Query 013087
Match_columns 449
No_of_seqs 366 out of 3207
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 00:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 5.7E-56 1.2E-60 396.4 29.3 261 112-380 76-338 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 7.5E-46 1.6E-50 359.8 34.9 252 116-376 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4E-46 8.7E-51 356.0 31.7 256 118-375 2-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-41 2.9E-46 343.1 36.5 253 118-375 87-366 (562)
5 KOG0145 RNA-binding protein EL 100.0 2.7E-42 5.8E-47 287.6 23.1 254 118-373 40-358 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-39 5.1E-44 326.8 36.2 247 121-373 2-261 (562)
7 KOG0148 Apoptosis-promoting RN 100.0 2.6E-40 5.6E-45 277.6 23.2 228 117-379 4-244 (321)
8 TIGR01659 sex-lethal sex-letha 100.0 9.4E-37 2E-41 282.8 26.5 174 116-377 104-279 (346)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2E-36 4.4E-41 297.5 30.2 240 118-374 1-352 (481)
10 KOG0127 Nucleolar protein fibr 100.0 7.8E-37 1.7E-41 280.0 23.2 252 119-375 5-380 (678)
11 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-35 2.7E-40 293.2 30.0 249 116-373 86-448 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.6E-34 3.4E-39 289.4 28.6 245 117-372 173-501 (509)
13 KOG0144 RNA-binding protein CU 100.0 2.4E-35 5.2E-40 263.1 18.9 254 119-375 34-506 (510)
14 TIGR01645 half-pint poly-U bin 100.0 6.1E-34 1.3E-38 277.0 29.9 147 117-265 105-268 (612)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.9E-34 1.1E-38 280.6 28.8 240 119-373 96-480 (481)
16 KOG0123 Polyadenylate-binding 100.0 1.2E-29 2.6E-34 236.4 20.7 250 119-377 76-353 (369)
17 KOG0123 Polyadenylate-binding 100.0 6.9E-29 1.5E-33 231.4 22.4 240 120-373 2-246 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 2.7E-28 5.8E-33 213.4 18.5 249 119-371 113-533 (544)
19 KOG0127 Nucleolar protein fibr 100.0 6.9E-28 1.5E-32 221.5 15.4 234 119-355 117-516 (678)
20 TIGR01645 half-pint poly-U bin 100.0 2E-26 4.4E-31 224.6 25.7 174 199-376 107-287 (612)
21 KOG0110 RNA-binding protein (R 100.0 2.5E-27 5.4E-32 225.0 18.3 248 118-374 384-694 (725)
22 KOG0131 Splicing factor 3b, su 99.9 2.7E-27 5.8E-32 188.0 13.0 173 118-377 8-181 (203)
23 KOG0147 Transcriptional coacti 99.9 2.7E-27 5.8E-32 218.9 13.2 246 117-372 177-527 (549)
24 KOG0144 RNA-binding protein CU 99.9 4.2E-27 9E-32 210.6 12.4 173 201-379 36-212 (510)
25 KOG4211 Splicing factor hnRNP- 99.9 7.3E-25 1.6E-29 200.2 25.2 249 115-376 6-361 (510)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.2E-25 6.9E-30 211.9 23.3 170 198-375 2-173 (352)
27 KOG0148 Apoptosis-promoting RN 99.9 1.8E-25 3.9E-30 188.4 18.8 140 119-266 62-223 (321)
28 KOG0109 RNA-binding protein LA 99.9 5.1E-26 1.1E-30 193.6 14.6 155 120-380 3-157 (346)
29 KOG4212 RNA-binding protein hn 99.9 1.1E-24 2.4E-29 195.1 22.3 144 118-265 43-278 (608)
30 TIGR01622 SF-CC1 splicing fact 99.9 3E-24 6.6E-29 212.2 21.3 171 198-373 88-266 (457)
31 KOG0145 RNA-binding protein EL 99.9 1.2E-24 2.6E-29 182.2 13.9 171 198-376 40-212 (360)
32 KOG0117 Heterogeneous nuclear 99.9 3.6E-23 7.8E-28 186.4 21.3 165 198-375 82-250 (506)
33 KOG4205 RNA-binding protein mu 99.9 9.6E-24 2.1E-28 189.6 17.0 178 118-379 5-182 (311)
34 TIGR01648 hnRNP-R-Q heterogene 99.9 3.2E-23 7E-28 202.2 20.2 190 171-374 19-223 (578)
35 KOG0146 RNA-binding protein ET 99.9 7.9E-24 1.7E-28 178.0 11.9 242 117-377 17-369 (371)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.8E-22 1.7E-26 197.9 19.3 168 197-374 173-376 (509)
37 KOG0110 RNA-binding protein (R 99.9 1.8E-21 3.8E-26 185.5 15.2 222 117-371 225-596 (725)
38 KOG1190 Polypyrimidine tract-b 99.8 1E-19 2.2E-24 162.3 18.2 243 117-376 26-376 (492)
39 PLN03134 glycine-rich RNA-bind 99.8 6.2E-20 1.3E-24 149.1 14.9 83 293-375 34-116 (144)
40 KOG0124 Polypyrimidine tract-b 99.8 1.4E-20 3E-25 165.3 10.9 171 200-374 114-291 (544)
41 KOG4206 Spliceosomal protein s 99.8 2.4E-19 5.3E-24 149.1 17.1 207 119-371 9-220 (221)
42 KOG0105 Alternative splicing f 99.8 4.2E-18 9.1E-23 135.8 17.5 173 117-361 4-176 (241)
43 KOG1548 Transcription elongati 99.8 9.9E-18 2.1E-22 146.9 19.1 204 113-373 128-352 (382)
44 KOG0147 Transcriptional coacti 99.8 4.8E-19 1E-23 164.5 8.7 174 199-377 179-362 (549)
45 KOG1365 RNA-binding protein Fu 99.8 7.5E-17 1.6E-21 142.9 19.7 253 118-375 59-364 (508)
46 KOG1190 Polypyrimidine tract-b 99.8 7.9E-17 1.7E-21 144.1 19.8 236 120-372 151-490 (492)
47 KOG0120 Splicing factor U2AF, 99.8 3.3E-17 7.1E-22 154.7 16.9 244 118-372 174-491 (500)
48 PLN03134 glycine-rich RNA-bind 99.7 1.8E-17 4E-22 134.7 11.3 83 117-199 32-114 (144)
49 KOG1456 Heterogeneous nuclear 99.7 4.3E-16 9.3E-21 137.7 19.4 242 115-374 27-364 (494)
50 TIGR01659 sex-lethal sex-letha 99.7 2.2E-16 4.9E-21 147.0 15.1 84 290-373 104-187 (346)
51 KOG1457 RNA binding protein (c 99.7 1.4E-15 3E-20 125.4 14.5 224 117-361 32-274 (284)
52 KOG0106 Alternative splicing f 99.7 2.2E-16 4.8E-21 133.2 7.5 168 120-371 2-169 (216)
53 PF00076 RRM_1: RNA recognitio 99.6 7.2E-16 1.6E-20 110.3 8.5 70 296-366 1-70 (70)
54 KOG0149 Predicted RNA-binding 99.6 2.2E-15 4.8E-20 125.8 11.8 81 294-375 13-93 (247)
55 KOG0122 Translation initiation 99.6 7E-16 1.5E-20 129.1 8.8 82 292-373 188-269 (270)
56 PF00076 RRM_1: RNA recognitio 99.6 1.7E-15 3.6E-20 108.4 8.8 70 122-192 1-70 (70)
57 KOG0114 Predicted RNA-binding 99.6 2.2E-15 4.8E-20 108.5 9.0 78 293-373 18-95 (124)
58 KOG4207 Predicted splicing fac 99.6 1.6E-15 3.4E-20 123.5 9.2 80 293-372 13-92 (256)
59 KOG4211 Splicing factor hnRNP- 99.6 2.1E-14 4.6E-19 132.2 17.1 164 201-374 12-183 (510)
60 KOG0149 Predicted RNA-binding 99.6 1.2E-15 2.6E-20 127.3 7.5 77 120-197 13-89 (247)
61 KOG0121 Nuclear cap-binding pr 99.6 2.3E-15 5E-20 112.9 7.9 80 293-372 36-115 (153)
62 PF14259 RRM_6: RNA recognitio 99.6 3.8E-15 8.2E-20 106.4 8.6 70 296-366 1-70 (70)
63 KOG0125 Ataxin 2-binding prote 99.6 2.7E-15 5.8E-20 130.8 8.5 86 288-375 91-176 (376)
64 PLN03120 nucleic acid binding 99.6 6.4E-15 1.4E-19 127.8 10.5 77 293-373 4-80 (260)
65 KOG0105 Alternative splicing f 99.6 8.1E-15 1.8E-19 117.2 10.0 78 293-373 6-83 (241)
66 KOG0122 Translation initiation 99.6 5.3E-15 1.2E-19 123.9 9.3 82 118-199 188-269 (270)
67 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3E-19 103.4 8.9 70 122-192 1-70 (70)
68 COG0724 RNA-binding proteins ( 99.6 3.4E-14 7.4E-19 131.9 14.1 170 119-354 115-286 (306)
69 KOG0107 Alternative splicing f 99.6 1.2E-14 2.6E-19 115.6 8.6 79 293-376 10-88 (195)
70 KOG1456 Heterogeneous nuclear 99.6 2.2E-12 4.7E-17 114.6 22.6 235 124-374 127-492 (494)
71 KOG0121 Nuclear cap-binding pr 99.5 1.1E-14 2.5E-19 109.2 6.9 81 116-196 33-113 (153)
72 PLN03120 nucleic acid binding 99.5 3.5E-14 7.5E-19 123.3 10.4 76 119-198 4-79 (260)
73 KOG0113 U1 small nuclear ribon 99.5 3.2E-14 7E-19 122.6 9.4 92 282-373 90-181 (335)
74 KOG0126 Predicted RNA-binding 99.5 1.9E-15 4E-20 120.6 1.3 79 293-371 35-113 (219)
75 KOG0126 Predicted RNA-binding 99.5 1.5E-15 3.2E-20 121.2 0.2 80 117-196 33-112 (219)
76 PLN03213 repressor of silencin 99.5 4.4E-14 9.5E-19 129.6 9.4 77 293-373 10-88 (759)
77 KOG0114 Predicted RNA-binding 99.5 7.1E-14 1.5E-18 100.8 8.4 83 114-199 13-95 (124)
78 KOG0107 Alternative splicing f 99.5 4.3E-14 9.2E-19 112.4 7.8 76 118-198 9-84 (195)
79 KOG0125 Ataxin 2-binding prote 99.5 3.8E-14 8.3E-19 123.7 7.8 81 117-199 94-174 (376)
80 KOG4207 Predicted splicing fac 99.5 3.1E-14 6.7E-19 116.1 6.3 79 119-197 13-91 (256)
81 PLN03121 nucleic acid binding 99.5 1.5E-13 3.2E-18 117.2 10.4 77 117-197 3-79 (243)
82 KOG0113 U1 small nuclear ribon 99.5 8.7E-14 1.9E-18 120.0 9.0 80 118-197 100-179 (335)
83 PLN03213 repressor of silencin 99.5 9.2E-14 2E-18 127.5 9.6 78 118-199 9-88 (759)
84 PLN03121 nucleic acid binding 99.5 2E-13 4.4E-18 116.4 10.5 76 293-372 5-80 (243)
85 KOG0111 Cyclophilin-type pepti 99.5 3.5E-14 7.5E-19 116.8 5.5 84 293-376 10-93 (298)
86 smart00362 RRM_2 RNA recogniti 99.5 2.9E-13 6.2E-18 97.0 9.7 72 295-368 1-72 (72)
87 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.5E-18 104.8 6.6 81 117-197 70-150 (170)
88 KOG0131 Splicing factor 3b, su 99.5 1E-13 2.2E-18 111.1 6.1 79 293-371 9-87 (203)
89 smart00360 RRM RNA recognition 99.5 4.6E-13 1E-17 95.6 8.7 71 298-368 1-71 (71)
90 smart00362 RRM_2 RNA recogniti 99.4 1E-12 2.3E-17 94.1 9.7 72 121-194 1-72 (72)
91 KOG0108 mRNA cleavage and poly 99.4 7.3E-13 1.6E-17 125.0 11.2 83 294-376 19-101 (435)
92 KOG0130 RNA-binding protein RB 99.4 4.1E-13 8.8E-18 101.8 7.4 88 288-375 67-154 (170)
93 KOG4212 RNA-binding protein hn 99.4 1.4E-11 3.1E-16 111.6 17.5 173 199-376 44-297 (608)
94 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3.1E-17 88.2 8.4 56 310-370 1-56 (56)
95 cd00590 RRM RRM (RNA recogniti 99.4 2.9E-12 6.3E-17 92.3 9.9 74 295-369 1-74 (74)
96 KOG0116 RasGAP SH3 binding pro 99.4 3E-12 6.4E-17 120.1 12.2 82 294-376 289-370 (419)
97 smart00360 RRM RNA recognition 99.4 2.3E-12 5.1E-17 91.9 8.8 71 124-194 1-71 (71)
98 smart00361 RRM_1 RNA recogniti 99.4 2.6E-12 5.7E-17 91.1 7.9 62 307-368 2-70 (70)
99 KOG4660 Protein Mei2, essentia 99.3 4.9E-12 1.1E-16 118.7 10.5 72 117-193 73-144 (549)
100 KOG0111 Cyclophilin-type pepti 99.3 1.4E-12 2.9E-17 107.5 5.7 83 118-200 9-91 (298)
101 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.5E-16 89.1 10.1 74 121-195 1-74 (74)
102 KOG0108 mRNA cleavage and poly 99.3 3.4E-12 7.4E-17 120.5 8.4 80 120-199 19-98 (435)
103 COG0724 RNA-binding proteins ( 99.3 7.1E-12 1.5E-16 116.3 10.4 80 293-372 115-194 (306)
104 KOG4210 Nuclear localization s 99.3 8.1E-12 1.7E-16 112.8 9.5 181 118-376 87-267 (285)
105 KOG0128 RNA-binding protein SA 99.3 4.6E-13 9.9E-18 131.1 1.5 234 117-377 569-819 (881)
106 KOG0132 RNA polymerase II C-te 99.3 6.9E-11 1.5E-15 114.7 16.0 78 293-376 421-498 (894)
107 KOG0129 Predicted RNA-binding 99.3 8E-11 1.7E-15 109.7 15.3 171 115-354 255-432 (520)
108 KOG0132 RNA polymerase II C-te 99.3 8.5E-11 1.8E-15 114.1 15.3 76 117-198 419-494 (894)
109 KOG0109 RNA-binding protein LA 99.3 7.7E-12 1.7E-16 107.7 6.6 74 294-375 3-76 (346)
110 smart00361 RRM_1 RNA recogniti 99.3 2.8E-11 6.1E-16 85.8 8.2 61 133-193 2-69 (70)
111 PF13893 RRM_5: RNA recognitio 99.2 5.1E-11 1.1E-15 80.5 8.3 56 136-196 1-56 (56)
112 KOG4307 RNA binding protein RB 99.2 5.6E-11 1.2E-15 113.8 11.4 78 118-196 433-511 (944)
113 KOG0415 Predicted peptidyl pro 99.2 7.7E-12 1.7E-16 110.4 5.2 85 117-201 237-321 (479)
114 KOG4307 RNA binding protein RB 99.2 7.5E-11 1.6E-15 112.9 12.1 165 202-370 314-511 (944)
115 KOG0146 RNA-binding protein ET 99.2 1.4E-11 3E-16 104.6 5.3 85 115-199 281-365 (371)
116 KOG4206 Spliceosomal protein s 99.2 6.7E-11 1.5E-15 99.1 8.4 83 294-379 10-96 (221)
117 KOG1365 RNA-binding protein Fu 99.2 3.7E-11 8.1E-16 107.2 6.6 143 119-265 161-346 (508)
118 KOG4454 RNA binding protein (R 99.2 7.2E-12 1.6E-16 103.4 1.3 143 115-361 5-151 (267)
119 KOG0415 Predicted peptidyl pro 99.1 7.9E-11 1.7E-15 104.1 6.3 83 293-375 239-321 (479)
120 KOG0112 Large RNA-binding prot 99.1 5.1E-11 1.1E-15 117.5 4.7 163 116-375 369-533 (975)
121 KOG4208 Nucleolar RNA-binding 99.1 3.3E-10 7.2E-15 93.2 8.3 83 117-199 47-130 (214)
122 KOG0120 Splicing factor U2AF, 99.1 6.8E-10 1.5E-14 105.6 11.5 153 115-268 285-479 (500)
123 KOG4208 Nucleolar RNA-binding 99.1 3.8E-10 8.2E-15 92.9 7.6 80 294-373 50-130 (214)
124 KOG0153 Predicted RNA-binding 99.0 9.1E-10 2E-14 97.5 8.9 76 291-372 226-302 (377)
125 KOG4205 RNA-binding protein mu 99.0 8.7E-10 1.9E-14 99.9 8.4 83 118-201 96-178 (311)
126 KOG0226 RNA-binding proteins [ 99.0 6.1E-10 1.3E-14 94.4 5.3 172 120-374 97-271 (290)
127 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.3E-09 2.8E-14 102.3 7.9 83 115-197 401-483 (940)
128 KOG1457 RNA binding protein (c 99.0 7.1E-09 1.5E-13 86.2 11.0 89 292-380 33-125 (284)
129 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.4E-09 3E-14 102.0 7.1 83 291-373 403-485 (940)
130 PF04059 RRM_2: RNA recognitio 98.9 1.1E-08 2.3E-13 75.9 8.3 81 294-374 2-88 (97)
131 KOG0533 RRM motif-containing p 98.8 6.8E-08 1.5E-12 84.1 11.6 82 294-376 84-165 (243)
132 KOG0128 RNA-binding protein SA 98.8 7.2E-10 1.6E-14 109.2 -1.4 134 118-265 666-799 (881)
133 KOG4676 Splicing factor, argin 98.8 1.4E-09 3E-14 97.7 0.4 211 120-372 8-225 (479)
134 KOG0153 Predicted RNA-binding 98.8 2.8E-08 6E-13 88.3 8.2 75 118-198 227-302 (377)
135 PF04059 RRM_2: RNA recognitio 98.7 9E-08 1.9E-12 71.0 9.1 78 120-197 2-85 (97)
136 KOG4209 Splicing factor RNPS1, 98.7 5.1E-08 1.1E-12 85.3 8.1 82 291-373 99-180 (231)
137 KOG0533 RRM motif-containing p 98.7 9.4E-08 2E-12 83.2 9.0 80 118-198 82-161 (243)
138 KOG4660 Protein Mei2, essentia 98.7 2.3E-08 5.1E-13 94.4 5.2 72 290-366 72-143 (549)
139 KOG0106 Alternative splicing f 98.7 3E-08 6.4E-13 84.3 5.2 74 294-375 2-75 (216)
140 KOG0116 RasGAP SH3 binding pro 98.6 5.8E-08 1.3E-12 91.6 7.2 77 119-196 288-364 (419)
141 KOG3152 TBP-binding protein, a 98.6 2.7E-08 5.9E-13 84.7 4.0 74 118-191 73-158 (278)
142 KOG1548 Transcription elongati 98.6 1.1E-07 2.4E-12 84.5 7.7 81 293-374 134-222 (382)
143 PF11608 Limkain-b1: Limkain b 98.6 2.6E-07 5.6E-12 64.8 8.0 70 294-373 3-77 (90)
144 KOG0226 RNA-binding proteins [ 98.6 3.6E-08 7.9E-13 83.8 4.5 82 116-197 187-268 (290)
145 KOG4454 RNA binding protein (R 98.6 2.1E-08 4.5E-13 83.3 2.8 78 293-372 9-86 (267)
146 KOG2193 IGF-II mRNA-binding pr 98.6 1.6E-08 3.5E-13 91.8 1.2 158 200-375 2-159 (584)
147 KOG4209 Splicing factor RNPS1, 98.6 9.6E-08 2.1E-12 83.6 5.7 80 117-197 99-178 (231)
148 KOG4849 mRNA cleavage factor I 98.5 2.6E-07 5.7E-12 81.9 7.8 78 294-371 81-161 (498)
149 KOG1995 Conserved Zn-finger pr 98.5 2.8E-07 6.1E-12 82.8 7.8 87 290-376 63-157 (351)
150 PF11608 Limkain-b1: Limkain b 98.5 5.3E-07 1.2E-11 63.3 7.2 70 120-199 3-77 (90)
151 KOG0151 Predicted splicing reg 98.5 3.5E-07 7.6E-12 88.6 8.5 86 290-375 171-259 (877)
152 KOG0151 Predicted splicing reg 98.4 7.8E-07 1.7E-11 86.3 7.4 82 116-197 171-255 (877)
153 KOG1855 Predicted RNA-binding 98.3 1.5E-05 3.2E-10 73.3 12.9 93 265-357 203-308 (484)
154 PF08777 RRM_3: RNA binding mo 98.2 2.8E-06 6.1E-11 64.8 5.8 70 294-369 2-76 (105)
155 KOG1995 Conserved Zn-finger pr 98.1 2.8E-06 6.1E-11 76.5 4.6 83 118-200 65-155 (351)
156 PF08777 RRM_3: RNA binding mo 98.1 1E-05 2.2E-10 61.7 6.6 70 119-194 1-75 (105)
157 COG5175 MOT2 Transcriptional r 98.0 1.5E-05 3.3E-10 70.7 6.9 88 120-207 115-212 (480)
158 COG5175 MOT2 Transcriptional r 97.9 2.7E-05 5.9E-10 69.1 7.3 82 292-373 113-203 (480)
159 KOG2314 Translation initiation 97.9 4.3E-05 9.4E-10 72.6 8.3 77 294-371 59-142 (698)
160 KOG4849 mRNA cleavage factor I 97.8 0.00026 5.7E-09 63.3 11.8 77 120-196 81-159 (498)
161 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.5E-05 1.8E-09 48.8 5.5 52 294-352 2-53 (53)
162 KOG4210 Nuclear localization s 97.7 2E-05 4.2E-10 71.7 3.0 80 119-199 184-264 (285)
163 KOG3152 TBP-binding protein, a 97.7 2E-05 4.2E-10 67.6 2.5 71 294-364 75-157 (278)
164 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00034 7.4E-09 52.4 8.3 77 294-372 7-91 (100)
165 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.8E-09 47.9 5.4 52 120-178 2-53 (53)
166 KOG2193 IGF-II mRNA-binding pr 97.6 1.6E-05 3.4E-10 72.8 1.1 137 121-268 3-144 (584)
167 KOG2416 Acinus (induces apopto 97.6 9.3E-05 2E-09 70.9 5.7 80 289-374 440-523 (718)
168 KOG0115 RNA-binding protein p5 97.6 0.00028 6E-09 60.8 7.9 77 294-371 32-112 (275)
169 KOG2416 Acinus (induces apopto 97.5 0.00017 3.6E-09 69.3 6.1 75 118-198 443-521 (718)
170 KOG1996 mRNA splicing factor [ 97.5 0.00026 5.6E-09 61.9 6.7 66 307-372 300-366 (378)
171 PF08952 DUF1866: Domain of un 97.5 0.00047 1E-08 54.8 7.3 57 308-373 51-107 (146)
172 KOG2314 Translation initiation 97.5 0.00049 1.1E-08 65.7 8.4 78 117-195 56-140 (698)
173 KOG2202 U2 snRNP splicing fact 97.4 8.4E-05 1.8E-09 64.0 1.8 64 308-372 83-147 (260)
174 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.001 2.2E-08 49.9 6.9 77 119-197 6-90 (100)
175 PF08952 DUF1866: Domain of un 97.3 0.0015 3.2E-08 52.1 7.6 73 117-198 25-106 (146)
176 KOG1855 Predicted RNA-binding 97.3 0.00028 6.1E-09 65.1 4.0 76 118-193 230-318 (484)
177 KOG0129 Predicted RNA-binding 97.2 0.0016 3.6E-08 61.8 8.4 64 117-180 368-432 (520)
178 KOG4676 Splicing factor, argin 97.0 0.00094 2E-08 61.0 4.8 76 294-370 8-86 (479)
179 KOG2591 c-Mpl binding protein, 96.8 0.012 2.6E-07 56.5 10.3 67 294-367 176-246 (684)
180 KOG1996 mRNA splicing factor [ 96.8 0.0045 9.7E-08 54.5 6.7 65 133-197 300-365 (378)
181 KOG2202 U2 snRNP splicing fact 96.7 0.00095 2.1E-08 57.7 2.0 63 134-197 83-146 (260)
182 PF10309 DUF2414: Protein of u 96.5 0.012 2.6E-07 39.6 6.2 54 294-355 6-62 (62)
183 KOG2318 Uncharacterized conser 96.5 0.022 4.8E-07 55.1 9.9 129 116-279 171-304 (650)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0099 2.1E-07 50.2 6.3 80 294-373 8-98 (176)
185 PF15023 DUF4523: Protein of u 96.3 0.025 5.4E-07 44.5 7.3 72 292-371 85-160 (166)
186 PF08675 RNA_bind: RNA binding 96.2 0.027 5.9E-07 40.0 6.6 59 116-183 6-64 (87)
187 PF10309 DUF2414: Protein of u 96.1 0.036 7.9E-07 37.3 6.6 54 120-181 6-62 (62)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0054 1.2E-07 51.7 3.4 72 118-189 6-83 (176)
189 KOG0112 Large RNA-binding prot 96.1 0.002 4.4E-08 65.1 0.8 79 293-372 372-450 (975)
190 PF08675 RNA_bind: RNA binding 96.0 0.046 1E-06 38.9 7.1 54 294-356 10-63 (87)
191 PF04847 Calcipressin: Calcipr 96.0 0.022 4.8E-07 48.2 6.5 63 306-374 8-72 (184)
192 KOG1924 RhoA GTPase effector D 95.9 0.026 5.7E-07 56.6 7.5 12 170-181 208-219 (1102)
193 KOG0115 RNA-binding protein p5 95.7 0.012 2.6E-07 51.0 3.9 75 120-195 32-110 (275)
194 KOG2135 Proteins containing th 95.7 0.007 1.5E-07 57.0 2.5 74 294-374 373-447 (526)
195 PF11767 SET_assoc: Histone ly 95.6 0.054 1.2E-06 37.1 6.0 55 304-367 11-65 (66)
196 KOG2068 MOT2 transcription fac 95.4 0.0075 1.6E-07 54.6 1.6 81 294-374 78-164 (327)
197 PF07576 BRAP2: BRCA1-associat 95.4 0.13 2.9E-06 39.4 8.2 68 119-188 12-81 (110)
198 KOG2068 MOT2 transcription fac 95.0 0.011 2.4E-07 53.5 1.5 81 119-199 77-163 (327)
199 PF07576 BRAP2: BRCA1-associat 95.0 0.25 5.3E-06 38.0 8.6 67 294-362 14-81 (110)
200 KOG0804 Cytoplasmic Zn-finger 94.7 0.089 1.9E-06 49.6 6.5 71 116-188 71-142 (493)
201 KOG4285 Mitotic phosphoprotein 94.7 0.079 1.7E-06 47.2 5.8 73 294-374 198-271 (350)
202 KOG2253 U1 snRNP complex, subu 94.4 0.037 8E-07 54.6 3.6 74 288-370 35-108 (668)
203 KOG4285 Mitotic phosphoprotein 94.1 0.15 3.3E-06 45.4 6.4 71 120-198 198-269 (350)
204 KOG2135 Proteins containing th 94.1 0.034 7.5E-07 52.5 2.5 76 118-200 371-447 (526)
205 PF04931 DNA_pol_phi: DNA poly 94.0 0.026 5.5E-07 59.9 1.8 7 136-142 741-747 (784)
206 KOG0921 Dosage compensation co 93.8 0.4 8.7E-06 49.6 9.4 12 240-251 899-910 (1282)
207 KOG4574 RNA-binding protein (c 93.8 0.088 1.9E-06 53.5 4.7 78 295-378 300-379 (1007)
208 PF15023 DUF4523: Protein of u 93.7 0.54 1.2E-05 37.2 7.9 73 117-197 84-160 (166)
209 KOG1999 RNA polymerase II tran 93.6 0.32 6.9E-06 50.5 8.5 29 159-187 208-236 (1024)
210 PF03880 DbpA: DbpA RNA bindin 93.6 0.31 6.8E-06 34.5 6.2 59 303-370 11-74 (74)
211 KOG0804 Cytoplasmic Zn-finger 93.6 0.26 5.7E-06 46.5 7.2 68 293-362 74-142 (493)
212 PF04847 Calcipressin: Calcipr 93.5 0.22 4.8E-06 42.2 6.1 59 133-197 9-69 (184)
213 KOG2591 c-Mpl binding protein, 93.2 0.14 3.1E-06 49.5 5.0 70 117-193 173-246 (684)
214 PF04147 Nop14: Nop14-like fam 92.5 0.12 2.6E-06 55.0 3.9 21 122-144 419-439 (840)
215 KOG4574 RNA-binding protein (c 91.5 0.13 2.8E-06 52.3 2.6 71 121-197 300-372 (1007)
216 PF03880 DbpA: DbpA RNA bindin 91.4 1.2 2.5E-05 31.6 6.8 59 129-196 11-74 (74)
217 PRK11634 ATP-dependent RNA hel 91.2 1.8 3.9E-05 44.8 10.6 62 303-373 497-563 (629)
218 KOG4483 Uncharacterized conser 90.6 0.35 7.5E-06 44.9 4.2 55 118-179 390-445 (528)
219 PF10567 Nab6_mRNP_bdg: RNA-re 90.3 14 0.0003 33.5 17.3 61 118-178 14-81 (309)
220 PF07292 NID: Nmi/IFP 35 domai 89.4 1.5 3.2E-05 32.1 5.9 55 164-219 1-72 (88)
221 KOG2318 Uncharacterized conser 89.4 1.5 3.3E-05 43.0 7.5 79 293-371 174-306 (650)
222 PF05285 SDA1: SDA1; InterPro 89.3 0.2 4.4E-06 46.9 1.7 6 132-137 191-196 (324)
223 PF11767 SET_assoc: Histone ly 88.7 2 4.4E-05 29.5 5.8 55 130-193 11-65 (66)
224 KOG2253 U1 snRNP complex, subu 88.3 0.32 7E-06 48.3 2.4 70 117-195 38-107 (668)
225 KOG2236 Uncharacterized conser 87.6 10 0.00022 36.5 11.5 14 244-257 260-273 (483)
226 KOG4019 Calcineurin-mediated s 86.1 0.93 2E-05 37.5 3.5 77 294-376 11-93 (193)
227 KOG1999 RNA polymerase II tran 82.8 12 0.00026 39.6 10.4 17 300-316 446-462 (1024)
228 PF11081 DUF2890: Protein of u 82.4 0.81 1.8E-05 38.3 1.7 10 1-10 1-10 (187)
229 KOG4410 5-formyltetrahydrofola 81.5 3.4 7.5E-05 36.7 5.3 48 119-172 330-378 (396)
230 KOG2141 Protein involved in hi 81.0 0.63 1.4E-05 46.9 0.8 26 337-362 623-648 (822)
231 COG4371 Predicted membrane pro 80.0 4 8.6E-05 35.7 5.1 14 410-423 80-93 (334)
232 KOG2038 CAATT-binding transcri 79.9 1.1 2.5E-05 45.5 2.1 13 124-136 960-972 (988)
233 PF10567 Nab6_mRNP_bdg: RNA-re 79.1 4.4 9.5E-05 36.5 5.2 83 292-374 14-109 (309)
234 KOG2295 C2H2 Zn-finger protein 77.6 0.43 9.2E-06 46.4 -1.5 73 118-190 230-302 (648)
235 KOG4410 5-formyltetrahydrofola 77.2 9.4 0.0002 34.1 6.6 48 293-346 330-378 (396)
236 PF02724 CDC45: CDC45-like pro 75.7 1.6 3.5E-05 44.9 1.9 7 363-369 544-550 (622)
237 COG5638 Uncharacterized conser 74.2 31 0.00067 32.7 9.4 39 117-155 144-187 (622)
238 KOG2891 Surface glycoprotein [ 72.9 1.4 3.1E-05 38.9 0.6 69 118-186 148-247 (445)
239 KOG0262 RNA polymerase I, larg 72.2 12 0.00026 40.7 7.0 19 124-142 1446-1464(1640)
240 PF14111 DUF4283: Domain of un 69.5 11 0.00024 30.7 5.3 36 294-329 105-141 (153)
241 KOG2891 Surface glycoprotein [ 69.3 6 0.00013 35.1 3.6 80 293-372 149-267 (445)
242 KOG0699 Serine/threonine prote 68.8 3.1 6.6E-05 38.6 1.8 6 121-126 343-348 (542)
243 KOG4365 Uncharacterized conser 68.4 0.81 1.8E-05 43.1 -1.9 79 294-373 4-82 (572)
244 PF07292 NID: Nmi/IFP 35 domai 68.4 4.2 9.1E-05 29.7 2.1 68 246-314 1-73 (88)
245 KOG2295 C2H2 Zn-finger protein 62.8 1.5 3.2E-05 42.8 -1.4 75 293-367 231-305 (648)
246 KOG4019 Calcineurin-mediated s 62.7 6.6 0.00014 32.7 2.4 76 119-200 10-91 (193)
247 KOG2897 DNA-binding protein YL 61.4 1.9 4.2E-05 40.0 -0.9 10 2-11 8-17 (390)
248 smart00596 PRE_C2HC PRE_C2HC d 61.3 20 0.00043 24.8 4.1 61 308-371 2-63 (69)
249 KOG0262 RNA polymerase I, larg 60.8 6.7 0.00015 42.5 2.7 12 308-319 1540-1551(1640)
250 PF07530 PRE_C2HC: Associated 59.8 28 0.0006 24.1 4.8 63 308-373 2-65 (68)
251 KOG0650 WD40 repeat nucleolar 58.9 10 0.00022 37.7 3.4 13 120-132 119-131 (733)
252 PF07530 PRE_C2HC: Associated 58.6 24 0.00052 24.4 4.3 63 134-199 2-65 (68)
253 KOG4213 RNA-binding protein La 58.2 13 0.00028 30.9 3.4 56 120-179 112-168 (205)
254 PF15513 DUF4651: Domain of un 58.0 26 0.00057 23.6 4.2 20 308-327 9-28 (62)
255 KOG2141 Protein involved in hi 57.9 11 0.00023 38.6 3.4 12 301-312 552-563 (822)
256 KOG1295 Nonsense-mediated deca 57.8 12 0.00026 35.2 3.5 70 118-187 6-78 (376)
257 smart00596 PRE_C2HC PRE_C2HC d 57.7 21 0.00046 24.6 3.8 63 134-199 2-65 (69)
258 TIGR03636 L23_arch archaeal ri 57.3 38 0.00082 24.1 5.2 56 296-354 16-73 (77)
259 PRK14548 50S ribosomal protein 56.7 35 0.00076 24.7 5.1 54 298-354 25-80 (84)
260 PF02714 DUF221: Domain of unk 55.8 22 0.00047 33.4 5.1 56 164-221 1-56 (325)
261 PF03468 XS: XS domain; Inter 55.3 15 0.00032 28.6 3.2 51 121-174 10-69 (116)
262 KOG3875 Peroxisomal biogenesis 54.8 49 0.0011 30.3 6.6 8 441-448 103-110 (362)
263 KOG2773 Apoptosis antagonizing 54.4 7.7 0.00017 37.2 1.7 7 362-368 446-452 (483)
264 TIGR00927 2A1904 K+-dependent 54.3 6.1 0.00013 41.9 1.2 12 119-130 904-915 (1096)
265 TIGR00927 2A1904 K+-dependent 53.9 5.9 0.00013 42.0 1.0 8 163-170 933-940 (1096)
266 KOG1295 Nonsense-mediated deca 53.6 19 0.00041 33.9 4.1 67 294-360 8-77 (376)
267 PF03468 XS: XS domain; Inter 52.0 7.6 0.00017 30.2 1.1 57 294-353 9-75 (116)
268 PF09073 BUD22: BUD22; InterP 51.7 12 0.00027 36.7 2.8 22 344-365 408-429 (432)
269 KOG4213 RNA-binding protein La 51.3 23 0.00051 29.5 3.8 71 294-369 112-183 (205)
270 KOG2375 Protein interacting wi 51.1 48 0.001 34.6 6.8 8 166-173 297-304 (756)
271 COG5593 Nucleic-acid-binding p 47.9 15 0.00033 36.1 2.6 18 123-140 802-819 (821)
272 KOG2773 Apoptosis antagonizing 47.7 9.2 0.0002 36.7 1.1 7 302-308 390-396 (483)
273 PF02084 Bindin: Bindin; Inte 46.5 94 0.002 27.0 6.7 8 396-403 28-35 (238)
274 KOG4483 Uncharacterized conser 45.6 46 0.001 31.5 5.2 55 293-354 391-446 (528)
275 KOG4264 Nucleo-cytoplasmic pro 45.3 8.4 0.00018 37.5 0.5 14 166-179 214-227 (694)
276 PTZ00415 transmission-blocking 45.1 11 0.00023 42.5 1.3 8 146-153 286-293 (2849)
277 KOG4264 Nucleo-cytoplasmic pro 43.7 10 0.00022 37.0 0.8 9 337-345 443-451 (694)
278 KOG4008 rRNA processing protei 43.4 18 0.00039 31.6 2.1 34 292-325 39-72 (261)
279 KOG4365 Uncharacterized conser 41.4 5.2 0.00011 38.0 -1.5 77 120-197 4-80 (572)
280 TIGR01651 CobT cobaltochelatas 40.6 18 0.00039 36.5 2.0 17 119-135 295-311 (600)
281 KOG3973 Uncharacterized conser 40.1 85 0.0018 29.2 5.9 8 308-315 243-250 (465)
282 COG5193 LHP1 La protein, small 39.1 14 0.00031 34.8 1.0 60 294-353 175-244 (438)
283 PF02714 DUF221: Domain of unk 38.7 32 0.00069 32.3 3.4 36 338-375 1-36 (325)
284 PF11823 DUF3343: Protein of u 37.6 38 0.00083 23.6 2.8 27 337-363 3-29 (73)
285 COG4547 CobT Cobalamin biosynt 37.5 24 0.00052 34.1 2.1 12 183-194 423-434 (620)
286 COG5638 Uncharacterized conser 36.2 1E+02 0.0022 29.4 5.9 81 291-371 144-296 (622)
287 PF11823 DUF3343: Protein of u 35.4 1.5E+02 0.0033 20.5 5.7 62 162-225 2-64 (73)
288 COG4907 Predicted membrane pro 35.0 70 0.0015 31.1 4.7 40 308-357 489-537 (595)
289 cd04908 ACT_Bt0572_1 N-termina 34.8 1.4E+02 0.0031 20.0 8.2 49 306-359 14-63 (66)
290 KOG4008 rRNA processing protei 33.5 37 0.0008 29.7 2.5 35 116-150 37-71 (261)
291 KOG1308 Hsp70-interacting prot 33.5 85 0.0019 29.5 4.9 19 305-323 216-234 (377)
292 COG5180 PBP1 Protein interacti 33.0 1.4E+02 0.003 29.2 6.3 6 131-136 220-225 (654)
293 PF03439 Spt5-NGN: Early trans 31.1 1.4E+02 0.0031 21.5 5.0 36 319-359 33-68 (84)
294 PF03896 TRAP_alpha: Transloco 31.1 20 0.00043 32.8 0.6 7 120-126 85-91 (285)
295 KOG2044 5'-3' exonuclease HKE1 30.9 1.5E+02 0.0032 31.2 6.5 19 243-261 631-649 (931)
296 COG4547 CobT Cobalamin biosynt 30.7 45 0.00097 32.4 2.8 9 121-129 318-326 (620)
297 COG5193 LHP1 La protein, small 30.1 24 0.00052 33.4 0.9 61 118-178 173-243 (438)
298 PF00403 HMA: Heavy-metal-asso 29.8 1.7E+02 0.0036 19.2 6.8 54 295-354 1-58 (62)
299 PF04959 ARS2: Arsenite-resist 29.5 20 0.00044 31.2 0.3 13 354-366 114-126 (214)
300 KOG0020 Endoplasmic reticulum 29.1 3.5E+02 0.0076 26.9 8.3 25 118-143 335-359 (785)
301 PF07423 DUF1510: Protein of u 28.5 48 0.001 29.0 2.4 12 130-141 149-160 (217)
302 PHA03169 hypothetical protein; 28.2 93 0.002 29.3 4.2 9 216-224 303-311 (413)
303 PF12829 Mhr1: Transcriptional 28.0 1.3E+02 0.0028 22.3 4.1 55 298-356 17-72 (91)
304 KOG4000 Uncharacterized conser 27.6 4.3E+02 0.0094 23.4 13.8 112 143-310 14-130 (291)
305 PF09073 BUD22: BUD22; InterP 27.3 62 0.0013 31.9 3.3 7 301-307 405-411 (432)
306 KOG3753 Circadian clock protei 26.9 2.9E+02 0.0062 29.6 7.8 18 293-310 593-610 (1114)
307 PTZ00191 60S ribosomal protein 26.3 1.9E+02 0.004 23.5 5.2 53 298-353 86-140 (145)
308 PRK13259 regulatory protein Sp 26.3 86 0.0019 23.3 3.0 26 319-344 2-27 (94)
309 PF04026 SpoVG: SpoVG; InterP 26.1 92 0.002 22.6 3.2 26 319-344 2-27 (84)
310 KOG0772 Uncharacterized conser 25.9 32 0.0007 33.8 1.0 18 115-132 175-192 (641)
311 KOG2147 Nucleolar protein invo 25.4 97 0.0021 32.2 4.2 13 132-144 397-409 (823)
312 PRK11901 hypothetical protein; 23.7 2.6E+02 0.0055 26.2 6.2 65 112-181 238-304 (327)
313 PF12782 Innate_immun: Inverte 23.5 2.2E+02 0.0047 24.4 5.3 6 348-353 13-18 (311)
314 KOG2393 Transcription initiati 23.5 65 0.0014 31.9 2.6 73 13-85 277-352 (555)
315 KOG2192 PolyC-binding hnRNP-K 23.3 3.2E+02 0.0069 24.5 6.4 14 294-307 169-182 (390)
316 KOG1980 Uncharacterized conser 23.3 61 0.0013 33.0 2.3 16 135-150 466-481 (754)
317 PRK14548 50S ribosomal protein 21.7 3.2E+02 0.007 19.8 5.4 55 122-179 23-79 (84)
318 KOG4761 Proteasome formation i 21.5 5.7E+02 0.012 22.7 7.5 71 372-443 178-248 (266)
319 TIGR03636 L23_arch archaeal ri 20.8 3.2E+02 0.007 19.4 5.4 56 121-179 15-72 (77)
320 COG2608 CopZ Copper chaperone 20.7 3E+02 0.0064 19.0 5.1 45 294-344 4-48 (71)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.7e-56 Score=396.39 Aligned_cols=261 Identities=42% Similarity=0.706 Sum_probs=248.4
Q ss_pred hhcCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc-cCee
Q 013087 112 LLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKK 190 (449)
Q Consensus 112 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i-~g~~ 190 (449)
....++.+|.|||+.||.++.+++|.-+|++.|+|-+++|+.++.+|.+||||||.|.+++.|+.|++.||+..| .|+.
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 344568899999999999999999999999999999999999999999999999999999999999999999988 6999
Q ss_pred EEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCccc
Q 013087 191 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (449)
Q Consensus 191 l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (449)
|.|..+..++.|||+|||+.+++++|.+.+++.+++|..|.+...|....+++|||||+|.++..|..+.++|....+.+
T Consensus 156 igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl 235 (506)
T KOG0117|consen 156 LGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL 235 (506)
T ss_pred eEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCccc-cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHH
Q 013087 271 DDNAPTVSWADPRNAES-SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349 (449)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~ 349 (449)
.++.+.|.|+.|..... ......+.|||+||+.++|++.|+++|++||.|..|+.++| ||||+|.+.++|.
T Consensus 236 wgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~dav 307 (506)
T KOG0117|consen 236 WGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAV 307 (506)
T ss_pred cCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHH
Confidence 99999999999998765 46677899999999999999999999999999999999966 9999999999999
Q ss_pred HHHHHcCCceeCCeEeEEEeCCCCCCCCCCC
Q 013087 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380 (449)
Q Consensus 350 ~A~~~lng~~i~gr~l~v~~a~~~~~~~~~~ 380 (449)
+||+.+||..|+|..|.|.+|+|....+.-+
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhhhccch
Confidence 9999999999999999999999987765543
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.5e-46 Score=359.82 Aligned_cols=252 Identities=33% Similarity=0.630 Sum_probs=228.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc-CeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~ 194 (449)
+..+++|||+|||+++++++|+++|++||.|..|+|+++ .+|+++|||||+|.+.++|.+||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 455799999999999999999999999999999999999 67999999999999999999999999999985 8999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
.+...++|||+|||..+++++|.+.|.+++.++..+.+...+....++++||||.|.+..+|..|++.+....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999877777777665566778899999999999999999999988778889999
Q ss_pred CeeeeCCCCCccc-cccccccEEEEcCCCcCCCHHHHHHHHhcC--CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHH
Q 013087 275 PTVSWADPRNAES-SAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (449)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A 351 (449)
+.+.|+.+..... ......++|||+||+..+|+++|+++|+.| |.|+.|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 9999998875443 233445899999999999999999999999 999999876 45999999999999999
Q ss_pred HHHcCCceeCCeEeEEEeCCCCCCC
Q 013087 352 LKNTEKYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 352 ~~~lng~~i~gr~l~v~~a~~~~~~ 376 (449)
+..||+..|.|+.|+|+|++++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999986543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4e-46 Score=356.00 Aligned_cols=256 Identities=22% Similarity=0.406 Sum_probs=226.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||.++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccC
Q 013087 198 A------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271 (449)
Q Consensus 198 ~------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 271 (449)
+ ..+|||++||..+++++|+.+|..+|. |..+.++.+ ...+.++|||||.|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4 457999999999999999999999998 999999887 45678899999999999999999999998765544
Q ss_pred CCCCeeeeCCCCCccc----------------------------------------------------------------
Q 013087 272 DNAPTVSWADPRNAES---------------------------------------------------------------- 287 (449)
Q Consensus 272 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 287 (449)
...+.+.++.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 4555665553222000
Q ss_pred ------------------------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeC
Q 013087 288 ------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343 (449)
Q Consensus 288 ------------------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~ 343 (449)
.....+.+|||+|||+.+++++|+++|++||.|.+|+|++++.++.+||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00111336999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 344 ~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
+.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999987754
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.4e-41 Score=343.06 Aligned_cols=253 Identities=25% Similarity=0.431 Sum_probs=222.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||.++++++|+++|+.||.|..|+++.+.. |+++|||||+|.+.++|.+|++.+||..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~-g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDEN-GKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCC-CCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 356899999999999999999999999999999998864 8899999999999999999999999999999999987543
Q ss_pred c-----------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCC
Q 013087 198 A-----------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (449)
Q Consensus 198 ~-----------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (449)
. ..+|||+||+..+++++|+++|..||. |..+.++.+ ..+.++|||||.|.+..+|.+|+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2 245999999999999999999999998 999999987 36788999999999999999999999986
Q ss_pred CcccC--CCCCeeeeCCCCCccc--------------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCC
Q 013087 267 KFKLD--DNAPTVSWADPRNAES--------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330 (449)
Q Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~ 330 (449)
.+... +..+.+.++....... .......+|||+||+..+|+++|+++|+.||.|.+|+|+.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 55422 6667776665543321 11334678999999999999999999999999999999999 5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 331 ~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
++.++|||||+|.+.++|.+|+..|||..|+|++|.|.+|..+..
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 667799999999999999999999999999999999999987653
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-42 Score=287.56 Aligned_cols=254 Identities=24% Similarity=0.414 Sum_probs=228.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..+.|.|..||.++|+++|+.+|...|+|.+|++++|+.+|.+.||+||.|.++++|.+|+..|||..+..+.|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc------ccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccC
Q 013087 198 AKH------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271 (449)
Q Consensus 198 ~~~------~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 271 (449)
+.+ .|||++||+.++..+|..+|++||. |..-+++.+ +.++.++|.+||.|.....|..|+..+++....-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 754 7999999999999999999999999 777788888 77899999999999999999999999999766655
Q ss_pred CCCCeeeeCCCCCccc-----------------------------------------------------------ccccc
Q 013087 272 DNAPTVSWADPRNAES-----------------------------------------------------------SAASQ 292 (449)
Q Consensus 272 ~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 292 (449)
..++.|.++....... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 5555555554332111 00111
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
..||||.||.+++.+.-|+++|.+||.|..|+|++|..+.++|||+||++.+.++|..||..|||..+++|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.3e-39 Score=326.81 Aligned_cols=247 Identities=25% Similarity=0.448 Sum_probs=220.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc--
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA-- 198 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~-- 198 (449)
+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+|+..+++..|.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCC
Q 013087 199 ------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272 (449)
Q Consensus 199 ------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 272 (449)
..+|||+|||..+++..|+++|+.||. |.+|++..+ ..+.++|||||.|.+.++|..|+..+++. .+.+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~ 156 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLND 156 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--EecC
Confidence 347999999999999999999999998 999999886 46778999999999999999999999874 5566
Q ss_pred CCCeeeeCCCCCcc-ccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHH
Q 013087 273 NAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (449)
Q Consensus 273 ~~~~~~~~~~~~~~-~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A 351 (449)
+.+.+......... .......++|||+|||.++|+++|+++|+.||.|..+.++++.. +.++|||||+|.+.++|.+|
T Consensus 157 ~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-g~~~G~afV~F~~~e~A~~A 235 (562)
T TIGR01628 157 KEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-GRSRGFAFVNFEKHEDAAKA 235 (562)
T ss_pred ceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHH
Confidence 77776655444333 12334457899999999999999999999999999999998864 55699999999999999999
Q ss_pred HHHcCCceeC----CeEeEEEeCCCC
Q 013087 352 LKNTEKYEID----GQVLDCSLAKPQ 373 (449)
Q Consensus 352 ~~~lng~~i~----gr~l~v~~a~~~ 373 (449)
+..|||..|. |+.|.|.++..+
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred HHHhCCcEecccccceeeEeecccCh
Confidence 9999999999 999999877543
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-40 Score=277.56 Aligned_cols=228 Identities=23% Similarity=0.441 Sum_probs=193.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHH-HhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE-ELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~-~l~g~~i~g~~l~v~~ 195 (449)
...+||||+||..++|++-|..+|++.|.|+.++++.+.- + | ..|.. ....+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v--------~wa~~p~nQsk~t~~~------ 61 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------V--------NWATAPGNQSKPTSNQ------ 61 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------c--------ccccCcccCCCCcccc------
Confidence 3568999999999999999999999999999999987621 0 0 00000 0111111111
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCC
Q 013087 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (449)
Q Consensus 196 ~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (449)
.-.+|++.|...++.+.|++.|.+||+ |..+++++| ..+.+++||+||.|.+..+|+.|+..|++. -++.+.+
T Consensus 62 ---hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~I 134 (321)
T KOG0148|consen 62 ---HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTI 134 (321)
T ss_pred ---ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eecccee
Confidence 235789999999999999999999999 999999999 789999999999999999999999999985 7889999
Q ss_pred eeeeCCCCCccc------------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeC
Q 013087 276 TVSWADPRNAES------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343 (449)
Q Consensus 276 ~~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~ 343 (449)
+.+|+..+.... +.....++|||+||+..+|++.|++.|++||.|.+|||+++ +||+||.|.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999998775332 34444789999999999999999999999999999999999 799999999
Q ss_pred CHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCCCC
Q 013087 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379 (449)
Q Consensus 344 ~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~~~ 379 (449)
+.+.|.+||..+|+..|.|+.++|+|.+........
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 999999999999999999999999999877665443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.4e-37 Score=282.85 Aligned_cols=174 Identities=30% Similarity=0.486 Sum_probs=156.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCC
Q 013087 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (449)
Q Consensus 196 ~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (449)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 643110
Q ss_pred eeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
....++|||+|||..+|+++|+++|++||.|+.|+|++++.++.++|||||+|.+.++|.+||+.|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 000167999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCceeCC--eEeEEEeCCCCCCCC
Q 013087 356 EKYEIDG--QVLDCSLAKPQADQK 377 (449)
Q Consensus 356 ng~~i~g--r~l~v~~a~~~~~~~ 377 (449)
|+..|.+ ++|+|.|+.......
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccCCCceeEEEEECCcccccc
Confidence 9998876 789999998765443
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2e-36 Score=297.51 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=202.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh--CCCcccCeeEEEee
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL--NSCELKGKKIKCSA 195 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l--~g~~i~g~~l~v~~ 195 (449)
++++|||+|||+++|+++|+++|+.||.|..|.++++ ++||||+|.+.++|.+|+..+ ++..|.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999863 579999999999999999864 77899999999998
Q ss_pred cccc------------------cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHH
Q 013087 196 AQAK------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (449)
Q Consensus 196 ~~~~------------------~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (449)
+..+ ..|+|.||+..++++.|+++|..||. |..|.++++. ..++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 9999987752 2468999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeeCCCCCc---------------------------------c------------------
Q 013087 258 YSRQKMSNPKFKLDDNAPTVSWADPRNA---------------------------------E------------------ 286 (449)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~------------------ 286 (449)
+|++.|++..+.-+...+.+.|+.+... .
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999976644333344433322100 0
Q ss_pred ----------------------------------------ccccccccEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEe
Q 013087 287 ----------------------------------------SSAASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVI 325 (449)
Q Consensus 287 ----------------------------------------~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i 325 (449)
.....++++|||+||+. .+|+++|+++|+.||.|..|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012457999999997 6999999999999999999999
Q ss_pred cCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCC
Q 013087 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 326 ~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~ 374 (449)
++++ +|||||+|.+.++|..||..|||..|.|+.|+|.+++...
T Consensus 309 ~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9874 6999999999999999999999999999999999987654
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.8e-37 Score=279.97 Aligned_cols=252 Identities=25% Similarity=0.496 Sum_probs=225.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc-
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ- 197 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~- 197 (449)
+.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+++++|++.+++..+.|+.|+|..+.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -------------------------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEE
Q 013087 198 -------------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246 (449)
Q Consensus 198 -------------------------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~ 246 (449)
++..|.|+|||+.+...+|..+|+.||. |..|.|++. ..+...|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 1336899999999999999999999999 999999974 456666999
Q ss_pred EEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCcccccc------------------------------------
Q 013087 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA------------------------------------ 290 (449)
Q Consensus 247 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 290 (449)
||.|....+|..|+..+++. .+.++++.|.|+-+...-....
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999974 7789999999987663221100
Q ss_pred --------------------------------------------------ccccEEEEcCCCcCCCHHHHHHHHhcCCcE
Q 013087 291 --------------------------------------------------SQVKALYVKNLPKDITQDRLKELFAHHGKI 320 (449)
Q Consensus 291 --------------------------------------------------~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v 320 (449)
....+|||+|||+++|++.|..+|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 004799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC-----C-ceeCCeEeEEEeCCCCCC
Q 013087 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE-----K-YEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 321 ~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln-----g-~~i~gr~l~v~~a~~~~~ 375 (449)
..+.|+.++.++.++|.|||.|.+..+|..||.+.. | ..|.||.|.|..|-.+..
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999999999999862 4 779999999999987543
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.3e-35 Score=293.22 Aligned_cols=249 Identities=22% Similarity=0.375 Sum_probs=214.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||.++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred ccc------------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHH
Q 013087 196 AQA------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (449)
Q Consensus 196 ~~~------------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (449)
+.. ..+|||+|||..+++++|+++|..||. |..|.++.+ ..++.++|||||.|.+...|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 531 257999999999999999999999998 999999988 456789999999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeeCCCCCcc---------------------------------------------------
Q 013087 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAE--------------------------------------------------- 286 (449)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 286 (449)
.|+..|++ +.+.++.+.|.++......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 5667788888774211000
Q ss_pred ----------------------------------c-cccccccEEEEcCCCcCCC----------HHHHHHHHhcCCcEE
Q 013087 287 ----------------------------------S-SAASQVKALYVKNLPKDIT----------QDRLKELFAHHGKIT 321 (449)
Q Consensus 287 ----------------------------------~-~~~~~~~~l~V~nLp~~~t----------~e~L~~~F~~~G~v~ 321 (449)
. ......++|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0113457899999954444 368999999999999
Q ss_pred EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 322 ~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.|.|.... +.|++||+|.+.++|.+|++.|||+.|+||.|.|.|....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99997432 2699999999999999999999999999999999997654
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.6e-34 Score=289.44 Aligned_cols=245 Identities=24% Similarity=0.415 Sum_probs=202.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC------------CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSI------------GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~ 184 (449)
...++|||+|||+++|+++|+.+|..| +.|..+.+ +..+|||||+|.+.++|..||. |+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 346899999999999999999999975 34555555 4467899999999999999995 9999
Q ss_pred cccCeeEEEeecc-----------------------------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEE
Q 013087 185 ELKGKKIKCSAAQ-----------------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229 (449)
Q Consensus 185 ~i~g~~l~v~~~~-----------------------------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~ 229 (449)
.|.|+.|+|.... ....|||+|||..+++++|+++|..||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999996321 1247999999999999999999999998 999
Q ss_pred EEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccc----------------------
Q 013087 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---------------------- 287 (449)
Q Consensus 230 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 287 (449)
+.++.+ ..++.++|||||+|.+...|..|+..|++. .+.++.+.|.++.......
T Consensus 325 ~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999988 467889999999999999999999999875 4567777777764322110
Q ss_pred --cccccccEEEEcCCCcCC----------CHHHHHHHHhcCCcEEEEEecCCC---CCCCcccEEEEEeCCHHHHHHHH
Q 013087 288 --SAASQVKALYVKNLPKDI----------TQDRLKELFAHHGKITKVVIPPAK---PGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 288 --~~~~~~~~l~V~nLp~~~----------t~e~L~~~F~~~G~v~~v~i~~~~---~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
.....+++|+|.||.... ..++|+++|++||.|..|.|++.. ..+.+.|+|||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 011246789999996421 236899999999999999998753 23445799999999999999999
Q ss_pred HHcCCceeCCeEeEEEeCCC
Q 013087 353 KNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 353 ~~lng~~i~gr~l~v~~a~~ 372 (449)
..|||..|+|+.|.|.|...
T Consensus 482 ~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999764
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=263.07 Aligned_cols=254 Identities=23% Similarity=0.447 Sum_probs=225.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-ccC--eeEEEee
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKG--KKIKCSA 195 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~-i~g--~~l~v~~ 195 (449)
.-+|||+-||..++|.||+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |.| ..|.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3469999999999999999999999999999999999999999999999999999999999998765 544 6788888
Q ss_pred ccc-------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCc
Q 013087 196 AQA-------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (449)
Q Consensus 196 ~~~-------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (449)
+.. .++|||+-|++..++.+++++|.+||. |..|.++++ ..+.++|++||.|.+.+.|..|++.|++...
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 864 457899999999999999999999998 999999997 4789999999999999999999999997533
Q ss_pred -ccCCCCCeeeeCCCCCcccccccc-------------------------------------------------------
Q 013087 269 -KLDDNAPTVSWADPRNAESSAASQ------------------------------------------------------- 292 (449)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 292 (449)
.-...++-|.|+++.+........
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 234456677777776544311110
Q ss_pred --------------------------------------------------------------------------------
Q 013087 293 -------------------------------------------------------------------------------- 292 (449)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (449)
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence
Q ss_pred -------------------------------------------------------------------------ccEEEEc
Q 013087 293 -------------------------------------------------------------------------VKALYVK 299 (449)
Q Consensus 293 -------------------------------------------------------------------------~~~l~V~ 299 (449)
...|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 6789999
Q ss_pred CCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 300 nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
+||.+.-+.+|...|..||.|...++..++.++.+++|+||.|++..+|..||..|||+.|++++|+|.+...+..
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999776543
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.1e-34 Score=276.99 Aligned_cols=147 Identities=24% Similarity=0.481 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++++++|+++|.+||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred c-----------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHH
Q 013087 197 Q-----------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259 (449)
Q Consensus 197 ~-----------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 259 (449)
. ...+|||+||+..+++++|+++|+.||. |..+++.++ ..++.++|||||.|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 3 1257999999999999999999999999 999999998 45788999999999999999999
Q ss_pred HHHcCC
Q 013087 260 RQKMSN 265 (449)
Q Consensus 260 ~~~~~~ 265 (449)
+..|++
T Consensus 263 I~amNg 268 (612)
T TIGR01645 263 IASMNL 268 (612)
T ss_pred HHHhCC
Confidence 999985
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.9e-34 Score=280.60 Aligned_cols=240 Identities=20% Similarity=0.266 Sum_probs=201.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC--eeEEEeec
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCSAA 196 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~ 196 (449)
..+|||.||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.|||..|.+ +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999987542 4699999999999999999999999965 35665543
Q ss_pred c-------------------------------------------------------------------------------
Q 013087 197 Q------------------------------------------------------------------------------- 197 (449)
Q Consensus 197 ~------------------------------------------------------------------------------- 197 (449)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------cccccccCCCCC-CCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHH
Q 013087 198 ----------------------AKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254 (449)
Q Consensus 198 ----------------------~~~~~~v~~lp~-~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~ 254 (449)
+...|||+||+. .++++.|+++|..||. |..|+++.+ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 113689999997 6999999999999998 999999886 3699999999999
Q ss_pred HHHHHHHHcCCCCcccCCCCCeeeeCCCCCccc---------------------------------cccccccEEEEcCC
Q 013087 255 CAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---------------------------------SAASQVKALYVKNL 301 (449)
Q Consensus 255 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 301 (449)
+|..|+..|++. .+.++.+.+.++....... ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999985 4567888877664321100 00124579999999
Q ss_pred CcCCCHHHHHHHHhcCCc--EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE------eEEEeCCCC
Q 013087 302 PKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV------LDCSLAKPQ 373 (449)
Q Consensus 302 p~~~t~e~L~~~F~~~G~--v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~------l~v~~a~~~ 373 (449)
|..+|+++|+++|+.||. |..|++..... . .+++|||+|.+.++|.+||..||+..|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~-~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDN-E-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCC-C-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 88898875543 2 3789999999999999999999999999985 999999864
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-29 Score=236.45 Aligned_cols=250 Identities=25% Similarity=0.476 Sum_probs=216.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.+.|||.||+++++..+|.++|+.||.|++|++..+.+ | ++|| ||+|.+.+.|.+|++.+||..+.+++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999986 6 9999 9999999999999999999999999999976543
Q ss_pred --------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcC
Q 013087 199 --------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264 (449)
Q Consensus 199 --------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 264 (449)
-..+++.+++...+...|...|..+|. |.++.++.+ ..+.+++|+||.|.+.++|..|+..++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhcc
Confidence 235789999999999999999999999 999999996 455699999999999999999999999
Q ss_pred CCCcccCCCCCeeeeCCCCCcc--------------ccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCC
Q 013087 265 NPKFKLDDNAPTVSWADPRNAE--------------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330 (449)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~ 330 (449)
+..+. +..+.+..+...... .........|||.||+..++.+.|+.+|+.||.|..++|+.+..
T Consensus 230 ~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~ 307 (369)
T KOG0123|consen 230 GKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN 307 (369)
T ss_pred CCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC
Confidence 86554 344444444332111 12244468999999999999999999999999999999999876
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCC
Q 013087 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 331 ~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~ 377 (449)
+.. +||+||.|.+.++|.+|+..+|+..+.++.|.|.++.....+.
T Consensus 308 g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 308 GKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 655 9999999999999999999999999999999999998555443
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.9e-29 Score=231.41 Aligned_cols=240 Identities=24% Similarity=0.422 Sum_probs=214.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
..|||+ +++|+..|.++|+.+|+|.+|++.++. | +.|||||.|.++.+|.+|+..+|...+.|+.|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 999999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred -cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 013087 200 -HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (449)
Q Consensus 200 -~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (449)
..+||.||+..++...|.++|+.||. |.+|++..+... ++|| ||+|.+...|.+|+..+++. .+.++.+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 34899999999999999999999999 999999998433 9999 99999999999999999985 5566666666
Q ss_pred eCCCCCccc----cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 279 WADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 279 ~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
......... .....-..++|.|++.+++...|..+|..+|.|..+.++.+..+. +++|+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 655543322 123335789999999999999999999999999999999998877 599999999999999999999
Q ss_pred cCCceeCCeEeEEEeCCCC
Q 013087 355 TEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 355 lng~~i~gr~l~v~~a~~~ 373 (449)
||+..+.+..+.|..+..+
T Consensus 228 l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ccCCcCCccceeecccccc
Confidence 9999999999999988764
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=213.41 Aligned_cols=249 Identities=23% Similarity=0.410 Sum_probs=205.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc-
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ- 197 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~- 197 (449)
=|+|||+.|.+.+.++.|+..|..||+|++|.+..|+.|++.+|||||+|.-++.|+.|++.|||..+.||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ----------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHH
Q 013087 198 ----------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261 (449)
Q Consensus 198 ----------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 261 (449)
.-+++||..+.+++++.+|+..|+.||+ |..|.+-+. ......+||+|++|.+......|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhh
Confidence 2357999999999999999999999999 999999998 4677889999999999999999988
Q ss_pred HcCCCCcccCCCCCeeeeCCCCCccc------ccc---------------------------------------------
Q 013087 262 KMSNPKFKLDDNAPTVSWADPRNAES------SAA--------------------------------------------- 290 (449)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--------------------------------------------- 290 (449)
.||- +.+++..++|..+......- ...
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8873 33333333332221110000 000
Q ss_pred --------------------------------------------------------------------------------
Q 013087 291 -------------------------------------------------------------------------------- 290 (449)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (449)
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence
Q ss_pred ---------------ccccEEEEcCC--CcCCCH---HHHHHHHhcCCcEEEEEecCCCCCCCc----ccEEEEEeCCHH
Q 013087 291 ---------------SQVKALYVKNL--PKDITQ---DRLKELFAHHGKITKVVIPPAKPGQER----SRYGFVHFAERS 346 (449)
Q Consensus 291 ---------------~~~~~l~V~nL--p~~~t~---e~L~~~F~~~G~v~~v~i~~~~~~~~~----kg~afV~F~~~~ 346 (449)
..++.|.++|+ |.++++ .+|++-|.+||.|.+|.|...+.+..- ----||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 00678888997 556554 678999999999999999887765421 124699999999
Q ss_pred HHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 347 SAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 347 ~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
++.+|..+|+|++|+||++....-.
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHHHHHhhccceecCceeehhhhh
Confidence 9999999999999999998766543
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.9e-28 Score=221.46 Aligned_cols=234 Identities=25% Similarity=0.412 Sum_probs=195.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
..+|.|+||||.|...+|+.+|+.||.|..|.|.+.+. |+-.|||||+|....+|..|++.+|+..|.||+|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67899999999999999999999999999999998887 55559999999999999999999999999999999999750
Q ss_pred --------------------------------------------------------------------------------
Q 013087 199 -------------------------------------------------------------------------------- 198 (449)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (449)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred ----------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHH
Q 013087 199 ----------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262 (449)
Q Consensus 199 ----------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 262 (449)
..+|||+|||+.++++.|.+.|+.||+ |..+.++.+ ..+++++|.|||.|.+...+..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 126999999999999999999999999 999999998 67999999999999999999999988
Q ss_pred c----CCCCcccCCCCCeeeeCCCCCccccc-------------------------------------------------
Q 013087 263 M----SNPKFKLDDNAPTVSWADPRNAESSA------------------------------------------------- 289 (449)
Q Consensus 263 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 289 (449)
. ....+.+.++.+.+..+-.+......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 7 33347788888888887766322100
Q ss_pred --------cccccEEEEcCCCcCCCHHHHHHHHhcC-----CcEE-EEEecCCC---CCCCcccEEEEEeCCHHHHHHHH
Q 013087 290 --------ASQVKALYVKNLPKDITQDRLKELFAHH-----GKIT-KVVIPPAK---PGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 290 --------~~~~~~l~V~nLp~~~t~e~L~~~F~~~-----G~v~-~v~i~~~~---~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
...-++|.|+|||..++...|..+.... +.|. -|+.+... ..+.+.||+||.|.-++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 0004688999999999999998887542 2222 23333332 23556899999999999999999
Q ss_pred HHc
Q 013087 353 KNT 355 (449)
Q Consensus 353 ~~l 355 (449)
+.+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 965
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=2e-26 Score=224.64 Aligned_cols=174 Identities=24% Similarity=0.464 Sum_probs=152.0
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 013087 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (449)
Q Consensus 199 ~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (449)
.++|||+||+..+++++|+++|..||. |.+|.++.+ ..+++++|||||.|.+..+|..|+..+++. .+.++.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 467999999999999999999999998 999999998 567889999999999999999999999874 5677877777
Q ss_pred eCCCCCccc-------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHH
Q 013087 279 WADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (449)
Q Consensus 279 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A 351 (449)
+........ ......++|||+|||+.+++++|+++|+.||.|..|+|.+++.++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 543322111 1122347999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHcCCceeCCeEeEEEeCCCCCCC
Q 013087 352 LKNTEKYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 352 ~~~lng~~i~gr~l~v~~a~~~~~~ 376 (449)
+..||+..|+|+.|+|.++.++...
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999875443
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=2.5e-27 Score=225.02 Aligned_cols=248 Identities=22% Similarity=0.348 Sum_probs=206.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..+.|+|+|||..+..++|..+|..||.|..|.+.+. | -.++|.|.++.+|.+|++.|....+....+.+.++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 3478999999999999999999999999999955422 1 258999999999999999998877766655544332
Q ss_pred --------------------------------------------------------cccccccCCCCCCCCHHHHHHHHH
Q 013087 198 --------------------------------------------------------AKHRLFIGNVPRNWGEDDMRKAVT 221 (449)
Q Consensus 198 --------------------------------------------------------~~~~~~v~~lp~~~~~~~l~~~f~ 221 (449)
....||+.||++..+...+...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 011399999999999999999999
Q ss_pred hhCCCcEEEEEecCC--CCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCC-----cccccccccc
Q 013087 222 KIGPGVISIELVKDP--QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-----AESSAASQVK 294 (449)
Q Consensus 222 ~~g~~v~~~~~~~~~--~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 294 (449)
..|. |.++.|...+ .....+.||+||+|.+..+|..|++.|++. .+.++.+.+.++.... ........+.
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCccccccccccccccccc
Confidence 9887 8888777643 335567799999999999999999999964 6778888888777111 1112222367
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCC
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~ 374 (449)
.|.|+|||+.++..+|+.+|..||.|..|+|++....+.++|||||+|-++.+|.+|+.+|....|.||+|.+.||+...
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999999999999986667779999999999999999999999999999999999998754
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=187.96 Aligned_cols=173 Identities=23% Similarity=0.358 Sum_probs=155.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
...||||+||+..+++..|.++|-+.|+|.++++.+++.+...+|||||+|.+.++|+-|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
....
T Consensus 88 ~~~~---------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 88 AHQK---------------------------------------------------------------------------- 91 (203)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
....+.+|||+||.+.+++..|.+.|+.||.|.. -.|++++.++.++|||||.|.+.+.+.+|+..+|
T Consensus 92 -----------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 92 -----------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred -----------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 0001267999999999999999999999999765 5889999999999999999999999999999999
Q ss_pred CceeCCeEeEEEeCCCCCCCC
Q 013087 357 KYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 357 g~~i~gr~l~v~~a~~~~~~~ 377 (449)
|..+++|+|+|+++..+....
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999998665543
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=2.7e-27 Score=218.91 Aligned_cols=246 Identities=23% Similarity=0.382 Sum_probs=208.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
+..+|||+-.|+..++..+|.+||+.+|.|..|+|+.++.+++++|.|||+|.+.+....||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 346899999999999999999999999999999999999999999999999999999999996 9999999999999865
Q ss_pred cc--------------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHH
Q 013087 197 QA--------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256 (449)
Q Consensus 197 ~~--------------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 256 (449)
.. -..|+++||.+++++..|+.+|++||. |..|.+.++ ..++.++||+|++|.+..+|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 41 123899999999999999999999999 999999998 56999999999999999999
Q ss_pred HHHHHHcCCCCcccCCCCCeeeeCCCCCcccc------------------------------------------------
Q 013087 257 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESS------------------------------------------------ 288 (449)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 288 (449)
.+|+..||+ +.+.++.++|.....+.....
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999998 777777666544332211110
Q ss_pred --------------------c-------cccccEEEEcCC--CcCCC--------HHHHHHHHhcCCcEEEEEecCCCCC
Q 013087 289 --------------------A-------ASQVKALYVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKPG 331 (449)
Q Consensus 289 --------------------~-------~~~~~~l~V~nL--p~~~t--------~e~L~~~F~~~G~v~~v~i~~~~~~ 331 (449)
. ...+.|+.|.|+ |...| .++|.+-|.+||.|..|.+-+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-- 489 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-- 489 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC--
Confidence 0 012456777776 33333 27788999999999999997764
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 332 ~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
-|+.||.|.+.+.|..|+++|||.+|.||.|.+.|-.-
T Consensus 490 ---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 490 ---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred ---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 48999999999999999999999999999999999654
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.2e-27 Score=210.57 Aligned_cols=173 Identities=28% Similarity=0.486 Sum_probs=151.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCccc-CCCCCeeee
Q 013087 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSW 279 (449)
Q Consensus 201 ~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-~~~~~~~~~ 279 (449)
++||+.||+.|++.+|+++|++||. |.+|.+++| ..++.++|+|||.|.+..+|.+|+.++++..... ..+.+.+.+
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 6899999999999999999999998 999999999 7888999999999999999999999998765443 445668888
Q ss_pred CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCc-
Q 013087 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY- 358 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~- 358 (449)
++....+- ...++|||+-|+..+|+.+|+++|++||.|++|+|+++.++.+ ||||||+|.+.+.|..||+.|||.
T Consensus 114 Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 114 ADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccce
Confidence 77665432 3358999999999999999999999999999999999987665 999999999999999999999974
Q ss_pred eeCC--eEeEEEeCCCCCCCCCC
Q 013087 359 EIDG--QVLDCSLAKPQADQKTS 379 (449)
Q Consensus 359 ~i~g--r~l~v~~a~~~~~~~~~ 379 (449)
.+.| .+|.|.||.++..+...
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred eeccCCCceEEEecccCCCchHH
Confidence 4666 58999999988776443
No 25
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=7.3e-25 Score=200.16 Aligned_cols=249 Identities=18% Similarity=0.284 Sum_probs=189.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.......|.+++|||++|+++|++||+.|+ |.++.+.+. +|+..|-|||+|.+.+++.+||+ ++-..+..|.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 345567899999999999999999999997 777666554 49999999999999999999998 89999999999998
Q ss_pred eccc-----------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEE-EEEecCCCCCCCCeeEEEEecCCHHHH
Q 013087 195 AAQA-----------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACA 256 (449)
Q Consensus 195 ~~~~-----------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a 256 (449)
.+.. ...|.+++||+.+++++|.++|+..-. +.. |.++.+ ..++..+.|||+|.+.+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHH
Confidence 7642 235788999999999999999998876 333 556665 4556999999999999999
Q ss_pred HHHHHHcCCCCcccCCCCCeee-----------------------------------eCCCCC-----------------
Q 013087 257 EYSRQKMSNPKFKLDDNAPTVS-----------------------------------WADPRN----------------- 284 (449)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~----------------- 284 (449)
+.|+...... ++.+.+.|. +...+.
T Consensus 159 e~Al~rhre~---iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g 235 (510)
T KOG4211|consen 159 EIALGRHREN---IGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYG 235 (510)
T ss_pred HHHHHHHHHh---hccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccc
Confidence 9998765420 000000000 000000
Q ss_pred ------------------------cc---c----------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecC
Q 013087 285 ------------------------AE---S----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 327 (449)
Q Consensus 285 ------------------------~~---~----------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~ 327 (449)
.. . ........++.++||+..+..+|..+|+..-. ..|.|-.
T Consensus 236 ~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~i 314 (510)
T KOG4211|consen 236 FSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEI 314 (510)
T ss_pred cccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEe
Confidence 00 0 00011378899999999999999999997544 3777766
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCC
Q 013087 328 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 328 ~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~ 376 (449)
.+++.. .|-|+|+|.|.++|..|+.. ++..++.+.|.+.+.......
T Consensus 315 g~dGr~-TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~ 361 (510)
T KOG4211|consen 315 GPDGRA-TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGAS 361 (510)
T ss_pred CCCCcc-CCcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccc
Confidence 665555 88999999999999999996 888899999998887544433
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=3.2e-25 Score=211.90 Aligned_cols=170 Identities=26% Similarity=0.459 Sum_probs=152.9
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
++.+|||+|||..+++.+|+++|..||+ |..|+++.+ ..+++++|||||.|.+.++|..|+..+++ ..+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEEE
Confidence 3578999999999999999999999998 999999998 56788999999999999999999999987 4678889999
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
.++.+.... ...++|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|.+|+..|||
T Consensus 78 ~~a~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeecccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 988765432 2347899999999999999999999999999999999988888899999999999999999999999
Q ss_pred ceeCC--eEeEEEeCCCCCC
Q 013087 358 YEIDG--QVLDCSLAKPQAD 375 (449)
Q Consensus 358 ~~i~g--r~l~v~~a~~~~~ 375 (449)
..+.| ++|.|.|+..+..
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CccCCCceeEEEEECCCCCc
Confidence 99887 6789999876653
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-25 Score=188.40 Aligned_cols=140 Identities=28% Similarity=0.572 Sum_probs=133.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.-.|||+.|...++.++|++.|.+||+|.+++|++|.+|++++||+||.|.++++|+.||..|||..|.+|.|+..++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ----------------------ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHH
Q 013087 199 ----------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256 (449)
Q Consensus 199 ----------------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 256 (449)
.+++|+++++..++++.|++.|.+||+ |.+|+++++ +||+||.|.+.+.|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 357999999999999999999999999 999999997 79999999999999
Q ss_pred HHHHHHcCCC
Q 013087 257 EYSRQKMSNP 266 (449)
Q Consensus 257 ~~a~~~~~~~ 266 (449)
.+|+-.+++.
T Consensus 214 ahAIv~mNnt 223 (321)
T KOG0148|consen 214 AHAIVQMNNT 223 (321)
T ss_pred HHHHHHhcCc
Confidence 9999999874
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=5.1e-26 Score=193.62 Aligned_cols=155 Identities=26% Similarity=0.500 Sum_probs=142.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
..|||+|||..+++.+|+.+|++||+|++|.|+++ ||||..+++..|.-||..||+..|+|..|.|..++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 35999999999999999999999999999999986 9999999999999999999999999999999887654
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 013087 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (449)
Q Consensus 200 ~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (449)
++
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.+.+|+|+||.+.++..+|+..|.+||.|.+|.|+++ |+||.|.-.++|..|++.|++..
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 1278999999999999999999999999999999954 99999999999999999999999
Q ss_pred eCCeEeEEEeCCCCCCCCCCC
Q 013087 360 IDGQVLDCSLAKPQADQKTSG 380 (449)
Q Consensus 360 i~gr~l~v~~a~~~~~~~~~~ 380 (449)
|.|++++|.+++++-+...+.
T Consensus 137 ~~gk~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred cccceeeeeeeccccccCCCC
Confidence 999999999999876655443
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=195.09 Aligned_cols=144 Identities=26% Similarity=0.490 Sum_probs=127.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+.+||.|||+++.+.+|+++|. +.|+|..|.++.|.. |+++|+|.|+|++++.+++|++.||...+.||+|.|..-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 346799999999999999999996 789999999999987 999999999999999999999999999999999999742
Q ss_pred c-------------------------------------------------------------------------------
Q 013087 197 Q------------------------------------------------------------------------------- 197 (449)
Q Consensus 197 ~------------------------------------------------------------------------------- 197 (449)
.
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 2
Q ss_pred ------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCC
Q 013087 198 ------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (449)
Q Consensus 198 ------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (449)
....+||.||...+....|.+.|.-.|. |..+.+-.+ ..+.++++|.++|..+-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 1125788999999999999999999887 888888776 3457889999999999999999988874
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=3e-24 Score=212.22 Aligned_cols=171 Identities=21% Similarity=0.401 Sum_probs=147.0
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
..++|||+|||..+++.+|+++|..+|. |..|.++.+ ..++.++|||||.|.+.++|.+|+. +++. .+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEE
Confidence 4567999999999999999999999997 999999998 5678899999999999999999996 4443 456666666
Q ss_pred eeCCCCCccc--------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHH
Q 013087 278 SWADPRNAES--------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349 (449)
Q Consensus 278 ~~~~~~~~~~--------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~ 349 (449)
.+........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 6543322111 11122589999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHcCCceeCCeEeEEEeCCCC
Q 013087 350 KALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 350 ~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
+|+..|||..|.|+.|+|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=182.24 Aligned_cols=171 Identities=26% Similarity=0.461 Sum_probs=157.2
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
.+..|.|.-||..+++++++.+|...|+ |.+|++++| ..++.+-||+||.|..+.+|.+|+..+++ +.+..+.++|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEEE
Confidence 4567889999999999999999999999 999999999 78999999999999999999999999997 6788999999
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
+++.|.... .....|||.+||..+|..+|.++|++||.|.--+|+.+..++.+||.+||.|+...+|..||+.|||
T Consensus 116 SyARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 116 SYARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred EeccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 999887543 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCC--eEeEEEeCCCCCCC
Q 013087 358 YEIDG--QVLDCSLAKPQADQ 376 (449)
Q Consensus 358 ~~i~g--r~l~v~~a~~~~~~ 376 (449)
..-.| -+|.|.||..+...
T Consensus 192 ~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCCCeEEEecCCcccc
Confidence 88776 47999999876543
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.6e-23 Score=186.42 Aligned_cols=165 Identities=21% Similarity=0.411 Sum_probs=143.4
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
..+.|||+.||.++.+++|..+|.+.|. |..++++++ ..++.++|||||.|++...|+.|++.|++..+. .++.+.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igv 158 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGV 158 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccc-eeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEE
Confidence 3468999999999999999999999999 999999999 579999999999999999999999999986554 4555555
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCC-CCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKP-GQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~-~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
..+... ++|||+|||.++++++|.+.|++.+. |++|.+...++ ..++||||||+|.++..|..|.++|
T Consensus 159 c~Svan----------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 159 CVSVAN----------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred EEeeec----------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 544333 89999999999999999999999987 88887776654 4668999999999999999999887
Q ss_pred C--CceeCCeEeEEEeCCCCCC
Q 013087 356 E--KYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 356 n--g~~i~gr~l~v~~a~~~~~ 375 (449)
- .+.+.|+.+.|.||.+...
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred cCCceeecCCcceeeccCcccC
Confidence 5 4668899999999998654
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=9.6e-24 Score=189.57 Aligned_cols=178 Identities=24% Similarity=0.484 Sum_probs=156.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
+.++|||++|+|.++++.|+.+|.+||.|..|.+++++.+++++||+||+|.+.+....+|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999986 67788999999988776
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
+...--..
T Consensus 84 ~r~~~~~~------------------------------------------------------------------------ 91 (311)
T KOG4205|consen 84 SREDQTKV------------------------------------------------------------------------ 91 (311)
T ss_pred Cccccccc------------------------------------------------------------------------
Confidence 54320000
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
......++|||++||.++++++|++.|.+||.|..+.++.+..+..++||+||+|.+.+.+.+++. ..-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000023899999999999999999999999999999999999999999999999999999999998 578
Q ss_pred ceeCCeEeEEEeCCCCCCCCCC
Q 013087 358 YEIDGQVLDCSLAKPQADQKTS 379 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~~~~~~~ 379 (449)
+.|.++.+.|..|.++......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8999999999999998765543
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=3.2e-23 Score=202.20 Aligned_cols=190 Identities=22% Similarity=0.373 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhCCCcccCeeEEEeecc-----------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCC
Q 013087 171 KELASQAIEELNSCELKGKKIKCSAAQ-----------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239 (449)
Q Consensus 171 ~~~A~~Al~~l~g~~i~g~~l~v~~~~-----------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~ 239 (449)
.+.|.+||..++|..+........+.. ..++|||+|||..+++++|+++|.++|. |..++++++ .+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~s 95 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FS 95 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CC
Confidence 578888888788777654444333321 2368999999999999999999999998 999999998 57
Q ss_pred CCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCc
Q 013087 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319 (449)
Q Consensus 240 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 319 (449)
+.++|||||.|.+.++|..|+..|++..+. .++.+.+.++. ..++|||+|||.++|+++|.++|++++.
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~----------~~~rLFVgNLP~~~TeeeL~eeFskv~e 164 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISV----------DNCRLFVGGIPKNKKREEILEEFSKVTE 164 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccccc----------cCceeEeecCCcchhhHHHHHHhhcccC
Confidence 899999999999999999999999985442 23444444432 2389999999999999999999999864
Q ss_pred -EEEEEe-cCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC--ceeCCeEeEEEeCCCCC
Q 013087 320 -ITKVVI-PPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 320 -v~~v~i-~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~i~gr~l~v~~a~~~~ 374 (449)
|+.+.+ .......+++|||||+|.++++|..|++.|+. ..|.|+.|.|.|+.+..
T Consensus 165 gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 165 GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 444444 33344566799999999999999999998863 46889999999998753
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.9e-24 Score=178.01 Aligned_cols=242 Identities=21% Similarity=0.400 Sum_probs=161.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-ccC--eeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKG--KKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~-i~g--~~l~v 193 (449)
-..++|||+-|...-.++|++.+|..||.|.+|.+++..+ |.++|+|||.|.+.-+|..||..|+|.. +.| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3567899999999999999999999999999999999988 9999999999999999999999999976 444 56888
Q ss_pred eecccccc------------------------------------------------------------------------
Q 013087 194 SAAQAKHR------------------------------------------------------------------------ 201 (449)
Q Consensus 194 ~~~~~~~~------------------------------------------------------------------------ 201 (449)
+++...+.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 87752110
Q ss_pred ------------------ccc------------CCCCCCCCHHHHHHHHHhhCCCcE---E---EEEecCCCCCCCCeeE
Q 013087 202 ------------------LFI------------GNVPRNWGEDDMRKAVTKIGPGVI---S---IELVKDPQNANQNRGF 245 (449)
Q Consensus 202 ------------------~~v------------~~lp~~~~~~~l~~~f~~~g~~v~---~---~~~~~~~~~~~~~~g~ 245 (449)
--+ ..|+...+-..-.+..-..|-.+. + ...+.. ...+. .
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~-a~~g~-~-- 251 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQ-AYAGV-Q-- 251 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhh-hhhhH-H--
Confidence 000 000000000000000000000000 0 000000 00000 0
Q ss_pred EEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEe
Q 013087 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325 (449)
Q Consensus 246 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i 325 (449)
.|. ..+..++..+... +. .....+ ..........+.|||..||....+.+|..+|-.||.|++.++
T Consensus 252 ---~Y~--Aaypaays~v~~~-~p--q~p~~~------~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 252 ---QYA--AAYPAAYSPISQA-FP--QPPPLL------PQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred ---HHh--hhcchhhhhhhhc-CC--CCcchh------hhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 000 0000111111100 00 000000 000123344699999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCC
Q 013087 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 326 ~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~ 377 (449)
+.|+.+..+|+|+||.|+++.+|..||.+|||+.|+-++|+|.+.+++..++
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999999999999999999999999999999999887543
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=7.8e-22 Score=197.86 Aligned_cols=168 Identities=17% Similarity=0.308 Sum_probs=134.1
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhh-----------CCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCC
Q 013087 197 QAKHRLFIGNVPRNWGEDDMRKAVTKI-----------GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (449)
Q Consensus 197 ~~~~~~~v~~lp~~~~~~~l~~~f~~~-----------g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (449)
...++|||+|||..+++++|.++|..+ +..|..+.+. ..++||||+|.+.+.|..|+. |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 345689999999999999999999986 2223334332 357899999999999999994 665
Q ss_pred CCcccCCCCCeeeeCCCCCc-------------------------cccccccccEEEEcCCCcCCCHHHHHHHHhcCCcE
Q 013087 266 PKFKLDDNAPTVSWADPRNA-------------------------ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320 (449)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v 320 (449)
. .+.+..+.+.+...... ........++|||+|||+.+|+++|+++|+.||.|
T Consensus 245 ~--~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 I--IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred e--EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3 44455555543211100 00112335799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCC
Q 013087 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 321 ~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~ 374 (449)
..+.|+++..++.++|||||+|.+.++|..||..|||..|+|+.|.|.++....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999889899999999999999999999999999999999999997543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=185.49 Aligned_cols=222 Identities=25% Similarity=0.411 Sum_probs=175.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
....+|||+|||+.++++||+.+| |||.|..+..|.+|...++|+.+.|+.|.|...
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 356789999999999999999998 799999999999999999999999999987654
Q ss_pred c-------------------------------------------------------------------------------
Q 013087 197 Q------------------------------------------------------------------------------- 197 (449)
Q Consensus 197 ~------------------------------------------------------------------------------- 197 (449)
.
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 3
Q ss_pred ----------------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHH
Q 013087 198 ----------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 255 (449)
Q Consensus 198 ----------------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 255 (449)
....++++|||.....+++..+|..||+ |..+.+. | ...-++|.|.+..+
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp--~-----~G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP--P-----GGTGAIVEFLNPLE 433 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC--c-----ccceeeeeecCccc
Confidence 1125788999999999999999999998 8877433 1 23358999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCeeeeCCCCCcc---------------------------c-------------------cc
Q 013087 256 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---------------------------S-------------------SA 289 (449)
Q Consensus 256 a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~-------------------~~ 289 (449)
|..|+..+.-..+. ...+.+.|+...... . ..
T Consensus 434 Ar~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 434 ARKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hHHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 99999988753321 111111111100000 0 00
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCC---CcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~---~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
....++|||.||++++|.++|..+|...|.|..+.|...++.. .|.|||||+|.+.++|.+|++.|+|..|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0012349999999999999999999999999999888766542 3569999999999999999999999999999999
Q ss_pred EEeCC
Q 013087 367 CSLAK 371 (449)
Q Consensus 367 v~~a~ 371 (449)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99998
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1e-19 Score=162.32 Aligned_cols=243 Identities=22% Similarity=0.289 Sum_probs=188.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC--cccCeeEEEe
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKCS 194 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~ 194 (449)
..++.|.+||||+++++.+|..++..||.|..+.+++.++ .|||+|.+.++|..-+...... .+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999987543 8999999999998844322222 2566666666
Q ss_pred eccc----------------------------------------------ccccccCCCCCCCCHHHHHHHHHhhCCCcE
Q 013087 195 AAQA----------------------------------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228 (449)
Q Consensus 195 ~~~~----------------------------------------------~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~ 228 (449)
++.- --.++|.++-+.++-+-|..+|++||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 5430 003567788888999999999999999 77
Q ss_pred EEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCcc----------------------
Q 013087 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---------------------- 286 (449)
Q Consensus 229 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 286 (449)
.|..+.. .+.--|.|+|.+...|..|...|.++.+.-+...+++.++.-....
T Consensus 179 KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 179 KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 7766543 2333488999999999999999999877665555544433211000
Q ss_pred -------------------------c----------cccc--cccEEEEcCC-CcCCCHHHHHHHHhcCCcEEEEEecCC
Q 013087 287 -------------------------S----------SAAS--QVKALYVKNL-PKDITQDRLKELFAHHGKITKVVIPPA 328 (449)
Q Consensus 287 -------------------------~----------~~~~--~~~~l~V~nL-p~~~t~e~L~~~F~~~G~v~~v~i~~~ 328 (449)
. .... ....|.|.|| ...+|.+-|..+|.-||.|.+|.|+.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0 0000 1367888888 567999999999999999999999988
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCC
Q 013087 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 329 ~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~ 376 (449)
+ +--|.|+|.+...|.-|+..|+|..|.|++|+|.+++...-.
T Consensus 334 k-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 334 K-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred C-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 7 457999999999999999999999999999999999876543
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=6.2e-20 Score=149.15 Aligned_cols=83 Identities=19% Similarity=0.414 Sum_probs=79.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
+..
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 543
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.4e-20 Score=165.30 Aligned_cols=171 Identities=23% Similarity=0.466 Sum_probs=151.2
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 013087 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (449)
Q Consensus 200 ~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (449)
+++||+.|.+.+.++.|+..|.+||+ |.+|.+-+| ..+++.+||+||+|.-++.|..|++.||+. .++++.++|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 57899999999999999999999999 999999999 578999999999999999999999999984 67888888875
Q ss_pred CCCCCccc-------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 280 ADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 280 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
........ .....-++|||..+.++++++||+.+|+.||.|..|.+-+.+.++.+|||+||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 44332222 11122479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeCCeEeEEEeCCCCC
Q 013087 353 KNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 353 ~~lng~~i~gr~l~v~~a~~~~ 374 (449)
..||-+.++|..|+|-.+-.+.
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 9999999999999998876443
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=2.4e-19 Score=149.08 Aligned_cols=207 Identities=18% Similarity=0.341 Sum_probs=151.2
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 119 GSEVYLGGIPHDASDDDLRH----FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
..||||.||...+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999887 9999999999998876 6799999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
+|..+.+++.+--+..+..+. ......+...+ ... ..++.....
T Consensus 86 yA~s~sdii~~~~~~~v~~~~----------k~~~~~~~~~~-~~~---------------------~~ng~~~~~---- 129 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEK----------KINGEILARIK-QPL---------------------DTNGHFYNM---- 129 (221)
T ss_pred cccCccchhhccCceeccccC----------ccccccccccC-Ccc---------------------ccccccccc----
Confidence 999887754432211000000 00000000000 000 000000000
Q ss_pred CeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
.......+. ......+...||+.|||..++.+.|..+|.+|.....|+++... ++.|||+|.+...|..|...
T Consensus 130 ~~~~~p~p~--~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 130 NRMNLPPPF--LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred ccccCCCCc--cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 000000011 12334456899999999999999999999999999999998876 68999999999999999999
Q ss_pred cCCceeC-CeEeEEEeCC
Q 013087 355 TEKYEID-GQVLDCSLAK 371 (449)
Q Consensus 355 lng~~i~-gr~l~v~~a~ 371 (449)
|++..|- ...++|.+++
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9998887 8889998875
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4.2e-18 Score=135.83 Aligned_cols=173 Identities=14% Similarity=0.260 Sum_probs=131.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||.++.+.+|.++|.+||.|..|.|...+ ..-.||||+|+++.+|..||.--+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999986553 35679999999999999999999999999999999988
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCe
Q 013087 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (449)
Q Consensus 197 ~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (449)
.....-.-.. | .+.-.++.
T Consensus 81 rggr~s~~~~-----------------G------------------------------------------~y~gggrg-- 99 (241)
T KOG0105|consen 81 RGGRSSSDRR-----------------G------------------------------------------SYSGGGRG-- 99 (241)
T ss_pred cCCCcccccc-----------------c------------------------------------------ccCCCCCC--
Confidence 6432100000 0 00000000
Q ss_pred eeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
.+..-............+|.|.+||.+.++++|+++....|.|....+.++ |++.|+|-..++..-|++.|.
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000011111278999999999999999999999999999999887 689999999999999999998
Q ss_pred CceeC
Q 013087 357 KYEID 361 (449)
Q Consensus 357 g~~i~ 361 (449)
...+.
T Consensus 172 ~~~~~ 176 (241)
T KOG0105|consen 172 DQKFR 176 (241)
T ss_pred ccccc
Confidence 76654
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.79 E-value=9.9e-18 Score=146.91 Aligned_cols=204 Identities=23% Similarity=0.362 Sum_probs=146.2
Q ss_pred hcCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 013087 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT--------EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184 (449)
Q Consensus 113 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~ 184 (449)
...+..++.|||.|||.++|.+++..+|++||.|. .|+|.++.. |..+|-|.|.|-..+++..|+..|++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcc
Confidence 34466678899999999999999999999999877 488999887 999999999999999999999999999
Q ss_pred cccCeeEEEeecccccc--cccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHH
Q 013087 185 ELKGKKIKCSAAQAKHR--LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262 (449)
Q Consensus 185 ~i~g~~l~v~~~~~~~~--~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 262 (449)
.|.|+.|+|..|+=... ..+..-.. .....++. ..+....
T Consensus 207 ~~rg~~~rVerAkfq~Kge~~~~~k~k-~k~~~~kk-------------------------------------~~k~q~k 248 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKGEYDASKKEK-GKCKDKKK-------------------------------------LKKQQQK 248 (382)
T ss_pred cccCcEEEEehhhhhhccCcCcccccc-cccccHHH-------------------------------------HHHHHHh
Confidence 99999999998752110 00100000 00000000 1111111
Q ss_pred cCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCC----cCCC-------HHHHHHHHhcCCcEEEEEecCCCCC
Q 013087 263 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP----KDIT-------QDRLKELFAHHGKITKVVIPPAKPG 331 (449)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp----~~~t-------~e~L~~~F~~~G~v~~v~i~~~~~~ 331 (449)
+ +. |.. ...........++|.|+||- +..+ .++|++-+++||.|..|.|.-...
T Consensus 249 ~----~d---------w~p-d~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP- 313 (382)
T KOG1548|consen 249 L----LD---------WRP-DRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP- 313 (382)
T ss_pred h----cc---------cCC-CccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC-
Confidence 0 00 000 01111223334899999983 2233 366778899999999998874433
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 332 ~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.|.+-|.|.+.++|..||+.|+|+.|+||.|..+.....
T Consensus 314 ---dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 314 ---DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ---CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 689999999999999999999999999999998886544
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=4.8e-19 Score=164.54 Aligned_cols=174 Identities=22% Similarity=0.449 Sum_probs=142.1
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 013087 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (449)
Q Consensus 199 ~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (449)
.+++|+-.|+...++.+|.++|+.+|. |..++++.+ ....+++|.+||+|.+......|+. |.+. .+.+.++.+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-LsGq--rllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LSGQ--RLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHhh-hcCC--cccCceeEec
Confidence 356777788888889999999999999 999999999 7889999999999999999988884 4433 2334444443
Q ss_pred eCCCCCccc----------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHH
Q 013087 279 WADPRNAES----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348 (449)
Q Consensus 279 ~~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A 348 (449)
.....+... ....+...|||+||.+++++++|+.+|++||.|..|.+.++..++.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 332222111 1111223499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeCCeEeEEEeCCCCCCCC
Q 013087 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 349 ~~A~~~lng~~i~gr~l~v~~a~~~~~~~ 377 (449)
++|+..|||+.|.||.|+|.....+-...
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999877654433
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.76 E-value=7.5e-17 Score=142.91 Aligned_cols=253 Identities=15% Similarity=0.211 Sum_probs=187.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
....|..++|||..++.+|..+|+..-.+...+.+.....|+..|.+.|.|.+.+.-..|++ -+...+.++.|.|..+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 45678899999999999999999876544444444444448888999999999999999998 68888999999998765
Q ss_pred ccc----------------------ccccCCCCCCCCHHHHHHHHH---hhCCCcEEEEEecCCCCCCCCeeEEEEecCC
Q 013087 198 AKH----------------------RLFIGNVPRNWGEDDMRKAVT---KIGPGVISIELVKDPQNANQNRGFAFIEYYN 252 (449)
Q Consensus 198 ~~~----------------------~~~v~~lp~~~~~~~l~~~f~---~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~ 252 (449)
... -+.+++||++++..++..+|. ..+.+...|-.+. ...++..|-|||.|..
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFAC 215 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecC
Confidence 321 356689999999999999995 3333355666665 3578889999999999
Q ss_pred HHHHHHHHHHcCCC---Cc----------------------ccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCH
Q 013087 253 HACAEYSRQKMSNP---KF----------------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 307 (449)
Q Consensus 253 ~~~a~~a~~~~~~~---~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~ 307 (449)
..+|..|+.+.... .+ .+.......-...+.... .......||.+++||+..+.
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~-p~~~~kdcvRLRGLPy~Atv 294 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV-PPTRSKDCVRLRGLPYEATV 294 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC-CCCCCCCeeEecCCChhhhH
Confidence 99999988765421 00 000000000000011100 11122579999999999999
Q ss_pred HHHHHHHhcCCc-EEE--EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 308 DRLKELFAHHGK-ITK--VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 308 e~L~~~F~~~G~-v~~--v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
++|..||..|-. |.. |+++.+..++. .|-|||+|.+.++|..|....++.....|.|.|.-+....-
T Consensus 295 EdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 295 EDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred HHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 999999999875 443 77777766554 89999999999999999999998888899999988765443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=7.9e-17 Score=144.07 Aligned_cols=236 Identities=17% Similarity=0.202 Sum_probs=186.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc-C-eeEEEeecc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-G-KKIKCSAAQ 197 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~-g-~~l~v~~~~ 197 (449)
-+++|.|+-+-+|-+-|..+|++||.|..|.-+...+ .--|.|+|.+.+.|..|...|+|..|. | +.|+|.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 4678999999999999999999999999887665422 224999999999999999999998874 3 567777654
Q ss_pred -------------------------------------------------------------------c--ccccccCCCC
Q 013087 198 -------------------------------------------------------------------A--KHRLFIGNVP 208 (449)
Q Consensus 198 -------------------------------------------------------------------~--~~~~~v~~lp 208 (449)
+ ...|.+.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 1234556665
Q ss_pred CC-CCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccc
Q 013087 209 RN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287 (449)
Q Consensus 209 ~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (449)
.. +|.+.|..+|.-||. |..|+++.+ .+.-|.|+|.+...|..|+..|++. .+.++.+++.++.......
T Consensus 307 ~~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccccC
Confidence 44 788999999999999 999999986 4578999999999999999999985 3445666665554332110
Q ss_pred -------------------------------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCccc
Q 013087 288 -------------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336 (449)
Q Consensus 288 -------------------------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg 336 (449)
...+++.+|++.|+|.++++++|+.+|...|-.+.......++ +.
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd----~k 453 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD----RK 453 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC----cc
Confidence 1224467999999999999999999999998866544433322 56
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceeCC-eEeEEEeCCC
Q 013087 337 YGFVHFAERSSAMKALKNTEKYEIDG-QVLDCSLAKP 372 (449)
Q Consensus 337 ~afV~F~~~~~A~~A~~~lng~~i~g-r~l~v~~a~~ 372 (449)
+|++.+.+.++|..|+..++++.++. ..|||+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999999986 4899999875
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.3e-17 Score=154.70 Aligned_cols=244 Identities=22% Similarity=0.421 Sum_probs=188.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-----------C-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSI-----------G-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
..+.++|+++|+.++++.+..+|..- | .|..+.+-. .+.||||+|.+.+.|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-ccchh
Confidence 46789999999999999999998754 2 377777744 45699999999999999997 89988
Q ss_pred ccCeeEEEeecc-----------------------------cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCC
Q 013087 186 LKGKKIKCSAAQ-----------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236 (449)
Q Consensus 186 i~g~~l~v~~~~-----------------------------~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 236 (449)
+.|+.+++.... ....+++++||..+++..+++++..||+ +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 999887775422 2347899999999999999999999999 999999999
Q ss_pred CCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCcc--------------------ccccccccEE
Q 013087 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE--------------------SSAASQVKAL 296 (449)
Q Consensus 237 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l 296 (449)
...+.+++|||..|.+......|+..+++.. ++...+.+..+-..... ......+..|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~--lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ--LGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhh--hcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 5568999999999999999999999998743 33333333332222111 1222334556
Q ss_pred EEcCCC--cCCC--------HHHHHHHHhcCCcEEEEEecCC-C--CCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe
Q 013087 297 YVKNLP--KDIT--------QDRLKELFAHHGKITKVVIPPA-K--PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (449)
Q Consensus 297 ~V~nLp--~~~t--------~e~L~~~F~~~G~v~~v~i~~~-~--~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr 363 (449)
++.|+- ..+. -++|+.-|.+||.|..|.|++. . .-....|..||+|.+.+++++|+.+|+|+.|.||
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 666541 1111 1556778899999999999987 2 2233457899999999999999999999999999
Q ss_pred EeEEEeCCC
Q 013087 364 VLDCSLAKP 372 (449)
Q Consensus 364 ~l~v~~a~~ 372 (449)
.|..+|-..
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 999998654
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.8e-17 Score=134.68 Aligned_cols=83 Identities=25% Similarity=0.623 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 654
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.73 E-value=4.3e-16 Score=137.71 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=198.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh--CCCcccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL--NSCELKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l--~g~~i~g~~l~ 192 (449)
.+..+-.|.|++|-..+++.+|.+.++.||.|..|..+..+ ..|.|+|.+.+.|..|+... +...+.|+.--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34567789999999999999999999999999999987654 48999999999999998733 33446777766
Q ss_pred Eeecccc-------------ccc--ccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHH
Q 013087 193 CSAAQAK-------------HRL--FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (449)
Q Consensus 193 v~~~~~~-------------~~~--~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (449)
+.++.+. +.| .|-|--+.++-+-|-.+..+.|. |..|.+++. +--.|.|+|.+.+.|.
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 6666422 222 34455567899999999999998 999988874 5567999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeeCCCCCccccc------------------------------------------------
Q 013087 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSA------------------------------------------------ 289 (449)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 289 (449)
+|...||+..+..+..++++.++.|.+..-..
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 99999999988888888888887766322100
Q ss_pred ------------------------------cccccEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEE
Q 013087 290 ------------------------------ASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338 (449)
Q Consensus 290 ------------------------------~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~a 338 (449)
..+...++|.+|... ++-+.|..+|..||.|..|.+++.+ .|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 011578999999754 6779999999999999999999887 5899
Q ss_pred EEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCC
Q 013087 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 339 fV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~ 374 (449)
.|++.+....++|+..||+..+.|.+|.|.+++...
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 999999999999999999999999999999988644
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=2.2e-16 Score=147.03 Aligned_cols=84 Identities=27% Similarity=0.387 Sum_probs=79.3
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+++|+++|+++|+.||.|+.|+|+++..++.++|||||+|.+.++|.+||..||+..|.+++|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 013087 370 AKPQ 373 (449)
Q Consensus 370 a~~~ 373 (449)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=125.35 Aligned_cols=224 Identities=18% Similarity=0.236 Sum_probs=130.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecC-CCCCCcccEEEEEecCHHHHHHHHHHhCCCccc---CeeEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAIEELNSCELK---GKKIK 192 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~---g~~l~ 192 (449)
..-+||||.+||.++...+|..+|..|--...+.|... +.....+.+|||.|.+...|..|+.+|||..+. +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999866666665443 222345689999999999999999999999885 78899
Q ss_pred EeecccccccccC---CCCCCCCHHHH----HHHH-HhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcC
Q 013087 193 CSAAQAKHRLFIG---NVPRNWGEDDM----RKAV-TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264 (449)
Q Consensus 193 v~~~~~~~~~~v~---~lp~~~~~~~l----~~~f-~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 264 (449)
+.+++...+.--. .-|...+.-.+ ...+ ... ...+....+|...... + +..|++...
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~---~qhd~~l~~p~~l~~~-~-----------~a~al~~~~ 176 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSAD---DQHDEGLSDPDELQEP-G-----------NADALKEND 176 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccch---hhccccccCccccCCc-c-----------ccccCCCcc
Confidence 9988754332111 11110000000 0000 000 0000000010000000 0 000000000
Q ss_pred CCCcccCCCCCeeeeCCCCC-------ccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccE
Q 013087 265 NPKFKLDDNAPTVSWADPRN-------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 337 (449)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~ 337 (449)
........-..+|+.+.. ........+.+|||-||..++|+++|+.+|+.|-....++|... ++ -..
T Consensus 177 --~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~v 250 (284)
T KOG1457|consen 177 --TTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPV 250 (284)
T ss_pred --ccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cce
Confidence 000000000011111110 11122333689999999999999999999999977666666432 22 358
Q ss_pred EEEEeCCHHHHHHHHHHcCCceeC
Q 013087 338 GFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 338 afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
|||.|.+.+.|..|+..|+|..|.
T Consensus 251 af~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 251 AFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred EeecHHHHHHHHHHHHHhhcceec
Confidence 999999999999999999987763
No 52
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.2e-16 Score=133.18 Aligned_cols=168 Identities=26% Similarity=0.437 Sum_probs=130.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
..|||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|.-|+..||+..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998854 68999999999999999999999999988888777532
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 013087 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (449)
Q Consensus 200 ~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (449)
..-. |. +. .+ .+.. |
T Consensus 74 ~~~~--------------------g~----------------~~-~g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR--------------------GR----------------PR-GG-------------------------DRRS---D 88 (216)
T ss_pred cccc--------------------CC----------------CC-CC-------------------------Cccc---h
Confidence 2100 00 00 00 0000 0
Q ss_pred CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.. .........+.|+|.||+..+.+.+|.++|.++|.+..+.+. ++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~---~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SR---RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hh---ccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchh
Confidence 00 000011122789999999999999999999999999666552 6799999999999999999999999
Q ss_pred eCCeEeEEEeCC
Q 013087 360 IDGQVLDCSLAK 371 (449)
Q Consensus 360 i~gr~l~v~~a~ 371 (449)
+.++.|.+..+.
T Consensus 158 ~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 158 LNGRRISVEKNS 169 (216)
T ss_pred hcCceeeecccC
Confidence 999999995443
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=7.2e-16 Score=110.30 Aligned_cols=70 Identities=33% Similarity=0.626 Sum_probs=66.1
Q ss_pred EEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 296 l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
|||+|||..+|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5566699999999999999999999999999999986
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.2e-15 Score=125.78 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=75.3
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|||++|++.++.+.|+++|++||.|+++.|+.|+.++++|||+||+|.+.++|.+|++. -+-.|+||+..|.+|.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhhc
Confidence 7999999999999999999999999999999999999999999999999999999999995 456899999999998763
Q ss_pred CC
Q 013087 374 AD 375 (449)
Q Consensus 374 ~~ 375 (449)
..
T Consensus 92 ~~ 93 (247)
T KOG0149|consen 92 GK 93 (247)
T ss_pred Cc
Confidence 33
No 55
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7e-16 Score=129.10 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=79.3
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|.|.||+.++++.+|+++|.+||.|..|+|.+++.++.+||||||+|.+.++|.+||..|||+-+++--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 013087 372 PQ 373 (449)
Q Consensus 372 ~~ 373 (449)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.7e-15 Score=108.39 Aligned_cols=70 Identities=40% Similarity=0.873 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 122 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 4589999999999999999999999999999999985
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=2.2e-15 Score=108.52 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=73.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
++.|||+|||+++|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-|-.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 489999999999999999999999999999999887766 78999999999999999999999999999999999776
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=1.6e-15 Score=123.51 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=77.6
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
...|.|.||.+.+|.++|+.+|++||.|.+|+|+.++-+..++|||||.|....+|+.|+.+|+|..|+|+.|+|.+|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999874
No 59
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.62 E-value=2.1e-14 Score=132.18 Aligned_cols=164 Identities=17% Similarity=0.266 Sum_probs=128.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeC
Q 013087 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280 (449)
Q Consensus 201 ~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 280 (449)
.|.++.||+++|+++|.++|..++ |..+.+.+ .+++..|-|||+|.+.+++.+|+++-. ..+..+.+.|-.+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR---~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDR---ESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhH---HHhCCceEEEEcc
Confidence 356689999999999999999988 77766554 478999999999999999999998754 3555666655544
Q ss_pred CCCCc-----ccc--ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 281 DPRNA-----ESS--AASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 281 ~~~~~-----~~~--~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
..... ... .......|.+++||+.||+++|.+||+..-.|.. |.++.+.... +.|-|||+|.+.+.|++||
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHHH
Confidence 32211 111 1134578999999999999999999998766666 5556665555 6899999999999999999
Q ss_pred HHcCCceeCCeEeEEEeCCCCC
Q 013087 353 KNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 353 ~~lng~~i~gr~l~v~~a~~~~ 374 (449)
.. |...|+.|.|.|..+....
T Consensus 163 ~r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred HH-HHHhhccceEEeehhHHHH
Confidence 96 8889999999999876543
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=127.35 Aligned_cols=77 Identities=31% Similarity=0.687 Sum_probs=71.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
++|||++|+|.++.+.|+++|++||.|++..|+.|+.||+++||+||+|++.++|.+|++ -.+-.|.||+..|+.+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 579999999999999999999999999999999999999999999999999999999997 45567899999887663
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.3e-15 Score=112.89 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=76.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
+++|||+||++.+++++|.++|+.+|.|..|.+-.++.+..+=|||||+|.+.++|..|++-+||..++.+.|+|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 38999999999999999999999999999999999998888889999999999999999999999999999999999764
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=3.8e-15 Score=106.39 Aligned_cols=70 Identities=31% Similarity=0.572 Sum_probs=64.9
Q ss_pred EEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 296 l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
|||+|||+.+++++|+++|+.||.|..|++..++. +.++++|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 77799999999999999999999999999999985
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.7e-15 Score=130.79 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=77.3
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
......++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..+ |||||||+|++.+||.+|..+|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34445699999999999999999999999999999999987543 3799999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
..|+.+-.
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987543
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=6.4e-15 Score=127.78 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=71.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.++. ++|||||+|.+.++|..||. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 38999999999999999999999999999999998864 36899999999999999996 999999999999999864
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 65
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.1e-15 Score=117.23 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=70.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||.++.+.+|.++|.+||.|..|.+...+.. .+||||+|+++.+|..||..-+|..++|+.|+|.|+..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~---ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGP---PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCC---CCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 489999999999999999999999999999988654321 46999999999999999999999999999999999874
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.3e-15 Score=123.89 Aligned_cols=82 Identities=27% Similarity=0.517 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|.|.||+.++++.+|+++|.+||.|..|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..--|+|.+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 013087 198 AK 199 (449)
Q Consensus 198 ~~ 199 (449)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.4e-14 Score=103.45 Aligned_cols=70 Identities=41% Similarity=0.834 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 122 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 99999999999999999999999998999999885
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=3.4e-14 Score=131.95 Aligned_cols=170 Identities=29% Similarity=0.574 Sum_probs=125.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+.+|..||.|..|.+..++.++.++|||||.|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998899999999999999999999999999999999999988653
Q ss_pred --ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCe
Q 013087 199 --KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (449)
Q Consensus 199 --~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (449)
........+ ....+. . .
T Consensus 195 ~~~~~~~~~~~--------~~~~~~-------------------------------------------~-------~--- 213 (306)
T COG0724 195 ASQPRSELSNN--------LDASFA-------------------------------------------K-------K--- 213 (306)
T ss_pred ccccccccccc--------cchhhh-------------------------------------------c-------c---
Confidence 000000000 000000 0 0
Q ss_pred eeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
..............+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++..
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 214 -----LSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred -----ccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 0000001122237899999999999999999999999998888877766555444555555555555444443
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=115.58 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=73.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+||+..+++.+|..+|..||.|..|.|-..+ .|||||+|+++.+|..|+..|+|..|.|..|+|.+.+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3899999999999999999999999999999998866 68999999999999999999999999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
....
T Consensus 85 ~~r~ 88 (195)
T KOG0107|consen 85 RPRG 88 (195)
T ss_pred Cccc
Confidence 6653
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=2.2e-12 Score=114.55 Aligned_cols=235 Identities=20% Similarity=0.278 Sum_probs=178.0
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc-C-eeEEEeeccccc-
Q 013087 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-G-KKIKCSAAQAKH- 200 (449)
Q Consensus 124 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~-g-~~l~v~~~~~~~- 200 (449)
|-|--+.+|.+-|..++...|.|.+|.|++. +--.|.|+|.+.+.|++|..+|||..|. | ++|+|.++++.+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455578999999999999999999999875 2357999999999999999999999874 3 678888876221
Q ss_pred --------------------------------------------------------------------------------
Q 013087 201 -------------------------------------------------------------------------------- 200 (449)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (449)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred -------ccccCCCCCC-CCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCC
Q 013087 201 -------RLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272 (449)
Q Consensus 201 -------~~~v~~lp~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 272 (449)
.+.|-+|... +.-+.|-.+|-.||. |..|+.++. ..|-|.|++.+....++|+..|++..+ -+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~~l--fG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNIPL--FG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccCcc--cc
Confidence 1233334332 455778899999998 999999886 578999999999999999999998654 23
Q ss_pred CCCeeeeCCCCC---------------------------------ccccccccccEEEEcCCCcCCCHHHHHHHHhcCCc
Q 013087 273 NAPTVSWADPRN---------------------------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319 (449)
Q Consensus 273 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 319 (449)
..+.+..+.+.. .......++++|+.-|.|..+||+.|..+|...+.
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 333222222110 00123344789999999999999999999987654
Q ss_pred -EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe------EeEEEeCCCCC
Q 013087 320 -ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ------VLDCSLAKPQA 374 (449)
Q Consensus 320 -v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr------~l~v~~a~~~~ 374 (449)
.+.|+|+..+.-++ .-+.++|++.++|..||..||...|.+. .|++.|++++.
T Consensus 433 ~~~svkvFp~kserS--ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERS--SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred CcceEEeeccccccc--ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 56788877664433 3578999999999999999999888763 46777776543
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=109.19 Aligned_cols=81 Identities=14% Similarity=0.335 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...++||||+||++.+|+++|.++|+++|.|..|.+=.++.+...=|||||+|.+.++|..|++.+++..|..+.|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999999899999999999999999999999999999999999986
Q ss_pred c
Q 013087 196 A 196 (449)
Q Consensus 196 ~ 196 (449)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.5e-14 Score=123.27 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. ++|||||+|.+.++|..||. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 57999999999999999996 999999999999998763
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.2e-14 Score=122.57 Aligned_cols=92 Identities=21% Similarity=0.413 Sum_probs=82.9
Q ss_pred CCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 282 ~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
|...+.....+-+||||.-|++++++..|+..|+.||.|..|+|+.+..+++++|||||+|.+..+...|.+..+|..|+
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 33333344455699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeEEEeCCCC
Q 013087 362 GQVLDCSLAKPQ 373 (449)
Q Consensus 362 gr~l~v~~a~~~ 373 (449)
|+.|.|.+-..+
T Consensus 170 grri~VDvERgR 181 (335)
T KOG0113|consen 170 GRRILVDVERGR 181 (335)
T ss_pred CcEEEEEecccc
Confidence 999999997643
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.9e-15 Score=120.61 Aligned_cols=79 Identities=18% Similarity=0.381 Sum_probs=75.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+.-|||+|||+.+|+-+|.-+|++||.|++|.+++++.|+.++||||+.|.+..+...|+..|||..|.||.|+|.-..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999997643
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.5e-15 Score=121.18 Aligned_cols=80 Identities=23% Similarity=0.609 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+.-|||+|||+.+|+.||.-+|++||.|+.|.+++|+.||+|+||||+.|.+..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999754
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=4.4e-14 Score=129.56 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=71.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCH--HHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER--SSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~--~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..+|||+||++.+|+++|+.+|..||.|.+|.|++. ++ ||||||+|.+. .++.+||..|||..|.||.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 379999999999999999999999999999999944 44 89999999987 7899999999999999999999999
Q ss_pred CCC
Q 013087 371 KPQ 373 (449)
Q Consensus 371 ~~~ 373 (449)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 874
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7.1e-14 Score=100.82 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=75.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 114 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
..|...+.|||+|||+++|.+++.++|.+||.|..|+|=..+. .+|.|||.|.+..+|.+|+..|+|..+.++.|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3455678999999999999999999999999999999977644 7899999999999999999999999999999999
Q ss_pred eecccc
Q 013087 194 SAAQAK 199 (449)
Q Consensus 194 ~~~~~~ 199 (449)
.+.++.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 987654
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.3e-14 Score=112.44 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
-.++|||+||+.++++.+|..+|..||+|..|+|...+ -|||||+|.++.+|..|+..|+|..|.|..|+|..+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999998865 4899999999999999999999999999999999876
Q ss_pred c
Q 013087 198 A 198 (449)
Q Consensus 198 ~ 198 (449)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.8e-14 Score=123.67 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|+|.|||+...+.||+.+|.+||.|.+|.|+-+. ..||||+||+|.+.++|++|.++|||..|.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 346789999999999999999999999999999998875 459999999999999999999999999999999999988
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 653
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=3.1e-14 Score=116.08 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
-++|.|-||.+.+|.++|+.+|++||.|.+|.|..++.|+.++|||||.|....+|+.|+++|+|..|.|+.|+|..|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998765
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=117.22 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
+.+.+|||+||++.+|+++|++||+.||.|.+|+|+++ +..++||||+|.++++|..|+. |+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 35789999999999999999999999999999999998 4566899999999999999996 9999999999999876
Q ss_pred c
Q 013087 197 Q 197 (449)
Q Consensus 197 ~ 197 (449)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.7e-14 Score=119.97 Aligned_cols=80 Identities=20% Similarity=0.472 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
+=+||||.-|+.++++..|+..|+.||+|+.|+|+.++.||+++|||||+|.++.+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999997654
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=9.2e-14 Score=127.47 Aligned_cols=78 Identities=22% Similarity=0.519 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCH--HHHHHHHHHhCCCcccCeeEEEee
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK--ELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~--~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...+|||+||++++|+++|+.+|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999999 4456 99999999987 789999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8754
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2e-13 Score=116.41 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=70.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
..+|||+||++.+|+++|++||+.||.|.+|+|+++..+ ++||||+|.+.++|..|+. |||..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 489999999999999999999999999999999988433 5799999999999999996 999999999999998764
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.5e-14 Score=116.78 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=80.5
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||++|...+|+.-|...|-+||.|.+|.|+.+-.+++.||||||+|.-.++|.+||..||+..|.||.|+|.||+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
..-.
T Consensus 90 ~kik 93 (298)
T KOG0111|consen 90 EKIK 93 (298)
T ss_pred cccc
Confidence 6543
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.9e-13 Score=97.04 Aligned_cols=72 Identities=35% Similarity=0.609 Sum_probs=67.1
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
+|||+|||..++.++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|.+|+..+++..|.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999877 5568999999999999999999999999999999874
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=104.75 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
-.+..|||.++...+|+++|.+.|..||+|++|++..++.||..+|||.|+|.+.+.|++|+..+||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 013087 197 Q 197 (449)
Q Consensus 197 ~ 197 (449)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 4
No 88
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1e-13 Score=111.07 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=77.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..+|||+||+..++++.|+++|-+.|.|++++|++++-++..+|||||+|.+.++|.-|++.||...|.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3899999999999999999999999999999999999999899999999999999999999999999999999999998
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.6e-13 Score=95.62 Aligned_cols=71 Identities=37% Similarity=0.586 Sum_probs=67.0
Q ss_pred EcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 298 V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
|+|||..+++++|+.+|+.||.|..+.+..++.++.++++|||+|.+.++|.+|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988778889999999999999999999999999999999874
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=1e-12 Score=94.08 Aligned_cols=72 Identities=35% Similarity=0.730 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+|||+|||..++.++|+++|..||.|..+.+..++ +.++++|||+|.+.+.|.+|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999998876 7788999999999999999999999999999999873
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=7.3e-13 Score=125.02 Aligned_cols=83 Identities=19% Similarity=0.426 Sum_probs=79.8
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
+.|||+|||+++++++|..+|+..|.|..++++.|+.+++.+||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCC
Q 013087 374 ADQ 376 (449)
Q Consensus 374 ~~~ 376 (449)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 553
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=4.1e-13 Score=101.81 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=81.3
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+.......|||.++...+|+++|.+.|..||.|..+.+-.++.++..||||+|+|.+.+.|.+|+..|||..|-|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.|+-.+..
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99865544
No 93
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=1.4e-11 Score=111.65 Aligned_cols=173 Identities=17% Similarity=0.332 Sum_probs=138.4
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 013087 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (449)
Q Consensus 199 ~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (449)
.+.+||+|||+.+..++|+.+|......|..|.++.| ..++.++++.|+|.+++.+++|++.|+. +.+.++.+.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 4558999999999999999999876666999999996 6899999999999999999999999985 23333333322
Q ss_pred eCCCC---------------------------------------------Cccc--------------------------
Q 013087 279 WADPR---------------------------------------------NAES-------------------------- 287 (449)
Q Consensus 279 ~~~~~---------------------------------------------~~~~-------------------------- 287 (449)
-.... ....
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 11110 0000
Q ss_pred ----------cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 288 ----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 288 ----------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
-..+...++||.||.+.+....|++.|.-.|.|..|.+-.++.+ .++|||.|+|..+-.|..||..|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhcc
Confidence 01111578999999999999999999999999999999888887 5599999999999999999999998
Q ss_pred ceeCCeEeEEEeCCCCCCC
Q 013087 358 YEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~~~~ 376 (449)
.-+..++..+.+..-..+.
T Consensus 279 ~g~~~~~~~~Rl~~~~Drn 297 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDRIPDRN 297 (608)
T ss_pred CCCccccceeecccccccc
Confidence 7788899988886655443
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.4e-12 Score=88.17 Aligned_cols=56 Identities=32% Similarity=0.512 Sum_probs=51.8
Q ss_pred HHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 310 L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
|+++|++||.|..|.+.... +++|||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998875 489999999999999999999999999999999986
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=2.9e-12 Score=92.30 Aligned_cols=74 Identities=35% Similarity=0.605 Sum_probs=68.9
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988766 4489999999999999999999999999999999875
No 96
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.39 E-value=3e-12 Score=120.15 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=71.0
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|||+|||.+++..+|+++|..||.|+...|.....++...+||||+|.+.+++..||.+ +-..|++++|.|.-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999888876554444459999999999999999996 688999999999987765
Q ss_pred CCC
Q 013087 374 ADQ 376 (449)
Q Consensus 374 ~~~ 376 (449)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 543
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2.3e-12 Score=91.91 Aligned_cols=71 Identities=38% Similarity=0.784 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 124 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
|+|||..+++++|+.+|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999999873
No 98
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.6e-12 Score=91.07 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=54.6
Q ss_pred HHHHHHHHh----cCCcEEEEE-ecCCCCC--CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 307 QDRLKELFA----HHGKITKVV-IPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 307 ~e~L~~~F~----~~G~v~~v~-i~~~~~~--~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
+++|+++|+ .||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999985 6665555 7789999999999999999999999999999999873
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.9e-12 Score=118.69 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
...++|+|-|||.+++.++|+.+|+.||+|+.|+.-+. .+|.+||+|.+..+|++|+++|++..|.|+.|+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 45789999999999999999999999999999775443 6689999999999999999999999999998883
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-12 Score=107.50 Aligned_cols=83 Identities=25% Similarity=0.531 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..+||||++|...+++.-|...|=.||.|..|.+..+-.+++.||||||+|...++|..|+..||+..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 198 AKH 200 (449)
Q Consensus 198 ~~~ 200 (449)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.2e-11 Score=89.10 Aligned_cols=74 Identities=38% Similarity=0.732 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+|+|+|||..+++++|+++|+.||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998876 37789999999999999999999999999999998853
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3.4e-12 Score=120.53 Aligned_cols=80 Identities=31% Similarity=0.659 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988643
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=7.1e-12 Score=116.30 Aligned_cols=80 Identities=31% Similarity=0.564 Sum_probs=77.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|..||.|..|.+..++.++.++|||||+|.+.++|..|+..+++..|.|++|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 49999999999999999999999999999999999998889999999999999999999999999999999999999764
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.31 E-value=8.1e-12 Score=112.83 Aligned_cols=181 Identities=24% Similarity=0.328 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..+++|++++.+++.+.++..++..+|.+..+.+.....+..++|+++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999998888888877779999999999999999999998433345555555433222
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
... +.+.+ ..
T Consensus 167 ~~~-~~~~n------------------------------------------------------------------~~--- 176 (285)
T KOG4210|consen 167 RRG-LRPKN------------------------------------------------------------------KL--- 176 (285)
T ss_pred ccc-ccccc------------------------------------------------------------------hh---
Confidence 111 00000 00
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
...........++|++|++.+++++|+.+|..+|.|..++++.++.++.++|||||.|.+...+..++.. +.
T Consensus 177 -------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 177 -------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred -------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 0000011113445999999999999999999999999999999999999999999999999999999997 88
Q ss_pred ceeCCeEeEEEeCCCCCCC
Q 013087 358 YEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~~~~ 376 (449)
..+.+++++|.+..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CcccCcccccccCCCCccc
Confidence 8999999999998876553
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.6e-13 Score=131.13 Aligned_cols=234 Identities=16% Similarity=0.195 Sum_probs=190.0
Q ss_pred CCCCeEEEcCCCCCCCHH-HHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDD-DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...+.+.+.++-+..... ..+..|..+|.|..|++...........+.++.+....++..|.. ..+..+.++.+.|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 345667788887766655 567899999999999987743323333488999999999999987 788889999888877
Q ss_pred cccc----------------cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHH
Q 013087 196 AQAK----------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259 (449)
Q Consensus 196 ~~~~----------------~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 259 (449)
+.++ .++|++||+..+...+|...|..++. +..+++... ...++.+|+||+.|.....+.++
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 6533 36899999999999999999999887 666666533 56788899999999999999999
Q ss_pred HHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEE
Q 013087 260 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339 (449)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~af 339 (449)
+.......+. ...|+|.|+|+..|.+.|+.+|+.+|.+.+++++..+.+ +++|.||
T Consensus 726 V~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~g-kpkg~a~ 781 (881)
T KOG0128|consen 726 VAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAG-KPKGKAR 781 (881)
T ss_pred hhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcc-cccccee
Confidence 8766542211 268999999999999999999999999999997777654 4499999
Q ss_pred EEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCC
Q 013087 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 340 V~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~ 377 (449)
|.|.+..+|.+++.......+.-+.+.|..+.+.....
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 99999999999999888888888888888877744433
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.30 E-value=6.9e-11 Score=114.71 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=73.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
++||||++|+..+++.+|..+|+.||.|.+|.++.. +++|||.+....+|.+|+.+|++..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999887 79999999999999999999999999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6544
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8e-11 Score=109.71 Aligned_cols=171 Identities=18% Similarity=0.300 Sum_probs=117.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCC---CCCCccc---EEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK---DSGEAKG---YAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~tg~~~g---~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
.+.-++.|||++||++++++.|...|..||.+.- ...... ..--.+| |+|+.|.++.++..-+.++.- .-.+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 3455789999999999999999999999998763 222111 1123455 999999999998887765543 1122
Q ss_pred eeEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCc
Q 013087 189 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (449)
Q Consensus 189 ~~l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (449)
-.|+|.-..-+.. .|. |..+.+-.. -||..
T Consensus 333 ~yf~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv~d------------------ 362 (520)
T KOG0129|consen 333 YYFKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFVLD------------------ 362 (520)
T ss_pred eEEEEecCccccc-cee---------------------EEeeEeccc----------hhhhc------------------
Confidence 2333322221111 000 222222110 01100
Q ss_pred ccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHh-cCCcEEEEEecCCCCCCCcccEEEEEeCCHHH
Q 013087 269 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347 (449)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~ 347 (449)
.+....+.+||||++||..++.++|..+|+ -||.|..|-|-.|++-.-++|-|-|+|.+..+
T Consensus 363 -----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqs 425 (520)
T KOG0129|consen 363 -----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQA 425 (520)
T ss_pred -----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHH
Confidence 012233349999999999999999999999 79999999999998888889999999999999
Q ss_pred HHHHHHH
Q 013087 348 AMKALKN 354 (449)
Q Consensus 348 A~~A~~~ 354 (449)
-.+||.+
T Consensus 426 Yi~AIsa 432 (520)
T KOG0129|consen 426 YIKAISA 432 (520)
T ss_pred HHHHHhh
Confidence 9999985
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.28 E-value=8.5e-11 Score=114.12 Aligned_cols=76 Identities=24% Similarity=0.526 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
-.++||||++|+.++++.+|..+|+.||.|.+|.++. ++++|||.+....+|.+|+.+|+...+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3578999999999999999999999999999999965 5689999999999999999999999999999999998
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
..
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 64
No 109
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=7.7e-12 Score=107.66 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.1
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..||+.|||.+|.|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999954 9999999999999999999999999999999999987
Q ss_pred CC
Q 013087 374 AD 375 (449)
Q Consensus 374 ~~ 375 (449)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.8e-11 Score=85.77 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=55.6
Q ss_pred HHHHHHHHh----cCCCEEEEE-EecCCCC--CCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 133 DDDLRHFCK----SIGEVTEVR-IMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 133 ~~~l~~~f~----~~G~v~~v~-i~~~~~t--g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999996 7777766 899999999999999999999999999999999986
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=5.1e-11 Score=80.52 Aligned_cols=56 Identities=41% Similarity=0.673 Sum_probs=51.1
Q ss_pred HHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 136 LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 136 l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
|+++|++||.|..|.+.... +++|||+|.+.++|.+|++.|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998763 589999999999999999999999999999999875
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.24 E-value=5.6e-11 Score=113.76 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTE-VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
.+..|||..||..++..++.++|...-.|++ |.|.+.+ +++.++-|||.|..++++.+|+...+.+.+..+.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3568999999999999999999998888887 5555554 4899999999999999999999877888888899999754
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.7e-12 Score=110.36 Aligned_cols=85 Identities=19% Similarity=0.445 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
++...|||..|.+-+|.++|.-+|+.||.|.+|.++++..||.+.-||||+|.+.+++.+|.-.|++..|..+.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 013087 197 QAKHR 201 (449)
Q Consensus 197 ~~~~~ 201 (449)
++-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 75443
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.24 E-value=7.5e-11 Score=112.89 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=111.9
Q ss_pred cccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCC----CcccC------
Q 013087 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP----KFKLD------ 271 (449)
Q Consensus 202 ~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~----~~~~~------ 271 (449)
+.++..+++.+..+++++|...- +....+..+ .......|.++|.|...+.+..|++....- .+.+.
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 34456667777788888887554 555555554 344455889999999999999997654421 00000
Q ss_pred --CCCCeeeeCC--------------CCCc------cccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEE-EEecCC
Q 013087 272 --DNAPTVSWAD--------------PRNA------ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPA 328 (449)
Q Consensus 272 --~~~~~~~~~~--------------~~~~------~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~ 328 (449)
.......... ++.. .......+.+|||..||..+++.++.++|...-.|++ |.|-+.
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 0000000000 0000 0011222689999999999999999999998878887 666666
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 329 ~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
+.+.. ++.|||.|...+++..|+..-+.+.++.|.|+|.-.
T Consensus 471 P~~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 471 PTDLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred Ccccc-cchhhheeccccccchhhhcccccccCceEEEeech
Confidence 55554 899999999999999999877788888899998764
No 115
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.4e-11 Score=104.62 Aligned_cols=85 Identities=20% Similarity=0.458 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.-+++|+|||..||....+.+|.++|-.||.|.+.+++.|+.|+.++.|+||.|.++.+|+.||..|||..|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
.-+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 76554
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=6.7e-11 Score=99.06 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=74.8
Q ss_pred cEEEEcCCCcCCCHHHHHH----HHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 294 KALYVKNLPKDITQDRLKE----LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~----~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
.+|||.||...+..++|+. +|++||.|..|...+.. +.||-|||.|.+.+.|..|+++|+|+.|.|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999888 99999999999987653 4489999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 013087 370 AKPQADQKTS 379 (449)
Q Consensus 370 a~~~~~~~~~ 379 (449)
|+.+..-..+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9987765444
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=3.7e-11 Score=107.18 Aligned_cols=143 Identities=22% Similarity=0.283 Sum_probs=115.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC----CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSI----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.-.|.+++||+++|+.++..||..- |-+..|.++..++ |+..|-|||.|..++.|+.||. .|...|.-|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 3468899999999999999999632 3456777777766 9999999999999999999997 45555555555443
Q ss_pred ec-------------------------------------ccccccccCCCCCCCCHHHHHHHHHhhCCCcEE--EEEecC
Q 013087 195 AA-------------------------------------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS--IELVKD 235 (449)
Q Consensus 195 ~~-------------------------------------~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~--~~~~~~ 235 (449)
++ ..+.+|.+++||+..+.++|..+|..|...|.. +.++.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 32 245688999999999999999999999886766 55555
Q ss_pred CCCCCCCeeEEEEecCCHHHHHHHHHHcCC
Q 013087 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (449)
Q Consensus 236 ~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (449)
+..++..|-|||+|.+.+.|..|..+.++
T Consensus 318 -N~qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 318 -NGQGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred -cCCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 57889999999999999999988877665
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=7.2e-12 Score=103.36 Aligned_cols=143 Identities=24% Similarity=0.321 Sum_probs=120.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.++..+||||.||...++++.|.++|-+.|+|..|.|..+++ +..+ ||||.|.++.....|+..+||..+.++.|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345678999999999999999999999999999999988877 6666 99999999999999999999999999988753
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
T Consensus 83 -------------------------------------------------------------------------------- 82 (267)
T KOG4454|consen 83 -------------------------------------------------------------------------------- 82 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeeCCCCCccccccccccEEEEcC----CCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHH
Q 013087 275 PTVSWADPRNAESSAASQVKALYVKN----LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350 (449)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~ 350 (449)
++.++ |...++.+.+...|+..|.+..+++..+.+ +.++.++||.+......-.
T Consensus 83 ---------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 83 ---------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred ---------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcH
Confidence 23333 555688899999999999999999999988 4448899999987777777
Q ss_pred HHHHcCCceeC
Q 013087 351 ALKNTEKYEID 361 (449)
Q Consensus 351 A~~~lng~~i~ 361 (449)
++....+..+.
T Consensus 141 ~~~~y~~l~~~ 151 (267)
T KOG4454|consen 141 ALDLYQGLELF 151 (267)
T ss_pred HhhhhcccCcC
Confidence 77765554443
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.9e-11 Score=104.06 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=79.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.+.|||.-|.+-+|.++|.-+|+.||.|..|.|+++..++-+-.||||+|.+.+++.+|.=+|++..|+.|+|.|.|+.+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
-..
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 554
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=5.1e-11 Score=117.51 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=135.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...++|||++||+..+++.+|+..|..+|.|..|.|-.-+. +.-..|+||.|.+...+-+|...+.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 35678999999999999999999999999999999877654 66667999999999999999887877776544443322
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCC
Q 013087 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (449)
Q Consensus 196 ~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (449)
...
T Consensus 448 G~~----------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 448 GQP----------------------------------------------------------------------------- 450 (975)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred eeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
....++.++|++|+..+....|...|..||.|..|.+-.. ..||+|.|.+...|..|+..|
T Consensus 451 -------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 451 -------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred -------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHH
Confidence 0111278999999999999999999999999999888654 359999999999999999999
Q ss_pred CCceeCC--eEeEEEeCCCCCC
Q 013087 356 EKYEIDG--QVLDCSLAKPQAD 375 (449)
Q Consensus 356 ng~~i~g--r~l~v~~a~~~~~ 375 (449)
-|..|++ ++|+|.|+.+...
T Consensus 512 rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hcCcCCCCCcccccccccCCCC
Confidence 9999987 7899999987554
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=3.3e-10 Score=93.24 Aligned_cols=83 Identities=30% Similarity=0.570 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
.....++|..||..+-+..|..+|.+| |.|..+++-+++.||.++|||||+|.+++.|.=|.+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999988 8899999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 122
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=6.8e-10 Score=105.63 Aligned_cols=153 Identities=25% Similarity=0.492 Sum_probs=121.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+.....|||++||..+++..+++++..||.+....++.+..+|.++||||.+|.+......|+..|||..+.+++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccccccc----------ccCCCCC-----------------CCCH-------------HHHHHHHHhhCCCcEEEEEec
Q 013087 195 AAQAKHRL----------FIGNVPR-----------------NWGE-------------DDMRKAVTKIGPGVISIELVK 234 (449)
Q Consensus 195 ~~~~~~~~----------~v~~lp~-----------------~~~~-------------~~l~~~f~~~g~~v~~~~~~~ 234 (449)
.+...... .+..|+. -++. ++++..+.+||. |..|.+.+
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr 443 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPR 443 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCC
Confidence 76432110 0111111 1111 334556678887 88888877
Q ss_pred C-C-CCCCCCeeEEEEecCCHHHHHHHHHHcCCCCc
Q 013087 235 D-P-QNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (449)
Q Consensus 235 ~-~-~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (449)
+ . .......|.-||+|.+..++++|++.|.+.++
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 6 2 22334557789999999999999999999754
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=3.8e-10 Score=92.91 Aligned_cols=80 Identities=21% Similarity=0.474 Sum_probs=75.5
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcC-CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~-G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
..++|..+|..+.+..|..+|.+| |.|..+++-+++.||.++|||||+|++.+.|.-|-..||+.-|.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 678999999999999999999998 7788899989999999999999999999999999999999999999999999876
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 5
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=9.1e-10 Score=97.54 Aligned_cols=76 Identities=28% Similarity=0.510 Sum_probs=69.2
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH-cCCceeCCeEeEEEe
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN-TEKYEIDGQVLDCSL 369 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~-lng~~i~gr~l~v~~ 369 (449)
....+|||++|-..+++.+|+++|.+||.|..+++... +++|||+|.+.+.|..|..+ +|...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34589999999889999999999999999999999887 67999999999999888876 567779999999999
Q ss_pred CCC
Q 013087 370 AKP 372 (449)
Q Consensus 370 a~~ 372 (449)
+.+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 998
No 125
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=8.7e-10 Score=99.88 Aligned_cols=83 Identities=25% Similarity=0.589 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
...+|||++||.++++.+|+++|.+||.|..+.++.+..+.+.+||+||.|.+.+.+.+++. ..-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999999997 78889999999999887
Q ss_pred cccc
Q 013087 198 AKHR 201 (449)
Q Consensus 198 ~~~~ 201 (449)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 6543
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.98 E-value=6.1e-10 Score=94.36 Aligned_cols=172 Identities=11% Similarity=0.190 Sum_probs=128.7
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 120 SEVYLGGIPHDASDDD-L--RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~-l--~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
-.+++.++-..+..+- | ...|+.+-.+....++++.. +..++++|+.|.....-.++-..-+++.+.-+.|++...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3456666655555444 3 57777777777777777765 788899999998888777777666666665555544322
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCe
Q 013087 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (449)
Q Consensus 197 ~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (449)
+.- . ....
T Consensus 176 tsw----e--------------------------------------------------------------------dPsl 183 (290)
T KOG0226|consen 176 TSW----E--------------------------------------------------------------------DPSL 183 (290)
T ss_pred ccc----C--------------------------------------------------------------------Cccc
Confidence 110 0 0000
Q ss_pred eeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
+ .......+||.+.|...++++.|-..|.+|-.-...++++++-+++++||+||.|.+..++.+|++.|+
T Consensus 184 ~----------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 184 A----------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred c----------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 0 111123789999999999999999999999888889999999999999999999999999999999999
Q ss_pred CceeCCeEeEEEeCCCCC
Q 013087 357 KYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 357 g~~i~gr~l~v~~a~~~~ 374 (449)
|..++.|.|.+.-..-+.
T Consensus 254 gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccchhHhhhhhHHh
Confidence 999999999887655444
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.3e-09 Score=102.28 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
....++.|||.+|...+...+|+.+|++||.|+..+++.+-.+...+.|+||++.+.++|.+||..|+...|+|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 35568899999999999999999999999999999999998777889999999999999999999999999999999999
Q ss_pred ecc
Q 013087 195 AAQ 197 (449)
Q Consensus 195 ~~~ 197 (449)
.++
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 876
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=7.1e-09 Score=86.15 Aligned_cols=89 Identities=24% Similarity=0.374 Sum_probs=74.0
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecC-CCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC---CeEeEE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP-AKPGQERSRYGFVHFAERSSAMKALKNTEKYEID---GQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~-~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~---gr~l~v 367 (449)
..++|||.+||.++..-+|..+|..|-..+.+.|.. ++..+.++.+|||+|.+..+|.+|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 359999999999999999999999986666655544 3334456789999999999999999999999997 789999
Q ss_pred EeCCCCCCCCCCC
Q 013087 368 SLAKPQADQKTSG 380 (449)
Q Consensus 368 ~~a~~~~~~~~~~ 380 (449)
.+|+...++..+.
T Consensus 113 ElAKSNtK~kr~k 125 (284)
T KOG1457|consen 113 ELAKSNTKRKRRK 125 (284)
T ss_pred eehhcCcccccCC
Confidence 9999877655443
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.95 E-value=1.4e-09 Score=102.05 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=76.1
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
.-.+.|||.+|+..+...+|+.+|++||+|+-+.++.+.-+.-.++|+||++.+.++|.+||..||...|.||.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 33589999999999999999999999999999999888776666999999999999999999999999999999999998
Q ss_pred CCC
Q 013087 371 KPQ 373 (449)
Q Consensus 371 ~~~ 373 (449)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 753
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=1.1e-08 Score=75.87 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=72.2
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhc--CCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC----CeEeEE
Q 013087 294 KALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID----GQVLDC 367 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~--~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~----gr~l~v 367 (449)
++|.|+|||...|.++|.+++.. .|....+.++.|..+..+.|||||.|.+++.|.+-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 366778999999999999999999999999999999999999886 467899
Q ss_pred EeCCCCC
Q 013087 368 SLAKPQA 374 (449)
Q Consensus 368 ~~a~~~~ 374 (449)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9988654
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=6.8e-08 Score=84.12 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=75.2
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|+|.|||+.++.++|+++|..||.+..+-+.+++.+.+ .|.|-|.|...++|.+|++.+|+..++|+.+.+....+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 7899999999999999999999999999999988887666 899999999999999999999999999999999987765
Q ss_pred CCC
Q 013087 374 ADQ 376 (449)
Q Consensus 374 ~~~ 376 (449)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 543
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=7.2e-10 Score=109.17 Aligned_cols=134 Identities=24% Similarity=0.353 Sum_probs=116.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..+++||+||+..+.+.+|...|..+|.+..+.+....+.++.+|+|||.|..++.+.+||....++.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h---------
Confidence 456899999999999999999999999998888876667799999999999999999999985554444 3
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCC
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (449)
+..++|.+.|+..|.+.++.++.++|. +.+.+++. ...++.+|.+||.|.+...+.++......
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt--~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVT--VRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhh--hhccccccceeccCCCcchhhhhcccchh
Confidence 567899999999999999999999998 88887666 46788999999999999999988766554
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.77 E-value=1.4e-09 Score=97.67 Aligned_cols=211 Identities=15% Similarity=0.181 Sum_probs=131.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCC---CCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~t---g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..|.|.||.+++|.++++.+|...|.|..+.|+..... ......|||.|.+...+.-|-. |.++.+-++.|.|.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 37999999999999999999999999999999885432 3455689999999999998886 8888888888877654
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCe
Q 013087 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (449)
Q Consensus 197 ~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (449)
... + .+. +.+|..++..-....++.. .| |.+.. ..+...++...
T Consensus 87 ~~~--------~---~p~--r~af~~l~~~navprll~p-------dg---~Lp~~-------------~~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE--------V---IPD--RFAFVELADQNAVPRLLPP-------DG---VLPGD-------------RPLTKINHSPN 130 (479)
T ss_pred CCC--------C---Ccc--HHHHHhcCcccccccccCC-------CC---ccCCC-------------CccccccCCcc
Confidence 311 1 011 1134333321111111100 00 00000 00101111111
Q ss_pred eeeCCCCCccc----cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 277 VSWADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 277 ~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
.-...|...+. ....-.++|+|.+|+..+...++.+.|..+|.|...++--... ..+|-|.|........|+
T Consensus 131 ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 131 AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHH
Confidence 11111111100 1111137899999999999999999999999998877754432 457889999999999999
Q ss_pred HHcCCceeCCeEeEEEeCCC
Q 013087 353 KNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 353 ~~lng~~i~gr~l~v~~a~~ 372 (449)
. ++|+.+.-...++..-+|
T Consensus 207 r-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred H-hcchhhhhhhhhhhhcCc
Confidence 9 477666644444444444
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=2.8e-08 Score=88.30 Aligned_cols=75 Identities=32% Similarity=0.552 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh-CCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~~ 196 (449)
..++|||++|-..+++.+|+++|.+||.|..|+++..+ ++|||+|.+..+|..|...+ +...|.|++|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 45799999998899999999999999999999998754 59999999999999988765 445579999999998
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 76
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=9e-08 Score=71.00 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc----CeeEEE
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK----GKKIKC 193 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~----g~~l~v 193 (449)
+||.|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988864 366777888888888999999999999999999999999999985 345566
Q ss_pred eecc
Q 013087 194 SAAQ 197 (449)
Q Consensus 194 ~~~~ 197 (449)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=5.1e-08 Score=85.25 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=77.1
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
.....+||+|+.+.+|.+.|..+|+.||.|..|.|+.++..+.++||+||+|.+.+.+..|+. |++..|.|+.|.|++.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 334899999999999999999999999999999999999998899999999999999999999 9999999999999998
Q ss_pred CCC
Q 013087 371 KPQ 373 (449)
Q Consensus 371 ~~~ 373 (449)
+-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=9.4e-08 Score=83.22 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|+|.|||+.++..||+++|..||.+..+-+-.++. |.+.|.|-|.|...++|..|++.+++..+.|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 447899999999999999999999999888888877776 9999999999999999999999999999999999887654
Q ss_pred c
Q 013087 198 A 198 (449)
Q Consensus 198 ~ 198 (449)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.3e-08 Score=94.40 Aligned_cols=72 Identities=31% Similarity=0.468 Sum_probs=66.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
.....+|+|-|||.+++.++|+.+|+.||.|..|+.-+.+ +|.+||+|-+..+|.+|+++||+..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4445899999999999999999999999999998776665 78999999999999999999999999999998
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=3e-08 Score=84.30 Aligned_cols=74 Identities=23% Similarity=0.413 Sum_probs=68.0
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
..+||++||+.+.+.+|..||..||.|.+|.+. .||+||+|.+..+|..|+.-||+..|.|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 578999999999999999999999999999886 479999999999999999999999999988999998864
Q ss_pred CC
Q 013087 374 AD 375 (449)
Q Consensus 374 ~~ 375 (449)
..
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 43
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.65 E-value=5.8e-08 Score=91.59 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+|||+|||.+++..+|+++|+.||.|+...|......++..+||||+|.+..++..||. .+-..|.+++|.|..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 4569999999999999999999999999999887755335555999999999999999998 5688889999988643
No 141
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.63 E-value=2.7e-08 Score=84.66 Aligned_cols=74 Identities=32% Similarity=0.407 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCC--------CCccc----EEEEEecCHHHHHHHHHHhCCCc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS--------GEAKG----YAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~t--------g~~~g----~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
....|||++||+.+...-|+++|+.||.|-.|.|-....+ |.++. -|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999877654 33333 38999999999999999999999
Q ss_pred ccCeeE
Q 013087 186 LKGKKI 191 (449)
Q Consensus 186 i~g~~l 191 (449)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999764
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.62 E-value=1.1e-07 Score=84.53 Aligned_cols=81 Identities=30% Similarity=0.382 Sum_probs=73.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEE--------EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--------~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~ 364 (449)
...|||.|||.++|.+++.++|++||.|. .|.|.++..+.. +|-|.|.|-..+++..|++.|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 46799999999999999999999999885 378888887555 999999999999999999999999999999
Q ss_pred eEEEeCCCCC
Q 013087 365 LDCSLAKPQA 374 (449)
Q Consensus 365 l~v~~a~~~~ 374 (449)
|+|..|+-+.
T Consensus 213 ~rVerAkfq~ 222 (382)
T KOG1548|consen 213 LRVERAKFQM 222 (382)
T ss_pred EEEehhhhhh
Confidence 9999997544
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=2.6e-07 Score=64.80 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=49.8
Q ss_pred cEEEEcCCCcCCCHH----HHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 294 KALYVKNLPKDITQD----RLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e----~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
..|+|.|||.+.+.. .|+.++..||- |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999888764 46788889974 77762 3689999999999999999999999999999999
Q ss_pred eCCCC
Q 013087 369 LAKPQ 373 (449)
Q Consensus 369 ~a~~~ 373 (449)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=3.6e-08 Score=83.77 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+....+||.+.|...++.+.|...|.+|-.....++++++.||+++||+||.|.+..++..|+..|+|..++.+.|+...
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=83.26 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=72.6
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||.||...++++.|.++|-+.|.|..|.|+..+++.. + ||||.|.+.-...-|+..+||..+.++.|.|.+-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 38999999999999999999999999999999999988766 5 999999999999999999999999999999888654
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=1.6e-08 Score=91.80 Aligned_cols=158 Identities=16% Similarity=0.296 Sum_probs=124.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 013087 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (449)
Q Consensus 200 ~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (449)
+.++++||.+..+..++..+|.....+...-.++ ..+|+||.+.+...|.++++.+++ +..+.+....+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sg-k~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSG-KVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhch-hhhhcCceeeccc
Confidence 3589999999999999999997654322222222 358999999999999999999987 4567777777776
Q ss_pred CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.-+.... ++.+-|+|+|+...++.|..++..||.|..|.......- .-..-|+|.+.+.++.||..|||..
T Consensus 73 sv~kkqr------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKKQR------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHHHH------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 6665544 367999999999999999999999999998866433211 1234478999999999999999999
Q ss_pred eCCeEeEEEeCCCCCC
Q 013087 360 IDGQVLDCSLAKPQAD 375 (449)
Q Consensus 360 i~gr~l~v~~a~~~~~ 375 (449)
+....++|.|-.....
T Consensus 144 ~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 144 LENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhhhhhcccCchhhh
Confidence 9999999999765444
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=9.6e-08 Score=83.55 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...+.+||+|+.+.+|.++|..+|+.||.|..|.+..++.++.++||+||+|.+.+.+..|+. |++..|.|+.|.|.+-
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999998 9999999999998765
Q ss_pred c
Q 013087 197 Q 197 (449)
Q Consensus 197 ~ 197 (449)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 148
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.54 E-value=2.6e-07 Score=81.93 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=68.7
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCc--EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE-eEEEeC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-LDCSLA 370 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~--v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~-l~v~~a 370 (449)
.++||+||-+.+|+++|.+.+...|. +.+++++.++.++.+||||+|...+....++.+..|-.+.|.|.. +.+.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 78999999999999999999887774 778899999999999999999999999999999999999998854 555554
Q ss_pred C
Q 013087 371 K 371 (449)
Q Consensus 371 ~ 371 (449)
+
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 4
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=82.78 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=78.9
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEE--------EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--------~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
.....+|||-+||..+++++|.++|.+||.|. .|.|-+++.+...|+-|.|+|.+...|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34458999999999999999999999999885 3778889999999999999999999999999999999999
Q ss_pred CeEeEEEeCCCCCCC
Q 013087 362 GQVLDCSLAKPQADQ 376 (449)
Q Consensus 362 gr~l~v~~a~~~~~~ 376 (449)
+..|+|.+|..+...
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999876653
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=5.3e-07 Score=63.26 Aligned_cols=70 Identities=23% Similarity=0.446 Sum_probs=48.7
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 120 SEVYLGGIPHDASDDDLR----HFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~----~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+.|+|.|||.+.+...|+ +++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999887754 5666775 566652 3689999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=3.5e-07 Score=88.61 Aligned_cols=86 Identities=24% Similarity=0.325 Sum_probs=76.3
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCC---CCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~---~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
.+.++.|||+||++.++++.|...|..||.|..|+|+..+. ....+.++||-|-+..+|.+|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45578999999999999999999999999999999987552 444577999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 013087 367 CSLAKPQAD 375 (449)
Q Consensus 367 v~~a~~~~~ 375 (449)
+-|++.-.-
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999975443
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=7.8e-07 Score=86.28 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCC---CCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD---SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
.+..+.|||+||++.+++..|...|..||+|..|+|+.-+. ..+.+-++||.|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999987532 245677999999999999999999999999999999
Q ss_pred Eeecc
Q 013087 193 CSAAQ 197 (449)
Q Consensus 193 v~~~~ 197 (449)
+.|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=73.28 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCC---CCCCC--------
Q 013087 265 NPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA---KPGQE-------- 333 (449)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~---~~~~~-------- 333 (449)
...+.+..-.-+|.+..|-.......-++++|.+.|||.+-.-+.|.++|+.||.|..|+|+.. +...+
T Consensus 203 S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~ 282 (484)
T KOG1855|consen 203 SSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE 282 (484)
T ss_pred cceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh
Confidence 3444555555555555555554455557799999999999999999999999999999999876 22111
Q ss_pred --cccEEEEEeCCHHHHHHHHHHcCC
Q 013087 334 --RSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 334 --~kg~afV~F~~~~~A~~A~~~lng 357 (449)
.+-+|||+|...+.|.+|.+.||.
T Consensus 283 ~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 283 LQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 145899999999999999998764
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.22 E-value=2.8e-06 Score=64.77 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=45.7
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC-----CceeCCeEeEEE
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE-----KYEIDGQVLDCS 368 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln-----g~~i~gr~l~v~ 368 (449)
..|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|..|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999998763 489999999999999998865 345666666665
Q ss_pred e
Q 013087 369 L 369 (449)
Q Consensus 369 ~ 369 (449)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 5
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.12 E-value=2.8e-06 Score=76.49 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCe
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVT--------EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 189 (449)
...+|||.+||..++..+|..+|.+||.|. .|+|.+++.|+..++-|.|.|.+...|+.|+.-+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999876 488899999999999999999999999999999999999999
Q ss_pred eEEEeeccccc
Q 013087 190 KIKCSAAQAKH 200 (449)
Q Consensus 190 ~l~v~~~~~~~ 200 (449)
.|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998776544
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=1e-05 Score=61.75 Aligned_cols=70 Identities=29% Similarity=0.526 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC-----cccCeeEEE
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC-----ELKGKKIKC 193 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~-----~i~g~~l~v 193 (449)
++.|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|+.|+..+.-. .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4679999999999999999999999999999986643 38999999999999999977654 344544444
Q ss_pred e
Q 013087 194 S 194 (449)
Q Consensus 194 ~ 194 (449)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=1.5e-05 Score=70.75 Aligned_cols=88 Identities=24% Similarity=0.472 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHhcCCCEEEEEEecCCCC-CCcccE--EEEEecCHHHHHHHHHHhCCCcccCee
Q 013087 120 SEVYLGGIPHDASDDDL------RHFCKSIGEVTEVRIMKGKDS-GEAKGY--AFVTFRTKELASQAIEELNSCELKGKK 190 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l------~~~f~~~G~v~~v~i~~~~~t-g~~~g~--afV~F~~~~~A~~Al~~l~g~~i~g~~ 190 (449)
.-+||-+||+.+..+++ .++|.+||.|..|.+-+.-.+ ....+. .||.|.+.++|.+||...+|..+.||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45799999998887772 389999999999888654321 122222 499999999999999999999999999
Q ss_pred EEEeecccc-cccccCCC
Q 013087 191 IKCSAAQAK-HRLFIGNV 207 (449)
Q Consensus 191 l~v~~~~~~-~~~~v~~l 207 (449)
|+..+...+ ++.|++|+
T Consensus 195 lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 195 LKATYGTTKYCTSYLRNA 212 (480)
T ss_pred EeeecCchHHHHHHHcCC
Confidence 999987654 33444443
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.94 E-value=2.7e-05 Score=69.14 Aligned_cols=82 Identities=20% Similarity=0.481 Sum_probs=65.6
Q ss_pred cccEEEEcCCCcCCCHHHH------HHHHhcCCcEEEEEecCCCCC-CCcccEE--EEEeCCHHHHHHHHHHcCCceeCC
Q 013087 292 QVKALYVKNLPKDITQDRL------KELFAHHGKITKVVIPPAKPG-QERSRYG--FVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L------~~~F~~~G~v~~v~i~~~~~~-~~~kg~a--fV~F~~~~~A~~A~~~lng~~i~g 362 (449)
+.+-+||-+||+.+-.+++ .++|.+||.|..|.|-+.... .+..+.+ ||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3478899999988877662 579999999999988765421 1112223 999999999999999999999999
Q ss_pred eEeEEEeCCCC
Q 013087 363 QVLDCSLAKPQ 373 (449)
Q Consensus 363 r~l~v~~a~~~ 373 (449)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998764
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.3e-05 Score=72.63 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=65.5
Q ss_pred cEEEEcCCCcCCC------HHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC-CeEeE
Q 013087 294 KALYVKNLPKDIT------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLD 366 (449)
Q Consensus 294 ~~l~V~nLp~~~t------~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~-gr~l~ 366 (449)
.+|+|.|+|---. ..-|.++|+++|+|+.+.++.+..++. +||.|++|.+..+|..|++.|||+.|. .+.+.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 8999999984322 244678999999999999999999885 999999999999999999999999986 57777
Q ss_pred EEeCC
Q 013087 367 CSLAK 371 (449)
Q Consensus 367 v~~a~ 371 (449)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 76643
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.85 E-value=0.00026 Score=63.34 Aligned_cols=77 Identities=21% Similarity=0.417 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
-.+||+||-|.+|.+||.+.+...| .+.+++++.++..|.++|||.|...+..+.++.++.|-.+.|+|+.-.|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999999999999999998777 4788899999888999999999999999999999999999999987666433
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=8.5e-05 Score=48.78 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=42.6
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
+.|-|.+.+....+ .|..+|..||.|+.+.+... ..+.||+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56888888866554 45568889999999999733 469999999999999986
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.73 E-value=2e-05 Score=71.68 Aligned_cols=80 Identities=24% Similarity=0.549 Sum_probs=73.0
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 119 GSEVY-LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 119 ~~~l~-v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++| |.+|+++++.++|+.+|..+|.|..+++..++.++.++|||||.|.+...+..++.. +...+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999986 8888999999998776
Q ss_pred cc
Q 013087 198 AK 199 (449)
Q Consensus 198 ~~ 199 (449)
+.
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 54
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.71 E-value=2e-05 Score=67.62 Aligned_cols=71 Identities=21% Similarity=0.423 Sum_probs=62.0
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCC--------CCcc----cEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG--------QERS----RYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~--------~~~k----g~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
-.||+.+||+.+.-..|+++|+.||.|-.|.+.+.... +.++ .-|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999999876654 2212 25789999999999999999999999
Q ss_pred CeE
Q 013087 362 GQV 364 (449)
Q Consensus 362 gr~ 364 (449)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.67 E-value=0.00034 Score=52.43 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEE-ecCCC------CCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE-e
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVV-IPPAK------PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-L 365 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~-i~~~~------~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~-l 365 (449)
..|.|-+.|.. ....|.+.|++||.|.+.. +.++. ..........|+|.++.+|.+||+. ||..|.|.. +
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 66888899877 6677889999999998875 21110 0111146899999999999999995 999999865 4
Q ss_pred EEEeCCC
Q 013087 366 DCSLAKP 372 (449)
Q Consensus 366 ~v~~a~~ 372 (449)
-|.+.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777643
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00013 Score=47.89 Aligned_cols=52 Identities=15% Similarity=0.490 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHH
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al 178 (449)
+.|-|.+.+++..+ .|..+|..||.|..+.+.. .....||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57889999988765 4556888999999998853 3459999999999999985
No 166
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.65 E-value=1.6e-05 Score=72.79 Aligned_cols=137 Identities=20% Similarity=0.347 Sum_probs=105.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-ccCeeEEEeecccc
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQAK 199 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~-i~g~~l~v~~~~~~ 199 (449)
.+|++||.+.++..+|..+|.....-.+-.++. ..||+||...+..-|.+|++.++|+. +.|+.+.|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999997652212112221 34799999999999999999999875 88999999887654
Q ss_pred ----cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCc
Q 013087 200 ----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (449)
Q Consensus 200 ----~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (449)
+.+.|.|+|+....+-+..++..+|. +..+...... .-.-..-|.|.+.+.+..++..+++..+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt~----~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNTD----SETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhccc----hHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 57899999999999999999999998 7766553320 0111123578888888999999987644
No 167
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.62 E-value=9.3e-05 Score=70.91 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=66.1
Q ss_pred ccccccEEEEcCCCcCCCHHHHHHHHh-cCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCcee---CCeE
Q 013087 289 AASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQV 364 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i---~gr~ 364 (449)
....++.|||.||-.-+|.-+|+.++. .+|.|+...|-+- |..|||.|.+.++|.+.+.+|||..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445569999999999999999999999 5666777633222 56899999999999999999999887 4688
Q ss_pred eEEEeCCCCC
Q 013087 365 LDCSLAKPQA 374 (449)
Q Consensus 365 l~v~~a~~~~ 374 (449)
|.+.|+..-.
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9999987544
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=0.00028 Score=60.79 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=61.2
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC----ceeCCeEeEEEe
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK----YEIDGQVLDCSL 369 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng----~~i~gr~l~v~~ 369 (449)
..|||.||+.-++-+.|...|+.||.|....+..|..... .+-++|.|...-.|.+|+..++- ....+++.-|.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~-t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP-TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc-cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 5799999999999999999999999999877776655444 67899999999999999998862 333455555544
Q ss_pred CC
Q 013087 370 AK 371 (449)
Q Consensus 370 a~ 371 (449)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 33
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.53 E-value=0.00017 Score=69.25 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc---cCeeEEE
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---KGKKIKC 193 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i---~g~~l~v 193 (449)
.+..|+|.||-.-.|..+|+.++. .+|.|...+| | +-+..|||.|.+.++|...+.+|||..| +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 467899999999999999999998 6777877754 2 2456899999999999999999999998 5688888
Q ss_pred eeccc
Q 013087 194 SAAQA 198 (449)
Q Consensus 194 ~~~~~ 198 (449)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 88754
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.52 E-value=0.00026 Score=61.95 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCCCCc-ccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 307 QDRLKELFAHHGKITKVVIPPAKPGQER-SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 307 ~e~L~~~F~~~G~v~~v~i~~~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
+++++.-+++||.|..|.|+..+...-. ---.||+|...++|.+|+-.|||+.|+||.++..|-.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4678899999999999888765432111 12579999999999999999999999999999888653
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.49 E-value=0.00047 Score=54.83 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 308 e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
..|.+.|..||.|+-||+.-+ .-+|+|.+-+.|.+|+. ++|..|+|+.|+|++.++.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 467888999999999988754 57999999999999999 7999999999999998764
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00049 Score=65.70 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCC--CHH----HHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc-Ce
Q 013087 117 PHGSEVYLGGIPHDA--SDD----DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GK 189 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~--t~~----~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~-g~ 189 (449)
--.+.|+|.|+|.-- ..+ -|..+|+++|+|..+.+..+.. |.++||.|++|.+..+|..|++.|||..|. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 346789999999522 222 2568999999999999998887 559999999999999999999999999875 45
Q ss_pred eEEEee
Q 013087 190 KIKCSA 195 (449)
Q Consensus 190 ~l~v~~ 195 (449)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666653
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.36 E-value=8.4e-05 Score=64.05 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=53.5
Q ss_pred HHHHHHHh-cCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 308 DRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 308 e~L~~~F~-~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
++|...|+ +||.|+.+.|..+-.-.. +|-+||.|...++|.+|+..||+.++.|++|.+.+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 55666666 899999987765543333 78999999999999999999999999999999999764
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.001 Score=49.89 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=52.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCC-------CCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK-------DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
.+.|.|-+.|+. ....|..+|++||.|.+..-.... ..........|.|.++.+|.+||. .||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 466999999998 456788999999999887511000 001233478999999999999997 89999998655
Q ss_pred -EEeecc
Q 013087 192 -KCSAAQ 197 (449)
Q Consensus 192 -~v~~~~ 197 (449)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 455553
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0015 Score=52.09 Aligned_cols=73 Identities=26% Similarity=0.362 Sum_probs=53.1
Q ss_pred CCCCeEEEcCCCC-----CCCHH----HHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc
Q 013087 117 PHGSEVYLGGIPH-----DASDD----DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187 (449)
Q Consensus 117 ~~~~~l~v~nLp~-----~~t~~----~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~ 187 (449)
++..||.|.=+.+ ..-.+ +|.+.|..||.|.-|+++.+ .-+|+|.+-.+|.+|+. ++|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 4556677665551 12222 56788999999999988764 67999999999999997 9999999
Q ss_pred CeeEEEeeccc
Q 013087 188 GKKIKCSAAQA 198 (449)
Q Consensus 188 g~~l~v~~~~~ 198 (449)
|+.|+|..-.+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999986543
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.25 E-value=0.00028 Score=65.10 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecC---CCC--CCc--------ccEEEEEecCHHHHHHHHHHhCCC
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG---KDS--GEA--------KGYAFVTFRTKELASQAIEELNSC 184 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~t--g~~--------~g~afV~F~~~~~A~~Al~~l~g~ 184 (449)
.+++|.+.|||.+-..+-|.++|..||.|..|+|+.- +.. +.. +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999876 222 222 346999999999999999976554
Q ss_pred cccCeeEEE
Q 013087 185 ELKGKKIKC 193 (449)
Q Consensus 185 ~i~g~~l~v 193 (449)
.-+-.-|+|
T Consensus 310 ~~wr~glkv 318 (484)
T KOG1855|consen 310 QNWRMGLKV 318 (484)
T ss_pred hhhhhcchh
Confidence 443333443
No 177
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0016 Score=61.83 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHH
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~ 180 (449)
.+.+||||++||.-++..+|..+|. -||-|..+-|-.|+.-+..+|-|-|.|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4578999999999999999999999 899999999999977799999999999999999999974
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.01 E-value=0.00094 Score=60.97 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=61.1
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCC---cccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE---RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~---~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..|.|.||.+++|.++++.||...|.|..++|+...+... ..-.|||.|.+...+..|.. |.+..|=++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 5899999999999999999999999999999987554322 23589999999999999988 5555555666655543
No 179
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.78 E-value=0.012 Score=56.46 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=54.9
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhc--CCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeEE
Q 013087 294 KALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDC 367 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~--~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~v 367 (449)
+.|.|+-||..+..++|+.+|.. |-.+++|.+-.+. --||+|.+..||..|.+.|. -..|.|++|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 77788999999999999999974 7788999886653 47999999999999998876 34567766543
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.76 E-value=0.0045 Score=54.45 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCEEEEEEecCCCCCCc-ccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEA-KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 133 ~~~l~~~f~~~G~v~~v~i~~~~~tg~~-~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
+++++.-+.+||.|..|.|...+..-.. .---||+|...++|.+|+-.|||..|.||.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3457788999999999999887542211 2257999999999999999999999999999876553
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.66 E-value=0.00095 Score=57.73 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=51.6
Q ss_pred HHHHHHHh-cCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 134 DDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 134 ~~l~~~f~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
++|...|+ +||+|..+++..+.. -.-.|-+||.|...++|.+|+..||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444555 899999997765533 4577899999999999999999999999999999887664
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.54 E-value=0.012 Score=39.61 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=44.7
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcC---CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 294 KALYVKNLPKDITQDRLKELFAHH---GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~---G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
..|+|+++. .++.++|+.+|..| .....|.-+.|. -|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 789999996 68889999999998 124577777763 5889999999999999865
No 183
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.022 Score=55.10 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcC----CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCee
Q 013087 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSI----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (449)
Q Consensus 116 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 190 (449)
-..+++|-|.||.| .+...+|.-+|+.| |.|.+|.|+.... |+. .|.-..+.|..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-Gke-------------------RM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GKE-------------------RMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hHH-------------------HhhhhcccCCh
Confidence 34578999999998 57889999998876 5899999987643 222 25555666665
Q ss_pred EEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCccc
Q 013087 191 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (449)
Q Consensus 191 l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (449)
+.+........-- .......+...+..+..|+. .....-||.|.|.+...|......+.+..+..
T Consensus 231 ~el~~~~e~~~~s--~sD~ee~~~~~~~kLR~Yq~-------------~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 231 KELFKPVEEYKES--ESDDEEEEDVDREKLRQYQL-------------NRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hhhccccccCccc--ccchhhhhhHHHHHHHHHHh-------------hhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 5433221110000 00000111122444444442 22344578899999999999999999876655
Q ss_pred CCCCCeeee
Q 013087 271 DDNAPTVSW 279 (449)
Q Consensus 271 ~~~~~~~~~ 279 (449)
.+..+-+.+
T Consensus 296 S~~~~DLRF 304 (650)
T KOG2318|consen 296 SANKLDLRF 304 (650)
T ss_pred ccceeeeee
Confidence 554444433
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.37 E-value=0.0099 Score=50.16 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=52.5
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhc-CCcE---EEEE--ecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC-----
Q 013087 294 KALYVKNLPKDITQDRLKELFAH-HGKI---TKVV--IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG----- 362 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~-~G~v---~~v~--i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g----- 362 (449)
.+|.|++||+.+|++++.+.++. ++.. ..+. .............|||.|.+.+++..-+..++|+.|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 78999999999999999997776 5554 2333 22222222223479999999999999999999977743
Q ss_pred eEeEEEeCCCC
Q 013087 363 QVLDCSLAKPQ 373 (449)
Q Consensus 363 r~l~v~~a~~~ 373 (449)
....|.+|.-+
T Consensus 88 ~~~~VE~Apyq 98 (176)
T PF03467_consen 88 YPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEE-SS-
T ss_pred cceeEEEcchh
Confidence 35677777653
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.26 E-value=0.025 Score=44.48 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=56.3
Q ss_pred cccEEEEcCCCcCCCH-HH---HHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 292 QVKALYVKNLPKDITQ-DR---LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~-e~---L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+..+|.|+=|..++.. ++ |...++.||.|.+|.+.- +..|.|.|.+..+|-+|+.+++. ...|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3478888766655543 44 455678899999998753 45899999999999999999887 667889999
Q ss_pred EeCC
Q 013087 368 SLAK 371 (449)
Q Consensus 368 ~~a~ 371 (449)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8854
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.19 E-value=0.027 Score=39.99 Aligned_cols=59 Identities=17% Similarity=0.349 Sum_probs=43.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g 183 (449)
|......+|. .|......||.++|+.||.|.= ..+.+ ..|||...+.+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3444556666 9999999999999999999874 44443 4899999999999999987653
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.10 E-value=0.036 Score=37.29 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSI---GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l 181 (449)
..|+|+++. +++.++|+.+|..| .....|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999984 57889999999998 235577777773 6899999999999999754
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.10 E-value=0.0054 Score=51.74 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=46.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-CCCE---EEEEEecCCCC--CCcccEEEEEecCHHHHHHHHHHhCCCcccCe
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKS-IGEV---TEVRIMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~t--g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 189 (449)
....|.||+||+++|++++...+.. ++.. ..+.......+ .....-|||.|.+.+++......++|..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999887776 5555 33331121111 12334699999999999999999999887543
No 189
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.08 E-value=0.002 Score=65.14 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=68.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
+.+||++||+..+++.+|+..|..+|.|..|.|-..+.+.- .-|+||.|.+...+-.|+..+.+..|..-.+++-+..+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e-sa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE-SAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc-cchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 68999999999999999999999999999999977755444 34999999999999999999999888776666666643
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.02 E-value=0.046 Score=38.87 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=41.2
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
...+|. .|..+-..||.++|+.||.|.-- .+.+ .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEE-EECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 566776 99999999999999999987543 3344 379999999999999999876
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.97 E-value=0.022 Score=48.17 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=46.7
Q ss_pred CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeEEEeCCCCC
Q 013087 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 306 t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~v~~a~~~~ 374 (449)
....|+++|..|+.+..+..++. -+-..|.|.+.++|.+|...|+ +..|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999998777766655 3468999999999999999999 999999999999995443
No 192
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.90 E-value=0.026 Score=56.58 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHh
Q 013087 170 TKELASQAIEEL 181 (449)
Q Consensus 170 ~~~~A~~Al~~l 181 (449)
+...+.+|++++
T Consensus 208 ~~~eiIrClka~ 219 (1102)
T KOG1924|consen 208 NLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.74 E-value=0.012 Score=51.05 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=62.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc----ccCeeEEEee
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE----LKGKKIKCSA 195 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~----i~g~~l~v~~ 195 (449)
..|+|.||..-++.+.|...|+.||+|....++.|.. ++..+-++|.|...-.|.+|+..+.-.- ..++..-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999999988888766 8899999999999999999998774322 3344444443
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.67 E-value=0.007 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=61.6
Q ss_pred cEEEEcCCCcCC-CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 294 KALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 294 ~~l~V~nLp~~~-t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
+.|-+.-.|+.+ +.++|..+|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 556666666654 569999999999999999886662 368999999999988888 699999999999999887
Q ss_pred CC
Q 013087 373 QA 374 (449)
Q Consensus 373 ~~ 374 (449)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.62 E-value=0.054 Score=37.12 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 304 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 304 ~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
.++-++|+..+..|+ -.+|+.++ .|| ||.|.+..+|.++....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999994 33444444 355 89999999999999999999988877654
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.39 E-value=0.0075 Score=54.58 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=64.0
Q ss_pred cEEEEcCCCcCCCHHHHH---HHHhcCCcEEEEEecCCCC--CCC-cccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 294 KALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKP--GQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~---~~F~~~G~v~~v~i~~~~~--~~~-~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+-+||-+|+..+-.+.+. ..|.+||.|..|.+..+.. ... .-.-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888888776655543 4889999999999988762 111 1235899999999999999999999999999999
Q ss_pred EeCCCCC
Q 013087 368 SLAKPQA 374 (449)
Q Consensus 368 ~~a~~~~ 374 (449)
++...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 9887653
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.38 E-value=0.13 Score=39.38 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=49.2
Q ss_pred CCeEEEcCC-CCCCCHHHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 119 GSEVYLGGI-PHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 119 ~~~l~v~nL-p~~~t~~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
+++|.|--. |.-++.++|..+...+- .|..++|+++. ..++-.+.+.|.+...|......+||+.++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444444 45555566666666554 47788898874 3366689999999999999999999998754
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.04 E-value=0.011 Score=53.53 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEecCCCC---CCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 119 GSEVYLGGIPHDASDDDLR---HFCKSIGEVTEVRIMKGKDS---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~t---g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
..-+||-+|+..+..+.+. .+|.+||.|..|.+..+..+ -....-+||+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888999887666654 68999999999998886521 11122489999999999999999999999999988
Q ss_pred Eeecccc
Q 013087 193 CSAAQAK 199 (449)
Q Consensus 193 v~~~~~~ 199 (449)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766544
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.01 E-value=0.25 Score=37.96 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=51.9
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g 362 (449)
..+.+-..|+.++.++|..+.+.+-. |..++|+++.. .++-.+.+.|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 45555566677777788777776644 77899988754 235688999999999999999999998875
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.69 E-value=0.089 Score=49.58 Aligned_cols=71 Identities=20% Similarity=0.400 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
+..++.|+|-.+|..+|..||..|+..| -.|..++|+++. -.++-.+.|.|.+.++|......+||+.+..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3448899999999999999999999865 458999999964 2355578999999999999999999998864
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.079 Score=47.15 Aligned_cols=73 Identities=23% Similarity=0.387 Sum_probs=55.1
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE-eEEEeCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-LDCSLAKP 372 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~-l~v~~a~~ 372 (449)
.=|.|-+.|+. .-..|..+|++||.|+......+ -.+-+|.|.+.-+|.+||.. ||..|+|.. |=|.-+..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 44566677654 34567889999999998877633 35899999999999999995 999998854 45666555
Q ss_pred CC
Q 013087 373 QA 374 (449)
Q Consensus 373 ~~ 374 (449)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.43 E-value=0.037 Score=54.61 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=64.7
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+......++||+|+...+..+-++.+...||.|..+.... |||..|..+..+.+|+..|+-..++|..|.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4444568999999999999999999999999998886653 8999999999999999999999999988877
Q ss_pred EeC
Q 013087 368 SLA 370 (449)
Q Consensus 368 ~~a 370 (449)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 664
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=0.15 Score=45.39 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCee-EEEeeccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQA 198 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~-l~v~~~~~ 198 (449)
.=|.|-++|+.-. .-|..+|.+||.|+...... +-.+-+|.|.+.-+|.+||. .||..|.|.. |-|..+..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 4567778887644 35778999999999877642 33588999999999999997 8999998875 44555443
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.12 E-value=0.034 Score=52.50 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHDA-SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+.|-+.-.|+.+ |..+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 44666777777654 56789999999999999988443 3479999999999988886 8999999999999998
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 205
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.05 E-value=0.026 Score=59.85 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 013087 136 LRHFCKS 142 (449)
Q Consensus 136 l~~~f~~ 142 (449)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3445543
No 206
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.80 E-value=0.4 Score=49.62 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=4.8
Q ss_pred CCCeeEEEEecC
Q 013087 240 NQNRGFAFIEYY 251 (449)
Q Consensus 240 ~~~~g~~fv~f~ 251 (449)
++.++|+--.|+
T Consensus 899 g~q~~~~g~kfs 910 (1282)
T KOG0921|consen 899 GTQRKFAGNKFS 910 (1282)
T ss_pred cchhhccccccc
Confidence 333444433443
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.76 E-value=0.088 Score=53.46 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=64.6
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCcee--CCeEeEEEeCCC
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDCSLAKP 372 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i--~gr~l~v~~a~~ 372 (449)
+.++.|.+-..+-.-|..+|++||.|.+++.+++ -..|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.||+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445555666777889999999999999999887 46899999999999999999999875 478899999997
Q ss_pred CCCCCC
Q 013087 373 QADQKT 378 (449)
Q Consensus 373 ~~~~~~ 378 (449)
-.....
T Consensus 374 ~~~~ep 379 (1007)
T KOG4574|consen 374 LPMYEP 379 (1007)
T ss_pred cccccC
Confidence 665443
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.68 E-value=0.54 Score=37.19 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCC----HHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 117 PHGSEVYLGGIPHDAS----DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t----~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
++=.||.|+=|..++. ...|...++.||+|.+|.+.- +-.|.|.|.+..+|=+|+.+++. ...|..++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3456888877666553 334567788999999998753 34799999999999999997665 66788887
Q ss_pred Eeecc
Q 013087 193 CSAAQ 197 (449)
Q Consensus 193 v~~~~ 197 (449)
+.+-+
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 76653
No 209
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=93.64 E-value=0.32 Score=50.51 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.2
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCCccc
Q 013087 159 EAKGYAFVTFRTKELASQAIEELNSCELK 187 (449)
Q Consensus 159 ~~~g~afV~F~~~~~A~~Al~~l~g~~i~ 187 (449)
.-+||-||+-.....+..||+-+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 36899999999999999999977666554
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.63 E-value=0.31 Score=34.51 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=37.2
Q ss_pred cCCCHHHHHHHHhcCC-----cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 303 KDITQDRLKELFAHHG-----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 303 ~~~t~e~L~~~F~~~G-----~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++..+|..++...+ .|-.|.|..+ |+||+-. .+.|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888887654 3678888754 8999884 56899999999999999999999875
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.56 E-value=0.26 Score=46.53 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=58.9
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g 362 (449)
+..|+|-.+|..+|--||..|+..|-. |.+++|+++... ++-.+.|.|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 689999999999999999999987654 889999995433 34578999999999999999999999875
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.48 E-value=0.22 Score=42.19 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCcccCeeEEEeecc
Q 013087 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKIKCSAAQ 197 (449)
Q Consensus 133 ~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~--g~~i~g~~l~v~~~~ 197 (449)
...|+.+|..|+.+..+.+++. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 4679999999999999888775 3478999999999999999999 999999999998884
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.25 E-value=0.14 Score=49.49 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc--CCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC--CcccCeeEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~ 192 (449)
...|.|.|+.||.++..++|+.+|+. |-++.+|.+-.+. -=||+|.+..+|+.|.+.|.. +.|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34578899999999999999999974 7788889886553 258999999999999997754 346777664
Q ss_pred E
Q 013087 193 C 193 (449)
Q Consensus 193 v 193 (449)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 214
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.52 E-value=0.12 Score=54.98 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=13.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC
Q 013087 122 VYLGGIPHDASDDDLRHFCKSIG 144 (449)
Q Consensus 122 l~v~nLp~~~t~~~l~~~f~~~G 144 (449)
-|+-.+|. |.++|..++..+-
T Consensus 419 Pftf~~P~--s~eel~~lL~~~~ 439 (840)
T PF04147_consen 419 PFTFPCPS--SHEELLELLDGYS 439 (840)
T ss_pred CceecCCC--CHHHHHHHHhcCC
Confidence 34444444 5677888887664
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.52 E-value=0.13 Score=52.30 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=61.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc--cCeeEEEeecc
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL--KGKKIKCSAAQ 197 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i--~g~~l~v~~~~ 197 (449)
+..+.|.+-+.+-..|..+|.+||.|.+++.+++-+ .|.|.|.+.+.|..|+.+|+|..+ .|-+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445667777788888999999999999999988765 899999999999999999999875 57778887775
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.40 E-value=1.2 Score=31.56 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHhcCC-----CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 129 HDASDDDLRHFCKSIG-----EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 129 ~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..++..+|..++...+ .|-.|.|... |+||+-... .|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567888888887653 3778888654 889987655 788888899999999999999764
No 217
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.23 E-value=1.8 Score=44.78 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=47.7
Q ss_pred cCCCHHHHHHHHhcCCc-----EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 303 KDITQDRLKELFAHHGK-----ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 303 ~~~t~e~L~~~F~~~G~-----v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
..++..+|-.++..-+. |-.|.|..+ |.||+. ....|...+..|++..+.|+.|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEc-ChhhHHHHHHHhccccccCCceEEEECCCC
Confidence 45777777777765554 445777644 899998 467789999999999999999999998633
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=0.35 Score=44.88 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHH
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~ 179 (449)
-...|-|.++|.....+||...|+.|+. -..|.++-+ -.||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 3578999999999999999999999874 345555554 379999999999999997
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.27 E-value=14 Score=33.46 Aligned_cols=61 Identities=8% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCC-------CCCcccEEEEEecCHHHHHHHH
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD-------SGEAKGYAFVTFRTKELASQAI 178 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------tg~~~g~afV~F~~~~~A~~Al 178 (449)
..|.|.+.||..+++-..+...|-+||+|.+|.++.+.. .-+......+.|-+.+.+....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 457899999999999999999999999999999998761 1234457889999998876544
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.44 E-value=1.5 Score=32.05 Aligned_cols=55 Identities=16% Similarity=0.384 Sum_probs=40.8
Q ss_pred EEEEecCHHHHHHHHHHhCCCc--ccCeeEEE---------------eecccccccccCCCCCCCCHHHHHHH
Q 013087 164 AFVTFRTKELASQAIEELNSCE--LKGKKIKC---------------SAAQAKHRLFIGNVPRNWGEDDMRKA 219 (449)
Q Consensus 164 afV~F~~~~~A~~Al~~l~g~~--i~g~~l~v---------------~~~~~~~~~~v~~lp~~~~~~~l~~~ 219 (449)
|.|+|....-|++.++ +..+. +.+..+.| ....+++++.+++||..++++.|++.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 6899999999999997 33222 34444433 34447789999999999999998874
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=1.5 Score=43.00 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=60.9
Q ss_pred ccEEEEcCCCcC-CCHHHHHHHHhcC----CcEEEEEecCCCCC-----------C------------------------
Q 013087 293 VKALYVKNLPKD-ITQDRLKELFAHH----GKITKVVIPPAKPG-----------Q------------------------ 332 (449)
Q Consensus 293 ~~~l~V~nLp~~-~t~e~L~~~F~~~----G~v~~v~i~~~~~~-----------~------------------------ 332 (449)
+++|-|.||.|+ +...+|..+|+.| |.|.+|.|.+...+ .
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 489999999976 6789999999866 57999988763321 0
Q ss_pred ------------CcccEEEEEeCCHHHHHHHHHHcCCceeCC--eEeEEEeCC
Q 013087 333 ------------ERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAK 371 (449)
Q Consensus 333 ------------~~kg~afV~F~~~~~A~~A~~~lng~~i~g--r~l~v~~a~ 371 (449)
..-=||.|+|.+...|......+.|..|.. ..|-+.|..
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 111289999999999999999999999975 455555543
No 222
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=89.28 E-value=0.2 Score=46.87 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=3.4
Q ss_pred CHHHHH
Q 013087 132 SDDDLR 137 (449)
Q Consensus 132 t~~~l~ 137 (449)
|.+|+.
T Consensus 191 T~eDF~ 196 (324)
T PF05285_consen 191 TPEDFA 196 (324)
T ss_pred CHHHHH
Confidence 566654
No 223
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.68 E-value=2 Score=29.47 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 130 ~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
.++..+|+..+..|+... |+.++ .|| ||.|.+..+|.+|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567889999999998533 33332 233 89999999999999999999988877654
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.31 E-value=0.32 Score=48.29 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...+|||+||...+..+-++.+...||-|..+..+. |+|..|........|+..++...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999998877543 899999999999999998998889888876654
No 225
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=10 Score=36.47 Aligned_cols=14 Identities=0% Similarity=0.152 Sum_probs=8.4
Q ss_pred eEEEEecCCHHHHH
Q 013087 244 GFAFIEYYNHACAE 257 (449)
Q Consensus 244 g~~fv~f~~~~~a~ 257 (449)
.|-.|+|.+...+.
T Consensus 260 P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 260 PYYVVRFNSEEEIS 273 (483)
T ss_pred ceEEEecCchhhhh
Confidence 35556777665554
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.12 E-value=0.93 Score=37.50 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=57.8
Q ss_pred cEEEEcCCCcCCCH-----HHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe-EeEE
Q 013087 294 KALYVKNLPKDITQ-----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLDC 367 (449)
Q Consensus 294 ~~l~V~nLp~~~t~-----e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr-~l~v 367 (449)
..+.+.+++..+-. .....+|.+|-...-..+++. .++.-|.|.+++.|..|..+++...|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 56777777755432 334567777766666666654 45778899999999999999999999998 8999
Q ss_pred EeCCCCCCC
Q 013087 368 SLAKPQADQ 376 (449)
Q Consensus 368 ~~a~~~~~~ 376 (449)
-|+.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 998876543
No 227
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=82.81 E-value=12 Score=39.57 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.7
Q ss_pred CCCcCCCHHHHHHHHhc
Q 013087 300 NLPKDITQDRLKELFAH 316 (449)
Q Consensus 300 nLp~~~t~e~L~~~F~~ 316 (449)
+.|..+....|+++|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 45677778888888864
No 228
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=82.39 E-value=0.81 Score=38.32 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=7.0
Q ss_pred CCCCcCCccc
Q 013087 1 MPRTRGSTAA 10 (449)
Q Consensus 1 ~~~~~~~~~~ 10 (449)
||+.+++++.
T Consensus 1 m~p~~~~~~~ 10 (187)
T PF11081_consen 1 MPPKKNAKKL 10 (187)
T ss_pred CCCCCccccc
Confidence 7887777653
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.46 E-value=3.4 Score=36.72 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEecCCCCCCcccEEEEEecCHH
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVT-EVRIMKGKDSGEAKGYAFVTFRTKE 172 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~tg~~~g~afV~F~~~~ 172 (449)
.+-|+|+|||.++...||+..+.+.+.+- ++.. ....|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 45699999999999999999999887643 3332 235678999998763
No 230
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=81.03 E-value=0.63 Score=46.85 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=13.3
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceeCC
Q 013087 337 YGFVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 337 ~afV~F~~~~~A~~A~~~lng~~i~g 362 (449)
--||.-.+.++-..|+..|=...+.|
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCC
Confidence 44555555666555555544433433
No 231
>COG4371 Predicted membrane protein [Function unknown]
Probab=80.02 E-value=4 Score=35.66 Aligned_cols=14 Identities=43% Similarity=1.028 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCC
Q 013087 410 GAGYVPAGFAQPMV 423 (449)
Q Consensus 410 g~~~~~~~~~~~~~ 423 (449)
+++|.+++|+.|.-
T Consensus 80 gg~Y~GGGfgfPfi 93 (334)
T COG4371 80 GGGYSGGGFGFPFI 93 (334)
T ss_pred CCCCCCCCcCcCeE
Confidence 34455555555544
No 232
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.91 E-value=1.1 Score=45.46 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=5.0
Q ss_pred EcCCCCCCCHHHH
Q 013087 124 LGGIPHDASDDDL 136 (449)
Q Consensus 124 v~nLp~~~t~~~l 136 (449)
++.+|--++.++.
T Consensus 960 ~~d~pvFAsaeey 972 (988)
T KOG2038|consen 960 LNDSPVFASAEEY 972 (988)
T ss_pred cccchhhhhHHHH
Confidence 3444433333333
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.11 E-value=4.4 Score=36.47 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=63.4
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCC-------CCCcccEEEEEeCCHHHHHHH----HHHcC--Cc
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP-------GQERSRYGFVHFAERSSAMKA----LKNTE--KY 358 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~-------~~~~kg~afV~F~~~~~A~~A----~~~ln--g~ 358 (449)
.++.|.+.|+..+++--.+...|-+||.|++|+++.+.+ .........+.|-+.+.+..- ++.|+ ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998761 122245778999998887543 34444 34
Q ss_pred eeCCeEeEEEeCCCCC
Q 013087 359 EIDGQVLDCSLAKPQA 374 (449)
Q Consensus 359 ~i~gr~l~v~~a~~~~ 374 (449)
.+....|.|+|..-..
T Consensus 94 ~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNY 109 (309)
T ss_pred hcCCcceeEEEEEEec
Confidence 5778889999887533
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=77.57 E-value=0.43 Score=46.35 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCee
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 190 (449)
..|+||++|++++++-.+|..+|+.+--+..+.+.....-.....+.||.|.---....|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4578999999999999999999999877777666444333446668999999888888888888887765433
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.16 E-value=9.4 Score=34.10 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=35.9
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEE-EEEecCCCCCCCcccEEEEEeCCHH
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQERSRYGFVHFAERS 346 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~-~v~i~~~~~~~~~kg~afV~F~~~~ 346 (449)
..-|+|+|||.++.-.+|+..+.+-+.+- ++...-. .|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~------~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH------FGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC------CcceeEecCCcc
Confidence 46799999999999999999998876532 3333211 678999997643
No 236
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=75.74 E-value=1.6 Score=44.90 Aligned_cols=7 Identities=14% Similarity=-0.183 Sum_probs=3.5
Q ss_pred eEeEEEe
Q 013087 363 QVLDCSL 369 (449)
Q Consensus 363 r~l~v~~ 369 (449)
++|.|.-
T Consensus 544 ~PlVla~ 550 (622)
T PF02724_consen 544 LPLVLAA 550 (622)
T ss_pred cceeEEe
Confidence 4555544
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=74.17 E-value=31 Score=32.66 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhcC----CCEEEEEEecCC
Q 013087 117 PHGSEVYLGGIPH-DASDDDLRHFCKSI----GEVTEVRIMKGK 155 (449)
Q Consensus 117 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~----G~v~~v~i~~~~ 155 (449)
....+|-|-||.| .+...+|...|+.| |.|..|.|+...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 3456899999998 47788899888876 678888887754
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.89 E-value=1.4 Score=38.86 Aligned_cols=69 Identities=30% Similarity=0.488 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHHhcCCCEEEEEEecC-C----CCCCccc-----E---------EEE
Q 013087 118 HGSEVYLGGIPHD------------ASDDDLRHFCKSIGEVTEVRIMKG-K----DSGEAKG-----Y---------AFV 166 (449)
Q Consensus 118 ~~~~l~v~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~~~-~----~tg~~~g-----~---------afV 166 (449)
..-||++.+||-. -+++-|+..|..||.|..|.|..- + -+|+..| | |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468999999843 256679999999999999887542 2 1244333 3 556
Q ss_pred EecCHHHHHHHHHHhCCCcc
Q 013087 167 TFRTKELASQAIEELNSCEL 186 (449)
Q Consensus 167 ~F~~~~~A~~Al~~l~g~~i 186 (449)
+|..-..-..|+.+|.|..|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666666677777776654
No 239
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=72.17 E-value=12 Score=40.68 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=10.6
Q ss_pred EcCCCCCCCHHHHHHHHhc
Q 013087 124 LGGIPHDASDDDLRHFCKS 142 (449)
Q Consensus 124 v~nLp~~~t~~~l~~~f~~ 142 (449)
.-.||.+....++-.+..+
T Consensus 1446 ~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1446 ELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEecCCCcchHHHHHHHH
Confidence 3456766666665555443
No 240
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.49 E-value=11 Score=30.73 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.4
Q ss_pred cEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCC
Q 013087 294 KALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAK 329 (449)
Q Consensus 294 ~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~ 329 (449)
.=|.|.|||.. .+++-|+.+.+.+|.+..+......
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 34678899977 7888899999999999998776543
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.28 E-value=6 Score=35.07 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=49.0
Q ss_pred ccEEEEcCCCcC------------CCHHHHHHHHhcCCcEEEEEecCCC-----CCCCc-----ccEE---------EEE
Q 013087 293 VKALYVKNLPKD------------ITQDRLKELFAHHGKITKVVIPPAK-----PGQER-----SRYG---------FVH 341 (449)
Q Consensus 293 ~~~l~V~nLp~~------------~t~e~L~~~F~~~G~v~~v~i~~~~-----~~~~~-----kg~a---------fV~ 341 (449)
..+||+.+||-. .++..|+..|..||.|..|.|+.-. .+++. +||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 478888888854 3567899999999999998886522 22322 3333 355
Q ss_pred eCCHHHHHHHHHHcCCcee----CC----eEeEEEeCCC
Q 013087 342 FAERSSAMKALKNTEKYEI----DG----QVLDCSLAKP 372 (449)
Q Consensus 342 F~~~~~A~~A~~~lng~~i----~g----r~l~v~~a~~ 372 (449)
|.....-..|+.+|.|..+ .+ -.++|.|.++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 5444444555655555443 22 3566666554
No 242
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=68.85 E-value=3.1 Score=38.55 Aligned_cols=6 Identities=0% Similarity=0.279 Sum_probs=2.5
Q ss_pred eEEEcC
Q 013087 121 EVYLGG 126 (449)
Q Consensus 121 ~l~v~n 126 (449)
.|+|.|
T Consensus 343 ~liVAN 348 (542)
T KOG0699|consen 343 KLIVAN 348 (542)
T ss_pred eEEEec
Confidence 344444
No 243
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.42 E-value=0.81 Score=43.13 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=64.8
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+.|+..||...++.++.-+|..||.|..+.+-+...++..+-.+||+-. ..+|..+|..+.-..+.|..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 45688899999999999999999999999988887777777778898864 45667777766666788889999988753
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.35 E-value=4.2 Score=29.73 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=40.3
Q ss_pred EEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCcc-----ccccccccEEEEcCCCcCCCHHHHHHHH
Q 013087 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-----SSAASQVKALYVKNLPKDITQDRLKELF 314 (449)
Q Consensus 246 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~e~L~~~F 314 (449)
|.|.|.....|...++.-. ..+.+....+.+......... -......++|.|.|||....++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 4678888887777665432 233344433333322211111 1223335899999999999999998764
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=62.82 E-value=1.5 Score=42.83 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=56.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
.+.||++|++++++-.+|..+|..+-.+..+-+-....-..-..+++|+|.---...-|+.+||+..+....+.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se 305 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSE 305 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccccc
Confidence 488999999999999999999998866666555443322222457899999888888888888887776655433
No 246
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.72 E-value=6.6 Score=32.69 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCe-eEE
Q 013087 119 GSEVYLGGIPHDASD-----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK-KIK 192 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~-----~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~-~l~ 192 (449)
.+++++.+|+..+-. .....+|.+|-+.....+++ +.+..-|.|.+++.|..|...+++..|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 456777777754322 22346777776666555544 445778999999999999999999999998 888
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
..++++..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 88777543
No 247
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=61.41 E-value=1.9 Score=39.97 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=4.3
Q ss_pred CCCcCCcccc
Q 013087 2 PRTRGSTAAA 11 (449)
Q Consensus 2 ~~~~~~~~~~ 11 (449)
+.+|+..+-+
T Consensus 8 ~~~RSrRana 17 (390)
T KOG2897|consen 8 AAGRSRRANA 17 (390)
T ss_pred hhcccccccc
Confidence 3444444433
No 248
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=61.27 E-value=20 Score=24.75 Aligned_cols=61 Identities=8% Similarity=0.043 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 308 DRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 308 e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
.+|.+-|..+|- |..|+-+..++++.+-..-||+.....+-.. .|+=..|+|++|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 468888999885 8889888888877766778888876654444 345567889998888654
No 249
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=60.83 E-value=6.7 Score=42.48 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=5.8
Q ss_pred HHHHHHHhcCCc
Q 013087 308 DRLKELFAHHGK 319 (449)
Q Consensus 308 e~L~~~F~~~G~ 319 (449)
.+|..+|.-||.
T Consensus 1540 ~Ev~~VF~vYGI 1551 (1640)
T KOG0262|consen 1540 NEVNNVFKVYGI 1551 (1640)
T ss_pred HHHHHhhhheee
Confidence 344455555554
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=59.76 E-value=28 Score=24.09 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 308 DRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 308 e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++|++-|...|. |..|+-+..+.+...-..-||++....+...+ ++=..|++..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 467888888885 77888777776666567889998777664433 3445688999988876543
No 251
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=58.86 E-value=10 Score=37.73 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=8.1
Q ss_pred CeEEEcCCCCCCC
Q 013087 120 SEVYLGGIPHDAS 132 (449)
Q Consensus 120 ~~l~v~nLp~~~t 132 (449)
.+=.|+|||..+-
T Consensus 119 ~rntvgnipl~wY 131 (733)
T KOG0650|consen 119 TRNTVGNIPLKWY 131 (733)
T ss_pred hhcccCCcccccc
Confidence 4456788876543
No 252
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=58.59 E-value=24 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=47.3
Q ss_pred HHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 134 DDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 134 ~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
++|.+.|...| .|..|.-+..+.++.....-||++....+...+ ++=..|.+..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46788888777 578888788776677778899998877664443 5567788999999877654
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=58.16 E-value=13 Score=30.87 Aligned_cols=56 Identities=30% Similarity=0.356 Sum_probs=37.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCC-CCcccEEEEEecCHHHHHHHHH
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIE 179 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~t-g~~~g~afV~F~~~~~A~~Al~ 179 (449)
+++|.. |.+...++|.++-+ |.+..|...+..+. ...+|..||+|.+.+.|..+++
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 456666 33333444444444 78888877555431 2678999999999999999886
No 254
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.95 E-value=26 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCcEEEEEecC
Q 013087 308 DRLKELFAHHGKITKVVIPP 327 (449)
Q Consensus 308 e~L~~~F~~~G~v~~v~i~~ 327 (449)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999988776643
No 255
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=57.93 E-value=11 Score=38.60 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.8
Q ss_pred CCcCCCHHHHHH
Q 013087 301 LPKDITQDRLKE 312 (449)
Q Consensus 301 Lp~~~t~e~L~~ 312 (449)
+|-.+|.++|..
T Consensus 552 ~~l~vTledll~ 563 (822)
T KOG2141|consen 552 LPLSVTLEDLLH 563 (822)
T ss_pred ccccccHHHhhC
Confidence 344455555543
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.76 E-value=12 Score=35.15 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEecCCCC--CCcccEEEEEecCHHHHHHHHHHhCCCccc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCELK 187 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~t--g~~~g~afV~F~~~~~A~~Al~~l~g~~i~ 187 (449)
.-+.|.|++||+.+++.+|.+....|-. |....+.....+ ..-.+.|||.|...++........+|.++.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567999999999999999887777543 222222211100 123567999999999988888888887653
No 257
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.71 E-value=21 Score=24.60 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 134 DDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 134 ~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
.+|.+.|..+| .+..|+-+..++++.....-||+.....+... .++=+.|.|+++.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 58888888888767777788888877654444 25666788999999876544
No 258
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.25 E-value=38 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=40.6
Q ss_pred EEEcCCCcCCCHHHHHHHHhc-CCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 296 LYVKNLPKDITQDRLKELFAH-HGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 296 l~V~nLp~~~t~e~L~~~F~~-~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
-|+-.++..++..+|++.++. ||. |..|..+.-+.+ .--|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 344456788999999999986 564 777766655433 23799999988888776654
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.71 E-value=35 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=40.1
Q ss_pred EcCCCcCCCHHHHHHHHhc-CCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 298 VKNLPKDITQDRLKELFAH-HGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 298 V~nLp~~~t~e~L~~~F~~-~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
+--.+..++..+|++.++. ||. |..|..+.-+.+ .--|||++..-..|......
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHh
Confidence 3345678999999999986 664 778877665533 23799999999888887654
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.83 E-value=22 Score=33.42 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=44.1
Q ss_pred EEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccccccccCCCCCCCCHHHHHHHHH
Q 013087 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVT 221 (449)
Q Consensus 164 afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~ 221 (449)
|||.|.+..+|..|++.+.... .+.++|..|.....+.=.||........+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998554443 3566898998888888889977777777765543
No 261
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.33 E-value=15 Score=28.57 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=28.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHH
Q 013087 121 EVYLGGIPHD---------ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174 (449)
Q Consensus 121 ~l~v~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A 174 (449)
++.|-|++.. ++...|++.|..|.++. |+.+..+ ....|++.|.|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 4667777653 35578999999999875 5555554 35788999999886443
No 262
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.83 E-value=49 Score=30.30 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=4.3
Q ss_pred CCCccccc
Q 013087 441 PDGRIGYV 448 (449)
Q Consensus 441 p~~~~gy~ 448 (449)
|+.|++|+
T Consensus 103 p~srf~~~ 110 (362)
T KOG3875|consen 103 PESRFGLP 110 (362)
T ss_pred cchhcccc
Confidence 45555553
No 263
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.38 E-value=7.7 Score=37.18 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.6
Q ss_pred CeEeEEE
Q 013087 362 GQVLDCS 368 (449)
Q Consensus 362 gr~l~v~ 368 (449)
||+|+-.
T Consensus 446 gRKLrY~ 452 (483)
T KOG2773|consen 446 GRKLRYH 452 (483)
T ss_pred Cceeeee
Confidence 5555443
No 264
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=54.33 E-value=6.1 Score=41.90 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=6.9
Q ss_pred CCeEEEcCCCCC
Q 013087 119 GSEVYLGGIPHD 130 (449)
Q Consensus 119 ~~~l~v~nLp~~ 130 (449)
.+.+||-.+|..
T Consensus 904 ~~~~wvl~~Pi~ 915 (1096)
T TIGR00927 904 KQAIYLFLLPIV 915 (1096)
T ss_pred ceeEeEEecchh
Confidence 345676666653
No 265
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=53.91 E-value=5.9 Score=42.01 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.5
Q ss_pred EEEEEecC
Q 013087 163 YAFVTFRT 170 (449)
Q Consensus 163 ~afV~F~~ 170 (449)
+-.+.|--
T Consensus 933 ~y~ltFi~ 940 (1096)
T TIGR00927 933 FFVITFLG 940 (1096)
T ss_pred eeeehHHH
Confidence 43454433
No 266
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.57 E-value=19 Score=33.89 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=47.4
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCC--CcccEEEEEeCCHHHHHHHHHHcCCcee
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYEI 360 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~i 360 (449)
..+.|.+||+..++.+|.+...++-. |....+.+...+. .-.+.|||.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 78899999999999999888887643 4444444322111 1146889999999997777776776554
No 267
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.04 E-value=7.6 Score=30.19 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=29.9
Q ss_pred cEEEEcCCCcCC---------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHH-HHHHHH
Q 013087 294 KALYVKNLPKDI---------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS-AMKALK 353 (449)
Q Consensus 294 ~~l~V~nLp~~~---------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~-A~~A~~ 353 (449)
-++.|-|++... +-+.|++.|+.|..+. |+.+.+.. + +.|+++|.|...-. -..|++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-g-h~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-G-HTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-E-EEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-C-CcEEEEEEECCChHHHHHHHH
Confidence 456777776543 4588999999987754 55555544 2 26899999976443 344554
No 268
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=51.70 E-value=12 Score=36.71 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHcCCceeCCeEe
Q 013087 344 ERSSAMKALKNTEKYEIDGQVL 365 (449)
Q Consensus 344 ~~~~A~~A~~~lng~~i~gr~l 365 (449)
+.+.+.+|-..+....|.|++|
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCcc
Confidence 4445555554444444555544
No 269
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.26 E-value=23 Score=29.45 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=44.6
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCC-CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
+++|.. +.+...++|.++-+ |.+..|.+.+.... ...+|-.||+|.+.+.|.+.+.. +.....-+.|..++
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 566666 33333344444444 78888877665544 12378999999999999987774 44444444454444
No 270
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=51.10 E-value=48 Score=34.55 Aligned_cols=8 Identities=25% Similarity=0.708 Sum_probs=3.2
Q ss_pred EEecCHHH
Q 013087 166 VTFRTKEL 173 (449)
Q Consensus 166 V~F~~~~~ 173 (449)
+.|.+...
T Consensus 297 ~r~~~~~~ 304 (756)
T KOG2375|consen 297 VRFENEDF 304 (756)
T ss_pred hhhhhhhh
Confidence 34444333
No 271
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=47.95 E-value=15 Score=36.06 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=11.1
Q ss_pred EEcCCCCCCCHHHHHHHH
Q 013087 123 YLGGIPHDASDDDLRHFC 140 (449)
Q Consensus 123 ~v~nLp~~~t~~~l~~~f 140 (449)
.|..||--++.++..+++
T Consensus 802 ~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 802 MLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHhcCCcccchHHHHHHh
Confidence 456677666666655554
No 272
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.68 E-value=9.2 Score=36.70 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.6
Q ss_pred CcCCCHH
Q 013087 302 PKDITQD 308 (449)
Q Consensus 302 p~~~t~e 308 (449)
|.-....
T Consensus 390 peifDD~ 396 (483)
T KOG2773|consen 390 PEIFDDS 396 (483)
T ss_pred ccccCcH
Confidence 3333333
No 273
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=46.46 E-value=94 Score=27.03 Aligned_cols=8 Identities=38% Similarity=0.775 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 013087 396 HLGYGMVG 403 (449)
Q Consensus 396 ~~~~g~~~ 403 (449)
+++|..++
T Consensus 28 QQGY~~pG 35 (238)
T PF02084_consen 28 QQGYAAPG 35 (238)
T ss_pred ccCccCCC
Confidence 34444433
No 274
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.60 E-value=46 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=44.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
...|-|.++|...-.+||...|+.|+. --+|..+-+ -.||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 478999999999999999999999975 223444333 3799999999999999983
No 275
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=45.28 E-value=8.4 Score=37.53 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=7.4
Q ss_pred EEecCHHHHHHHHH
Q 013087 166 VTFRTKELASQAIE 179 (449)
Q Consensus 166 V~F~~~~~A~~Al~ 179 (449)
=.|...+.|-+..+
T Consensus 214 DrF~e~eQaPKSr~ 227 (694)
T KOG4264|consen 214 DRFDEKEQAPKSRK 227 (694)
T ss_pred ccchhhhcCchHHH
Confidence 34666666555443
No 276
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=45.10 E-value=11 Score=42.52 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.4
Q ss_pred EEEEEEec
Q 013087 146 VTEVRIMK 153 (449)
Q Consensus 146 v~~v~i~~ 153 (449)
+..|.|+.
T Consensus 286 ~~~v~iic 293 (2849)
T PTZ00415 286 LIKVKIIC 293 (2849)
T ss_pred cceeEEEc
Confidence 34444443
No 277
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=43.74 E-value=10 Score=37.02 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=5.2
Q ss_pred EEEEEeCCH
Q 013087 337 YGFVHFAER 345 (449)
Q Consensus 337 ~afV~F~~~ 345 (449)
-|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 566666553
No 278
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.35 E-value=18 Score=31.56 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=28.9
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i 325 (449)
...+||+-|+|..+|++.|..+.+++|.+..+..
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3489999999999999999999999997655433
No 279
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=5.2 Score=38.02 Aligned_cols=77 Identities=5% Similarity=-0.113 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
.+.|+..||..+.+.++.-+|..||.|..+.+.+.-+.+...-.+||.-.+ ..|..||..+.-..+.|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456889999999999999999999999998887776656677788887654 45666666666667777777776654
No 280
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=40.58 E-value=18 Score=36.46 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=9.3
Q ss_pred CCeEEEcCCCCCCCHHH
Q 013087 119 GSEVYLGGIPHDASDDD 135 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~ 135 (449)
.-+||-+-...-+..++
T Consensus 295 ~Y~vfTt~fDe~i~A~~ 311 (600)
T TIGR01651 295 DYKVFTTAFDETVDAEE 311 (600)
T ss_pred cceecchhhhhhccHhh
Confidence 55667666555444443
No 281
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=40.09 E-value=85 Score=29.20 Aligned_cols=8 Identities=0% Similarity=0.563 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 013087 308 DRLKELFA 315 (449)
Q Consensus 308 e~L~~~F~ 315 (449)
++|...|+
T Consensus 243 ~ei~~~~~ 250 (465)
T KOG3973|consen 243 EEIQSILS 250 (465)
T ss_pred HHHHHHHH
Confidence 34555554
No 282
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.05 E-value=14 Score=34.81 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=48.4
Q ss_pred cEEEEcCCCcCCCH--------HHHHHHHhc--CCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 013087 294 KALYVKNLPKDITQ--------DRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (449)
Q Consensus 294 ~~l~V~nLp~~~t~--------e~L~~~F~~--~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~ 353 (449)
+.+|+.+.+...+. +++..+|.. ++.+..++..++.....++|..|++|.....|.+++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56777776655444 589999999 6778888888887666678999999999999999985
No 283
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.69 E-value=32 Score=32.28 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=27.2
Q ss_pred EEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 338 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 338 afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
|||+|.+..+|..|++.+.... .+.+++..|..+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999655433 45667777766544
No 284
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.59 E-value=38 Score=23.64 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceeCCe
Q 013087 337 YGFVHFAERSSAMKALKNTEKYEIDGQ 363 (449)
Q Consensus 337 ~afV~F~~~~~A~~A~~~lng~~i~gr 363 (449)
+.+|.|.+..+|.+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999998876555433
No 285
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=37.49 E-value=24 Score=34.13 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=7.3
Q ss_pred CCcccCeeEEEe
Q 013087 183 SCELKGKKIKCS 194 (449)
Q Consensus 183 g~~i~g~~l~v~ 194 (449)
.-.+.||+|.|-
T Consensus 423 SGSMrGRpItvA 434 (620)
T COG4547 423 SGSMRGRPITVA 434 (620)
T ss_pred CCCcCCcceehh
Confidence 334567777764
No 286
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=36.22 E-value=1e+02 Score=29.42 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=56.9
Q ss_pred ccccEEEEcCCCcC-CCHHHHHHHHhcC----CcEEEEEecCCCCC----------------------------------
Q 013087 291 SQVKALYVKNLPKD-ITQDRLKELFAHH----GKITKVVIPPAKPG---------------------------------- 331 (449)
Q Consensus 291 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 331 (449)
..+++|-|-||.++ +...+|..+|+.| |.|..|.|.+...+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34588999999976 6778999988865 56777776552111
Q ss_pred ------C-------------------------CcccEEEEEeCCHHHHHHHHHHcCCceeCC--eEeEEEeCC
Q 013087 332 ------Q-------------------------ERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAK 371 (449)
Q Consensus 332 ------~-------------------------~~kg~afV~F~~~~~A~~A~~~lng~~i~g--r~l~v~~a~ 371 (449)
+ ..--||.|.|.+...+......+.|..+.. ..+-+.|..
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0 001278999999999999999999887764 445555543
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.45 E-value=1.5e+02 Score=20.55 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=37.5
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc-cccccCCCCCCCCHHHHHHHHHhhCC
Q 013087 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGP 225 (449)
Q Consensus 162 g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~-~~~~v~~lp~~~~~~~l~~~f~~~g~ 225 (449)
.+.+|.|.+...|.+|-+.|...-+..+.+.+-..... +.+.+. ++ ..+.+.+..+++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 37899999999999999988877765555543222211 111111 11 1345566777776664
No 288
>COG4907 Predicted membrane protein [Function unknown]
Probab=35.00 E-value=70 Score=31.08 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCc-----EEEEEecCCCCCCCcccEEEEEeCC----HHHHHHHHHHcCC
Q 013087 308 DRLKELFAHHGK-----ITKVVIPPAKPGQERSRYGFVHFAE----RSSAMKALKNTEK 357 (449)
Q Consensus 308 e~L~~~F~~~G~-----v~~v~i~~~~~~~~~kg~afV~F~~----~~~A~~A~~~lng 357 (449)
+-.+.+++.|-. +++|.+-.+ +..|.+ .+...+|++.++.
T Consensus 489 ~aFKnfLsd~s~lke~~pesI~~W~~----------ylVYatALGV~dkVvkam~~~~~ 537 (595)
T COG4907 489 QAFKNFLSDYSQLKEAKPESIHLWEQ----------YLVYATALGVSDKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHhHHHHhhCCCcceehHhh----------hhhhhhhhccHHHHHHHHHHhCc
Confidence 445666665543 455665433 233333 3556677776653
No 289
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.84 E-value=1.4e+02 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 306 TQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 306 t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.-.+|.++|.+.|. |.++.+....+ +++..+.+.+.+.|.++|+. +|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 44778889988875 88887655432 35666677777788888875 5544
No 290
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.53 E-value=37 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=29.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 150 (449)
.....+||+-|||..+|++.|..+.+++|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34567899999999999999999999999555443
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.51 E-value=85 Score=29.47 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=13.1
Q ss_pred CCHHHHHHHHhcCCcEEEE
Q 013087 305 ITQDRLKELFAHHGKITKV 323 (449)
Q Consensus 305 ~t~e~L~~~F~~~G~v~~v 323 (449)
.+...|+++|...+.|..-
T Consensus 216 ~~~a~lKeV~p~a~ki~e~ 234 (377)
T KOG1308|consen 216 ANSATLKEVFPNAGKIEEH 234 (377)
T ss_pred HHHHHHHHhccchhhhhhc
Confidence 4557788888877766554
No 292
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=32.97 E-value=1.4e+02 Score=29.18 Aligned_cols=6 Identities=33% Similarity=0.745 Sum_probs=2.7
Q ss_pred CCHHHH
Q 013087 131 ASDDDL 136 (449)
Q Consensus 131 ~t~~~l 136 (449)
+.++||
T Consensus 220 ldeEDl 225 (654)
T COG5180 220 LDEEDL 225 (654)
T ss_pred cchhhh
Confidence 444444
No 293
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.11 E-value=1.4e+02 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=25.3
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.|.++..+.+- +||-||+=.+..++..|++.+.+..
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhccccee
Confidence 46666665542 8999999999999999999876643
No 294
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=31.08 E-value=20 Score=32.83 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=3.8
Q ss_pred CeEEEcC
Q 013087 120 SEVYLGG 126 (449)
Q Consensus 120 ~~l~v~n 126 (449)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 3556555
No 295
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=30.90 E-value=1.5e+02 Score=31.21 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=9.2
Q ss_pred eeEEEEecCCHHHHHHHHH
Q 013087 243 RGFAFIEYYNHACAEYSRQ 261 (449)
Q Consensus 243 ~g~~fv~f~~~~~a~~a~~ 261 (449)
.|.|.+.|.+...-..|+.
T Consensus 631 QGIalLPFiDe~rLl~a~~ 649 (931)
T KOG2044|consen 631 QGIALLPFIDERRLLSAVA 649 (931)
T ss_pred cccccccccchhhHHHHHH
Confidence 3455555555544444443
No 296
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=30.70 E-value=45 Score=32.37 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=3.8
Q ss_pred eEEEcCCCC
Q 013087 121 EVYLGGIPH 129 (449)
Q Consensus 121 ~l~v~nLp~ 129 (449)
+||-+-...
T Consensus 318 kvftr~fDe 326 (620)
T COG4547 318 KVFTREFDE 326 (620)
T ss_pred cccchhhhh
Confidence 344444433
No 297
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=24 Score=33.41 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHHhc--CCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHH
Q 013087 118 HGSEVYLGGIPHDASDD--------DLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al 178 (449)
.-+.+|+.+.....+.. ++...|.. ++.+..|...++.....++|..|++|.....|++++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34678888887665555 89999998 678888888887755778999999999999999976
No 298
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.81 E-value=1.7e+02 Score=19.24 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCH----HHHHHHHHH
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER----SSAMKALKN 354 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~----~~A~~A~~~ 354 (449)
+|.|.||.-.--...|.+.+...-.|..+.+-.. .+.+-|.|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888877788999999999888898888665 46788998754 455556554
No 299
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=29.47 E-value=20 Score=31.22 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=2.6
Q ss_pred HcCCceeCCeEeE
Q 013087 354 NTEKYEIDGQVLD 366 (449)
Q Consensus 354 ~lng~~i~gr~l~ 366 (449)
-+|+..++-++..
T Consensus 114 ~fnnY~~Dp~rp~ 126 (214)
T PF04959_consen 114 YFNNYLLDPKRPQ 126 (214)
T ss_dssp HHHHH--------
T ss_pred HHHHHhcCcccCC
Confidence 4555555544433
No 300
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=3.5e+02 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSI 143 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~ 143 (449)
...-||++. |..+++++...|+..+
T Consensus 335 dvKpIW~R~-p~eV~EdEYt~FYkSl 359 (785)
T KOG0020|consen 335 DVKPIWLRK-PKEVTEDEYTKFYKSL 359 (785)
T ss_pred ccchhhccC-chhcchHHHHHHHHhh
Confidence 344577764 7889999999888765
No 301
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.49 E-value=48 Score=28.99 Aligned_cols=12 Identities=0% Similarity=-0.033 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHh
Q 013087 130 DASDDDLRHFCK 141 (449)
Q Consensus 130 ~~t~~~l~~~f~ 141 (449)
++...++++.|+
T Consensus 149 S~DW~Em~~Ais 160 (217)
T PF07423_consen 149 SVDWNEMLKAIS 160 (217)
T ss_pred CcCHHHHHHHHH
Confidence 445556555554
No 302
>PHA03169 hypothetical protein; Provisional
Probab=28.21 E-value=93 Score=29.31 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=4.4
Q ss_pred HHHHHHhhC
Q 013087 216 MRKAVTKIG 224 (449)
Q Consensus 216 l~~~f~~~g 224 (449)
.+.+|.++.
T Consensus 303 r~~Ffr~~l 311 (413)
T PHA03169 303 RRRFFRQVL 311 (413)
T ss_pred HHHHHHHhc
Confidence 345555544
No 303
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.98 E-value=1.3e+02 Score=22.26 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=36.7
Q ss_pred EcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 298 VKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 298 V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
|..+-+.++...|...|--.|. -+-..+.+|-- +.+|.|.|.+.+.+..|...|-
T Consensus 17 lYS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 17 LYSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EEecCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHH
Confidence 3345566777888777765553 12223333322 5799999999999999998764
No 304
>KOG4000 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.65 E-value=4.3e+02 Score=23.38 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCCCCcccEEEE--EecCHHHHHHHHHHhCCCcccC---eeEEEeecccccccccCCCCCCCCHHHHH
Q 013087 143 IGEVTEVRIMKGKDSGEAKGYAFV--TFRTKELASQAIEELNSCELKG---KKIKCSAAQAKHRLFIGNVPRNWGEDDMR 217 (449)
Q Consensus 143 ~G~v~~v~i~~~~~tg~~~g~afV--~F~~~~~A~~Al~~l~g~~i~g---~~l~v~~~~~~~~~~v~~lp~~~~~~~l~ 217 (449)
.-+|..+.|+.+++ ...+||--| .+.+..+|.... +|..+.. |.|....+..+.+..+.+ .
T Consensus 14 ~~PIT~~~IVad~n-raP~gf~~I~~~~dd~~dADLWr---Dg~f~~~~~tRYlC~s~s~~keNshlp~---~------- 79 (291)
T KOG4000|consen 14 NRPITSLHIVADFN-RAPKGFSAISRTYDDDSDADLWR---DGSFFGRQNTRYLCLSKSEGKENSHLPE---Y------- 79 (291)
T ss_pred CCcceeEEEEeccc-cCCCccchheeecccccchhhhh---ccceeecceeEEEEeecccCcccccCcc---e-------
Confidence 34689999999987 667887633 444555555543 3443332 344444444433322211 1
Q ss_pred HHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEE
Q 013087 218 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY 297 (449)
Q Consensus 218 ~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (449)
.|..+.++.+ .....+||.-|.+.-- ..++|.. .+.|+
T Consensus 80 --------Vv~~l~vI~~--kdp~P~gf~~I~~TaD-s~eka~R-------------------------------Kk~lc 117 (291)
T KOG4000|consen 80 --------VVETLQVISD--KDPPPKGFSQISRTAD-SDEKAWR-------------------------------KKQLC 117 (291)
T ss_pred --------eeEEEEEeec--CCCCCccceeeeeccc-chHHhhh-------------------------------hceeE
Confidence 1666777764 3444555555544322 2223322 27789
Q ss_pred EcCCCcCCCHHHH
Q 013087 298 VKNLPKDITQDRL 310 (449)
Q Consensus 298 V~nLp~~~t~e~L 310 (449)
|+-.|.+...+-|
T Consensus 118 ik~~pRd~v~~AI 130 (291)
T KOG4000|consen 118 IKLSPRDTVTQAI 130 (291)
T ss_pred EEecCCccHHhhh
Confidence 9988888777644
No 305
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=27.27 E-value=62 Score=31.87 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=3.5
Q ss_pred CCcCCCH
Q 013087 301 LPKDITQ 307 (449)
Q Consensus 301 Lp~~~t~ 307 (449)
|.++|-.
T Consensus 405 LHPSWeA 411 (432)
T PF09073_consen 405 LHPSWEA 411 (432)
T ss_pred CCccHHH
Confidence 5555544
No 306
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=26.89 E-value=2.9e+02 Score=29.61 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=10.0
Q ss_pred ccEEEEcCCCcCCCHHHH
Q 013087 293 VKALYVKNLPKDITQDRL 310 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L 310 (449)
.+|+++.|-+..-..++-
T Consensus 593 gkC~s~as~~~s~s~ed~ 610 (1114)
T KOG3753|consen 593 GKCNSIASPPLSSSREDM 610 (1114)
T ss_pred cceecCCCCccccccccc
Confidence 456666666655444443
No 307
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.29 E-value=1.9e+02 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=36.9
Q ss_pred EcCCCcCCCHHHHHHHHhc-CCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 013087 298 VKNLPKDITQDRLKELFAH-HGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (449)
Q Consensus 298 V~nLp~~~t~e~L~~~F~~-~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~ 353 (449)
+--++...+..+|++.++. |+. |..|..+.-+.+.+ -|||.+....+|.....
T Consensus 86 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K---KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK---KAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce---EEEEEECCCCcHHHHHH
Confidence 3335678899999999886 664 77777666554322 79999987777655443
No 308
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=26.26 E-value=86 Score=23.27 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
.|++|+|.+-...++-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888887665556669999999976
No 309
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.14 E-value=92 Score=22.60 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
.|++|+|.+-...+.-++||-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766657779999999976
No 310
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=25.94 E-value=32 Score=33.78 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=11.9
Q ss_pred CCCCCCeEEEcCCCCCCC
Q 013087 115 LPPHGSEVYLGGIPHDAS 132 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t 132 (449)
..+.+.+++-+.|.+.+.
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~ 192 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVK 192 (641)
T ss_pred ecCCCceeeeccccceEE
Confidence 345677777777776654
No 311
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.43 E-value=97 Score=32.18 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=9.3
Q ss_pred CHHHHHHHHhcCC
Q 013087 132 SDDDLRHFCKSIG 144 (449)
Q Consensus 132 t~~~l~~~f~~~G 144 (449)
+.++|..+++.+-
T Consensus 397 ~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 397 NYEEFLALLEKLS 409 (823)
T ss_pred CHHHHHHHHHccC
Confidence 5677888777764
No 312
>PRK11901 hypothetical protein; Reviewed
Probab=23.71 E-value=2.6e+02 Score=26.16 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhcCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEE--EecCHHHHHHHHHHh
Q 013087 112 LLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFV--TFRTKELASQAIEEL 181 (449)
Q Consensus 112 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV--~F~~~~~A~~Al~~l 181 (449)
....+....+|-|-.+.. ++.|..|..+++ +..++++.... .....|..| .|.+.++|..|+..|
T Consensus 238 L~s~p~~~YTLQL~Aas~---~~~L~~f~~~~~-L~~~~VYqT~R-nGkpWYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 238 LSSAPASHYTLQLSSASR---SDTLNAYAKKQN-LSHYHVYETKR-DGKPWYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred hhcCCCCCeEEEeecCCC---HHHHHHHHHHcC-cCceEEEEEEE-CCceEEEEEecCcCCHHHHHHHHHhC
No 313
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=23.52 E-value=2.2e+02 Score=24.40 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013087 348 AMKALK 353 (449)
Q Consensus 348 A~~A~~ 353 (449)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 333443
No 314
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=23.47 E-value=65 Score=31.93 Aligned_cols=73 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCchhccccccCCCcccchhhhhhhhhhhhhhchhhhhhhcc---ccchhcccccccccccc
Q 013087 13 NPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEE---EVEEEEETEDVVDGIDA 85 (449)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~e~~e---e~e~eee~~~~~~~~~~ 85 (449)
...+....++......+..+.|.+++.-++++..+-..+++++++...--+++... .++.|+|++++.+.+..
T Consensus 277 ~d~Dd~a~eesdd~d~e~~E~DYdee~addEE~Peik~dE~~~kE~~~~~~ee~l~~~~~desDeedd~eee~e~e 352 (555)
T KOG2393|consen 277 KDVDDEAFEESDDGDNEGRELDYDEESADDEEAPEIKGDEDDNKELEGGIKEEMLQANASDESDEEDDLEEENEEE 352 (555)
T ss_pred cCCcccccccCCCccccccccccccccCCcccccccccchhhhhhhccchhHhhhhhhcccccccccCcccchhhh
No 315
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=23.33 E-value=3.2e+02 Score=24.52 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=8.0
Q ss_pred cEEEEcCCCcCCCH
Q 013087 294 KALYVKNLPKDITQ 307 (449)
Q Consensus 294 ~~l~V~nLp~~~t~ 307 (449)
+.|.+++-|..+-+
T Consensus 169 rv~l~~g~~k~v~~ 182 (390)
T KOG2192|consen 169 RVVLIGGKPKRVVE 182 (390)
T ss_pred eEEEecCCcchHHH
Confidence 55666666655543
No 316
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=61 Score=32.95 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=10.3
Q ss_pred HHHHHHhcCCCEEEEE
Q 013087 135 DLRHFCKSIGEVTEVR 150 (449)
Q Consensus 135 ~l~~~f~~~G~v~~v~ 150 (449)
..+.-|++|--+.+.+
T Consensus 466 ~ArerfqkYRGLksl~ 481 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLR 481 (754)
T ss_pred HHHHHHHHhccccccc
Confidence 4567777776666554
No 317
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.70 E-value=3.2e+02 Score=19.81 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHH
Q 013087 122 VYLGGIPHDASDDDLRHFCKS-IG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (449)
Q Consensus 122 l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~ 179 (449)
-|.-.....++..+|++.++. || .|..|+.+..+ ...--|||.+.....|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHH
Confidence 455566788999999999986 55 47778776664 244579999999888887654
No 318
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=5.7e+02 Score=22.74 Aligned_cols=71 Identities=13% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 013087 372 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDG 443 (449)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~g~g~~~~~~~~~p~~~p~~ 443 (449)
+...+.......+........++..++++-.+...|+.|.....++..+ +.+|..+++...-+..+..+++
T Consensus 178 p~~pr~~gn~gps~~~pep~~~P~rGg~~~dpl~~Gp~g~~~~~pg~pn-~~PG~vPpgarFdP~gP~g~~~ 248 (266)
T KOG4761|consen 178 PGTPRVAGNIGPSTHSPEPLDGPRRGGMIVDPLRSGPRGLIDPSPGLPN-LPPGAVPPGARFDPFGPIGTSP 248 (266)
T ss_pred CCCCCcCCCcCcccccCCCCCCCCcCCccccccccCCCCCCCCCCCCCC-CCCCCCCCCCcCCCCCCCCCCC
No 319
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.83 E-value=3.2e+02 Score=19.44 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHH
Q 013087 121 EVYLGGIPHDASDDDLRHFCKS-IG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~ 179 (449)
.-|+-.++.+++..+|++.++. |+ .|..|+.+..+. ..--|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3566677889999999999986 55 477777766542 44479999988887776543
No 320
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.72 E-value=3e+02 Score=19.00 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=37.6
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
..|+|.++.-.--...+.........|..+.+-.. ++.++|.|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 57888888877778889999998888888888766 4679999988
Done!