BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013087
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 349
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 155/287 (54%), Gaps = 21/287 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 148 bits (373), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 154/287 (53%), Gaps = 21/287 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 158/295 (53%), Gaps = 22/295 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ +++ F + KPG ER + Y FVHF+ R
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLG 398
A++A+K +DG ++ +LAKP + + + G+ + + L Y LG
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLG 332
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 148/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFVT+ K A +A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 250
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ +
Sbjct: 251 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMNS 302
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 303 LNGTELEGSCLEVTLAKPVDKEQYS 327
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 158/295 (53%), Gaps = 22/295 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ +++ F + KPG ER + Y FVHF+ R
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLG 398
A++A+K +DG ++ +LAKP + + + G+ + + L Y LG
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLG 332
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 148/258 (57%), Gaps = 13/258 (5%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A +AI+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 104
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V+ LYV
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 224
Query: 299 KNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
+NL T++ L+ F+ G + +V ++ + Y F+HF R A+ AL++
Sbjct: 225 RNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMN 276
Query: 357 KYEIDGQVLDCSLAKPQA 374
IDG ++ +LAKP +
Sbjct: 277 GKVIDGSPIEVTLAKPAS 294
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 19/265 (7%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALK 353
+NL T++ +K F+ KPG ER + Y FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFSKF-----------KPGAVERVKKLRDYAFVHFFHREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 19/260 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D L G++ E R+M + SGE +GYAFV + KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 180 ELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E+ +GK I + RLFIG++P+ ++++ + + K+ GV+ + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+ Y +H A +R+K+ F+L + V+WA P + + +VK LY
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEETMQKVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F + KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 289 SVMNGRLIDGARIEVTLAKP 308
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 24/256 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V F + A++AI+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
ELN L GK I+ + HR +FI N+ + + + G ++
Sbjct: 96 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIV 151
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F++Y N A+ + +K++ L+D V R S
Sbjct: 152 SCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDS 207
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
A++ K +YVKNL + T D LK F +GKIT V+ K G+ +S+ +GFV+F
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENA 265
Query: 346 SSAMKALKNTEKYEID 361
A +A+++ ++ D
Sbjct: 266 DDAARAVESLNGHKFD 281
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 55/340 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + +E A +AIE+LN L
Sbjct: 135 IDHKALHDTFSSF----GNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Query: 187 KGKKIKC-----------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ +A + K +++ N+ + +DD++ A + G + S ++K
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMK 248
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D + +++GF F+ + N A + + ++ KF DD V A ++
Sbjct: 249 DGEG--KSKGFGFVNFENADDAARAVESLNGHKF--DDKEWYVGRAQKKSERETELRVRY 304
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LYVKNL I+ ++LKE+F+ G +T + G + GFV
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFV 363
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPHL 397
FA A +A+ I+ + L ++A+ + D++ + S + A+ P+ P +
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRM 423
Query: 398 GYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLP 437
GG G Q M YG+ A P AM+P
Sbjct: 424 PVYPPGG-----------PGIGQQMFYGQ-APP---AMIP 448
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 18/265 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+ +Y+G + S+ L IG V+ +R+ + + + GYA+V F E +AI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 179 EELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
E+LN +KGK + +Q ++I N+ + + + G ++S
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
++ D +RGF F+ + N + A + + + ++D V+ + S
Sbjct: 156 KVATDENGV--SRGFGFVHFENESDARDAIEAVDG--MLMNDQEVYVALHVSKKDRQSKL 211
Query: 291 SQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
+VKA +YVKN+ ++ +Q+ +ELF +GKIT V+ G+ R +GFV+F + +
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG-FGFVNFEDHA 270
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAK 371
+A KA+ + E GQ L A+
Sbjct: 271 AAAKAVDELNELEFKGQKLYVGRAQ 295
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 33/277 (11%)
Query: 122 VYLGGIPHDASDD-DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+Y+ + H A D+ L + G + ++ ++G ++G+ FV F + A AIE
Sbjct: 128 IYIKNL-HPAIDNKSLHETFSTFGNILSCKVAT-DENGVSRGFGFVHFENESDARDAIEA 185
Query: 181 LNSCEL-------------KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPG 226
++ + K ++ K +AK +++ N+ + +++ + K G
Sbjct: 186 VDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK- 244
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLDDNA 274
+ S L KD + + RGF F+ + +HA A E+ QK+ + K +
Sbjct: 245 ITSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQ 302
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
+ E A Q L+VKNL I ++LKE FA G IT + + G R
Sbjct: 303 ELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSR 362
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV F+ A KA+ + + G+ L ++A+
Sbjct: 363 G-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 70 VEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPH 129
E E + D ++ +D D + + + S KD + ++L + + VY+ I
Sbjct: 173 FENESDARDAIEAVDGMLMNDQEVYVALHVSKKD----RQSKLEEVKAKFTNVYVKNIDQ 228
Query: 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189
+ S ++ G++T +++ G+ +G+ FV F A++A++ELN E KG+
Sbjct: 229 ETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQ 287
Query: 190 KIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGP 225
K+ AQ K+ LF+ N+ + ++ +++ G
Sbjct: 288 KLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGT 347
Query: 226 GVISIELVKDPQNANQNRGFAFIEY 250
+ S ++++D +RGF F+ +
Sbjct: 348 -ITSAKVMRD--ETGNSRGFGFVCF 369
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K + + ++ E+ S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 39/254 (15%)
Query: 138 HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC---- 193
HF + G++ ++M D +KGYAFV F+ + A +AIEE+N LKG K+
Sbjct: 117 HFS-AFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFK 173
Query: 194 ----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
S A ++I N + ++ ++ +K G +S++++ D + +++
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTDS--SGKSK 230
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAAS 291
GF F+ + +H A+ + ++M+ K++ A + E
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
Q LY+KNL I ++L+ F+ G I++V + + GQ + +G + F+ A KA
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG-FGLICFSSPEDATKA 348
Query: 352 LKNTEKYEIDGQVL 365
+ E++G++L
Sbjct: 349 MT-----EMNGRIL 357
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ +R + G SI VK Q Q++GF I +
Sbjct: 293 VKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 MTEMNGRILGSKPLSIALAQ 368
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+A ++ +LYV +L D+T+D L F+ G + + I + + Y +V+F + +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNS-----QKSALNPTYPPHL 397
A KAL I G+ + ++ A + SG N KS N T H
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHF 118
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 220
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +D+T++ +ELF G+IT + + G+ R +GFV+F+
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFST 279
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ + EI Q L A+
Sbjct: 280 HESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ ++ E++ R+ K G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + +M+ + + V A ++
Sbjct: 257 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVDEMNEKEIRTQK--LYVGRAQKKHERE 312
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF +G IT +
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 192 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRE 248
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T E A A++E+N E++ +K+ AQ
Sbjct: 249 LFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQK 307
Query: 199 KH 200
KH
Sbjct: 308 KH 309
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
K G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 274 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AP V+ + A +++ +LYV L +T+ L ELF+ G++ + + +
Sbjct: 29 APEVTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRR 88
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
Y +V++ + +AL++ I G+ C + Q D
Sbjct: 89 SLGYAYVNYNNTADGERALEDLNYTLIKGK--PCRIMWSQRD 128
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 20/261 (7%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + E +A
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+EELN +KGK + +Q + +FI N+ + G ++S
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILS 164
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 165 CKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIPKKERMSK 220
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
++KA +YVKN+ D+T + +ELF HG IT I A+ Q +SR +GFV++
Sbjct: 221 FEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--ARDDQGKSRGFGFVNYIR 278
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A+ + E GQ L
Sbjct: 279 HEAAAVAVDHLNDIEFKGQKL 299
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + ++D R+ K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ +FK V A ++
Sbjct: 256 TSASIARDDQG--KSRGFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVI 325
E + Q LY+KNL D+ ++L+++F G IT KV++
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D +D+D R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + D G+++G+ FV + E A+ A++ LN E KG+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKH 308
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + A++A+ E+N ++GK + + AQ K
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 269 KLDDNAPTVSW--ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
+++ N P S P A A +LYV L +T+ L ELF+ G++ + +
Sbjct: 21 QINTNVPAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVC 80
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD---QKTSGGS 382
+ Y +V++ KAL+ I G+ C + Q D +KT G+
Sbjct: 81 RDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGK--PCRIMWSQRDPALRKTGQGN 137
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + V +R+ + + + GYA+V F E AS+A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN ++ + I+ + K +FI N+ + + + + G ++S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ D +++G+ F+++ A+ + K++ L+D V D +ES
Sbjct: 177 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDKQVFVGHFVRRQDRARSES 232
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A +YVKNLPK+IT D LK+ F +G I+ V+ + G RS +GFV+F +
Sbjct: 233 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEA 291
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++D+
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 71/378 (18%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ L S G + ++ G +KGY FV F +E A AI++LN L
Sbjct: 154 DASIDNKALYETFSSFGTILSCKVAM-DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLN 212
Query: 188 GKKI--------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ + A + +++ N+P+ +D+++K K G IS +V
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGD--ISSAVV 270
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---------RN 284
Q+ N +R F F+ + + A + +KM+ L ++ V A R
Sbjct: 271 MKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEELRRK 327
Query: 285 AESSAAS-----QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E S Q LY+KNL + ++LKE+F+ +G +T + G R +GF
Sbjct: 328 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRG-FGF 386
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----PQADQKTSGGSNSQKSALNPTYPP 395
V ++ A+ A+K I + L +LA+ QA ++ ++P P
Sbjct: 387 VAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSP 446
Query: 396 HLGY------GMVGGAY-----GALGAGYVPAGFAQPMVYGR----------GAAPGGMA 434
G+ G + G + G G G VP +QPM YG GA P
Sbjct: 447 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP---SQPMGYGYQVQFMPGMRPGAGPPNF- 502
Query: 435 MLPMLL-----PDGRIGY 447
M+P L P R+G+
Sbjct: 503 MMPFPLQRQTQPGPRVGF 520
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 18/280 (6%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
D ++ E + + + +Y+G + ++ L IG+V +R+ + S ++ GY
Sbjct: 51 DSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGY 110
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDD 215
A+V + E +AIEELN ++G+ + +Q +FI N+
Sbjct: 111 AYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKA 170
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + G ++S+++ D + Q++ F F+ Y A+ + + ++ L+D
Sbjct: 171 LHDTFSAFGK-ILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVNG--MLLNDREV 225
Query: 276 TVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
V + S ++KA +YVKN+ T+ +ELFA GKIT + + G
Sbjct: 226 YVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG 285
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ + +GFV+F E +A KA++ EI+GQ + A+
Sbjct: 286 KSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 138/338 (40%), Gaps = 54/338 (15%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G++ V++ D G++K + FV + T+E A AIE +N L
Sbjct: 163 HPAIDNKALHDTFSAFGKILSVKVAT-DDLGQSKCFGFVHYETEEAAQAAIESVNGMLLN 221
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+++ +K +++ N+ + E + + G + SI L
Sbjct: 222 DREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-ITSIYLE 280
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWAD 281
KD + +++GF F+ + H A + +++++ + K + +
Sbjct: 281 KDAEG--KSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYE 338
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E + Q L+VKNL + I ++L+E F G IT + G+ + +GFV
Sbjct: 339 AVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKG-FGFVC 397
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
F+ A KA+ + ++G+ L +LA+ + +++ Q A N
Sbjct: 398 FSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQ--LEQQIQARNQMR-------- 447
Query: 402 VGGAYGALGAGYVPAGFAQPMVY---------GRGAAP 430
A AG +P F PM Y GRG AP
Sbjct: 448 ---MQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAP 482
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRH 138
I+ QK Y G + K ++ +E KK E + L G +++ + + L
Sbjct: 313 INGQKIYVGRAQKK---RERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEE 369
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
K G +T ++M D+G++KG+ FV F T E A++AI E+N + GK + + AQ
Sbjct: 370 EFKPFGTITSSKVMV-DDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQR 428
Query: 199 K 199
K
Sbjct: 429 K 429
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 223
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +++T + +++F G+IT + + G+ R +GFV+F+
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 282
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ EI GQ L A+
Sbjct: 283 HDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 148 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 206
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + +++ RK K G + S L
Sbjct: 207 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-ITSATLS 265
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ + H A+ + +M++ + K V A ++
Sbjct: 266 RDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHEREEELRKQ 321
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF+ G IT +
Sbjct: 322 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 195 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRK 251
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T + A A++E+N E+KG+K+ AQ
Sbjct: 252 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 199 KH 200
KH
Sbjct: 311 KH 312
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 51/165 (30%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRH 138
I QK Y G + K ++++E +K E L G +Y+ + D D+ LR
Sbjct: 298 IKGQKLYVGRAQKK---HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 354
Query: 139 FCKSIGEVTEVRIMKGKDS----------------------------------------- 157
G +T ++M+ +
Sbjct: 355 LFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEK 414
Query: 158 ---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 415 KILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 459
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323
+NP V A P S+ +LYV L +T+ L ELF+ G++ +
Sbjct: 22 TNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 81
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
+ + Y +V++ + +AL++ I G+ C + Q D
Sbjct: 82 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGK--PCRIMWSQRD 131
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 223
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +++T + +++F G+IT + + G+ R +GFV+F+
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 282
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ EI GQ L A+
Sbjct: 283 HDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 148 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 206
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + +++ RK K G + S L
Sbjct: 207 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-ITSATLS 265
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ + H A+ + +M++ + K V A ++
Sbjct: 266 RDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHEREEELRKQ 321
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF+ G IT +
Sbjct: 322 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 195 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRK 251
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T + A A++E+N E+KG+K+ AQ
Sbjct: 252 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 199 KH 200
KH
Sbjct: 311 KH 312
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 53/167 (31%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRH 138
I QK Y G + K ++++E +K E L G +Y+ + D D+ LR
Sbjct: 298 IKGQKLYVGRAQKK---HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 354
Query: 139 FCKSIGEVTEVRIMKGKDS----------------------------------------- 157
G +T ++M+ +
Sbjct: 355 LFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKT 414
Query: 158 -----GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 415 EKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 461
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
V A P S++ +LYV L +T+ L ELF+ G++ + + +
Sbjct: 35 VESASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 94
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
Y +V++ + +AL++ I G+ C + Q D
Sbjct: 95 YAYVNYNNTADGERALEDLNYTLIKGK--PCRIMWSQRD 131
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 164 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 219
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL ++I+++ +++F G+IT + + G+ R +GFV+++
Sbjct: 220 KFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRG-FGFVNYST 278
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ E+ GQ L A+
Sbjct: 279 HDSAQAAVDEMNDKEVKGQKLYVGRAQ 305
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 144 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 202
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + E++ R+ K G + S L
Sbjct: 203 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-ITSATLS 261
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ Y H A+ + +M++ + K V A ++
Sbjct: 262 RDQEG--KSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHEREEELRKQ 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+E+FA +G IT +
Sbjct: 318 YEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ + + S+++ R
Sbjct: 191 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNLDQEISEEEFRQ 247
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV + T + A A++E+N E+KG+K+ AQ
Sbjct: 248 MFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306
Query: 199 KH 200
KH
Sbjct: 307 KH 308
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 179
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++N L++ V + P+
Sbjct: 180 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNN--MLLNEKKVYVGYHIPKKDRQ 235
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ + T + ++LFA +G +T + G+ R +GFV+F
Sbjct: 236 SKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRG-FGFVNFT 294
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
A KA++ E GQ L A+
Sbjct: 295 THECAAKAVEELNGKEFRGQDLYVGRAQ 322
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 34/212 (16%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA------ 195
+ G + ++ + ++G +KGY FV + T E A+QAI+ +N+ L KK+
Sbjct: 175 AFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKD 233
Query: 196 AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
Q+K +++ N+ +++ R K G V S L +D + ++RGF F
Sbjct: 234 RQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DVTSSSLARDSEG--KSRGFGF 290
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQV 293
+ + H CA + ++++ +F+ D V A ++ E + Q
Sbjct: 291 VNFTTHECAAKAVEELNGKEFRGQDL--YVGRAQKKHEREEELRKSYEAARLEKANKYQG 348
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
LY+KNL DI D+L+++F+ +G IT +
Sbjct: 349 VNLYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + +Y+ I +A+D++ R G+VT + + + G+++
Sbjct: 231 KKDRQSKFEEMKA---NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSR 286
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A++A+EELN E +G+ + AQ KH
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY 346
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 347 QGVNLYIKNLADDIDDDKLRQMFSEYGP-ITSAKVMRD 383
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 52/178 (29%)
Query: 66 VEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLG 125
VEE +E +D+ G +KH +E K E+ + ++ K+ G +Y+
Sbjct: 303 VEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY--------QGVNLYIK 354
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMK-------------GKDS--------------- 157
+ D DD LR G +T ++M+ GKD
Sbjct: 355 NLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGE 414
Query: 158 ----------------GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + A++A+ E+N ++GK + + AQ K
Sbjct: 415 AEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + +
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRD-TITRRSLGYAYVNYNSTSDG 119
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 120 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 172
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 374 ADQKT 378
D+++
Sbjct: 232 KDRQS 236
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F
Sbjct: 179 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL I D+L++ F+ +G IT + G +GFV F+ A KA+
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + L +LA+ + ++K
Sbjct: 354 NGRIVGTKPLYVALAQRKEERK 375
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 41/280 (14%)
Query: 130 DASDDDLRHF--CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ F S G + ++ +G +KGY FV F +E A AI++LN +
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202
Query: 188 GKKIKCS---AAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ Q + R +++ N+P+ GED++RK K G VIS +V
Sbjct: 203 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--VISSAVV 260
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
Q+ N +R F F+ + A + +KM+ L D+ V A ++
Sbjct: 261 MRDQSGN-SRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSEREEELRRK 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRY 337
SQ LY+KNL + ++LKE+F+ +G +T KV++ P G R +
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ--GMSRG-F 374
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
GFV ++ A++AL I + L +LA+ + D++
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + +D ++ D+++ V + E+ + P + VY+ +P
Sbjct: 182 QFEKEESAQAAIDKLNGMLM--NDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLP 237
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+ +D+LR G ++ +M+ + SG ++ + FV F E A+ A+E++N L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
+ AQ K L++ N+ + ++ +++ ++ G
Sbjct: 297 DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN 252
V S +++ +PQ +RGF F+ Y N
Sbjct: 357 -NVTSSKVMLNPQ--GMSRGFGFVAYSN 381
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL +I D +++F G+IT + + G+ R +GFV+F+
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 284
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A++ EI Q L A+
Sbjct: 285 HESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ RK K G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 262 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+ELF +G IT +
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ + + DD+ R
Sbjct: 197 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRK 253
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T E A A+EE+N E++ +K+ AQ
Sbjct: 254 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQK 312
Query: 199 KH 200
KH
Sbjct: 313 KH 314
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
K G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 429 KPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 119/267 (44%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 167 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 222
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ D+T++ +++F G+IT + G+ R +GFV+++
Sbjct: 223 KFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRG-FGFVNYST 281
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ E+ Q L A+
Sbjct: 282 HESAQAAVDEMHDKEVKTQKLYVGRAQ 308
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ + E++ RK + G +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-I 258
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +DP+ ++RGF F+ Y H A+ + +M + + K V A ++
Sbjct: 259 TSATLSRDPEG--KSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKL--YVGRAQKKHERE 314
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF +G IT +
Sbjct: 315 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + +Y+ I D ++++ R
Sbjct: 194 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRK 250
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + + G+++G+ FV + T E A A++E++ E+K +K+ AQ
Sbjct: 251 IFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQK 309
Query: 199 KH 200
KH
Sbjct: 310 KH 311
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 425 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 186/464 (40%), Gaps = 61/464 (13%)
Query: 19 NPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETED 78
+PTE E + E +DE + + V+ E+++ EV+ + + +E +++D
Sbjct: 4 SPTESEI-LPKESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSN-DEPVQSQD 61
Query: 79 VVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+ A E S +D+ + L ++G + ++ ++
Sbjct: 62 PISPNMASNESGNSENTSNYGSSRDENVYQKTTL----------WMGELEPWVTEAFIQQ 111
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE-------------ELNSCE 185
++G+ +V++++ + +G GY FV F + AS A+ +LN
Sbjct: 112 VWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWAS 171
Query: 186 LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
G + K + +++ +F+G++ N E D+ S +++ DPQ N +RG+
Sbjct: 172 GGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQ-TNVSRGY 230
Query: 246 AFIEYYN-----HACAEYS---------RQKMSNPKFKLDDNAPT--VSWADPRNAESSA 289
F+ + + A AE R ++ PK K +P V + P SA
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSA 290
Query: 290 ASQV--------KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
A V ++V L K ++++ LK LF + G+I V IPP K GFV
Sbjct: 291 AQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQ 344
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
F R SA A+ + Y + + S + Q + + N Q T P +
Sbjct: 345 FVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQ-NPIAAPALNYQSQVSQTTIPATSLFPA 403
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAM---LPMLLPD 442
+ A + Y PA P+ AP GM + P L+PD
Sbjct: 404 MSLPPQAQFSPY-PAVAPSPLALQTRGAPIGMEISIGSPALVPD 446
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 119/268 (44%), Gaps = 17/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 176 LSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 231
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T D + LF +G +T + + + +GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
A KA++ + E GQ L A+
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRAQ 319
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 33/212 (15%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA------ 195
+ G + ++ + ++G +KGY FV + T E ASQAI+ +N L KK+
Sbjct: 171 AFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKD 229
Query: 196 AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
Q+K +++ N+ +D+ R K G V S L +D Q ++RGF F
Sbjct: 230 RQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DVTSSSLARD-QETGKSRGFGF 287
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-------AASQVKA----- 295
+ + +H A + Q+++ +F + V A ++ AA Q KA
Sbjct: 288 VNFTSHEDASKAVQELNEKEFHGQN--LYVGRAQKKHEREEELRKSYEAARQEKASKYQG 345
Query: 296 --LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
LY+KNL ++ ++L++LF+ G IT +
Sbjct: 346 VNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 28/158 (17%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + +Y+ I + +DD+ R + G+VT + + +++G+++
Sbjct: 227 KKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSR 283
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F + E AS+A++ELN E G+ + AQ KH
Sbjct: 284 GFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKY 343
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ ++ +R+ ++ GP + S ++++D
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGP-ITSAKVMRD 380
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 122/268 (45%), Gaps = 19/268 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A+ + + ++ L+D V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKN+ +D T++ ++LF G+IT + A+ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRG-FGFVNFT 285
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+A A++ + GQ L A+
Sbjct: 286 SHDNAAAAVEALNDKDFKGQKLYVGRAQ 313
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ E++ R K G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++ ++RGF F+ + +H A + + +++ FK V A ++
Sbjct: 263 TSATLARDAESG-KSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L+ELF+ +G IT +
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D ++++ R + GE+T + + +SG+++
Sbjct: 221 KKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSR 277
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV F + + A+ A+E LN + KG+K+ AQ KH
Sbjct: 278 GFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKH 316
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 61/168 (36%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E+ + ++ K+ G +Y+ + D D+ LR S
Sbjct: 312 AQKKHEREEELRKQYEAARIEKASKY--------QGVNLYIKNLSDDIDDEKLRELFSSY 363
Query: 144 GEVTEVRIMKG--------------KDS-------------------------------- 157
G +T ++M+ KDS
Sbjct: 364 GTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKK 423
Query: 158 ------GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 424 SEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 33/271 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ IP+ + ++L+ ++ ++RI GKD G KG A+V F ++ A++A+EE
Sbjct: 327 LFVKNIPYSTTVEELQEIFEN---AKDIRIPTGKD-GSNKGIAYVEFSNEDEANKALEEK 382
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++G+ I K + L + N+ + ED +R+ K
Sbjct: 383 QGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK----A 438
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
SI + PQN + +GFAFIE+ + A+ + +N + ++ + + ++ +
Sbjct: 439 TSIRI---PQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTE--IEGRSIRLEFSQGGGPQG 493
Query: 288 SA---ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++Q K L+V+ L +D T++ LKE F G + ++ G + +GFV F+
Sbjct: 494 GGRGGSAQSKTLFVRGLSEDTTEETLKEAF--DGSVNARIVTDRDTGASKG-FGFVDFST 550
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
A A + E EIDG + AKP+ D
Sbjct: 551 AEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 144/323 (44%), Gaps = 44/323 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ +P ++ L+ K G + ++ +D G+++GY FV F ++ A AI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 182 NSCELKGKKIKCSAAQAKH----------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
NS + K+I K L++ N+ + ED +R+ + G ++S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK-IVSLA 231
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSW 279
+ KD RG+AF+ + N A + + ++ KF K +
Sbjct: 232 IAKDENRLC--RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
++ E ++V +YVKN+ +T++ L++ F+ G IT + + G+ + +GF
Sbjct: 290 FKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG-FGF 348
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS----------GGSNSQKSAL 389
V F+ A+ A+K G+ L ++A+ + D+K +S +++
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASV 408
Query: 390 NP-TYPPHLGY-----GMVGGAY 406
NP TY P L Y GMV +Y
Sbjct: 409 NPGTYAP-LYYTNTHPGMVYQSY 430
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 16/269 (5%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + +Y+G + ++ L +T VR+ K SG + Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 177 AIEELNSCELKGKKIK----CSAAQAKH----RLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
AIE+ N+ L GK I+ A A+ +F+ N+P + ++ K G ++
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG-NIV 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ ++RG+ F+++ A + Q +++ + D V +
Sbjct: 140 SCKVA--TLEDGKSRGYGFVQFEQEDAAHAAIQTLNST--IVADKEIYVGKFMKKTDRVK 195
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSS 347
+ LY+KNL D+++D L+E FA GKI + I AK R Y FV+F
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI--AKDENRLCRGYAFVNFDNPED 253
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A +A + + + L A+ +A++
Sbjct: 254 ARRAAETVNGTKFGSKCLYVGRAQKKAER 282
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + ++ ++ +K +E+K A++ S +Y+ + ++++LR G
Sbjct: 276 AQKKAEREQLLREQFKEKHEEQKMIAKV-------SNIYVKNVNVAVTEEELRKHFSQCG 328
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+T ++M + G++KG+ FV F T E A A++ + GK + + AQ K
Sbjct: 329 TITSTKLM-CDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + DA++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 132/331 (39%), Gaps = 44/331 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED ++ K GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA- 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + H A+ + +M+ + K++
Sbjct: 218 LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----------QADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYVP 415
+NP P P GY M A Y P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 424
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+
Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGF 233
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEV 122
E E+ ++ D ++G ++ ++ Y G + KV E + E+ K + G +
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY--QGVNL 296
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 355 GRIVATKPLYVALAQRK 371
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 138/314 (43%), Gaps = 39/314 (12%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------------KCSAAQAKH-RLF 203
G AKGY FV F + E A+ AIE +N L KK+ K A +A ++
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 264
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
I N+ E + + G + S+ LVKD QN ++ RGF F+ Y NH CA+ + ++
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 264 SNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQDR 309
++ ++K V A ++ E Q L++KNL ++ +R
Sbjct: 322 NDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
LK F+ G IT I + G+ + +GFV + A KA+ + + G+ L +L
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 370 AKPQADQKTSGGSNSQ-KSALNPTYPPHLGYGMVGGAYGALG-AGYVPAGFAQP-MVYGR 426
A+ + +++ + Q ++ G+ YGA G Y P G+ P V GR
Sbjct: 439 AQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGR 498
Query: 427 G--AAPGGMAMLPM 438
G PG +PM
Sbjct: 499 GMPMVPGHNGPMPM 512
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 20/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + +Y+G + ++ L SIG V +R+ + + + GYA+V F E +
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVI 228
A++ELN +KG+ + +Q L FI N+ + + G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGK-IL 195
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D +G+ F+ + + A + + ++ L+D V R S
Sbjct: 196 SCKVAVD--ELGNAKGYGFVHFDSVESANAAIEHVNG--MLLNDKKVYVGHHVSRRERQS 251
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFA 343
+KA +Y+KNL +IT+ +LF G+IT + + K ++ R +GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
A KA+ E G+ L
Sbjct: 310 NHECAQKAVDELNDKEYKGKKL 331
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E K ++ K+ G +++ + + D+ L+ +
Sbjct: 336 AQKKHEREEELRKRYEQMKLEKMNKY--------QGVNLFIKNLQDEVDDERLKAEFSAF 387
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T +IM + G++KG+ FV + T E A++A+ E+N L GK + + AQ K
Sbjct: 388 GTITSAKIMT-DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 126/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 44/331 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED +++ K GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA- 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + H A+ + +M+ + K++
Sbjct: 218 LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----------QADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYVP 415
+NP P P GY M A Y P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 424
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+
Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGF 233
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEV 122
E E+ ++ D ++G ++ ++ Y G + KV E + E+ K + G +
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY--QGVNL 296
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 355 GRIVATKPLYVALAQRK 371
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 126/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 143/358 (39%), Gaps = 49/358 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED +++ K GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA- 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + H A+ + +M+ + K++
Sbjct: 218 LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----------QADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYV-PAGFAQ----PMVYGRGAAPGGMAMLP 437
+NP P P GY M A Y P+ AQ P +GA P +P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMP 451
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+
Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGF 233
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEV 122
E E+ ++ D ++G ++ ++ Y G + KV E + E+ K + G +
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY--QGVNL 296
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 355 GRIVATKPLYVALAQRK 371
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 18/262 (6%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L IG+V+ +R+ + + ++ GYA+V F S+AIEEL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 182 NSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N + G+ + +Q L FI N+ + + G ++S ++
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFG-RILSCKVA 178
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
D Q++ F F+ Y AE + + ++ L+D V + S ++
Sbjct: 179 TD--ELGQSKCFGFVHYETAEAAEAAIENVNG--MLLNDREVFVGKHVSKRDRESKFEEM 234
Query: 294 KA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
KA +YVKNL ++ + +E+F G +T V + + G+ R +GFV+F SA+
Sbjct: 235 KANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRG-FGFVNFENHESAL 293
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A+K EIDGQ L A+
Sbjct: 294 NAVKEMNDKEIDGQKLYVGRAQ 315
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPH-GSEVYLGGIPHDASDDDLRHFCK 141
ID QK Y G + K D+ + L L + G +++ + + L K
Sbjct: 304 IDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFK 363
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T R+M D+G++KG+ FV F + E A++AI E+N ++GK + + AQ K
Sbjct: 364 PFGTITSARVMV-DDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRK 420
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 138/355 (38%), Gaps = 60/355 (16%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G + ++ + G++K + FV + T E A AIE +N L
Sbjct: 154 HPAIDNKALHDTFSAFGRILSCKVAT-DELGQSKCFGFVHYETAEAAEAAIENVNGMLLN 212
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+++ +K +++ N+ + GP V S+ L
Sbjct: 213 DREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGP-VTSVHLE 271
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
D + ++RGF F+ + NH A + ++M++ + +D V A +
Sbjct: 272 TDQEG--KSRGFGFVNFENHESALNAVKEMNDKE--IDGQKLYVGRAQKKRERLDELKRL 327
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E + Q L+VKNL I ++L+E F G IT + G+ + +GF
Sbjct: 328 YESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKG-FGF 386
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 399
V F+ A KA+ + I G+ L +LA+ + +++ Q A N
Sbjct: 387 VCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQ--LEQQIQARNQMR------ 438
Query: 400 GMVGGAYGALGAGYVPAGFAQPMVY----------GRGAAPGGMAMLP-MLLPDG 443
A A +P F PM Y GRG A G P M++P G
Sbjct: 439 -----MQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGPFPPNPQMMMPRG 488
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 118/267 (44%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A++ELN +KGK + +Q + +FI N+ + G ++
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 158 SCKVAQD--EFGVSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 213
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ ++ + ++LF G+IT + G+ R +GFV+F+
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFST 272
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A++ E+ Q L A+
Sbjct: 273 HESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +++ RK K G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 250 TSATLSRDSEG--KSRGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ D+L+ELF +G IT +
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 58/184 (31%)
Query: 66 VEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLG 125
VEE ++E ++ + G +KH +E K E+ + ++ K+ G +Y+
Sbjct: 280 VEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKY--------QGVNLYVK 331
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMK-------------GKDS--------------- 157
+ D DD LR G +T ++M+ K+S
Sbjct: 332 NLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEP 391
Query: 158 ----------------------GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195
G++KG+ FV F + + AS+A+ E+N + GK + +
Sbjct: 392 AAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 451
Query: 196 AQAK 199
AQ K
Sbjct: 452 AQRK 455
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIDKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLKE F +G V + G+ R +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + +++G+ + A+ + +++T
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 48/334 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIDKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED +++ + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG-AA 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP----- 282
+S++++ D + ++RGF F+ + H A+ + M+ L+ A V A
Sbjct: 218 LSVKVMTD--DHGKSRGFGFVSFERHEDAQKAVDDMNGKD--LNGKAIFVGRAQKKVERQ 273
Query: 283 ----RNAESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
R E ++ LYVKNL I +RL++ F G IT + G
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKV--MMEGGR 331
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNS--QKSA--- 388
+GFV F+ A KA+ + + L +LA+ + +++ + +N Q+ A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ-RKEERQAHLTNQYMQRMASVR 390
Query: 389 -----LNPTYPPHLGYGMVGGAYGALGAGYVPAG 417
+NP PP Y M A Y P G
Sbjct: 391 VPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPG 424
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 33/204 (16%)
Query: 71 EEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHD 130
E +E E +D ++ D KV K++ AEL A + VY+ D
Sbjct: 146 ETQEAAERAIDKMNGMLLND----RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGED 201
Query: 131 ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190
D+ L+ + G V++M D G+++G+ FV+F E A +A++++N +L GK
Sbjct: 202 MDDERLKEWFGQYGAALSVKVMT-DDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKA 260
Query: 191 IKCSAAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPG 226
I AQ K L++ N+ ++ +RK T G
Sbjct: 261 IFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFG-- 318
Query: 227 VISIELVKDPQNANQNRGFAFIEY 250
SI K +++GF F+ +
Sbjct: 319 --SITSAKVMMEGGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 132/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ + G++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 132/281 (46%), Gaps = 18/281 (6%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
D ++ E + + + +Y+G + ++ L IG+V+ +R+ + S ++ G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGED 214
YA+V + E +AIEELN ++G+ + +Q +FI N+
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNK 154
Query: 215 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274
+ + G ++S ++ D Q++ F F+ Y AE + + ++ L+D
Sbjct: 155 ALHDTFSAFGK-ILSCKVATD--EFGQSKCFGFVHYETAEAAEAAIENVNG--MLLNDRE 209
Query: 275 PTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
V + S ++KA +YVKN+ + +++ ++LF+ GKIT + + +
Sbjct: 210 VFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD 269
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
G+ + +GFV+F + SA+KA++ EI+GQ + A+
Sbjct: 270 GKSKG-FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQ 309
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 139/340 (40%), Gaps = 59/340 (17%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G++ ++ + G++K + FV + T E A AIE +N L
Sbjct: 148 HPAIDNKALHDTFSAFGKILSCKVAT-DEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 188 ------GKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
GK I ++K +++ N+ N+ E+ K + G + SI L
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLE 265
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
KD +++GF F+ + +H A + +++++ + ++ V A +
Sbjct: 266 KD--QDGKSKGFGFVNFEDHESAVKAVEELNDKE--INGQKIYVGRAQKKRERLEELKKQ 321
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E A Q L+VKNL I ++L+E F G IT + + G+ + +GF
Sbjct: 322 YEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG-FGF 380
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 399
V F A KA+ I+G+ L +LA+ + + ++S L
Sbjct: 381 VCFTTPEEATKAITEMNTRMINGKPLYVALAQRK---------DVRRSQLEQQIQARNQM 431
Query: 400 GMVGGAYGALGAGYVPAGFAQPMVY---------GRGAAP 430
M A G L ++P PM Y GRG AP
Sbjct: 432 RMQNAAAGGLPGQFIP-----PMFYGQQGFFPPNGRGNAP 466
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HG 119
E+ E V+ EE D I+ QK Y G + K ++ +E KK E + L G
Sbjct: 281 EDHESAVKAVEELND--KEINGQKIYVGRAQKK---RERLEELKKQYEAVRLEKLAKYQG 335
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++ + + L K G +T ++M ++G++KG+ FV F T E A++AI
Sbjct: 336 VNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMV-DEAGKSKGFGFVCFTTPEEATKAIT 394
Query: 180 ELNSCELKGKKIKCSAAQAK 199
E+N+ + GK + + AQ K
Sbjct: 395 EMNTRMINGKPLYVALAQRK 414
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 118/251 (47%), Gaps = 19/251 (7%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
P S +Y+G + + S+ L +G V+ +R+ + ++ + YA+V + A
Sbjct: 5 FTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADA 64
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPG 226
+A++ LN+ ++GK + +Q L FI N+ + + + G
Sbjct: 65 ERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-N 123
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA- 285
++S ++V D + N ++GF F+ Y A+ + K++ + N V +++
Sbjct: 124 ILSCKVVTD--DGNSSKGFGFVHYETQESADKAIAKVNG----MMINGQKVFVGPFKSSK 177
Query: 286 ESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
E ++VK ++ KNL +D+ D+LKEL +G+IT + I G+ + +GF +F
Sbjct: 178 ERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFE 236
Query: 344 ERSSAMKALKN 354
+A ++N
Sbjct: 237 SAEAAKNVVEN 247
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 33/299 (11%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI H A D F G + +++ D +KG+ FV + T+E A +AI ++N
Sbjct: 108 GIDHKALYDTFSAF----GNILSCKVVT-DDGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 186 LKGKKIKCSAAQA-KHR----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+ G+K+ ++ K R +F N+ + G D +++ + + G + +I ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA----- 289
D + ++ GFA N AE ++ + N K+ P + + E A
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 290 ---ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
Q LY+KN+ I D+L+E+F+ G IT ++ +GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ---KSALNPTYPPHLGYGMV 402
A +A+ I + L +LA+ + ++ Q K+ + PP G G V
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSGPV 395
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ I +D LR G +T +MK + +KG+ FV + + A++A
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 342 VTEMNGRMIGTKPLYVALAQRK 363
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 18/264 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + T +A+E
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN +KG+ + +Q +FI N+ + G ++S +
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG-NILSCK 178
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ +D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 179 VAQDEH--GNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
++KA +YVKN+ ++T + +ELFA G++T + + G+ R +GFV+F +
Sbjct: 235 EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRG-FGFVNFTTHEA 293
Query: 348 AMKALKNTEKYEIDGQVLDCSLAK 371
A +A+ + GQ L A+
Sbjct: 294 AAQAVDELNGKDFRGQDLYVGRAQ 317
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I ++ +D++ R GEVT + + ++ G+++
Sbjct: 226 KKDRQSKFEEMKA---NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSR 281
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A+QA++ELN + +G+ + AQ KH
Sbjct: 282 GFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY 341
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R ++ GP + S ++++D
Sbjct: 342 QGVNLYIKNLGDDVDDDKLRAMFSEYGP-ITSAKVMRD 378
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E ASQAI+ +N L
Sbjct: 156 DAAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLN 214
Query: 188 GKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ Q+K +++ N+ +++ R+ K G V S L
Sbjct: 215 EKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGE-VTSSSLA 273
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ + H A + +++ F+ D V A ++
Sbjct: 274 RDQEG--KSRGFGFVNFTTHEAAAQAVDELNGKDFRGQD--LYVGRAQKKHEREEELRKS 329
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ D+L+ +F+ +G IT +
Sbjct: 330 YEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKV 375
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 49/156 (31%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E+ + ++ K+ G +Y+ + D DD LR
Sbjct: 316 AQKKHEREEELRKSYEAARLEKANKY--------QGVNLYIKNLGDDVDDDKLRAMFSEY 367
Query: 144 GEVTEVRIMKG----------------------------------------KDSGEAKGY 163
G +T ++M+ + G++KG+
Sbjct: 368 GPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGF 427
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV F + A++A+ E+N + GK + + AQ K
Sbjct: 428 GFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 463
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 132/331 (39%), Gaps = 44/331 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED ++ K GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA- 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + H A+ + +M+ + K++
Sbjct: 218 LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----------QADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYVP 415
+NP P P GY M A Y P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 424
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+
Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGF 233
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEV 122
E E+ ++ D ++G ++ ++ Y G + KV E + E+ K + G +
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY--QGVNL 296
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 355 GRIVATKPLYVALAQRK 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,519,471
Number of Sequences: 539616
Number of extensions: 8985633
Number of successful extensions: 169071
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2616
Number of HSP's successfully gapped in prelim test: 2227
Number of HSP's that attempted gapping in prelim test: 75975
Number of HSP's gapped (non-prelim): 40374
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)