Query 013087
Match_columns 449
No_of_seqs 366 out of 3207
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:57:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.1E-44 7.1E-49 332.9 26.4 246 118-376 21-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3E-44 1E-48 333.2 27.3 252 112-373 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6E-37 2E-41 269.9 16.7 171 118-376 14-184 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 8E-35 2.7E-39 253.6 21.2 181 115-379 9-189 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 1.3E-34 4.3E-39 245.3 21.1 166 120-372 1-166 (166)
6 2qfj_A FBP-interacting repress 100.0 7.6E-34 2.6E-38 251.4 23.1 182 118-376 27-208 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 3.3E-34 1.1E-38 243.3 19.9 165 118-370 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 7.2E-34 2.4E-38 240.9 21.3 164 119-370 2-167 (167)
9 2cjk_A Nuclear polyadenylated 100.0 2.1E-34 7.2E-39 244.2 14.7 165 118-373 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 8.4E-33 2.9E-37 236.2 19.7 166 118-371 2-175 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 3.5E-32 1.2E-36 231.6 18.4 159 118-371 3-172 (172)
12 2yh0_A Splicing factor U2AF 65 100.0 6.3E-32 2.2E-36 235.6 20.3 183 118-375 3-196 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 6.3E-33 2.1E-37 237.0 13.6 166 115-373 9-174 (175)
14 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-30 4.4E-35 240.2 24.7 246 116-371 6-281 (282)
15 2adc_A Polypyrimidine tract-bi 100.0 1.4E-30 4.9E-35 231.8 22.7 194 116-373 31-228 (229)
16 3tyt_A Heterogeneous nuclear r 100.0 7.9E-31 2.7E-35 228.0 20.5 194 118-370 3-204 (205)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-30 5.4E-35 226.6 16.7 192 119-373 3-197 (198)
18 3sde_A Paraspeckle component 1 100.0 3.1E-30 1.1E-34 234.2 18.3 160 116-376 19-182 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2.7E-25 9.2E-30 204.8 19.0 165 116-285 92-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1E-24 3.6E-29 201.7 15.4 163 116-283 114-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.5E-23 5.1E-28 175.2 18.0 84 293-376 70-153 (158)
22 2i2y_A Fusion protein consists 99.9 6.4E-22 2.2E-26 163.6 12.9 139 158-374 10-149 (150)
23 4fxv_A ELAV-like protein 1; RN 99.9 4.3E-22 1.5E-26 151.4 10.9 81 292-372 18-98 (99)
24 3q2s_C Cleavage and polyadenyl 99.9 3.1E-23 1.1E-27 182.9 4.4 82 293-374 68-151 (229)
25 4fxv_A ELAV-like protein 1; RN 99.9 2.7E-21 9.2E-26 147.0 11.5 82 117-198 17-98 (99)
26 4f25_A Polyadenylate-binding p 99.9 1.5E-21 5.2E-26 153.2 10.2 97 116-214 2-112 (115)
27 2lxi_A RNA-binding protein 10; 99.8 1.3E-21 4.5E-26 146.4 7.5 82 294-375 2-85 (91)
28 1whw_A Hypothetical protein ri 99.8 5.2E-20 1.8E-24 140.6 13.5 86 292-377 7-92 (99)
29 2lkz_A RNA-binding protein 5; 99.8 4.7E-21 1.6E-25 143.7 7.3 80 293-372 9-94 (95)
30 3s8s_A Histone-lysine N-methyl 99.8 2.4E-20 8.1E-25 144.5 11.3 83 293-375 6-88 (110)
31 2dnz_A Probable RNA-binding pr 99.8 4.3E-20 1.5E-24 139.9 12.4 84 293-376 5-88 (95)
32 1x5u_A Splicing factor 3B subu 99.8 6.6E-20 2.3E-24 141.7 13.1 89 290-378 12-100 (105)
33 1h2v_Z 20 kDa nuclear CAP bind 99.8 4E-20 1.4E-24 153.8 11.7 86 291-376 37-122 (156)
34 2dgs_A DAZ-associated protein 99.8 8.5E-20 2.9E-24 139.4 12.7 87 291-378 8-94 (99)
35 2dgo_A Cytotoxic granule-assoc 99.8 1.8E-19 6.3E-24 141.6 14.9 88 290-377 12-99 (115)
36 1x5t_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 140.4 10.7 87 292-378 4-91 (96)
37 2cq0_A Eukaryotic translation 99.8 7.1E-20 2.4E-24 140.9 12.0 88 290-377 12-99 (103)
38 2cqd_A RNA-binding region cont 99.8 2.5E-19 8.6E-24 141.0 15.1 86 290-376 14-99 (116)
39 3s8s_A Histone-lysine N-methyl 99.8 6.5E-20 2.2E-24 142.0 11.4 84 116-199 3-86 (110)
40 3md1_A Nuclear and cytoplasmic 99.8 7.2E-20 2.5E-24 134.9 11.2 81 294-374 2-82 (83)
41 2dnm_A SRP46 splicing factor; 99.8 6.9E-20 2.3E-24 141.0 11.5 87 291-377 11-97 (103)
42 2lea_A Serine/arginine-rich sp 99.8 1.4E-20 4.9E-25 151.7 7.8 127 244-377 5-131 (135)
43 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-19 4.7E-24 147.5 13.3 88 289-376 38-125 (139)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.6E-20 2.6E-24 140.5 11.1 87 292-378 11-97 (102)
45 2cph_A RNA binding motif prote 99.8 1.7E-19 5.8E-24 139.9 13.0 88 290-377 12-101 (107)
46 1x4h_A RNA-binding protein 28; 99.8 2.1E-19 7.1E-24 140.4 13.3 89 290-378 12-106 (111)
47 2x1f_A MRNA 3'-END-processing 99.8 1.5E-19 5E-24 137.2 12.0 83 293-375 2-84 (96)
48 1x5s_A Cold-inducible RNA-bind 99.8 5.4E-20 1.8E-24 141.4 9.6 88 291-378 10-97 (102)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.8E-20 3E-24 135.8 10.3 81 293-373 6-86 (87)
50 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-19 3.9E-24 142.8 11.1 88 291-378 23-110 (115)
51 1wi8_A EIF-4B, eukaryotic tran 99.8 3.1E-19 1.1E-23 137.5 13.2 84 292-377 14-98 (104)
52 2cpf_A RNA binding motif prote 99.8 1.1E-19 3.7E-24 138.6 10.4 85 293-377 5-92 (98)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 134.5 10.3 80 292-371 6-85 (85)
54 3pgw_S U1-70K; protein-RNA com 99.8 4.2E-20 1.4E-24 178.2 10.1 86 290-375 99-184 (437)
55 2d9p_A Polyadenylate-binding p 99.8 1.6E-19 5.6E-24 138.9 11.3 87 290-378 12-98 (103)
56 2do4_A Squamous cell carcinoma 99.8 2.1E-19 7.1E-24 137.5 11.8 84 291-375 15-98 (100)
57 2lxi_A RNA-binding protein 10; 99.8 2.4E-20 8.1E-25 139.5 6.3 83 119-201 1-85 (91)
58 2fy1_A RNA-binding motif prote 99.8 2.6E-19 8.8E-24 140.5 12.5 83 293-376 7-89 (116)
59 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-19 8.6E-24 135.4 12.0 81 291-371 14-94 (94)
60 2cqc_A Arginine/serine-rich sp 99.8 2.1E-19 7E-24 136.2 11.5 83 290-372 12-94 (95)
61 2dng_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 137.3 12.5 85 291-377 13-97 (103)
62 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.6E-24 152.5 10.7 131 248-378 11-157 (165)
63 4f25_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 142.3 10.0 81 294-376 6-86 (115)
64 3ns6_A Eukaryotic translation 99.8 4E-20 1.4E-24 141.1 7.0 82 293-374 6-94 (100)
65 3r27_A HnRNP L, heterogeneous 99.8 1.8E-19 6.1E-24 134.8 10.2 78 291-374 19-98 (100)
66 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.6E-24 136.4 10.0 80 292-377 15-96 (105)
67 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-19 7.3E-24 139.1 10.8 87 291-377 11-100 (106)
68 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-19 1.1E-23 139.0 11.9 86 290-375 23-108 (110)
69 2cq3_A RNA-binding protein 9; 99.8 8E-19 2.7E-23 135.0 14.0 86 290-377 12-97 (103)
70 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.9E-19 2.4E-23 135.4 13.5 85 291-377 13-97 (103)
71 2dnh_A Bruno-like 5, RNA bindi 99.8 3.7E-19 1.3E-23 137.4 11.9 87 291-378 13-102 (105)
72 2cpe_A RNA-binding protein EWS 99.8 3.5E-19 1.2E-23 139.5 11.8 86 291-376 13-106 (113)
73 3ex7_B RNA-binding protein 8A; 99.8 2.5E-19 8.4E-24 143.4 11.0 86 291-376 20-105 (126)
74 2lkz_A RNA-binding protein 5; 99.8 6.2E-20 2.1E-24 137.6 6.9 80 119-198 9-94 (95)
75 1p27_B RNA-binding protein 8A; 99.8 2.5E-19 8.7E-24 138.6 10.3 86 290-375 20-105 (106)
76 2dgx_A KIAA0430 protein; RRM d 99.8 4.9E-19 1.7E-23 134.1 11.7 81 292-375 8-92 (96)
77 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-19 8.1E-24 128.7 9.1 73 293-371 7-79 (89)
78 2dh8_A DAZ-associated protein 99.8 2.8E-19 9.7E-24 138.1 10.4 87 290-377 13-99 (105)
79 2dhg_A TRNA selenocysteine ass 99.8 2.4E-19 8.3E-24 138.2 9.9 85 292-377 8-94 (104)
80 3lqv_A PRE-mRNA branch site pr 99.8 3.2E-19 1.1E-23 140.2 10.8 106 115-225 4-109 (115)
81 1x4d_A Matrin 3; structural ge 99.8 2.9E-19 9.9E-24 135.3 9.8 79 292-376 14-95 (102)
82 2jrs_A RNA-binding protein 39; 99.8 2.9E-19 1E-23 138.2 10.1 85 290-374 23-107 (108)
83 3p5t_L Cleavage and polyadenyl 99.8 4.1E-20 1.4E-24 138.3 5.0 82 294-375 2-85 (90)
84 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.8E-19 1.3E-23 149.1 11.4 84 116-199 69-152 (165)
85 1x4a_A Splicing factor, argini 99.8 1.4E-18 4.7E-23 135.1 13.7 84 290-376 19-102 (109)
86 4a8x_A RNA-binding protein wit 99.8 3.2E-19 1.1E-23 133.1 9.6 83 293-375 4-87 (88)
87 1x4b_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 140.0 10.3 87 290-377 24-110 (116)
88 2dnz_A Probable RNA-binding pr 99.8 7.5E-19 2.6E-23 133.0 11.6 85 116-200 2-86 (95)
89 2cq1_A PTB-like protein L; RRM 99.8 1.5E-18 5E-23 131.6 13.0 81 291-377 13-95 (101)
90 2do0_A HnRNP M, heterogeneous 99.8 1.7E-18 5.7E-23 135.9 13.8 84 292-376 14-97 (114)
91 3ucg_A Polyadenylate-binding p 99.8 6.1E-19 2.1E-23 131.8 10.7 81 293-374 6-86 (89)
92 3md1_A Nuclear and cytoplasmic 99.8 7.8E-19 2.7E-23 129.3 11.1 81 119-199 1-81 (83)
93 2div_A TRNA selenocysteine ass 99.8 3.4E-19 1.2E-23 136.0 9.3 84 292-375 8-96 (99)
94 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.2E-19 2.5E-23 130.8 10.8 83 117-199 4-86 (87)
95 2la6_A RNA-binding protein FUS 99.8 4.3E-19 1.5E-23 135.4 9.6 82 290-371 10-99 (99)
96 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.7E-23 133.3 11.7 81 291-377 13-95 (104)
97 2kxn_B Transformer-2 protein h 99.8 4.2E-19 1.5E-23 141.8 9.7 86 290-375 43-128 (129)
98 2x1f_A MRNA 3'-END-processing 99.8 1E-18 3.6E-23 132.4 11.4 85 118-202 1-85 (96)
99 1s79_A Lupus LA protein; RRM, 99.8 4E-19 1.4E-23 135.7 9.0 78 293-372 11-88 (103)
100 2dgv_A HnRNP M, heterogeneous 99.8 6.8E-19 2.3E-23 132.4 10.1 83 292-376 7-89 (92)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.6E-19 2.6E-23 130.1 10.2 82 116-197 4-85 (85)
102 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.9E-23 133.1 11.2 86 116-201 5-90 (99)
103 2cq4_A RNA binding motif prote 99.8 2.7E-19 9.1E-24 140.4 7.7 85 291-376 23-107 (114)
104 2ywk_A Putative RNA-binding pr 99.8 8.5E-19 2.9E-23 132.8 10.2 80 292-372 15-94 (95)
105 2khc_A Testis-specific RNP-typ 99.8 9.1E-19 3.1E-23 138.3 10.8 82 290-371 37-118 (118)
106 1x4c_A Splicing factor, argini 99.8 4E-18 1.4E-22 132.1 14.2 79 292-377 14-97 (108)
107 2m2b_A RNA-binding protein 10; 99.8 4.2E-19 1.4E-23 142.8 8.9 85 291-376 21-111 (131)
108 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-18 5E-23 134.6 11.5 85 291-376 23-107 (109)
109 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4E-23 131.7 10.8 83 115-197 12-94 (94)
110 2cqg_A TDP-43, TAR DNA-binding 99.8 2.7E-18 9.3E-23 132.0 12.9 85 291-377 13-97 (103)
111 2dgu_A Heterogeneous nuclear r 99.8 2.9E-18 1E-22 131.7 13.0 80 291-378 9-88 (103)
112 2cpi_A CCR4-NOT transcription 99.8 1.2E-18 4.2E-23 135.7 10.9 84 292-375 14-103 (111)
113 2cqc_A Arginine/serine-rich sp 99.8 1.2E-18 4.1E-23 132.0 10.5 84 115-198 11-94 (95)
114 2dgs_A DAZ-associated protein 99.8 1.8E-18 6.3E-23 131.9 11.5 84 116-200 7-90 (99)
115 3p5t_L Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 133.4 7.1 80 120-199 2-83 (90)
116 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 128.8 10.8 79 291-370 9-87 (87)
117 2ad9_A Polypyrimidine tract-bi 99.8 9.6E-19 3.3E-23 135.8 9.8 80 292-377 30-111 (119)
118 2la6_A RNA-binding protein FUS 99.8 1.5E-18 5E-23 132.4 10.7 84 114-197 8-99 (99)
119 3n9u_C Cleavage and polyadenyl 99.8 8.1E-19 2.8E-23 144.8 9.9 81 293-373 55-137 (156)
120 2dnq_A RNA-binding protein 4B; 99.8 2.2E-18 7.7E-23 128.9 11.5 78 292-377 7-84 (90)
121 3ns6_A Eukaryotic translation 99.8 2.2E-19 7.5E-24 137.0 5.9 83 118-200 5-94 (100)
122 1x5u_A Splicing factor 3B subu 99.8 1.7E-18 5.7E-23 133.7 11.0 87 115-201 11-97 (105)
123 2cqp_A RNA-binding protein 12; 99.8 4.6E-19 1.6E-23 135.0 7.6 84 291-374 13-96 (98)
124 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5E-19 1.7E-23 135.1 7.8 82 291-374 17-99 (100)
125 3ulh_A THO complex subunit 4; 99.8 1.6E-18 5.5E-23 134.3 10.7 80 291-371 27-106 (107)
126 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4E-23 134.8 9.8 85 115-199 22-106 (108)
127 2cq0_A Eukaryotic translation 99.8 1.2E-18 4.2E-23 133.9 9.9 85 116-200 12-96 (103)
128 1x5t_A Splicing factor 3B subu 99.8 1E-18 3.5E-23 132.6 9.2 84 117-200 3-87 (96)
129 2kt5_A RNA and export factor-b 99.8 3.7E-18 1.3E-22 136.0 12.8 86 289-375 31-116 (124)
130 2do4_A Squamous cell carcinoma 99.8 2.6E-18 8.8E-23 131.4 11.4 84 116-200 14-97 (100)
131 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-18 5.1E-23 133.2 10.0 85 116-200 9-93 (102)
132 2dnm_A SRP46 splicing factor; 99.8 1.2E-18 4.2E-23 133.9 9.5 85 116-200 10-94 (103)
133 2dis_A Unnamed protein product 99.8 3.3E-18 1.1E-22 133.1 12.0 84 293-376 8-95 (109)
134 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-18 9.1E-23 134.9 11.6 86 115-200 11-96 (115)
135 2jwn_A Embryonic polyadenylate 99.8 1.8E-18 6.3E-23 137.8 10.7 84 292-376 35-118 (124)
136 2fc9_A NCL protein; structure 99.8 4.2E-18 1.4E-22 130.4 12.3 82 291-376 13-94 (101)
137 3s7r_A Heterogeneous nuclear r 99.8 2.7E-18 9.3E-23 127.6 10.8 81 115-196 7-87 (87)
138 1p27_B RNA-binding protein 8A; 99.8 2.4E-18 8.1E-23 133.1 10.8 83 117-199 21-103 (106)
139 3q2s_C Cleavage and polyadenyl 99.8 6.5E-19 2.2E-23 155.2 8.6 82 118-199 67-150 (229)
140 2dgt_A RNA-binding protein 30; 99.8 4.4E-18 1.5E-22 127.8 12.0 78 292-377 9-86 (92)
141 2mss_A Protein (musashi1); RNA 99.8 5.4E-19 1.9E-23 127.4 6.7 75 295-370 1-75 (75)
142 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-18 6.1E-23 135.9 10.2 85 116-200 22-106 (115)
143 1wez_A HnRNP H', FTP-3, hetero 99.8 8.4E-19 2.9E-23 134.0 7.8 81 292-375 14-94 (102)
144 1x4h_A RNA-binding protein 28; 99.8 2.9E-18 1E-22 133.8 11.1 86 115-200 11-102 (111)
145 2fc8_A NCL protein; structure 99.8 3.5E-18 1.2E-22 131.2 11.3 85 289-376 11-95 (102)
146 2cpf_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 131.8 9.4 84 117-200 3-89 (98)
147 1wg5_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 131.3 11.3 82 292-375 14-96 (104)
148 2nlw_A Eukaryotic translation 99.8 2.3E-18 7.7E-23 132.7 10.2 81 293-375 15-102 (105)
149 1x4e_A RNA binding motif, sing 99.8 3.3E-19 1.1E-23 132.0 5.2 80 292-371 4-83 (85)
150 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.2E-23 133.7 8.7 85 116-200 9-93 (102)
151 1p1t_A Cleavage stimulation fa 99.8 7.1E-19 2.4E-23 135.6 7.3 84 293-376 8-91 (104)
152 2kxn_B Transformer-2 protein h 99.8 2E-18 6.8E-23 137.9 10.1 86 114-199 41-126 (129)
153 1x4g_A Nucleolysin TIAR; struc 99.8 4.3E-18 1.5E-22 132.2 11.6 80 292-377 24-103 (109)
154 2err_A Ataxin-2-binding protei 99.8 1.7E-18 5.7E-23 134.3 9.0 84 288-373 24-107 (109)
155 2cpj_A Non-POU domain-containi 99.8 3.3E-18 1.1E-22 130.4 10.4 81 290-376 12-92 (99)
156 2cpy_A RNA-binding protein 12; 99.8 5.3E-19 1.8E-23 138.4 6.1 83 291-375 13-96 (114)
157 2ek1_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 133.8 5.9 80 293-372 15-94 (95)
158 2cpd_A Apobec-1 stimulating pr 99.8 1.2E-17 4.1E-22 127.3 13.4 79 290-376 12-92 (99)
159 1why_A Hypothetical protein ri 99.8 5E-18 1.7E-22 128.9 11.2 78 292-375 16-95 (97)
160 2cph_A RNA binding motif prote 99.8 4.3E-18 1.5E-22 131.9 11.1 86 116-201 12-99 (107)
161 1s79_A Lupus LA protein; RRM, 99.8 2.3E-18 8E-23 131.4 9.2 80 117-198 9-88 (103)
162 1x4f_A Matrin 3; structural ge 99.8 1.5E-18 5E-23 133.2 7.9 82 290-377 22-106 (112)
163 2dgw_A Probable RNA-binding pr 99.8 3.4E-18 1.2E-22 128.2 9.8 80 292-374 9-88 (91)
164 1sjq_A Polypyrimidine tract-bi 99.8 3.3E-18 1.1E-22 129.3 9.6 80 115-200 12-93 (105)
165 2dgp_A Bruno-like 4, RNA bindi 99.8 3E-18 1E-22 132.6 9.6 85 116-200 10-97 (106)
166 3n9u_C Cleavage and polyadenyl 99.8 3.3E-18 1.1E-22 141.1 10.3 82 118-199 54-137 (156)
167 1oo0_B CG8781-PA, drosophila Y 99.8 4.5E-18 1.5E-22 132.5 10.6 83 117-199 24-106 (110)
168 2dnp_A RNA-binding protein 14; 99.8 6.3E-18 2.2E-22 126.4 10.9 76 292-375 8-83 (90)
169 2dnh_A Bruno-like 5, RNA bindi 99.8 6.6E-18 2.3E-22 130.4 11.4 83 117-200 13-98 (105)
170 2jvr_A Nucleolar protein 3; RN 99.8 2.5E-18 8.5E-23 132.6 8.9 78 293-374 28-106 (111)
171 2div_A TRNA selenocysteine ass 99.8 3E-18 1E-22 130.8 9.3 84 116-199 6-94 (99)
172 3ucg_A Polyadenylate-binding p 99.8 4.5E-18 1.5E-22 127.1 10.1 80 119-199 6-85 (89)
173 2fy1_A RNA-binding motif prote 99.8 5E-18 1.7E-22 133.1 10.8 84 116-200 4-87 (116)
174 1x4e_A RNA binding motif, sing 99.8 9.7E-19 3.3E-23 129.4 6.3 82 116-197 2-83 (85)
175 2wbr_A GW182, gawky, LD47780P; 99.8 4.9E-18 1.7E-22 121.9 9.5 74 118-197 6-79 (89)
176 2ywk_A Putative RNA-binding pr 99.7 5E-18 1.7E-22 128.5 10.2 81 116-197 13-93 (95)
177 2hvz_A Splicing factor, argini 99.7 4.5E-18 1.6E-22 130.2 10.0 78 294-376 1-78 (101)
178 2d9p_A Polyadenylate-binding p 99.7 5.2E-18 1.8E-22 130.4 10.3 83 116-200 12-94 (103)
179 2khc_A Testis-specific RNP-typ 99.7 3.1E-18 1.1E-22 135.2 9.2 82 116-197 37-118 (118)
180 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8.1E-18 2.8E-22 137.3 12.0 82 289-370 59-140 (140)
181 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-18 3.4E-23 126.7 5.9 76 294-370 1-76 (77)
182 2a3j_A U1 small nuclear ribonu 99.7 4.4E-18 1.5E-22 134.7 10.0 82 292-376 28-113 (127)
183 2ki2_A SS-DNA binding protein 99.7 4.9E-19 1.7E-23 132.6 4.3 81 294-375 2-82 (90)
184 2dnn_A RNA-binding protein 12; 99.7 3.6E-18 1.2E-22 131.4 9.2 80 293-375 16-95 (109)
185 4a8x_A RNA-binding protein wit 99.7 3.9E-18 1.3E-22 127.1 9.2 82 118-199 3-85 (88)
186 2lcw_A RNA-binding protein FUS 99.6 9E-20 3.1E-24 143.5 0.0 85 292-376 6-98 (116)
187 2dng_A Eukaryotic translation 99.7 6.4E-18 2.2E-22 129.9 10.4 83 116-200 12-94 (103)
188 3ulh_A THO complex subunit 4; 99.7 9.3E-18 3.2E-22 130.0 11.4 82 115-197 25-106 (107)
189 2dhg_A TRNA selenocysteine ass 99.7 4.8E-18 1.6E-22 130.9 9.6 85 115-200 5-91 (104)
190 2cpe_A RNA-binding protein EWS 99.7 4.9E-18 1.7E-22 133.0 9.8 85 116-200 12-104 (113)
191 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.9E-22 125.0 11.1 79 115-199 17-97 (100)
192 2ytc_A PRE-mRNA-splicing facto 99.7 8.1E-18 2.8E-22 124.4 10.1 75 291-371 10-85 (85)
193 2krb_A Eukaryotic translation 99.7 2.3E-18 7.8E-23 126.0 7.0 73 294-368 2-81 (81)
194 1wf1_A RNA-binding protein RAL 99.7 1.1E-17 3.7E-22 130.2 11.2 77 292-376 26-103 (110)
195 2cqd_A RNA-binding region cont 99.7 9.2E-18 3.1E-22 132.0 10.7 83 116-199 14-96 (116)
196 1wi8_A EIF-4B, eukaryotic tran 99.7 7E-18 2.4E-22 129.9 9.8 82 117-200 13-95 (104)
197 1x5o_A RNA binding motif, sing 99.7 8.1E-18 2.8E-22 131.9 10.3 82 291-373 23-112 (114)
198 2xnq_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 126.0 11.3 78 289-374 18-96 (97)
199 2jvo_A Nucleolar protein 3; nu 99.7 6.7E-18 2.3E-22 130.5 9.7 80 288-375 26-105 (108)
200 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.4E-23 130.2 6.9 81 117-197 13-93 (95)
201 2rs2_A Musashi-1, RNA-binding 99.7 7.9E-18 2.7E-22 130.4 9.9 84 115-199 21-104 (109)
202 2mss_A Protein (musashi1); RNA 99.7 3.1E-18 1.1E-22 123.4 7.0 75 121-196 1-75 (75)
203 2dh8_A DAZ-associated protein 99.7 4.7E-18 1.6E-22 131.1 8.4 84 116-200 13-96 (105)
204 2cq3_A RNA-binding protein 9; 99.7 2.2E-17 7.6E-22 126.8 12.1 83 116-200 12-94 (103)
205 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-17 3.9E-22 125.6 10.2 82 117-200 6-87 (92)
206 3ex7_B RNA-binding protein 8A; 99.7 1E-17 3.5E-22 133.9 10.5 85 116-200 19-103 (126)
207 1p1t_A Cleavage stimulation fa 99.7 5.2E-18 1.8E-22 130.7 8.4 82 119-200 8-89 (104)
208 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.6E-17 5.3E-22 138.1 11.7 85 115-199 35-119 (156)
209 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-17 7E-22 127.1 11.6 83 116-200 12-94 (103)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.7E-18 1.3E-22 130.3 7.2 82 116-199 16-98 (100)
211 1u6f_A Tcubp1, RNA-binding pro 99.7 1E-17 3.6E-22 136.3 10.3 86 115-200 38-123 (139)
212 2dgx_A KIAA0430 protein; RRM d 99.7 1.3E-17 4.4E-22 126.2 10.1 81 117-200 7-91 (96)
213 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.3E-18 1.1E-22 124.0 6.4 76 120-196 1-76 (77)
214 2cqp_A RNA-binding protein 12; 99.7 4.1E-18 1.4E-22 129.7 7.2 82 117-198 13-94 (98)
215 1whx_A Hypothetical protein ri 99.7 7.7E-18 2.6E-22 130.9 8.9 76 293-374 10-85 (111)
216 2hgn_A Heterogeneous nuclear r 99.7 1.5E-18 5E-23 139.5 4.8 81 292-375 45-125 (139)
217 2kvi_A Nuclear polyadenylated 99.7 5E-18 1.7E-22 128.6 7.4 77 292-376 9-86 (96)
218 2kt5_A RNA and export factor-b 99.7 2E-17 6.9E-22 131.7 11.3 86 115-201 31-116 (124)
219 2cpx_A Hypothetical protein FL 99.7 9.6E-18 3.3E-22 131.8 9.3 84 291-378 23-110 (115)
220 2hvz_A Splicing factor, argini 99.7 9.2E-18 3.1E-22 128.5 8.9 74 120-198 1-74 (101)
221 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-18 4.4E-23 133.3 4.0 83 292-376 16-98 (101)
222 2cq4_A RNA binding motif prote 99.7 6.9E-18 2.4E-22 132.3 8.3 81 119-200 25-105 (114)
223 2la4_A Nuclear and cytoplasmic 99.7 6.9E-18 2.3E-22 129.2 8.0 75 293-373 27-101 (101)
224 2hgl_A HNRPF protein, heteroge 99.7 2.4E-18 8.2E-23 137.8 5.6 81 292-374 43-126 (136)
225 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-18 9E-23 123.8 5.2 75 295-370 1-75 (75)
226 1x4a_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 127.8 11.2 82 116-200 19-100 (109)
227 2db1_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 134.5 6.1 81 292-374 16-99 (118)
228 1wg5_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 127.6 9.7 83 116-200 12-95 (104)
229 2do0_A HnRNP M, heterogeneous 99.7 3.1E-17 1.1E-21 128.6 11.5 81 117-198 13-93 (114)
230 2dgw_A Probable RNA-binding pr 99.7 2E-17 6.8E-22 124.0 10.0 81 116-199 7-87 (91)
231 2cqh_A IGF-II mRNA-binding pro 99.7 9.2E-18 3.1E-22 126.4 8.0 78 292-376 7-86 (93)
232 2cq2_A Hypothetical protein LO 99.7 2.2E-17 7.4E-22 126.7 10.0 78 292-375 24-108 (114)
233 1wez_A HnRNP H', FTP-3, hetero 99.7 8.2E-18 2.8E-22 128.4 7.7 81 115-198 11-91 (102)
234 2e5j_A Methenyltetrahydrofolat 99.7 9.9E-18 3.4E-22 127.2 8.0 80 291-375 17-96 (97)
235 1x5p_A Negative elongation fac 99.7 8.3E-17 2.8E-21 122.1 13.2 77 292-376 14-90 (97)
236 2dis_A Unnamed protein product 99.7 1.8E-17 6.1E-22 128.9 9.6 86 116-201 5-94 (109)
237 2hgl_A HNRPF protein, heteroge 99.7 6.9E-18 2.4E-22 135.2 7.3 82 116-199 41-125 (136)
238 2diu_A KIAA0430 protein; struc 99.7 3.8E-17 1.3E-21 118.3 10.4 75 294-378 9-89 (96)
239 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4E-22 127.0 8.2 81 292-375 7-91 (97)
240 2cqg_A TDP-43, TAR DNA-binding 99.7 4E-17 1.4E-21 125.4 11.2 83 116-200 12-94 (103)
241 2cpy_A RNA-binding protein 12; 99.7 7.8E-18 2.7E-22 131.8 7.3 82 116-199 12-94 (114)
242 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-17 4.2E-22 126.5 8.2 80 292-376 15-94 (96)
243 2cpi_A CCR4-NOT transcription 99.7 1.9E-17 6.4E-22 128.9 9.2 85 117-201 13-103 (111)
244 2m2b_A RNA-binding protein 10; 99.7 9.1E-18 3.1E-22 134.9 7.6 83 118-201 22-110 (131)
245 2krb_A Eukaryotic translation 99.7 7.9E-18 2.7E-22 123.1 6.5 73 119-193 1-80 (81)
246 2ki2_A SS-DNA binding protein 99.7 3E-18 1E-22 128.3 4.2 80 120-200 2-81 (90)
247 2cpj_A Non-POU domain-containi 99.7 2.8E-17 9.5E-22 125.3 9.6 85 116-206 12-96 (99)
248 3lqv_A PRE-mRNA branch site pr 99.7 2.4E-17 8.2E-22 129.4 9.5 81 293-376 8-88 (115)
249 2err_A Ataxin-2-binding protei 99.7 2.1E-17 7.1E-22 128.1 9.0 83 115-199 25-107 (109)
250 2db1_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 131.7 7.4 82 116-199 14-98 (118)
251 1x4b_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 129.9 9.1 81 119-200 27-107 (116)
252 2lmi_A GRSF-1, G-rich sequence 99.7 3.6E-18 1.2E-22 132.0 4.5 81 292-374 10-93 (107)
253 2a3j_A U1 small nuclear ribonu 99.7 3.6E-17 1.2E-21 129.5 10.3 83 116-201 26-112 (127)
254 1x4d_A Matrin 3; structural ge 99.7 1.9E-17 6.5E-22 125.2 8.4 81 116-202 12-95 (102)
255 1x4f_A Matrin 3; structural ge 99.7 8.4E-18 2.9E-22 129.0 6.4 84 116-205 22-108 (112)
256 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.5E-17 1.2E-21 133.5 10.6 81 116-196 60-140 (140)
257 3zzy_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 128.0 10.5 80 293-377 28-110 (130)
258 2cq1_A PTB-like protein L; RRM 99.7 5.5E-17 1.9E-21 122.9 10.7 77 117-199 13-91 (101)
259 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.3E-23 136.6 3.6 83 291-374 23-105 (124)
260 2ad9_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 126.9 9.8 80 115-200 27-108 (119)
261 2nlw_A Eukaryotic translation 99.7 1.9E-17 6.4E-22 127.5 8.1 80 118-199 14-100 (105)
262 2jwn_A Embryonic polyadenylate 99.7 3.2E-17 1.1E-21 130.6 9.5 80 119-199 36-115 (124)
263 2kn4_A Immunoglobulin G-bindin 99.7 3.6E-17 1.2E-21 136.3 10.2 83 117-199 68-150 (158)
264 1sjr_A Polypyrimidine tract-bi 99.7 6.5E-17 2.2E-21 131.9 11.2 79 293-375 46-126 (164)
265 1x5o_A RNA binding motif, sing 99.7 5.9E-17 2E-21 127.0 10.7 82 117-199 23-112 (114)
266 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.6E-22 126.4 8.6 78 119-199 16-93 (109)
267 2lea_A Serine/arginine-rich sp 99.7 9.1E-18 3.1E-22 135.3 6.0 83 117-199 45-127 (135)
268 1wex_A Hypothetical protein (r 99.7 6.3E-17 2.2E-21 123.4 10.4 78 117-200 13-92 (104)
269 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-17 9.7E-22 126.6 8.4 80 115-198 24-104 (111)
270 1iqt_A AUF1, heterogeneous nuc 99.7 1E-17 3.5E-22 120.6 5.6 75 121-196 1-75 (75)
271 2e5g_A U6 snRNA-specific termi 99.7 7.4E-17 2.5E-21 121.6 10.5 77 293-375 8-84 (94)
272 3beg_B Splicing factor, argini 99.7 4.5E-17 1.5E-21 127.5 9.1 76 293-375 16-96 (115)
273 2j8a_A Histone-lysine N-methyl 99.7 2.3E-17 7.8E-22 126.5 7.1 79 294-372 3-95 (136)
274 2dnq_A RNA-binding protein 4B; 99.7 1.2E-16 4.1E-21 119.4 10.9 77 116-200 5-81 (90)
275 1wel_A RNA-binding protein 12; 99.7 8.6E-18 2.9E-22 133.7 4.8 83 116-199 22-104 (124)
276 2hgm_A HNRPF protein, heteroge 99.7 1.8E-17 6.2E-22 130.4 6.6 80 292-374 41-122 (126)
277 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-17 4.2E-22 129.0 5.3 82 116-199 8-92 (107)
278 2la4_A Nuclear and cytoplasmic 99.7 9.1E-17 3.1E-21 122.9 10.0 80 113-198 21-100 (101)
279 1why_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 121.0 10.8 79 116-200 14-94 (97)
280 2e44_A Insulin-like growth fac 99.7 7.6E-17 2.6E-21 122.1 9.3 79 292-374 14-93 (96)
281 2fc9_A NCL protein; structure 99.7 8.1E-17 2.8E-21 123.2 9.5 81 116-200 12-92 (101)
282 1x4c_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 122.9 11.2 77 117-200 13-94 (108)
283 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-17 4.3E-22 131.1 4.8 80 293-374 23-106 (123)
284 1x4g_A Nucleolysin TIAR; struc 99.7 1.3E-16 4.3E-21 123.9 10.4 81 115-201 21-101 (109)
285 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 124.9 10.4 77 293-375 25-104 (124)
286 2xs2_A Deleted in azoospermia- 99.7 3.1E-17 1E-21 125.8 6.7 81 293-376 9-89 (102)
287 2f3j_A RNA and export factor b 99.7 6.2E-17 2.1E-21 136.6 9.0 85 290-375 85-169 (177)
288 1nu4_A U1A RNA binding domain; 99.7 5.3E-17 1.8E-21 123.3 7.8 83 116-201 5-91 (97)
289 1fj7_A Nucleolin RBD1, protein 99.7 8.4E-18 2.9E-22 128.7 3.3 82 117-200 15-96 (101)
290 1wg1_A KIAA1579 protein, homol 99.7 9E-17 3.1E-21 119.4 8.7 83 117-206 3-85 (88)
291 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7.3E-21 114.4 10.3 80 117-206 7-91 (96)
292 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.1E-21 119.3 11.1 79 113-199 16-95 (97)
293 2hgm_A HNRPF protein, heteroge 99.7 4.2E-17 1.5E-21 128.3 7.2 81 115-198 38-120 (126)
294 4f02_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 139.8 11.0 83 292-374 14-96 (213)
295 3d2w_A TAR DNA-binding protein 99.7 2E-16 6.8E-21 117.5 10.3 75 292-375 10-86 (89)
296 2e5j_A Methenyltetrahydrofolat 99.7 9.8E-17 3.4E-21 121.7 8.7 80 116-200 16-95 (97)
297 2fc8_A NCL protein; structure 99.7 1.2E-16 4.1E-21 122.5 9.3 83 115-200 11-93 (102)
298 2dha_A FLJ20171 protein; RRM d 99.7 3.3E-17 1.1E-21 128.8 6.2 81 116-198 20-104 (123)
299 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-16 7E-21 116.8 10.2 76 116-197 9-85 (85)
300 1wg1_A KIAA1579 protein, homol 99.7 1.4E-16 4.8E-21 118.4 9.2 75 293-374 5-79 (88)
301 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 7.7E-21 120.6 10.5 82 292-373 7-94 (105)
302 3pgw_A U1-A; protein-RNA compl 99.7 9.7E-16 3.3E-20 140.6 16.9 81 292-375 8-92 (282)
303 2j8a_A Histone-lysine N-methyl 99.7 6.1E-17 2.1E-21 124.1 7.2 79 120-198 3-95 (136)
304 2f3j_A RNA and export factor b 99.7 1.6E-16 5.5E-21 134.0 9.9 86 115-201 84-169 (177)
305 2voo_A Lupus LA protein; RNA-b 99.7 5.7E-16 2E-20 132.7 13.5 120 252-373 63-187 (193)
306 2cpx_A Hypothetical protein FL 99.7 3.1E-17 1.1E-21 128.8 4.7 81 116-200 22-106 (115)
307 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-16 3.5E-21 119.2 7.2 78 293-377 5-82 (88)
308 3egn_A RNA-binding protein 40; 99.7 2.2E-17 7.5E-22 135.0 3.8 82 292-376 44-133 (143)
309 2hgn_A Heterogeneous nuclear r 99.7 3E-17 1E-21 131.8 4.5 81 116-199 43-123 (139)
310 2dgt_A RNA-binding protein 30; 99.7 3.7E-16 1.3E-20 117.2 10.2 79 115-201 6-84 (92)
311 1b7f_A Protein (SXL-lethal pro 99.7 3.3E-16 1.1E-20 131.9 11.1 83 293-375 3-85 (168)
312 2jvo_A Nucleolar protein 3; nu 99.7 3.2E-16 1.1E-20 120.9 9.9 78 115-200 27-104 (108)
313 2dnp_A RNA-binding protein 14; 99.7 3.8E-16 1.3E-20 116.6 10.0 78 115-200 5-82 (90)
314 1fxl_A Paraneoplastic encephal 99.7 4.1E-16 1.4E-20 131.2 11.2 82 294-375 3-84 (167)
315 2lcw_A RNA-binding protein FUS 99.5 6.3E-18 2.2E-22 132.9 0.0 84 117-200 5-96 (116)
316 2dgu_A Heterogeneous nuclear r 99.7 4.7E-16 1.6E-20 119.3 10.1 76 117-200 9-84 (103)
317 2xs2_A Deleted in azoospermia- 99.7 1.4E-16 4.7E-21 122.1 7.0 81 118-201 8-88 (102)
318 2kvi_A Nuclear polyadenylated 99.7 2.9E-16 1E-20 118.7 8.5 76 116-199 7-83 (96)
319 2hzc_A Splicing factor U2AF 65 99.7 4.9E-16 1.7E-20 115.3 9.5 70 293-369 6-86 (87)
320 2cpd_A Apobec-1 stimulating pr 99.7 9.4E-16 3.2E-20 116.7 11.2 76 117-200 13-90 (99)
321 1whx_A Hypothetical protein ri 99.6 3.8E-16 1.3E-20 121.3 9.1 75 118-198 9-83 (111)
322 3tyt_A Heterogeneous nuclear r 99.6 5.8E-16 2E-20 134.2 11.2 77 293-374 4-81 (205)
323 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-16 4.6E-21 120.8 6.3 79 117-200 14-92 (96)
324 2i2y_A Fusion protein consists 99.6 5.8E-16 2E-20 127.6 10.0 80 115-199 69-148 (150)
325 2e44_A Insulin-like growth fac 99.6 4.9E-16 1.7E-20 117.6 8.6 79 117-199 13-92 (96)
326 2dnl_A Cytoplasmic polyadenyla 99.6 8.1E-16 2.8E-20 120.2 9.5 78 117-197 6-86 (114)
327 2cqh_A IGF-II mRNA-binding pro 99.6 4.1E-16 1.4E-20 117.3 7.3 78 116-200 5-84 (93)
328 2e5g_A U6 snRNA-specific termi 99.6 1E-15 3.5E-20 115.2 9.4 77 117-199 6-82 (94)
329 3egn_A RNA-binding protein 40; 99.6 6.9E-16 2.3E-20 126.1 8.8 82 115-199 41-130 (143)
330 2bz2_A Negative elongation fac 99.6 6.9E-16 2.4E-20 121.5 8.3 77 292-376 38-114 (121)
331 2cq2_A Hypothetical protein LO 99.6 9.3E-16 3.2E-20 117.6 8.7 79 113-197 19-104 (114)
332 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-15 5.5E-20 118.5 10.2 77 293-372 8-87 (114)
333 1wf1_A RNA-binding protein RAL 99.6 9E-16 3.1E-20 119.2 8.7 74 118-199 26-100 (110)
334 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 123.9 10.2 80 117-200 44-125 (164)
335 1l3k_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 131.4 10.9 84 291-375 11-94 (196)
336 3md3_A Nuclear and cytoplasmic 99.6 2.1E-15 7.1E-20 126.7 11.5 82 116-197 84-165 (166)
337 1x5p_A Negative elongation fac 99.6 2.3E-15 7.9E-20 114.0 10.5 77 116-200 12-88 (97)
338 3u1l_A PRE-mRNA-splicing facto 99.6 1.2E-15 4.3E-20 133.1 10.0 81 289-375 130-231 (240)
339 3zzy_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 118.6 9.9 79 117-200 26-107 (130)
340 2pe8_A Splicing factor 45; RRM 99.6 3.4E-15 1.2E-19 114.0 10.9 83 116-198 5-93 (105)
341 3pgw_S U1-70K; protein-RNA com 99.6 1.6E-15 5.6E-20 146.1 11.1 83 117-199 100-182 (437)
342 3d2w_A TAR DNA-binding protein 99.6 2.4E-15 8.3E-20 111.6 9.4 77 115-200 7-85 (89)
343 3v4m_A Splicing factor U2AF 65 99.6 3E-15 1E-19 114.4 10.1 82 292-373 4-97 (105)
344 3beg_B Splicing factor, argini 99.6 1.4E-15 4.9E-20 118.9 8.4 74 118-198 15-93 (115)
345 2dit_A HIV TAT specific factor 99.6 6.1E-15 2.1E-19 114.7 11.8 83 291-377 13-106 (112)
346 2g4b_A Splicing factor U2AF 65 99.6 2.7E-15 9.3E-20 126.8 10.5 80 117-196 92-171 (172)
347 2hzc_A Splicing factor U2AF 65 99.6 2.6E-15 8.8E-20 111.4 8.8 72 117-195 4-86 (87)
348 2qfj_A FBP-interacting repress 99.6 4E-15 1.4E-19 130.8 11.3 84 117-200 123-206 (216)
349 2yh0_A Splicing factor U2AF 65 99.6 4.6E-15 1.6E-19 128.5 10.6 84 116-199 111-194 (198)
350 2e5i_A Heterogeneous nuclear r 99.6 7.1E-15 2.4E-19 115.0 10.3 75 120-200 26-103 (124)
351 2cjk_A Nuclear polyadenylated 99.6 2.1E-15 7.3E-20 126.8 7.6 80 119-199 87-166 (167)
352 3nmr_A Cugbp ELAV-like family 99.6 6E-15 2E-19 125.1 8.9 83 293-375 3-90 (175)
353 2adc_A Polypyrimidine tract-bi 99.6 2.5E-14 8.6E-19 126.7 12.6 83 288-375 29-112 (229)
354 3ue2_A Poly(U)-binding-splicin 99.6 8.8E-15 3E-19 113.9 8.2 81 292-372 19-108 (118)
355 2bz2_A Negative elongation fac 99.5 1.4E-14 4.7E-19 114.0 9.1 78 115-200 35-112 (121)
356 3sde_A Paraspeckle component 1 99.5 1.3E-14 4.5E-19 131.2 10.0 80 288-373 17-96 (261)
357 1jmt_A Splicing factor U2AF 35 99.5 4.5E-15 1.6E-19 113.2 5.7 72 298-370 20-103 (104)
358 1wf0_A TDP-43, TAR DNA-binding 99.5 4.3E-15 1.5E-19 110.4 5.4 77 117-200 3-79 (88)
359 2voo_A Lupus LA protein; RNA-b 99.5 2.8E-14 9.6E-19 122.2 10.5 78 119-198 109-186 (193)
360 1qm9_A Polypyrimidine tract-bi 99.5 2.8E-14 9.5E-19 123.6 9.4 77 294-375 4-81 (198)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-13 3.9E-18 104.0 11.1 67 303-376 27-93 (100)
362 2dit_A HIV TAT specific factor 99.5 9E-14 3.1E-18 108.1 10.3 84 114-201 10-104 (112)
363 1fje_B Nucleolin RBD12, protei 99.5 3.8E-14 1.3E-18 120.1 8.9 77 118-199 98-174 (175)
364 3u1l_A PRE-mRNA-splicing facto 99.5 4.9E-14 1.7E-18 123.1 9.1 79 116-200 131-230 (240)
365 3v4m_A Splicing factor U2AF 65 99.5 9.6E-14 3.3E-18 106.0 9.1 81 118-198 4-96 (105)
366 3s6e_A RNA-binding protein 39; 99.5 2.7E-13 9.2E-18 104.6 9.1 78 292-373 6-93 (114)
367 3ue2_A Poly(U)-binding-splicin 99.4 2.3E-13 8E-18 105.8 8.4 81 118-198 19-108 (118)
368 1jmt_A Splicing factor U2AF 35 99.4 6.2E-14 2.1E-18 106.9 4.2 72 124-196 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.4 5.7E-13 1.9E-17 122.8 10.6 75 291-371 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.2E-16 92.9 10.3 75 119-200 10-91 (100)
371 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5.2E-16 94.8 9.6 79 116-198 4-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 7.7E-12 2.6E-16 115.3 8.8 79 113-197 12-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 2.7E-11 9.1E-16 87.0 8.8 73 292-373 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 3.9E-11 1.3E-15 92.4 9.4 77 290-372 15-95 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 1.7E-10 5.7E-15 88.8 9.1 76 116-197 15-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 1.9E-10 6.3E-15 82.6 8.2 73 117-198 5-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 1.5E-10 5E-15 83.4 5.0 73 291-372 13-94 (95)
378 3dxb_A Thioredoxin N-terminall 99.0 3.5E-09 1.2E-13 93.0 12.5 68 305-372 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 1.7E-09 5.7E-14 78.0 6.8 73 115-196 11-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1.8E-08 6.3E-13 88.3 8.9 81 118-198 123-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.8 2.2E-08 7.6E-13 73.4 7.4 71 294-370 22-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 1.2E-06 4.1E-11 64.3 10.2 74 117-196 19-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1.7E-05 5.9E-10 57.8 11.2 86 118-212 7-99 (104)
384 1wey_A Calcipressin 1; structu 98.2 4.9E-06 1.7E-10 61.1 7.1 74 294-373 6-84 (104)
385 1wey_A Calcipressin 1; structu 97.9 3.5E-05 1.2E-09 56.5 6.5 75 118-198 4-83 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.00019 6.4E-09 52.4 10.1 74 293-375 8-86 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 9.8E-05 3.4E-09 53.3 7.2 69 120-188 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.0004 1.4E-08 50.1 9.7 78 294-371 2-86 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.6 0.0005 1.7E-08 52.0 9.1 72 293-372 24-96 (119)
390 1whv_A Poly(A)-specific ribonu 97.3 0.00068 2.3E-08 48.8 6.6 59 115-182 12-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.001 3.5E-08 50.3 7.9 72 118-197 23-95 (119)
392 1whv_A Poly(A)-specific ribonu 97.1 0.00088 3E-08 48.2 5.4 54 294-356 17-70 (100)
393 2l08_A Regulator of nonsense t 97.0 0.003 1E-07 45.7 7.7 78 294-371 10-94 (97)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.00084 2.9E-08 48.5 4.5 54 294-356 7-60 (101)
395 2l08_A Regulator of nonsense t 96.9 0.00081 2.8E-08 48.7 4.2 71 118-188 8-80 (97)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0018 6.1E-08 46.8 5.2 53 121-182 8-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.4 0.0051 1.7E-07 47.1 5.5 77 294-372 8-98 (132)
398 3p3d_A Nucleoporin 53; structu 96.1 0.0049 1.7E-07 47.2 4.1 77 119-197 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.0076 2.6E-07 57.5 3.5 55 119-179 53-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.3 0.0062 2.1E-07 58.1 2.3 55 294-354 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 86.2 1.5 5.2E-05 42.6 7.3 55 293-356 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 85.6 1.9 6.6E-05 41.9 7.7 56 119-183 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 76.0 6.9 0.00024 26.6 5.8 60 303-371 11-75 (76)
404 4eyt_A Telomerase associated p 64.3 33 0.0011 23.8 7.3 55 293-355 12-66 (129)
405 4eyt_A Telomerase associated p 63.8 34 0.0012 23.7 9.0 59 117-183 10-68 (129)
406 2g0c_A ATP-dependent RNA helic 60.5 32 0.0011 23.1 6.5 67 121-196 2-74 (76)
407 4e8u_A Putative uncharacterize 40.0 58 0.002 26.1 5.7 50 121-173 14-74 (172)
408 3fry_A Probable copper-exporti 35.6 89 0.0031 20.2 5.8 54 294-354 7-60 (73)
409 4e8u_A Putative uncharacterize 31.1 45 0.0015 26.8 3.7 57 294-353 13-81 (172)
410 3j21_T 50S ribosomal protein L 30.8 92 0.0032 21.7 4.9 52 300-354 29-82 (86)
411 2i9x_A Putative septation prot 29.9 49 0.0017 23.2 3.3 26 319-344 5-30 (87)
412 2pk2_A Cyclin-T1, protein TAT; 28.6 12 0.00041 34.4 0.0 12 304-315 228-239 (358)
413 3tj1_A RNA polymerase I-specif 28.5 13 0.00043 37.0 0.2 9 135-143 385-393 (649)
414 3ts2_A Protein LIN-28 homolog 27.4 13 0.00045 29.2 0.0 28 308-343 2-29 (148)
415 4aco_A Centromere DNA-binding 27.3 13 0.00045 37.5 0.0 17 125-141 749-765 (956)
416 2ia9_A Putative septation prot 26.2 60 0.0021 23.4 3.3 26 319-344 5-30 (100)
417 2i9z_A Putative septation prot 26.0 62 0.0021 23.5 3.4 26 319-344 5-30 (105)
418 1igq_A Transcriptional repress 25.1 82 0.0028 20.3 3.4 22 148-170 21-42 (62)
419 4bby_A Alkyldihydroxyacetoneph 24.4 55 0.0019 32.9 4.0 46 309-355 359-408 (658)
420 2e5p_A Protein PHF1, PHD finge 22.9 57 0.0019 21.3 2.3 19 318-344 28-46 (68)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.1e-44 Score=332.90 Aligned_cols=246 Identities=18% Similarity=0.328 Sum_probs=226.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||+++|+++|+++|+.|| |..|.+ ++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 578999999999999999999999999 999988 5578999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
...+|||+|||..+++++|+++|..+|. |..+.++.+ ..++.++|||||.|.+..+|..|+..+++. .+.++.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEE
Confidence 9999999999999999999999999999 999999987 567889999999999999999999999984 568899999
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCC-CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
.++.+.... ......++|||+|||..+ |+++|+++|+.||.|..|+|+++. ++.++|||||+|.+.++|.+|+..||
T Consensus 170 ~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 170 HWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp EECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 999876543 233456899999999995 999999999999999999999987 56669999999999999999999999
Q ss_pred CceeCCeEeEEEeCCCCCCC
Q 013087 357 KYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 357 g~~i~gr~l~v~~a~~~~~~ 376 (449)
|..|+|+.|+|.|+.++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3e-44 Score=333.20 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=215.2
Q ss_pred hhcCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 112 LLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 112 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
....++..++|||+|||+++|+++|+++|+.||.|..|+|+.++. + ++|||||+|.+.++|.+|++ +++..|.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 334556789999999999999999999999999999999999874 3 58999999999999999996 99999999999
Q ss_pred EEeecccccccccCCCCCCCCHHHHHHHHHhhC-CCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCccc
Q 013087 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (449)
Q Consensus 192 ~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g-~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (449)
.|.++. .++|||+|||..+++++|+++|..+| . |..+.++.+.. +.++|||||.|.+..+|..|+..+++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999874 67899999999999999999999999 7 99999998743 778999999999999999999999975 56
Q ss_pred CCCCCeeeeCCCCCccc---cccccccEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCCC-CCCcccEEEEEeCCH
Q 013087 271 DDNAPTVSWADPRNAES---SAASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKP-GQERSRYGFVHFAER 345 (449)
Q Consensus 271 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~-~~~~kg~afV~F~~~ 345 (449)
.++.+.+.++.+..... ......++|||+|||+. +|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 78999999988765443 23445689999999999 99999999999999999999999887 477799999999999
Q ss_pred HHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 346 ~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++|.+|+ .|||..|+|+.|+|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6e-37 Score=269.91 Aligned_cols=171 Identities=22% Similarity=0.375 Sum_probs=153.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
+.+||||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
....
T Consensus 94 ~~~~---------------------------------------------------------------------------- 97 (213)
T 4f02_A 94 RDPS---------------------------------------------------------------------------- 97 (213)
T ss_dssp CCTH----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3211
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
.......+|||+|||+.+|+++|+++|+.||.|..|+|+++.. .++|||||+|.+.++|.+||..|||
T Consensus 98 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 98 ----------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ----------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ----------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCC
Confidence 0001127899999999999999999999999999999998753 3589999999999999999999999
Q ss_pred ceeCCeEeEEEeCCCCCCC
Q 013087 358 YEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~~~~ 376 (449)
..|+|++|+|.||.++..+
T Consensus 166 ~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp CEETTEECEEEECCCHHHH
T ss_pred CEECCEEEEEEEcCCCccc
Confidence 9999999999999886543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8e-35 Score=253.60 Aligned_cols=181 Identities=20% Similarity=0.415 Sum_probs=152.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|+.||.|..|+|+.++.+|.++|||||+|.+.++|.+|+. +++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999998 59999999999998
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
++.......
T Consensus 88 ~~~~~~~~~----------------------------------------------------------------------- 96 (196)
T 1l3k_A 88 RAVSREDSQ----------------------------------------------------------------------- 96 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCccccc-----------------------------------------------------------------------
Confidence 875431100
Q ss_pred CeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
........++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..
T Consensus 97 -----------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 97 -----------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp -----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred -----------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 000011228999999999999999999999999999999999998888999999999999999999996
Q ss_pred cCCceeCCeEeEEEeCCCCCCCCCC
Q 013087 355 TEKYEIDGQVLDCSLAKPQADQKTS 379 (449)
Q Consensus 355 lng~~i~gr~l~v~~a~~~~~~~~~ 379 (449)
++..|+|+.|.|.|+.++......
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp -SCCEETTEECEEEECC--------
T ss_pred -CCcEECCEEEEEEecCChhHhccc
Confidence 899999999999999988775543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=245.33 Aligned_cols=166 Identities=20% Similarity=0.376 Sum_probs=151.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
++|||+|||+++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999976 889999999999999999999999999999999999887532
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 013087 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (449)
Q Consensus 200 ~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (449)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
......++|||+|||..+|+++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..|||..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 001123799999999999999999999999999999999998889999999999999999999999999999
Q ss_pred eCCeEeEEEeCCC
Q 013087 360 IDGQVLDCSLAKP 372 (449)
Q Consensus 360 i~gr~l~v~~a~~ 372 (449)
|+|+.|+|.||+.
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999873
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.6e-34 Score=251.39 Aligned_cols=182 Identities=23% Similarity=0.411 Sum_probs=155.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||+++|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999999889999999999999999999999999999999999997765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
..... ....... .
T Consensus 107 ~~~~~----------~~~~~~~----------------------------------------~----------------- 119 (216)
T 2qfj_A 107 NIGQA----------QPIIDQL----------------------------------------A----------------- 119 (216)
T ss_dssp CCGGG----------HHHHHHH----------------------------------------H-----------------
T ss_pred Ccccc----------chhhhhh----------------------------------------h-----------------
Confidence 33210 0000000 0
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
......++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||
T Consensus 120 ----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 120 ----------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp ----------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ----------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 0011238999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ceeCCeEeEEEeCCCCCCC
Q 013087 358 YEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~~~~ 376 (449)
..|+|+.|+|.|+.++...
T Consensus 190 ~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 190 FDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CBCSSSBCEEEECSSCSST
T ss_pred CEeCCcEEEEEEecCCCCC
Confidence 9999999999999976543
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.3e-34 Score=243.28 Aligned_cols=165 Identities=30% Similarity=0.481 Sum_probs=152.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
.+++|||+|||+++|+++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999998875
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3211
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
....++|||+|||..+|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..|||
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01127999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ceeCC--eEeEEEeC
Q 013087 358 YEIDG--QVLDCSLA 370 (449)
Q Consensus 358 ~~i~g--r~l~v~~a 370 (449)
..|.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.2e-34 Score=240.93 Aligned_cols=164 Identities=28% Similarity=0.474 Sum_probs=151.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+++|+.||.|..|++++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999987753
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 013087 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (449)
Q Consensus 199 ~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (449)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred eCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCc
Q 013087 279 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358 (449)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 358 (449)
....++|||+|||..+|+++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|++.|||.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011278999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eeCCeE--eEEEeC
Q 013087 359 EIDGQV--LDCSLA 370 (449)
Q Consensus 359 ~i~gr~--l~v~~a 370 (449)
.|.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888886
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.1e-34 Score=244.19 Aligned_cols=165 Identities=20% Similarity=0.475 Sum_probs=150.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
++++|||+|||+++|+++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999899999999999999999999997 4678999999887664
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng 357 (449)
....++|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. +|+
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012789999999999999999999999999999999999888899999999999999999998 899
Q ss_pred ceeCCeEeEEEeCCCC
Q 013087 358 YEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 358 ~~i~gr~l~v~~a~~~ 373 (449)
..|+|++|+|.||.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.4e-33 Score=236.23 Aligned_cols=166 Identities=22% Similarity=0.407 Sum_probs=145.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCC--CcccEEEEEecCHHHHHHHHHHhCCCccc---CeeEE
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELK---GKKIK 192 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~A~~Al~~l~g~~i~---g~~l~ 192 (449)
..++|||+|||+++|+++|+++|++||.|..|++++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999998876 56666
Q ss_pred EeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCC
Q 013087 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272 (449)
Q Consensus 193 v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 272 (449)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 655543211
Q ss_pred CCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 273 NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
.....++|||+|||+.+|+++|+++|++||.|..|++++++. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 011237899999999999999999999999999999999875 667999999999999999999
Q ss_pred HHcCCceeC---CeEeEEEeCC
Q 013087 353 KNTEKYEID---GQVLDCSLAK 371 (449)
Q Consensus 353 ~~lng~~i~---gr~l~v~~a~ 371 (449)
..|||..+. +++|+|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999984
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3.5e-32 Score=231.64 Aligned_cols=159 Identities=19% Similarity=0.403 Sum_probs=143.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i 186 (449)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .+++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 78888774 45799999999999999999 7999999
Q ss_pred cCeeEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCC
Q 013087 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (449)
Q Consensus 187 ~g~~l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (449)
.|+.|+|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999986643210
Q ss_pred CcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHH
Q 013087 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (449)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~ 346 (449)
....++|||+|||..+|+++|+++|++||.|..|++++++.++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 001289999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 347 SAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 347 ~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+|.+|+..|||..|+|+.|+|.||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999984
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=6.3e-32 Score=235.64 Aligned_cols=183 Identities=19% Similarity=0.358 Sum_probs=149.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i 186 (449)
..++|||+|||+++|+++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 6777776 456899999999999999999 7999999
Q ss_pred cCeeEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCC
Q 013087 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (449)
Q Consensus 187 ~g~~l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (449)
.|+.|+|.++.......-..- . .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~-----------------------------~----------------------------~ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSE-----------------------------N----------------------------P 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSS-----------------------------C----------------------------S
T ss_pred cCceEEEeCCCCCCCCCCCcC-----------------------------C----------------------------C
Confidence 999999998765322100000 0 0
Q ss_pred CcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHH
Q 013087 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (449)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~ 346 (449)
.. ..+...........++|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.+
T Consensus 99 ~~-----------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 SV-----------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp SC-----------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred cC-----------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 00 0000000111234589999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHcCCceeCCeEeEEEeCCCCCC
Q 013087 347 SAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (449)
Q Consensus 347 ~A~~A~~~lng~~i~gr~l~v~~a~~~~~ 375 (449)
+|.+|+..|||..|+|+.|+|.|++++..
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999997654
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=6.3e-33 Score=236.97 Aligned_cols=166 Identities=20% Similarity=0.340 Sum_probs=143.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999999999999999999998766 334445568899999999999999999995 99999999999998
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
++.....
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8764311
Q ss_pred CeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
......++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..
T Consensus 94 -------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 -------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp -------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred -------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 001123899999999999999999999999988777 44566799999999999999999999
Q ss_pred cCCceeCCeEeEEEeCCCC
Q 013087 355 TEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 355 lng~~i~gr~l~v~~a~~~ 373 (449)
|||..|.|+.|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=1.3e-30 Score=240.24 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=152.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
....++|||+|||+++|+++|+ ++|++||.|..|++++ +++++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999976 8999999999999987 48899999999999999999999999999999999
Q ss_pred EEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecC----CH-HHHHHHHHHcCCC
Q 013087 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY----NH-ACAEYSRQKMSNP 266 (449)
Q Consensus 192 ~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~----~~-~~a~~a~~~~~~~ 266 (449)
+|.++.............. .+......-..... ...................+-+.-. .. ..+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTF-VERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCc-ccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999876543222111111 01000000000000 0000000000000000000000000 00 0000000000000
Q ss_pred CcccC------CCCC-eeee-------------CCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEec
Q 013087 267 KFKLD------DNAP-TVSW-------------ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326 (449)
Q Consensus 267 ~~~~~------~~~~-~~~~-------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~ 326 (449)
..... .... ...+ ..+...........++|||+|||..+|+++|+++|++||.|..|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 0000 0000 00000001223346899999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC-CeEeEEEeCC
Q 013087 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAK 371 (449)
Q Consensus 327 ~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~-gr~l~v~~a~ 371 (449)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 764 589999999999999999999999999 9999999986
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.4e-30 Score=231.80 Aligned_cols=194 Identities=20% Similarity=0.326 Sum_probs=149.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
...+++|||+|||+ ++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35689999999999 99999999999999999999999874 6899999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (449)
++....... +...... .... -.|.. ....
T Consensus 106 ~a~~~~~~~----~~~~~~~------------------------~~~~-----~~~~~-------------~~~~----- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQED------------------------QGLT-----KDYGN-------------SPLH----- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSST------------------------TTTE-----EECTT-------------CSSC-----
T ss_pred EecCccccC----ccccccc------------------------cccc-----ccccc-------------Cccc-----
Confidence 987543211 1100000 0000 00000 0000
Q ss_pred CeeeeCCCC-CccccccccccEEEEcCCCcCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHH
Q 013087 275 PTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (449)
Q Consensus 275 ~~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~ 352 (449)
....+. ........+.++|||+|||..+|+++|+++|++|| .|..|+|+... +|||||+|.+.++|.+|+
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 135 ---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHH
T ss_pred ---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHH
Confidence 000000 00011223458999999999999999999999999 99999997642 789999999999999999
Q ss_pred HHcCCceeC-CeEeEEEeCCCC
Q 013087 353 KNTEKYEID-GQVLDCSLAKPQ 373 (449)
Q Consensus 353 ~~lng~~i~-gr~l~v~~a~~~ 373 (449)
..|||..|. |+.|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999864
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=7.9e-31 Score=228.00 Aligned_cols=194 Identities=20% Similarity=0.296 Sum_probs=143.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIP-HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
.+++|||+||| +.+|+++|+++|++||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCe
Q 013087 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (449)
Q Consensus 197 ~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (449)
..... .|..... ...+. ..+-.|... .. ..
T Consensus 78 ~~~~~-----~p~~~~~-----------------------~~~~~---~~~~~~~~~-------------~~----~r-- 107 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG-----------------------LEDGS---CSYKDFSES-------------RN----NR-- 107 (205)
T ss_dssp SCSCC-----CCCSCCB-----------------------CTTSC---BSEEECTTC-------------TT----CS--
T ss_pred cCCcc-----CCCcccc-----------------------cccCC---ccccccCCC-------------cc----cc--
Confidence 65432 1110000 00000 000000000 00 00
Q ss_pred eeeCCCC-CccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcE--EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 013087 277 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (449)
Q Consensus 277 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v--~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~ 353 (449)
+..+. ........+.++|||+|||+.+|+++|+++|++||.| ..|+++.+. +.++|||||+|.+.++|.+||.
T Consensus 108 --~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 108 --FSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp --CSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHH
T ss_pred --ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHH
Confidence 00000 0000012234899999999999999999999999998 899998876 3336999999999999999999
Q ss_pred HcCCceeCCe----EeEEEeC
Q 013087 354 NTEKYEIDGQ----VLDCSLA 370 (449)
Q Consensus 354 ~lng~~i~gr----~l~v~~a 370 (449)
.|||..|.|+ ++.|.||
T Consensus 184 ~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTTCEECCSSSSSCEECEEE
T ss_pred HhCCCCccCCCCCcceEEEec
Confidence 9999999886 5777664
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.6e-30 Score=226.61 Aligned_cols=192 Identities=20% Similarity=0.323 Sum_probs=147.4
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 119 GSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 119 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
+++|||+|||+ ++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998874 6899999999999999999999999999999999987
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCee
Q 013087 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (449)
Q Consensus 198 ~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (449)
..... ++..... .....+. |.... ...+. .
T Consensus 78 ~~~~~----~~~~~~~------------------------~~~~~~~-----~~~~~----------~~r~~--~----- 107 (198)
T 1qm9_A 78 HQNVQ----LPREGQE------------------------DQGLTKD-----YGNSP----------LHRFK--K----- 107 (198)
T ss_dssp CCSCC----CSSSSSS------------------------SSSCEEE-----SSCCC----------TTSSS--S-----
T ss_pred CCCcC----CCCcCCc------------------------ccccccc-----ccCCc----------hhhcc--C-----
Confidence 54321 1110000 0000000 00000 00000 0
Q ss_pred eeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
...........+.++|||+|||..+|+++|+++|+.|| .|..|+|+++. +|||||+|.+.++|.+|+..||
T Consensus 108 ---~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 108 ---PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp ---CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHT
T ss_pred ---ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhc
Confidence 00000011123458999999999999999999999999 99999997653 7899999999999999999999
Q ss_pred CceeC-CeEeEEEeCCCC
Q 013087 357 KYEID-GQVLDCSLAKPQ 373 (449)
Q Consensus 357 g~~i~-gr~l~v~~a~~~ 373 (449)
|..|+ |+.|+|.|++++
T Consensus 180 g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 180 NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCCSSCCSCCEEEECCC
T ss_pred CCccCCCCeEEEEeeccc
Confidence 99999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.1e-30 Score=234.24 Aligned_cols=160 Identities=25% Similarity=0.405 Sum_probs=144.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|+.||.|..|++.+ ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999954 468999999999999999999999999999999977
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCC
Q 013087 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (449)
Q Consensus 196 ~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (449)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 631
Q ss_pred eeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
..+|||+|||+.+|+++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 178999999999999999999999999999999998 46777999999999999999999999
Q ss_pred C-CceeC---CeEeEEEeCCCCCCC
Q 013087 356 E-KYEID---GQVLDCSLAKPQADQ 376 (449)
Q Consensus 356 n-g~~i~---gr~l~v~~a~~~~~~ 376 (449)
| +..+. +|+|.|.++.+....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 55554 999999999876543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=2.7e-25 Score=204.79 Aligned_cols=165 Identities=19% Similarity=0.356 Sum_probs=152.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
.+..++|||+|||+++|+++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccc---------cccccCCCCCCC-CHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHHHHcCC
Q 013087 196 AQAK---------HRLFIGNVPRNW-GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (449)
Q Consensus 196 ~~~~---------~~~~v~~lp~~~-~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (449)
+.+. ++|+|+|||..+ ++++|+++|..||. |..+.++.++ .+.++|+|||.|.+..+|.+|+..+++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8754 479999999996 99999999999998 9999999874 688999999999999999999999998
Q ss_pred CCcccCCCCCeeeeCCCCCc
Q 013087 266 PKFKLDDNAPTVSWADPRNA 285 (449)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (449)
. .+.++.+.+.++.+...
T Consensus 249 ~--~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 L--SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp C--EETTEECEEEECCSSSC
T ss_pred C--ccCCeEEEEEEecCCCc
Confidence 6 45888999999987754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=1e-24 Score=201.70 Aligned_cols=163 Identities=18% Similarity=0.334 Sum_probs=141.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
....++|||+|||+++|+++|+++|+.|| .|..|+++.++. +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34689999999999999999999999999 999999999877 8899999999999999999999999999999999999
Q ss_pred eccc-------------ccccccCCCCCC-CCHHHHHHHHHhhCCCcEEEEEecCCCCCCCCeeEEEEecCCHHHHHHHH
Q 013087 195 AAQA-------------KHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260 (449)
Q Consensus 195 ~~~~-------------~~~~~v~~lp~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 260 (449)
++.+ ..+|||+|||.. +++++|+++|..||. |..+.++.++..++.++|||||.|.+..+|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8753 257999999999 999999999999998 9999999874435889999999999999999999
Q ss_pred HHcCCCCcccCCCCCeeeeCCCC
Q 013087 261 QKMSNPKFKLDDNAPTVSWADPR 283 (449)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~ 283 (449)
.+++. .+.++.+.+.|+.++
T Consensus 272 -~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTE--EETTEEEEEEECCCC
T ss_pred -HhcCC--EECCcEEEEEEecCC
Confidence 99874 567889999988764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.5e-23 Score=175.22 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=80.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 48999999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 150 ~~~~ 153 (158)
T 2kn4_A 150 GRPP 153 (158)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6554
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=6.4e-22 Score=163.55 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=112.7
Q ss_pred CCcccEEEEEecCHHHHHHHHHHh-CCCcccCeeEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCcEEEEEecCC
Q 013087 158 GEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236 (449)
Q Consensus 158 g~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 236 (449)
...+|+++|+|.+.++|.+|++.+ ||..+.| .|.+.++.............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~--------------------------- 61 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH--------------------------- 61 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC---------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc---------------------------
Confidence 467899999999999999999999 9999999 99998775432210000000
Q ss_pred CCCCCCeeEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhc
Q 013087 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 316 (449)
Q Consensus 237 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~ 316 (449)
............++|||+|||+.+|+++|+++|++
T Consensus 62 ---------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 62 ---------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp ---------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred ---------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 00000112223489999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCC
Q 013087 317 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (449)
Q Consensus 317 ~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~ 374 (449)
||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 38999999999999999999999999999999999998764
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=151.41 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=78.1
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+.++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 013087 372 P 372 (449)
Q Consensus 372 ~ 372 (449)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 24
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.87 E-value=3.1e-23 Score=182.89 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=78.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
.++|||+|||+.+|+++|+++|++|| .|..|+|++++.++.+||||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 37999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 013087 371 KPQA 374 (449)
Q Consensus 371 ~~~~ 374 (449)
++..
T Consensus 148 ~~~~ 151 (229)
T 3q2s_C 148 NKQF 151 (229)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 8643
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=146.98 Aligned_cols=82 Identities=34% Similarity=0.585 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+++|||+|||+++|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.5e-21 Score=153.16 Aligned_cols=97 Identities=21% Similarity=0.415 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
|...++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999986 45899999999999999999999999999999999998
Q ss_pred cccc--------------cccccCCCCCCCCHH
Q 013087 196 AQAK--------------HRLFIGNVPRNWGED 214 (449)
Q Consensus 196 ~~~~--------------~~~~v~~lp~~~~~~ 214 (449)
+.++ .+|||+|||+.+|++
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp SSCCCC---------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 7643 368999999988875
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=146.40 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=77.0
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC-CceeCCeEeEEEeCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE-KYEIDGQVLDCSLAK 371 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln-g~~i~gr~l~v~~a~ 371 (449)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+|+..++ +..|.||+|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7899999999999999999999999 79999999999999999999999999999999999874 667999999999998
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=140.62 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=81.2
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 372 PQADQK 377 (449)
Q Consensus 372 ~~~~~~ 377 (449)
++....
T Consensus 87 ~~~~~~ 92 (99)
T 1whw_A 87 IKKEAS 92 (99)
T ss_dssp CCSTTC
T ss_pred CCcccc
Confidence 876643
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=143.74 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=75.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCc--EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCc----eeCCeEeE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDGQVLD 366 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~--v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~----~i~gr~l~ 366 (449)
..+|||+|||+.+|+++|+++|++||. |.+|+|++++.++.+||||||+|.+.++|.+|++.|||. .|+||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 389999999999999999999999996 568999999999999999999999999999999999986 59999999
Q ss_pred EEeCCC
Q 013087 367 CSLAKP 372 (449)
Q Consensus 367 v~~a~~ 372 (449)
|+||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999985
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=144.51 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=79.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
...
T Consensus 86 ~~~ 88 (110)
T 3s8s_A 86 GQQ 88 (110)
T ss_dssp THH
T ss_pred CcH
Confidence 543
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=139.94 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=80.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 48999999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 85 ~~~~ 88 (95)
T 2dnz_A 85 RLDG 88 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6653
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=141.68 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=82.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34458999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 013087 370 AKPQADQKT 378 (449)
Q Consensus 370 a~~~~~~~~ 378 (449)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (105)
T 1x5u_A 92 ASAHNKNLS 100 (105)
T ss_dssp TTTTSCCCC
T ss_pred CCCCCcCCC
Confidence 998766443
No 33
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=4e-20 Score=153.82 Aligned_cols=86 Identities=22% Similarity=0.376 Sum_probs=80.9
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=139.38 Aligned_cols=87 Identities=23% Similarity=0.455 Sum_probs=81.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345899999999999999999999999999999999999989999999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 013087 371 KPQADQKT 378 (449)
Q Consensus 371 ~~~~~~~~ 378 (449)
.++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98766443
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.8e-19 Score=141.60 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=82.1
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876644
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=140.36 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=81.4
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEE-EecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v-~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+.+|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34899999999999999999999999999999 99999888989999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 371 KPQADQKT 378 (449)
Q Consensus 371 ~~~~~~~~ 378 (449)
.++.....
T Consensus 84 ~~~~~~~~ 91 (96)
T 1x5t_A 84 FKKDSKGS 91 (96)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98765443
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=140.91 Aligned_cols=88 Identities=25% Similarity=0.477 Sum_probs=82.1
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34459999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99876543
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-19 Score=141.03 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=79.9
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+ .|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34459999999999999999999999999999999999999899999999999999999999999998 89999999999
Q ss_pred CCCCCCC
Q 013087 370 AKPQADQ 376 (449)
Q Consensus 370 a~~~~~~ 376 (449)
+.+....
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9876543
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=142.04 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+++.++|||+|||+++|+++|+++|++||.|..|+|+.++.|++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=7.2e-20 Score=134.94 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=78.1
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999888999999999999999999999999999999999999999876
Q ss_pred C
Q 013087 374 A 374 (449)
Q Consensus 374 ~ 374 (449)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=141.00 Aligned_cols=87 Identities=25% Similarity=0.399 Sum_probs=81.5
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34589999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013087 371 KPQADQK 377 (449)
Q Consensus 371 ~~~~~~~ 377 (449)
++.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dnm_A 91 RYGRRDL 97 (103)
T ss_dssp SSCCSCC
T ss_pred CcCCCCC
Confidence 9766543
No 42
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.4e-20 Score=151.73 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=84.1
Q ss_pred eEEEEecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCccccccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEE
Q 013087 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323 (449)
Q Consensus 244 g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v 323 (449)
-+.|++|.+...+..|+..+++......+ ...+..+ .......++|||+|||+.+|+++|+++|++||.|..|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp ---------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 35677888888888888888764332211 1122222 2233445899999999999999999999999999999
Q ss_pred EecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCC
Q 013087 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 324 ~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~ 377 (449)
+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++++....
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999888999999999999999999999999999999999999999866544
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=147.51 Aligned_cols=88 Identities=26% Similarity=0.441 Sum_probs=82.2
Q ss_pred ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
.....++|||+|||..+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 013087 369 LAKPQADQ 376 (449)
Q Consensus 369 ~a~~~~~~ 376 (449)
|++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99977654
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=140.53 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=81.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 45899999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013087 372 PQADQKT 378 (449)
Q Consensus 372 ~~~~~~~ 378 (449)
++.....
T Consensus 91 ~~~~~~~ 97 (102)
T 2cqb_A 91 PMRIKES 97 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8766443
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=139.93 Aligned_cols=88 Identities=23% Similarity=0.418 Sum_probs=81.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCC-CCCCCcccEEEEEeCCHHHHHHHHHHc-CCceeCCeEeEE
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA-KPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDC 367 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~-~~~~~~kg~afV~F~~~~~A~~A~~~l-ng~~i~gr~l~v 367 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 344589999999999999999999999999999999999 788888999999999999999999999 999999999999
Q ss_pred EeCCCCCCCC
Q 013087 368 SLAKPQADQK 377 (449)
Q Consensus 368 ~~a~~~~~~~ 377 (449)
.|++++....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999876543
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=140.41 Aligned_cols=89 Identities=20% Similarity=0.378 Sum_probs=82.5
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC------CceeCCe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE------KYEIDGQ 363 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln------g~~i~gr 363 (449)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3445899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EeEEEeCCCCCCCCC
Q 013087 364 VLDCSLAKPQADQKT 378 (449)
Q Consensus 364 ~l~v~~a~~~~~~~~ 378 (449)
.|+|.|+.++.....
T Consensus 92 ~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 92 QLKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999998765443
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.5e-19 Score=137.16 Aligned_cols=83 Identities=18% Similarity=0.428 Sum_probs=79.5
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
+++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 48999999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=141.36 Aligned_cols=88 Identities=25% Similarity=0.446 Sum_probs=82.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 371 KPQADQKT 378 (449)
Q Consensus 371 ~~~~~~~~ 378 (449)
+++.....
T Consensus 90 ~~~~~~~~ 97 (102)
T 1x5s_A 90 GKSSDNRS 97 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 98766443
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=135.78 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=76.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 48999999999999999999999999999999999988888999999999999999999999999999999999999986
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.1e-19 Score=142.76 Aligned_cols=88 Identities=20% Similarity=0.402 Sum_probs=82.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34589999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 371 KPQADQKT 378 (449)
Q Consensus 371 ~~~~~~~~ 378 (449)
+++.....
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpz_A 103 RSKNDSKS 110 (115)
T ss_dssp CCSCCCCC
T ss_pred CCCCcCCC
Confidence 98766443
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=137.49 Aligned_cols=84 Identities=21% Similarity=0.440 Sum_probs=78.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCC-CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+.+|+++|+++|+.|| |..|+|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 458999999999999999999999999 999999999987 888999999999999999999 89999999999999999
Q ss_pred CCCCCCC
Q 013087 371 KPQADQK 377 (449)
Q Consensus 371 ~~~~~~~ 377 (449)
.++....
T Consensus 92 ~~~~~~~ 98 (104)
T 1wi8_A 92 DQAQDKD 98 (104)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=138.56 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=79.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCC---CCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~---~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
.++|||+|||+.+|+++|+++|++||.|..|+|+.++. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 48999999999999999999999999999999998876 557899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
++++....
T Consensus 85 a~~~~~~~ 92 (98)
T 2cpf_A 85 SERATKPA 92 (98)
T ss_dssp SSCSSCCC
T ss_pred ccCCCCCC
Confidence 99876544
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.1e-19 Score=134.52 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=76.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34899999999999999999999999999999999998888889999999999999999999999999999999999985
No 54
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=4.2e-20 Score=178.16 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=80.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986544
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=138.86 Aligned_cols=87 Identities=30% Similarity=0.466 Sum_probs=80.0
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 335689999999999999999999999999999999988 677799999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 013087 370 AKPQADQKT 378 (449)
Q Consensus 370 a~~~~~~~~ 378 (449)
++++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998776544
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=137.46 Aligned_cols=84 Identities=15% Similarity=0.381 Sum_probs=78.8
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 7777999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013087 371 KPQAD 375 (449)
Q Consensus 371 ~~~~~ 375 (449)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 97664
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=139.55 Aligned_cols=83 Identities=33% Similarity=0.536 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh-CCCcccCeeEEEeec
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAA 196 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~~ 196 (449)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.+ ++..|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999876 466799999999999
Q ss_pred ccccc
Q 013087 197 QAKHR 201 (449)
Q Consensus 197 ~~~~~ 201 (449)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=140.48 Aligned_cols=83 Identities=22% Similarity=0.427 Sum_probs=78.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4899999999999999999999999999999999998 777899999999999999999999999999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 86 ~~~~ 89 (116)
T 2fy1_A 86 PSFQ 89 (116)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 6643
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=135.40 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=77.5
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34589999999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred C
Q 013087 371 K 371 (449)
Q Consensus 371 ~ 371 (449)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=136.21 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=78.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34458999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCC
Q 013087 370 AKP 372 (449)
Q Consensus 370 a~~ 372 (449)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 61
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=137.27 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=79.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++|| |..|+|++++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3458999999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCC
Q 013087 371 KPQADQK 377 (449)
Q Consensus 371 ~~~~~~~ 377 (449)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9766543
No 62
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.1e-19 Score=152.50 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=80.9
Q ss_pred EecCCHHHHHHHHHHcCCCCcccCCCCCeeeeCCC----------------CCccccccccccEEEEcCCCcCCCHHHHH
Q 013087 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP----------------RNAESSAASQVKALYVKNLPKDITQDRLK 311 (449)
Q Consensus 248 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~ 311 (449)
..|....+|..++..+........++.....+... ...........++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45666666666666666554443333333322111 01111233446789999999999999999
Q ss_pred HHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCCCC
Q 013087 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378 (449)
Q Consensus 312 ~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~~~ 378 (449)
.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++.....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 9999999999999999998999999999999999999999999999999999999999987765443
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.2e-19 Score=142.33 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=74.8
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
.+|||+|||+++|+++|+++|++||.|.+|+|+++.. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 7899999999999999999999999999999998864 35899999999999999999999999999999999999876
Q ss_pred CCC
Q 013087 374 ADQ 376 (449)
Q Consensus 374 ~~~ 376 (449)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4e-20 Score=141.12 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred ccEEEEcCCCc------CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC-eEe
Q 013087 293 VKALYVKNLPK------DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVL 365 (449)
Q Consensus 293 ~~~l~V~nLp~------~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g-r~l 365 (449)
.++|||+|||+ .+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.| |.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 48999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeCCCCC
Q 013087 366 DCSLAKPQA 374 (449)
Q Consensus 366 ~v~~a~~~~ 374 (449)
+|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 65
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.79 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=71.7
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce--eCCeEeEEE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCS 368 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--i~gr~l~v~ 368 (449)
.++++|||+|||+.+|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|+..||+.. |.||+|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34589999999999999999999999999999999865 7999999999999999999999764 889999999
Q ss_pred eCCCCC
Q 013087 369 LAKPQA 374 (449)
Q Consensus 369 ~a~~~~ 374 (449)
|++++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 66
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=136.43 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=73.3
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~v~~ 369 (449)
..++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3489999999999999999999999999999999986 7999999999999999999886 4789999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
++++....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98776543
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.1e-19 Score=139.06 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=81.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCcee---CCeEeEE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQVLDC 367 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i---~gr~l~v 367 (449)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3458999999999999999999999999999999999999899999999999999999999999999887 8999999
Q ss_pred EeCCCCCCCC
Q 013087 368 SLAKPQADQK 377 (449)
Q Consensus 368 ~~a~~~~~~~ 377 (449)
.|+.++....
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9999876543
No 68
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=3.2e-19 Score=139.00 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=80.9
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34458999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 69
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8e-19 Score=134.99 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=78.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 344599999999999999999999999999999999988754 689999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99876544
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=135.35 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=78.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34589999999999999999999999999999999998654 4899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013087 371 KPQADQK 377 (449)
Q Consensus 371 ~~~~~~~ 377 (449)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9866543
No 71
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.7e-19 Score=137.45 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=80.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC---eEeEE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG---QVLDC 367 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g---r~l~v 367 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345999999999999999999999999999999999988 57779999999999999999999999999998 99999
Q ss_pred EeCCCCCCCCC
Q 013087 368 SLAKPQADQKT 378 (449)
Q Consensus 368 ~~a~~~~~~~~ 378 (449)
.|+.++..+..
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998776543
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=139.51 Aligned_cols=86 Identities=23% Similarity=0.330 Sum_probs=80.8
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEE--------EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--------~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g 362 (449)
...++|||+|||+.+|+++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3458999999999999999999999999999 69999998889999999999999999999999999999999
Q ss_pred eEeEEEeCCCCCCC
Q 013087 363 QVLDCSLAKPQADQ 376 (449)
Q Consensus 363 r~l~v~~a~~~~~~ 376 (449)
+.|+|.+++++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999987654
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.5e-19 Score=143.36 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=81.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34589999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876654
No 74
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-20 Score=137.62 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCC--EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC----cccCeeEE
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGE--VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC----ELKGKKIK 192 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~----~i~g~~l~ 192 (449)
=.||||+|||+++|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .|.|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred Eeeccc
Q 013087 193 CSAAQA 198 (449)
Q Consensus 193 v~~~~~ 198 (449)
|.+|++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 75
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=138.63 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=80.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=134.05 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=76.0
Q ss_pred cccEEEEcCCCcCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 292 QVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
..++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34899999999999999999 99999999999999999876 789999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.+++++..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987654
No 77
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.4e-19 Score=128.74 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=69.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+.-|||+||++.+|+++|+++|.+||+|.++++... ||||||+|.+.++|.+|++.||+..|.||.|+|.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 378999999999999999999999999999999763 8999999999999999999999999999999999995
No 78
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=138.05 Aligned_cols=87 Identities=25% Similarity=0.437 Sum_probs=81.0
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34458999999999999999999999999999999999998899999999999999999999998 99999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99876543
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=138.22 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=79.3
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhc-CCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce-eCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAH-HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~-~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~-i~gr~l~v~~ 369 (449)
..++|||+|||+.+|+++|+++|++ ||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+.. |.|+.|+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3489999999999999999999999 9999999999998 77889999999999999999999999999 9999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
+.++....
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98766543
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=3.2e-19 Score=140.20 Aligned_cols=106 Identities=15% Similarity=0.291 Sum_probs=96.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+..+++|||+|||+++|+++|+.+|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3557899999999999999999999999999999999976 5579999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCC
Q 013087 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225 (449)
Q Consensus 195 ~~~~~~~~~v~~lp~~~~~~~l~~~f~~~g~ 225 (449)
++.+.... .+++....+++|.++|.++|.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 99876543 677777888999999999995
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=135.25 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred cccEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC--ceeCCeEeEEE
Q 013087 292 QVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCS 368 (449)
Q Consensus 292 ~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~i~gr~l~v~ 368 (449)
+.++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..||+ ..|.||+|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 458999999999 9999999999999999999999976 68999999999999999999885 45999999999
Q ss_pred eCCCCCCC
Q 013087 369 LAKPQADQ 376 (449)
Q Consensus 369 ~a~~~~~~ 376 (449)
||+.....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x4d_A 88 LSQKYKRI 95 (102)
T ss_dssp EECCCTTS
T ss_pred ECCCCCCC
Confidence 99865543
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=138.21 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=80.1
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 33458999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013087 370 AKPQA 374 (449)
Q Consensus 370 a~~~~ 374 (449)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 83
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=4.1e-20 Score=138.30 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=72.8
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
.+|||+|||+.+|+++|+++|++|| .|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 84
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=3.8e-19 Score=149.12 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.++
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8754
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=135.11 Aligned_cols=84 Identities=23% Similarity=0.442 Sum_probs=75.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|.|..+. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3345899999999999999999999999999999997653 3589999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013087 370 AKPQADQ 376 (449)
Q Consensus 370 a~~~~~~ 376 (449)
++++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876543
No 86
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=133.06 Aligned_cols=83 Identities=25% Similarity=0.423 Sum_probs=77.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCC-cccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~-~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 38999999999999999999999999999999999887655 79999999999999999999999999999999999998
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
++..
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=140.00 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=80.9
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34458999999999999999999999999999999999999899999999999999999999997 99999999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99876543
No 88
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=133.04 Aligned_cols=85 Identities=31% Similarity=0.625 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+..+++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97654
No 89
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=131.60 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=73.5
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc--CCceeCCeEeEEE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDCS 368 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l--ng~~i~gr~l~v~ 368 (449)
.+.++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34589999999999999999999999999999999876 799999999999999999977 4678999999999
Q ss_pred eCCCCCCCC
Q 013087 369 LAKPQADQK 377 (449)
Q Consensus 369 ~a~~~~~~~ 377 (449)
|++++....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999766543
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=135.90 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=77.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 358999999999999999999999999999999999875 7779999999999999999999999999999999999998
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
.....
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65443
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=6.1e-19 Score=131.83 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=77.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 389999999999999999999999999999999999988889999999999999999999 8999999999999999986
Q ss_pred CC
Q 013087 373 QA 374 (449)
Q Consensus 373 ~~ 374 (449)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=7.8e-19 Score=129.34 Aligned_cols=81 Identities=21% Similarity=0.449 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
+++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred c
Q 013087 199 K 199 (449)
Q Consensus 199 ~ 199 (449)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=136.04 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=79.5
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEE-EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE----eE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV----LD 366 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~-~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~----l~ 366 (449)
..++|||+|||+.+++++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 458999999999999999999999999999 9999999989999999999999999999999999999999999 99
Q ss_pred EEeCCCCCC
Q 013087 367 CSLAKPQAD 375 (449)
Q Consensus 367 v~~a~~~~~ 375 (449)
|.|+++...
T Consensus 88 v~~a~~~~~ 96 (99)
T 2div_A 88 LNYATYSGP 96 (99)
T ss_dssp EEETTCCSS
T ss_pred EeecCCCCC
Confidence 999987654
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=130.80 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||.++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=135.39 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=77.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEE--------EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
....++|||+|||+.+|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 334589999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEeEEEeCC
Q 013087 362 GQVLDCSLAK 371 (449)
Q Consensus 362 gr~l~v~~a~ 371 (449)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=133.26 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=72.9
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC--ceeCCeEeEEE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCS 368 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~i~gr~l~v~ 368 (449)
.+.++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999875 79999999999999999998875 45999999999
Q ss_pred eCCCCCCCC
Q 013087 369 LAKPQADQK 377 (449)
Q Consensus 369 ~a~~~~~~~ 377 (449)
|++.+....
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 999766543
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.2e-19 Score=141.79 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=80.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
+.++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 98
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1e-18 Score=132.42 Aligned_cols=85 Identities=31% Similarity=0.638 Sum_probs=80.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
++++|||+|||.++++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred ccccc
Q 013087 198 AKHRL 202 (449)
Q Consensus 198 ~~~~~ 202 (449)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=135.70 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=74.5
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+++|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+|+. +|+..|.|+.|+|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 48999999999999999999999999999999999988 7789999999999999999999 899999999999999765
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=6.8e-19 Score=132.40 Aligned_cols=83 Identities=22% Similarity=0.351 Sum_probs=76.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||..+|+++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4589999999999999999999999999999999873 66779999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76653
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=7.6e-19 Score=130.05 Aligned_cols=82 Identities=28% Similarity=0.532 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 102
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=133.13 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccccc
Q 013087 196 AQAKHR 201 (449)
Q Consensus 196 ~~~~~~ 201 (449)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=140.40 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=79.8
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999998889999999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876554
No 104
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=132.75 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=75.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 458999999999999999999999999999999999887 6779999999999999999999999999999999999987
Q ss_pred C
Q 013087 372 P 372 (449)
Q Consensus 372 ~ 372 (449)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=9.1e-19 Score=138.29 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=77.4
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34468999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CC
Q 013087 370 AK 371 (449)
Q Consensus 370 a~ 371 (449)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-18 Score=132.09 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=73.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC-----eEeE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVLD 366 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g-----r~l~ 366 (449)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3589999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEeCCCCCCCC
Q 013087 367 CSLAKPQADQK 377 (449)
Q Consensus 367 v~~a~~~~~~~ 377 (449)
|.++.++....
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99999866543
No 107
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=142.76 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEE--EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCc----eeCCeE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITK--VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDGQV 364 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~----~i~gr~ 364 (449)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.++.+||||||+|.+. +|.+|+..|||. .|.||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44589999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEEeCCCCCCC
Q 013087 365 LDCSLAKPQADQ 376 (449)
Q Consensus 365 l~v~~a~~~~~~ 376 (449)
|+|.|++++...
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999886543
No 108
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=134.61 Aligned_cols=85 Identities=24% Similarity=0.444 Sum_probs=77.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..+ +..|.|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34589999999999999999999999999999999999998999999999999999999999976 58999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 976543
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=131.69 Aligned_cols=83 Identities=36% Similarity=0.577 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.++..++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 013087 195 AAQ 197 (449)
Q Consensus 195 ~~~ 197 (449)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 110
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=131.99 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=78.5
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||. +++.|.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 345899999999999999999999999999999999999989999999999999999999999 577999999999999
Q ss_pred CCCCCCC
Q 013087 371 KPQADQK 377 (449)
Q Consensus 371 ~~~~~~~ 377 (449)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9876543
No 111
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=2.9e-18 Score=131.72 Aligned_cols=80 Identities=31% Similarity=0.655 Sum_probs=73.5
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345899999999999999999999999999999997 469999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013087 371 KPQADQKT 378 (449)
Q Consensus 371 ~~~~~~~~ 378 (449)
+++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 98766443
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=135.67 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=77.2
Q ss_pred cccEEEEcCCCcCCCHHHHH---HHHhcCCcEEEEEecCCCCCC---CcccEEEEEeCCHHHHHHHHHHcCCceeCCeEe
Q 013087 292 QVKALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~---~~F~~~G~v~~v~i~~~~~~~---~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l 365 (449)
..++|||+|||+.+++++|+ ++|++||.|..|+|+++..++ .++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35899999999999999999 999999999999999887643 456999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 013087 366 DCSLAKPQAD 375 (449)
Q Consensus 366 ~v~~a~~~~~ 375 (449)
+|.||.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999998763
No 113
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=131.97 Aligned_cols=84 Identities=27% Similarity=0.450 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 013087 195 AAQA 198 (449)
Q Consensus 195 ~~~~ 198 (449)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8863
No 114
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.91 Aligned_cols=84 Identities=27% Similarity=0.648 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 97654
No 115
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.2e-19 Score=133.40 Aligned_cols=80 Identities=21% Similarity=0.475 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
.+|||+|||+++|+++|+++|++|| .|..|+++.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 013087 198 AK 199 (449)
Q Consensus 198 ~~ 199 (449)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.6e-18 Score=128.84 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=74.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. +++..|.|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999999989999999999999999999997 5888999999999986
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.6e-19 Score=135.80 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=73.5
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~v~~ 369 (449)
+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4589999999999999999999999999999999986 7999999999999999999887 4689999999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
++++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98776654
No 118
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=132.43 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=79.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--------VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 114 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
..+...++|||+|||+++|+++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCeeEEEeecc
Q 013087 186 LKGKKIKCSAAQ 197 (449)
Q Consensus 186 i~g~~l~v~~~~ 197 (449)
|.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998873
No 119
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=144.79 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=77.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCC--cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
.++|||+|||+.+|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 48999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 013087 371 KPQ 373 (449)
Q Consensus 371 ~~~ 373 (449)
.++
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 864
No 120
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=128.86 Aligned_cols=78 Identities=27% Similarity=0.599 Sum_probs=72.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||..+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45899999999999999999999999999999997 5799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 372 PQADQK 377 (449)
Q Consensus 372 ~~~~~~ 377 (449)
++....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.2e-19 Score=136.99 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC-ee
Q 013087 118 HGSEVYLGGIPH------DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-KK 190 (449)
Q Consensus 118 ~~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g-~~ 190 (449)
.+++|||+|||+ ++++++|+++|++||.|..|+|+.++.||+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeccccc
Q 013087 191 IKCSAAQAKH 200 (449)
Q Consensus 191 l~v~~~~~~~ 200 (449)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987643
No 122
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=133.73 Aligned_cols=87 Identities=29% Similarity=0.473 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccccc
Q 013087 195 AAQAKHR 201 (449)
Q Consensus 195 ~~~~~~~ 201 (449)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9976543
No 123
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=135.02 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=78.0
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34589999999999999999999999999998888888888888999999999999999999999999999999999998
Q ss_pred CCCC
Q 013087 371 KPQA 374 (449)
Q Consensus 371 ~~~~ 374 (449)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8543
No 124
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=135.12 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=75.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCC-CCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK-PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~-~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
...++|||+|||+.+|+++|+++|+.|| |..|+|+.++ .++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3459999999999999999999999999 9999999998 58888999999999999999999 8999999999999999
Q ss_pred CCCCC
Q 013087 370 AKPQA 374 (449)
Q Consensus 370 a~~~~ 374 (449)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98754
No 125
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.6e-18 Score=134.34 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=76.1
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445899999999999999999999999999999999998 7778999999999999999999999999999999999998
Q ss_pred C
Q 013087 371 K 371 (449)
Q Consensus 371 ~ 371 (449)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 126
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=134.84 Aligned_cols=85 Identities=28% Similarity=0.582 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 127
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=133.94 Aligned_cols=85 Identities=20% Similarity=0.446 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 128
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=132.57 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV-RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...++|||+|||+++|+++|+.+|++||.|..| +|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87653
No 129
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.7e-18 Score=135.96 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=79.8
Q ss_pred ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
.....++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998 77789999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 013087 369 LAKPQAD 375 (449)
Q Consensus 369 ~a~~~~~ 375 (449)
||.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987554
No 130
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=131.35 Aligned_cols=84 Identities=24% Similarity=0.572 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87653
No 131
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=133.25 Aligned_cols=85 Identities=22% Similarity=0.545 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87654
No 132
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=133.93 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 87543
No 133
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=133.05 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=78.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEec-CCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeEEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIP-PAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCS 368 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~-~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~v~ 368 (449)
.++|||+|||+.+|+++|+++|+.||. |..|.|+ .+..++.++|||||+|.+.++|.+|+..|| +..|.|+.|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 489999999999999999999999998 9999998 788888889999999999999999999996 589999999999
Q ss_pred eCCCCCCC
Q 013087 369 LAKPQADQ 376 (449)
Q Consensus 369 ~a~~~~~~ 376 (449)
|++++...
T Consensus 88 ~a~~~~~~ 95 (109)
T 2dis_A 88 WAEPEIDV 95 (109)
T ss_dssp ESCSSCST
T ss_pred EcCCCCCc
Confidence 99987653
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=2.7e-18 Score=134.92 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.++.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997654
No 135
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.8e-18 Score=137.82 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=78.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999888899999999999999999999 799999999999999998
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
+....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65543
No 136
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=130.42 Aligned_cols=82 Identities=28% Similarity=0.479 Sum_probs=73.6
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.| +|+.+ .++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 345999999999999999999999999987 56666 55667999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 137
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.7e-18 Score=127.58 Aligned_cols=81 Identities=22% Similarity=0.533 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 68889999999998
Q ss_pred ec
Q 013087 195 AA 196 (449)
Q Consensus 195 ~~ 196 (449)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 138
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=133.14 Aligned_cols=83 Identities=24% Similarity=0.454 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..+++|||+|||+++|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=6.5e-19 Score=155.22 Aligned_cols=82 Identities=21% Similarity=0.472 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=127.84 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=72.3
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999999999998 3499999999999999999999999999999999998
Q ss_pred CCCCCC
Q 013087 372 PQADQK 377 (449)
Q Consensus 372 ~~~~~~ 377 (449)
++....
T Consensus 81 ~~~~~~ 86 (92)
T 2dgt_A 81 SRLRTA 86 (92)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 776543
No 141
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=5.4e-19 Score=127.38 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=72.2
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
+|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999888899999999999999999998 9999999999999986
No 142
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=1.8e-18 Score=135.89 Aligned_cols=85 Identities=22% Similarity=0.473 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 143
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-19 Score=133.96 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=73.9
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.| .|+|+.++ ++.++|||||+|.+.++|.+||. +|+..|.||.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 34899999999999999999999999954 99999998 77889999999999999999995 79999999999999988
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 144
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=133.82 Aligned_cols=86 Identities=23% Similarity=0.458 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC------CCcccC
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN------SCELKG 188 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~------g~~i~g 188 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEeeccccc
Q 013087 189 KKIKCSAAQAKH 200 (449)
Q Consensus 189 ~~l~v~~~~~~~ 200 (449)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999987653
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=131.19 Aligned_cols=85 Identities=31% Similarity=0.452 Sum_probs=76.2
Q ss_pred ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
.....++|||+|||+.+|+++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344569999999999999999999999884 67777787788889999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 013087 369 LAKPQADQ 376 (449)
Q Consensus 369 ~a~~~~~~ 376 (449)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987653
No 146
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=131.84 Aligned_cols=84 Identities=18% Similarity=0.413 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCC---CCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD---SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++. |+.++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eeccccc
Q 013087 194 SAAQAKH 200 (449)
Q Consensus 194 ~~~~~~~ 200 (449)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987654
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=131.31 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=75.5
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEE-EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+.+|+++|+++|++||.|.. |+|+.+ .++.++|||||+|.+.++|.+||.. |+..|+||.|+|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 4589999999999999999999999999997 889888 6777899999999999999999997 999999999999998
Q ss_pred CCCCC
Q 013087 371 KPQAD 375 (449)
Q Consensus 371 ~~~~~ 375 (449)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 86554
No 148
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=132.68 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=74.7
Q ss_pred ccEEEEcCCCcCC------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe-Ee
Q 013087 293 VKALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VL 365 (449)
Q Consensus 293 ~~~l~V~nLp~~~------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr-~l 365 (449)
.++|||+|||+.+ |+++|+++|++||.|..|+|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 5899999999999 889999999999999999998 45677899999999999999999999999999998 99
Q ss_pred EEEeCCCCCC
Q 013087 366 DCSLAKPQAD 375 (449)
Q Consensus 366 ~v~~a~~~~~ 375 (449)
+|.++....+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999986543
No 149
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-19 Score=131.98 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=76.1
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34899999999999999999999999999999999999989999999999999999999999999999999999988765
No 150
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=133.69 Aligned_cols=85 Identities=27% Similarity=0.511 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 151
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-19 Score=135.62 Aligned_cols=84 Identities=21% Similarity=0.513 Sum_probs=79.9
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 48999999999999999999999999999999999988888999999999999999999999999999999999999998
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 7654
No 152
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2e-18 Score=137.89 Aligned_cols=86 Identities=28% Similarity=0.437 Sum_probs=81.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 114 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
..+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 013087 194 SAAQAK 199 (449)
Q Consensus 194 ~~~~~~ 199 (449)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=132.23 Aligned_cols=80 Identities=24% Similarity=0.493 Sum_probs=75.0
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||..+|+++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4589999999999999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 372 PQADQK 377 (449)
Q Consensus 372 ~~~~~~ 377 (449)
++....
T Consensus 98 ~~~~~~ 103 (109)
T 1x4g_A 98 ESPDMT 103 (109)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 154
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=134.34 Aligned_cols=84 Identities=26% Similarity=0.403 Sum_probs=76.8
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
......++|||+|||..+|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3344569999999999999999999999999999999998864 36899999999999999999999999999999999
Q ss_pred EeCCCC
Q 013087 368 SLAKPQ 373 (449)
Q Consensus 368 ~~a~~~ 373 (449)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999875
No 155
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=130.42 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=74.8
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+|+++|+++|++||.|..|+|.++ +|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 344589999999999999999999999999999999876 79999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013087 370 AKPQADQ 376 (449)
Q Consensus 370 a~~~~~~ 376 (449)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9986653
No 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-19 Score=138.42 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=77.1
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcE-EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v-~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
...++|||+|||+.+|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345899999999999999999999999999 889999998 777899999999999999999996 99999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
+.++..
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987653
No 157
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=5.5e-19 Score=133.80 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=75.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 48999999999999999999999999999898888888888899999999999999999999999999999999999874
No 158
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=127.31 Aligned_cols=79 Identities=33% Similarity=0.560 Sum_probs=72.6
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcC--CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
....++|||+|||+.+|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3445899999999999999999999999 999999885 679999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 013087 368 SLAKPQADQ 376 (449)
Q Consensus 368 ~~a~~~~~~ 376 (449)
.|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999976653
No 159
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=128.90 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=73.2
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC--CeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID--GQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~--gr~l~v~~ 369 (449)
+.++|||+|||..+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..|. |+.|+|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4589999999999999999999999999999999875 789999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
++++..
T Consensus 90 a~~~~~ 95 (97)
T 1why_A 90 AKSGPS 95 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 997654
No 160
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=131.90 Aligned_cols=86 Identities=28% Similarity=0.500 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecC-CCCCCcccEEEEEecCHHHHHHHHHHh-CCCcccCeeEEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKC 193 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~tg~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v 193 (449)
....++|||+|||+++|+++|+.+|++||.|..|+|+.+ +.++.++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346789999999999999999999999999999999998 778999999999999999999999999 999999999999
Q ss_pred eecccccc
Q 013087 194 SAAQAKHR 201 (449)
Q Consensus 194 ~~~~~~~~ 201 (449)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987644
No 161
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=131.44 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..|+|+.++. |.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999988 9999999999999999999998 9999999999999977
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 162
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=133.19 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=73.1
Q ss_pred cccccEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC--CceeCCeEeE
Q 013087 290 ASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLD 366 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~i~gr~l~ 366 (449)
..+.++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|| +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 334689999999998 999999999999999999999864 7999999999999999999886 4569999999
Q ss_pred EEeCCCCCCCC
Q 013087 367 CSLAKPQADQK 377 (449)
Q Consensus 367 v~~a~~~~~~~ 377 (449)
|.|++.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766544
No 163
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=128.22 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=75.2
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|+.| .|..|+|+++ .++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 34899999999999999999999999 9999999999 667779999999999999999999 99999999999999998
Q ss_pred CCC
Q 013087 372 PQA 374 (449)
Q Consensus 372 ~~~ 374 (449)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 164
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=129.32 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC--CcccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~ 192 (449)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4667899999999999999999999999999999999875 68999999999999999998864 789999999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++..+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99997653
No 165
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3e-18 Score=132.55 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc---cCeeEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---KGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i---~g~~l~ 192 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 166
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=141.11 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
..++|||+|||+++|+++|+++|+.|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 167
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.5e-18 Score=132.47 Aligned_cols=83 Identities=27% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 754
No 168
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=126.40 Aligned_cols=76 Identities=21% Similarity=0.436 Sum_probs=71.3
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 458999999999999999999999999999999983 499999999999999999999999999999999998
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
++..
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 169
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=6.6e-18 Score=130.36 Aligned_cols=83 Identities=22% Similarity=0.445 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC---eeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG---KKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g---~~l~v 193 (449)
...++|||+|||+++|+++|+.+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|++.||+..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 59999999999999999999999999999998 99999
Q ss_pred eeccccc
Q 013087 194 SAAQAKH 200 (449)
Q Consensus 194 ~~~~~~~ 200 (449)
.++.+..
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9997653
No 170
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.5e-18 Score=132.55 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=70.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCC-cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..+|||+|||+++|+++|+++|++|| .|..|.|... .++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 38999999999999999999999999 8999999643 248999999999999999999999999999999999997
Q ss_pred CCC
Q 013087 372 PQA 374 (449)
Q Consensus 372 ~~~ 374 (449)
.+.
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=130.76 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCee----
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT-EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK---- 190 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~---- 190 (449)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34679999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEeecccc
Q 013087 191 IKCSAAQAK 199 (449)
Q Consensus 191 l~v~~~~~~ 199 (449)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988754
No 172
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=4.5e-18 Score=127.06 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999988999999999999999999999 8999999999999999875
Q ss_pred c
Q 013087 199 K 199 (449)
Q Consensus 199 ~ 199 (449)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 173
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=133.08 Aligned_cols=84 Identities=26% Similarity=0.549 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.7e-19 Score=129.42 Aligned_cols=82 Identities=24% Similarity=0.520 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++++++|+.+|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35688999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.9e-18 Score=121.89 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 68999999999999999999999999999999998873
No 176
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=128.46 Aligned_cols=81 Identities=28% Similarity=0.468 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999987 99999999999999999999999999999999999998
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 177
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=130.22 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=73.4
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4899999999999999999999999999999999999987
Q ss_pred CCC
Q 013087 374 ADQ 376 (449)
Q Consensus 374 ~~~ 376 (449)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 178
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=130.38 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 97654
No 179
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.1e-18 Score=135.21 Aligned_cols=82 Identities=23% Similarity=0.469 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999988
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 180
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=137.30 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=77.0
Q ss_pred ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eC
Q 013087 369 LA 370 (449)
Q Consensus 369 ~a 370 (449)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 181
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=126.74 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=73.2
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
++|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999888999999999999999999999999 9999999999987
No 182
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=134.71 Aligned_cols=82 Identities=18% Similarity=0.391 Sum_probs=73.7
Q ss_pred cccEEEEcCCCcCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 292 QVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 35899999999999999876 6999999999998864 3566999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 013087 368 SLAKPQADQ 376 (449)
Q Consensus 368 ~~a~~~~~~ 376 (449)
.|++.+...
T Consensus 105 ~~a~~~~~~ 113 (127)
T 2a3j_A 105 TFSETPQSQ 113 (127)
T ss_dssp EECCCCCHH
T ss_pred EEccCcchh
Confidence 999976543
No 183
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.9e-19 Score=132.55 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=74.3
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++|||+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999998999999999999999 99999999999999999999999876
Q ss_pred CC
Q 013087 374 AD 375 (449)
Q Consensus 374 ~~ 375 (449)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 184
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=131.43 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=74.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
..+|||+|||+++|+++|+++|+.| .|..|+|+.++. ++++|||||+|.+.++|.+|| .+|+..|+||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 899999999987 677999999999999999999 5899999999999999976
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
+..
T Consensus 93 ~~~ 95 (109)
T 2dnn_A 93 RQW 95 (109)
T ss_dssp HHH
T ss_pred cch
Confidence 543
No 185
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=127.12 Aligned_cols=82 Identities=20% Similarity=0.443 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCC-cccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGE-AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~-~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..++|||+|||+++|+++|+++|++||.|..|.++.++.++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999887666 8999999999999999999999999999999999988
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 186
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9e-20 Score=143.52 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=79.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEE--------EEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr 363 (449)
..++|||+|||+.+|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3489999999999999999999999999998 99999988888899999999999999999999999999999
Q ss_pred EeEEEeCCCCCCC
Q 013087 364 VLDCSLAKPQADQ 376 (449)
Q Consensus 364 ~l~v~~a~~~~~~ 376 (449)
.|+|.+++++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999976653
No 187
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.4e-18 Score=129.86 Aligned_cols=83 Identities=19% Similarity=0.480 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++|| |..|+|+.++.+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 7999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87653
No 188
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=9.3e-18 Score=130.01 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecc
Q 013087 195 AAQ 197 (449)
Q Consensus 195 ~~~ 197 (449)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 189
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=130.90 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-ccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKS-IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~-i~g~~l~ 192 (449)
.+...++|||+|||+++|+++|+.+|++ ||.|..|+|+.++ ++.++|||||+|.+.++|.+|++.|++.. |.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456799999999999999999999999 9999999999998 79999999999999999999999999999 9999999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987543
No 190
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=132.97 Aligned_cols=85 Identities=31% Similarity=0.484 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT--------EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~ 187 (449)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeeEEEeeccccc
Q 013087 188 GKKIKCSAAQAKH 200 (449)
Q Consensus 188 g~~l~v~~~~~~~ 200 (449)
|+.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999987654
No 191
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.97 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc--ccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE--LKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~--i~g~~l~ 192 (449)
..+++++|||+|||+++|+++|+.+|++||.|.+|++++ .+|||||+|.+.++|.+|++.|++.. |.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345789999999999999999999999999999999975 46899999999999999999999886 7899999
Q ss_pred Eeecccc
Q 013087 193 CSAAQAK 199 (449)
Q Consensus 193 v~~~~~~ 199 (449)
|.+++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=124.42 Aligned_cols=75 Identities=25% Similarity=0.487 Sum_probs=70.6
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc-CCceeCCeEeEEEe
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDCSL 369 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l-ng~~i~gr~l~v~~ 369 (449)
...++|||+|||..+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| |+..|.|+.|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34589999999999999999999999999999999975 799999999999999999999 99999999999999
Q ss_pred CC
Q 013087 370 AK 371 (449)
Q Consensus 370 a~ 371 (449)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=125.99 Aligned_cols=73 Identities=26% Similarity=0.500 Sum_probs=67.9
Q ss_pred cEEEEcCCCcCC------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe-EeE
Q 013087 294 KALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLD 366 (449)
Q Consensus 294 ~~l~V~nLp~~~------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr-~l~ 366 (449)
++|||+|||+.+ |+++|+++|++||.|..|+|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 789999999999 789999999999999999988 45677899999999999999999999999999999 888
Q ss_pred EE
Q 013087 367 CS 368 (449)
Q Consensus 367 v~ 368 (449)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 194
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.1e-17 Score=130.19 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=71.4
Q ss_pred cccEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999999 3799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
+++...
T Consensus 98 ~~~~~~ 103 (110)
T 1wf1_A 98 GEPKPD 103 (110)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 865543
No 195
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=132.01 Aligned_cols=83 Identities=24% Similarity=0.566 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..+++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8653
No 196
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=129.87 Aligned_cols=82 Identities=21% Similarity=0.485 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCC-CCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~t-g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...++|||+|||+++|+++|+.+|+.|| |..|+|+.++.+ ++++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999987 999999999999999999999 8999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 197
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-18 Score=131.91 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=76.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCcee--------CC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--------DG 362 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i--------~g 362 (449)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345899999999999999999999999999999999998 778899999999999999999999999999 67
Q ss_pred eEeEEEeCCCC
Q 013087 363 QVLDCSLAKPQ 373 (449)
Q Consensus 363 r~l~v~~a~~~ 373 (449)
++|+|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 198
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.4e-17 Score=126.01 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=71.5
Q ss_pred ccccccEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 289 AASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
.....++|||+|||. .+++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334469999999998 99999999999999999999993 789999999999999999999999999999999
Q ss_pred EeCCCCC
Q 013087 368 SLAKPQA 374 (449)
Q Consensus 368 ~~a~~~~ 374 (449)
.|++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9998654
No 199
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.7e-18 Score=130.45 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=72.7
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
......++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 444556999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.|++++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 200
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=130.18 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
+..++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999998888999999999999999999999999999999999999887
Q ss_pred c
Q 013087 197 Q 197 (449)
Q Consensus 197 ~ 197 (449)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 201
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=7.9e-18 Score=130.44 Aligned_cols=84 Identities=24% Similarity=0.504 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|+.||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..+ +..|.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999999965 699999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.++
T Consensus 100 ~a~~~ 104 (109)
T 2rs2_A 100 VAFPR 104 (109)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98754
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.1e-18 Score=123.36 Aligned_cols=75 Identities=24% Similarity=0.656 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
+|||+|||+++|+++|+.+|++||.|..|+++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999889999999999999999999998 9999999999999865
No 203
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=131.15 Aligned_cols=84 Identities=21% Similarity=0.509 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 204
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=126.84 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999864 3899999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 87653
No 205
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.2e-17 Score=125.63 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999984 5899999999999999999999999999999999999998
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7643
No 206
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1e-17 Score=133.88 Aligned_cols=85 Identities=24% Similarity=0.439 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87543
No 207
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=130.74 Aligned_cols=82 Identities=27% Similarity=0.616 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999876
Q ss_pred cc
Q 013087 199 KH 200 (449)
Q Consensus 199 ~~ 200 (449)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 208
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.6e-17 Score=138.05 Aligned_cols=85 Identities=16% Similarity=0.331 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.....++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99754
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=127.06 Aligned_cols=83 Identities=19% Similarity=0.379 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|+|+.++. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 87643
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=130.30 Aligned_cols=82 Identities=20% Similarity=0.481 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCC-CCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK-DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+...++|||+|||+++|+++|+.+|+.|| |..|+|+.++ .+|+++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 58999999999999999999999 799999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 211
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=136.31 Aligned_cols=86 Identities=27% Similarity=0.484 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.+..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987653
No 212
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=126.22 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
...++|||+|||+++++++|+ .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357899999999999999999 99999999999999998764 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 213
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=124.01 Aligned_cols=76 Identities=25% Similarity=0.522 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999889999999999999999999999888 9999999999876
No 214
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=129.71 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999989888888999999999999999999999999999999999999988
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 215
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=130.89 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 489999999999999999999999999999999863 78999999999999999999999999999999999976
Q ss_pred CC
Q 013087 373 QA 374 (449)
Q Consensus 373 ~~ 374 (449)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 216
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.5e-18 Score=139.52 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=74.4
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+++|+++|+++|++|| |+.|+|++++. +.++|||||+|.+.++|.+|| .+|+..|.||.|+|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 348999999999999999999999999 67999999987 777999999999999999999 689999999999999988
Q ss_pred CCCC
Q 013087 372 PQAD 375 (449)
Q Consensus 372 ~~~~ 375 (449)
++..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 217
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5e-18 Score=128.56 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=71.4
Q ss_pred cccEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 458999999998 99999999999999999999994 689999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 371 KPQADQ 376 (449)
Q Consensus 371 ~~~~~~ 376 (449)
+++...
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876553
No 218
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=2e-17 Score=131.66 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+..+++|||+|||+++++++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecccccc
Q 013087 195 AAQAKHR 201 (449)
Q Consensus 195 ~~~~~~~ 201 (449)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9876543
No 219
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=131.75 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=74.3
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcE----EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v----~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
...++|||+|||+.+|+++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345899999999999999999999999998 455554 566799999999999999999999999999999999
Q ss_pred EEeCCCCCCCCC
Q 013087 367 CSLAKPQADQKT 378 (449)
Q Consensus 367 v~~a~~~~~~~~ 378 (449)
|.|++++.....
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998766443
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=128.51 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999886 689999999999999999999999999999999999864
No 221
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-18 Score=133.31 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999888 677777777889999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76654
No 222
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-18 Score=132.28 Aligned_cols=81 Identities=30% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+.+|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred cc
Q 013087 199 KH 200 (449)
Q Consensus 199 ~~ 200 (449)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 223
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.9e-18 Score=129.22 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=71.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||..+|+++|+++|++||.|..|+|.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 489999999999999999999999999999999843 89999999999999999999999999999999999986
Q ss_pred C
Q 013087 373 Q 373 (449)
Q Consensus 373 ~ 373 (449)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 224
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=2.4e-18 Score=137.84 Aligned_cols=81 Identities=11% Similarity=0.170 Sum_probs=75.8
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
..++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3489999999999999999999999999 88999999988 7779999999999999999999 99999999999999
Q ss_pred eCCCCC
Q 013087 369 LAKPQA 374 (449)
Q Consensus 369 ~a~~~~ 374 (449)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 225
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.6e-18 Score=123.77 Aligned_cols=75 Identities=17% Similarity=0.420 Sum_probs=71.8
Q ss_pred EEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 295 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
+|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999899999999999999999999995 899999999999886
No 226
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=127.77 Aligned_cols=82 Identities=16% Similarity=0.378 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999665 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87653
No 227
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=3.4e-18 Score=134.51 Aligned_cols=81 Identities=11% Similarity=0.184 Sum_probs=75.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
..++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3589999999999999999999999999 89999999887 7779999999999999999999 99999999999999
Q ss_pred eCCCCC
Q 013087 369 LAKPQA 374 (449)
Q Consensus 369 ~a~~~~ 374 (449)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 228
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=127.63 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE-VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+...++|||+|||+++|+++|+++|+.||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999998 888888 6799999999999999999999995 9999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 229
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=128.62 Aligned_cols=81 Identities=25% Similarity=0.339 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4578999999999999999999999999999999999985 999999999999999999999999999999999999988
Q ss_pred cc
Q 013087 197 QA 198 (449)
Q Consensus 197 ~~ 198 (449)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 230
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=123.97 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|+.| .|..|+|+.+ .+|+++|||||+|.+.++|.+|+. ||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 669999999999999999999999 999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 231
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=126.39 Aligned_cols=78 Identities=23% Similarity=0.505 Sum_probs=69.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCC-ceeCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK-YEIDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng-~~i~gr~l~v~~ 369 (449)
..++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|+.|+|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3489999999999999999999999999 5555552 379999999999999999999999 999999999999
Q ss_pred CCCCCCC
Q 013087 370 AKPQADQ 376 (449)
Q Consensus 370 a~~~~~~ 376 (449)
++++..+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9976543
No 232
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=126.68 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=71.1
Q ss_pred cccEEEE--cCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCcee-----CCeE
Q 013087 292 QVKALYV--KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-----DGQV 364 (449)
Q Consensus 292 ~~~~l~V--~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i-----~gr~ 364 (449)
++++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3588999 779999999999999999999999999764 79999999999999999999999998 7899
Q ss_pred eEEEeCCCCCC
Q 013087 365 LDCSLAKPQAD 375 (449)
Q Consensus 365 l~v~~a~~~~~ 375 (449)
|.|.|+.....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999986544
No 233
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.2e-18 Score=128.41 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|+.||.| .|+|+.++ +++++|||||+|.+.++|.+||+ +|+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45567899999999999999999999999955 99999998 79999999999999999999995 89999999999998
Q ss_pred eccc
Q 013087 195 AAQA 198 (449)
Q Consensus 195 ~~~~ 198 (449)
.+..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 234
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.9e-18 Score=127.21 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=71.4
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3358999999999999999999999999986 566543 44899999999999999999999999999999999999
Q ss_pred CCCCC
Q 013087 371 KPQAD 375 (449)
Q Consensus 371 ~~~~~ 375 (449)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 235
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-17 Score=122.06 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=70.6
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4589999996 899999999999999999999953 38999999999999999999999999999999999998
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
++...
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76553
No 236
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=128.86 Aligned_cols=86 Identities=22% Similarity=0.399 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEe-cCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIM-KGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~tg~~~g~afV~F~~~~~A~~Al~~l~--g~~i~g~~l 191 (449)
+...++|||+|||+++|+++|+.+|++||. |..|.++ .++.++.++|||||+|.+.++|.+|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecccccc
Q 013087 192 KCSAAQAKHR 201 (449)
Q Consensus 192 ~v~~~~~~~~ 201 (449)
+|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 237
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=6.9e-18 Score=135.16 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +|+..|.|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999988 9999999999999999999999 999999999999
Q ss_pred Eeecccc
Q 013087 193 CSAAQAK 199 (449)
Q Consensus 193 v~~~~~~ 199 (449)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9988643
No 238
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=118.30 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=67.2
Q ss_pred cE-EEEcCCCcCCCHHH----HHHHHhcC-CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 294 KA-LYVKNLPKDITQDR----LKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 294 ~~-l~V~nLp~~~t~e~----L~~~F~~~-G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
.+ |||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|||..|.||+|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 45 99999999999988 55899999 5999991 389999999999999999999999999999999
Q ss_pred EeCCCCCCCCC
Q 013087 368 SLAKPQADQKT 378 (449)
Q Consensus 368 ~~a~~~~~~~~ 378 (449)
+||+.+.....
T Consensus 79 ~~A~~~sd~~~ 89 (96)
T 2diu_A 79 SFTPKNRELCE 89 (96)
T ss_dssp ESSCCSCCCCC
T ss_pred EecCCCcceeE
Confidence 99998776543
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.2e-17 Score=126.96 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=74.3
Q ss_pred cccEEEEcCCCcCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 292 QVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
+.++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 35899999999999999999 9999999999999973 3456899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.|++++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99998654
No 240
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=125.42 Aligned_cols=83 Identities=24% Similarity=0.517 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999997 57889999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87654
No 241
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-18 Score=131.77 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV-TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 899999998 799999999999999999999985 9999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 242
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=126.55 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=72.0
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45899999999999999999999999987666 3456679999999999999999999999999999999999998
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
++...
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76653
No 243
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=128.91 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEecCCCCC---CcccEEEEEecCHHHHHHHHHHhCCCcccCee
Q 013087 117 PHGSEVYLGGIPHDASDDDLR---HFCKSIGEVTEVRIMKGKDSG---EAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~tg---~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~ 190 (449)
...++|||+|||+++++++|+ ++|++||.|..|+|+.++.++ +++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999987644 56699999999999999999999999999999
Q ss_pred EEEeecccccc
Q 013087 191 IKCSAAQAKHR 201 (449)
Q Consensus 191 l~v~~~~~~~~ 201 (449)
|+|.++.++.+
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987764
No 244
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=9.1e-18 Score=134.91 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEE--EEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC----cccCeeE
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC----ELKGKKI 191 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~----~i~g~~l 191 (449)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5689999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecccccc
Q 013087 192 KCSAAQAKHR 201 (449)
Q Consensus 192 ~v~~~~~~~~ 201 (449)
+|.++.+...
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999986543
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=7.9e-18 Score=123.09 Aligned_cols=73 Identities=16% Similarity=0.389 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCe-eE
Q 013087 119 GSEVYLGGIPHDA------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK-KI 191 (449)
Q Consensus 119 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~-~l 191 (449)
+++|||+|||+.+ |+++|+.+|++||.|..|+++ +.+|+++|||||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 45699999999999999999999999999999999 88
Q ss_pred EE
Q 013087 192 KC 193 (449)
Q Consensus 192 ~v 193 (449)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 246
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=3e-18 Score=128.26 Aligned_cols=80 Identities=23% Similarity=0.576 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecccc
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~~ 199 (449)
++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.+ |.+|+..|||..|.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred c
Q 013087 200 H 200 (449)
Q Consensus 200 ~ 200 (449)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 247
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=125.26 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||+++|+++|+.+|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 013087 196 AQAKHRLFIGN 206 (449)
Q Consensus 196 ~~~~~~~~v~~ 206 (449)
+.++..+++++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888777654
No 248
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=2.4e-17 Score=129.42 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=74.5
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+. .++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4899999999999999999999999999999998764 3389999999999999999999999999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 85 ~~~~ 88 (115)
T 3lqv_A 85 NRAF 88 (115)
T ss_dssp HHHT
T ss_pred Chhh
Confidence 5543
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=128.13 Aligned_cols=83 Identities=29% Similarity=0.487 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.....++|||+|||.++|+++|+++|++||.|..|+++.++ +.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999886 4589999999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1e-17 Score=131.74 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +|+..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999987 9999999999999999999999 999999999999
Q ss_pred Eeecccc
Q 013087 193 CSAAQAK 199 (449)
Q Consensus 193 v~~~~~~ 199 (449)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=129.95 Aligned_cols=81 Identities=21% Similarity=0.520 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+.+|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999986 99999999999999976
Q ss_pred cc
Q 013087 199 KH 200 (449)
Q Consensus 199 ~~ 200 (449)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 252
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=132.02 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=76.0
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCc---EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
..++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. +|+..|+||.|+|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 3589999999999999999999999998 89999999988 7779999999999999999999 99999999999999
Q ss_pred eCCCCC
Q 013087 369 LAKPQA 374 (449)
Q Consensus 369 ~a~~~~ 374 (449)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998754
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=129.47 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
..++++|||+|||+.+++++|+ .+|++||.|..|.+.. +++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998864 47899999999999999999999999999999999
Q ss_pred EEeecccccc
Q 013087 192 KCSAAQAKHR 201 (449)
Q Consensus 192 ~v~~~~~~~~ 201 (449)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999986543
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=125.22 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC--cccCeeEE
Q 013087 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~~l~ 192 (449)
+.++++|||+|||+ ++|+++|+.+|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999865 479999999999999999999875 49999999
Q ss_pred Eeeccccccc
Q 013087 193 CSAAQAKHRL 202 (449)
Q Consensus 193 v~~~~~~~~~ 202 (449)
|.++.....+
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999876654
No 255
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-18 Score=128.97 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC--CcccCeeEE
Q 013087 116 PPHGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~ 192 (449)
..++++|||+|||++ +|+++|+.+|++||.|..|+|++ ++|||||+|.+.++|.+|++.|++ ..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999974 468999999999999999998865 569999999
Q ss_pred EeecccccccccC
Q 013087 193 CSAAQAKHRLFIG 205 (449)
Q Consensus 193 v~~~~~~~~~~v~ 205 (449)
|.++..+..+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766544
No 256
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=133.47 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred c
Q 013087 196 A 196 (449)
Q Consensus 196 ~ 196 (449)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 257
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=4.3e-17 Score=127.97 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=72.6
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccE-EEEEeCCHHHHHHHHHHcCCceeCC--eEeEEEe
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDCSL 369 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~i~g--r~l~v~~ 369 (449)
...|||+||++.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3788999999999999999999999999999997643 677 9999999999999999999999988 9999999
Q ss_pred CCCCCCCC
Q 013087 370 AKPQADQK 377 (449)
Q Consensus 370 a~~~~~~~ 377 (449)
+++..-.-
T Consensus 103 ak~~~l~v 110 (130)
T 3zzy_A 103 SKLTSLNV 110 (130)
T ss_dssp CSCSSCCC
T ss_pred cCCCceeE
Confidence 99875443
No 258
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=122.91 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC--CCcccCeeEEEe
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKIKCS 194 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~--g~~i~g~~l~v~ 194 (449)
.++++|||+|||+++|+++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999999864 6899999999999999999774 677999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++..+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99754
No 259
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-18 Score=136.62 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999886666666788889999999999999999999 9999999999999999
Q ss_pred CCCC
Q 013087 371 KPQA 374 (449)
Q Consensus 371 ~~~~ 374 (449)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8754
No 260
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=126.91 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC--CcccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g--~~i~g~~l~ 192 (449)
..+++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456889999999999999999999999999999999875 68999999999999999998874 689999999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++..+.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99997653
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=127.53 Aligned_cols=80 Identities=15% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCe-e
Q 013087 118 HGSEVYLGGIPHDA------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK-K 190 (449)
Q Consensus 118 ~~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~-~ 190 (449)
..++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 45699999999999999999999999999999998 9
Q ss_pred EEEeecccc
Q 013087 191 IKCSAAQAK 199 (449)
Q Consensus 191 l~v~~~~~~ 199 (449)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988643
No 262
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.2e-17 Score=130.55 Aligned_cols=80 Identities=25% Similarity=0.516 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999999888999999999999999999999 6999999999999999875
Q ss_pred c
Q 013087 199 K 199 (449)
Q Consensus 199 ~ 199 (449)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 263
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=3.6e-17 Score=136.30 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 264
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=6.5e-17 Score=131.89 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=71.9
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC--eEeEEEeC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLA 370 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g--r~l~v~~a 370 (449)
..+|||+||++.+|+++|+++|++||.|.+|+|+... ++|||||+|.+.++|.+|+..|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4789999999999999999999999999999997543 37899999999999999999999999965 99999999
Q ss_pred CCCCC
Q 013087 371 KPQAD 375 (449)
Q Consensus 371 ~~~~~ 375 (449)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98754
No 265
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=126.98 Aligned_cols=82 Identities=20% Similarity=0.455 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc--------cC
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL--------KG 188 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i--------~g 188 (449)
...++|||+|||+++|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 457899999999999999999999999999999999998 799999999999999999999999999999 57
Q ss_pred eeEEEeecccc
Q 013087 189 KKIKCSAAQAK 199 (449)
Q Consensus 189 ~~l~v~~~~~~ 199 (449)
+.|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999888643
No 266
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=126.41 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999987 999999999999999999999 5999999999999988865
Q ss_pred c
Q 013087 199 K 199 (449)
Q Consensus 199 ~ 199 (449)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 267
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.1e-18 Score=135.27 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 268
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=123.39 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCC--cccCeeEEEe
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKCS 194 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~ 194 (449)
.++++|||+|||+++|+++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|++.|++. .|.|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999764 689999999999999999988765 4999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997654
No 269
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.8e-17 Score=126.62 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
.|...++|||+|||+++|+++|+++|++|| .|..+.+.. ..++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456778999999999999999999999999 899999864 348899999999999999999999999999999999
Q ss_pred eeccc
Q 013087 194 SAAQA 198 (449)
Q Consensus 194 ~~~~~ 198 (449)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98864
No 270
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1e-17 Score=120.64 Aligned_cols=75 Identities=20% Similarity=0.512 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
+|||+|||+++|+++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999998 6999999999999764
No 271
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=121.56 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=68.3
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..| +.++.++. ||||+|.+.++|.+|+. ||+..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4899999999999999999999999999998 33443333 99999999999999999 999999999999999876
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=4.5e-17 Score=127.51 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=67.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeE-----eEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----LDC 367 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~-----l~v 367 (449)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.|+. |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 489999999999999999999999999999999876 89999999999999999999999999998 777
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
..+.++..
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 77665443
No 273
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-17 Score=126.49 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred cEEEEcCC----CcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCC----HHH----HHHHHH--HcCCce
Q 013087 294 KALYVKNL----PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE----RSS----AMKALK--NTEKYE 359 (449)
Q Consensus 294 ~~l~V~nL----p~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~----~~~----A~~A~~--~lng~~ 359 (449)
..|||+|| |+.+++..|+.+|+.||.|.+|.++.|+.|+.++|||||+|.+ +.+ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 333 899988 789999
Q ss_pred eCCeEeEEEeCCC
Q 013087 360 IDGQVLDCSLAKP 372 (449)
Q Consensus 360 i~gr~l~v~~a~~ 372 (449)
|+||.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999764
No 274
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=119.37 Aligned_cols=77 Identities=29% Similarity=0.567 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+.+|++||.|..|+++ +|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 47999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 275
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-18 Score=133.72 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999987777777789999999999999999999999 999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 276
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.8e-17 Score=130.43 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=72.7
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEE--EEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
..++|||+|||+++|+++|+++|++| .|+ .|+|+.++. +.++|||||+|.+.++|.+||.. ++..|+||.|+|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 34899999999999999999999999 566 999999988 77799999999999999999995 77999999999999
Q ss_pred CCCCC
Q 013087 370 AKPQA 374 (449)
Q Consensus 370 a~~~~ 374 (449)
+.++.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 277
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=129.03 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446789999999999999999999999998 89999999988 9999999999999999999999 999999999999
Q ss_pred Eeecccc
Q 013087 193 CSAAQAK 199 (449)
Q Consensus 193 v~~~~~~ 199 (449)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988643
No 278
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.1e-17 Score=122.93 Aligned_cols=80 Identities=25% Similarity=0.504 Sum_probs=73.3
Q ss_pred hcCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 113 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
...+...++|||+|||.++|+++|+.+|++||.|..|++. +++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445668999999999999999999999999999999997 3578999999999999999999999999999999
Q ss_pred Eeeccc
Q 013087 193 CSAAQA 198 (449)
Q Consensus 193 v~~~~~ 198 (449)
|.++.+
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 998864
No 279
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=120.97 Aligned_cols=79 Identities=15% Similarity=0.371 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc--CeeEEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK--GKKIKC 193 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~--g~~l~v 193 (449)
+...++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999999753 689999999999999999999999999 999999
Q ss_pred eeccccc
Q 013087 194 SAAQAKH 200 (449)
Q Consensus 194 ~~~~~~~ 200 (449)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9997653
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=122.14 Aligned_cols=79 Identities=14% Similarity=0.315 Sum_probs=72.2
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEE-EecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v-~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
..++|||+|||+.+|+++|+++|++||.|..| .|+.++.+ +.|||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34899999999999999999999999999999 48877653 34999999999999999999999999999999999
Q ss_pred CCCC
Q 013087 371 KPQA 374 (449)
Q Consensus 371 ~~~~ 374 (449)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=123.19 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467999999999999999999999999987 55555 5699999999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97653
No 282
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=122.87 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC-----eeE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-----KKI 191 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g-----~~l 191 (449)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 799999999999999999999999999 999
Q ss_pred EEeeccccc
Q 013087 192 KCSAAQAKH 200 (449)
Q Consensus 192 ~v~~~~~~~ 200 (449)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998654
No 283
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=131.14 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=73.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcE----EEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v----~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
..+|||+|||+++|+++|+++|++||.| ..|+|+.+. +++++|||||+|.+.++|.+||.. |+..|+||.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 3899999999999999999999999976 589998885 677799999999999999999996 9999999999999
Q ss_pred eCCCCC
Q 013087 369 LAKPQA 374 (449)
Q Consensus 369 ~a~~~~ 374 (449)
.+.++.
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 284
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=123.89 Aligned_cols=81 Identities=32% Similarity=0.602 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred ecccccc
Q 013087 195 AAQAKHR 201 (449)
Q Consensus 195 ~~~~~~~ 201 (449)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 285
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=124.92 Aligned_cols=77 Identities=26% Similarity=0.235 Sum_probs=69.8
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccE-EEEEeCCHHHHHHHHHHcCCceeCC--eEeEEEe
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDCSL 369 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~i~g--r~l~v~~ 369 (449)
...|||+||++.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|.+|+..|||..|.| +.|+|.|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 356789999999999999999999999999999753 376 9999999999999999999999987 6999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
|+++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 998764
No 286
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=3.1e-17 Score=125.83 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=75.2
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4899999999999999999999999999999999998 78889999999999999999999 99999999999999987
Q ss_pred CCCC
Q 013087 373 QADQ 376 (449)
Q Consensus 373 ~~~~ 376 (449)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6543
No 287
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=6.2e-17 Score=136.57 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=78.9
Q ss_pred cccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446899999999999999999999999999999999998 777899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 986543
No 288
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=5.3e-17 Score=123.28 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
.+++++|||+|||+++++++|+ .+|++||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999999874 37789999999999999999999999999999999
Q ss_pred EEeecccccc
Q 013087 192 KCSAAQAKHR 201 (449)
Q Consensus 192 ~v~~~~~~~~ 201 (449)
+|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999986543
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-18 Score=128.73 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|.. .++.+..+++++|||||+|.+.++|.+|++ ||+..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999888 667777779999999999999999999998 9999999999999998
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 290
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=9e-17 Score=119.43 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++++++|+++|++| .|..|++. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 47899999999999999999999999999999999999
Q ss_pred ccccccccCC
Q 013087 197 QAKHRLFIGN 206 (449)
Q Consensus 197 ~~~~~~~v~~ 206 (449)
.....+++.|
T Consensus 76 ~~~~~~~~~n 85 (88)
T 1wg1_A 76 PTDALLCSGP 85 (88)
T ss_dssp CCCCCCSCCC
T ss_pred CCCceEecCC
Confidence 8887777765
No 291
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=114.38 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHH----HHHHHhcC-CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 117 PHGSEVYLGGIPHDASDDD----LRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
+..++|||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444599999999999988 55899999 599998 24 999999999999999999999999999999
Q ss_pred EEeecccccccccCC
Q 013087 192 KCSAAQAKHRLFIGN 206 (449)
Q Consensus 192 ~v~~~~~~~~~~v~~ 206 (449)
+|.+++.++.++...
T Consensus 77 ~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 77 IVSFTPKNRELCETS 91 (96)
T ss_dssp EEESSCCSCCCCCCC
T ss_pred EEEecCCCcceeEec
Confidence 999999888765543
No 292
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.4e-16 Score=119.27 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=71.3
Q ss_pred hcCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 113 LALPPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 113 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
...++..++|||+|||+ ++++++|+.+|++||.|..|++. +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999983 6899999999999999999999999999999
Q ss_pred EEeecccc
Q 013087 192 KCSAAQAK 199 (449)
Q Consensus 192 ~v~~~~~~ 199 (449)
+|.++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=4.2e-17 Score=128.33 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEE--EEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT--EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
.+...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 576 999999988 9999999999999999999998 688999999999
Q ss_pred Eeeccc
Q 013087 193 CSAAQA 198 (449)
Q Consensus 193 v~~~~~ 198 (449)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 294
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.3e-16 Score=139.76 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=78.5
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 013087 372 PQA 374 (449)
Q Consensus 372 ~~~ 374 (449)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 654
No 295
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=2e-16 Score=117.47 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=62.9
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce--eCCeEeEEEe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCSL 369 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--i~gr~l~v~~ 369 (449)
...+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ |++.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3489999999999999999999999999999999985 48999999999999983 45444 5699999999
Q ss_pred CCCCCC
Q 013087 370 AKPQAD 375 (449)
Q Consensus 370 a~~~~~ 375 (449)
|.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 296
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=121.65 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+.+|++||.|. +.++. +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66664 46889999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 297
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=122.51 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345789999999999999999999999874 67788888889999999999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998654
No 298
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=128.76 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV----TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
....++|||+|||+++|+++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+ +|+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Confidence 3467899999999999999999999999976 689999885 69999999999999999999998 59999999999
Q ss_pred EEeeccc
Q 013087 192 KCSAAQA 198 (449)
Q Consensus 192 ~v~~~~~ 198 (449)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987753
No 299
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=116.79 Aligned_cols=76 Identities=22% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHh-CCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~ 194 (449)
....++|||+|||+++|+++|+++|++||.|..|++++ ++|||||+|.+.++|.+|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34678999999999999999999999999999999986 4689999999999999999988 9999999999998
Q ss_pred ecc
Q 013087 195 AAQ 197 (449)
Q Consensus 195 ~~~ 197 (449)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 300
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.4e-16 Score=118.39 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=69.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+++++|+++|++| .|..|+|. .++|||||+|.+.++|.+|+..|||..|.|++|+|.|+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3899999999999999999999999 99999885 4489999999999999999999999999999999999976
Q ss_pred CC
Q 013087 373 QA 374 (449)
Q Consensus 373 ~~ 374 (449)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 301
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=2.3e-16 Score=120.56 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=72.7
Q ss_pred cccEEEEcCCCc-----CCCHHHHHHHHhcCCcEEEEEecCCCCC-CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEe
Q 013087 292 QVKALYVKNLPK-----DITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (449)
Q Consensus 292 ~~~~l~V~nLp~-----~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l 365 (449)
++++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|+..|||+.|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999962 2378999999999999999999988653 5679999999999999999999999999999999
Q ss_pred EEEeCCCC
Q 013087 366 DCSLAKPQ 373 (449)
Q Consensus 366 ~v~~a~~~ 373 (449)
+|.|+...
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99999763
No 302
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=9.7e-16 Score=140.59 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=74.1
Q ss_pred cccEEEEcCCCcCCCHHHHH----HHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 292 QVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
..++|||+|||+.+|+++|+ ++|+.||.|..|+|++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45899999999999999977 8999999999999987 4556999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.|++....
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99977553
No 303
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.1e-17 Score=124.11 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=71.6
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCCc
Q 013087 120 SEVYLGGI----PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT----KEL----ASQAIE--ELNSCE 185 (449)
Q Consensus 120 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~----~~~----A~~Al~--~l~g~~ 185 (449)
+.|||+|| |+.+++.+|+.+|+.||.|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred ccCeeEEEeeccc
Q 013087 186 LKGKKIKCSAAQA 198 (449)
Q Consensus 186 i~g~~l~v~~~~~ 198 (449)
|.|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987653
No 304
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=134.01 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+..+++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecccccc
Q 013087 195 AAQAKHR 201 (449)
Q Consensus 195 ~~~~~~~ 201 (449)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 305
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=5.7e-16 Score=132.68 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHcCCCCcccCCCCCeeeeCCCCCcccc-----ccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEec
Q 013087 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-----AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326 (449)
Q Consensus 252 ~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~ 326 (449)
+......|+.......+.+......+........+.. .....++|||+|||+.+|+++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 4455666776664455666666666666532221111 22345899999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 327 ~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++.. +.++|||||+|.+.++|.+|+..+ +..|.|+.|+|.+++.-
T Consensus 143 ~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 8875 666999999999999999999865 45999999999998753
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-17 Score=128.81 Aligned_cols=81 Identities=28% Similarity=0.440 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV----TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
....++|||+|||+++|+++|+.+|++||.| ..+++. +++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467899999999999999999999999998 455554 58899999999999999999999999999999999
Q ss_pred EEeeccccc
Q 013087 192 KCSAAQAKH 200 (449)
Q Consensus 192 ~v~~~~~~~ 200 (449)
+|.++.++.
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999997654
No 307
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=119.21 Aligned_cols=78 Identities=28% Similarity=0.479 Sum_probs=67.5
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|+.|+|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 489999999999999999999999999999999876 48999999999999986533 24556999999999998
Q ss_pred CCCCC
Q 013087 373 QADQK 377 (449)
Q Consensus 373 ~~~~~ 377 (449)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.2e-17 Score=135.02 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=71.5
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEE--------EecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKV--------VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v--------~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr 363 (449)
..++|||+|||+.+|+++|+.+|+.||.|..| ++. .++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34899999999999999999999999988764 332 3466699999999999999999999999999999
Q ss_pred EeEEEeCCCCCCC
Q 013087 364 VLDCSLAKPQADQ 376 (449)
Q Consensus 364 ~l~v~~a~~~~~~ 376 (449)
.|+|.|+++...+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999875543
No 309
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3e-17 Score=131.84 Aligned_cols=81 Identities=26% Similarity=0.391 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++|| |..|+|+.++. ++++|||||+|.+.++|.+|| .+|+..|.|+.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 67999999987 999999999999999999999 6999999999999988
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 310
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=117.20 Aligned_cols=79 Identities=28% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred ecccccc
Q 013087 195 AAQAKHR 201 (449)
Q Consensus 195 ~~~~~~~ 201 (449)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9976543
No 311
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.3e-16 Score=131.92 Aligned_cols=83 Identities=27% Similarity=0.373 Sum_probs=78.9
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
.++|||+|||+++|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 38999999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 312
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=3.2e-16 Score=120.95 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.....++|||+|||+++|+++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999997 5899999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 987643
No 313
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=116.61 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|||+++|+++|+.+|++||.|..|++++ +||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345688999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987653
No 314
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.1e-16 Score=131.19 Aligned_cols=82 Identities=26% Similarity=0.480 Sum_probs=78.4
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~ 373 (449)
++|||+|||+.+|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 89999999999999999999999999999999999988888999999999999999999999999999999999999875
Q ss_pred CC
Q 013087 374 AD 375 (449)
Q Consensus 374 ~~ 375 (449)
..
T Consensus 83 ~~ 84 (167)
T 1fxl_A 83 SA 84 (167)
T ss_dssp CG
T ss_pred cc
Confidence 54
No 315
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=6.3e-18 Score=132.91 Aligned_cols=84 Identities=23% Similarity=0.439 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--------VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
...++|||+|||+++|+++|+.+|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998889999999999999999999999999999999
Q ss_pred eeEEEeeccccc
Q 013087 189 KKIKCSAAQAKH 200 (449)
Q Consensus 189 ~~l~v~~~~~~~ 200 (449)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987653
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=4.7e-16 Score=119.31 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999863 59999999999999999999999999999999999
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.4e-16 Score=122.13 Aligned_cols=81 Identities=31% Similarity=0.580 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||+++|+++|+.+|++||.|..|+++.++ ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 79999999999999999999997 9999999999999887
Q ss_pred cccc
Q 013087 198 AKHR 201 (449)
Q Consensus 198 ~~~~ 201 (449)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 318
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.9e-16 Score=118.73 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 116 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.++.++|||+|||+ ++|+++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999998 99999999999999999999984 5899999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=4.9e-16 Score=115.33 Aligned_cols=70 Identities=24% Similarity=0.462 Sum_probs=66.6
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcC----C-------cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHH----G-------KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
.++|||+|||+.+|+++|+++|++| | .|..+++.++ +|||||+|.+.++|.+|+ .||+..|.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4899999999999999999999999 8 9999999876 799999999999999999 89999999
Q ss_pred CeEeEEEe
Q 013087 362 GQVLDCSL 369 (449)
Q Consensus 362 gr~l~v~~ 369 (449)
|+.|+|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 320
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.4e-16 Score=116.73 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSI--GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
...++|||+|||+++|+++|+.+|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 999999874 5699999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 997654
No 321
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=121.28 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||+++|+++|+.+|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999864 56899999999999999999999999999999999986
Q ss_pred c
Q 013087 198 A 198 (449)
Q Consensus 198 ~ 198 (449)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 322
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=5.8e-16 Score=134.20 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=72.4
Q ss_pred ccEEEEcCCC-cCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 293 VKALYVKNLP-KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp-~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
+++|||+||| +.+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4899999999 899999999999999999999998764 7999999999999999999999999999999999998
Q ss_pred CCC
Q 013087 372 PQA 374 (449)
Q Consensus 372 ~~~ 374 (449)
.+.
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 323
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=120.75 Aligned_cols=79 Identities=19% Similarity=0.387 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999988766 334889999999999999999999999999999999999998
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7543
No 324
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=5.8e-16 Score=127.63 Aligned_cols=80 Identities=23% Similarity=0.443 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.....++|||+|||+++|+++|+.+|++||.|..|+++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred ecccc
Q 013087 195 AAQAK 199 (449)
Q Consensus 195 ~~~~~ 199 (449)
++.++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98765
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=117.62 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEE-EecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR-IMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~-i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
...++|||+|||+++|+++|+.+|++||.|..|+ ++.++.++ .|||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999994 77776533 399999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8765
No 326
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=120.21 Aligned_cols=78 Identities=24% Similarity=0.456 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCC---CCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~t---g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v 193 (449)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||+.|++ +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999999 888888877 79999999999999999999998843 56666665
Q ss_pred eecc
Q 013087 194 SAAQ 197 (449)
Q Consensus 194 ~~~~ 197 (449)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 327
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=117.27 Aligned_cols=78 Identities=27% Similarity=0.472 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC-CcccCeeEEE
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS-CELKGKKIKC 193 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g-~~i~g~~l~v 193 (449)
+...++|||+|||+++|+++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 468999999999999999999999 9999999999
Q ss_pred eeccccc
Q 013087 194 SAAQAKH 200 (449)
Q Consensus 194 ~~~~~~~ 200 (449)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 328
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=115.24 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..| +.++.+++ ||||+|.+.++|.+|+. |++..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 55555454 99999999999999999 9999999999999988
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=126.07 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEE--------EEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV--------RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v--------~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i 186 (449)
.....++|||+|||+++|+++|+.+|++||.|..| ++. .+++++|||||+|.+.++|.+|+..|||..|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999999998764 333 3488999999999999999999999999999
Q ss_pred cCeeEEEeecccc
Q 013087 187 KGKKIKCSAAQAK 199 (449)
Q Consensus 187 ~g~~l~v~~~~~~ 199 (449)
.|+.|.|.++.+.
T Consensus 118 ~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 FGKPMVVQFARSA 130 (143)
T ss_dssp TTEECEEEECCCS
T ss_pred CCcEEEEEECCCC
Confidence 9999999998753
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=6.9e-16 Score=121.51 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.9
Q ss_pred cccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 292 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4589999996 699999999999999999999963 38999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013087 372 PQADQ 376 (449)
Q Consensus 372 ~~~~~ 376 (449)
++...
T Consensus 110 ~~~~~ 114 (121)
T 2bz2_A 110 KQPML 114 (121)
T ss_dssp SSCC-
T ss_pred CCCCC
Confidence 76543
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.3e-16 Score=117.58 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=69.9
Q ss_pred hcCCCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc----
Q 013087 113 LALPPHGSEVYL--GGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---- 186 (449)
Q Consensus 113 ~~~~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i---- 186 (449)
.....+.++||| +||++++|+++|+++|++||.|..|.++. .+|||||+|.+.++|.+|++.|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 344556789999 77999999999999999999999998864 368999999999999999999999988
Q ss_pred -cCeeEEEeecc
Q 013087 187 -KGKKIKCSAAQ 197 (449)
Q Consensus 187 -~g~~l~v~~~~ 197 (449)
.|+.|.|.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 68899998775
No 332
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=118.51 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=69.0
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCC---CCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEe
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG---QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~---~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~ 369 (449)
.++|||+|||+.+|+++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+||..|+ .++|+.|.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 48999999999999999999999999999 888888877 6889999999999999999999985 47888888876
Q ss_pred CCC
Q 013087 370 AKP 372 (449)
Q Consensus 370 a~~ 372 (449)
+..
T Consensus 85 ~~~ 87 (114)
T 2dnl_A 85 SPT 87 (114)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 333
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=9e-16 Score=119.25 Aligned_cols=74 Identities=24% Similarity=0.415 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 118 HGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
..++|||+|||++ +|+++|+.+|++||.|..|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 4689999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.5e-15 Score=123.89 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC--eeEEEe
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCS 194 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~ 194 (449)
....+|||+||++.+|+++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34467899999999999999999999999999999753 257899999999999999999999999966 999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998653
No 335
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.5e-15 Score=131.39 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=76.8
Q ss_pred ccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeC
Q 013087 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a 370 (449)
...++|||+|||+.+|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3458999999999999999999999999999999999999898999999999999999999985 999999999999999
Q ss_pred CCCCC
Q 013087 371 KPQAD 375 (449)
Q Consensus 371 ~~~~~ 375 (449)
.+...
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 86543
No 336
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.1e-15 Score=126.69 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
....++|||+|||.++|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cc
Q 013087 196 AQ 197 (449)
Q Consensus 196 ~~ 197 (449)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=114.04 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|| ++|+++|+.+|++||.|..|.|. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999984 4778999999999999999999999999999999999
Q ss_pred ccccc
Q 013087 196 AQAKH 200 (449)
Q Consensus 196 ~~~~~ 200 (449)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97654
No 338
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.2e-15 Score=133.13 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=71.6
Q ss_pred ccccccEEEEcCCCcCC---------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 289 AASQVKALYVKNLPKDI---------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 289 ~~~~~~~l~V~nLp~~~---------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
.....++|||+||+..+ ++++|+.+|++||.|.+|+|+.. +|||||+|.+.++|..|+..|||..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34456999999999998 79999999999999999999865 8999999999999999999999999
Q ss_pred e------------CCeEeEEEeCCCCCC
Q 013087 360 I------------DGQVLDCSLAKPQAD 375 (449)
Q Consensus 360 i------------~gr~l~v~~a~~~~~ 375 (449)
| .|+.|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987654
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.9e-15 Score=118.62 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccE-EEEEecCHHHHHHHHHHhCCCcccC--eeEEE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY-AFVTFRTKELASQAIEELNSCELKG--KKIKC 193 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~-afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v 193 (449)
..-..|||+||++.+|+++|+++|++||.|.+|+++.. .+|| |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34457889999999999999999999999999998764 3577 9999999999999999999999998 99999
Q ss_pred eeccccc
Q 013087 194 SAAQAKH 200 (449)
Q Consensus 194 ~~~~~~~ 200 (449)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998654
No 340
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=3.4e-15 Score=114.00 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEecCCCC-CCcccEEEEEecCHHHHHHHHHHhCCCcccCe
Q 013087 116 PPHGSEVYLGGIPH-----DASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (449)
Q Consensus 116 ~~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~t-g~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~ 189 (449)
+.++++|+|+||.. +-++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999963 3478999999999999999999998754 68999999999999999999999999999999
Q ss_pred eEEEeeccc
Q 013087 190 KIKCSAAQA 198 (449)
Q Consensus 190 ~l~v~~~~~ 198 (449)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=1.6e-15 Score=146.13 Aligned_cols=83 Identities=16% Similarity=0.408 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+.||+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 013087 197 QAK 199 (449)
Q Consensus 197 ~~~ 199 (449)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2.4e-15 Score=111.58 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc--ccCeeEE
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE--LKGKKIK 192 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~--i~g~~l~ 192 (449)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999874 78999999999999984 45555 4599999
Q ss_pred Eeeccccc
Q 013087 193 CSAAQAKH 200 (449)
Q Consensus 193 v~~~~~~~ 200 (449)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987653
No 343
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=3e-15 Score=114.36 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=71.6
Q ss_pred cccEEEEcCC--CcCCC--------HHHHHHHHhcCCcEEEEEecCCCCC--CCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 292 QVKALYVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 292 ~~~~l~V~nL--p~~~t--------~e~L~~~F~~~G~v~~v~i~~~~~~--~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
++++|+|.|+ |..+. +++|++.|++||.|.+|+|++++.+ +.++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4589999998 33333 4789999999999999999998865 3568999999999999999999999999
Q ss_pred eCCeEeEEEeCCCC
Q 013087 360 IDGQVLDCSLAKPQ 373 (449)
Q Consensus 360 i~gr~l~v~~a~~~ 373 (449)
|+||.|+|.|+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 344
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.4e-15 Score=118.90 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCee-----EE
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-----IK 192 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~-----l~ 192 (449)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5689999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred Eeeccc
Q 013087 193 CSAAQA 198 (449)
Q Consensus 193 v~~~~~ 198 (449)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 665543
No 345
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-15 Score=114.73 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=70.4
Q ss_pred ccccEEEEcCCCcCC-----------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 291 SQVKALYVKNLPKDI-----------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 291 ~~~~~l~V~nLp~~~-----------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
..+++|+|+||.... ++++|+++|++||.|..|.|. ++. ++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 346999999994433 258999999999999999773 332 58999999999999999999999999
Q ss_pred eCCeEeEEEeCCCCCCCC
Q 013087 360 IDGQVLDCSLAKPQADQK 377 (449)
Q Consensus 360 i~gr~l~v~~a~~~~~~~ 377 (449)
|.||.|+|.|+.++....
T Consensus 89 ~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp ETTEECEEEECCSCCCSS
T ss_pred ECCcEEEEEEeCCCCCcc
Confidence 999999999998865543
No 346
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=2.7e-15 Score=126.85 Aligned_cols=80 Identities=30% Similarity=0.590 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999888999999999999999999999999999999999999987
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.6e-15 Score=111.37 Aligned_cols=72 Identities=25% Similarity=0.540 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
...++|||+|||+++|+++|+++|++| | .|..+++..+ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 9999998653 789999999999999999 899999
Q ss_pred ccCeeEEEee
Q 013087 186 LKGKKIKCSA 195 (449)
Q Consensus 186 i~g~~l~v~~ 195 (449)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 348
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=4e-15 Score=130.82 Aligned_cols=84 Identities=20% Similarity=0.495 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||.++|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7653
No 349
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=4.6e-15 Score=128.53 Aligned_cols=84 Identities=29% Similarity=0.561 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEee
Q 013087 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 195 (449)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccc
Q 013087 196 AQAK 199 (449)
Q Consensus 196 ~~~~ 199 (449)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8765
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=7.1e-15 Score=115.02 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccE-EEEEecCHHHHHHHHHHhCCCcccC--eeEEEeec
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY-AFVTFRTKELASQAIEELNSCELKG--KKIKCSAA 196 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~-afV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~~ 196 (449)
..|||+||++.+|+++|+.+|++||.|..|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999752 276 9999999999999999999999988 69999999
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 351
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.1e-15 Score=126.84 Aligned_cols=80 Identities=23% Similarity=0.556 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5789999999999999999999999999999999998889999999999999999999998 899999999999999876
Q ss_pred c
Q 013087 199 K 199 (449)
Q Consensus 199 ~ 199 (449)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 352
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=6e-15 Score=125.06 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=75.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCC--CcccEEEEEeCCHHHHHHHHHHcCCceeC---CeEeEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYEID---GQVLDC 367 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~i~---gr~l~v 367 (449)
.++|||+|||+++|+++|+++|++||.|..|+|++++.++ .++|||||+|.+.++|.+|+..||+..+. ++.|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4899999999999999999999999999999999998886 77999999999999999999999998876 688889
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.++.+...
T Consensus 83 ~~~~~~~~ 90 (175)
T 3nmr_A 83 KPADSEKN 90 (175)
T ss_dssp EECGGGCC
T ss_pred cccccccc
Confidence 88876543
No 353
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=2.5e-14 Score=126.69 Aligned_cols=83 Identities=25% Similarity=0.301 Sum_probs=75.9
Q ss_pred cccccccEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeE
Q 013087 288 SAASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~ 366 (449)
......++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3344568999999999 99999999999999999999999886 78999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 013087 367 CSLAKPQAD 375 (449)
Q Consensus 367 v~~a~~~~~ 375 (449)
|.++.+...
T Consensus 104 v~~a~~~~~ 112 (229)
T 2adc_A 104 ITLSKHQNV 112 (229)
T ss_dssp EECCSCCCC
T ss_pred EEEecCccc
Confidence 999987643
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=8.8e-15 Score=113.87 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=70.9
Q ss_pred cccEEEEcCCC--cCC---CHHHHHHHHhcCCcEEEEEecCCCC----CCCcccEEEEEeCCHHHHHHHHHHcCCceeCC
Q 013087 292 QVKALYVKNLP--KDI---TQDRLKELFAHHGKITKVVIPPAKP----GQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (449)
Q Consensus 292 ~~~~l~V~nLp--~~~---t~e~L~~~F~~~G~v~~v~i~~~~~----~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g 362 (449)
++++|+|.|+- ..+ .+++|++.|++||.|.+|+|++++. ++.++|++||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45899999983 222 3689999999999999999998865 34568999999999999999999999999999
Q ss_pred eEeEEEeCCC
Q 013087 363 QVLDCSLAKP 372 (449)
Q Consensus 363 r~l~v~~a~~ 372 (449)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.4e-14 Score=114.04 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
.+...++|||+|| ++|+++|+.+|++||.|..|.+. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999996 79999999999999999999995 467999999999999999999999999999999999
Q ss_pred eccccc
Q 013087 195 AAQAKH 200 (449)
Q Consensus 195 ~~~~~~ 200 (449)
++.+..
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 987653
No 356
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.3e-14 Score=131.17 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=73.6
Q ss_pred cccccccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 288 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
......++|||+|||+++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34455689999999999999999999999999999999765 799999999999999999999999999999999
Q ss_pred EeCCCC
Q 013087 368 SLAKPQ 373 (449)
Q Consensus 368 ~~a~~~ 373 (449)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 999864
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.5e-15 Score=113.25 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=64.1
Q ss_pred EcCCCcCCCHHHHHHHH------------hcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEe
Q 013087 298 VKNLPKDITQDRLKELF------------AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (449)
Q Consensus 298 V~nLp~~~t~e~L~~~F------------~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l 365 (449)
+.||+..+++++|+++| ++||.|.+|+|+++.. +.++|||||+|.+.++|.+|+..|||+.|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888887777666 9999999999998876 5679999999999999999999999999999999
Q ss_pred EEEeC
Q 013087 366 DCSLA 370 (449)
Q Consensus 366 ~v~~a 370 (449)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.3e-15 Score=110.36 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeec
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~ 196 (449)
...++|||+|||+++|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999864 78999999999999986542 234558999999988
Q ss_pred cccc
Q 013087 197 QAKH 200 (449)
Q Consensus 197 ~~~~ 200 (449)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.8e-14 Score=122.16 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeeccc
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~~ 198 (449)
.++|||+|||+++|+++|+.+|++||.|..|+|+++.. +.++|||||+|.+.++|.+|+.. .+..|.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999875 99999999999999999999985 45699999999987753
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=123.57 Aligned_cols=77 Identities=26% Similarity=0.330 Sum_probs=73.0
Q ss_pred cEEEEcCCCc-CCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 294 KALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 294 ~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 8999999999 99999999999999999999999886 78999999999999999999999999999999999987
Q ss_pred CCC
Q 013087 373 QAD 375 (449)
Q Consensus 373 ~~~ 375 (449)
...
T Consensus 79 ~~~ 81 (198)
T 1qm9_A 79 QNV 81 (198)
T ss_dssp CSC
T ss_pred CCc
Confidence 643
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=104.00 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=59.2
Q ss_pred cCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCCCCCC
Q 013087 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (449)
Q Consensus 303 ~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~~~~~ 376 (449)
..+|+++|+++|++||.|..|+|+. .++|||||+|.+.++|..|+..+++ +.|++|+|.|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5689999999999999999999983 4589999999999999999998655 67999999999876643
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9e-14 Score=108.09 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=72.1
Q ss_pred cCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013087 114 ALPPHGSEVYLGGIPHDAS-----------DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (449)
Q Consensus 114 ~~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~ 182 (449)
..+..+++|+|+||....+ +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3566789999999954332 5799999999999999966 443 389999999999999999999999
Q ss_pred CCcccCeeEEEeecccccc
Q 013087 183 SCELKGKKIKCSAAQAKHR 201 (449)
Q Consensus 183 g~~i~g~~l~v~~~~~~~~ 201 (449)
|..|.|+.|+|.++.+...
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999877554
No 363
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=3.8e-14 Score=120.09 Aligned_cols=77 Identities=19% Similarity=0.407 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEeecc
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~~~ 197 (449)
..++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988766 4458999999999999999999999999999999999999987
Q ss_pred cc
Q 013087 198 AK 199 (449)
Q Consensus 198 ~~ 199 (449)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=4.9e-14 Score=123.06 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013087 116 PPHGSEVYLGGIPHDA---------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i 186 (449)
....++|||+||+..+ ++++|+.+|++||.|..|+|+. ++|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 478999999999999999999999999
Q ss_pred ------------cCeeEEEeeccccc
Q 013087 187 ------------KGKKIKCSAAQAKH 200 (449)
Q Consensus 187 ------------~g~~l~v~~~~~~~ 200 (449)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=9.6e-14 Score=105.99 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCEEEEEEecCCCC--CCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 118 HGSEVYLGGI--PHDAS--------DDDLRHFCKSIGEVTEVRIMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 118 ~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~t--g~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
+++.|.|.|+ |..+. +++|++.|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999988764 3689999999999999999999999999
Q ss_pred ccCeeEEEeeccc
Q 013087 186 LKGKKIKCSAAQA 198 (449)
Q Consensus 186 i~g~~l~v~~~~~ 198 (449)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.7e-13 Score=104.64 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=67.2
Q ss_pred cccEEEEcCCCcCC----------CHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 292 QVKALYVKNLPKDI----------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 292 ~~~~l~V~nLp~~~----------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
++++|.|.|+-... .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+..|||+.|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35899999983221 236899999999999999998764 3899999999999999999999999999
Q ss_pred CeEeEEEeCCCC
Q 013087 362 GQVLDCSLAKPQ 373 (449)
Q Consensus 362 gr~l~v~~a~~~ 373 (449)
||.|+|.|+...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998753
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=2.3e-13 Score=105.78 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHhcCCCEEEEEEecCCC----CCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 118 HGSEVYLGGIPH--D---ASDDDLRHFCKSIGEVTEVRIMKGKD----SGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 118 ~~~~l~v~nLp~--~---~t~~~l~~~f~~~G~v~~v~i~~~~~----tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
++++|+|.|+-. + -.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999942 2 23688999999999999999998864 35788999999999999999999999999999
Q ss_pred eeEEEeeccc
Q 013087 189 KKIKCSAAQA 198 (449)
Q Consensus 189 ~~l~v~~~~~ 198 (449)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=6.2e-14 Score=106.91 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=62.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 124 LGGIPHDASDDDLRHFC------------KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 124 v~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
+.|||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555666676666555 9999999999998865 7899999999999999999999999999999999
Q ss_pred EEeec
Q 013087 192 KCSAA 196 (449)
Q Consensus 192 ~v~~~ 196 (449)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5.7e-13 Score=122.82 Aligned_cols=75 Identities=20% Similarity=0.413 Sum_probs=66.5
Q ss_pred ccccEEEEcC--CCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC---Ce--
Q 013087 291 SQVKALYVKN--LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID---GQ-- 363 (449)
Q Consensus 291 ~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~---gr-- 363 (449)
.++++|||+| |++.+|+++|+++|++||.|..|.|... ||||||+|.+.++|.+|+..|||..+- |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT------CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3458999999 5789999999999999999999998763 799999999999999999999999883 45
Q ss_pred EeEEEeCC
Q 013087 364 VLDCSLAK 371 (449)
Q Consensus 364 ~l~v~~a~ 371 (449)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68889985
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=92.86 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=63.1
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 119 GSEVYLGGIP-------HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 119 ~~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
..+|.|.-.. .++|+++|+.+|++||.|..|+|+ ++++|||||+|.+.++|..|++.++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4567776654 468999999999999999999998 3588999999999999999998644 4689999
Q ss_pred EEeeccccc
Q 013087 192 KCSAAQAKH 200 (449)
Q Consensus 192 ~v~~~~~~~ 200 (449)
+|.++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987543
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1.5e-11 Score=94.79 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 116 PPHGSEVYLGGIPHDA----------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
|.+++.|.|.|+=..- .+++|++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999984321 134689999999999999997652 58999999999999999999999999
Q ss_pred ccCeeEEEeeccc
Q 013087 186 LKGKKIKCSAAQA 198 (449)
Q Consensus 186 i~g~~l~v~~~~~ 198 (449)
+.||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998753
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.7e-12 Score=115.30 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=67.2
Q ss_pred hcCCCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCccc---
Q 013087 113 LALPPHGSEVYLGG--IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK--- 187 (449)
Q Consensus 113 ~~~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~--- 187 (449)
.....++.+|||+| |++.+|+++|+++|++||.|..|++.. +||||||+|.+.++|.+|++.|||..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 33456788999999 578999999999999999999988753 5799999999999999999999999883
Q ss_pred Ce--eEEEeecc
Q 013087 188 GK--KIKCSAAQ 197 (449)
Q Consensus 188 g~--~l~v~~~~ 197 (449)
|+ .|.|.++.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 45 56776663
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.7e-11 Score=86.96 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=62.3
Q ss_pred cccEEEEcCCC----cCCCH----HHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCe
Q 013087 292 QVKALYVKNLP----KDITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (449)
Q Consensus 292 ~~~~l~V~nLp----~~~t~----e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr 363 (449)
+..+|+|.-++ ..+-. .+|.+.|++||.|..++|..+ .+||+|.+.++|.+|+. |||..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34678887766 23333 678999999999999999987 38999999999999999 999999999
Q ss_pred EeEEEeCCCC
Q 013087 364 VLDCSLAKPQ 373 (449)
Q Consensus 364 ~l~v~~a~~~ 373 (449)
.|+|.++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.9e-11 Score=92.35 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=68.9
Q ss_pred cccccEEEEcCCCcC-CCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCC-HHHHHHHHHHcC--CceeCCeEe
Q 013087 290 ASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE-RSSAMKALKNTE--KYEIDGQVL 365 (449)
Q Consensus 290 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~-~~~A~~A~~~ln--g~~i~gr~l 365 (449)
...++.|||+||+.. ++.++|+++|++||.|..|.+.++. ..|||.|.+ ..+|..|+..|| +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 334589999999999 9999999999999999999999885 479999999 899999999996 788999999
Q ss_pred EEEeCCC
Q 013087 366 DCSLAKP 372 (449)
Q Consensus 366 ~v~~a~~ 372 (449)
++.+...
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9987653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.7e-10 Score=88.83 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecC-HHHHHHHHHHhC--CCcccCeeE
Q 013087 116 PPHGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT-KELASQAIEELN--SCELKGKKI 191 (449)
Q Consensus 116 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~-~~~A~~Al~~l~--g~~i~g~~l 191 (449)
-+.++.|||+||+.+ ++.++|+.+|++||.|..|.+.++.. .|||.|.+ ..+|..|+..++ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999988764 69999999 899999999984 778899888
Q ss_pred EEeecc
Q 013087 192 KCSAAQ 197 (449)
Q Consensus 192 ~v~~~~ 197 (449)
++....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 886543
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.9e-10 Score=82.58 Aligned_cols=73 Identities=27% Similarity=0.349 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 117 PHGSEVYLGGIP----HDASD----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 117 ~~~~~l~v~nLp----~~~t~----~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
++..||+|.-++ .+.-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 466788888877 23334 5688999999999999998863 8999999999999998 99999999
Q ss_pred eeEEEeeccc
Q 013087 189 KKIKCSAAQA 198 (449)
Q Consensus 189 ~~l~v~~~~~ 198 (449)
|.|+|..+.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.5e-10 Score=83.44 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=62.3
Q ss_pred ccccEEEEcCCCcC-----CCH----HHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeC
Q 013087 291 SQVKALYVKNLPKD-----ITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (449)
Q Consensus 291 ~~~~~l~V~nLp~~-----~t~----e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~ 361 (449)
++..+|+|.-++.. +-. .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||. |||..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34478999888633 222 5689999999999999999883 9999999999999999 9999999
Q ss_pred CeEeEEEeCCC
Q 013087 362 GQVLDCSLAKP 372 (449)
Q Consensus 362 gr~l~v~~a~~ 372 (449)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=3.5e-09 Score=92.98 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCHHHHHHHHhcCCcEEEEEecCCC----CCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCCC
Q 013087 305 ITQDRLKELFAHHGKITKVVIPPAK----PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (449)
Q Consensus 305 ~t~e~L~~~F~~~G~v~~v~i~~~~----~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~~ 372 (449)
-.+++|++.|++||.|.+|.|+++. .++.++|++||+|.+.++|.+|+..|||+.|+||.|+|.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999998544 3457799999999999999999999999999999999999864
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.7e-09 Score=77.97 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013087 115 LPPHGSEVYLGGIPHD-----ASD----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~ 185 (449)
.-++..||+|.-++.+ +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3457789999998743 222 4588999999999999999873 9999999999999998 99999
Q ss_pred ccCeeEEEeec
Q 013087 186 LKGKKIKCSAA 196 (449)
Q Consensus 186 i~g~~l~v~~~ 196 (449)
+.||.|+|.+.
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=1.8e-08 Score=88.30 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=67.7
Q ss_pred CCCeEEEcCCC-----CCCCHHHHHHHHhcCCCEEEEEEecCC----CCCCcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 118 HGSEVYLGGIP-----HDASDDDLRHFCKSIGEVTEVRIMKGK----DSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 118 ~~~~l~v~nLp-----~~~t~~~l~~~f~~~G~v~~v~i~~~~----~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
..+.+.+.|+- ..-.+++|+..|++||.|.+|.|+++. .+++++|++||+|.+.++|.+|+..|||..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 44566666653 234567899999999999999998554 445899999999999999999999999999999
Q ss_pred eeEEEeeccc
Q 013087 189 KKIKCSAAQA 198 (449)
Q Consensus 189 ~~l~v~~~~~ 198 (449)
|.|.|.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999998763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.2e-08 Score=73.36 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=66.9
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcC-----CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 294 KALYVKNLPKDITQDRLKELFAHH-----GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~-----G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
++|-|-|||..+++..|+.++.++ |.|+.|.+..+ .+=|+|+|.+...|.+|.-+|+|..|.||.|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 899999999999999999999999 99999999998 4679999999999999999999999999999986
Q ss_pred eC
Q 013087 369 LA 370 (449)
Q Consensus 369 ~a 370 (449)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.2e-06 Score=64.30 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeE
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSI-----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l 191 (449)
...++|-|-|||..++...|+.++..+ |.|..|.+..+. +=|+|+|.+...|-+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347899999999999999999999999 999999999875 479999999999999988899999999999
Q ss_pred EEeec
Q 013087 192 KCSAA 196 (449)
Q Consensus 192 ~v~~~ 196 (449)
+|...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.7e-05 Score=57.80 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSI-----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
-.++|.|.|||..+.++.|.-+|+.- |.|..|.... +-|+|+|.+...|++.|+ ...+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 46799999999999999999999872 6899988755 479999999999999996 457889999999
Q ss_pred Eeeccc--ccccccCCCCCCCC
Q 013087 193 CSAAQA--KHRLFIGNVPRNWG 212 (449)
Q Consensus 193 v~~~~~--~~~~~v~~lp~~~~ 212 (449)
|....+ ..++++.+|++..+
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 987554 46899999988764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=4.9e-06 Score=61.07 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=63.0
Q ss_pred cEEEEcCCCcCC-C----HHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEE
Q 013087 294 KALYVKNLPKDI-T----QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (449)
Q Consensus 294 ~~l~V~nLp~~~-t----~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~ 368 (449)
++|+|.||+..+ . .+.++.+|..|+.+.....++.- .-..|.|.+.++|.+|...|++..|.|+.|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 889999998765 2 26789999999987776666552 357899999999999999999999999999999
Q ss_pred eCCCC
Q 013087 369 LAKPQ 373 (449)
Q Consensus 369 ~a~~~ 373 (449)
|+.+-
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99843
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=3.5e-05 Score=56.51 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEE
Q 013087 118 HGSEVYLGGIPHDA-S----DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (449)
Q Consensus 118 ~~~~l~v~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~ 192 (449)
-.++|+|.||+..+ + ...++.+|..|+++.....++.- .-..|.|.+.++|.+|...|++..+.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998765 2 24678999999999998887753 3679999999999999999999999999999
Q ss_pred Eeeccc
Q 013087 193 CSAAQA 198 (449)
Q Consensus 193 v~~~~~ 198 (449)
|.++++
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999873
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.00019 Score=52.40 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=62.4
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcC-----CcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEE
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHH-----GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~-----G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v 367 (449)
.++|.|.|||..++++.|.-+|++- |.|..|.... +-|+|+|.+...|.+.|+. ..+.|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 3899999999999999999999872 5699998865 3699999999999999984 477899999999
Q ss_pred EeCCCCCC
Q 013087 368 SLAKPQAD 375 (449)
Q Consensus 368 ~~a~~~~~ 375 (449)
.-..+...
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 77655443
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=9.8e-05 Score=53.33 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=57.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCC--CcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 120 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
++|.||+||+++|++++.+.+..+..+.-..++..+.+. ....-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999888777776665432 233469999999999999999999998754
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.0004 Score=50.12 Aligned_cols=78 Identities=10% Similarity=0.143 Sum_probs=62.0
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCC--CcccEEEEEeCCHHHHHHHHHHcCCceeCC-----eEeE
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVLD 366 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~i~g-----r~l~ 366 (449)
.+|.|++||+.+|++++.+.++.+..+........+.+. ..-.-|||.|.+.+++..-...++|+.|-+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 579999999999999999999999888777765544322 223579999999999999999999988753 2446
Q ss_pred EEeCC
Q 013087 367 CSLAK 371 (449)
Q Consensus 367 v~~a~ 371 (449)
|.+|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66665
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.0005 Score=51.96 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=59.1
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCC-eEeEEEeCC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVLDCSLAK 371 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~g-r~l~v~~a~ 371 (449)
.+.|.|-+.|... ...|...|++||.|++...... ..+..|.|.+..+|.+||.. ||..|+| -.|=|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4789999999874 6778899999999999887322 46999999999999999994 9999985 567777654
Q ss_pred C
Q 013087 372 P 372 (449)
Q Consensus 372 ~ 372 (449)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.30 E-value=0.00068 Score=48.78 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=47.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013087 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (449)
Q Consensus 115 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~ 182 (449)
.|.....++| ++|+.+...||.++|+.||-|. |+.+.| ..|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445566777 9999999999999999999543 555555 489999999999999998653
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.001 Score=50.27 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccC-eeEEEeec
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-KKIKCSAA 196 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g-~~l~v~~~ 196 (449)
..+-|.|-+.|+.. ...|..+|++||.|.+..... ....-.|.|.++.+|.+||. .||..|.| --|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35789999999985 567889999999999988722 33589999999999999997 89999985 55666655
Q ss_pred c
Q 013087 197 Q 197 (449)
Q Consensus 197 ~ 197 (449)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.00088 Score=48.20 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=44.8
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
..++| +.|..+...||.++|+.||.| .|+-+.+ ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 67777 999999999999999999843 3444444 379999999999999999763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.003 Score=45.75 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=58.4
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCC--CcccEEEEEeCCHHHHHHHHHHcCCceeCC-----eEeE
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ--ERSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVLD 366 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~i~g-----r~l~ 366 (449)
-+|.|+.||+.+|++++.+.++..-.+..........+. ..-..|||.|.+.++...-...++|..|-+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 689999999999999999998877666554444333221 112468999999999999999999988743 3456
Q ss_pred EEeCC
Q 013087 367 CSLAK 371 (449)
Q Consensus 367 v~~a~ 371 (449)
|.+|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77664
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.00084 Score=48.47 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=45.5
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
..++| +.|..+...||.++|+.||. ..|.-+.+ ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 56777 99999999999999999983 44555555 389999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.00081 Score=48.75 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCC--CcccEEEEEecCHHHHHHHHHHhCCCcccC
Q 013087 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELKG 188 (449)
Q Consensus 118 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~A~~Al~~l~g~~i~g 188 (449)
.+-+|.||.||+.+|++++.+.+..+-.+....++..+.+. ..-.-|||.|.+.++.....+..+|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35579999999999999988877766554333333322221 122359999999999999999999988754
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0018 Score=46.80 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=44.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013087 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (449)
Q Consensus 121 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~ 182 (449)
.++| ++|+.+...||.++|+.|| -..|+.+.+ ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 444666655 489999999999999998764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.41 E-value=0.0051 Score=47.12 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=56.1
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEE-EEecCCCC--------CC-----CcccEEEEEeCCHHHHHHHHHHcCCce
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKP--------GQ-----ERSRYGFVHFAERSSAMKALKNTEKYE 359 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~--------~~-----~~kg~afV~F~~~~~A~~A~~~lng~~ 359 (449)
..|.|-+.|... ...|.+.|++||.|.+ +.+.+... .. ...+...|+|.+..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 567788887654 4567789999999876 33322110 00 1245789999999999999994 9999
Q ss_pred eCCeEeEEEeCCC
Q 013087 360 IDGQVLDCSLAKP 372 (449)
Q Consensus 360 i~gr~l~v~~a~~ 372 (449)
|+|..|=|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887754
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.13 E-value=0.0049 Score=47.24 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecC-------------CCCC-CcccEEEEEecCHHHHHHHHHHhCCC
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-------------KDSG-EAKGYAFVTFRTKELASQAIEELNSC 184 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-------------~~tg-~~~g~afV~F~~~~~A~~Al~~l~g~ 184 (449)
.+-|.|-+.|.+.+ ..|..+|++||.|.+-.-..+ +... .......|+|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45688889988765 467789999999877221111 0001 124567999999999999997 8999
Q ss_pred cccCeeEEEeecc
Q 013087 185 ELKGKKIKCSAAQ 197 (449)
Q Consensus 185 ~i~g~~l~v~~~~ 197 (449)
.|.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887765
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.50 E-value=0.0076 Score=57.48 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHH
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~ 179 (449)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789998 79999999999999999999999998764 2699999999999998765
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.33 E-value=0.0062 Score=58.09 Aligned_cols=55 Identities=15% Similarity=0.350 Sum_probs=42.9
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
+.|+|. .|..+++.+|.++|++||.|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 889997 79999999999999999999999998754 35999999999999877764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.20 E-value=1.5 Score=42.63 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=45.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ln 356 (449)
...++|+ +|..+...+|.++|+.||. .+|+.+.+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4677777 8889999999999999995 35555544 379999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.63 E-value=1.9 Score=41.88 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013087 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183 (449)
Q Consensus 119 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g 183 (449)
...++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4456665 99999999999999999954 4555443 4799999999999999998753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=76.00 E-value=6.9 Score=26.58 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=39.8
Q ss_pred cCCCHHHHHHHHhcCC-----cEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHcCCceeCCeEeEEEeCC
Q 013087 303 KDITQDRLKELFAHHG-----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (449)
Q Consensus 303 ~~~t~e~L~~~F~~~G-----~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~i~gr~l~v~~a~ 371 (449)
..+..-+|..++..-+ .|-.|.|..+ |.||+-. ...|..++..|++..+.|+.++|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 3455666666666443 3778888644 8899884 566888999999999999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.30 E-value=33 Score=23.80 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=44.7
Q ss_pred ccEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 293 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
.+-|.|-|+|..+-..++--.....|---.|..+ -|.|.|.|.+..+.+.|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3778899999999988887777777765566554 467999999999999999876
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=63.78 E-value=34 Score=23.75 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013087 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183 (449)
Q Consensus 117 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g 183 (449)
...|-|.|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++...|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 3578899999999999999888888887655565533 5899999999999999987643
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.54 E-value=32 Score=23.11 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=41.2
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhcCC-----CEEEEEEecCCCCCCcccEEEEEecCHHHHHHHHHHhCCCcccCeeEEEe
Q 013087 121 EVYLGGI-PHDASDDDLRHFCKSIG-----EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (449)
Q Consensus 121 ~l~v~nL-p~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~tg~~~g~afV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 194 (449)
+|||..= -..+...+|..++..-+ .|-.|.+..+ |.||+-... .|..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555321 23566778887776543 3677777543 788887655 4667888899999999999887
Q ss_pred ec
Q 013087 195 AA 196 (449)
Q Consensus 195 ~~ 196 (449)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.98 E-value=58 Score=26.11 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=36.0
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCCEEEEEEecCCCCCCcccEEEEEecCHHH
Q 013087 121 EVYLGGIPH-D--------ASDDDLRHFC--KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173 (449)
Q Consensus 121 ~l~v~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 173 (449)
++.|-|+|. . .....|++.| +.|.++. |+.+..+ ...+|+|.|.|.+--.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 577888887 2 3456899977 8999876 4444544 3478899999998643
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.57 E-value=89 Score=20.20 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=42.6
Q ss_pred cEEEEcCCCcCCCHHHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 294 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
.++.|.++.-.--...|.+.+.. ..|..+.+-.. .+.+.|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 67899999888888999999998 77888877554 46788998866666777764
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.15 E-value=45 Score=26.76 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=37.4
Q ss_pred cEEEEcCCCc-C--------CCHHHHHHHH--hcCCcEEEEEecCCCCCCCcccEEEEEeCCHHH-HHHHHH
Q 013087 294 KALYVKNLPK-D--------ITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSS-AMKALK 353 (449)
Q Consensus 294 ~~l~V~nLp~-~--------~t~e~L~~~F--~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~-A~~A~~ 353 (449)
-.+.|-|+|. . .+...|++.| +.|..+. |+.+..+.+ ++|+|.|.|.+--. -..|++
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G--h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG--HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB--EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC--CceeEEEEecCChHHHHHHHH
Confidence 5677888886 2 3447899977 8897754 555555443 26899999976443 344444
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.78 E-value=92 Score=21.71 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCCcCCCHHHHHHHHhc-CCc-EEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013087 300 NLPKDITQDRLKELFAH-HGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (449)
Q Consensus 300 nLp~~~t~e~L~~~F~~-~G~-v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~ 354 (449)
-.....+..+|++.++. |+. |..|..+.-+.+. --|||++..-.+|......
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHh
Confidence 35668899999988886 664 7777766554332 3699999888777766554
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.87 E-value=49 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
.|++|+|.+-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887776667779999999964
No 412
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.63 E-value=12 Score=34.45 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHh
Q 013087 304 DITQDRLKELFA 315 (449)
Q Consensus 304 ~~t~e~L~~~F~ 315 (449)
.+++++|+.+..
T Consensus 228 ~vt~~~l~~i~~ 239 (358)
T 2pk2_A 228 TVTLELLDELTH 239 (358)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 456766666554
No 413
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=28.46 E-value=13 Score=37.02 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=4.1
Q ss_pred HHHHHHhcC
Q 013087 135 DLRHFCKSI 143 (449)
Q Consensus 135 ~l~~~f~~~ 143 (449)
.|..+|..+
T Consensus 385 ~Ll~~F~~~ 393 (649)
T 3tj1_A 385 TLTTLFKTH 393 (649)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 344455443
No 414
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.37 E-value=13 Score=29.18 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCcccEEEEEeC
Q 013087 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343 (449)
Q Consensus 308 e~L~~~F~~~G~v~~v~i~~~~~~~~~kg~afV~F~ 343 (449)
+++-++|...|.|...... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 3455667777777766442 789999875
No 415
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=27.26 E-value=13 Score=37.55 Aligned_cols=17 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred cCCCCCCCHHHHHHHHh
Q 013087 125 GGIPHDASDDDLRHFCK 141 (449)
Q Consensus 125 ~nLp~~~t~~~l~~~f~ 141 (449)
+.+=..+-++.|.+.|.
T Consensus 749 ~~~i~~~Veekv~~~i~ 765 (956)
T 4aco_A 749 NALLDKILEEKVTRIIE 765 (956)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 416
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.23 E-value=60 Score=23.39 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
.|++|+|.+-...++-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887776667779999999964
No 417
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.97 E-value=62 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 319 KITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 319 ~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
.|++|+|.+-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47888887776667779999999964
No 418
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=25.13 E-value=82 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=16.4
Q ss_pred EEEEecCCCCCCcccEEEEEecC
Q 013087 148 EVRIMKGKDSGEAKGYAFVTFRT 170 (449)
Q Consensus 148 ~v~i~~~~~tg~~~g~afV~F~~ 170 (449)
.++++.++. ..+.|+++|.|.+
T Consensus 21 ~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCceEEEEEec
Confidence 456666655 5688999999976
No 419
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.40 E-value=55 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHH----hcCCcEEEEEecCCCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 013087 309 RLKELF----AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (449)
Q Consensus 309 ~L~~~F----~~~G~v~~v~i~~~~~~~~~kg~afV~F~~~~~A~~A~~~l 355 (449)
+|..+| ..+|.|+.+.|...+.... +.+++|.|.+.++|..|+..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~-~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEY-QKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSE-EEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCcc-ccccccccCCchhhhhhHHHH
No 420
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=57 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=13.1
Q ss_pred CcEEEEEecCCCCCCCcccEEEEEeCC
Q 013087 318 GKITKVVIPPAKPGQERSRYGFVHFAE 344 (449)
Q Consensus 318 G~v~~v~i~~~~~~~~~kg~afV~F~~ 344 (449)
|+|..|... +..|||.|.+
T Consensus 28 GtV~kV~~~--------~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA--------REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred eEEEEEecC--------CcEEEEEEcc
Confidence 566666543 5689999965
Done!