeEEEEeeCCCCeEEEEeCCCe----E
Q 013086 73 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASSDGT----V 142 (449)
Q Consensus 73 ~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~~dg~----v 142 (449)
.+.|.+|+++|..+..++.+...+.|...+= .+..-..+... ....|.+|++.|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 3579999999976556666766666654442 22211112110 13469999999853455555543211 2
Q ss_pred EEEe-CCCCceeeeeecCCCCCCC-CCcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCCCccceEEe-e---cCCC
Q 013086 143 SCTD-LETGLALSLMNVNPNGWHG-PRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILI-H---RKGS 215 (449)
Q Consensus 143 ~iwd-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~---~~~~ 215 (449)
.||. .+.|+.-..+...... .. ......+..++++|.. ..++++...+.| |-...+-..-..... . ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~-~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPM-GANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCC-CTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCCcceeccCCccc-CccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCC
Confidence 3333 3444433333221110 00 0000125567888753 455556534433 222221111111000 0 1113
Q ss_pred ceEEEEEcCCCCCEEEEEeCC
Q 013086 216 KVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 216 ~v~~~~~~~~~~~~l~~~~~d 236 (449)
.+..+.++|.++..++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 578899998666666666654
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.81 E-value=58 Score=27.19 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=111.2
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEE---eCcCCeeeEEEecccCCceeEEEEeeC-CCCeEEEEeCCCeEEEEeCCC
Q 013086 74 RRVTCLEFHPTNNHILLSGDKKGQVGVW---DFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLET 149 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~t~~~d~~i~vw---d~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~ 149 (449)
+.+..+......+. |+.-+..|.++-- ++....... +. .....|..+.. ++ ...+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~-ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEG-LFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSC-EEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCE-EEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 45665555555434 4444556766543 333222111 22 24556666644 31 267899999999999988754
Q ss_pred Cc----eeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc------eEEeecCCCceEE
Q 013086 150 GL----ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE------AILIHRKGSKVVG 219 (449)
Q Consensus 150 ~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~~~v~~ 219 (449)
-. -...+.+.. ...+..+........++..+..|.+..+....-..... .+.. ..+..|..
T Consensus 100 ~~~~~~G~~~i~lke--------gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~ 170 (276)
T 3no0_A 100 FEYKAQGMPIIKLTE--------GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSG 170 (276)
T ss_dssp TTTCSTTEECSCCCT--------TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEE
T ss_pred hhhhcCCeEEEecCC--------CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEE
Confidence 32 111111111 12355665555667888899999988887643221110 0111 12335666
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEccCCCCCC----ceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE--EeCC
Q 013086 220 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGS----SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI--WDSI 289 (449)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~ 289 (449)
+...+ ++..++..+..|.++...+....... -+..+...+.+..+....+...++..+.+|.+.. +++.
T Consensus 171 ~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 171 LRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 66555 56688888999999998875432211 1111123344554443334445666677777777 7764
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=63.54 E-value=1.1e+02 Score=29.71 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=103.3
Q ss_pred cEEEEE-EeCCCCcEEEEEcCCC----cEEEEeCcCCeeeEEEec-cc-C-----CceeEEEEeeCCCCeEEEE------
Q 013086 75 RVTCLE-FHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGN-IH-S-----CIVNNIRFNPTNDGTVYAA------ 136 (449)
Q Consensus 75 ~V~~~~-~~~~~~~~l~t~~~d~----~i~vwd~~~~~~~~~~~~-~h-~-----~~v~~~~~~~~~~~~l~s~------ 136 (449)
....+. ++|++++++++-|..| .++++|+.+++.+..-.. .- . .....++|..+ +.++++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCC
Confidence 344555 8899976666655544 699999998876532111 00 0 01144588754 4444432
Q ss_pred ----eCCCeEEEEeCCCCceeee--eecCCCCCCCCCcccceeEEEEecCCCE-----EEEEc---CCCeEEEEECCCCC
Q 013086 137 ----SSDGTVSCTDLETGLALSL--MNVNPNGWHGPRTWRMLYGMDINPEKGV-----VLVAD---NFGFLYLVDARTNS 202 (449)
Q Consensus 137 ----~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~~~ 202 (449)
+....|+.|.+-+...... +...... .......++++++ +++.+ ....+++.|.....
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 280 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEY--------IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN 280 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTS--------CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCc--------eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC
Confidence 1135688888876543322 2222111 1234445566652 33332 22456777765322
Q ss_pred CccceEEeecCCCceEEEEEcCCCCCEEEEE----------eCCCeEEEEEccCCCCC----Cce---eecCCCCcEEEE
Q 013086 203 RSGEAILIHRKGSKVVGLHCNPIQPELLLSC----------GNDHFARIWDIRRLEAG----SSL---CDLPHKRVVNSA 265 (449)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~----~~~---~~~~~~~~v~~~ 265 (449)
. ......... .. .+..+. ++.+++.. ...+.|...|+.+.... ... ........+..+
T Consensus 281 ~--~~~~l~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (711)
T 4hvt_A 281 L--KLQKINMPS-DA-TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFI 355 (711)
T ss_dssp C--EEEECCSCT-TC-EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEE
T ss_pred C--cceEeecCC-cc-eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEE
Confidence 1 111111111 11 122333 44444432 24678999998764321 111 122345567888
Q ss_pred EEcCCCCEEEEeeCCCc--EEEEeCCCCC
Q 013086 266 YFSPSGSKILTTSQDNR--LRIWDSIFGN 292 (449)
Q Consensus 266 ~~~~~~~~l~~~~~dg~--i~vwd~~~~~ 292 (449)
.|..+ .++++...++. |.++++.++.
T Consensus 356 ~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 356 STTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred EEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 88865 56666666664 6677766553
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.71 E-value=1.3e+02 Score=29.63 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=76.0
Q ss_pred cCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCC-CEEEEEcCCCe--
Q 013086 116 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGF-- 192 (449)
Q Consensus 116 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~-- 192 (449)
-...|.+|+++|.+...++++...+.|...+ +.|+.-..+...... ..-....+.++++.|.. ..++++.....
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~--~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEA--QDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCG--GGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCc--ccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 3468999999997667788888777665554 234332222111100 00011248899998843 44444432211
Q ss_pred --EEEEECCCCCCccceEEee-------cCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccC-CCCCCceeec----CC
Q 013086 193 --LYLVDARTNSRSGEAILIH-------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEAGSSLCDL----PH 258 (449)
Q Consensus 193 --i~i~d~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~ 258 (449)
-.||-...+-..-...... .....+..++++|.+.+.+..+...+.| |-... ++.-..+... ..
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~ 167 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTN 167 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCST
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCC
Confidence 2233222211111111110 0001345688888556677777644443 32221 1111111100 11
Q ss_pred CCcEEEEEEcC-CCCEEEEeeCC
Q 013086 259 KRVVNSAYFSP-SGSKILTTSQD 280 (449)
Q Consensus 259 ~~~v~~~~~~~-~~~~l~~~~~d 280 (449)
...+..+.++| ++..++++..+
T Consensus 168 ~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 168 GIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCeEEEEECCCCCCEEEEEEcC
Confidence 24578899988 44455555544
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=59.80 E-value=76 Score=26.51 Aligned_cols=182 Identities=14% Similarity=0.037 Sum_probs=93.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceee
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 154 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 154 (449)
.|..++..... .++. . ||.|..|-......+... ..-...|..++... .+.+.-. +|.|..|-....-.+.
T Consensus 64 ~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCC
Confidence 46666665432 3444 4 788888876543222111 11234677777653 3445555 9999999765422111
Q ss_pred eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEe
Q 013086 155 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 234 (449)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (449)
... .....|..++.... ..++-. +|.|+.|-......+... ......|..++... ...++-
T Consensus 135 ~~~---------~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p---~~~~~~v~~i~~G~---~hs~al- 195 (282)
T 3qhy_B 135 VPA---------EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVP---AEAQSGVDDVAGGI---FHSLAL- 195 (282)
T ss_dssp CCG---------GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCC---GGGGSSEEEEEECS---SEEEEE-
T ss_pred CCc---------cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCc---eecCCCeEEEEecC---CEEEEE-
Confidence 100 01112555544332 333334 799999977654333211 11123577777654 333333
Q ss_pred CCCeEEEEEccCCCC-CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 235 NDHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 235 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.+|.|+.|=...... .... .....|..|+-.... .++. . ||.|..|=...
T Consensus 196 ~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 196 KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTC
T ss_pred ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCC
Confidence 599999997654221 1111 122356666654433 3333 3 89999997543
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.73 E-value=96 Score=27.34 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=84.4
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCce--------eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCC
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 190 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 190 (449)
.|..++-. ....+.-..||.|..|-....-. ......- .. .....+..++++......++-..+
T Consensus 54 ~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~----~~~~~~~~v~i~~G~~h~~al~~~ 125 (389)
T 3kci_A 54 RPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLL-ES----IQHVFIKKVAVNSGGKHCLALSSE 125 (389)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEEC-GG----GTTSCEEEEEECTTCSEEEEEETT
T ss_pred ceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEc-cc----ccCCceeEEEECcCCCeEEEEcCC
Confidence 34444432 55666777899999996432111 0000000 00 000124456677777778888889
Q ss_pred CeEEEEECCCCCCcc--------ceEEeec-CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCC-CCC-----Cce--
Q 013086 191 GFLYLVDARTNSRSG--------EAILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EAG-----SSL-- 253 (449)
Q Consensus 191 g~i~i~d~~~~~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~-----~~~-- 253 (449)
|.|+.|-......+. ....... ....|..++.. ....++...+|.|+.|=.... +.. ...
T Consensus 126 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp SCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 999999654321110 0011111 12256666654 356666678999999975431 110 000
Q ss_pred eec--CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 254 CDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 254 ~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
... -....|..++......+.+.-..||.|..|-...
T Consensus 203 ~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred eEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 000 1223466666543335666667899999997643
No 370
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=51.29 E-value=1.1e+02 Score=25.61 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=77.2
Q ss_pred CCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEE
Q 013086 117 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 196 (449)
Q Consensus 117 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 196 (449)
...|..++... .+.+.-. ||.|..|-....-.+.... .....|..++...... ++. . +|.|+.|
T Consensus 23 ~~~i~~ia~G~---~h~~~l~-~G~v~~wG~n~~Gqlg~p~---------~~~~~i~~ia~G~~hs-~~l-~-~G~v~~w 86 (282)
T 3qhy_B 23 QSGVDAIAGGY---FHGLALK-GGKVLGWGANLNGQLTMPA---------ATQSGVDAIAAGNYHS-LAL-K-DGEVIAW 86 (282)
T ss_dssp SSSCCEEEECS---SEEEEEE-TTEEEEEECCSSSTTSCCG---------GGGSCCCEEEECSSEE-EEE-E-TTEEEEE
T ss_pred cCCCcEEEeCC---CeEEEEE-CCEEEEEeCCCCCCCCCCc---------cCCCCEEEEEeCCCEE-EEE-E-CCEEEEe
Confidence 34577777653 2333335 8999999765432221100 0111255555543322 233 4 8999999
Q ss_pred ECCCCCCccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeecCCCCcEEEEEEcCCCCEEEE
Q 013086 197 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 276 (449)
-......+... ......|..++... ...+.-. +|.|+.|-......... .......|..++.... +.+.
T Consensus 87 G~n~~Gqlg~P---~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~--~~~~~~~i~~i~~G~~--~~~~ 155 (282)
T 3qhy_B 87 GGNEDGQTTVP---AEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTV--PAEAQSGVTALDGGVY--TALA 155 (282)
T ss_dssp ECCTTSTTCCC---GGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSC--CGGGGSSEEEEEECSS--EEEE
T ss_pred eCCCCCCCCCC---cccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCC--CccCCCCeEEEEcccC--EEEE
Confidence 87654333211 11123677777754 4444555 99999997654222111 0112345777766433 2333
Q ss_pred eeCCCcEEEEeCCC
Q 013086 277 TSQDNRLRIWDSIF 290 (449)
Q Consensus 277 ~~~dg~i~vwd~~~ 290 (449)
-. ||.|..|-...
T Consensus 156 l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 156 VK-NGGVIAWGDNY 168 (282)
T ss_dssp EE-TTEEEEEECCT
T ss_pred EE-CCEEEEecCCC
Confidence 33 79999997754
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=48.46 E-value=1.3e+02 Score=25.66 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=109.4
Q ss_pred cEEEEEcCCCcEEEEeCcCCeee-------EEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCcee------
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEK-------IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL------ 153 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------ 153 (449)
.++++.+.+|.|+--.+...... ..+...-...+..+..... .+.++..+..|.++-.....-...
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~-~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT-HDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC-CCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 46788889999998876543211 1110112234445544444 667778888888776655321000
Q ss_pred ----eeeecCCCCCCCCCcccceeEEEEec---CCCEEEEEcCCCeEEEEECCCCCCcc----ceEEeecCCCceEEEEE
Q 013086 154 ----SLMNVNPNGWHGPRTWRMLYGMDINP---EKGVVLVADNFGFLYLVDARTNSRSG----EAILIHRKGSKVVGLHC 222 (449)
Q Consensus 154 ----~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~ 222 (449)
..+.+.. ...+.++...+ +..+++..+..|.++...+....... ....... +..+..+..
T Consensus 88 ~~i~~~l~l~~--------~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~ 158 (312)
T 1suu_A 88 QNISELINLGD--------QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEI 158 (312)
T ss_dssp CBGGGTSCCCT--------TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEE
T ss_pred cChhhccCCCC--------CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEE
Confidence 0111111 11244443333 46788899999999998875532211 0111222 345666655
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCC------CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
.. ....++..+.+|.+..+....... +...-.+.....|.++..-.++..|++.+..|..+..++..
T Consensus 159 ~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 159 VF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred eC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 54 556788888999999998754211 11111122345666666655666788888899998888753
No 372
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=48.03 E-value=2.1e+02 Score=27.98 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=58.7
Q ss_pred ceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecC-CCEEEEEcCC-------
Q 013086 119 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNF------- 190 (449)
Q Consensus 119 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d------- 190 (449)
.|..|+++|.+...++++...+.|..++- .++.-..+..... ........+.+++++|. .+.++++...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~--~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQ--MDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCC--GGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccC--cccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 89999999985677888876676666542 2332222211100 00001124889999984 3444444321
Q ss_pred CeEEEEECCCCCCccceEEeecC-------CCceEEEEEcCCCCCEEEEEeCC
Q 013086 191 GFLYLVDARTNSRSGEAILIHRK-------GSKVVGLHCNPIQPELLLSCGND 236 (449)
Q Consensus 191 g~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d 236 (449)
+...||....+-..-........ ...+..|+++|.+++.++++...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12344544332222221111100 01246789999777777777643
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.04 E-value=80 Score=29.89 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=40.3
Q ss_pred eeEEEEeeCCCCeEEEEeCC------------CeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEE
Q 013086 120 VNNIRFNPTNDGTVYAASSD------------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA 187 (449)
Q Consensus 120 v~~~~~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 187 (449)
.-.|+|+|. +.+++.-..+ ..+.+.+..+++..+.+..+.. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g--------aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--------CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT--------CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC--------ccCcCeeECCCCCEEEEE
Confidence 467899998 7755543322 2456667777877766665433 359999999999877764
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.98 E-value=81 Score=29.85 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=37.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCC------------CcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKK------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d------------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
.---|+|++.| ++++.-..+ ..+.+.+..+++....+.......++.++|+|+ ++.|++.
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD-g~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC-CCEEEEE
Confidence 34678999999 455443221 234555656665555443345678999999999 6666554
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=44.25 E-value=1.4e+02 Score=24.88 Aligned_cols=162 Identities=12% Similarity=0.036 Sum_probs=92.4
Q ss_pred CccEEEEEEeCC-CCcEEEEEcCCCcEEEEeCcCCe----eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeC
Q 013086 73 SRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 147 (449)
Q Consensus 73 ~~~V~~~~~~~~-~~~~l~t~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 147 (449)
.+.|..+.. ++ .+.+++..+.+|.|+...+.... -...+.-.-...+..+..... .+.++..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEh
Confidence 455666644 32 22578889999999999876532 011110112344555555544 667888888999888875
Q ss_pred CCCce-------eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCccc----eEEeecCCCc
Q 013086 148 ETGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE----AILIHRKGSK 216 (449)
Q Consensus 148 ~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~ 216 (449)
..-.. ...+.+.. ...+..+...+++..++..+..|.++...+........ .... .....
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~--------~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~ 215 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEK--------NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDT 215 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCT--------TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSC
T ss_pred hhCCCcCCCCCCEEEEccCC--------CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCc
Confidence 42111 11122211 12366666666677899999999999988754322211 1111 23335
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEE--EEccC
Q 013086 217 VVGLHCNPIQPELLLSCGNDHFARI--WDIRR 246 (449)
Q Consensus 217 v~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~ 246 (449)
+..+.... ....++..+.+|.+.. ++...
T Consensus 216 lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 216 LVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 55544433 4456666777888877 87653
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.56 E-value=1.3e+02 Score=28.32 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=40.8
Q ss_pred CceeEEEEeeCCCCeEEEEeC------------CCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEE
Q 013086 118 CIVNNIRFNPTNDGTVYAASS------------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL 185 (449)
Q Consensus 118 ~~v~~~~~~~~~~~~l~s~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 185 (449)
.....|.|.++ +.+.+.... ...|..++..+++....+..+.. ..++.++|+||++.|+
T Consensus 476 nsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~--------aEpnGiafSPD~ktLf 546 (592)
T 4a9v_A 476 NSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--------CEVTGISFSPDQKTLF 546 (592)
T ss_dssp CCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT--------CEEEEEEECTTSSEEE
T ss_pred CCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC--------ccccCCEECCCCCEEE
Confidence 34678999998 766663221 12577777777776665543221 2389999999999887
Q ss_pred EE
Q 013086 186 VA 187 (449)
Q Consensus 186 ~~ 187 (449)
++
T Consensus 547 V~ 548 (592)
T 4a9v_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.91 E-value=1.7e+02 Score=24.85 Aligned_cols=192 Identities=13% Similarity=0.055 Sum_probs=101.7
Q ss_pred cEEEEEcCCCcEEEEeCcCCeeeEE-------EecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC---CC------
Q 013086 87 HILLSGDKKGQVGVWDFYKVSEKIV-------YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE---TG------ 150 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---~~------ 150 (449)
.++++.+.+|.|+--.+........ +.......+..+..... .+.|+..+..|.++-+... ..
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~-~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT-HDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC--------------------CCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC-CCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 4677888899998776654221110 00012233444444444 5667777777876655442 21
Q ss_pred ceee-eeecCCCCCCCCCcccceeEEEEe---cCCCEEEEEcCCCeEEEEECCCCCCccc----eEEeecCCCceEEEEE
Q 013086 151 LALS-LMNVNPNGWHGPRTWRMLYGMDIN---PEKGVVLVADNFGFLYLVDARTNSRSGE----AILIHRKGSKVVGLHC 222 (449)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~v~~~~~ 222 (449)
..+. .+.+. ....|.++... .++.+++..+..|.++...+........ .+..... ..+..+..
T Consensus 83 ~~i~~~l~l~--------~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 83 RPIVNLLPLE--------QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp EEGGGTSCCC--------TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred eEhhhccCCC--------CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 1110 11111 11125554332 3566899999999999998754322111 1111222 35555555
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCC------CceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 013086 223 NPIQPELLLSCGNDHFARIWDIRRLEAG------SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 289 (449)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (449)
.. ....++..+.+|.+..++....... ...-.+.....|.++....++..|++.+..|.++-.++.
T Consensus 154 ~~-~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 154 TS-GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EC-TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred eC-CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 54 4556777888999888887542211 111112344566666555556678888888888887764
No 378
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=39.98 E-value=85 Score=28.92 Aligned_cols=69 Identities=6% Similarity=-0.010 Sum_probs=43.4
Q ss_pred eEEEEEcCC-----CCCEEEEEeCCCeEEEEEccCCC--------CCCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcE
Q 013086 217 VVGLHCNPI-----QPELLLSCGNDHFARIWDIRRLE--------AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 283 (449)
Q Consensus 217 v~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 283 (449)
.++|+.... +-..+..|+.+|.|.-.-+.... ....+.......+|..|.++++..+|.+++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 466665531 22467788899987654332111 11122222346789999999999999999988766
Q ss_pred EE
Q 013086 284 RI 285 (449)
Q Consensus 284 ~v 285 (449)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.68 E-value=1.6e+02 Score=27.68 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=38.7
Q ss_pred ccEEEEEEeCCCCcEEE-EEcC-----------CCcEEEEeCcCCeeeEEEecccCCceeEEEEeeCCCCeEEEE
Q 013086 74 RRVTCLEFHPTNNHILL-SGDK-----------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 136 (449)
Q Consensus 74 ~~V~~~~~~~~~~~~l~-t~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 136 (449)
..-..|.|.++| .+.+ +=.. ...|..++..+++....+.......++.++|+|+ ++.|+++
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD-~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCC-CCEEEEE
Confidence 456789999999 4555 4211 1246666666666544442223467999999999 6666655
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=36.68 E-value=2.2e+02 Score=25.00 Aligned_cols=202 Identities=15% Similarity=0.126 Sum_probs=99.3
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCC-----------eeeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEE
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-----------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 143 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 143 (449)
.|..++... ...+.-..||.|..|-.... ..+..+.......+..++.+.. ..+.+.-..||.|.
T Consensus 54 ~i~~i~~G~---~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G-~~h~~al~~~G~v~ 129 (389)
T 3kci_A 54 RPVQLIGGE---QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSG-GKHCLALSSEGEVY 129 (389)
T ss_dssp CEEEEEEET---TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTT-CSEEEEEETTSCEE
T ss_pred ceEEEEeCC---CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcC-CCeEEEEcCCCCEE
Confidence 355555432 23344456788888854321 1112221112334555666655 66777778899999
Q ss_pred EEeCCCCcee--------eeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCCCCCcc------c--e
Q 013086 144 CTDLETGLAL--------SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG------E--A 207 (449)
Q Consensus 144 iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~--~ 207 (449)
.|-....-.+ .....- .... ...|.. ++......++-..+|.|+.|-......+. . .
T Consensus 130 ~wG~n~~GqLG~g~~~~~~~p~~v-~~l~----~~~i~~--va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 130 SWGEAEDGKLGHGNRSPCDRPRVI-ESLR----GIEVVD--VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEEC-GGGT----TSCEEE--EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred EEeCCCCCcCCCCCCccCcCCeEe-cccC----CCeEEE--EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 9954321100 000000 0000 001333 33445566777788999999754321110 0 0
Q ss_pred EEe-ecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC-C------Ccee-ecC--CCCcEEEEEEcCCCCEEEE
Q 013086 208 ILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-G------SSLC-DLP--HKRVVNSAYFSPSGSKILT 276 (449)
Q Consensus 208 ~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~------~~~~-~~~--~~~~v~~~~~~~~~~~l~~ 276 (449)
... ......|..++... .....++...+|.|+.|-...... . .... ... ....|..|+.. ..+.++
T Consensus 203 ~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~a 279 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVA 279 (389)
T ss_dssp EECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEE
T ss_pred eEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEE
Confidence 011 11223566676543 335666777899999996543111 0 0000 001 12235555553 334455
Q ss_pred eeCCCcEEEEeCCC
Q 013086 277 TSQDNRLRIWDSIF 290 (449)
Q Consensus 277 ~~~dg~i~vwd~~~ 290 (449)
-..+|.|..|=...
T Consensus 280 lt~~G~v~~wG~n~ 293 (389)
T 3kci_A 280 LTKSGAVYTWGKGD 293 (389)
T ss_dssp EETTSCEEEEECCG
T ss_pred EeCCCeEEEEeCCC
Confidence 56789999997643
No 381
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=34.73 E-value=11 Score=20.68 Aligned_cols=19 Identities=37% Similarity=0.885 Sum_probs=16.5
Q ss_pred cccccCCCcceeeecccee
Q 013086 3 PCFLCKMPGHTTMSCPHRV 21 (449)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (449)
-||.|+..||---.||+..
T Consensus 12 ~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 12 QCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SCSSSCCTTCCTTSCSSSC
T ss_pred eeeECCCCCcchhhCcCCc
Confidence 4999999999988999764
No 382
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=33.94 E-value=3.5e+02 Score=26.53 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=75.1
Q ss_pred ccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCCCCceeeeeecCC-CCCCCCC--cccceeEEEEecC-CCEEEEEcCC
Q 013086 115 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPR--TWRMLYGMDINPE-KGVVLVADNF 190 (449)
Q Consensus 115 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~d 190 (449)
+-.+.|.+|.++|.+...++++...|.|...+ +.|+.-..+.... ....+.. ....+.+++++|. ...++++...
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 34668999999998667888887667654443 2333322222111 0000000 1124888999884 3444443321
Q ss_pred -----CeEEEEECCCCCCccceEEeecC-----CCc--eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCCCceeec--
Q 013086 191 -----GFLYLVDARTNSRSGEAILIHRK-----GSK--VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-- 256 (449)
Q Consensus 191 -----g~i~i~d~~~~~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 256 (449)
....||-...+-..-........ ... ...++++|.+...+.++...+.|. -... .+......
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~--~S~D--gG~TW~~~~~ 172 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW--RSTD--RAQTWSRMNQ 172 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE--EESS--TTSSCEECTT
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE--EECC--CCcCcccccc
Confidence 12333333222111111111100 011 146888885566666666554333 2221 11112111
Q ss_pred -C----CCCcEEEEEEcCC-CCEEEEeeCCC
Q 013086 257 -P----HKRVVNSAYFSPS-GSKILTTSQDN 281 (449)
Q Consensus 257 -~----~~~~v~~~~~~~~-~~~l~~~~~dg 281 (449)
. ....+..|.++|. ...++++..++
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1 1234778899884 34455555554
No 383
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=32.54 E-value=3.7e+02 Score=26.37 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=75.5
Q ss_pred cCccEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec-c----------cCCceeEEEEeeCCCCeEEEEeCC-
Q 013086 72 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-I----------HSCIVNNIRFNPTNDGTVYAASSD- 139 (449)
Q Consensus 72 h~~~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~-~----------h~~~v~~~~~~~~~~~~l~s~~~d- 139 (449)
-.+.|.+|+++|.++.++..+...|.|...+= .+..-..+.. . ....+.+|+++|.+.+.++++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999988666666665565443331 2221111111 0 224589999998545555554421
Q ss_pred ----CeEEEEe-CCCCceeeeeecCCCCCCCC-CcccceeEEEEecCC-CEEEEEcCCCeEEEEECCCCC---CccceEE
Q 013086 140 ----GTVSCTD-LETGLALSLMNVNPNGWHGP-RTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNS---RSGEAIL 209 (449)
Q Consensus 140 ----g~v~iwd-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~~~~~~ 209 (449)
....||. .+.|+.-..+..... .... ........++++|.. ..++++...+.|.. ....++ ....+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~-~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVP-MGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSC-CCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcc-cCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 1133343 334443333322110 0000 000012467888753 45555555443332 111111 1100000
Q ss_pred eecCCCceEEEEEcCCCCCEEEEEeCCC
Q 013086 210 IHRKGSKVVGLHCNPIQPELLLSCGNDH 237 (449)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg 237 (449)
.......+..|+++|.+...++++..++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0011124778899985556566665554
No 384
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=30.39 E-value=2.6e+02 Score=23.95 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCceeEEEEeeC--CCCeEEEEeCCCeEEEEeCCCCce-----eeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcC
Q 013086 117 SCIVNNIRFNPT--NDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 189 (449)
Q Consensus 117 ~~~v~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 189 (449)
...|.++...++ ...+++..+.+|.++.-.+..-.. ...+.+... ..+..+........++..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~--------D~lv~~~~~~~~d~ill~T~ 165 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN--------DELVGAVLCSAGDDLLLVSA 165 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT--------CCEEEEEEECTTCEEEEEET
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC--------CEEEEEEEecCCCEEEEEEC
Confidence 445665544331 267899999999999987654221 111222111 22555555566678888899
Q ss_pred CCeEEEEECC--CCCCccc------eEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCCC----Cceeec-
Q 013086 190 FGFLYLVDAR--TNSRSGE------AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG----SSLCDL- 256 (449)
Q Consensus 190 dg~i~i~d~~--~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~- 256 (449)
.|.+..+... .-..... .+.. ..+..|.++...+ .+..++..+..|.++.-.+...... .-+..+
T Consensus 166 ~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~ 243 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM 243 (327)
T ss_dssp TSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC
T ss_pred CCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE
Confidence 9998888776 3221111 0111 2234677777666 5678889999999998876543221 111111
Q ss_pred --CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 013086 257 --PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 257 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
...+.+..+....+...++..+.+|.+.-++...
T Consensus 244 l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 244 YDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1133455554444455666677788887777643
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.58 E-value=2.4e+02 Score=23.05 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=80.7
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeeeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECCC---CCCcc--
Q 013086 131 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART---NSRSG-- 205 (449)
Q Consensus 131 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~-- 205 (449)
..+++.+.+|.|+--....-. ...+.... ...+..+........++..+..|.++-+.... .....
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~-~~~~~lke--------~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~ 73 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID-APGLNYKA--------GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 73 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC-STTSCCCT--------TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEE
T ss_pred CEEEEEeCCCEEEEeeCCcCC-ceeccCCC--------CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeE
Confidence 356677788888765543211 01111111 11254554444555677778888877665432 11111
Q ss_pred --ceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEccCCCC----CCceeecCCCCcEEEEEEc-CCCCEEEEee
Q 013086 206 --EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVNSAYFS-PSGSKILTTS 278 (449)
Q Consensus 206 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 278 (449)
..+.. ..+..|.++.... +..+|+.++..|.++...+..... +.....+...+.+..+... ..+..++..+
T Consensus 74 i~~~i~L-~~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T 151 (256)
T 1zvt_A 74 LTGKLTL-PPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 151 (256)
T ss_dssp GGGTCCC-CTTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEE
T ss_pred eeeeecC-CCCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEc
Confidence 11122 2234677774434 566788889999999998754321 1111112233455555554 3456788888
Q ss_pred CCCcEEEEeCC
Q 013086 279 QDNRLRIWDSI 289 (449)
Q Consensus 279 ~dg~i~vwd~~ 289 (449)
.+|.+..+.+.
T Consensus 152 ~~G~~lrf~~~ 162 (256)
T 1zvt_A 152 QAGRMLMFPVS 162 (256)
T ss_dssp TTSEEEEEEGG
T ss_pred CCCeEEEEEHH
Confidence 89988888874
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.63 E-value=1.5e+02 Score=20.43 Aligned_cols=54 Identities=6% Similarity=-0.024 Sum_probs=29.5
Q ss_pred CCCcceEEEECCCceEEEEEecCccceeceeeecCCCCcEEeecCCCeEEEEcCCC
Q 013086 340 AALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 395 (449)
Q Consensus 340 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~sdg~i~iw~~~~ 395 (449)
..||.+.+|+...+..+..-..........+ .+..+|++++...++.+ +|.-.+
T Consensus 31 q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l-~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 31 RDDCNLVLTKGSKTNIVWESGTSGRGQHCFM-RLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CTTSCEEEEETTTTEEEEECCCTTSCSSCEE-EECTTSCEEEECTTSCE-EEECSC
T ss_pred cCCCEEEEEECCCCEEEEECCcccCCcCEEE-EEeCCCcEEEECCCCCE-EEECCC
Confidence 3556676776533444444322211111223 67888888887665554 787655
No 387
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.53 E-value=2.9e+02 Score=23.59 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=103.8
Q ss_pred cEEEEEcCCCcEEEEeCcCCe---eeEEEecccCCceeEEEEeeCCCCeEEEEeCCCeEEEEeCC---C------Cceee
Q 013086 87 HILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE---T------GLALS 154 (449)
Q Consensus 87 ~~l~t~~~d~~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---~------~~~~~ 154 (449)
.++++.+.+|.|+--.+.... ....-.. -...+..+..... .+.|+..+..|.+.-+... . |..+.
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t-~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNT-KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEET-TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECC-CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 467788888988877654211 0000111 2334444444444 6677777778887665542 1 11111
Q ss_pred e-eecCCCCCCCCCcccceeEEEEec---CCCEEEEEcCCCeEEEEECCCCCCcc--c-e--EEeecCCCceEEEEEcCC
Q 013086 155 L-MNVNPNGWHGPRTWRMLYGMDINP---EKGVVLVADNFGFLYLVDARTNSRSG--E-A--ILIHRKGSKVVGLHCNPI 225 (449)
Q Consensus 155 ~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~--~-~--~~~~~~~~~v~~~~~~~~ 225 (449)
. +.+.. ...|.++...+ ++.+++.++.+|.++...+....... . . +.... +..+..+....
T Consensus 84 ~~i~L~~--------~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~- 153 (323)
T 1wp5_A 84 NIIPIDR--------DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTD- 153 (323)
T ss_dssp GTSCCCT--------TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEEC-
T ss_pred hccCCCC--------CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeC-
Confidence 1 11111 11255443333 25689999999999999875433211 0 1 11122 23555555544
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCC------CceeecCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 013086 226 QPELLLSCGNDHFARIWDIRRLEAG------SSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 226 ~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 290 (449)
....++..+.+|.+..++....... ...-.+.....|.++...+++. .|++.+..|..+..++..
T Consensus 154 ~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 154 GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 5566778888999988887542211 1111122345566665444444 777888888888777643
No 388
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.45 E-value=2.8e+02 Score=23.41 Aligned_cols=152 Identities=9% Similarity=0.088 Sum_probs=83.3
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceee-------eeecCCCCCCCCCcccceeEEEEecCCCEEEEEcCCCeEEEEECC---
Q 013086 130 DGTVYAASSDGTVSCTDLETGLALS-------LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR--- 199 (449)
Q Consensus 130 ~~~l~s~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--- 199 (449)
...+++.+.+|.|+--.+.+-+... .+.... ...+..+........++..+..|.++-+...
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke--------~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp 74 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE--------EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 74 (307)
T ss_dssp CEEEEEEETTSEEEEEECC----------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC--------CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCc
Confidence 5678889999999877665432211 111111 1225555555566778888888887766543
Q ss_pred CCCC--cc----ceEEeecCCCceEEEEEcC--CCCCEEEEEeCCCeEEEEEccCCCCCC--cee--ecCCCCcEEEEEE
Q 013086 200 TNSR--SG----EAILIHRKGSKVVGLHCNP--IQPELLLSCGNDHFARIWDIRRLEAGS--SLC--DLPHKRVVNSAYF 267 (449)
Q Consensus 200 ~~~~--~~----~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~--~~~~~~~v~~~~~ 267 (449)
.... .. ..+.. ..+..|.++...+ .+..+++..+..|.++...+....... -+. .+...+.+..+..
T Consensus 75 ~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~ 153 (307)
T 1zi0_A 75 EATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL 153 (307)
T ss_dssp CCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEE
T ss_pred CCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEE
Confidence 2211 11 11111 2233566654421 145678889999999999875332211 111 1122355655555
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC
Q 013086 268 SPSGSKILTTSQDNRLRIWDSIF 290 (449)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~ 290 (449)
......++..+.+|.+..++...
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEECCCCcEEEEEHHH
Confidence 55556777888889888887753
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.29 E-value=1.4e+02 Score=28.76 Aligned_cols=58 Identities=3% Similarity=0.000 Sum_probs=38.1
Q ss_pred CEEEEEeCCCeEEE-EEccCCCC-------CCceeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 013086 228 ELLLSCGNDHFARI-WDIRRLEA-------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 228 ~~l~~~~~dg~i~i-wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 285 (449)
..+..|+.+|.|.- ........ ...+..+....+|..|.++++..+|.+++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 46778889998753 32221110 112223356778999999999999999998876665
No 390
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.84 E-value=1.5e+02 Score=27.94 Aligned_cols=59 Identities=7% Similarity=-0.033 Sum_probs=38.6
Q ss_pred CEEEEEeCCCeEEEEEccCCC-C--CCc---eeecCCCCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 013086 228 ELLLSCGNDHFARIWDIRRLE-A--GSS---LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 286 (449)
Q Consensus 228 ~~l~~~~~dg~i~iwd~~~~~-~--~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 286 (449)
..+..|+.+|.|.-.-+.... . ... +..+....+|..+.++++...|.+++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 477788899987744333211 1 111 1122356788999999999999999888766653
No 391
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=23.54 E-value=23 Score=21.10 Aligned_cols=18 Identities=39% Similarity=0.938 Sum_probs=16.1
Q ss_pred ccccCCCcceeeecccee
Q 013086 4 CFLCKMPGHTTMSCPHRV 21 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (449)
||.|+..||.--.||...
T Consensus 26 C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 26 CAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp CSSSCCBSSCGGGCTTCC
T ss_pred ceeCCCCCcccccCcCCc
Confidence 999999999999999753
No 392
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=23.48 E-value=1.9e+02 Score=26.82 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=43.5
Q ss_pred ceEEEEEcCCC-CCEEEEEeCCCeEEEEEccCCCC---CCceeecCCCCcEE-EEEEcCCCCEEEEeeCCCcEEE
Q 013086 216 KVVGLHCNPIQ-PELLLSCGNDHFARIWDIRRLEA---GSSLCDLPHKRVVN-SAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 216 ~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~v 285 (449)
..+.|+....+ ...+..|+.+|.|.-.-+..... ...+. .....+|. .|.++++..+|++++..+.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~-v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQS-IQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEE-SSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeec-cCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 35666655422 24666788899887554432111 11222 24556774 8999999999999988877766
No 393
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.37 E-value=84 Score=29.35 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=43.2
Q ss_pred ceEEEEEcCC-CCCEEEEEeCCCeEEEEEccCCCC----CCceeecCCCCcEE-EEEEcCCCCEEEEeeCCCcEEE
Q 013086 216 KVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVN-SAYFSPSGSKILTTSQDNRLRI 285 (449)
Q Consensus 216 ~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~v 285 (449)
..++|+.... +-..+..|+.+|.|.-..+..... ...+.......+|. .|.+++++.+|++++..+.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3555555441 234677888999887665542211 11122223356785 8999999999999987765555
No 394
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.92 E-value=1.8e+02 Score=27.18 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=39.6
Q ss_pred eeEEEEecCC--CEEEEEcCCCeEEEEECCCCCC---ccceEEeecCCCceE-EEEEcCCCCCEEEEEeCCCeEEE
Q 013086 172 LYGMDINPEK--GVVLVADNFGFLYLVDARTNSR---SGEAILIHRKGSKVV-GLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 172 i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
+++++....+ ..++.|+.+|.|.-..+..... ....+.....+.+|. .|.+++ +...|.+++..+.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~-~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI-NQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT-TSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc-CCCeEEEEecccccee
Confidence 4444444433 3667788999776655543211 111222233345775 888988 7888888877655444
No 395
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.60 E-value=2.4e+02 Score=25.97 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=35.7
Q ss_pred CEEEEEcCCCeEEEEECCCCC-------CccceEEeecCCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 013086 182 GVVLVADNFGFLYLVDARTNS-------RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 241 (449)
Q Consensus 182 ~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 241 (449)
..+..|+.+|.|.-.-+.... ...+.+.....+.+|..|.+++ ....|.+++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-CCCEEEEEECCeEEEE
Confidence 356778889976544432211 1111112222345899999999 8888999888776654
No 396
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.53 E-value=5.9e+02 Score=24.71 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEeCcCCeeeEEEec--c----cCCceeEEEEeeCCCCeEEEEeCC-------Ce
Q 013086 75 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN--I----HSCIVNNIRFNPTNDGTVYAASSD-------GT 141 (449)
Q Consensus 75 ~V~~~~~~~~~~~~l~t~~~d~~i~vwd~~~~~~~~~~~~--~----h~~~v~~~~~~~~~~~~l~s~~~d-------g~ 141 (449)
.|..|+++|..+..+..+...+.|..++-....-.. +.. + ....|.+|+++|.+.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~-i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIP-LLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEE-CCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEE-CcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 799999999864556666655655555422222121 211 1 124589999998545566555421 12
Q ss_pred EEEEeCC-CCceeeeeecCCCCCCCC-CcccceeEEEEecCC-CEEEEEcC
Q 013086 142 VSCTDLE-TGLALSLMNVNPNGWHGP-RTWRMLYGMDINPEK-GVVLVADN 189 (449)
Q Consensus 142 v~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~ 189 (449)
..||... .|+.-..+...... ... .....+..++++|.. ..++++..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~-~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKM-GGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCC-CTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCccc-CCCcCcccccceEEECCCCCCEEEEeec
Confidence 3455443 34332332221100 000 001124678888854 56666653
Done!