BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013090
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
           Transcriptional Repressor
 pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
           Transcriptional Repressor
          Length = 192

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172
           H  I   G+DRPG+ +EV  ++T   CN++ + +         LM ++
Sbjct: 6   HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53


>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
 pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
          Length = 429

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV-ATKSGKAVNTFYVG-GASGYPVDAK 394
            + L     + VG L+ V R+F EN + +T  E   ++  K    F+        PV   
Sbjct: 34  AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGS 93

Query: 395 IIDSIRQSIGQTILKVKGNPE 415
           II S+R  IG T+ ++  + E
Sbjct: 94  IIKSLRNDIGATVHELSRDKE 114


>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
           Resolution
 pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
           Resolution
 pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
           Resolution
 pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
           Resolution
          Length = 287

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISD 182
           + L   D PG++SEVS  L +   N+V AE +     +    +V+ E     ++D
Sbjct: 10  LSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEIPVAGVND 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,561,868
Number of Sequences: 62578
Number of extensions: 495378
Number of successful extensions: 1218
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 15
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)