BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013089
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
 pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
 pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
          Length = 299

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 336 NNVTQVFSFDYKP-----LVPY-ESINDTGMF-YGMKFYNDLLMEAGPQGN--VQSELL 385
           N   QV SF+Y P     +VP+   INDTG++ Y +  Y D +   G Q    VQS +L
Sbjct: 160 NGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLIL 218


>pdb|1I3S|A Chain A, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
           Baculovirus P35 After Caspase Cleavage
 pdb|1I3S|B Chain B, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
           Baculovirus P35 After Caspase Cleavage
 pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
           Baculovirus P35 After Caspase Cleavage
          Length = 298

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 336 NNVTQVFSFDYKP-----LVPY-ESINDTGMF-YGMKFYNDLLMEAGPQGN--VQSELL 385
           N   QV SF+Y P     +VP+   INDTG++ Y +  Y D +   G Q    VQS +L
Sbjct: 160 NGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLIL 218


>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
          Length = 299

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 336 NNVTQVFSFDYKP-----LVPY-ESINDTGMF-YGMKFYNDLLMEAGPQGN--VQSELL 385
           N   QV SF+Y P     +VP+   INDTG++ Y +  Y D +   G Q    VQS +L
Sbjct: 161 NGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLIL 219


>pdb|2FUN|A Chain A, Alternative P35-Caspase-8 Complex
 pdb|2FUN|C Chain C, Alternative P35-Caspase-8 Complex
          Length = 298

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 336 NNVTQVFSFDYKP-----LVPY-ESINDTGMF-YGMKFYNDLLMEAGPQGN--VQSELL 385
           N   QV SF+Y P     +VP+   INDTG++ Y +  Y D +   G Q    VQS +L
Sbjct: 160 NGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLIL 218


>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
           Baculovirus P35 After Caspase Cleavage
          Length = 298

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 336 NNVTQVFSFDYKP-----LVPY-ESINDTGMF-YGMKFYNDLLMEAGPQGN--VQSELL 385
           N   QV SF+Y P     +VP+   INDTG++ Y +  Y D +   G Q    VQS +L
Sbjct: 160 NGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLIL 218


>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
           Kiaa1526 Protein
          Length = 103

 Score = 28.5 bits (62), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 157 SAFQVSVGLAGTSNKTVKLPKNFTLQGPGPGYTCGPAKV 195
           SA  + + + G +N    LP+  T+Q  G  + CG  KV
Sbjct: 15  SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKV 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,690,409
Number of Sequences: 62578
Number of extensions: 632041
Number of successful extensions: 1250
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 7
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)