BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013090
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PPRV+IDN A TVI V+ ++ G+L ++ + LT+L L ++ A IS+ G +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 84 TDEDGNKITDEGILDYIRKCL 104
D G K+T E L IR+ L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 181
S HT IE+ G DRPGLL +++ LT+L + SA++ T+ +A + V D G ++
Sbjct: 854 STTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKD-VFGLKVT 912
Query: 182 DPERLSVIKELLCNVL 197
+L+ I+E L + L
Sbjct: 913 HENKLAQIRERLLHAL 928
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPE 184
T + + +D GL S ++ L ++V A ++T N A + V D GGA +
Sbjct: 745 TEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAFESGD 804
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
+L+ + ++ VL G K T+ R H
Sbjct: 805 KLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVP-------------------- 844
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + +DRP L++D LT++ + A I G +A ++
Sbjct: 845 --PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFY 902
Query: 305 IRHIDGSPVKSDAE----RERVIQCL 326
++ + G V + + RER++ L
Sbjct: 903 VKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391
+E+ DR GLL ++TR +L ++ A+++T KA++ FYV G V
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKV 911
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 12 DDEYEKLIRRMN----PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTK 67
D + RRM PPRVVIDN A TVI V+ ++ G+L +V L+ +L ++
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898
Query: 68 AYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCL 104
A+I++ G +DVF V D G KITD L +R+ L
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL 935
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 30/190 (15%)
Query: 35 KNATVIRVDSANKHGILLEVVQVL--TDLNLIVTKAYISSDGCWFMDVFNVTDEDG---- 88
+ T + V A+ G+ ++ L + +++ + + SDG +D F V D +G
Sbjct: 753 RGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGM-ALDTFWVQDGEGCSFE 811
Query: 89 --------NKITDE---GILDYIRKCLGPEACFASS--MRSVGVKQ--------SMDHTA 127
N + ++ G LD IRK + + ++S MR++ V S HT
Sbjct: 812 EPHQLGRLNHLVEQALSGRLD-IRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTV 870
Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLS 187
IE+ G DRPGLL +V++ L+ + SA + T+ RA + V D G I+DP RL+
Sbjct: 871 IEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRD-LLGMKITDPVRLA 929
Query: 188 VIKELLCNVL 197
++E L L
Sbjct: 930 RLRETLLASL 939
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T + + +D PGL S+++ L ++V A + T + A V D E G + +P
Sbjct: 756 TELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGE-GCSFEEPH 814
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTH--TERRLHQMMFADRDYERTGTDDDSLD 242
+L + L+ L G L + +D +H T RR+ +
Sbjct: 815 QLGRLNHLVEQALSGR----LDIRKGIEDASHHSTSRRMRAIHVP--------------- 855
Query: 243 EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQE 302
P V + N ++V+ + +DRP L+ D L+ + A+I G A
Sbjct: 856 ----PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDV 911
Query: 303 YFIRHIDG----SPVKSDAERERVIQCLKAA 329
+++R + G PV+ RE ++ L +A
Sbjct: 912 FYVRDLLGMKITDPVRLARLRETLLASLTSA 942
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLL +VT SL ++ A + T +AV+ FYV G KI D +
Sbjct: 871 IEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGM----KITDPV 926
Query: 400 R 400
R
Sbjct: 927 R 927
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PPRV++DN+A K TVI ++ ++ G L V + LTD+ + ++ A +S+ G +D F V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 84 TDEDGNKITDEGILDYIRKCL 104
D G KI L IR+ L
Sbjct: 885 KDVFGMKIVHRAKLAQIREAL 905
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 134 DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELL 193
D PGL S+++ + N++ A++ T + A + G AI ER++ + + +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 194 CNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVN 253
+VL G L K Q ER H + P V V N
Sbjct: 795 RDVLTGDLP--LEKALRRQPPRLPERTRHLTV--------------------PPRVIVDN 832
Query: 254 CYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPV 313
K ++V+ I +DRP ++ LTD+ + A + G ++++ + G +
Sbjct: 833 QASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKI 892
Query: 314 KSDAERERVIQCLKAAI----ERRVSEG 337
A+ ++ + L+AAI R+V EG
Sbjct: 893 VHRAKLAQIREALEAAITQTVPRKVEEG 920
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 58 LTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDE----GILDYIRKCLGPEACFASS 113
L +N++ K SDG +D+F V +G+ I E + +R L + +
Sbjct: 749 LAGVNILDAKITTMSDGG-ALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA 807
Query: 114 MRS-------------------VGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVV 154
+R V + S HT IE+ G DRPG L V+ LT + +
Sbjct: 808 LRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 155 SAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELL 193
SA V T+ R V D G I +L+ I+E L
Sbjct: 868 SARVSTYGERVVDSFYVKD-VFGMKIVHRAKLAQIREAL 905
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD-----AK 394
+E+ DR G L VTR + ++ ++ A V+T + V++FYV G + A+
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQ 900
Query: 395 IIDSIRQSIGQTI 407
I +++ +I QT+
Sbjct: 901 IREALEAAITQTV 913
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV+ DN+A TVI V++ ++ +L + + L + +IV A+I++ G D F VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 85 DEDGNKITDEGILDYIRKCL 104
D G KITDE +D IR+ L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 26/195 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQ--VLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKIT 92
+ AT++ V +A+ G+ + L N+I + + + +G W +D + V D G
Sbjct: 724 RGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNG-WAIDNYLVQDPVGQPFA 782
Query: 93 DEGILDYIRKCLGPEAC----FASSMRSVGVKQ------------------SMDHTAIEL 130
+E L I + + + +KQ S T IE+
Sbjct: 783 EERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEV 842
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
DR LL+ + L + V SA + + RAA VTD TG I+D R+ I+
Sbjct: 843 NARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDL-TGAKITDESRMDTIR 901
Query: 191 ELLCNVLKGSNKSGL 205
+ L + + ++ L
Sbjct: 902 QALLDAASDARQAEL 916
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T + + +D PGL ++ + N++ A + T A + + G ++ +
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 186 LSVIKELLCNVL--KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDE 243
L+ I++ + + + +G LAK + Q R G D
Sbjct: 787 LARIEQAIADAIANRGELVPKLAKRPLKQT-------------------RAGAFD----- 822
Query: 244 KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEY 303
RP V N ++V+ + ++DR L+ L + Q +V A+I A G A +
Sbjct: 823 -VRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTF 881
Query: 304 FIRHIDGSPVKSDAERERVIQCL 326
++ + G+ + ++ + + Q L
Sbjct: 882 YVTDLTGAKITDESRMDTIRQAL 904
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDS 398
+E+ DR LL+ + R EN + V A + +A +TFYV +G + D +D+
Sbjct: 840 IEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDT 899
Query: 399 IRQSI 403
IRQ++
Sbjct: 900 IRQAL 904
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
+T IE++G DRPGLL E++ ++ L N+ SA V T RA + VTD G I+ P
Sbjct: 848 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQINAPT 906
Query: 185 RLSVIKELLCNVLKG 199
R S IK L +V+ G
Sbjct: 907 RQSAIKSALTHVMAG 921
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I+N+ TVI V ++ G+L E+ ++ LNL + A++++ G DVF VT
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 85 DEDGNKI 91
D G +I
Sbjct: 896 DLLGAQI 902
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 38/207 (18%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT--- 172
+VG + T + + +D P LLS ++ N+V A+++T T AL ++
Sbjct: 729 NVGFDEVRGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYT-TTDGRALDTISISR 787
Query: 173 ----DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFAD 228
DE+ G R + I E++ +VL+G K + + V R F
Sbjct: 788 EYDRDEDEG------RRATRIGEMIEDVLEG-------KLRLPEVVARRTVRSKARPFV- 833
Query: 229 RDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVF 288
P V + N + Y+V+ ++ DRP L+++ ++ + +
Sbjct: 834 ----------------IEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIA 877
Query: 289 HANIDAEGPEAYQEYFIRHIDGSPVKS 315
A++ G A +++ + G+ + +
Sbjct: 878 SAHVATFGERARDVFYVTDLLGAQINA 904
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
HT IE++G DRPGLL +++ ++ L N+ SA V T RA + VTD G I+ P
Sbjct: 847 HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 905
Query: 185 RLSVIKELLCNVLKGSNKS 203
R + IK L ++L N +
Sbjct: 906 RQAAIKRALVHLLASGNTA 924
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 20 RRMNP----PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGC 75
+R+ P P+V I+N+ T+I V ++ G+L ++ ++ LNL + A++++ G
Sbjct: 826 KRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGE 885
Query: 76 WFMDVFNVTDEDGNKIT 92
DVF VTD G +IT
Sbjct: 886 RARDVFYVTDLLGARIT 902
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
HT IE++G DRPGLL +++A ++ L N+ SA V T RA + VTD G I+ P
Sbjct: 849 HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 907
Query: 185 RLSVIKELLCNVL 197
R + IK L ++L
Sbjct: 908 RQAAIKRALIHLL 920
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 21 RMNP----PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCW 76
R+ P P+V+++N+ TVI V ++ G+L ++ ++ LNL + A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 77 FMDVFNVTDEDGNKIT 92
DVF VTD G +IT
Sbjct: 889 ARDVFYVTDLLGARIT 904
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 41/222 (18%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT--- 172
+VG ++ T + + +D P LLS ++ N+V A+++T T AL +
Sbjct: 729 NVGFDEARGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYT-TTDGQALDTIAISR 787
Query: 173 ----DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFAD 228
DE+ G R + I E++ V+ G L +V + RL +
Sbjct: 788 EYDRDEDEG------RRAARIGEIIEQVIDGR----LRLPDVVARRAAGKTRLRPFVV-- 835
Query: 229 RDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVF 288
P V V N + ++V+ ++ DRP L+F ++ + +
Sbjct: 836 -----------------EPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIA 878
Query: 289 HANIDAEGPEAYQEYFIRHIDG----SPVKSDAERERVIQCL 326
A++ G A +++ + G +P + A + +I L
Sbjct: 879 SAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRALIHLL 920
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 16 EKLIRRMNP--PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI-SS 72
E ++R NP P V++ +A + T + V + ++H + VV L N V A I SS
Sbjct: 668 EHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSS 727
Query: 73 DGCWFMDVFNVTDEDGNKI---TDEGILDYIRKCLGPEACFASSMRSVGVK--------- 120
+ +D F V D+ G I + ++ ++ L R K
Sbjct: 728 KDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTK 787
Query: 121 ------QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
+S T +EL D PGLL+ A + N+ A++ T RA L +T
Sbjct: 788 VDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS- 846
Query: 175 ETGGAISDPERLSVIKELLCNV 196
E GG +S+ + L + ++L+ N+
Sbjct: 847 ENGGRLSEEQELQLREKLIHNI 868
>sp|Q7MIF8|GLND_VIBVY [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
YJ016) GN=glnD PE=3 SV=1
Length = 873
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 16 EKLIRRMNP--PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI-SS 72
E ++R NP P V++ +A + T + V + ++H + VV L N V A I SS
Sbjct: 668 EHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSS 727
Query: 73 DGCWFMDVFNVTDEDGNKI---TDEGILDYIRKCLGPEACFASSMRSVGVK--------- 120
+ +D F V D+ G I + ++ ++ L R K
Sbjct: 728 KDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLTDGRPTKVKTRRTPYKLQHFKVKTK 787
Query: 121 ------QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 174
+S T +EL D PGLL+ A + N+ A++ T RA L +T
Sbjct: 788 VDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS- 846
Query: 175 ETGGAISDPERLSVIKELLCNV 196
E GG +S+ + L + ++L+ N+
Sbjct: 847 ENGGRLSEEQELQLREKLIHNI 868
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 175
S+ + S +T IE++G DRPGLL E++ ++ L N+ SA V T RA + VTD
Sbjct: 840 SINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-L 898
Query: 176 TGGAISDPERLSVIKELLCNVLKGSNKSG 204
G I+ P R + IK L ++L + +
Sbjct: 899 LGAQINAPTRQAAIKSALLHLLASEDAAA 927
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I+N+ + TVI V ++ G+L E+ ++ LNL + A++++ G DVF VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 85 DEDGNKI 91
D G +I
Sbjct: 897 DLLGAQI 903
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT-- 172
+VG + T + + D P LLS ++ N+V A+++T + RA + ++
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 173 ---DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADR 229
DE+ G R + I E + VL+G ++ D
Sbjct: 789 YERDEDEG------RRATRIGETIEQVLEG-----------------------KLRLPDA 819
Query: 230 DYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH 289
RT P V++ N + + Y+V+ ++ DRP L+++ ++ + +
Sbjct: 820 VARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIAS 879
Query: 290 ANIDAEGPEAYQEYFIRHIDGSPVKS 315
A++ G A +++ + G+ + +
Sbjct: 880 AHVATFGERARDVFYVTDLLGAQINA 905
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 175
S+ + S +T IE++G DRPGLL E++ ++ L N+ SA V T RA + VTD
Sbjct: 840 SINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-L 898
Query: 176 TGGAISDPERLSVIKELLCNVL 197
G I+ P R + IK L ++L
Sbjct: 899 LGAQINAPTRQAAIKSALLHLL 920
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I+N+ + TVI V ++ G+L E+ ++ LNL + A++++ G DVF VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 85 DEDGNKI 91
D G +I
Sbjct: 897 DLLGAQI 903
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT-- 172
+VG + T + + D P LLS ++ N+V A+++T + RA + ++
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 173 ---DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADR 229
DE+ G R + I E + VL+G ++ D
Sbjct: 789 YERDEDEG------RRATRIGETIEQVLEG-----------------------KLRLPDA 819
Query: 230 DYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH 289
RT P V++ N + + Y+V+ ++ DRP L+++ ++ + +
Sbjct: 820 VARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIAS 879
Query: 290 ANIDAEGPEAYQEYFIRHIDGSPVKS 315
A++ G A +++ + G+ + +
Sbjct: 880 AHVATFGERARDVFYVTDLLGAQINA 905
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I N TVI V+ ++ G+L EV VL+DL+L + A+I++ G +D F VT
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 85 DEDGNKITDE 94
D G+KIT E
Sbjct: 891 DLVGSKITSE 900
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 23/212 (10%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T I + D P LL+ ++ N+V A++ T + A + + E A + R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 186 LSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQ 245
+ I +L+ +VL G K D RT + S
Sbjct: 793 AASIGKLIEDVLSGRKK-----------------------LPDVIASRTRSKKRSRAFTV 829
Query: 246 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI 305
P V + N ++V+ + DR L+ + L+D+ + A+I G + +++
Sbjct: 830 TPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 306 RHIDGSPVKSDAERERVIQCLKAAIERRVSEG 337
+ GS + S+ + + LKA + V E
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS VT + + SL + A + T K ++TFYV G +KI
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVG----SKITSEN 901
Query: 400 RQ 401
RQ
Sbjct: 902 RQ 903
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP V+I N TVI V+ ++ G+L E+ VL+DL+L + A I++ G +D F V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 84 TDEDGNKITDEGILDYI 100
D G KI++E YI
Sbjct: 885 ADLVGQKISNENRRAYI 901
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ DRPGLLSE++AVL+ L ++ SA + T + V D G IS+ R
Sbjct: 839 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD-LVGQKISNENR 897
Query: 186 LSVIKELLCNVLKG 199
+ I L V+ G
Sbjct: 898 RAYITARLKAVMAG 911
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 247 PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 306
P+V + N ++V+ + DRP L+ + L+D+ + A I G + +++
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 307 HIDGSPVKSDAERERVIQCLKAAI 330
+ G + ++ R + LKA +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVM 909
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391
+E+ DR GLLS +T + + SL + A + T K ++TFYV G +
Sbjct: 841 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I N TVI V+ ++ G+L EV VL+DL+L + A+I++ G +D F VT
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 85 DEDGNKITDE 94
D G+KIT E
Sbjct: 891 DLVGSKITSE 900
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DR GLLSEV+AVL+ L ++ SA + T + VTD G I+ R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 186 LSVIKELLCNVLKG 199
I L VL G
Sbjct: 903 QMNIAARLKAVLAG 916
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T I + D P LL+ ++ N+V A++ T + A + + E A + R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 186 LSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQ 245
+ I +L+ +VL G + EV T ++R R + T
Sbjct: 793 AASIGKLIEDVLSGRKRL----PEVIASRTRVKKR-------SRAFTVT----------- 830
Query: 246 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI 305
P V + N ++V+ + DR L+ + L+D+ + A+I G + +++
Sbjct: 831 -PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 306 RHIDGSPVKSDAERERVIQCLKAAIERRVSEG 337
+ GS + S+ + + LKA + V E
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383
+E+ DR GLLS VT + + SL + A + T K ++TFYV
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
+T IE++G DRPGLL +++ ++ L N+ SA V T RA + VTD G I+ P
Sbjct: 847 YTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQITAPT 905
Query: 185 RLSVIKELLCNVLKGSNKS 203
R + IK L ++L + +
Sbjct: 906 RQAAIKRALVHLLANGDAA 924
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I+N TVI V ++ G+L ++ ++ LNL + A++++ G DVF VT
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 85 DEDGNKITDEGILDYIRKCL 104
D G +IT I++ L
Sbjct: 895 DLLGAQITAPTRQAAIKRAL 914
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 90/217 (41%), Gaps = 33/217 (15%)
Query: 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT-- 172
+VG ++ T + + D P LLS ++ N+V A+++T + RA + ++
Sbjct: 725 NVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISRE 784
Query: 173 ---DEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADR 229
DE+ G R + I E + VL+G K L + + + ++ +L +
Sbjct: 785 YDRDEDEG------RRATRIGETIEEVLEG--KLRLPEAVARRASSGSKAKLRAFVV--- 833
Query: 230 DYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH 289
P V + N + Y+V+ ++ DRP L++ ++ + +
Sbjct: 834 ----------------EPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIAS 877
Query: 290 ANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL 326
A++ G A +++ + G+ + + + + + L
Sbjct: 878 AHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRAL 914
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V++DNEA + +TV+ ++ G+L + + ++D L + A+I G +D F V
Sbjct: 831 PAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVV 890
Query: 85 DEDGNKITD 93
D DG K+TD
Sbjct: 891 DADGRKLTD 899
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 27/179 (15%)
Query: 134 DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS--DPERLSVIKE 191
DRP L +++ +T NV+ A V+T A + + +G DP L+ + E
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 192 LLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNV 251
L +G + V R+ +D RT + P V +
Sbjct: 801 TLACAARG------------EPVAREPRK-------PQDLGRTAAFAIT------PAVML 835
Query: 252 VNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 310
N + +VV + +DRP L+ T++D + A+ID G A +++ DG
Sbjct: 836 DNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVDADG 894
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173
T +E +G DRPGLL+ ++ ++ +++SA + + RA V D
Sbjct: 844 TVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVD 891
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
+ IE+ G DRPGLLSE++ L+ L ++ SA + T + VTD TG I P R
Sbjct: 847 SVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPAR 905
Query: 186 LSVIKELLCNVLKG--SNKSGLAKT 208
++ I+ L L+G + G AK
Sbjct: 906 IATIRNRLMATLEGIAPERGGKAKA 930
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PPR I N +VI V+ ++ G+L E+ L+DL+L + A+I++ G +D F V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 84 TDEDGNKITDEGILDYIRKCL 104
TD G KI + IR L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKI-IDS 398
+E+ DR GLLS +T + SL + A + T K ++TFYV +G +D+ I +
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIAT 908
Query: 399 IRQSIGQTI 407
IR + T+
Sbjct: 909 IRNRLMATL 917
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 23/206 (11%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T I + D P LLS ++ N+V A+++T A + E + R
Sbjct: 736 TEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILISREFDRDEDERRR 795
Query: 186 LSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQ 245
+ L+ +VL G KS L + M R + G +
Sbjct: 796 AERVGRLIEDVLSG--KSWLPE-----------------MIEKRTKPKRGAKVFKIP--- 833
Query: 246 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI 305
P + N +SV+ + DRP L+ + TL+D+ + A+I G + +++
Sbjct: 834 -PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 306 RHIDGSPVKSDAERERVIQCLKAAIE 331
+ G + S A + L A +E
Sbjct: 893 TDLTGQKIDSPARIATIRNRLMATLE 918
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V ++ LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 94 -----EGILDYIRKCL-GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ I D + + L PE R V + + H T +E+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDYPTIIQRRV--PRQLKHFNFPPQVTILNDAQRAVTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
T DRPGLL+ + + ++ +A++ T R + +TD + +SDP+ S ++
Sbjct: 820 TAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Query: 191 ELLCNVLKGSNKSGLAKTEVS 211
E + L+ S + T V+
Sbjct: 879 EAIVQQLQAGQASDASPTRVT 899
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDS 398
LE+ DR GLL+ + RIF E L++ A++AT + + F++ A P+ D ++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 399 IRQSIGQTILKVKGNPEDLKSASQDSPTRFLF 430
++++I Q + AS SPTR F
Sbjct: 877 LQEAIVQQL--------QAGQASDASPTRVTF 900
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+A + T++ + + ++ G+L + ++ + +L + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 84 TDEDGNKITD 93
TD D ++D
Sbjct: 861 TDADNQPLSD 870
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V ++ LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 94 -----EGILDYIRKCL-GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ I D + + L PE R V + + H T +E+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDYPTIIQRRV--PRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
T DRPGLL+ + + ++ +A++ T R + +TD + +SDP+ S ++
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Query: 191 ELLCNVLKGSNKSGLAKTEVS 211
E + L+ S ++T V+
Sbjct: 879 EAIVQQLQAGQGSDTSQTRVT 899
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+A + T++ + + ++ G+L + ++ + +L + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 84 TDEDGNKITDEGILDYIRKCL 104
TD D ++D + +++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 305 IRHIDGSP---VKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
++H D P + +DA+R I LE+ DR GLL+ + RIF E
Sbjct: 795 LKHFDFPPQVTILNDAQRPVTI----------------LEITAPDRPGLLARLGRIFLEF 838
Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTILKVKGN 413
L++ A++AT + + F++ A P+ D ++ ++++I Q + +G+
Sbjct: 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAGQGS 891
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V ++ LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 94 -----EGILDYIRKCL-GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ I D + + L PE R V + + H T +E+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDYPTIIQRRV--PRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
T DRPGLL+ + + ++ +A++ T R + +TD + +SDP+ S ++
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Query: 191 ELLCNVLKGSNKSGLAKTEVS 211
E + L+ S ++T V+
Sbjct: 879 EAIVQQLQAGQGSDTSQTRVT 899
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+A + T++ + + ++ G+L + ++ + +L + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 84 TDEDGNKITDEGILDYIRKCL 104
TD D ++D + +++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 305 IRHIDGSP---VKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
++H D P + +DA+R I LE+ DR GLL+ + RIF E
Sbjct: 795 LKHFDFPPQVTILNDAQRPVTI----------------LEITAPDRPGLLARLGRIFLEF 838
Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTILKVKGN 413
L++ A++AT + + F++ A P+ D ++ ++++I Q + +G+
Sbjct: 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAGQGS 891
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITDEGILDYIRKCL 104
D G+KI++ IR+ L
Sbjct: 894 DLVGHKISNATRQGNIRRKL 913
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSNKS 203
I+ L VL G N S
Sbjct: 906 QGNIRRKLLGVLSGENGS 923
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ 401
RQ
Sbjct: 905 RQ 906
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 24/195 (12%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T I + D P LLS ++ N+V A+++T A + E + R
Sbjct: 736 TEITVLAPDHPRLLSIITGACAAAGANIVDAQIFTTGDGRALDTILISREFDTDDDERRR 795
Query: 186 LSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQ 245
+ +++ +VL G + D +RT + K
Sbjct: 796 AERVGKVIEDVLSG-----------------------KAHLPDVLAKRTKPKRAAKAFKV 832
Query: 246 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI 305
P V + N ++V+ + DRP L+ + ++D+ + A+I G + +++
Sbjct: 833 EPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYV 892
Query: 306 RHIDGSPVKSDAERE 320
+ G + S+A R+
Sbjct: 893 TDLVGHKI-SNATRQ 906
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V ++ LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 94 -----EGILDYIRKCL-GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ I D + + L PE R V + + H T +E+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDYPTIIQRRV--PRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
T DRPGLL+ + + ++ +A++ T R + +TD + +SDP+ S ++
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Query: 191 ELLCNVLKGSNKSGLAKTEVS 211
E + L+ S + T V+
Sbjct: 879 EAIVQQLQAGQGSDTSPTRVT 899
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 305 IRHIDGSP---VKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
++H D P + +DA+R I LE+ DR GLL+ + RIF E
Sbjct: 795 LKHFDFPPQVTILNDAQRPVTI----------------LEITAPDRPGLLARLGRIFLEF 838
Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTILKVKGNPEDLKSA 420
L++ A++AT + + F++ A P+ D ++ ++++I Q + +G
Sbjct: 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAGQG-------- 890
Query: 421 SQDSPTRFLF 430
S SPTR F
Sbjct: 891 SDTSPTRVTF 900
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+A + T++ + + ++ G+L + ++ + +L + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 84 TDEDGNKITDEGILDYIRKCL 104
TD D ++D + +++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP V I N TVI V+ ++ G+L E+ VL+DL+L + A I++ G +D F V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 84 TDEDGNKIT 92
TD G KI+
Sbjct: 884 TDLVGQKIS 892
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LL+ ++ N+V A+++T + RA + V+ E T A +
Sbjct: 727 TEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDA-DELR 785
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + I ++ +VL G +RL +++ A R R + +
Sbjct: 786 RAATIGRMIEDVLSG------------------RKRLPEVI-ATRARNRKKSKAFVIP-- 824
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P+VN+ N ++V+ + DRP L+ + L+D+ + A I G + ++
Sbjct: 825 --PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFY 882
Query: 305 IRHIDGSPVKSDAERERVIQCLKAAI 330
+ + G + D++R + +KA +
Sbjct: 883 VTDLVGQKISGDSKRANITARMKAVM 908
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K ++TFYV G + DS
Sbjct: 840 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISG---DSK 896
Query: 400 RQSIGQTILKVKGNPED 416
R +I + V ED
Sbjct: 897 RANITARMKAVMAEEED 913
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 27/138 (19%)
Query: 308 IDGSPVKSDAERERVIQCLK------AAIERRVSEGLK--------------------LE 341
I +P + RE +I+ LK I+RRV LK LE
Sbjct: 759 IGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILE 818
Query: 342 LCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIR 400
L DR GLL+ + RIF E L++ A++AT + + F+V A+ P+ D ++ ++
Sbjct: 819 LTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQ 878
Query: 401 QSIGQTILKVKGNPEDLK 418
++I + + + P+ L+
Sbjct: 879 ETIVRRLSEPSAQPQSLQ 896
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V ++ LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGD 761
Query: 94 ---------EGILDYIRKCLGPEACFASSMRSVGVKQSMDH-----------------TA 127
EG+++ ++ P+ R V + + H T
Sbjct: 762 NPARIKQIREGLIEALKN---PDEYPTIIQRRV--PRQLKHFAFAPQVTIHNDAQRPVTI 816
Query: 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLS 187
+ELT DRPGLL+ + + ++ +A++ T R + VTD +SDPE +
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTD-ANNQPLSDPELCA 875
Query: 188 VIKELLCNVL 197
++E + L
Sbjct: 876 RLQETIVRRL 885
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 13 DEYEKLIRRMNP---------PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNL 63
DEY +I+R P P+V I N+A + T++ + + ++ G+L + ++ + +L
Sbjct: 781 DEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDL 840
Query: 64 IVTKAYISSDGCWFMDVFNVTDEDGNKITD 93
+ A I++ G DVF VTD + ++D
Sbjct: 841 SLQNAKIATLGERVEDVFFVTDANNQPLSD 870
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 30/212 (14%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISD-PE 184
T I + D+ + A ++ L N+ A + T ++ V + GG+I D P
Sbjct: 705 TQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGDNPA 764
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R+ I+E L LK ++ T + + V R+L FA
Sbjct: 765 RIKQIREGLIEALKNPDEY---PTIIQRRVP---RQLKHFAFA----------------- 801
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N + +++ +T+ DRP L+ + + +A I G +F
Sbjct: 802 --PQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFF 859
Query: 305 IRHIDGSPVKSDAERERVIQCLKAAIERRVSE 336
+ + P+ SD E + L+ I RR+SE
Sbjct: 860 VTDANNQPL-SDPE---LCARLQETIVRRLSE 887
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T N RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSNGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RQAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
PRV I+N TVI V+ ++ G+L E+ +++DL+L + A+I++ G +D F VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 85 DEDGNKITD 93
D G+KI++
Sbjct: 894 DLVGHKISN 902
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ G DRPGLLSE++ +++ L ++ SA + T + VTD G IS+ R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 186 LSVIKELLCNVLKGSN 201
IK L +L N
Sbjct: 906 QGNIKRKLLALLGAEN 921
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 399
+E+ DR GLLS +T + + SL + A + T K +++FYV G+ KI ++
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNAT 904
Query: 400 RQ-SIGQTILKVKG 412
RQ +I + +L + G
Sbjct: 905 RQGNIKRKLLALLG 918
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPE 184
T I + D P LLS ++ N+V A+++T + RA + ++ E D E
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFD---TDDDE 792
Query: 185 RLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEK 244
R + + + G +V +DV + L M+ +RT + K
Sbjct: 793 R------------RRAERVG----KVIEDVLSGKAHLPDML-----AKRTKPKKAARAFK 831
Query: 245 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYF 304
P V + N ++V+ + DRP L+ + ++D+ + A+I G + ++
Sbjct: 832 VEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
Query: 305 IRHIDGSPVKSDAERE 320
+ + G + S+A R+
Sbjct: 892 VTDLVGHKI-SNATRQ 906
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V I N TVI ++ ++ G+L EV VL DL+L + A I++ G +D F V
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 85 DEDGNKITDE 94
D G KIT+E
Sbjct: 886 DLVGQKITNE 895
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383
+E+ DR+GLL+ VT + + SL + A + T K ++TFYV
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYV 884
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALM--------QVTDEETG 177
T IE+ DR GLL+EV+AVL L ++ SA + T + ++T+E
Sbjct: 839 TVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKITNENRQ 898
Query: 178 GAIS 181
G+IS
Sbjct: 899 GSIS 902
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKITD 93
+ T I + + ++H V + LNL + A I + F +D + V D DG I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 94 -----EGILDYIRKCL-GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ I D + + L PE A R V + + H T +E+
Sbjct: 762 NPQRVKQIRDGLTEALRTPEDYPAIIQRRV--PRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190
T DRPGLL+ + + ++ +A++ T R + +TD + +SDP+ S ++
Sbjct: 820 TAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Query: 191 ELLCNVLKGSNKS 203
E + L+ S
Sbjct: 879 EAIIQQLQAGQAS 891
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 305 IRHIDGSP---VKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFREN 361
++H D P + +DA+R I LE+ DR GLL+ + RIF E
Sbjct: 795 LKHFDFPPQVTILNDAQRPVTI----------------LEITAPDRPGLLARIGRIFLEF 838
Query: 362 SLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTILKVKGNPEDLKSA 420
+++ A++AT + + F++ A P+ D ++ ++++I Q + A
Sbjct: 839 DISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIIQQL--------QAGQA 890
Query: 421 SQDSPTRFLF 430
S+ SP+R F
Sbjct: 891 SEASPSRMTF 900
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+A + T++ + + ++ G+L + ++ + ++ + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 84 TDEDGNKITDEGILDYIRKCL 104
TD D ++D + +++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP V I N TVI V+ ++ G+L ++ V+ DL+L + A I++ G +D F V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 84 TDEDGNKITDE 94
TD G K+T++
Sbjct: 886 TDLFGQKVTND 896
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%)
Query: 247 PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 306
P+V + N ++V+ + DRP L+ D + D+ + A I G + +++
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 307 HIDGSPVKSDAERERVIQCLKAAIERRVSE 336
+ G V +D + + Q LKA + + E
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 334 VSEGLK-----LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASG 388
+S GL +E+ DR GLL+++T + + SL + A + T K ++TFYV G
Sbjct: 831 ISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFG 890
Query: 389 YPVDAKIIDSIRQSIGQTILKVKGNPED 416
V D+ + SI Q + V ED
Sbjct: 891 QKVTN---DNRQASIAQRLKAVMSEQED 915
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
PP+V I N+ + T++ + + ++ G+L V Q+ D +L V A I++ G DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 84 TDEDGNKITD 93
TD D ++D
Sbjct: 861 TDADNQPLSD 870
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 32/133 (24%)
Query: 303 YFIRHIDGSPVKSDAER-ERVIQCLKAA----------IERRVSEGLK------------ 339
Y + DGSP+ ++ ER E + L AA I+RRV LK
Sbjct: 749 YIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHN 808
Query: 340 --------LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391
LE+ DR GLL+ V ++F + L+V A++AT + + F+V A P+
Sbjct: 809 DTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPL 868
Query: 392 -DAKIIDSIRQSI 403
D ++ ++Q+I
Sbjct: 869 SDPQLCLRLQQAI 881
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 32/187 (17%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDEDGNKI-T 92
+ T I + + ++H V + LNL + A I + F +D + V + DG+ I
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPIGN 761
Query: 93 DEGILDYIRKCL-----GPEACFASSMRSVGVKQSMDH-----------------TAIEL 130
+ ++ IR L P+ R V + + H T +E+
Sbjct: 762 NPERIEEIRSGLIAALRNPDDYLTIIQRRV--PRQLKHFAFPPQVTIHNDTQRPQTILEI 819
Query: 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE---RL- 186
DRPGLL+ V + +V +A++ T R + VTD + +SDP+ RL
Sbjct: 820 IAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADN-QPLSDPQLCLRLQ 878
Query: 187 -SVIKEL 192
++IKEL
Sbjct: 879 QAIIKEL 885
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 23 NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDV 80
N P V+I +A + T + V + ++ + VV L N V A I S DG +D
Sbjct: 677 NKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTSKDGH-VIDT 735
Query: 81 FNVTDEDGNKITDE---GILDYIRKCLGPEACFASSMRS---------VGVKQSMD---- 124
F V D+ G I + ++ ++ L EA + +++ VK +D
Sbjct: 736 FMVLDQHGEAIDESRHAAVIKHLTHVL--EAGRPTKIKTRRTPNKLQHFNVKTKVDFLPT 793
Query: 125 ----HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 180
HT +E D PGLL++V L N+ A++ T RA L +T E GG +
Sbjct: 794 KGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTS-EAGGRL 852
Query: 181 SDPER 185
S+ ++
Sbjct: 853 SEEQQ 857
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V IDN+A +ATV+ ++ G+L + + L D L + A+I G +D F V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 85 DEDGNKITD 93
+G K+TD
Sbjct: 894 TTEGGKVTD 902
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 27/197 (13%)
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
V+ + + + DR GL ++++ ++ L NVV A V+T A + + TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 179 AIS--DPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGT 236
+P L + + L KG D E R R E+T
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------DALAVEPR--------RGSEQTRA 827
Query: 237 DDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG 296
++ P+V + N D +VV + +DRP L+ TL D + A+ID G
Sbjct: 828 AAFAIA----PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYG 883
Query: 297 PEAYQEYFIRHIDGSPV 313
A ++++ +G V
Sbjct: 884 ERAVDAFYVQTTEGGKV 900
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 26/171 (15%)
Query: 36 NATVIRVDSANKHGILLEVVQVLTDL--NLIVTKAYISSDGCWFMDVFNVTDEDGNKITD 93
NA + + + ++ G+ ++ ++ L N++ + + S G +DVF V D G
Sbjct: 734 NAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGC 792
Query: 94 EGILDYIRKCLGPEACFASSMRSV----GVKQ------------------SMDHTAIELT 131
E R EA +V G +Q S D T +E +
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEAS 852
Query: 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISD 182
G DRPGLL ++ L ++ SA + + RA V E GG ++D
Sbjct: 853 GRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE-GGKVTD 902
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 33/155 (21%)
Query: 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKSDAER- 319
V I +KDR L D ++ + V A + + +A ++++ + G+P + R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 320 -ERVIQCLKAAIE--------RRVSEGLK----------------------LELCTTDRV 348
R+ L+AA + RR SE + +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383
GLL + + +++L++ A + +AV+ FYV
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V IDN+A +ATV+ ++ G+L + + L D L + A+I G +D F V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 85 DEDGNKITD 93
+G K+TD
Sbjct: 894 TTEGGKVTD 902
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 27/197 (13%)
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
V+ + + + DR GL ++++ ++ L NVV A V+T A + + TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 179 AIS--DPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGT 236
+P L + + L KG D E R R E+T
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------DALAVEPR--------RGSEQTRA 827
Query: 237 DDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG 296
++ P+V + N D +VV + +DRP L+ TL D + A+ID G
Sbjct: 828 AAFAIA----PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYG 883
Query: 297 PEAYQEYFIRHIDGSPV 313
A ++++ +G V
Sbjct: 884 ERAVDAFYVQTTEGGKV 900
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 26/171 (15%)
Query: 36 NATVIRVDSANKHGILLEVVQVLTDL--NLIVTKAYISSDGCWFMDVFNVTDEDGNKITD 93
NA + + + ++ G+ ++ ++ L N++ + + S G +DVF V D G
Sbjct: 734 NAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGC 792
Query: 94 EGILDYIRKCLGPEACFASSMRSV----GVKQ------------------SMDHTAIELT 131
E R EA +V G +Q S D T +E +
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEAS 852
Query: 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISD 182
G DRPGLL ++ L ++ SA + + RA V E GG ++D
Sbjct: 853 GRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE-GGKVTD 902
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 33/155 (21%)
Query: 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKSDAER- 319
V I +KDR L D ++ + V A + + +A ++++ + G+P + R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 320 -ERVIQCLKAAIE--------RRVSEGLK----------------------LELCTTDRV 348
R+ L+AA + RR SE + +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383
GLL + + +++L++ A + +AV+ FYV
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 108 ACFASSMRSVGVKQ---------SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV 158
A FA +R +G + D T +D PG+ S ++ L + NVV A
Sbjct: 714 AVFARMLRGLGETEIRIDLDPDPDRDATRACFALADHPGIFSRLAGALALVGANVVDART 773
Query: 159 WT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHT 217
+T + A A+ + D E G+ + RL + ++ LKG + E +D
Sbjct: 774 YTTKDGYATAVFWIQDSE--GSPYEISRLPRLTSMIDKTLKGE----VVAREALKDRDKL 827
Query: 218 ERRLHQMMFADR-DYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDT 276
++R Q F ++ G+D Y+++ + ++DRP L++D
Sbjct: 828 KKREAQFRFPTHIAFDNEGSDI--------------------YTIIEVDTRDRPGLLYDL 867
Query: 277 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330
TL + A I G + ++++ + G + +E + + L+ AI
Sbjct: 868 TRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAI 921
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 24 PPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83
P + DNE T+I VD+ ++ G+L ++ + L N+ + A I++ G +D F V
Sbjct: 837 PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYV 896
Query: 84 TDEDGNKI 91
D G K+
Sbjct: 897 KDMFGLKL 904
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAK----- 394
+E+ T DR GLL ++TR N++ + A +AT + V++FYV G + K
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLKLHQKNRQET 912
Query: 395 IIDSIRQSI 403
+ +RQ+I
Sbjct: 913 LEKKLRQAI 921
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 36/172 (20%)
Query: 249 VNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHAN-IDAEGPEAYQEYFIRH 307
V + N + + V I KDRP L V + + + + A I + A+ + +
Sbjct: 688 VKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTE 747
Query: 308 IDGSPVKSDAERERVIQCLKAAIERRVSEGL----------------------------- 338
+DGS +K D R RV++ KA I S L
Sbjct: 748 LDGSLLKFD--RRRVLE--KAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTT 803
Query: 339 --KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASG 388
++EL T D+ GLL++V+ +F E +L++ A++ T KA + F + A G
Sbjct: 804 HTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKG 855
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 27 VVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFNVT 84
V I N T + + ++ + L+VV + + L + A I S DG F D F VT
Sbjct: 688 VKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAF-DSFIVT 746
Query: 85 DEDGN-------KITDEGILDYIR-----KCLGPEACFASSMRSVGVK--------QSMD 124
+ DG+ ++ ++ I++ + K G E ++ VK +
Sbjct: 747 ELDGSLLKFDRRRVLEKAIINSLNSNELTKLQGSEN---HKLQHFNVKTEVRFLNTEKTT 803
Query: 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 184
HT +EL D+ GLL++VS V + L ++ +A++ T +A +T+ + G A+S+ E
Sbjct: 804 HTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAK-GEALSERE 862
Query: 185 RLSVIKEL 192
R S+ ++L
Sbjct: 863 RQSLSEKL 870
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYI--SSDGCWFMDVFN 82
P V+I +A + T + V S ++ + VV L N V A I S DG + +D F
Sbjct: 679 PLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDG-YVLDTFM 737
Query: 83 VTDEDGNKITDEG-----------ILDYIRKCLGPEACFASSMRSVGVKQSMD------- 124
V D+ G I +EG +L+ R + ++ VK +D
Sbjct: 738 VLDQHGKAI-EEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSK 796
Query: 125 -HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDP 183
T +E D PGLL++V L N+ +A++ T RA L +T E GG +S+
Sbjct: 797 KRTLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTS-EAGGRLSEE 855
Query: 184 ERLSVIKELL 193
++ + ++L+
Sbjct: 856 QQTELREKLI 865
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V IDN+A TVI V++ ++ +L ++ L + L ++ A+I++ G +DVF V+
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 85 DEDGNKITDEGILDYIRKCL 104
D +KIT++ L I K L
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 38/192 (19%)
Query: 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQ--VTDEETGGA 179
+ D T I L D PG +S + N++ A + H TR M + GG
Sbjct: 732 AYDATMISLYAIDHPGFFYRISGAIHATGGNILDARI--HTTRDGMAMDNLLVQNSQGGM 789
Query: 180 ISDPERLS----VIKELLCNVLKGSNKSGLAKTEVSQ--DVTHTERRLHQMMFADRDYER 233
I E L+ I++ + ++ SNK + + H E
Sbjct: 790 IKSGEHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVE--------------- 834
Query: 234 TGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID 293
P V + N ++V+ + ++DRP L+ D C L + + + A+I
Sbjct: 835 -------------PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIA 881
Query: 294 AEGPEAYQEYFI 305
G A +++
Sbjct: 882 TYGERAVDVFYV 893
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 185
T IE+ DRP LL ++ L + + + SA + T+ RA + V+D + I++ R
Sbjct: 848 TVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFS-HKITNQNR 906
Query: 186 LSVIKELLC 194
L I++ L
Sbjct: 907 LKAIEKRLL 915
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKA-YISSDGCWFMDVFNVTDEDGNKITD 93
+ T I + + ++H V + LNL + A I+S + +D + V D DG+ I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTDGDSIGD 761
Query: 94 -----EGILDYIRKCLGPEACFASSMRSVGVKQSMDH-----------------TAIELT 131
+ I D + + L A + + ++ V + + H T +ELT
Sbjct: 762 NPVRVKQIRDGLTEALRNPADYPTIIQR-RVPRQLKHFAFAPQVTIHNDAQRPVTVLELT 820
Query: 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKE 191
DRPGLL+ V + ++ +A++ T R + +TD +SDP
Sbjct: 821 APDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHN-QPLSDP-------- 871
Query: 192 LLCNVLK 198
LLC+ L+
Sbjct: 872 LLCSRLQ 878
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 14 EYEKLIRRMNP---------PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLI 64
+Y +I+R P P+V I N+A + TV+ + + ++ G+L V + + +L
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLS 841
Query: 65 VTKAYISSDGCWFMDVFNVTDEDGNKITD 93
+ A I++ G DVF +TD ++D
Sbjct: 842 LQNAKIATLGERVEDVFFITDAHNQPLSD 870
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 308 IDGSPVKSDAERERVIQCLK------AAIERRVSEGLK--------------------LE 341
I +PV+ R+ + + L+ I+RRV LK LE
Sbjct: 759 IGDNPVRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTVLE 818
Query: 342 LCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ 401
L DR GLL+ V IF E L++ A++AT + + F++ A P+ ++ S Q
Sbjct: 819 LTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPLLCSRLQ 878
Query: 402 SIGQTILKVKGNPE 415
L V P+
Sbjct: 879 DAIVEQLSVNQEPD 892
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 25 PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84
P V+ DN+A TVI V + ++ +L + + L + LIV A+I++ G +D F VT
Sbjct: 820 PIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVT 879
Query: 85 DEDGNKITDEGILDYIRKCL 104
D G K+ E + + K L
Sbjct: 880 DVLGEKVDSEARMKAVEKRL 899
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAK 394
+E+ DR LL+ + R E L V A +AT +AV+TFYV G VD++
Sbjct: 835 IEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVDSE 889
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173
K S T IE+ DRP LL+ ++ L + V SA + T+ RA VTD
Sbjct: 827 KASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTD 880
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 29 IDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-MDVFNVTDED 87
I + T I + + ++H V + LNL + A I + F +D + V D D
Sbjct: 696 ITQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDND 755
Query: 88 GNKITD---------EGILDYIRK-------------------CLGPEACFAS-SMRSVG 118
G I + +G+ D +R PE + + R V
Sbjct: 756 GESIGNNPQRVEQIRKGLTDALRNPDDYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPV- 814
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
T +EL+ DRPGLL+ + + ++ +A++ T R + +TD
Sbjct: 815 -------TVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHN-Q 866
Query: 179 AISDPERLSVIKELLCNVLKGSNKSGLAKTEVS 211
+SDP+ S +++ + L S++ + T +S
Sbjct: 867 PLSDPQLCSRLQDAIVEQLSVSHEPTIEMTRLS 899
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 13 DEYEKLIRRMNP---------PRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNL 63
D+Y +I+R P P V I N+A + TV+ + + ++ G+L + ++ + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDL 840
Query: 64 IVTKAYISSDGCWFMDVFNVTDEDGNKITD 93
+ A I++ G DVF +TD ++D
Sbjct: 841 SLQNAKIATLGERVEDVFFITDAHNQPLSD 870
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391
LEL DR GLL+ + +IF E L++ A++AT + + F++ A P+
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPL 868
>sp|B0VC63|GLND_ACIBY [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AYE) GN=glnD PE=3 SV=1
Length = 887
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGA 179
K + D I + D+P L + AVL + +V A++ T +T + V + G
Sbjct: 693 KAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTL 752
Query: 180 ISDPERLSVIKELLCNVLKGSNK-SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDD 238
++DPER +K L L ++ GL + + + + H ++ T D
Sbjct: 753 LTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRH--------------FDIENTVD 798
Query: 239 DSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH-ANIDAEGP 297
+L+E + N +V I++ D P L+ V L MQ + H A I G
Sbjct: 799 VTLNEALQQN------------MVEISTLDHPGLL-ARVGGLFMMQGLDIHSARIATLGE 845
Query: 298 EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331
A +F+ DG P+ ++ E + + LKAA++
Sbjct: 846 RAEDIFFVTKKDGKPLNNE-EVKLFSEKLKAALD 878
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 23 NPPRVVI---DNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-M 78
NP +V+ +A ++A I + + ++ + V VL +NL V A I + F +
Sbjct: 681 NPEPLVLLRAHRKAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSL 740
Query: 79 DVFNVTDEDGNKITD----EGILDYIRKCLGPEACFASSMR----------------SVG 118
D + V D G +TD E + + + K L + M+ V
Sbjct: 741 DTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVT 800
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
+ +++ +E++ D PGLL+ V + ++ SA + T RA + VT ++ G
Sbjct: 801 LNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKD--G 858
Query: 179 AISDPERLSVIKELLCNVL-KGSNK 202
+ E + + E L L + SN+
Sbjct: 859 KPLNNEEVKLFSEKLKAALDEASNQ 883
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKS 315
+D + I ++D+P L TV L M V A I A + Y + G+ + +
Sbjct: 696 QDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGT-LLT 754
Query: 316 DAERERVIQ--CLKAA---------IERRVSEGLK--------------------LELCT 344
D ERE ++ +KA ++RR+ L+ +E+ T
Sbjct: 755 DPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEIST 814
Query: 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 392
D GLL+ V +F L + A +AT +A + F+V G P++
Sbjct: 815 LDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLN 862
>sp|B7I420|GLND_ACIB5 [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AB0057) GN=glnD PE=3 SV=1
Length = 887
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGA 179
K + D I + D+P L + AVL + +V A++ T +T + V + G
Sbjct: 693 KAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTL 752
Query: 180 ISDPERLSVIKELLCNVLKGSNK-SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDD 238
++DPER +K L L ++ GL + + + + H ++ T D
Sbjct: 753 LTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRH--------------FDIENTVD 798
Query: 239 DSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH-ANIDAEGP 297
+L+E + N +V I++ D P L+ V L MQ + H A I G
Sbjct: 799 VTLNEALQQN------------MVEISTLDHPGLL-ARVGGLFMMQGLDIHSARIATLGE 845
Query: 298 EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331
A +F+ DG P+ ++ E + + LKAA++
Sbjct: 846 RAEDIFFVTKKDGKPLNNE-EVKLFSEKLKAALD 878
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 23 NPPRVVI---DNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-M 78
NP +V+ +A ++A I + + ++ + V VL +NL V A I + F +
Sbjct: 681 NPEPLVLLRAHRKAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSL 740
Query: 79 DVFNVTDEDGNKITD----EGILDYIRKCLGPEACFASSMR----------------SVG 118
D + V D G +TD E + + + K L + M+ V
Sbjct: 741 DTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVT 800
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
+ +++ +E++ D PGLL+ V + ++ SA + T RA + VT ++ G
Sbjct: 801 LNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKD--G 858
Query: 179 AISDPERLSVIKELLCNVL-KGSNK 202
+ E + + E L L + SN+
Sbjct: 859 KPLNNEEVKLFSEKLKAALDEASNQ 883
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKS 315
+D + I ++D+P L TV L M V A I A + Y + G+ + +
Sbjct: 696 QDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGT-LLT 754
Query: 316 DAERERVIQ--CLKAA---------IERRVSEGLK--------------------LELCT 344
D ERE ++ +KA ++RR+ L+ +E+ T
Sbjct: 755 DPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEIST 814
Query: 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 392
D GLL+ V +F L + A +AT +A + F+V G P++
Sbjct: 815 LDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLN 862
>sp|B7H3W7|GLND_ACIB3 [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AB307-0294) GN=glnD PE=3 SV=1
Length = 887
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGA 179
K + D I + D+P L + AVL + +V A++ T +T + V + G
Sbjct: 693 KAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTL 752
Query: 180 ISDPERLSVIKELLCNVLKGSNK-SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDD 238
++DPER +K L L ++ GL + + + + H ++ T D
Sbjct: 753 LTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRH--------------FDIENTVD 798
Query: 239 DSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH-ANIDAEGP 297
+L+E + N +V I++ D P L+ V L MQ + H A I G
Sbjct: 799 VTLNEALQQN------------MVEISTLDHPGLL-ARVGGLFMMQGLDIHSARIATLGE 845
Query: 298 EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331
A +F+ DG P+ ++ E + + LKAA++
Sbjct: 846 RAEDIFFVTKKDGKPLNNE-EVKLFSEKLKAALD 878
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 23 NPPRVVI---DNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-M 78
NP +V+ +A ++A I + + ++ + V VL +NL V A I + F +
Sbjct: 681 NPEPLVLLRAHRKAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSL 740
Query: 79 DVFNVTDEDGNKITD----EGILDYIRKCLGPEACFASSMR----------------SVG 118
D + V D G +TD E + + + K L + M+ V
Sbjct: 741 DTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVT 800
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
+ +++ +E++ D PGLL+ V + ++ SA + T RA + VT ++ G
Sbjct: 801 LNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKD--G 858
Query: 179 AISDPERLSVIKELLCNVL-KGSNK 202
+ E + + E L L + SN+
Sbjct: 859 KPLNNEEVKLFSEKLKAALDEASNQ 883
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKS 315
+D + I ++D+P L TV L M V A I A + Y + G+ + +
Sbjct: 696 QDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGT-LLT 754
Query: 316 DAERERVIQ--CLKAA---------IERRVSEGLK--------------------LELCT 344
D ERE ++ +KA ++RR+ L+ +E+ T
Sbjct: 755 DPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEIST 814
Query: 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 392
D GLL+ V +F L + A +AT +A + F+V G P++
Sbjct: 815 LDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLN 862
>sp|B2HYT7|GLND_ACIBC [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain ACICU) GN=glnD PE=3 SV=1
Length = 887
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGA 179
K + D I + D+P L + AVL + +V A++ T +T + V + G
Sbjct: 693 KAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTL 752
Query: 180 ISDPERLSVIKELLCNVLKGSNK-SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDD 238
++DPER +K L L ++ GL + + + + H ++ T D
Sbjct: 753 LTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRH--------------FDIENTVD 798
Query: 239 DSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFH-ANIDAEGP 297
+L+E + N +V I++ D P L+ V L MQ + H A I G
Sbjct: 799 VTLNEALQQN------------MVEISTLDHPGLL-ARVGGLFMMQGLDIHSARIATLGE 845
Query: 298 EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331
A +F+ DG P+ ++ E + + LKAA++
Sbjct: 846 RAEDIFFVTKKDGKPLNNE-EVKLFSEKLKAALD 878
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 23 NPPRVVI---DNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWF-M 78
NP +V+ +A ++A I + + ++ + V VL +NL V A I + F +
Sbjct: 681 NPEPLVLLRAHRKAAQDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSL 740
Query: 79 DVFNVTDEDGNKITD----EGILDYIRKCLGPEACFASSMR----------------SVG 118
D + V D G +TD E + + + K L + M+ V
Sbjct: 741 DTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVT 800
Query: 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGG 178
+ +++ +E++ D PGLL+ V + ++ SA + T RA + VT ++ G
Sbjct: 801 LNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKD-GK 859
Query: 179 AISDPE 184
+++ E
Sbjct: 860 PLNNEE 865
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKS 315
+D + I ++D+P L TV L M V A I A + Y + G+ + +
Sbjct: 696 QDAVQIFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGT-LLT 754
Query: 316 DAERERVIQ--CLKAA---------IERRVSEGLK--------------------LELCT 344
D ERE ++ +KA ++RR+ L+ +E+ T
Sbjct: 755 DPEREETVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEIST 814
Query: 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 392
D GLL+ V +F L + A +AT +A + F+V G P++
Sbjct: 815 LDHPGLLARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLN 862
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,530,832
Number of Sequences: 539616
Number of extensions: 6406574
Number of successful extensions: 18896
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 18430
Number of HSP's gapped (non-prelim): 459
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)