Query 013089
Match_columns 449
No_of_seqs 119 out of 152
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndz_E Endoglucanase D; cellot 95.6 0.037 1.3E-06 47.0 7.7 56 46-104 3-58 (107)
2 1exg_A EXO-1,4-beta-D-glycanas 93.9 0.13 4.6E-06 43.4 6.8 59 42-104 4-62 (110)
3 3icg_A Endoglucanase D; cellul 93.8 0.13 4.3E-06 52.7 7.9 60 42-104 379-438 (515)
4 1e5b_A Xylanase D; hydrolase, 93.2 0.03 1E-06 45.9 1.7 51 47-105 4-54 (87)
5 2cwr_A Chitinase; chitin-bindi 91.8 0.48 1.6E-05 39.9 7.2 51 48-105 12-62 (103)
6 1heh_C Endo-1,4-beta-xylanase 87.5 0.18 6.2E-06 41.4 1.4 54 44-105 2-55 (88)
7 3ndz_E Endoglucanase D; cellot 63.4 56 0.0019 27.4 9.7 103 294-413 3-105 (107)
8 1exg_A EXO-1,4-beta-D-glycanas 50.1 92 0.0031 25.9 8.8 99 296-413 10-108 (110)
9 3icg_A Endoglucanase D; cellul 35.2 1.7E+02 0.0057 29.8 9.7 106 294-416 383-488 (515)
10 1dp4_A Atrial natriuretic pept 33.9 24 0.00081 33.5 3.0 64 41-116 367-432 (435)
No 1
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=95.57 E-value=0.037 Score=46.97 Aligned_cols=56 Identities=29% Similarity=0.432 Sum_probs=46.5
Q ss_pred EEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecC
Q 013089 46 VTIKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQG 104 (449)
Q Consensus 46 iTI~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 104 (449)
.+++|.|.+--.+||.|.|||.|.-- .-|+ ||+|+|++..++-|-++..|..+..|
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~p~g~~it~~Wna~~s~sG 58 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASG 58 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEET
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCCC-Cccc--CcEEEEEcCCCCEEecccceEEEecC
Confidence 47899998888899999999999742 2354 99999999999999999998766533
No 2
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=93.88 E-value=0.13 Score=43.35 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=47.7
Q ss_pred CCCCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecC
Q 013089 42 PTGNVTIKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQG 104 (449)
Q Consensus 42 p~GniTI~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 104 (449)
+.|-.+++|. .+--.+||.|.|||.|.-- .-|+ ||+|.|+...++-|-++..|..+..|
T Consensus 4 ~~~~c~v~y~-~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~~~g~~i~~~Wna~~s~sG 62 (110)
T 1exg_A 4 GPAGCQVLWG-VNQWNTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSG 62 (110)
T ss_dssp CCCCEEEECC-EEESSSEEEEEEEEEECSS-SCEE--SEEEEEECSSSCEEEEEESSEEEEET
T ss_pred CCCcEEEEEE-eCCCCCCEEEEEEEEeCCC-Cccc--ceEEEEEcCCCcEEecccceEEEccC
Confidence 3477899998 6777899999999999642 2354 99999999999888888888776544
No 3
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=93.85 E-value=0.13 Score=52.70 Aligned_cols=60 Identities=28% Similarity=0.446 Sum_probs=50.2
Q ss_pred CCCCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecC
Q 013089 42 PTGNVTIKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQG 104 (449)
Q Consensus 42 p~GniTI~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 104 (449)
+.|-.+++|.|.+--++||.|.|||.|.-- .-|+ ||+|+|++..++-|-+...|..+..|
T Consensus 379 ~~~~~~~~~~~~~~W~~g~~~~v~v~n~~~-~~~~--~W~~~~~~~~~~~i~~~wn~~~~~~g 438 (515)
T 3icg_A 379 PQSAVEVTYAITNSWGSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASG 438 (515)
T ss_dssp --CCEEEEEEEEEECSSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEET
T ss_pred CCCceEEEEEEecCCCCccEEEEEEEeCCC-CCcC--CeEEEEEeCCCCEeeccccceEEecC
Confidence 457799999999999999999999999753 3454 99999999999999999999877644
No 4
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A
Probab=93.21 E-value=0.03 Score=45.91 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=41.5
Q ss_pred EEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecCC
Q 013089 47 TIKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQGD 105 (449)
Q Consensus 47 TI~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 105 (449)
+.+|.|.+.-++||.|.|+|.| + .||+|.|++..++=|-++..|..+..|.
T Consensus 4 ta~y~v~~~W~~Gf~~~vtVtn------~--~gWtv~~~~~~g~~i~~~Wn~~~s~sg~ 54 (87)
T 1e5b_A 4 SVTATRAEEWSDGFNVTYSVSG------S--SAWTVNLALNGSQTIQASWNANVTGSGS 54 (87)
T ss_dssp CCBCCBCCCCSSEEEEEEBCCS------C--SSCCCEEECCTTCCEEEEESBCCEESSS
T ss_pred EEEEEECccCCCCEEEEEEEEc------c--CceEEEEEcCCCCEEeeeeceeEecCCC
Confidence 4567776667799999999998 3 5999999999998888888887765443
No 5
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=91.75 E-value=0.48 Score=39.95 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=40.9
Q ss_pred EEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecCC
Q 013089 48 IKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQGD 105 (449)
Q Consensus 48 I~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 105 (449)
.+|.+ +-=.+||.|.|||.|-- + .||+|.|++..++=|-++..|..+..|.
T Consensus 12 c~y~~-n~W~~Gf~~~vtVtN~g----~--~gWtv~~~~~~g~~it~~Wna~~s~sg~ 62 (103)
T 2cwr_A 12 LEVKV-NDWGSGAEYDVTLNLDG----Q--YDWTVKVKLAPGATVGSFWSANKQEGNG 62 (103)
T ss_dssp EEEEE-EECSSEEEEEEEEEESS----C--CCCEEEEEECTTCEEEEEESEEEEEETT
T ss_pred EEEEE-CCCCCceEEEEEEeCCC----C--CcEEEEEECCCCcEEecccceEEecCCC
Confidence 36764 44568999999999983 3 4999999999999899999888776443
No 6
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C
Probab=87.51 E-value=0.18 Score=41.42 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeEEEEecCCeeEEEeccceeeecCC
Q 013089 44 GNVTIKWDVMSWTPDGYVAAVTINNFQMYRHIGAPGWTLGWQWAKKEVIWTMVGAQTTEQGD 105 (449)
Q Consensus 44 GniTI~wDV~~~~~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 105 (449)
|--+.+|.|.+-=.+||.|.|||. + + .||+|.|++..++=|-++..|..+..|.
T Consensus 2 g~Ctaty~~~n~W~~Gf~a~vtVt-----g-~--~gWtv~~~~~~gq~vt~~Wna~~s~sg~ 55 (88)
T 1heh_C 2 GSCSVSAVRGEEWADRFNVTYSVS-----G-S--SSWVVTLGLNGGQSVQSSWNAALTGSSG 55 (88)
T ss_dssp CCCCCCCCCCSBCSSEEEEEEECS-----S-C--CSCCCEEECCSSCCCCCEESSEEECSSS
T ss_pred CceEEEEEEcccCCCceEEEEEEe-----c-c--ccEEEEEECCCCCEEEccccccCccCCC
Confidence 344667777666679999999998 2 2 5999999999999898888887765443
No 7
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=63.38 E-value=56 Score=27.41 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=67.0
Q ss_pred ceEeEEEeecCccceEEEEEEEecCCccCccceeeEeecCCCCCcceEEeeecccCCCCcccCceEEEEecchhhHHHhh
Q 013089 294 IRVHWHVKVNYKEYWRVKIAITNFNYRMNYTQWTLVAQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLME 373 (449)
Q Consensus 294 V~IhWHVk~nYk~~WrvkiTi~N~~~~~nys~W~lvVqhpn~~~~tqvySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~e 373 (449)
.++-..|..+...|..+.|||+|=. ......|.+-+..|.=..++++..=..+. .-++..+-.. .||--|..
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~p~g~~it~~Wna~~s~------sG~~vt~~n~-~wN~~la~ 74 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIAA 74 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEECT
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCC-CCcccCcEEEEEcCCCCEEecccceEEEe------cCCEEEEEEC-CcccccCC
Confidence 4577888899999999999999976 36788999999999755566655443331 1235555544 34433321
Q ss_pred cCCCCceeEEEEEeecCCCcccccCCCCceeeEEeCCccC
Q 013089 374 AGPQGNVQSELLLQKNKDTFTFKQGWAFPRKVYFNGDECM 413 (449)
Q Consensus 374 ~g~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~ 413 (449)
. |- -.++-|.-.. .+..+-|....+||..|.
T Consensus 75 ~---G~-s~~fGf~g~~-----~G~~~~P~~~~lnG~~C~ 105 (107)
T 3ndz_E 75 N---GG-TQSFGFNINY-----SGVLSKPTGFTVNGTECT 105 (107)
T ss_dssp T---TE-EEEEEEEEEE-----CSSCCCCSCCEETTEECE
T ss_pred C---Cc-cEEEEEEEeC-----CCCCCCCcEEEECCCccc
Confidence 1 32 2345444221 233577999999999995
No 8
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=50.08 E-value=92 Score=25.89 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=62.6
Q ss_pred EeEEEeecCccceEEEEEEEecCCccCccceeeEeecCCCCCcceEEeeecccCCCCcccCceEEEEecchhhHHHhhcC
Q 013089 296 VHWHVKVNYKEYWRVKIAITNFNYRMNYTQWTLVAQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAG 375 (449)
Q Consensus 296 IhWHVk~nYk~~WrvkiTi~N~~~~~nys~W~lvVqhpn~~~~tqvySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~e~g 375 (449)
+... ..+...+..++|||+|=. ......|.+-+..|.=..+++. .|.+.-. ..++..+-. ..||--|.-
T Consensus 10 v~y~-~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~~~g~~i~~~--Wna~~s~----sG~~vt~~n-~~wN~~la~-- 78 (110)
T 1exg_A 10 VLWG-VNQWNTGFTANVTVKNTS-SAPVDGWTLTFSFPSGQQVTQA--WSSTVTQ----SGSAVTVRN-APWNGSIPA-- 78 (110)
T ss_dssp EECC-EEESSSEEEEEEEEEECS-SSCEESEEEEEECSSSCEEEEE--ESSEEEE----ETTEEEEEE-CSGGGEECS--
T ss_pred EEEE-eCCCCCCEEEEEEEEeCC-CCcccceEEEEEcCCCcEEecc--cceEEEc----cCCEEEEec-ccccceeCC--
Confidence 4444 578899999999999965 4678899999999874445554 4454211 123555555 445654432
Q ss_pred CCCceeEEEEEeecCCCcccccCCCCceeeEEeCCccC
Q 013089 376 PQGNVQSELLLQKNKDTFTFKQGWAFPRKVYFNGDECM 413 (449)
Q Consensus 376 ~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~ 413 (449)
|- ..++-|.-.. .+...-|....+||..|.
T Consensus 79 --G~-s~~fGf~~~~-----~g~~~~Pt~~~lnG~~C~ 108 (110)
T 1exg_A 79 --GG-TAQFGFNGSH-----TGTNAAPTAFSLNGTPCT 108 (110)
T ss_dssp --SE-EEEEEEEEEC-----SSSCCCCSCEEETTEEEE
T ss_pred --Cc-EEEEEEEEeC-----CCCCCCCceEEEcCcccC
Confidence 22 2455555321 123456899999999994
No 9
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=35.16 E-value=1.7e+02 Score=29.76 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=68.1
Q ss_pred ceEeEEEeecCccceEEEEEEEecCCccCccceeeEeecCCCCCcceEEeeecccCCCCcccCceEEEEecchhhHHHhh
Q 013089 294 IRVHWHVKVNYKEYWRVKIAITNFNYRMNYTQWTLVAQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLME 373 (449)
Q Consensus 294 V~IhWHVk~nYk~~WrvkiTi~N~~~~~nys~W~lvVqhpn~~~~tqvySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~e 373 (449)
.++-..|..+..+|..+.|||+|=. ......|.+-+..|.-..++++.+=+.+. ..++..+-.. .||--|..
T Consensus 383 ~~~~~~~~~~W~~g~~~~v~v~n~~-~~~~~~W~~~~~~~~~~~i~~~wn~~~~~------~g~~~~~~~~-~~n~~~~~ 454 (515)
T 3icg_A 383 VEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIAA 454 (515)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEECT
T ss_pred eEEEEEEecCCCCccEEEEEEEeCC-CCCcCCeEEEEEeCCCCEeeccccceEEe------cCCeEEEecC-ccccccCC
Confidence 4477888999999999999999976 36788999999999755666665443331 1245555554 33432221
Q ss_pred cCCCCceeEEEEEeecCCCcccccCCCCceeeEEeCCccCCCC
Q 013089 374 AGPQGNVQSELLLQKNKDTFTFKQGWAFPRKVYFNGDECMLPP 416 (449)
Q Consensus 374 ~g~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~mP~ 416 (449)
.| .-.++=|.-.. .+..+=|....+||..|.-..
T Consensus 455 ---~g-~s~~~gf~~~~-----~g~~~~p~~~~lng~~c~~~~ 488 (515)
T 3icg_A 455 ---NG-GTQSFGFNINY-----SGVLSKPTGFTVNGTECTVKK 488 (515)
T ss_dssp ---TT-EEEEEEEEEEE-----CSSCCCCSCCEETTEECEEC-
T ss_pred ---CC-ceEEEEEEEeC-----CCCCCCCceEEECCcccCCCC
Confidence 02 12234343221 234567889999999997643
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=33.87 E-value=24 Score=33.49 Aligned_cols=64 Identities=16% Similarity=0.387 Sum_probs=33.2
Q ss_pred CCCCCEEEEEEEEEee-CCCeEEEEEEecCccccccCCCCCeEEEEe-cCCeeEEEeccceeeecCCcccccCCCCcc
Q 013089 41 DPTGNVTIKWDVMSWT-PDGYVAAVTINNFQMYRHIGAPGWTLGWQW-AKKEVIWTMVGAQTTEQGDCSKFKANIPHC 116 (449)
Q Consensus 41 dp~GniTI~wDV~~~~-~d~Y~A~VTi~N~q~yr~i~~pgW~L~W~W-~~~EvIwsM~GA~~teqgdCs~f~~~~ph~ 116 (449)
|++|+..-.|+|+++. .+|-. |.+..+.+.. + ...+ .+..++|. -|--+.....| .|.++.++|
T Consensus 367 d~~g~~~~~~~i~~~~~~~g~~--~~vg~~~~~~----~----~l~~~~~~~i~W~-~~~~P~~~p~C-gf~~~~~~C 432 (435)
T 1dp4_A 367 DRNGDRDTDFSLWDMDPETGAF--RVVLNYNGTS----Q----ELMAVSEHKLYWP-LGYPPPDVPKC-GFDNEDPAC 432 (435)
T ss_dssp CTTSBBCCCEEEEEECTTTCCE--EEEEEECTTT----C----CEEESTTCCCCCT-TSSCCCSSCTT-CC-------
T ss_pred CCCCCccceeEEEEecCCCCcE--EEEEEecCCC----c----eEEEcCCceeeCC-CCCCCCCCCCC-CcCCCcCCC
Confidence 6778877789999984 45633 3333333221 1 2344 56778884 34445556777 565554443
Done!