Query 013090
Match_columns 449
No_of_seqs 359 out of 1911
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 00:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 6.5E-27 1.4E-31 261.0 23.2 174 21-197 661-853 (854)
2 PRK05007 PII uridylyl-transfer 99.9 9.8E-27 2.1E-31 260.4 22.9 174 23-199 687-880 (884)
3 PRK01759 glnD PII uridylyl-tra 99.9 2.2E-26 4.7E-31 256.8 23.1 183 118-330 670-853 (854)
4 PRK05007 PII uridylyl-transfer 99.9 6.3E-26 1.4E-30 253.9 24.1 184 119-331 695-879 (884)
5 PRK00275 glnD PII uridylyl-tra 99.9 1.7E-25 3.7E-30 250.6 23.6 177 23-200 687-888 (895)
6 PRK00275 glnD PII uridylyl-tra 99.9 5.9E-25 1.3E-29 246.2 24.4 183 123-331 702-886 (895)
7 TIGR01693 UTase_glnD [Protein- 99.9 5.2E-24 1.1E-28 238.9 25.9 186 120-330 663-849 (850)
8 PRK04374 PII uridylyl-transfer 99.9 4E-24 8.6E-29 238.2 22.9 174 23-198 675-867 (869)
9 TIGR01693 UTase_glnD [Protein- 99.9 4.4E-24 9.6E-29 239.5 22.8 174 22-197 653-849 (850)
10 COG2844 GlnD UTP:GlnB (protein 99.9 3E-24 6.4E-29 228.4 19.6 164 244-408 669-862 (867)
11 PRK05092 PII uridylyl-transfer 99.9 2E-23 4.3E-28 235.8 27.1 188 120-331 727-915 (931)
12 PRK03381 PII uridylyl-transfer 99.9 7.3E-24 1.6E-28 234.4 22.9 169 22-194 585-773 (774)
13 PRK03059 PII uridylyl-transfer 99.9 6.2E-24 1.3E-28 237.0 22.4 172 22-198 663-855 (856)
14 PRK04374 PII uridylyl-transfer 99.9 1.2E-23 2.7E-28 234.3 23.6 182 120-331 685-867 (869)
15 PRK05092 PII uridylyl-transfer 99.9 2.2E-23 4.8E-28 235.4 23.7 177 23-200 718-917 (931)
16 PRK03059 PII uridylyl-transfer 99.9 5.8E-23 1.3E-27 229.3 23.6 182 120-331 673-855 (856)
17 PRK03381 PII uridylyl-transfer 99.9 4.7E-23 1E-27 228.0 22.1 179 120-327 595-773 (774)
18 COG2844 GlnD UTP:GlnB (protein 99.9 3.9E-23 8.4E-28 219.9 19.8 178 18-198 664-862 (867)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 7E-20 1.5E-24 143.6 11.0 75 259-333 1-75 (75)
20 cd04897 ACT_ACR_3 ACT domain-c 99.7 1.3E-17 2.8E-22 130.8 9.8 73 125-198 1-73 (75)
21 cd04895 ACT_ACR_1 ACT domain-c 99.7 2.7E-17 5.8E-22 128.1 10.3 69 125-194 1-69 (72)
22 PRK11589 gcvR glycine cleavage 99.7 6.9E-17 1.5E-21 149.6 13.7 141 256-404 5-163 (190)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 8.4E-17 1.8E-21 125.3 10.4 69 259-327 1-69 (72)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 2.7E-16 5.8E-21 123.4 9.5 72 126-199 1-74 (75)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 4.2E-16 9.1E-21 122.3 10.4 72 260-332 1-74 (75)
26 COG2716 GcvR Glycine cleavage 99.6 1.8E-15 4E-20 134.3 8.9 141 257-405 3-161 (176)
27 cd04925 ACT_ACR_2 ACT domain-c 99.6 3.9E-15 8.4E-20 117.4 9.5 73 126-199 1-74 (74)
28 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.9E-14 6.3E-19 112.1 9.8 71 126-197 2-73 (73)
29 cd04925 ACT_ACR_2 ACT domain-c 99.5 5.1E-14 1.1E-18 111.0 10.7 72 260-331 1-73 (74)
30 cd04900 ACT_UUR-like_1 ACT dom 99.5 4.3E-14 9.4E-19 111.1 10.2 70 37-106 1-71 (73)
31 cd04927 ACT_ACR-like_2 Second 99.5 1.3E-13 2.9E-18 109.2 10.9 70 261-331 2-72 (76)
32 cd04927 ACT_ACR-like_2 Second 99.5 9E-14 2E-18 110.2 9.7 71 127-199 2-73 (76)
33 PRK11589 gcvR glycine cleavage 99.5 7.5E-13 1.6E-17 122.7 15.6 127 123-296 6-132 (190)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 7.1E-13 1.5E-17 102.0 9.8 65 38-104 2-67 (68)
35 cd04926 ACT_ACR_4 C-terminal 99.3 9.2E-12 2E-16 97.6 10.6 70 38-108 2-71 (72)
36 cd04928 ACT_TyrKc Uncharacteri 99.3 1.7E-11 3.8E-16 94.3 9.6 65 260-330 2-67 (68)
37 PRK00227 glnD PII uridylyl-tra 99.3 4.1E-11 8.9E-16 130.6 14.4 143 38-199 547-692 (693)
38 cd04926 ACT_ACR_4 C-terminal 99.3 4.2E-11 9.2E-16 93.8 10.3 68 126-195 2-69 (72)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.3E-10 2.8E-15 90.0 9.6 70 126-197 1-70 (70)
40 COG2716 GcvR Glycine cleavage 99.2 3.4E-10 7.5E-15 100.9 12.6 126 123-295 3-128 (176)
41 PRK00227 glnD PII uridylyl-tra 99.2 7.5E-10 1.6E-14 120.8 17.6 143 126-330 547-690 (693)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 3.2E-10 7E-15 87.7 10.2 70 260-330 1-70 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.9E-08 4.1E-13 77.4 9.6 69 126-196 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.8 5.9E-08 1.3E-12 74.6 9.9 67 39-106 2-68 (70)
45 cd04894 ACT_ACR-like_1 ACT dom 98.8 2.3E-08 5E-13 74.0 6.5 68 38-108 1-68 (69)
46 PF13740 ACT_6: ACT domain; PD 98.8 4.7E-08 1E-12 77.4 8.6 64 125-196 2-65 (76)
47 COG4747 ACT domain-containing 98.6 5.9E-07 1.3E-11 75.3 11.7 114 38-173 4-118 (142)
48 PF13740 ACT_6: ACT domain; PD 98.5 9.1E-07 2E-11 69.9 10.0 65 259-330 2-66 (76)
49 cd04894 ACT_ACR-like_1 ACT dom 98.5 3.6E-07 7.7E-12 67.8 6.1 68 126-197 1-68 (69)
50 cd04893 ACT_GcvR_1 ACT domains 98.4 1E-06 2.2E-11 69.9 7.4 63 125-195 1-63 (77)
51 cd04870 ACT_PSP_1 CT domains f 98.3 9.9E-07 2.1E-11 69.5 5.4 64 127-197 1-64 (75)
52 PF01842 ACT: ACT domain; Int 98.3 3.5E-06 7.5E-11 63.8 8.1 48 126-173 1-50 (66)
53 PF01842 ACT: ACT domain; Int 98.3 4.2E-06 9E-11 63.3 8.4 48 38-85 1-50 (66)
54 cd04870 ACT_PSP_1 CT domains f 98.2 5.1E-06 1.1E-10 65.4 8.0 64 261-330 1-64 (75)
55 cd04893 ACT_GcvR_1 ACT domains 98.2 7.1E-06 1.5E-10 65.0 8.6 48 38-85 2-49 (77)
56 cd04872 ACT_1ZPV ACT domain pr 98.0 1.2E-05 2.6E-10 65.3 5.7 65 126-196 2-66 (88)
57 cd04875 ACT_F4HF-DF N-terminal 98.0 1.5E-05 3.2E-10 62.5 5.8 50 339-390 1-50 (74)
58 cd04869 ACT_GcvR_2 ACT domains 98.0 2.2E-05 4.8E-10 62.3 6.9 51 340-390 2-54 (81)
59 cd04875 ACT_F4HF-DF N-terminal 97.9 3.9E-05 8.5E-10 60.0 6.7 34 127-160 1-34 (74)
60 PRK00194 hypothetical protein; 97.8 6E-05 1.3E-09 61.3 7.4 49 125-173 3-51 (90)
61 cd04872 ACT_1ZPV ACT domain pr 97.8 3.5E-05 7.7E-10 62.5 6.0 65 260-329 2-66 (88)
62 PRK07431 aspartate kinase; Pro 97.8 0.025 5.4E-07 61.9 28.9 262 44-369 278-554 (587)
63 cd04869 ACT_GcvR_2 ACT domains 97.8 0.00013 2.7E-09 57.9 7.8 49 39-87 1-55 (81)
64 PF13291 ACT_4: ACT domain; PD 97.7 0.00026 5.7E-09 56.1 9.5 64 125-195 6-71 (80)
65 PRK00194 hypothetical protein; 97.7 0.00012 2.5E-09 59.6 7.4 49 37-85 3-51 (90)
66 COG4747 ACT domain-containing 97.6 0.0011 2.4E-08 55.9 11.6 112 261-384 5-117 (142)
67 TIGR00655 PurU formyltetrahydr 97.6 0.002 4.4E-08 63.6 14.7 109 39-154 2-113 (280)
68 PRK13010 purU formyltetrahydro 97.6 0.0015 3.3E-08 64.8 13.7 36 36-71 8-43 (289)
69 PRK13010 purU formyltetrahydro 97.5 0.0012 2.7E-08 65.4 12.8 101 259-364 9-120 (289)
70 PRK06027 purU formyltetrahydro 97.5 0.0033 7.2E-08 62.4 15.6 102 258-364 5-116 (286)
71 COG3830 ACT domain-containing 97.5 0.00014 3E-09 58.6 4.3 49 125-173 3-51 (90)
72 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.001 2.2E-08 51.6 9.1 61 128-195 2-63 (74)
73 PRK13011 formyltetrahydrofolat 97.4 0.00032 6.9E-09 69.5 7.1 54 337-392 7-60 (286)
74 PF13291 ACT_4: ACT domain; PD 97.4 0.0015 3.3E-08 51.7 9.1 64 38-107 7-72 (80)
75 TIGR00655 PurU formyltetrahydr 97.3 0.0041 9E-08 61.4 13.6 100 261-365 2-112 (280)
76 PRK13011 formyltetrahydrofolat 97.3 0.0063 1.4E-07 60.4 14.5 99 260-364 8-116 (286)
77 PRK06027 purU formyltetrahydro 97.3 0.0048 1E-07 61.3 13.6 67 36-107 5-73 (286)
78 COG3830 ACT domain-containing 97.3 0.00027 5.8E-09 57.0 3.8 49 37-85 3-51 (90)
79 PRK06737 acetolactate synthase 97.3 0.0023 4.9E-08 50.5 8.7 64 338-405 3-66 (76)
80 CHL00100 ilvH acetohydroxyacid 97.3 0.001 2.2E-08 61.0 7.7 71 338-412 3-75 (174)
81 cd04887 ACT_MalLac-Enz ACT_Mal 97.2 0.0028 6E-08 49.1 8.8 60 262-327 2-62 (74)
82 cd04877 ACT_TyrR N-terminal AC 97.2 0.0023 5E-08 50.0 8.1 59 127-195 2-60 (74)
83 PRK13562 acetolactate synthase 97.1 0.0041 8.9E-08 49.8 8.8 71 338-411 3-75 (84)
84 cd04889 ACT_PDH-BS-like C-term 97.1 0.0019 4.1E-08 47.4 6.2 46 128-173 1-47 (56)
85 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0043 9.4E-08 47.1 8.3 60 128-194 1-65 (73)
86 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0059 1.3E-07 46.5 8.1 45 126-172 2-46 (66)
87 PRK08178 acetolactate synthase 96.9 0.0078 1.7E-07 49.5 8.7 73 336-413 7-81 (96)
88 TIGR00119 acolac_sm acetolacta 96.8 0.009 1.9E-07 53.9 9.7 72 338-413 2-75 (157)
89 cd04889 ACT_PDH-BS-like C-term 96.8 0.004 8.7E-08 45.6 6.2 45 340-384 1-46 (56)
90 cd04888 ACT_PheB-BS C-terminal 96.8 0.01 2.2E-07 46.0 8.8 62 127-195 2-65 (76)
91 cd04905 ACT_CM-PDT C-terminal 96.8 0.011 2.4E-07 46.8 8.8 50 338-388 2-52 (80)
92 cd04909 ACT_PDH-BS C-terminal 96.8 0.01 2.2E-07 45.3 8.3 47 126-172 2-50 (69)
93 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.011 2.5E-07 45.5 8.7 62 127-195 2-65 (79)
94 COG0788 PurU Formyltetrahydrof 96.7 0.0057 1.2E-07 58.9 7.9 44 36-79 6-51 (287)
95 COG0788 PurU Formyltetrahydrof 96.6 0.0079 1.7E-07 58.0 8.2 66 124-195 6-73 (287)
96 PRK11895 ilvH acetolactate syn 96.6 0.014 3E-07 52.9 9.5 72 338-413 3-76 (161)
97 cd04908 ACT_Bt0572_1 N-termina 96.6 0.009 2E-07 45.5 7.1 45 338-384 2-46 (66)
98 cd04878 ACT_AHAS N-terminal AC 96.6 0.023 4.9E-07 42.9 9.1 61 127-195 2-64 (72)
99 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.0084 1.8E-07 46.2 6.5 64 338-405 1-65 (79)
100 cd04878 ACT_AHAS N-terminal AC 96.5 0.011 2.3E-07 44.7 7.0 61 339-405 2-64 (72)
101 cd04886 ACT_ThrD-II-like C-ter 96.5 0.018 3.9E-07 43.6 8.2 34 262-295 1-34 (73)
102 PRK11152 ilvM acetolactate syn 96.5 0.021 4.6E-07 45.0 8.4 61 338-405 4-66 (76)
103 cd04874 ACT_Af1403 N-terminal 96.4 0.022 4.8E-07 43.1 8.1 46 127-172 2-48 (72)
104 PRK06737 acetolactate synthase 96.4 0.03 6.6E-07 44.2 8.7 63 126-196 3-67 (76)
105 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.01 2.2E-07 44.6 6.1 45 128-172 2-48 (71)
106 PRK08178 acetolactate synthase 96.4 0.036 7.7E-07 45.6 9.4 86 260-358 9-95 (96)
107 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.021 4.6E-07 42.8 7.8 44 40-83 2-47 (71)
108 cd04898 ACT_ACR-like_4 ACT dom 96.3 0.0042 9.2E-08 48.2 3.5 53 339-392 2-58 (77)
109 cd04903 ACT_LSD C-terminal ACT 96.3 0.027 5.9E-07 42.4 7.9 33 340-372 2-34 (71)
110 CHL00100 ilvH acetohydroxyacid 96.2 0.021 4.6E-07 52.3 8.3 64 126-197 3-68 (174)
111 cd04931 ACT_PAH ACT domain of 96.2 0.028 6.1E-07 45.9 8.1 52 337-389 14-66 (90)
112 cd04888 ACT_PheB-BS C-terminal 96.1 0.032 7E-07 43.2 7.9 61 261-327 2-64 (76)
113 PRK13562 acetolactate synthase 96.1 0.041 9E-07 44.1 8.4 65 126-197 3-69 (84)
114 cd04909 ACT_PDH-BS C-terminal 96.1 0.024 5.2E-07 43.2 6.9 46 338-383 2-49 (69)
115 cd04880 ACT_AAAH-PDT-like ACT 96.1 0.044 9.6E-07 42.6 8.5 64 340-405 2-66 (75)
116 cd04877 ACT_TyrR N-terminal AC 96.1 0.042 9.1E-07 42.8 8.3 60 39-107 2-61 (74)
117 TIGR00119 acolac_sm acetolacta 96.1 0.044 9.6E-07 49.4 9.4 64 126-197 2-67 (157)
118 cd04903 ACT_LSD C-terminal ACT 96.1 0.044 9.5E-07 41.2 8.1 45 40-84 2-48 (71)
119 cd04902 ACT_3PGDH-xct C-termin 96.0 0.028 6E-07 43.1 6.9 46 128-173 2-49 (73)
120 cd04882 ACT_Bt0572_2 C-termina 96.0 0.022 4.7E-07 42.6 6.1 44 40-83 2-47 (65)
121 PRK07431 aspartate kinase; Pro 96.0 2.7 5.8E-05 46.0 24.8 190 35-291 346-554 (587)
122 cd04902 ACT_3PGDH-xct C-termin 96.0 0.033 7.2E-07 42.6 7.3 58 340-401 2-61 (73)
123 PRK08577 hypothetical protein; 96.0 0.063 1.4E-06 47.2 9.8 69 121-195 52-122 (136)
124 PRK08577 hypothetical protein; 96.0 0.033 7.1E-07 49.0 7.9 38 337-374 56-93 (136)
125 PRK11895 ilvH acetolactate syn 95.9 0.055 1.2E-06 49.0 9.4 64 126-197 3-68 (161)
126 cd04901 ACT_3PGDH C-terminal A 95.9 0.0095 2.1E-07 45.3 3.7 46 40-85 2-47 (69)
127 cd04898 ACT_ACR-like_4 ACT dom 95.9 0.018 4E-07 44.7 5.1 67 262-328 3-72 (77)
128 cd04882 ACT_Bt0572_2 C-termina 95.8 0.021 4.6E-07 42.6 5.2 36 127-162 1-36 (65)
129 cd04901 ACT_3PGDH C-terminal A 95.7 0.013 2.9E-07 44.4 4.0 44 340-383 2-45 (69)
130 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.089 1.9E-06 38.4 8.4 60 128-194 1-61 (71)
131 cd04876 ACT_RelA-SpoT ACT dom 95.6 0.09 1.9E-06 38.4 8.1 61 340-405 1-62 (71)
132 cd04905 ACT_CM-PDT C-terminal 95.6 0.11 2.5E-06 40.9 9.0 48 126-173 2-50 (80)
133 PF13710 ACT_5: ACT domain; PD 95.6 0.045 9.7E-07 41.5 6.3 56 346-405 1-56 (63)
134 cd04904 ACT_AAAH ACT domain of 95.6 0.071 1.5E-06 41.6 7.7 49 339-388 2-51 (74)
135 PRK04435 hypothetical protein; 95.6 0.12 2.5E-06 46.2 9.9 69 121-195 65-134 (147)
136 PRK11899 prephenate dehydratas 95.5 0.055 1.2E-06 53.5 8.4 57 337-394 194-251 (279)
137 PRK11152 ilvM acetolactate syn 95.5 0.083 1.8E-06 41.7 7.7 62 126-196 4-67 (76)
138 cd04884 ACT_CBS C-terminal ACT 95.5 0.089 1.9E-06 40.6 7.9 34 128-161 2-35 (72)
139 cd04874 ACT_Af1403 N-terminal 95.4 0.083 1.8E-06 39.9 7.4 46 39-84 2-48 (72)
140 cd04883 ACT_AcuB C-terminal AC 95.4 0.13 2.8E-06 39.3 8.5 34 338-371 2-35 (72)
141 cd02116 ACT ACT domains are co 95.3 0.14 3E-06 35.5 7.7 45 40-84 1-46 (60)
142 cd02116 ACT ACT domains are co 95.2 0.13 2.9E-06 35.5 7.5 35 340-374 1-35 (60)
143 PRK07334 threonine dehydratase 95.1 0.11 2.3E-06 54.2 9.3 65 124-195 325-394 (403)
144 cd04883 ACT_AcuB C-terminal AC 95.0 0.14 3E-06 39.1 7.5 47 38-84 2-50 (72)
145 TIGR00719 sda_beta L-serine de 94.9 0.13 2.7E-06 48.7 8.3 62 335-398 146-207 (208)
146 cd04884 ACT_CBS C-terminal ACT 94.6 0.21 4.6E-06 38.4 7.6 34 262-295 2-35 (72)
147 PRK04435 hypothetical protein; 94.5 0.27 5.9E-06 43.8 9.3 72 31-107 63-135 (147)
148 COG0077 PheA Prephenate dehydr 94.4 0.14 3.1E-06 50.3 7.8 57 337-394 194-251 (279)
149 cd04929 ACT_TPH ACT domain of 94.0 0.21 4.5E-06 39.2 6.5 49 340-389 3-52 (74)
150 PRK10872 relA (p)ppGpp synthet 93.9 0.27 5.8E-06 54.9 9.3 64 125-195 666-731 (743)
151 PF13710 ACT_5: ACT domain; PD 93.9 0.24 5.2E-06 37.5 6.4 56 134-197 1-58 (63)
152 cd04885 ACT_ThrD-I Tandem C-te 93.8 0.39 8.5E-06 36.6 7.6 61 128-195 1-61 (68)
153 TIGR00656 asp_kin_monofn aspar 93.7 1.2 2.7E-05 46.1 13.7 99 258-367 259-370 (401)
154 PRK06635 aspartate kinase; Rev 93.7 0.61 1.3E-05 48.5 11.3 102 44-157 270-375 (404)
155 cd04931 ACT_PAH ACT domain of 93.4 0.74 1.6E-05 37.5 8.9 69 258-331 13-83 (90)
156 TIGR00656 asp_kin_monofn aspar 93.3 1.3 2.8E-05 45.9 13.1 106 36-155 259-370 (401)
157 cd04880 ACT_AAAH-PDT-like ACT 93.2 0.73 1.6E-05 35.7 8.4 63 263-328 3-66 (75)
158 PRK10622 pheA bifunctional cho 93.2 0.36 7.7E-06 50.0 8.4 57 337-394 297-354 (386)
159 cd04871 ACT_PSP_2 ACT domains 93.1 0.046 1E-06 44.0 1.4 31 127-157 1-32 (84)
160 PRK06291 aspartate kinase; Pro 93.0 3.4 7.4E-05 43.9 15.8 113 257-383 319-445 (465)
161 PRK07334 threonine dehydratase 93.0 0.5 1.1E-05 49.2 9.3 62 260-327 327-393 (403)
162 PRK11092 bifunctional (p)ppGpp 93.0 0.48 1E-05 52.8 9.5 64 125-195 626-690 (702)
163 PRK08210 aspartate kinase I; R 92.8 2.6 5.5E-05 43.9 14.2 99 36-155 270-372 (403)
164 COG1707 ACT domain-containing 92.6 0.47 1E-05 42.8 7.1 46 127-172 4-51 (218)
165 cd04885 ACT_ThrD-I Tandem C-te 92.6 0.73 1.6E-05 35.1 7.4 60 263-328 2-61 (68)
166 cd04930 ACT_TH ACT domain of t 92.6 0.63 1.4E-05 39.8 7.7 52 337-389 41-93 (115)
167 TIGR00719 sda_beta L-serine de 92.4 0.49 1.1E-05 44.7 7.6 53 121-173 144-198 (208)
168 TIGR00691 spoT_relA (p)ppGpp s 92.4 0.59 1.3E-05 52.0 9.3 65 124-195 609-674 (683)
169 PRK06635 aspartate kinase; Rev 92.3 1.8 3.9E-05 44.9 12.5 103 258-369 261-375 (404)
170 PRK11790 D-3-phosphoglycerate 92.1 0.29 6.2E-06 51.2 6.2 61 337-401 338-398 (409)
171 PRK10872 relA (p)ppGpp synthet 92.1 0.74 1.6E-05 51.5 9.6 62 260-327 667-730 (743)
172 PRK11092 bifunctional (p)ppGpp 91.8 0.92 2E-05 50.6 9.9 73 249-327 615-689 (702)
173 COG0317 SpoT Guanosine polypho 91.2 0.92 2E-05 50.1 8.9 66 123-195 625-691 (701)
174 COG1707 ACT domain-containing 90.8 0.97 2.1E-05 40.8 7.1 47 339-385 4-52 (218)
175 PF13840 ACT_7: ACT domain ; P 90.7 0.83 1.8E-05 34.7 5.9 46 123-173 4-53 (65)
176 PRK09436 thrA bifunctional asp 90.6 7.2 0.00016 44.5 15.7 102 257-369 313-431 (819)
177 TIGR00691 spoT_relA (p)ppGpp s 90.1 1.7 3.7E-05 48.4 10.0 62 260-327 611-673 (683)
178 PRK09034 aspartate kinase; Rev 90.0 6.2 0.00013 41.8 13.7 110 37-160 308-423 (454)
179 PRK08818 prephenate dehydrogen 89.6 0.74 1.6E-05 47.4 6.3 50 336-386 294-344 (370)
180 PF13840 ACT_7: ACT domain ; P 89.5 1 2.2E-05 34.2 5.5 45 257-306 4-52 (65)
181 cd04906 ACT_ThrD-I_1 First of 89.4 2.6 5.7E-05 33.6 8.2 61 127-195 3-64 (85)
182 PRK06382 threonine dehydratase 89.3 2.1 4.5E-05 44.7 9.5 67 122-195 327-398 (406)
183 PLN02551 aspartokinase 89.0 12 0.00025 40.5 15.1 114 257-383 364-491 (521)
184 PRK06291 aspartate kinase; Pro 89.0 6 0.00013 42.0 12.8 110 36-159 320-435 (465)
185 cd04871 ACT_PSP_2 ACT domains 88.8 0.26 5.7E-06 39.5 1.8 32 39-70 1-33 (84)
186 PRK09181 aspartate kinase; Val 88.7 16 0.00034 39.1 15.7 113 257-383 327-448 (475)
187 COG0317 SpoT Guanosine polypho 88.7 2.1 4.5E-05 47.4 9.2 74 249-327 616-690 (701)
188 PRK08210 aspartate kinase I; R 88.7 7.7 0.00017 40.3 13.2 96 258-367 270-372 (403)
189 cd04904 ACT_AAAH ACT domain of 88.6 3.1 6.8E-05 32.3 7.8 47 127-173 2-49 (74)
190 PRK11790 D-3-phosphoglycerate 88.5 0.85 1.8E-05 47.7 5.9 50 124-173 337-386 (409)
191 PRK13581 D-3-phosphoglycerate 88.1 1.4 3E-05 47.6 7.5 63 337-401 452-514 (526)
192 PRK06545 prephenate dehydrogen 88.0 1.8 4E-05 44.3 7.9 48 337-384 290-337 (359)
193 cd04929 ACT_TPH ACT domain of 87.9 2.2 4.8E-05 33.3 6.6 46 128-173 3-49 (74)
194 TIGR00657 asp_kinases aspartat 87.8 12 0.00027 39.3 14.2 101 258-369 301-413 (441)
195 PRK06382 threonine dehydratase 87.3 3.1 6.6E-05 43.4 9.2 51 320-371 314-364 (406)
196 PLN02317 arogenate dehydratase 87.1 2.6 5.6E-05 43.5 8.2 56 338-394 284-354 (382)
197 PRK14630 hypothetical protein; 87.1 5.9 0.00013 35.2 9.5 89 268-362 6-97 (143)
198 TIGR01327 PGDH D-3-phosphoglyc 86.8 1.5 3.3E-05 47.4 6.7 63 337-401 451-513 (525)
199 PRK06349 homoserine dehydrogen 86.1 3.2 7E-05 43.6 8.6 65 337-405 348-412 (426)
200 cd04906 ACT_ThrD-I_1 First of 86.1 5.9 0.00013 31.6 8.3 60 261-327 3-63 (85)
201 PRK09034 aspartate kinase; Rev 85.8 15 0.00032 39.0 13.5 105 257-369 306-420 (454)
202 PRK06545 prephenate dehydrogen 85.6 2.6 5.6E-05 43.2 7.5 51 122-172 287-337 (359)
203 KOG2663 Acetolactate synthase, 85.1 1.1 2.4E-05 43.1 4.1 66 335-405 75-141 (309)
204 PRK14646 hypothetical protein; 84.7 11 0.00023 34.0 10.1 89 271-363 8-101 (155)
205 PRK14634 hypothetical protein; 84.7 10 0.00023 34.1 10.1 89 270-362 7-100 (155)
206 PLN02551 aspartokinase 84.6 34 0.00074 37.0 15.6 113 36-160 365-482 (521)
207 PRK09181 aspartate kinase; Val 84.1 11 0.00024 40.2 11.6 106 36-159 328-438 (475)
208 PRK11899 prephenate dehydratas 84.1 6.5 0.00014 38.9 9.2 52 125-178 194-246 (279)
209 PRK14636 hypothetical protein; 83.6 10 0.00022 34.9 9.7 79 268-348 3-86 (176)
210 COG0527 LysC Aspartokinases [A 83.3 40 0.00086 35.8 15.2 108 35-157 305-418 (447)
211 PRK08198 threonine dehydratase 83.3 7.6 0.00017 40.3 9.9 38 122-159 324-361 (404)
212 PRK12483 threonine dehydratase 83.1 39 0.00085 36.5 15.3 128 35-170 343-484 (521)
213 TIGR01127 ilvA_1Cterm threonin 83.0 7.9 0.00017 39.9 9.8 67 122-195 302-373 (380)
214 PRK09436 thrA bifunctional asp 82.8 18 0.0004 41.3 13.4 114 35-159 313-433 (819)
215 COG0077 PheA Prephenate dehydr 82.6 6.8 0.00015 38.7 8.6 50 124-173 193-243 (279)
216 PRK09084 aspartate kinase III; 82.6 17 0.00037 38.5 12.3 103 36-151 305-413 (448)
217 PRK08818 prephenate dehydrogen 82.1 3.2 6.9E-05 42.8 6.4 49 124-173 294-343 (370)
218 TIGR00657 asp_kinases aspartat 81.6 16 0.00034 38.5 11.6 108 36-157 301-413 (441)
219 PRK11898 prephenate dehydratas 81.5 6.1 0.00013 39.2 7.9 95 281-394 157-254 (283)
220 TIGR01268 Phe4hydrox_tetr phen 81.3 5.4 0.00012 41.8 7.7 53 337-390 16-69 (436)
221 PRK14645 hypothetical protein; 81.3 20 0.00044 32.2 10.5 89 270-362 9-102 (154)
222 PRK06349 homoserine dehydrogen 81.0 7.9 0.00017 40.7 9.0 52 122-173 345-396 (426)
223 COG0440 IlvH Acetolactate synt 80.6 21 0.00045 32.4 10.2 108 38-157 5-118 (163)
224 PRK13581 D-3-phosphoglycerate 80.5 3.7 8.1E-05 44.4 6.5 64 122-191 449-514 (526)
225 KOG2663 Acetolactate synthase, 79.9 3.8 8.2E-05 39.5 5.5 50 124-173 76-127 (309)
226 COG0440 IlvH Acetolactate synt 79.8 4.9 0.00011 36.4 5.9 64 337-405 4-68 (163)
227 cd04930 ACT_TH ACT domain of t 79.6 7.5 0.00016 33.2 6.8 49 125-173 41-90 (115)
228 PRK14640 hypothetical protein; 78.7 23 0.0005 31.7 10.0 87 272-364 8-99 (152)
229 TIGR01327 PGDH D-3-phosphoglyc 78.7 3.6 7.8E-05 44.5 5.7 63 123-191 449-513 (525)
230 TIGR01127 ilvA_1Cterm threonin 77.6 14 0.00031 38.0 9.5 50 321-371 290-339 (380)
231 PRK14647 hypothetical protein; 77.1 27 0.00058 31.5 10.0 85 272-362 10-99 (159)
232 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.8 26 0.00057 25.5 8.5 32 261-292 3-37 (66)
233 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.5 19 0.00041 26.3 7.6 34 127-160 3-39 (66)
234 cd04935 ACT_AKiii-DAPDC_1 ACT 76.2 14 0.00031 28.7 7.0 56 345-405 12-67 (75)
235 PRK14639 hypothetical protein; 76.0 25 0.00054 31.0 9.3 83 276-364 3-90 (140)
236 COG2150 Predicted regulator of 75.9 4.7 0.0001 36.3 4.6 34 38-71 96-129 (167)
237 PRK09084 aspartate kinase III; 75.8 30 0.00064 36.7 11.5 114 257-383 304-429 (448)
238 COG0527 LysC Aspartokinases [A 75.8 60 0.0013 34.4 13.7 113 257-384 305-429 (447)
239 TIGR01270 Trp_5_monoox tryptop 75.7 5.6 0.00012 41.9 5.9 52 337-389 31-84 (464)
240 PRK00092 ribosome maturation p 75.6 32 0.00069 30.8 10.1 73 272-348 9-86 (154)
241 cd04932 ACT_AKiii-LysC-EC_1 AC 75.0 22 0.00047 27.7 7.8 61 339-405 3-67 (75)
242 PRK08198 threonine dehydratase 74.1 21 0.00045 37.1 9.7 38 257-294 325-362 (404)
243 PRK12483 threonine dehydratase 73.9 97 0.0021 33.5 14.9 135 257-405 343-502 (521)
244 cd04919 ACT_AK-Hom3_2 ACT doma 73.8 28 0.00061 25.6 8.0 34 127-160 3-39 (66)
245 PRK14633 hypothetical protein; 73.1 42 0.0009 30.0 10.1 86 272-363 6-95 (150)
246 PRK14637 hypothetical protein; 72.8 39 0.00086 30.2 9.9 88 269-362 7-98 (151)
247 PLN02550 threonine dehydratase 72.4 1E+02 0.0022 34.0 14.6 124 37-169 417-553 (591)
248 PRK14638 hypothetical protein; 72.3 43 0.00094 29.9 10.0 86 272-362 10-100 (150)
249 cd04937 ACT_AKi-DapG-BS_2 ACT 72.2 27 0.00058 25.9 7.5 28 127-154 3-33 (64)
250 cd04913 ACT_AKii-LysC-BS-like_ 71.6 19 0.00041 26.8 6.7 41 132-172 9-50 (75)
251 PRK14643 hypothetical protein; 71.0 47 0.001 30.2 10.0 88 271-363 10-105 (164)
252 PRK08961 bifunctional aspartat 70.4 47 0.001 38.3 12.2 103 36-153 321-429 (861)
253 PRK10622 pheA bifunctional cho 69.7 27 0.00058 36.3 9.2 50 124-173 296-346 (386)
254 PRK14631 hypothetical protein; 69.4 56 0.0012 30.0 10.3 89 271-363 9-118 (174)
255 cd04891 ACT_AK-LysC-DapG-like_ 69.4 16 0.00034 25.9 5.6 42 132-173 8-50 (61)
256 PRK10820 DNA-binding transcrip 68.6 6.1 0.00013 42.6 4.4 36 339-374 2-37 (520)
257 COG2150 Predicted regulator of 68.3 8.2 0.00018 34.8 4.4 34 126-159 96-129 (167)
258 cd04924 ACT_AK-Arch_2 ACT doma 68.1 41 0.0009 24.4 7.8 34 127-160 3-39 (66)
259 cd04937 ACT_AKi-DapG-BS_2 ACT 68.0 46 0.001 24.6 8.5 28 261-288 3-33 (64)
260 cd04912 ACT_AKiii-LysC-EC-like 67.7 40 0.00086 25.9 7.8 62 339-405 3-67 (75)
261 PRK09224 threonine dehydratase 67.4 80 0.0017 34.0 12.6 117 36-159 327-456 (504)
262 COG3978 Acetolactate synthase 67.3 18 0.00038 28.8 5.5 47 337-383 3-51 (86)
263 PRK08526 threonine dehydratase 67.3 36 0.00077 35.5 9.6 67 122-195 323-394 (403)
264 PRK14632 hypothetical protein; 66.9 59 0.0013 29.8 9.9 85 272-362 10-98 (172)
265 cd04919 ACT_AK-Hom3_2 ACT doma 66.9 48 0.001 24.3 8.6 34 261-294 3-39 (66)
266 cd04868 ACT_AK-like ACT domain 66.1 11 0.00023 26.4 4.1 33 127-159 2-37 (60)
267 PRK09224 threonine dehydratase 65.7 2E+02 0.0043 31.0 15.6 107 258-371 327-456 (504)
268 cd04912 ACT_AKiii-LysC-EC-like 64.3 62 0.0013 24.8 8.3 63 126-195 2-67 (75)
269 COG0779 Uncharacterized protei 63.1 69 0.0015 28.8 9.3 75 271-349 9-88 (153)
270 PRK08961 bifunctional aspartat 62.4 81 0.0018 36.4 12.1 116 257-383 320-443 (861)
271 PRK14644 hypothetical protein; 62.0 73 0.0016 28.0 9.1 64 278-348 6-74 (136)
272 COG4492 PheB ACT domain-contai 61.9 35 0.00075 29.9 6.8 47 337-383 72-119 (150)
273 PRK09466 metL bifunctional asp 61.7 2.1E+02 0.0046 32.8 15.1 104 36-156 316-425 (810)
274 cd04892 ACT_AK-like_2 ACT doma 60.1 58 0.0013 23.0 7.3 32 127-158 2-36 (65)
275 cd04932 ACT_AKiii-LysC-EC_1 AC 59.9 14 0.00031 28.8 3.9 44 126-173 2-48 (75)
276 cd04916 ACT_AKiii-YclM-BS_2 AC 59.9 64 0.0014 23.4 7.6 34 127-160 3-39 (66)
277 PRK08526 threonine dehydratase 59.7 94 0.002 32.4 11.1 82 320-406 310-395 (403)
278 cd04868 ACT_AK-like ACT domain 59.4 20 0.00043 25.0 4.4 31 339-369 2-35 (60)
279 PF04083 Abhydro_lipase: Parti 59.3 26 0.00056 26.5 5.0 33 55-87 2-34 (63)
280 PLN02550 threonine dehydratase 59.3 2.8E+02 0.0061 30.6 17.4 127 123-291 415-543 (591)
281 COG4492 PheB ACT domain-contai 59.2 63 0.0014 28.3 7.9 52 122-173 69-121 (150)
282 PF02576 DUF150: Uncharacteris 59.0 49 0.0011 29.0 7.6 69 276-348 2-75 (141)
283 PTZ00324 glutamate dehydrogena 58.9 79 0.0017 36.8 10.9 80 23-102 215-299 (1002)
284 PF05088 Bac_GDH: Bacterial NA 57.9 77 0.0017 38.8 11.1 84 23-106 473-563 (1528)
285 PRK08841 aspartate kinase; Val 57.9 82 0.0018 32.7 10.3 95 257-369 256-350 (392)
286 PF05088 Bac_GDH: Bacterial NA 57.8 4.5E+02 0.0098 32.5 20.5 177 23-200 327-568 (1528)
287 cd04890 ACT_AK-like_1 ACT doma 57.8 70 0.0015 23.2 7.4 51 345-403 11-61 (62)
288 TIGR02079 THD1 threonine dehyd 57.7 72 0.0016 33.3 9.9 67 122-195 322-390 (409)
289 PRK11898 prephenate dehydratas 57.7 51 0.0011 32.6 8.3 65 260-327 197-263 (283)
290 PRK09466 metL bifunctional asp 57.7 1.5E+02 0.0032 34.0 13.0 101 257-368 315-425 (810)
291 cd04891 ACT_AK-LysC-DapG-like_ 56.6 26 0.00056 24.7 4.6 41 44-84 8-49 (61)
292 cd04890 ACT_AK-like_1 ACT doma 55.5 72 0.0016 23.1 7.0 37 133-173 11-47 (62)
293 PRK08841 aspartate kinase; Val 55.2 1.5E+02 0.0033 30.7 11.7 85 49-157 266-350 (392)
294 cd04935 ACT_AKiii-DAPDC_1 ACT 55.1 76 0.0017 24.6 7.3 57 132-195 11-67 (75)
295 cd04913 ACT_AKii-LysC-BS-like_ 54.9 16 0.00035 27.2 3.4 30 340-369 4-34 (75)
296 TIGR01270 Trp_5_monoox tryptop 54.6 45 0.00098 35.3 7.6 52 259-311 31-84 (464)
297 cd04936 ACT_AKii-LysC-BS-like_ 54.4 76 0.0017 22.6 7.1 31 127-157 2-35 (63)
298 PRK08639 threonine dehydratase 54.2 72 0.0016 33.4 9.2 68 122-195 333-401 (420)
299 cd04933 ACT_AK1-AT_1 ACT domai 53.1 58 0.0013 25.6 6.4 57 345-405 12-70 (78)
300 COG3283 TyrR Transcriptional r 52.5 42 0.00092 34.6 6.7 36 339-374 2-37 (511)
301 cd04924 ACT_AK-Arch_2 ACT doma 51.6 89 0.0019 22.5 8.6 34 261-294 3-39 (66)
302 PRK10820 DNA-binding transcrip 51.4 18 0.0004 39.0 4.4 35 127-161 2-36 (520)
303 cd04923 ACT_AK-LysC-DapG-like_ 50.9 88 0.0019 22.2 7.2 31 127-157 2-35 (63)
304 cd04934 ACT_AK-Hom3_1 CT domai 50.1 64 0.0014 24.9 6.1 54 345-405 12-65 (73)
305 PRK00907 hypothetical protein; 49.8 55 0.0012 26.8 5.9 64 38-107 18-85 (92)
306 PLN02317 arogenate dehydratase 46.5 1.1E+02 0.0024 31.7 8.9 37 125-161 283-319 (382)
307 cd04920 ACT_AKiii-DAPDC_2 ACT 46.5 1.1E+02 0.0025 22.5 6.9 27 127-153 2-31 (63)
308 TIGR02079 THD1 threonine dehyd 46.3 1.2E+02 0.0027 31.6 9.4 78 257-346 323-401 (409)
309 TIGR01124 ilvA_2Cterm threonin 45.7 1.2E+02 0.0026 32.6 9.4 66 122-195 322-387 (499)
310 PRK14635 hypothetical protein; 45.5 1.7E+02 0.0036 26.5 9.0 91 268-365 4-102 (162)
311 cd07940 DRE_TIM_IPMS 2-isoprop 43.8 2E+02 0.0043 27.9 10.0 89 269-377 141-229 (268)
312 cd04918 ACT_AK1-AT_2 ACT domai 43.2 1.3E+02 0.0029 22.2 8.4 43 261-305 3-47 (65)
313 cd04916 ACT_AKiii-YclM-BS_2 AC 42.7 1.3E+02 0.0028 21.7 8.5 33 261-293 3-38 (66)
314 PRK14641 hypothetical protein; 41.6 2.4E+02 0.0053 25.8 9.5 76 281-362 20-104 (173)
315 KOG2797 Prephenate dehydratase 41.4 1.9E+02 0.0042 29.1 9.1 132 266-401 189-354 (377)
316 cd04921 ACT_AKi-HSDH-ThrA-like 40.9 1.2E+02 0.0025 23.1 6.4 35 126-160 2-39 (80)
317 PRK05925 aspartate kinase; Pro 39.3 4.9E+02 0.011 27.5 12.6 102 37-155 300-404 (440)
318 cd04915 ACT_AK-Ectoine_2 ACT d 38.8 85 0.0018 23.5 5.1 42 339-383 4-48 (66)
319 cd04933 ACT_AK1-AT_1 ACT domai 38.7 29 0.00062 27.4 2.6 26 132-157 11-36 (78)
320 cd04918 ACT_AK1-AT_2 ACT domai 38.4 1.6E+02 0.0035 21.7 7.7 35 127-161 3-39 (65)
321 cd04892 ACT_AK-like_2 ACT doma 38.0 1.4E+02 0.003 20.9 8.1 31 261-291 2-35 (65)
322 TIGR01268 Phe4hydrox_tetr phen 38.0 99 0.0021 32.6 7.0 49 125-173 16-65 (436)
323 cd07247 SgaA_N_like N-terminal 37.2 1.3E+02 0.0028 24.2 6.5 51 35-91 60-110 (114)
324 cd04921 ACT_AKi-HSDH-ThrA-like 37.2 1.8E+02 0.004 22.0 8.7 33 261-293 3-38 (80)
325 cd07939 DRE_TIM_NifV Streptomy 36.4 3E+02 0.0064 26.6 9.9 86 269-377 137-222 (259)
326 PRK08639 threonine dehydratase 36.2 2.2E+02 0.0048 29.8 9.5 66 257-327 334-400 (420)
327 COG3978 Acetolactate synthase 36.0 1.5E+02 0.0032 23.7 5.9 46 38-83 4-51 (86)
328 cd07943 DRE_TIM_HOA 4-hydroxy- 35.3 2.6E+02 0.0057 27.0 9.3 90 266-377 136-225 (263)
329 PRK14634 hypothetical protein; 34.8 3.4E+02 0.0073 24.3 9.2 77 48-134 7-84 (155)
330 cd04936 ACT_AKii-LysC-BS-like_ 34.4 86 0.0019 22.3 4.5 31 339-369 2-35 (63)
331 PRK12331 oxaloacetate decarbox 34.4 4.8E+02 0.01 27.7 11.6 88 269-379 152-239 (448)
332 PRK14645 hypothetical protein; 34.0 3.5E+02 0.0076 24.3 9.2 95 46-150 7-102 (154)
333 cd07944 DRE_TIM_HOA_like 4-hyd 33.8 2.5E+02 0.0055 27.4 8.9 88 269-377 136-223 (266)
334 TIGR01124 ilvA_2Cterm threonin 33.6 2.4E+02 0.0052 30.4 9.4 105 258-370 324-451 (499)
335 PRK14040 oxaloacetate decarbox 33.6 3.2E+02 0.0069 30.2 10.5 90 267-379 151-240 (593)
336 cd07941 DRE_TIM_LeuA3 Desulfob 33.3 2.5E+02 0.0053 27.5 8.8 91 267-379 147-237 (273)
337 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.7 2.4E+02 0.0052 27.6 8.6 88 269-379 147-234 (275)
338 PRK02001 hypothetical protein; 32.6 3.1E+02 0.0068 24.5 8.5 77 277-362 12-90 (152)
339 cd04914 ACT_AKi-DapG-BS_1 ACT 31.8 75 0.0016 23.9 3.8 30 127-156 3-33 (67)
340 PRK02047 hypothetical protein; 31.6 2E+02 0.0044 23.3 6.5 64 38-107 17-84 (91)
341 COG3283 TyrR Transcriptional r 31.3 1.1E+02 0.0024 31.6 5.9 33 127-159 2-34 (511)
342 cd07261 Glo_EDI_BRP_like_11 Th 29.8 1.1E+02 0.0025 24.5 5.0 52 36-91 59-110 (114)
343 PRK00907 hypothetical protein; 29.7 1.5E+02 0.0033 24.2 5.5 62 260-327 18-83 (92)
344 PRK14042 pyruvate carboxylase 28.4 4.4E+02 0.0096 29.1 10.4 87 268-377 151-237 (596)
345 cd04911 ACT_AKiii-YclM-BS_1 AC 28.3 2.2E+02 0.0047 22.4 5.9 56 346-408 13-72 (76)
346 PRK12330 oxaloacetate decarbox 28.3 6.6E+02 0.014 27.1 11.5 92 265-377 149-240 (499)
347 cd04923 ACT_AK-LysC-DapG-like_ 27.8 2.2E+02 0.0048 20.0 8.4 30 262-291 3-35 (63)
348 cd07247 SgaA_N_like N-terminal 27.7 2E+02 0.0044 22.9 6.2 50 258-313 61-110 (114)
349 cd07945 DRE_TIM_CMS Leptospira 27.5 4.5E+02 0.0099 25.8 9.6 117 267-405 143-267 (280)
350 PRK14636 hypothetical protein; 27.2 4.5E+02 0.0098 24.1 8.8 77 48-134 5-82 (176)
351 PRK05692 hydroxymethylglutaryl 26.5 5.8E+02 0.013 25.2 10.1 85 269-375 153-237 (287)
352 TIGR03217 4OH_2_O_val_ald 4-hy 26.5 3.3E+02 0.0072 27.6 8.6 90 269-379 141-230 (333)
353 COG2061 ACT-domain-containing 26.3 4.9E+02 0.011 23.5 8.9 78 255-368 1-79 (170)
354 cd03174 DRE_TIM_metallolyase D 26.2 5.3E+02 0.012 24.4 9.7 89 267-377 142-230 (265)
355 PRK00341 hypothetical protein; 24.9 2.9E+02 0.0063 22.4 6.3 63 38-107 18-84 (91)
356 cd04910 ACT_AK-Ectoine_1 ACT d 24.5 3.4E+02 0.0073 21.0 7.9 60 127-198 3-65 (71)
357 PRK14642 hypothetical protein; 24.5 5.9E+02 0.013 23.9 9.2 85 272-363 3-101 (197)
358 cd04914 ACT_AKi-DapG-BS_1 ACT 24.3 1.2E+02 0.0027 22.7 3.9 30 339-368 3-33 (67)
359 cd04915 ACT_AK-Ectoine_2 ACT d 24.1 3E+02 0.0066 20.4 6.6 32 260-291 3-36 (66)
360 PF09383 NIL: NIL domain; Int 23.5 3.3E+02 0.0073 20.6 9.1 61 261-327 6-67 (76)
361 cd07245 Glo_EDI_BRP_like_9 Thi 23.5 1.4E+02 0.0031 23.2 4.4 49 36-91 64-112 (114)
362 cd04934 ACT_AK-Hom3_1 CT domai 23.4 69 0.0015 24.7 2.3 54 133-195 12-65 (73)
363 PRK14646 hypothetical protein; 22.9 5.5E+02 0.012 22.9 9.1 92 49-150 8-100 (155)
364 PF01709 Transcrip_reg: Transc 22.5 3.5E+02 0.0075 26.0 7.4 105 33-159 88-196 (234)
365 PTZ00324 glutamate dehydrogena 22.4 6E+02 0.013 29.9 10.3 60 131-191 239-299 (1002)
366 PRK14639 hypothetical protein; 22.3 5.4E+02 0.012 22.6 8.2 87 54-152 3-90 (140)
367 PRK08195 4-hyroxy-2-oxovalerat 21.6 3.9E+02 0.0084 27.1 8.0 91 268-379 141-231 (337)
368 PRK12581 oxaloacetate decarbox 21.6 9.5E+02 0.021 25.7 11.0 87 270-379 162-248 (468)
369 COG3603 Uncharacterized conser 21.4 2.7E+02 0.0058 24.0 5.5 47 268-329 75-122 (128)
370 TIGR01108 oadA oxaloacetate de 21.0 6.7E+02 0.014 27.6 10.1 113 269-405 147-267 (582)
371 PRK14633 hypothetical protein; 20.7 6E+02 0.013 22.5 9.1 91 50-152 6-96 (150)
372 PF04083 Abhydro_lipase: Parti 20.5 2.7E+02 0.0059 20.9 5.0 33 277-309 2-34 (63)
373 PRK14041 oxaloacetate decarbox 20.4 6.6E+02 0.014 26.9 9.6 88 269-379 151-238 (467)
374 cd07253 Glo_EDI_BRP_like_2 Thi 20.4 2E+02 0.0043 23.1 4.7 50 39-91 70-120 (125)
375 cd07938 DRE_TIM_HMGL 3-hydroxy 20.1 8.2E+02 0.018 23.9 10.0 85 269-375 147-231 (274)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6.5e-27 Score=261.00 Aligned_cols=174 Identities=24% Similarity=0.335 Sum_probs=147.5
Q ss_pred hcCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHH
Q 013090 21 RMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDY 99 (449)
Q Consensus 21 ~~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ 99 (449)
...+|.|.+++++..++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+++ ++.++.
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 3457899999999999999999999999999999999999999999999987 89999999999999999885 444444
Q ss_pred HHH----Hhccccccc----CC--------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 100 IRK----CLGPEACFA----SS--------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 100 I~~----~L~~~~~~~----~~--------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
|++ +|.+..... .+ +.+|. ++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|+|.
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 554 444332110 01 12344 4677899999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 162 NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 162 ~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
|++|+|+|||++ .+|.++.++++ +.|+++|..+|
T Consensus 820 gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 820 GEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred CceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999 48899987666 99999987765
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=9.8e-27 Score=260.43 Aligned_cols=174 Identities=22% Similarity=0.284 Sum_probs=148.6
Q ss_pred CCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHH----H
Q 013090 23 NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGI----L 97 (449)
Q Consensus 23 ~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~----~ 97 (449)
.+|.|.+++.++.++|+|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++++ +. .
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence 57899999999999999999999999999999999999999999999986 678999999999999998753 34 4
Q ss_pred HHHHHHhcccccc-----cCC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC
Q 013090 98 DYIRKCLGPEACF-----ASS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN 162 (449)
Q Consensus 98 ~~I~~~L~~~~~~-----~~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~ 162 (449)
+.|+++|.+.... ..+ +.+|.+ +.+..+|+|+|.++||||||++|+++|.++|++|++|+|+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 4555555443211 001 123444 6788999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090 163 TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 163 ~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
++|+|+|||++ .+|.+++ +++.+.|+++|..+|..
T Consensus 846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999 4788887 68889999999988865
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.2e-26 Score=256.82 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=157.6
Q ss_pred eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
.++++.++|.|+|.++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||+++ +|.++. ++++++|++.|.++
T Consensus 670 ~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l~~~L~~a 747 (854)
T PRK01759 670 SNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQLEQALTKA 747 (854)
T ss_pred EecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHHHHHHHHH
Confidence 3466778999999999999999999999999999999999988 89999999999995 788885 67899999999999
Q ss_pred ccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHH
Q 013090 197 LKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDT 276 (449)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i 276 (449)
|.++.... ... ++.. . ...+..+|.|.|+|+.+..+|+|+|.++|||||||+|
T Consensus 748 L~~~~~~~---~~~--------~~~~-------~---------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I 800 (854)
T PRK01759 748 LNTNKLKK---LNL--------EENH-------K---------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQV 800 (854)
T ss_pred HcCCCCcc---hhc--------cccc-------c---------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHH
Confidence 98754321 000 0000 0 0134577999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 277 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 277 ~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
+++|.++|++|+.|+|+|.|++|.|+|||++.+|.+++++.+ ++|+++|.++|
T Consensus 801 ~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 801 SQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999999999999999999999987544 89999998876
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=6.3e-26 Score=253.94 Aligned_cols=184 Identities=21% Similarity=0.250 Sum_probs=157.9
Q ss_pred ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 119 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 119 ~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
+.++.+++.|+|.++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|+++ +|.++. ++++++|++.|.++|
T Consensus 695 ~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I~~~L~~aL 772 (884)
T PRK05007 695 KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVIRKALEQAL 772 (884)
T ss_pred ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999985 5699999999994 788874 678999999999999
Q ss_pred cCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHH
Q 013090 198 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTV 277 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~ 277 (449)
.+..... . . .+|.. +. ...+..+|.|.|+|+.++.+|+|+|.++||||||++|+
T Consensus 773 ~~~~~~~---~-~-------~~~~~------~~---------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~ 826 (884)
T PRK05007 773 TQSSPQP---P-K-------PRRLP------AK---------LRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVG 826 (884)
T ss_pred cCCCCCc---c-c-------ccccc------cc---------cCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence 8754321 1 1 11110 00 01345789999999999999999999999999999999
Q ss_pred HHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 278 CTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 278 ~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
++|.++|++|+.|+|+|.|++|.|+|||++.+|.+++ +++.+.|+++|.+++.
T Consensus 827 ~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 827 KIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred HHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997 5678999999998885
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=250.56 Aligned_cols=177 Identities=23% Similarity=0.395 Sum_probs=147.5
Q ss_pred CCCEEEEecCCC---CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-ChHHH
Q 013090 23 NPPRVVIDNEAC---KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKIT-DEGIL 97 (449)
Q Consensus 23 ~~p~V~i~~~~~---~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~-~~~~~ 97 (449)
..|.|.+.+... .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. +++.+
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 457888877765 58999999999999999999999999999999999975 79999999999999999854 34455
Q ss_pred HHHHHHh----cccccc------cCC--------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEE
Q 013090 98 DYIRKCL----GPEACF------ASS--------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 98 ~~I~~~L----~~~~~~------~~~--------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
+.|++.| .+.... ..+ ...|. ++.+.++|+|+|.++||||||++|+++|+.+|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 5555544 433210 001 11233 366778999999999999999999999999999999999
Q ss_pred EEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 013090 158 VWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 200 (449)
Q Consensus 158 i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 200 (449)
|+|.|++++|+|||+++ +|.++.+++++++|+++|.++|...
T Consensus 847 I~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 847 IATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999994 8889988889999999999998664
No 6
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=5.9e-25 Score=246.17 Aligned_cols=183 Identities=21% Similarity=0.308 Sum_probs=157.1
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCC-CHHHHHHHHHHhcccccCc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAIS-DPERLSVIKELLCNVLKGS 200 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~-~~~~~~~l~~~L~~~L~~~ 200 (449)
.+.+.|.|.++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++. +++++++|++.|.++|.++
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999977 67899999999995 777754 4589999999999999886
Q ss_pred cccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHH
Q 013090 201 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL 280 (449)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L 280 (449)
.+.. ..+ .+|.. +.. ..+..+|.|.++|..+.++|+|+|+++||||||++|+++|
T Consensus 781 ~~~~---~~~-------~~~~~------~~~---------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L 835 (895)
T PRK00275 781 DDYP---TII-------QRRVP------RQL---------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF 835 (895)
T ss_pred Cccc---hhh-------hhhhh------hhc---------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence 5421 212 12210 000 1335679999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 281 TDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 281 ~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
.++|+||++|+|+|.|++++|+|||++.+|.++.++.++++|++.|.++|.
T Consensus 836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999877788999999999985
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=5.2e-24 Score=238.93 Aligned_cols=186 Identities=23% Similarity=0.332 Sum_probs=158.0
Q ss_pred cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE-ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~-T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
....+.|.|+|.++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||+++ +|.++.+++++++|++.|.++|.
T Consensus 663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHc
Confidence 3447899999999999999999999999999999999999 589999999999994 78888877889999999999998
Q ss_pred CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090 199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC 278 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~ 278 (449)
+.... ...+. +|..+ .+. ...+..+|.|.|+|..++.+|+|+|.|+||||||++|++
T Consensus 742 ~~~~~---~~~~~-------~~~~~----~~~---------~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~ 798 (850)
T TIGR01693 742 GLAKD---PDTIS-------ARRAR----RRR---------LQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798 (850)
T ss_pred CCCcc---ccccc-------cccCC----ccc---------ccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHH
Confidence 75432 11111 11000 000 013457799999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
+|.++|++|++|+|.|.|+++.|+|||++..|.++++ .+.+.|+++|.+++
T Consensus 799 ~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 799 TLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987 68899999998876
No 8
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=4e-24 Score=238.22 Aligned_cols=174 Identities=25% Similarity=0.323 Sum_probs=142.9
Q ss_pred CCCEEEEec-CCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCC-hHHHHH
Q 013090 23 NPPRVVIDN-EACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITD-EGILDY 99 (449)
Q Consensus 23 ~~p~V~i~~-~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~~ 99 (449)
..|.|.+.. .+..+.++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|..... ..+.+.
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence 457776655 66778999999999999999999999999999999999986 899999999999998874211 235566
Q ss_pred HHHHhcccccc-----c-CC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC
Q 013090 100 IRKCLGPEACF-----A-SS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT 163 (449)
Q Consensus 100 I~~~L~~~~~~-----~-~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~ 163 (449)
|+++|.+.... + .+ +.+|.+ +.+..+|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|+
T Consensus 755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~ 834 (869)
T PRK04374 755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE 834 (869)
T ss_pred HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence 66677653220 0 11 123443 66778999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 164 RAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 164 ~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
+++|+|||+++ +|.++.++++ +.|+++|.++|.
T Consensus 835 ~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 835 RAEDQFQITDE-HDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred EEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999994 7888776666 999999988774
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.92 E-value=4.4e-24 Score=239.47 Aligned_cols=174 Identities=25% Similarity=0.302 Sum_probs=147.2
Q ss_pred cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHH
Q 013090 22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYI 100 (449)
Q Consensus 22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I 100 (449)
.+.|.|.+++....++|+|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++++|.++.+++.++.|
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 34689999987778999999999999999999999999999999999998 68999999999999999988776545544
Q ss_pred H----HHhcccccc------c--CC--------cceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEE
Q 013090 101 R----KCLGPEACF------A--SS--------MRSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV 158 (449)
Q Consensus 101 ~----~~L~~~~~~------~--~~--------~~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i 158 (449)
+ ++|.+.... . .+ ..+|.+ +.+..+|+|+|.|+||||||++|+++|+++|+||++|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 4 455442210 0 01 113444 677889999999999999999999999999999999999
Q ss_pred EccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 159 WTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 159 ~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
.|.++++.|+|||++ ..|.|+.+ ++++.|+++|..+|
T Consensus 813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999998 47888886 78899999987765
No 10
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-24 Score=228.37 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=147.2
Q ss_pred CCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHH
Q 013090 244 KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERV 322 (449)
Q Consensus 244 ~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l 322 (449)
...|.|.+.+....+.|.|+|+++|+|.||+.++.++...|+||++|+|.|+ +|+++|+|+|.+++|.++. +.+...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 4568899888888899999999999999999999999999999999999999 8999999999999999997 4688888
Q ss_pred HHHHHHHHhh---------cc----------C----------CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec
Q 013090 323 IQCLKAAIER---------RV----------S----------EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK 373 (449)
Q Consensus 323 ~~~L~~~l~~---------r~----------~----------~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~ 373 (449)
+..|.+++.. +. | +.|.|||++.||||||++|+++|.+++++|++|+|+|+
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 8888888841 10 1 15999999999999999999999999999999999999
Q ss_pred CCceeeEEEEEcCCCCCCCHHHHHHHHHHhcccee
Q 013090 374 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 408 (449)
Q Consensus 374 g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~~~ 408 (449)
||+++|+|+|++..|++++.+....+.+.+.++++
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~ 862 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998877788888877554
No 11
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2e-23 Score=235.77 Aligned_cols=188 Identities=21% Similarity=0.400 Sum_probs=160.2
Q ss_pred cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
.+..+.+.|+|.++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++.+++++++|++.|..++.
T Consensus 727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~~~l~ 805 (931)
T PRK05092 727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDALS 805 (931)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHc
Confidence 55668999999999999999999999999999999999998 78899999999984 77777778899999999999998
Q ss_pred CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090 199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC 278 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~ 278 (449)
++.... ..+ .+|.. . ......+..+|.|.|+|..+.++|+|+|+++||||||++|++
T Consensus 806 ~~~~~~---~~~-------~~r~~-------~------~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~ 862 (931)
T PRK05092 806 GEVRLP---EAL-------AKRTK-------P------KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTR 862 (931)
T ss_pred CCCCCc---ccc-------ccccC-------c------cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHH
Confidence 754331 111 11100 0 000013456799999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
+|+++|+||.+|+|.|.|+++.|+|||++.+|.++.++++++.|++.|.++|.
T Consensus 863 ~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 863 ALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred HHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887788999999999995
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=7.3e-24 Score=234.42 Aligned_cols=169 Identities=22% Similarity=0.249 Sum_probs=143.8
Q ss_pred cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHH
Q 013090 22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIR 101 (449)
Q Consensus 22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~ 101 (449)
..+|.|.+.+.. .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.+++|.+...+.+.+.|+
T Consensus 585 ~~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~ 663 (774)
T PRK03381 585 DGGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLR 663 (774)
T ss_pred cCCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHH
Confidence 367899998888 8999999999999999999999999999999999999999999999999999988655556777888
Q ss_pred HHhcccccc------c--C--Cc--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 102 KCLGPEACF------A--S--SM--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 102 ~~L~~~~~~------~--~--~~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
++|.+.... . . ++ ..|.+ +.+.++|+|+|.++||||||++|+++|+.+|+||++|+|+|.
T Consensus 664 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 664 RALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred HHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 888764220 0 0 01 12333 556678999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090 162 NTRAAALMQVTDEETGGAISDPERLSVIKELLC 194 (449)
Q Consensus 162 ~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (449)
|++++|+|||+++ +|.+++++ ++.|+++|.
T Consensus 744 g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 744 GADVVDVFYVTGA-AGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CCeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence 9999999999994 88888764 788887763
No 13
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=6.2e-24 Score=237.03 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=140.5
Q ss_pred cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHH
Q 013090 22 MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYI 100 (449)
Q Consensus 22 ~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I 100 (449)
.+.|.|.+.+.+..+.++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..+++.++.|
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i 741 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV 741 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence 346888898888889999999999999999999999999999999999975 89999999999998888 3344444544
Q ss_pred ----HHHhcccccc------cCCc--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 101 ----RKCLGPEACF------ASSM--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 101 ----~~~L~~~~~~------~~~~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
+++|.+.... +.++ ..|.+ +++.++|+|+|.++||||||++||++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 4555443211 0111 12333 56678999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 161 HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 161 ~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
.|++++|+|||++ .++.+++++++|++.|.++|.
T Consensus 822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999965 224567899999999887664
No 14
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=234.28 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=152.9
Q ss_pred cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
.+..+.+.|.|.++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.++ .|.+ .+++.++++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 44568899999999999999999999999999999999998 78999999999985 5553 3568889999999998
Q ss_pred CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090 199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC 278 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~ 278 (449)
++.... . +. +|.. .+. ...+..+|.|.++|..+.++|+|+|+++||||||++|++
T Consensus 761 ~~~~~~---~-~~-------~~~~-----~~~---------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~ 815 (869)
T PRK04374 761 GDLQKV---R-PA-------RRAV-----PRQ---------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH 815 (869)
T ss_pred CCCCcc---c-cc-------cccC-----ccc---------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence 864321 1 11 1100 000 014467899999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
+|+++|++|+.|+|+|.|+++.|+|||++.+|.++.++++ ++|++.|.++|.
T Consensus 816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999998866544 899999988874
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=2.2e-23 Score=235.41 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=150.7
Q ss_pred CCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHH
Q 013090 23 NPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIR 101 (449)
Q Consensus 23 ~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~ 101 (449)
.++.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 55788899988889999999999999999999999999999999999986 79999999999999998876665666655
Q ss_pred HHhccccc----c------c-CC---------cceee--ccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 102 KCLGPEAC----F------A-SS---------MRSVG--VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 102 ~~L~~~~~----~------~-~~---------~~~V~--~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
+.|...+. . . .+ ...|. ++.+..+|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 55543321 0 0 11 01233 35677889999999999999999999999999999999999
Q ss_pred ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 013090 160 THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 200 (449)
Q Consensus 160 T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 200 (449)
|.++++.|+|||++. +|.++.++++++.|++.|.++|.++
T Consensus 878 T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 878 TYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred EcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999994 7889988888999999999999764
No 16
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=5.8e-23 Score=229.27 Aligned_cols=182 Identities=18% Similarity=0.271 Sum_probs=150.8
Q ss_pred cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
.+..+.+.|.|+++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.++ +|. ...++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence 45668899999999999999999999999999999999987 78999999999985 454 4456899999999999998
Q ss_pred CccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHH
Q 013090 199 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC 278 (449)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~ 278 (449)
++.+.. ... .+|.. +. ...+..+|.|.+++..+.++|+|+|+++||||||++|++
T Consensus 751 ~~~~~~---~~~-------~~~~~------~~---------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~ 805 (856)
T PRK03059 751 EQAPLP---EPS-------KGRLS------RQ---------VKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR 805 (856)
T ss_pred CCCCcc---hhh-------ccccc------cc---------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence 865321 111 11100 00 013467789999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 279 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 279 ~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
+|+.+|+||+.|+|+|.|+++.|+|||. +.++.+++++++|++.|.++|+
T Consensus 806 ~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 806 VLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999994 3445566788999999988763
No 17
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=4.7e-23 Score=228.03 Aligned_cols=179 Identities=21% Similarity=0.255 Sum_probs=145.3
Q ss_pred cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090 120 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
.+ .+.+.|.|+|+||||||++||++|+.+||||++|+|+|.+|.+.|+|+|+++ .|.+. .++++++.|.++|.+
T Consensus 595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG 668 (774)
T ss_pred CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence 44 6889999999999999999999999999999999999999999999999985 56543 258899999999988
Q ss_pred ccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHH
Q 013090 200 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCT 279 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~ 279 (449)
+.... ..+ .+|.. .+. .+ ....+..+|.|.++|..+.++|+|+|+++||||||++|+++
T Consensus 669 ~~~~~---~~~-------~~~~~-~~~-~~---------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~ 727 (774)
T PRK03381 669 DLDVL---ARL-------AAREA-AAA-AV---------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARA 727 (774)
T ss_pred CCchh---hhh-------hcccc-ccc-cc---------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHH
Confidence 53320 111 01100 000 00 00134577899999999999999999999999999999999
Q ss_pred HHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 280 LTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 280 L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
|+++|+||++|+|+|.|++++|+|||++.+|.++.++ .+.|+++|.
T Consensus 728 L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 728 LERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 9999999999999999999999999999999999763 667776663
No 18
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-23 Score=219.90 Aligned_cols=178 Identities=25% Similarity=0.326 Sum_probs=143.5
Q ss_pred HHHh-cCCCEEEEecCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChH
Q 013090 18 LIRR-MNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEG 95 (449)
Q Consensus 18 l~~~-~~~p~V~i~~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~ 95 (449)
+... .++|.|.+.+....+.|+|+|+++|+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. ++
T Consensus 664 l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~d 742 (867)
T COG2844 664 LVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-ED 742 (867)
T ss_pred HHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hh
Confidence 3444 577999988888889999999999999999999999999999999999985 89999999999999999887 44
Q ss_pred HHHHHHHHhccccc---ccCC------c--------ceeec--cCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEE
Q 013090 96 ILDYIRKCLGPEAC---FASS------M--------RSVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 96 ~~~~I~~~L~~~~~---~~~~------~--------~~V~~--~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A 156 (449)
+...++..|.+... ..++ + ..|.+ +.+...|+|+|.+.||||||++++++|++++++|++|
T Consensus 743 r~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~A 822 (867)
T COG2844 743 RRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSA 822 (867)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeee
Confidence 55555554443321 1111 1 12444 5667899999999999999999999999999999999
Q ss_pred EEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 157 EVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 157 ~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
+|+|.|++|+|+|||++. .|.++.. +....+.+.|.+++.
T Consensus 823 kItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~~ll~al~ 862 (867)
T COG2844 823 KITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQRLLEALL 862 (867)
T ss_pred eeccccccceeEEEEecc-ccccCCH-HHHHHHHHHHHHHhc
Confidence 999999999999999994 7888854 444555555544443
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=7e-20 Score=143.60 Aligned_cols=75 Identities=67% Similarity=1.153 Sum_probs=72.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR 333 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r 333 (449)
||+|+|.|+|||||||+|+++|.++|++|++|+|+|.|++|.|+|||++.+|.|+.++.+.+.|+++|.++++||
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999888999999999999864
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=1.3e-17 Score=130.80 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=69.4
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
+|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.+++++++|+++|.+++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999 589999999999999999988775
No 21
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.73 E-value=2.7e-17 Score=128.11 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=65.4
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC 194 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (449)
+|+|+|.++||||||++|+++|+++|++|++|+|.|.|++++|+|||++ .+|.|+.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 48999999999999998874
No 22
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.72 E-value=6.9e-17 Score=149.58 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=112.1
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090 256 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE---- 331 (449)
Q Consensus 256 ~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~---- 331 (449)
+..+.+|+|.|+|||||++.++++|+++||||.+++++..|+++.-.+.| .|.+. ..+.|+..|...-+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~~----~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSWN----AITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCChh----HHHHHHHHHHhhhhhcCe
Confidence 45778999999999999999999999999999999999998877655655 34433 44556655544321
Q ss_pred ----hcc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC--ceeeEEEEEcCCCCCCCHHHHH
Q 013090 332 ----RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIID 397 (449)
Q Consensus 332 ----~r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~--~~~d~F~v~~~~g~p~~~~~~~ 397 (449)
++. +.++.++|.+.|||||+++||++|.++|+||.+++..|++. ...++|.+.-....|.+.+ ++
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~-~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD-AA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC-HH
Confidence 221 12489999999999999999999999999999999999986 6888999887788888866 45
Q ss_pred HHHHHhc
Q 013090 398 SIRQSIG 404 (449)
Q Consensus 398 ~lr~~l~ 404 (449)
.|+++|.
T Consensus 157 ~L~~~l~ 163 (190)
T PRK11589 157 NIEQAFK 163 (190)
T ss_pred HHHHHHH
Confidence 5555444
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=8.4e-17 Score=125.33 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=65.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+|+|+|.++||||||++|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.|+.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999988777888888775
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=2.7e-16 Score=123.38 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=66.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE--ccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW--THNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~--T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
|+|+|.++||||||++|+++|+++|++|++|+|. |.|++++|+||| + ..|.++.++++++.|+++|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 999999999999 5 4788899999999999999887753
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=4.2e-16 Score=122.28 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=67.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 332 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~--t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~ 332 (449)
|+++|.|+|||||||+|+++|.++|++|+.|+|+ |.|+++.|+||| +.+|.++.++++.+.|+++|.+++.+
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999999 88899998878889999999988864
No 26
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.61 E-value=1.8e-15 Score=134.30 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=115.1
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----- 331 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----- 331 (449)
+.|++|++++.||||++..+++...++||||.++|+++.|+.+.-+. ...|.|- ....|+..|...=.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~---lisgs~d----av~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIM---LISGSWD----AVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEE---EEeeCHH----HHHHHHHHhhcccccCCeE
Confidence 56899999999999999999999999999999999999988765333 3456553 44566655543211
Q ss_pred ---hcc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHH
Q 013090 332 ---RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDS 398 (449)
Q Consensus 332 ---~r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~ 398 (449)
.|+ +.++.++|.+.|||||+.++|++|.++|+||.++...|+-.. ...+|++.-..+.|++.+ +.+
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~-i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLS-ISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCc-HHH
Confidence 111 236999999999999999999999999999999999988544 677999988889999999 788
Q ss_pred HHHHhcc
Q 013090 399 IRQSIGQ 405 (449)
Q Consensus 399 lr~~l~~ 405 (449)
||++|+.
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 8888775
No 27
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=3.9e-15 Score=117.44 Aligned_cols=73 Identities=63% Similarity=0.953 Sum_probs=67.2
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCC-CCCCCCHHHHHHHHHHhcccccC
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEET-GGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~-g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
|+|+|.++||||||++|+++|+.+||||++|+++|.++++.|+|+|+++ + |.++.++++++++++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999985 5 77787888999999999887753
No 28
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=2.9e-14 Score=112.08 Aligned_cols=71 Identities=32% Similarity=0.520 Sum_probs=64.3
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
+.|+|.++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|+++ .|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999997 6999999999984 7777777889999999987654
No 29
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=5.1e-14 Score=111.01 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=66.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHh
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID-GSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
|+|+|+++||||||++++++|+++||||++|+|.|.|+++.|+|+|.+.+ |.++.++++++++++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999988 8888777788999999988763
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=4.3e-14 Score=111.09 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=63.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP 106 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~ 106 (449)
+++|.|+++||||||++++++|+.+|+||+.|+|+|. +|+++|+|+|++++|.++.+++.++.|++.|..
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999875 799999999999999988777788888888764
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.51 E-value=1.3e-13 Score=109.25 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=63.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
+++|+|+||||||++++.+|+++|++|++|+|.|+ +++++|+|||++.+|. ..++++.+++++.|.++|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999984 8999999999998777 4455688999999998885
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.51 E-value=9e-14 Score=110.19 Aligned_cols=71 Identities=30% Similarity=0.347 Sum_probs=63.8
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
+++|.++||||||++|+++|+.+|+||++|+|+| .+|++.|+|||+++ ++. ..++++++++++.|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 89999999999995 455 45578999999999888765
No 33
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.49 E-value=7.5e-13 Score=122.73 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=94.5
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK 202 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 202 (449)
..+.+|++.|+||||++++|+++|+++||||.+.+...++|.+..++.|+.+ +...+.|+..|...-.. ..
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~~~-~~ 76 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKGAE-LD 76 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhhhh-cC
Confidence 4688999999999999999999999999999999999999999999999652 24567777766543221 11
Q ss_pred cCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHh
Q 013090 203 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTD 282 (449)
Q Consensus 203 ~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~ 282 (449)
+ .. ++ +|.. ... . ...+ ....|+|++.|||||+++++++|++
T Consensus 77 L---~i-------~v-~~~~-----~~~-~-----------~~~~----------~~~~v~v~G~DrPGIV~~vT~~la~ 118 (190)
T PRK11589 77 L---LI-------VM-KRTT-----ARP-R-----------PAMP----------ATVWVQVEVADSPHLIERFTALFDS 118 (190)
T ss_pred e---EE-------EE-Eecc-----ccc-c-----------ccCC----------ceEEEEEEECCCCCHHHHHHHHHHH
Confidence 1 01 11 1110 000 0 0001 1258899999999999999999999
Q ss_pred CCceEEEEEEEecC
Q 013090 283 MQYVVFHANIDAEG 296 (449)
Q Consensus 283 ~gl~I~~A~i~t~g 296 (449)
+|+||.+-+-.+.+
T Consensus 119 ~~iNI~~L~T~~~~ 132 (190)
T PRK11589 119 HHMNIAELVSRTQP 132 (190)
T ss_pred cCCChhheEEeeec
Confidence 99999998887775
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.44 E-value=7.1e-13 Score=102.02 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=55.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHh
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCL 104 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L 104 (449)
.+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|+. .....+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence 47999999999999999999999999999999985 799999999999998873 233444454443
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.34 E-value=9.2e-12 Score=97.59 Aligned_cols=70 Identities=31% Similarity=0.571 Sum_probs=64.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA 108 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~ 108 (449)
++|+|+++|+||+|++++++|+++|+||.+|.++|.+++.+|+|+|.++++.+. +++.++.|+++|...+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~~ 71 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPAC 71 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcccc
Confidence 689999999999999999999999999999999988889999999999998877 6678899999988543
No 36
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=1.7e-11 Score=94.32 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
..|.|+++||||||++++.+|+.+|+||++|+|.|. +|+++|+|+|++.+|+ .-+.|.++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 478999999999999999999999999999999988 7999999999988775 2256777777665
No 37
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.27 E-value=4.1e-11 Score=130.57 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=117.4
Q ss_pred EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc--CCc
Q 013090 38 TVIRVDS-ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA--SSM 114 (449)
Q Consensus 38 t~V~V~~-~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~--~~~ 114 (449)
-.++|.. +|++|+|.+++++|+.++++|.+|.+.+ +|.++..|.|.+..|.+.++....+.++.++.+..... .+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 3677776 9999999999999999999999999999 78888999999999999887777888888887775421 122
Q ss_pred ceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090 115 RSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC 194 (449)
Q Consensus 115 ~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (449)
+...++ ++++|.+.||+|+|+.|+++|. .|.+|++.|.|..++|.||+.+ +. ..+.++..+.
T Consensus 626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~ 687 (693)
T PRK00227 626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT 687 (693)
T ss_pred ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence 323332 7999999999999999999999 8999999999999999999985 21 1356677766
Q ss_pred ccccC
Q 013090 195 NVLKG 199 (449)
Q Consensus 195 ~~L~~ 199 (449)
.+|.+
T Consensus 688 ~~~~~ 692 (693)
T PRK00227 688 RVLAG 692 (693)
T ss_pred HHHhc
Confidence 66543
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=4.2e-11 Score=93.82 Aligned_cols=68 Identities=31% Similarity=0.483 Sum_probs=61.2
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+.|+|.++||||+|++|+++|+.+|+||.+|+++|.++.+.|+|+|+++ ++.++ ++++++++++.|..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999988899999999984 67777 67888888888754
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=1.3e-10 Score=89.95 Aligned_cols=70 Identities=43% Similarity=0.633 Sum_probs=62.4
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
|.|.|.++|+||+|++|+++|+++|++|.++++.|.++.+.|+|+++++ .|.+. +.+++++++++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999988899999999984 67774 5679999999887653
No 40
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.18 E-value=3.4e-10 Score=100.90 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=95.8
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK 202 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 202 (449)
.++++|++.|+||||+...|+++..++|||+..+|+.+.|+.+.-+..|+.+ ++...+|++.|.. +..+++
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l~~-l~~~~~ 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATLPL-LGAELD 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHhhc-ccccCC
Confidence 4578999999999999999999999999999999999999999999999863 4667888887644 444344
Q ss_pred cCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHh
Q 013090 203 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTD 282 (449)
Q Consensus 203 ~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~ 282 (449)
+. ..+ +|. .. .+. .+...-+.+.|.+.||||++.++++.|.+
T Consensus 74 L~---v~m--------~rt-------~~---------------~~~-----~a~~~~v~v~v~a~DrpgIv~~~T~lf~~ 115 (176)
T COG2716 74 LL---VVM--------KRT-------GA---------------HPT-----PANPAPVWVYVDANDRPGIVEEFTALFDG 115 (176)
T ss_pred eE---EEE--------eec-------CC---------------Ccc-----CCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence 31 111 111 00 000 01122358899999999999999999999
Q ss_pred CCceEEEEEEEec
Q 013090 283 MQYVVFHANIDAE 295 (449)
Q Consensus 283 ~gl~I~~A~i~t~ 295 (449)
+|+||.+-.-.|.
T Consensus 116 ~~inie~L~~~~~ 128 (176)
T COG2716 116 HGINIENLVSRTY 128 (176)
T ss_pred cCCchhhceeeee
Confidence 9999998776666
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.17 E-value=7.5e-10 Score=120.81 Aligned_cols=143 Identities=14% Similarity=0.117 Sum_probs=113.8
Q ss_pred EEEEEEe-CCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCccccC
Q 013090 126 TAIELTG-SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG 204 (449)
Q Consensus 126 t~i~v~~-~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 204 (449)
..++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.+...|.|.+ ..|.+. ++ ..+++.+...+.++.+..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCcc
Confidence 5677777 9999999999999999999999999999 899999999998 356654 34 567777777777755431
Q ss_pred CccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHHhCC
Q 013090 205 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ 284 (449)
Q Consensus 205 ~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~~~g 284 (449)
. ..+|.|.+.+ ++++|++.||||+|+.++++|.
T Consensus 621 -------------------------~-------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~--- 653 (693)
T PRK00227 621 -------------------------A-------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP--- 653 (693)
T ss_pred -------------------------c-------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh---
Confidence 0 1346666654 7999999999999999999999
Q ss_pred ceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 285 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 285 l~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
+|..|+++|.|..++|.||+.. | ..+..+...+.+++
T Consensus 654 -~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~ 690 (693)
T PRK00227 654 -DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL 690 (693)
T ss_pred -hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence 7999999999999999999962 1 12355666665554
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.16 E-value=3.2e-10 Score=87.72 Aligned_cols=70 Identities=26% Similarity=0.470 Sum_probs=63.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
|.+.|.++||||+|++++++|+++|++|.++++.+.++.+.|.|++.+.+|.+. +.+++++++++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999999999884 4468888999987653
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.86 E-value=1.9e-08 Score=77.35 Aligned_cols=69 Identities=38% Similarity=0.623 Sum_probs=59.5
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
+.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..++|++..+ ++.+. ++++++++++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999999977788899999985 55553 457889999888654
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.78 E-value=5.9e-08 Score=74.56 Aligned_cols=67 Identities=34% Similarity=0.538 Sum_probs=59.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP 106 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~ 106 (449)
+|.|.++|+||+|++++++|.++|++|..+++.+.+++..++|+|..+++.. .+++.++.|++.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999998766999999999988776 445678888888754
No 45
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.76 E-value=2.3e-08 Score=74.00 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=57.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA 108 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~ 108 (449)
++|+|.|||+.||-+++|+++.+.||+|.++.++|+|.|+.-+|+|....... +-.++.|++.|.+.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999998754331 235677888777653
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.75 E-value=4.7e-08 Score=77.36 Aligned_cols=64 Identities=25% Similarity=0.430 Sum_probs=54.4
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
+.+|++.|+||||+++.++++|+++||||.+.+..+.++++..++.|+-+ ++..++++++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999863 45678888887664
No 47
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.62 E-value=5.9e-07 Score=75.26 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=88.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCccee
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSV 117 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V 117 (449)
-+|.|+..|+||-|+.++..|.++|+||..-.|.-.+.+.+--..|.++ ++-.++|.+.. ..|
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g------F~V 66 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG------FTV 66 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC------cEE
Confidence 4799999999999999999999999999988887666666656666322 34456666542 112
Q ss_pred eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090 118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 173 (449)
Q Consensus 118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~ 173 (449)
.. .-++-|..+|+||-|+.|+.+|.++++|+.++..+++. ..+.-+|.+.+
T Consensus 67 r~-----~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 67 RE-----TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred Ee-----eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 21 34688889999999999999999999999999999854 55666666554
No 48
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.53 E-value=9.1e-07 Score=69.94 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=51.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
+.+|+|.|+||||++++++++|+++|+||.+.++.+.++++.-.+.|.-+ +...++|+..|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998887766666322 346678888887654
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.49 E-value=3.6e-07 Score=67.78 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=59.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
++|+|.|||+.||-.+|++++.++|++|..+.++|.|..+.-+|+|... ..++ +-+|..|+++|.++.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999963 3333 468899999987653
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.40 E-value=1e-06 Score=69.91 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=51.2
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+++|++.|+||||++++|++.|+++||||.+.+.++.+++....+.+..+ . ...+.|++.|..
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~ 63 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPG 63 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHH
Confidence 36899999999999999999999999999999999988888777776642 1 124666666655
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=9.9e-07 Score=69.48 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
+++|.|+||||++++++++|+++||||.+.+..+.++.....|.+.-| .+. ..+.+++.|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence 478999999999999999999999999999988888888888888864 221 2355666665433
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.30 E-value=3.5e-06 Score=63.79 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=39.6
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC--ceEEEEEEee
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVTD 173 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~--~~~dvf~V~~ 173 (449)
|.|.|.++||||+|++|+.+|+++|+||..+...+.++ ....++.+.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 57899999999999999999999999999999999766 3334444433
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.30 E-value=4.2e-06 Score=63.35 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=41.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--EEEEEEEEEc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGC--WFMDVFNVTD 85 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g--~~~d~F~V~~ 85 (449)
+.|.|.++||||+|++++++|+++|+||..+++.+.++ +.+.++.+.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 57899999999999999999999999999999997554 6666666654
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=5.1e-06 Score=65.39 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=48.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 330 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l 330 (449)
+|+|.|+||||++++++++|+++|+||.+.+..+.++++.-.|.+.-+.+. ..+.|++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence 478999999999999999999999999999988887766556666433221 2356666666544
No 55
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.23 E-value=7.1e-06 Score=65.02 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=43.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD 85 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~ 85 (449)
.+|++.|+||||+.++++++|+++|+||.+.+.+..+++|.-...+.-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 579999999999999999999999999999999998888876666653
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=1.2e-05 Score=65.26 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=51.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
.+|++.|+||||++++|+++|+++||||...+..+.+++....+.+.-+ +... ..+.+++.|...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988888777887753 2011 235666666553
No 57
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=1.5e-05 Score=62.49 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=39.4
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYP 390 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p 390 (449)
.+++.|+|||||+++||++|.++|+||...+..+. .....|++.-....|
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~--~~~~~f~~~~~~~~~ 50 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD--PDSGRFFMRVEFELE 50 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec--CCCCeEEEEEEEEeC
Confidence 37899999999999999999999999999998763 233457665443334
No 58
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.98 E-value=2.2e-05 Score=62.29 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=41.2
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCC
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYP 390 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p 390 (449)
+++.+.||||++++|+++|.++|+||.+.+..+.+.. ..+.|.+.-....|
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 7899999999999999999999999999999888643 34566554443444
No 59
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=3.9e-05 Score=60.03 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=32.4
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
+|++.|+||||++++|+++|+++||||.+.+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999999987
No 60
>PRK00194 hypothetical protein; Validated
Probab=97.85 E-value=6e-05 Score=61.30 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=43.5
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
.+++++.|+||||++++|+++|+++|+||....-.+.++.+...+.+.-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~ 51 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe
Confidence 5789999999999999999999999999999999888877766666654
No 61
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=3.5e-05 Score=62.50 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=47.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 329 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~ 329 (449)
.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+. ..+.. ...+.|++.|...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~---~~~~~--~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD---ISESN--LDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE---eCCCC--CCHHHHHHHHHHH
Confidence 47899999999999999999999999999999988876554444443 22211 1235566655543
No 62
>PRK07431 aspartate kinase; Provisional
Probab=97.79 E-value=0.025 Score=61.85 Aligned_cols=262 Identities=13% Similarity=0.162 Sum_probs=142.7
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCC
Q 013090 44 SANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQS 122 (449)
Q Consensus 44 ~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~ 122 (449)
.++.+|.++++...|+++|++|.--..+. ..+..--.|.|.+.+ .....+.|..... ......+. ..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d---------~~~~~~~l~~l~~-~~~~~~i~--~~ 345 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE---------LKKAEAVAEAIAP-ALGGAEVL--VE 345 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH---------HHHHHHHHHHHHH-HcCCCcEE--Ee
Confidence 46889999999999999999998654433 233333356674321 1111222221100 00011122 23
Q ss_pred CceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccC
Q 013090 123 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 199 (449)
Q Consensus 123 ~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 199 (449)
.+...|.|.|. +.+|+++++..+|++.|++|.... +. ...-.|.|.. ...++..+.|++.+.-
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence 45678888886 799999999999999999996655 21 2223344443 1223333444444432
Q ss_pred ccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEE-cCCCcchHHHHHH
Q 013090 200 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDRPKLVFDTVC 278 (449)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DrpgLl~~i~~ 278 (449)
+... ..+. +-|.. ....+.-.|.. ..+...|++. .+++||+++++..
T Consensus 412 ~~~~----~~~~------~~~~~--------------------~~~~~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~ 459 (587)
T PRK07431 412 EDSQ----IEIN------PTASG--------------------QDEPEVRGVAL--DRNQAQLAIRNVPDRPGMAASIFG 459 (587)
T ss_pred CCcc----cccC------ccccC--------------------CCCCcEEEEEc--cCCEEEEEECCCCCCccHHHHHHH
Confidence 2111 0010 00000 00111111111 1233444443 6788999999999
Q ss_pred HHHhCCceEEEEEEEec-CC--eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-c--c-CCceEEEEEeC---CCc
Q 013090 279 TLTDMQYVVFHANIDAE-GP--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R--V-SEGLKLELCTT---DRV 348 (449)
Q Consensus 279 ~L~~~gl~I~~A~i~t~-g~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-r--~-~~~~~l~v~~~---Drp 348 (449)
.|+++|++|..-..... ++ ..-=.|.+ +. .+..+...+.+.|...+.. . . ..-..+.+.+. .+|
T Consensus 460 ~l~~~~i~id~i~~~~~~~~~~~~~isf~v-~~-----~~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~ 533 (587)
T PRK07431 460 ALAEANISVDMIVQSQRCRSDGTRDISFTV-PK-----EDREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTP 533 (587)
T ss_pred HHHHcCCeEEEEEecCCCCCCCceeEEEEE-cH-----HHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCc
Confidence 99999999998654322 21 11112444 21 0111222222223322211 0 1 22467889985 889
Q ss_pred ChHHHHHHHHHhCCCcEEEEE
Q 013090 349 GLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~ 369 (449)
|+++++..+|.+.||+|....
T Consensus 534 gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 534 GVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CHHHHHHHHHHHCCCcEEEee
Confidence 999999999999999996655
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.76 E-value=0.00013 Score=57.94 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCC
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDG------CWFMDVFNVTDED 87 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~------g~~~d~F~V~~~~ 87 (449)
.|+|.|+|+||++++++++|+++|+||.+.+..+.+ +.+.-.+.|.-+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 55 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA 55 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence 378999999999999999999999999999998865 6666666675553
No 64
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.75 E-value=0.00026 Score=56.12 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=49.8
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.+.-. +.+++..+-+.|++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence 4678999999999999999999999999999999984 5666666766642 35777777777654
No 65
>PRK00194 hypothetical protein; Validated
Probab=97.74 E-value=0.00012 Score=59.60 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=43.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD 85 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~ 85 (449)
...|+|.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~ 51 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe
Confidence 5689999999999999999999999999999998888888777666643
No 66
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.63 E-value=0.0011 Score=55.88 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=81.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKL 340 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l 340 (449)
.|+|...++||=|...+.+|.+.|+||.--.|.-+|++-.=..+| + .+ ++-.+.|+++=- -....-++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV-~-------~~---d~A~~~Lee~gF-~Vr~~dVl 72 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV-D-------RP---DEAHSVLEEAGF-TVRETDVL 72 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc-C-------Ch---HHHHHHHHHCCc-EEEeeeEE
Confidence 688999999999999999999999999999998888776544444 1 11 333344442210 01124567
Q ss_pred EEEeCCCcChHHHHHHHHHhCCCcEEEEEEe-ecCCceeeEEEEE
Q 013090 341 ELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKSGKAVNTFYVG 384 (449)
Q Consensus 341 ~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~-T~g~~~~d~F~v~ 384 (449)
-|.-.|+||=|+.|+.+|.++++|+..+--. +..++|.-.|.+.
T Consensus 73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e 117 (142)
T COG4747 73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE 117 (142)
T ss_pred EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence 7788999999999999999999999988743 4445566565553
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.56 E-value=0.002 Score=63.62 Aligned_cols=109 Identities=7% Similarity=-0.003 Sum_probs=64.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcc-cccccCCcc
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGP-EACFASSMR 115 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~-~~~~~~~~~ 115 (449)
+|+|.|+||||+.+.++++|+++|+||.+.+.+.+ +|+|.-.+.+.-+.. ..+ .+.|+++|.. .... . .-
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~----~~~l~~~l~~~~~~~-~-~l 74 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLE----ESSLLAAFKSALAEK-F-EM 74 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCC----HHHHHHHHHHHHHHH-h-CC
Confidence 58999999999999999999999999999999974 478777777754422 122 2344444444 2110 0 00
Q ss_pred eeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEE
Q 013090 116 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVV 154 (449)
Q Consensus 116 ~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~ 154 (449)
.+.+........|-|.+.-+---|..|......-.+++.
T Consensus 75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~ 113 (280)
T TIGR00655 75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE 113 (280)
T ss_pred EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence 111111112233444444445556666666665555433
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.0015 Score=64.83 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS 71 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~ 71 (449)
...+|+|.|+||||+.+.++++|+++|+||.+.+.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 346899999999999999999999999999999997
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.54 E-value=0.0012 Score=65.44 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE---- 331 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~--t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~---- 331 (449)
..+|+|.|+|||||++.++..|+++|+||.+.+.. +. +.++. .+-+.+.....+ ..++|++.|.+.-+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999999999999986 33 33332 111211111112 23556666654332
Q ss_pred ----hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090 332 ----RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364 (449)
Q Consensus 332 ----~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~ 364 (449)
+...+..++=|-+.-+..-|.++-...++..++
T Consensus 84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~ 120 (289)
T PRK13010 84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELD 120 (289)
T ss_pred eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCC
Confidence 111223344444444455566666666665554
No 70
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0033 Score=62.37 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh----
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA--EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE---- 331 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t--~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~---- 331 (449)
...+|+|.|+|||||+++++++|+++|+||.+.+..+ .++.+.=.+.+ +.+..+. ..+.|++.|++.-+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v-~~~~~~~----~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF-EGDGLIF----NLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE-EeCCCCC----CHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999999999999 65543222222 2111112 24556655554332
Q ss_pred ----hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090 332 ----RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364 (449)
Q Consensus 332 ----~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~ 364 (449)
+...++.++-|-+.-+---|..+-...+...++
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~ 116 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP 116 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence 111233444444444444555555555554443
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.49 E-value=0.00014 Score=58.59 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=44.0
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
..+|+|.|.||||+.+.|+++|+++|+||++-.-.-..|.....+.|.-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~ 51 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence 5689999999999999999999999999999877668888888888875
No 72
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.001 Score=51.59 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=47.6
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
|.|.++||||+|++|+.++++.|+||......+. ++.+...|.+.-. +.++++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 6889999999999999999999999998888764 4565555665531 34677777777654
No 73
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.43 E-value=0.00032 Score=69.52 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=42.8
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 392 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~ 392 (449)
.+.+++.|.|||||+++||++|.++|+||..+...+. ...+.|.+.-....|.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~--~~~~~F~m~~~~~~p~~ 60 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDD--RLSGRFFMRVEFHSEEG 60 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeec--CCCCeEEEEEEEecCCC
Confidence 5789999999999999999999999999999986533 46667776433333433
No 74
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.37 E-value=0.0015 Score=51.71 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
+.+.|.+.||||+|++|+.++++.|+||....+.+ .++.+.-.|.|.- .+.+.++.|.+.|...
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCTS
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHCC
Confidence 47899999999999999999999999999999987 4788888888753 3444667777777654
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.33 E-value=0.0041 Score=61.45 Aligned_cols=100 Identities=9% Similarity=0.188 Sum_probs=64.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR----- 333 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r----- 333 (449)
+|+|.|+||||+++.++..|+++|+||.+.+.... ++++.-.+.+ +.++... ..++|++.|.+++...
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v-~~~~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEF-QLEGFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEE-EeCCCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999999999999998885 3544323333 3222122 2456776666623211
Q ss_pred ----cCCceEEEEEeCCCcChHHHHHHHHHhCCCcE
Q 013090 334 ----VSEGLKLELCTTDRVGLLSNVTRIFRENSLTV 365 (449)
Q Consensus 334 ----~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I 365 (449)
..+..++=|-+.-+..-|.+|-...++..++.
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~ 112 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDA 112 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCc
Confidence 12234444445555556777777777666643
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.30 E-value=0.0063 Score=60.38 Aligned_cols=99 Identities=9% Similarity=0.070 Sum_probs=61.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh------
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE------ 331 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~------ 331 (449)
.+|+|.|+||||+++.+++.|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|++.|++.-+
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQW 81 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcEE
Confidence 589999999999999999999999999999998755 3333323333222221 13556655554432
Q ss_pred --hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090 332 --RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364 (449)
Q Consensus 332 --~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~ 364 (449)
+...+..++-+-+.-+.--|..+...++...++
T Consensus 82 ~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~ 116 (286)
T PRK13011 82 ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELP 116 (286)
T ss_pred EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCC
Confidence 111223344444444555566666666666554
No 77
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.30 E-value=0.0048 Score=61.26 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=50.6
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
...+|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.|.-.+.+.- +..+. ..+.|+++|...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998 7787766666643 11111 135566655544
No 78
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.29 E-value=0.00027 Score=56.98 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=43.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD 85 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~ 85 (449)
..+|+|.+.||||+.+.++++|+++|.||.+-..+-.+||+--.+.|.-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~ 51 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence 3589999999999999999999999999998777778899887777743
No 79
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.26 E-value=0.0023 Score=50.54 Aligned_cols=64 Identities=8% Similarity=0.163 Sum_probs=47.3
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
+.+.+...|+||+|+.|+++|+.+|.||.++.+....+...-.+-++- .| ++..++++..+|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~~---~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-VC---TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhC
Confidence 578999999999999999999999999999986643333333332321 23 44557888888887
No 80
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.25 E-value=0.001 Score=61.02 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=49.8
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKG 412 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~ 412 (449)
+.+++.+.|+||+|++|+.+|+++|+||.++.+..........+.+.- |-++..+++|+++|.. .+++|..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv----~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV----PGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE----ECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 578999999999999999999999999999998653333333444431 3344445677776665 2344444
No 81
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0028 Score=49.14 Aligned_cols=60 Identities=7% Similarity=0.157 Sum_probs=45.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+.|.+.||||+|++++.++++.|.||.+....+. .+.+.-.|.+. +.+...++.+...|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve------v~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD------APSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE------cCCHHHHHHHHHHHh
Confidence 6789999999999999999999999999888776 45665555552 223346666666665
No 82
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.18 E-value=0.0023 Score=49.98 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=44.2
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+. +. ..|.+.- .+.++++.+-++|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHhC
Confidence 37899999999999999999999999999999875 33 2222222 134667777776654
No 83
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.11 E-value=0.0041 Score=49.83 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=52.7
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhccc--eeeec
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT--ILKVK 411 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~~--~~~~~ 411 (449)
..+.+...|+||+|+.|+.+|..+|.||.++.+..........+-++-..| +...++++..+|.+. +++|.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~KlidVikV~ 75 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQINVLTVE 75 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCccEEEEE
Confidence 368889999999999999999999999999997755444444444432223 555678888888873 45655
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.06 E-value=0.0019 Score=47.41 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=40.1
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 173 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~ 173 (449)
|.+..+|+||.|++++.+|.++|+||.+..++..+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999998765 67777887765
No 85
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0043 Score=47.09 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=41.9
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-----CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLC 194 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-----~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (449)
+.|..+|+||+|++|+.+++++|+||.+...... .+.+...|.+... +.+.++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 3578899999999999999999999998876653 2344444444431 2355666666553
No 86
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0059 Score=46.50 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=37.6
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~ 172 (449)
..+.|..+|+||.|++|+.+|+++|+||.+..+...++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 357889999999999999999999999999998876654 444443
No 87
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.87 E-value=0.0078 Score=49.46 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=54.4
Q ss_pred CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090 336 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN 413 (449)
Q Consensus 336 ~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~ 413 (449)
....|++...|+||+|+.|+..|..+|.||.++.+...+......+.+.-. ++..++++..+|.+ .+++|.+-
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCCcCEEEEEEC
Confidence 357899999999999999999999999999999987655554443433211 23457889999987 34566543
No 88
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.83 E-value=0.009 Score=53.91 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=52.6
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN 413 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~ 413 (449)
+.+++...|+||.|++|+.+|+++|+||.+..+...++...-.+.+.- ++ +...++++..+|.+ .+++|.+-
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli~V~~V~~~ 75 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLVDVIKVSDL 75 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCccEEEEEec
Confidence 478999999999999999999999999999987665534333332221 23 45557889998887 34566553
No 89
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.83 E-value=0.004 Score=45.62 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=37.8
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEE
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVG 384 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~ 384 (449)
+++...|+||.|++++.+|.++|+||.+..+...+ +++.-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46788999999999999999999999999977654 5666677664
No 90
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.01 Score=46.02 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=46.3
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHH-HHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPE-RLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~-~~~~l~~~L~~ 195 (449)
.+.+.++|+||++++|+.+|+++|+||......+. ++.+.-.|.+... +.+ .++.+-++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 47899999999999999999999999999887653 3555555655531 123 66777776654
No 91
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.76 E-value=0.011 Score=46.78 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=39.6
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG 388 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g 388 (449)
+.+.+...|+||.|++|..+|+++|+||.+......+. ...=.|+|. .+|
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~ 52 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEG 52 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EEC
Confidence 45778889999999999999999999999998666644 344577773 445
No 92
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.76 E-value=0.01 Score=45.29 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=37.4
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-C-ceEEEEEEe
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-T-RAAALMQVT 172 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~-~~~dvf~V~ 172 (449)
..+.+..+|+||.|++++..|+++|+||.+....... + .....|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4688899999999999999999999999988877642 2 334455554
No 93
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.011 Score=45.46 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=43.3
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-C-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
-|.+.+.|+||++++|+.+|+++|+||......+. + +.+.-.+.+.. .+.+.++.+-+.|++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-------~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-------TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-------CCHHHHHHHHHHHHc
Confidence 47889999999999999999999999999987654 3 33333333322 124555666565543
No 94
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0057 Score=58.92 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=38.3
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEE
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMD 79 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d 79 (449)
...++++.|+|++|+.++|++.|+++|+||.++..+++ .|+|+.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm 51 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM 51 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE
Confidence 45789999999999999999999999999999999973 455543
No 95
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0079 Score=57.97 Aligned_cols=66 Identities=18% Similarity=0.447 Sum_probs=47.5
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
..+++++.|+|+||+.+.|++.|+++||||..+.-++. +|+...-..... .+.+. ..+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence 56899999999999999999999999999999999862 455443333332 23332 23556666554
No 96
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.64 E-value=0.014 Score=52.87 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=51.5
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN 413 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~ 413 (449)
+.+++...|+||.|++|+.+|+++|+||.+..+....+...-.+.+. ..| +...++++..+|.+ .+++|.+-
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~-V~~---~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIV-TSG---DEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEE-EEC---CHHHHHHHHHHHhccccEEEEEec
Confidence 47899999999999999999999999999998765543333322221 122 55557888888887 34566553
No 97
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.009 Score=45.45 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=37.6
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 384 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~ 384 (449)
..+.|...|+||.|++|+.+|.++|+||.+.-+...++ ...|.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEE
Confidence 35788999999999999999999999999998766555 3566663
No 98
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.58 E-value=0.023 Score=42.90 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=43.5
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-C-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+..+ + ..++.+.+.|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHhC
Confidence 47789999999999999999999999999998775 3 333334444321 2 445566665543
No 99
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.0084 Score=46.23 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=43.4
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
+.+.+.+.|+||+|++|+.+|.++|++|......+..+ ....+..++. +.+....+++.+.|.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence 45789999999999999999999999999998755432 2122223222 2344445555555554
No 100
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.52 E-value=0.011 Score=44.74 Aligned_cols=61 Identities=16% Similarity=0.360 Sum_probs=43.9
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec-CCceee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVN-TFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~-g~~~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.|.+.+.|+||+|++|+++|.++|++|.+....+. ++.... .|.+ +. + + ..++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-EC---C-H-HHHHHHHHHHhC
Confidence 47889999999999999999999999999997765 333223 3333 22 2 3 445677776664
No 101
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.018 Score=43.62 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=29.5
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 295 (449)
Q Consensus 262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~ 295 (449)
+.|.++|+||+|++++.+|.+.|+||.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998776543
No 102
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.47 E-value=0.021 Score=45.04 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=45.8
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVN-TFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
+.+++...++||.|+.|+++|+.+|.||.+..+....+. ... ++.+ + +...+++|..+|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v----~---~~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV----A---SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE----C---CCchHHHHHHHHhc
Confidence 578999999999999999999999999999997654322 222 3333 2 33346788888876
No 103
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.022 Score=43.12 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=36.6
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEe
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVT 172 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~ 172 (449)
.+.+.++|+||.|++|+..|++++++|.+....+.+ +.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 578899999999999999999999999988877653 4444444444
No 104
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.38 E-value=0.03 Score=44.16 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=45.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceE-EEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAA-ALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~-dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
..|.+...|+||.|++|+++|+..|.||.+-.+.- .+.... -++.+. | ++...+.+...|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999988874 333333 233322 2 235667777776654
No 105
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.38 E-value=0.01 Score=44.61 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=38.4
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEe
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVT 172 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~ 172 (449)
+.+.++|+||++++|+.+|+++|+||.+......+ +...-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 67899999999999999999999999999988754 5555666663
No 106
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.37 E-value=0.036 Score=45.62 Aligned_cols=86 Identities=8% Similarity=0.115 Sum_probs=56.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLK 339 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~ 339 (449)
..+.+...|+||+|.+++..|+..|+||.+-.+.-++..-+-.+.+.-. + + ..++++.+.|...+. +
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~-~~i~Qi~kQL~KLid-------V 75 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----D-QRLEQMISQIEKLED-------V 75 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----c-hHHHHHHHHHhCCcC-------E
Confidence 4689999999999999999999999999999887664222222333221 2 2 467888888875443 4
Q ss_pred EEEEeCCC-cChHHHHHHHH
Q 013090 340 LELCTTDR-VGLLSNVTRIF 358 (449)
Q Consensus 340 l~v~~~Dr-pGLL~~it~~l 358 (449)
+++.-.+. +-+..++..+|
T Consensus 76 ikV~~l~~~~~v~~e~~~~~ 95 (96)
T PRK08178 76 LKVRRNQSDPTMFNKIAVFF 95 (96)
T ss_pred EEEEECCCchhHHHHHHHHh
Confidence 55555333 33333354443
No 107
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.37 E-value=0.021 Score=42.84 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=38.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013090 40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNV 83 (449)
Q Consensus 40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V 83 (449)
+.|.+.|++|++++++++|.++|+||........ ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 5688999999999999999999999999998764 3777777777
No 108
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.32 E-value=0.0042 Score=48.21 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=42.0
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee--cCCceeeE--EEEEcCCCCCCC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT--KSGKAVNT--FYVGGASGYPVD 392 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T--~g~~~~d~--F~v~~~~g~p~~ 392 (449)
.+|+++..||-.++|+|-+|+.++++|.+|+|.. .+++...+ |.+.+..+. ++
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~ 58 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KL 58 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-cc
Confidence 4899999999999999999999999999999974 35665554 566555443 44
No 109
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.27 E-value=0.027 Score=42.39 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=30.3
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT 372 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T 372 (449)
|.+.+.|+||.|++|+.+|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999998665
No 110
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.25 E-value=0.021 Score=52.33 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=46.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
..+.+.+.|+||+|++|+++|+..|+||.+-.+.+ ..+....++.+.. . ....+.|..+|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~----~----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG----D----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC----C----HHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999976 3344434444332 1 233667777776644
No 111
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.028 Score=45.89 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGY 389 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~ 389 (449)
.+.|-+...|+||-|+++-.+|+++|||+.+.+......+ .+=.||| |..|.
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~ 66 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK 66 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 3667777799999999999999999999999997765444 5558888 45564
No 112
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.14 E-value=0.032 Score=43.16 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=43.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHH-HHHHHHHHHH
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDA-ERERVIQCLK 327 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~-~~~~l~~~L~ 327 (449)
.+.|.++||||++++++..|+++|.||......+. ++.+.=.|-+.- .+.. .++.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v------~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT------STMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc------CchHHHHHHHHHHHh
Confidence 47899999999999999999999999999876554 344443454422 1212 4566665554
No 113
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.13 E-value=0.041 Score=44.12 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=47.3
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC-ceE-EEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAA-ALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~-~~~-dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
..|.+...|+||.|++|+++|+..|+||.+-.+..... ..- .++.+.. | ++...+.+...|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence 36889999999999999999999999999999886433 332 3344331 2 2456677777776543
No 114
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.024 Score=43.21 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=36.7
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-C-ceeeEEEE
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-G-KAVNTFYV 383 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~-~~~d~F~v 383 (449)
+.+.+...|+||.|++++++|.++|++|.+....... . .+.-.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v 49 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISF 49 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEE
Confidence 4688899999999999999999999999988766552 2 33345555
No 115
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.11 E-value=0.044 Score=42.64 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=43.7
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec-CCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~-g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
+-+...|+||-|++|..+|+++|+||.+...... ++.++=.|++. ..|.+-+.. .+.+-++|..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~~~~~-~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHIDDPD-VKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCCCCHH-HHHHHHHHHH
Confidence 3455679999999999999999999999975544 34566688884 445322333 3444444443
No 116
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.11 E-value=0.042 Score=42.77 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=44.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
.+.|.+.||+|++++|+.++++.|.||....+.+. +... |.+.- .+...++.|.+.|...
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v------~~~~~L~~li~~L~~i 61 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPT------IEFEKLQTLMPEIRRI 61 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEe------cCHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999998776 5522 33321 2233456676776654
No 117
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.09 E-value=0.044 Score=49.44 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
..|++...|+||.|++|+++|+..|+||.+.-+...+ +...-+|.|. + ++...+.+...|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcCc
Confidence 3688999999999999999999999999998887654 3333444443 2 2456777777776644
No 118
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.044 Score=41.21 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=36.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090 40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT 84 (449)
Q Consensus 40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~ 84 (449)
+.+.++|+||.+++++.+|+++|++|....... .++...-.|.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 567899999999999999999999999888765 245555445553
No 119
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.03 E-value=0.028 Score=43.08 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=37.4
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEee
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTD 173 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~ 173 (449)
+.+..+|+||.+++|+.+|+++|+||.+..... .++.+.-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 457899999999999999999999999888765 3456666666653
No 120
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.02 E-value=0.022 Score=42.58 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=36.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013090 40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNV 83 (449)
Q Consensus 40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V 83 (449)
+.|..+|+||-|++++++|.++|+||.+...+.. .+...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 6788999999999999999999999998877643 3566555656
No 121
>PRK07431 aspartate kinase; Provisional
Probab=96.00 E-value=2.7 Score=46.02 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=111.7
Q ss_pred CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc--
Q 013090 35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-- 109 (449)
Q Consensus 35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-- 109 (449)
.+...|.|.+. +.+|+++++..+|.+.|++|.... + .+.. -.|.|...+ .++..+.|++.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~~d-----~~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDAED-----GDKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence 35568888875 789999999999999999996443 2 2222 134453321 12355666666633221
Q ss_pred -ccCC-----ccee-eccCCCceEEEEEE-eCCccchHHHHHHHHHhCCCeEEEEEEEc-cCC--ceEEEEEEeeCCCCC
Q 013090 110 -FASS-----MRSV-GVKQSMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNT--RAAALMQVTDEETGG 178 (449)
Q Consensus 110 -~~~~-----~~~V-~~~~~~~~t~i~v~-~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~--~~~dvf~V~~~~~g~ 178 (449)
..+- ...| ......+...|++. .++.+|++++|...|+++|++|..-.... .++ ..--.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 0111 1112 22334455566665 67889999999999999999998775432 222 2233344432
Q ss_pred CCCCHHHHHHHHHHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCc
Q 013090 179 AISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKD 258 (449)
Q Consensus 179 ~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~ 258 (449)
.......+.+.+ +..... .-.+.++ ++
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------~~~i~~~----~~ 518 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------GAEVEDG----PA 518 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----CC
Confidence 112222222211 111000 0012221 24
Q ss_pred eeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEE
Q 013090 259 YSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHAN 291 (449)
Q Consensus 259 ~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~ 291 (449)
...|.|.|. .+||++.++..+|.+.|++|....
T Consensus 519 va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 519 IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 567888875 789999999999999999996644
No 122
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.00 E-value=0.033 Score=42.61 Aligned_cols=58 Identities=26% Similarity=0.503 Sum_probs=40.6
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec--CCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~--g~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
+-+...|+||.+++|+.+|.++|+||.+...... ++.+.=+|.+ ++ +...+..+.|++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHHc
Confidence 3467899999999999999999999999886543 3444445555 23 444444455554
No 123
>PRK08577 hypothetical protein; Provisional
Probab=95.97 E-value=0.063 Score=47.16 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+....+.|.+.+.|+||+|++|+.+|+++++||.+....+.. +.+...|.+.-+ .. ...+..+.+.|.+
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEELEEELKK 122 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHHHHHHHc
Confidence 445588999999999999999999999999999998877643 333344444321 11 1345556565543
No 124
>PRK08577 hypothetical protein; Provisional
Probab=95.95 E-value=0.033 Score=48.98 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=34.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 374 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g 374 (449)
.+.+.+.+.|+||+|++|+++|.+++++|.+....+..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 68899999999999999999999999999999876653
No 125
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=95.93 E-value=0.055 Score=49.02 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=47.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
..|+|...|+||.|++|+++|+.+|+||.+.-+.... +...-+|.|.. ++...+.+...|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999998876543 33344454442 2456777777776544
No 126
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.90 E-value=0.0095 Score=45.29 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013090 40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTD 85 (449)
Q Consensus 40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~ 85 (449)
+.+.+.|+||++++++.+|.++|.||......+.++.+.-.|.+..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 5778999999999999999999999987766555577766666643
No 127
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.89 E-value=0.018 Score=44.72 Aligned_cols=67 Identities=19% Similarity=0.439 Sum_probs=47.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecC-CCCCCCHHHHHHHHHHHHH
Q 013090 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHID-GSPVKSDAERERVIQCLKA 328 (449)
Q Consensus 262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~ 328 (449)
|++.++-||-.|||++-+|+.+++-|++|.|... +++-..+|.++..+ ++.+........+.+.+..
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~ 72 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTK 72 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHH
Confidence 7889999999999999999999999999999776 55555555444333 3344433334555555443
No 128
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.021 Score=42.64 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=31.6
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN 162 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~ 162 (449)
++.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367888999999999999999999999988876543
No 129
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.73 E-value=0.013 Score=44.43 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=34.0
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v 383 (449)
+-+.+.|+||+|++|+.+|.++|+||......+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888655444444444444
No 130
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.71 E-value=0.089 Score=38.45 Aligned_cols=60 Identities=30% Similarity=0.437 Sum_probs=42.3
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhc
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC 194 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (449)
|.+.++|+||.+.+|+..|.+++++|....+...+ +.....|.+..+ +......+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 46789999999999999999999999999887655 333344444432 1344555555543
No 131
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.62 E-value=0.09 Score=38.44 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=42.7
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
|.+.+.|+||++++++.+|.+++++|....+...++. +.-.|.+... +......+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999998766522 2223333211 23335666666654
No 132
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.60 E-value=0.11 Score=40.90 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=39.3
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 173 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~ 173 (449)
+.+.+..+|+||.|++|..+|+++|+||.+-..... .+...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 457778899999999999999999999999887664 345567788865
No 133
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.59 E-value=0.045 Score=41.53 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=37.8
Q ss_pred CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 346 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 346 DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
|+||.|..|+.+|+..|.||.++.+........-.+.++ ..| +...+++|..+|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~-v~~---~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV-VSG---DDREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE-EES----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE-Eee---CchhHHHHHHHHhc
Confidence 789999999999999999999999887433333333332 122 12235678888876
No 134
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.59 E-value=0.071 Score=41.64 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=38.9
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG 388 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g 388 (449)
.+-+...|+||-|+++-..|+++|||+.+.+...... ..+=.|+| |..|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 3445568999999999999999999999999776544 35558888 5556
No 135
>PRK04435 hypothetical protein; Provisional
Probab=95.57 E-value=0.12 Score=46.22 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
..+....|.+...|+||+|++|..+|+.+|+||........ +|.+.-.|.+... + . ...++.|-+.|++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHHc
Confidence 35678889999999999999999999999999998877654 4555556666541 1 1 2356666666654
No 136
>PRK11899 prephenate dehydratase; Provisional
Probab=95.53 E-value=0.055 Score=53.46 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~ 394 (449)
.+.+-+...|+||.|+++-.+|+++|||+++.+....+.+ .+=+||| |..|..-++.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~ 251 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN 251 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH
Confidence 4566666789999999999999999999999998866544 5668888 6777655555
No 137
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.52 E-value=0.083 Score=41.71 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=45.1
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCc-eEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTR-AAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~-~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
..|.+...|+||.|++|+++|+..|.||.+-.+... ++. .--++.|.+ +...+.|...|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhcC
Confidence 578999999999999999999999999999998753 333 334444421 23456666666553
No 138
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.089 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.3
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
+.+.-+|+||-|++++.+|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788899999999999999999999998876553
No 139
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.42 E-value=0.083 Score=39.86 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=37.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEE
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVT 84 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~ 84 (449)
.+.+.++|++|.|++++..|++++++|.+....+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887764 35544445554
No 140
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.13 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=31.0
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 371 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~ 371 (449)
+.+.+...|+||.|.+++.+|.++|+||.++...
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 5788899999999999999999999999988754
No 141
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.27 E-value=0.14 Score=35.45 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=35.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEE
Q 013090 40 IRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDG-CWFMDVFNVT 84 (449)
Q Consensus 40 V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~-g~~~d~F~V~ 84 (449)
|.+.++|++|.+.+++++|.++|++|........+ .....++.+.
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV 46 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence 46889999999999999999999999999887643 3333344443
No 142
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.21 E-value=0.13 Score=35.52 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.2
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 374 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g 374 (449)
+.+.+.|+||++++|+.+|.++|++|..+......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999999976654
No 143
>PRK07334 threonine dehydratase; Provisional
Probab=95.09 E-value=0.11 Score=54.22 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=49.6
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-----CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-----~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
-...|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.- .+.++++.+...|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999998764 345444444442 235677777777655
No 144
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.97 E-value=0.14 Score=39.14 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT 84 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~ 84 (449)
+.+.+..+|+||.+.+++++|.++|+||.+....- .++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57889999999999999999999999999887652 356666677764
No 145
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.86 E-value=0.13 Score=48.74 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=47.3
Q ss_pred CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHH
Q 013090 335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDS 398 (449)
Q Consensus 335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~ 398 (449)
+.++.|-+.-.||||.+..|+.+|.+++|||..+.+.......+-+..+. .+.+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~--vD~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIE--IDKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEE--eCCCCCHHHHhh
Confidence 45778888899999999999999999999999999887644444444442 255777775443
No 146
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.55 E-value=0.21 Score=38.38 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=30.1
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090 262 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 295 (449)
Q Consensus 262 v~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~ 295 (449)
+.|.-+|+||-|++++..|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999998766554
No 147
>PRK04435 hypothetical protein; Provisional
Probab=94.55 E-value=0.27 Score=43.84 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=53.3
Q ss_pred cCCCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 31 NEACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 31 ~~~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
....+..+.+.+...|+||+|+++.++|+++|+||....... .+|.+.-.|.|...+. ...++.|.+.|...
T Consensus 63 ~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~i 135 (147)
T PRK04435 63 EMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRNL 135 (147)
T ss_pred ccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHcC
Confidence 334556778999999999999999999999999999887765 4677766777754321 12456666666654
No 148
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.44 E-value=0.14 Score=50.27 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=46.8
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~ 394 (449)
.|.|-+...|+||-|+++-.+|+.+|||+++.+....+.. ++=+||| |-.|..-+..
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~~ 251 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDPL 251 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcHh
Confidence 5777788889999999999999999999999998766544 6668888 6777665544
No 149
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.00 E-value=0.21 Score=39.19 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=39.0
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEEcCCCC
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGY 389 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~~~~g~ 389 (449)
+-+...|+||-|+++-.+|+.+|||+.+.+..... ...+=.||| |..|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 44556899999999999999999999999977654 445668888 45553
No 150
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.87 E-value=0.27 Score=54.90 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=49.8
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
...|.|.+.||+|||++|+.+++..++||.+..+.+. ++.+...|.|.- .+.+++..+-..|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999998774 455555555542 235677777777654
No 151
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=93.86 E-value=0.24 Score=37.53 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred CccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 134 DRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 134 DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
|+||.|.+|+++|...|.||.+..+.. .++...-++.+.. . +...+.|...|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhccC
Confidence 789999999999999999999999987 3333344444442 1 134566767666543
No 152
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.76 E-value=0.39 Score=36.63 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=39.5
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+.|.-|||||-|.+++.+++. |.||....-...+-....++..-. ..+++..+.+.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 357789999999999999999 999988765543322222222222 1124666777776643
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.75 E-value=1.2 Score=46.12 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=66.0
Q ss_pred ceeEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 013090 258 DYSVVTIT---SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R 333 (449)
Q Consensus 258 ~~tvv~V~---~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~-r 333 (449)
+...|.|. ..++||++.++...|.+.|++|..-......... .|+| +. +..+.+.+.|.+.+.. .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V-~~--------~d~~~a~~~L~~~~~~~~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTV-DE--------TDADEAVRALKDQSGAAG 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEE-eH--------HHHHHHHHHHHHHHHhcC
Confidence 45678887 5688999999999999999999764322122111 2555 21 1233444445444311 0
Q ss_pred ------cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEE
Q 013090 334 ------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR 367 (449)
Q Consensus 334 ------~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~ 367 (449)
...-..+.+.+. ++||+++++.++|.+.|+||..
T Consensus 328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 122366778885 7899999999999999999985
No 154
>PRK06635 aspartate kinase; Reviewed
Probab=93.70 E-value=0.61 Score=48.48 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=65.1
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCC
Q 013090 44 SANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQS 122 (449)
Q Consensus 44 ~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~ 122 (449)
..++||.++++..+|.++|++|.-...+. .+|..--.|.|.+.+ .+...+.|..... ...-..+ ...
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~---------~~~a~~~L~~~~~-~~~~~~i--~~~ 337 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDD---------LEKALELLEEVKD-EIGAESV--TYD 337 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHH---------HHHHHHHHHHHHH-HcCcceE--EEc
Confidence 56789999999999999999999644432 333444456663211 1222233332100 0000111 223
Q ss_pred CceEEEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090 123 MDHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 123 ~~~t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.+...++|.| ++.||.+++|..+|+++|+||....
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 4567788876 6899999999999999999998753
No 155
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.37 E-value=0.74 Score=37.55 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=46.2
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 331 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~ 331 (449)
+.+-+.+..+|+||-|+++...|++.|+|+.+-.---.. .+.+ .||| +.+|. . + ...+.+.+.|.+.+.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y-~FfV-Dieg~-~-~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEY-EFFI-NLDKK-S-A-PALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEE-EEEcC-C-C-HHHHHHHHHHHHHhC
Confidence 335555666999999999999999999999885543332 2222 3667 77776 2 3 355556566665553
No 156
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.35 E-value=1.3 Score=45.93 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=66.3
Q ss_pred CeEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVD---SANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~---~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+...|+|. ..+++|.++++..+|.++|++|.--... ... .--.|.|...+ .+...+.|++.+... .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~~d-----~~~a~~~L~~~~~~~----~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDETD-----ADEAVRALKDQSGAA----G 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeHHH-----HHHHHHHHHHHHHhc----C
Confidence 44567777 5788999999999999999999733222 111 11245553211 012223333322111 0
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEE
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVS 155 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~ 155 (449)
-..+ ....+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 328 -~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 -LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred -CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 0111 22345678888885 6899999999999999999984
No 157
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.20 E-value=0.73 Score=35.67 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=40.7
Q ss_pred EEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090 263 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 328 (449)
Q Consensus 263 ~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 328 (449)
.+..+|+||-|+++...|+++|+||.+-.-.-. +....=.||| +.+|.+- + ...+.+.+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~~-~-~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHID-D-PDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCCC-C-HHHHHHHHHHHH
Confidence 345589999999999999999999999744333 2222223666 5556422 2 345555555553
No 158
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.16 E-value=0.36 Score=50.05 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=45.6
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~ 394 (449)
.+.|-+...|+||.|+++-..|+.+|||+.+.+....+. ..+=.||| |..|..-++.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~~ 354 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSAE 354 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCHH
Confidence 455666778999999999999999999999999875544 46668888 6777555554
No 159
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.11 E-value=0.046 Score=43.96 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=28.0
Q ss_pred EEEEEeCC-ccchHHHHHHHHHhCCCeEEEEE
Q 013090 127 AIELTGSD-RPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 127 ~i~v~~~D-rpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
+|+|.|.| ..|++++|+++|+++|+||..-+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 37899999 99999999999999999996544
No 160
>PRK06291 aspartate kinase; Provisional
Probab=93.04 E-value=3.4 Score=43.92 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=74.2
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
++...|.|.+. +.||+++++...|.+.|++|......+..... .|.| +. ...+...+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V-~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVV-DE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEE-eH--------HHHHHHHHHHHHHHHHh
Confidence 34567888765 68999999999999999999885443333222 2444 21 1223334444444331
Q ss_pred ---c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090 333 ---R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 383 (449)
Q Consensus 333 ---r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v 383 (449)
. ...-..+.+.+. ++||+++++..+|.+.||+|.-.. +|.....+ |.|
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV 445 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVV 445 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEE
Confidence 1 122367888885 799999999999999999998555 44444444 455
No 161
>PRK07334 threonine dehydratase; Provisional
Probab=92.97 E-value=0.5 Score=49.20 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=46.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-----g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+.|.|.+.||||+|.+|+.+|++.++||.+....+. ++.+.=.|.| . +.+.+.++.+...|.
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i-~-----V~d~~~L~~vi~~Lr 393 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVI-E-----TRDAAHLQEVIAALR 393 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEE-E-----eCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999988764 3444333333 2 223346677776665
No 162
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.96 E-value=0.48 Score=52.77 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=49.1
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC-ceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~-~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
...|.|.+.||+|+|++|+.+++..++||.++.+.+.++ .+...|.|.- .+.+++..|-..|+.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999877653 4444455442 124677777776654
No 163
>PRK08210 aspartate kinase I; Reviewed
Probab=92.76 E-value=2.6 Score=43.88 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=66.0
Q ss_pred CeEEEEEEeCCC-cchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCc
Q 013090 36 NATVIRVDSANK-HGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSM 114 (449)
Q Consensus 36 ~~t~V~V~~~Dr-~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~ 114 (449)
+...|+|...+. +|.++++...|.++|+||.-...+.. . -.|.+.+. ..+.+.+.|....
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~---------~~~~a~~~l~~~~------ 330 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE---------DSEKAKEILENLG------ 330 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH---------HHHHHHHHHHHhC------
Confidence 445677776555 99999999999999999996643322 1 24555321 1223334443321
Q ss_pred ceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEE
Q 013090 115 RSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVS 155 (449)
Q Consensus 115 ~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~ 155 (449)
..+. ...+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 331 ~~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 331 LKPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CcEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 0111 2345667778875 7899999999999999999974
No 164
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.59 E-value=0.47 Score=42.80 Aligned_cols=46 Identities=15% Similarity=0.449 Sum_probs=37.2
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC--ceEEEEEEe
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVT 172 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~--~~~dvf~V~ 172 (449)
-+.+.+.++||.|.++++++++.|.||..|+.+..++ .+.--|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 4778899999999999999999999999999987433 444444444
No 165
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.56 E-value=0.73 Score=35.12 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=40.0
Q ss_pred EEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 013090 263 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 328 (449)
Q Consensus 263 ~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 328 (449)
.|.-+||||=|..++..+.. |.||.+-+-...+.....+++.....+ .+..+++.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 57789999999999999999 999998665444322223344433222 2456667766653
No 166
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.55 E-value=0.63 Score=39.78 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=41.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGY 389 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~ 389 (449)
.+.|-+...|+||-|++|-..|+++|||+.+.+....+.. .+=.||| |..|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeC
Confidence 4667777799999999999999999999999998777555 4447777 45553
No 167
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.38 E-value=0.49 Score=44.69 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEee
Q 013090 121 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTD 173 (449)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~ 173 (449)
-..+...+-+.-.|+||.+..|+.+|.++|+||...++.. .++.+..++.+..
T Consensus 144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 3445667788889999999999999999999999999987 4567777776654
No 168
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.36 E-value=0.59 Score=52.04 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=49.4
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+.+++..|-..|+.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999998764 44444444442 234677777776654
No 169
>PRK06635 aspartate kinase; Reviewed
Probab=92.35 E-value=1.8 Score=44.93 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=66.6
Q ss_pred ceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013090 258 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER 332 (449)
Q Consensus 258 ~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~~ 332 (449)
+...|+|. ..++||++.++..+|.+.|++|.....+... ++..=.|.|.. +..+...+.|.+. +.-
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 34455555 4678999999999999999999975443222 12322354421 2233334444432 110
Q ss_pred c----cCCceEEEEEe---CCCcChHHHHHHHHHhCCCcEEEEE
Q 013090 333 R----VSEGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 333 r----~~~~~~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
+ ...-..+++.+ .|+||++++|.++|.++|++|....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 0 12246688876 5899999999999999999998753
No 170
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.15 E-value=0.29 Score=51.17 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=49.7
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
.+.|-+.-.|+||.++.|+.+|.++|+||...++...|+.|--+|.+ ++ +++++.+++|++
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence 48888899999999999999999999999999998888777666666 33 555565566664
No 171
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.12 E-value=0.74 Score=51.46 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=47.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
..|.|.+.||+|||.+|+.++++.++||....+.+. ++.+.-.|-|. +.+-..+..|...|.
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~ 730 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHh
Confidence 588899999999999999999999999999998775 35555455542 333346666666665
No 172
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=91.79 E-value=0.92 Score=50.61 Aligned_cols=73 Identities=3% Similarity=0.058 Sum_probs=50.7
Q ss_pred EEEecCCCCce-eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 013090 249 VNVVNCYDKDY-SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL 326 (449)
Q Consensus 249 V~v~~~~~~~~-tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L 326 (449)
|.++......| +.|.|.+.||+|+|.+|+.++++.++||.+..+.+.+ +.+.-.|-|. +.+-..+..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 34543322233 5888999999999999999999999999999987764 4554444441 22334566666665
Q ss_pred H
Q 013090 327 K 327 (449)
Q Consensus 327 ~ 327 (449)
.
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 5
No 173
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.17 E-value=0.92 Score=50.15 Aligned_cols=66 Identities=26% Similarity=0.362 Sum_probs=49.0
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEE-EEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAA-LMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~d-vf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.-...|.|.+.||+|||++|+.+|+..++||.+....+.+++... .|.+. +.+..++..|-.+|.+
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLARLKQ 691 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHHHhc
Confidence 345779999999999999999999999999999998876555443 33332 2234677777666544
No 174
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=90.84 E-value=0.97 Score=40.82 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=38.3
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEee--cCCceeeEEEEEc
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT--KSGKAVNTFYVGG 385 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T--~g~~~~d~F~v~~ 385 (449)
-+++.+.++||.|.++|.+++++|.||+.+.-.. .|+.+---|.+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 3788899999999999999999999999999543 3556666666643
No 175
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=90.66 E-value=0.83 Score=34.65 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=35.8
Q ss_pred CceEEEEEEeC----CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 123 MDHTAIELTGS----DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 123 ~~~t~i~v~~~----DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
.+...|+|.|+ |.||++++++.+|++.|++|.... |. .-+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence 45677888888 899999999999999999998776 32 246666664
No 176
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.59 E-value=7.2 Score=44.53 Aligned_cols=102 Identities=4% Similarity=0.122 Sum_probs=68.1
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH---
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI--- 330 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l--- 330 (449)
++.+.|.|.+. ++||++.++...|.+.|++|.....++..-.. .|.|.. ...+...+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~---------~d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ---------SDAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH---------HHHHHHHHHHHHHHHHH
Confidence 45678888765 68999999999999999999775544322111 255522 12233333343332
Q ss_pred -hh-cc------CCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090 331 -ER-RV------SEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 331 -~~-r~------~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
.. .. ..-..+.+.+. ++||+++++..+|.+.||+|....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 21 11 22467888875 789999999999999999997544
No 177
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.08 E-value=1.7 Score=48.43 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+.|.|.+.||+|+|.+|+.+|++.++||.+..+.+.. +.+.-.|-| .+.+-..+..|...|.
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i------eV~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV------EIKNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE------EECCHHHHHHHHHHHh
Confidence 5888999999999999999999999999999997773 554333434 1333345666665554
No 178
>PRK09034 aspartate kinase; Reviewed
Probab=89.95 E-value=6.2 Score=41.85 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=67.7
Q ss_pred eEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090 37 ATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS 113 (449)
Q Consensus 37 ~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~ 113 (449)
.+.|++.. ++++|.++++..+|+++|++|.-- . .+. .--.|.|.+.+-. . ..+..+.+.|.....
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~-~sis~~v~~~~~~---~-a~~~~l~~el~~~~~---- 375 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGI-DDLSIIIRERQLT---P-KKEDEILAEIKQELN---- 375 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCC-cEEEEEEeHHHhh---H-HHHHHHHHHHHHhhC----
Confidence 44566654 568999999999999999999864 2 221 2234667543211 0 011223233321110
Q ss_pred cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
...+ ....+...|.+.|. +.||+++++..+|+++|+||....-.+
T Consensus 376 ~~~I--~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 376 PDEL--EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CceE--EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0111 22345677888764 789999999999999999998775444
No 179
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.63 E-value=0.74 Score=47.40 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=39.5
Q ss_pred CceEEEEEeC-CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcC
Q 013090 336 EGLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA 386 (449)
Q Consensus 336 ~~~~l~v~~~-DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~ 386 (449)
..+.|.+.-. |+||-|++|+.+|.++||||.+.++ ......+-.|++.-.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 3577777775 9999999999999999999999998 333344545888533
No 180
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.49 E-value=1 Score=34.20 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=34.1
Q ss_pred CceeEEEEEcC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEE
Q 013090 257 KDYSVVTITSK----DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 306 (449)
Q Consensus 257 ~~~tvv~V~~~----DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~ 306 (449)
.+...|.|.++ |.||+++.+...|++.|++|.... | +..+.++|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence 45567888887 799999999999999999998855 3 333556663
No 181
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.41 E-value=2.6 Score=33.61 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=36.7
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
++.|.-|||||-|++++.+|+ +.||....-.. ..+.+.-.+.+..+ ++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence 578889999999999999999 55665433332 22333333333321 11 3556666665543
No 182
>PRK06382 threonine dehydratase; Provisional
Probab=89.31 E-value=2.1 Score=44.69 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=48.5
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE----c-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW----T-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~----T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.+..+.++|.-+|+||-|++|+.+|.++|+||.+.... . ..+.+.-+|.|... +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999877664 2 23455666666541 13444566665543
No 183
>PLN02551 aspartokinase
Probab=89.04 E-value=12 Score=40.52 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=72.4
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHH---HHHH
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL---KAAI 330 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L---~~~l 330 (449)
++.+.|+|.+. +++|.+.++...|.+.|++|..- .+..... .|.+...+ +.. .+.+++.| ...+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~sI--s~~v~~~~---~~~---~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSI--SLTLDPSK---LWS---RELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCCEE--EEEEehhH---hhh---hhhHHHHHHHHHHHh
Confidence 45578888765 68999999999999999999886 3332221 35553221 111 11222222 2223
Q ss_pred hh--c---cCCceEEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090 331 ER--R---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 383 (449)
Q Consensus 331 ~~--r---~~~~~~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v 383 (449)
++ + ...-..|.+++. .+||+++++-.+|.+.||||.... +|.....+ |.|
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV 491 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIV 491 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEE
Confidence 21 1 123466777764 689999999999999999998776 44444454 555
No 184
>PRK06291 aspartate kinase; Provisional
Probab=88.96 E-value=6 Score=42.05 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+...|+|.+. +.+|.++++.++|.++|++|.-....+.... -.|.|.+.+- +...+.|.+.+....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d~-----~~av~~L~~~~~~~~---- 388 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEADL-----EKALKALRREFGEGL---- 388 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHHH-----HHHHHHHHHHHHHhc----
Confidence 3456777654 6899999999999999999986543332211 1455533110 123344444443210
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
...+ ....+...|.|.|. +++|+++++..+|++.|+||..-.-.
T Consensus 389 -~~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg 435 (465)
T PRK06291 389 -VRDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG 435 (465)
T ss_pred -Ccce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence 0111 22345677888886 68999999999999999999854433
No 185
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=88.77 E-value=0.26 Score=39.54 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEE
Q 013090 39 VIRVDSAN-KHGILLEVVQVLTDLNLIVTKAYI 70 (449)
Q Consensus 39 ~V~V~~~D-r~GLl~~i~~vL~~~gl~I~~A~I 70 (449)
+|+|.+++ ..|++++++++|+++|+||.+-+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 48899999 999999999999999999985443
No 186
>PRK09181 aspartate kinase; Validated
Probab=88.74 E-value=16 Score=39.10 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=74.7
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
++.+.|+|.+. +.+|+..++...|.+.|++|.. +.+..... .|.|.. + . ..++++.+.|...+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~~si--s~~v~~-~---~---~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNANTI--THYLWG-S---L---KTLKRVIAELEKRYPNA 395 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecCcEE--EEEEcC-C---h---HHHHHHHHHHHHhcCCc
Confidence 35677888654 7899999999999999999983 44432222 355522 1 1 2345555556544421
Q ss_pred c--cCCceEEEEEeCC--CcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEE
Q 013090 333 R--VSEGLKLELCTTD--RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYV 383 (449)
Q Consensus 333 r--~~~~~~l~v~~~D--rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v 383 (449)
. ...-..|.+++.. +||+.+++..+|.+.||||.... .|..... .|.|
T Consensus 396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~---qg~se~~Is~vV 448 (475)
T PRK09181 396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH---QSMRQVNMQFVV 448 (475)
T ss_pred eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE---ecCCcceEEEEE
Confidence 1 1334778888754 89999999999999999998766 4444444 3555
No 187
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.72 E-value=2.1 Score=47.42 Aligned_cols=74 Identities=23% Similarity=0.167 Sum_probs=49.7
Q ss_pred EEEecCC-CCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 249 VNVVNCY-DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 249 V~v~~~~-~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
|.+++.. ..-...|.|.+.||+|||.+++++|++.+.||......+.++......+-.. +.+-..+..|...|.
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-----v~n~~~L~~i~~~l~ 690 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-----VKNLNHLGRVLARLK 690 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-----ECcHHHHHHHHHHHh
Confidence 3455543 2344689999999999999999999999999999998886443333333222 223234555555554
No 188
>PRK08210 aspartate kinase I; Reviewed
Probab=88.65 E-value=7.7 Score=40.31 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=65.2
Q ss_pred ceeEEEEEcCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc---
Q 013090 258 DYSVVTITSKDR-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--- 333 (449)
Q Consensus 258 ~~tvv~V~~~Dr-pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r--- 333 (449)
+...|+|.+.+. ||.++++...|.+.|++|.....+. .. =.|.+.. ...+.+.+.|.+. ...
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~ 335 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPSV 335 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence 445777776665 9999999999999999999874432 22 1355521 1233444444431 111
Q ss_pred cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEE
Q 013090 334 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR 367 (449)
Q Consensus 334 ~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~ 367 (449)
...-..+.|.+. ++||+++++..+|.+.|++|..
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 123467778875 8999999999999999999974
No 189
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.59 E-value=3.1 Score=32.27 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=37.2
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 173 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~ 173 (449)
.|.+..+|+||-|+++-..|+.+|+|+..-+..... ....=.|||.-
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 355566899999999999999999999988876643 34556777774
No 190
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.52 E-value=0.85 Score=47.67 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=44.6
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
....|.+.-.|+||.+++|+.+|+++|+||...+.++.++.+..+|.+..
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence 56778889999999999999999999999999999998888888877654
No 191
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.14 E-value=1.4 Score=47.60 Aligned_cols=63 Identities=16% Similarity=0.372 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
++.|-+.-.|+||.+..|+.+|.+++|||...++........-+..+. .+.+++.+.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~--~D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS--VDDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE--CCCCCCHHHHHHHhc
Confidence 455656678999999999999999999999999876533333333332 245777876677775
No 192
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.01 E-value=1.8 Score=44.25 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 384 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~ 384 (449)
-+.|.|.-+||||-|+.|+..+.+.||||.+.+|.-.-+....+..++
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 499999999999999999999999999999999865545555566664
No 193
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.94 E-value=2.2 Score=33.35 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=37.3
Q ss_pred EEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 173 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~ 173 (449)
+.+..+|+||-|+++-..|+.+|+|+..-+.... +....=.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4555689999999999999999999998887763 444567788874
No 194
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.76 E-value=12 Score=39.30 Aligned_cols=101 Identities=12% Similarity=0.177 Sum_probs=64.4
Q ss_pred ceeEEEEEcCC-C-cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 013090 258 DYSVVTITSKD-R-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-- 333 (449)
Q Consensus 258 ~~tvv~V~~~D-r-pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r-- 333 (449)
+...|+|.+.+ . +|++.++...|.+.|++|......+..... .|.| +. ...+...+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I-~~--------~~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTV-DK--------EDADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEE-EH--------HHHHHHHHHHHHHHHhcCc
Confidence 45667777654 3 799999999999999999876533322111 2444 22 11222222232211111
Q ss_pred -----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090 334 -----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 334 -----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
...-..+.+.+. ++||+++++..+|.+.||+|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 123467888653 789999999999999999997765
No 195
>PRK06382 threonine dehydratase; Provisional
Probab=87.32 E-value=3.1 Score=43.43 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090 320 ERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 371 (449)
Q Consensus 320 ~~l~~~L~~~l~~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~ 371 (449)
..+.+.+...+. ...+.+.+.|.-.|+||-|.+|+.+|.++|+||.+....
T Consensus 314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 345555555553 223568899999999999999999999999999988754
No 196
>PLN02317 arogenate dehydratase
Probab=87.09 E-value=2.6 Score=43.50 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=43.4
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc---------------eeeEEEEEcCCCCCCCHH
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK---------------AVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~---------------~~d~F~v~~~~g~p~~~~ 394 (449)
+.|-+.-.|+||-|+++-.+|+.+|||+++.+......+ .+=+||| |..|..-++.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~~ 354 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADPR 354 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCHH
Confidence 566666789999999999999999999999997655333 3448888 5667555555
No 197
>PRK14630 hypothetical protein; Provisional
Probab=87.07 E-value=5.9 Score=35.20 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT- 345 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~- 345 (449)
|.-.+-..+..++..+|+.+.+......+ +..+- .||...+|-.+ +..+.+.+.+...|....+..|.|||+++
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lr-V~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG 81 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQ-IVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPG 81 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence 44456667788899999999999988875 45554 44533344223 46788888888777765678899999974
Q ss_pred -CCcChHHHHHHHHHhCC
Q 013090 346 -DRVGLLSNVTRIFRENS 362 (449)
Q Consensus 346 -DrpGLL~~it~~l~~~~ 362 (449)
||| |.....+-+-.|
T Consensus 82 ldRp--L~~~~df~r~~G 97 (143)
T PRK14630 82 INRK--IKSDREFKIFEG 97 (143)
T ss_pred CCCc--CCCHHHHHHhCC
Confidence 666 333334433333
No 198
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=86.81 E-value=1.5 Score=47.35 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
++.|-+.-.|+||.+..|+.+|.+++|||...++........-+..+. ...+++.+.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~--~D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLS--LDQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEE--cCCCCCHHHHHHHhc
Confidence 455656668999999999999999999999999875533333333332 244778877777775
No 199
>PRK06349 homoserine dehydrogenase; Provisional
Probab=86.08 E-value=3.2 Score=43.57 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=46.8
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.|.|.+...|+||.|++|+.+|.++++||.+..-....+...+++++++.. +...+.++.++|..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 588999999999999999999999999999886543323345677776432 33444555555554
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.07 E-value=5.9 Score=31.56 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=36.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 261 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 261 vv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
++.|.-+||||=|..++..|. +.||.+..-...+ +.+. ..++....+. .+..+.+.+.|.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~-v~i~ie~~~~----~~~~~~i~~~L~ 63 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAH-IFVGVSVANG----AEELAELLEDLK 63 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeE-EEEEEEeCCc----HHHHHHHHHHHH
Confidence 578889999999999999999 5666654443332 3332 2333232220 235566666665
No 201
>PRK09034 aspartate kinase; Reviewed
Probab=85.85 E-value=15 Score=39.00 Aligned_cols=105 Identities=12% Similarity=0.222 Sum_probs=67.5
Q ss_pred CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
++.+.|++.+ .++||+++++...|++.|++|..- . .+..- =.|+|...+ +.. ..+..+.+.|...+..
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~~s-is~~v~~~~---~~~-a~~~~l~~el~~~~~~~ 377 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGIDD-LSIIIRERQ---LTP-KKEDEILAEIKQELNPD 377 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCCcE-EEEEEeHHH---hhH-HHHHHHHHHHHHhhCCc
Confidence 3456777774 678999999999999999999885 2 22222 236663211 110 0113333334332210
Q ss_pred c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEE
Q 013090 333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
. ...-..+.+.+. ++||+++++..+|.++||+|....
T Consensus 378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIs 420 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMIN 420 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 0 123467888763 789999999999999999998775
No 202
>PRK06545 prephenate dehydrogenase; Validated
Probab=85.55 E-value=2.6 Score=43.16 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=41.9
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~ 172 (449)
-..++.|.|.-+||||-+++|+..|...|+||.+-+|.-.-+...-++.++
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 346788999999999999999999999999999999976444444455554
No 203
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.12 E-value=1.1 Score=43.05 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcC-CCCCCCHHHHHHHHHHhcc
Q 013090 335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA-SGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~-~g~p~~~~~~~~lr~~l~~ 405 (449)
+++.++.+--.|-||+|+.|+.+|+.+|.||.++-+.-. +.++.|..|-. .| .+..+++.+++|+.
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t--evk~LsrmTIVl~G---td~VveQa~rQied 141 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT--EVKALSRMTIVLQG---TDGVVEQARRQIED 141 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeech--hhhhhhhceEEEec---cHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999986533 34555522211 23 33445777777776
No 204
>PRK14646 hypothetical protein; Provisional
Probab=84.74 E-value=11 Score=34.04 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=61.2
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEeC--
Q 013090 271 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCTT-- 345 (449)
Q Consensus 271 gLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~~-- 345 (449)
.+...+...+.++|+.+.+..+...+ ...+- .||...+|..++ -+..+.+.+.+.+.|. ...+..|.|||+++
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~Lr-V~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIK-IIIKKTNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 45667788899999999999999885 45554 445333343343 2567888888888886 34577899999975
Q ss_pred CCcChHHHHHHHHHhCCC
Q 013090 346 DRVGLLSNVTRIFRENSL 363 (449)
Q Consensus 346 DrpGLL~~it~~l~~~~i 363 (449)
||| |..--.+-+-.|=
T Consensus 86 dRp--L~~~~df~r~~G~ 101 (155)
T PRK14646 86 SDE--LTSERDFKTFKGF 101 (155)
T ss_pred CCc--CCCHHHHHHhCCC
Confidence 665 5545555555454
No 205
>PRK14634 hypothetical protein; Provisional
Probab=84.72 E-value=10 Score=34.07 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC-
Q 013090 270 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT- 345 (449)
Q Consensus 270 pgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~- 345 (449)
..+-..+..++.++|+.+.+..+...| +..+- .||...+|..++ -+..+.+.+.+.+.|.. ..+..|.|||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lr-V~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQ-VQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEE-EEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 455666777889999999999998885 45554 445444564343 35778888888888863 3567899999974
Q ss_pred -CCcChHHHHHHHHHhCC
Q 013090 346 -DRVGLLSNVTRIFRENS 362 (449)
Q Consensus 346 -DrpGLL~~it~~l~~~~ 362 (449)
||| |..--.+-+-.|
T Consensus 85 ldRp--L~~~~~f~r~~G 100 (155)
T PRK14634 85 IGDQ--LSSDRDFQTFRG 100 (155)
T ss_pred CCCc--CCCHHHHHHhCC
Confidence 676 433334444434
No 206
>PLN02551 aspartokinase
Probab=84.61 E-value=34 Score=37.00 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=67.7
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+.+.|+|.+. +.+|.++++...|.++|++|.-- .+.. .--.|.|...+-.. .+...+.+.+.+.+.. .
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~---~ 435 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEELE---K 435 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhh---c
Confidence 4567777655 68999999999999999999854 2322 11246664432111 0001111211111110 0
Q ss_pred CcceeeccCCCceEEEEEEeC--CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 113 SMRSVGVKQSMDHTAIELTGS--DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
. ..+. ...+...|.|+|. ..||+++++..+|++.|+||..-...+
T Consensus 436 ~-~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 436 I-AVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred C-CeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 0 1122 2345667777765 689999999999999999998765444
No 207
>PRK09181 aspartate kinase; Validated
Probab=84.11 E-value=11 Score=40.22 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=67.8
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+.+.|+|.+. +.+|+.+++...|.++|++|. .+.+.. .--.|.|.+. . ...+.+.+.|.....
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~--- 393 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYP--- 393 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcC---
Confidence 5566777543 689999999999999999997 333322 1224555332 1 122333333432210
Q ss_pred CcceeeccCCCceEEEEEEeCC--ccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 113 SMRSVGVKQSMDHTAIELTGSD--RPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~D--rpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
...+. . .+...|.++|.. +||+.+++..+|++.|+||..-.-.
T Consensus 394 -~~~i~--~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 394 -NAEVT--V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred -CceEE--E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 01122 2 456788888765 8999999999999999999765543
No 208
>PRK11899 prephenate dehydratase; Provisional
Probab=84.06 E-value=6.5 Score=38.93 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=42.2
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCC
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGG 178 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~ 178 (449)
.|.|-+..+|+||.|+++-.+|+.+|+|+.+-+..-. ++-..=+|||.- .|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence 5777777799999999999999999999999888754 444566888875 354
No 209
>PRK14636 hypothetical protein; Provisional
Probab=83.60 E-value=10 Score=34.90 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=55.9
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEe
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCT 344 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~ 344 (449)
|.+.+...+..++.++|+.+.+..+...+ ...+-+| |...+|..++ -...+.+.+.|...|. ...+..|.|||++
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~-ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSS 80 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIM-AERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSS 80 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEE-EECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeC
Confidence 34456667788899999999999988875 4555444 5333333343 2577888888888886 2356789999997
Q ss_pred C--CCc
Q 013090 345 T--DRV 348 (449)
Q Consensus 345 ~--Drp 348 (449)
+ |||
T Consensus 81 PGldRp 86 (176)
T PRK14636 81 PGIDRP 86 (176)
T ss_pred CCCCCC
Confidence 5 666
No 210
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=83.34 E-value=40 Score=35.76 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090 35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~ 111 (449)
.+.+.|+|... .++|.++++.+.|.++|+||.--........ -.|.|...+. +...+.+++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 34556666643 3459999999999999999974433322223 4677743221 1233444444433211
Q ss_pred CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090 112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.+. ...+.-.|.++|. ..||..+++..+|++.++||....
T Consensus 376 ----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 ----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred ----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 121 2234556777765 468999999999999999999877
No 211
>PRK08198 threonine dehydratase; Provisional
Probab=83.26 E-value=7.6 Score=40.34 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
......+.|.-+|+||-|+++...++++|.||......
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44566899999999999999999999999999988765
No 212
>PRK12483 threonine dehydratase; Reviewed
Probab=83.05 E-value=39 Score=36.53 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=76.3
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-c-c
Q 013090 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-F-A 111 (449)
Q Consensus 35 ~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~-~ 111 (449)
+....+.|.-+||||-|.+++.+|... ||.+.+-... .+. ..++...+-.+. +..++.|.+.|.+..- . .
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence 345678899999999999999999988 8876555432 233 334433332111 2233677777765432 0 0
Q ss_pred CC---------cceeec-c-CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEE
Q 013090 112 SS---------MRSVGV-K-QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQ 170 (449)
Q Consensus 112 ~~---------~~~V~~-~-~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~ 170 (449)
.+ |..|+= . ....--.+.|.-|.|||-|.+.+.+|... .||....=.-++.....+|.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v 484 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA 484 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence 01 112221 1 12344578888999999999999999852 44544443334544444543
No 213
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.03 E-value=7.9 Score=39.85 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE---c--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW---T--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~---T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
......+.|.-+||||.|++++..++++|.||.+..-. . ..+.+.-.+.+... +++..+.|.+.|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 34455899999999999999999999999999887544 1 22444444554431 13555666666543
No 214
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=82.85 E-value=18 Score=41.31 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090 35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~ 111 (449)
.+.+.|+|.+. +++|.++++...|.++|++|.-....+.. . --.|.|.+.+. +...+.|.+.+....
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~-sIsf~V~~~d~-----~~av~~L~~~f~~el--- 382 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-Y-SISFCVPQSDA-----AKAKRALEEEFALEL--- 382 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-c-eEEEEEeHHHH-----HHHHHHHHHHHHHHh---
Confidence 35567778654 67999999999999999999755443322 1 12455643211 112333444332111
Q ss_pred CCccee-eccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 112 SSMRSV-GVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 112 ~~~~~V-~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
....+ .+....+...|.+.|. ++||+++++..+|.+.|+||..-.-.
T Consensus 383 -~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg 433 (819)
T PRK09436 383 -KEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG 433 (819)
T ss_pred -ccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 00011 1122345778888886 68999999999999999999866433
No 215
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=82.62 E-value=6.8 Score=38.67 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=41.4
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~ 173 (449)
..|.|-+..+|+||-|+++-.+|+.+|+|...-+..-.. +-..=.|||.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 478888888899999999999999999999988877644 44556777764
No 216
>PRK09084 aspartate kinase III; Validated
Probab=82.60 E-value=17 Score=38.47 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=62.6
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+...|+|.+. +.+|.++++..+|.++|++|.--. +.. .--.|.|.+.+-..-......+.+.+.|...
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~----- 375 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQL----- 375 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence 4557777654 688999999999999999998543 211 1224666443211100011223343344321
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCC
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKC 151 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~ 151 (449)
..+. -..+...|.+.|. ++||+++++..+|++.++
T Consensus 376 --~~i~--~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 --CRVE--VEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred --CeEE--EECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1122 2345678888886 689999999999987533
No 217
>PRK08818 prephenate dehydrogenase; Provisional
Probab=82.07 E-value=3.2 Score=42.79 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=38.2
Q ss_pred ceEEEEEEeC-CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 124 DHTAIELTGS-DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~-DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .+.....-.|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 4667777776 9999999999999999999999999 33322333388874
No 218
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=81.58 E-value=16 Score=38.48 Aligned_cols=108 Identities=24% Similarity=0.277 Sum_probs=64.6
Q ss_pred CeEEEEEEeCCC--cchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090 36 NATVIRVDSANK--HGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS 113 (449)
Q Consensus 36 ~~t~V~V~~~Dr--~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~ 113 (449)
+...|+|.+.+- +|.++++...|.++|++|.-....+.. .. -.|.|...+ .+...+.|...... ..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~---------~~~a~~~L~~~~~~-~~ 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED---------ADQAKTLLKSELNL-SA 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH---------HHHHHHHHHHHHHh-cC
Confidence 344566654332 799999999999999999865433322 11 245554321 11112222111000 00
Q ss_pred cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090 114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
-..+ ....+...|++.|. +.||++++|..+|++.|+||....
T Consensus 369 ~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0111 23345677888764 789999999999999999997765
No 219
>PRK11898 prephenate dehydratase; Provisional
Probab=81.48 E-value=6.1 Score=39.18 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=58.9
Q ss_pred HhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-CCcChHHHHHHHH
Q 013090 281 TDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-DRVGLLSNVTRIF 358 (449)
Q Consensus 281 ~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~-DrpGLL~~it~~l 358 (449)
...|+.|..-.|... +++. .|+|......+... ......+.|-+... |+||-|+++-.+|
T Consensus 157 ~~ygL~il~~~I~d~~~N~T--RF~vi~~~~~~~~~----------------~~~~~ktslif~l~~~~pGsL~~~L~~F 218 (283)
T PRK11898 157 ELYGLEILAEDIQDYPNNRT--RFWLLGRKKPPPPL----------------RTGGDKTSLVLTLPNNLPGALYKALSEF 218 (283)
T ss_pred HHcCCcEehhcCCCCCccce--EEEEEEcCcccCCC----------------CCCCCeEEEEEEeCCCCccHHHHHHHHH
Confidence 345777777666554 3444 47776543220000 00111345555554 4699999999999
Q ss_pred HhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090 359 RENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 359 ~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~ 394 (449)
+++|||+++.+...... ..+=.||| |..|..-++.
T Consensus 219 ~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~~~~~ 254 (283)
T PRK11898 219 AWRGINLTRIESRPTKTGLGTYFFFI-DVEGHIDDVL 254 (283)
T ss_pred HHCCCCeeeEecccCCCCCccEEEEE-EEEccCCCHH
Confidence 99999999999776544 45558888 5667544434
No 220
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=81.33 E-value=5.4 Score=41.82 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=41.5
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEEcCCCCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYP 390 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~~~~g~p 390 (449)
.+.|-+...|+||-|++|-.+|+++|||+.+.+..... ...+=.|+|. ..|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc
Confidence 35677777999999999999999999999999976543 3355588884 55543
No 221
>PRK14645 hypothetical protein; Provisional
Probab=81.30 E-value=20 Score=32.18 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC-
Q 013090 270 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT- 345 (449)
Q Consensus 270 pgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~- 345 (449)
..+-..+..++..+|+.+.+..+...+ ...+-+ ||...+|..++ -+..+.+.+.+.+.|.. ..+..|.|||+++
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV-~ID~~~~~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLV-RIDRKDEQPVT-VEDLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEE-EEECCCCCCcC-HHHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 346667788899999999999998875 455544 45323344453 35778888888888863 2467899999974
Q ss_pred -CCcChHHHHHHHHHhCC
Q 013090 346 -DRVGLLSNVTRIFRENS 362 (449)
Q Consensus 346 -DrpGLL~~it~~l~~~~ 362 (449)
||| |...-.+-+-.|
T Consensus 87 ldRp--L~~~~df~r~~G 102 (154)
T PRK14645 87 PKRP--LFTARHFERFAG 102 (154)
T ss_pred CCCC--CCCHHHHHHhCC
Confidence 666 444555555555
No 222
>PRK06349 homoserine dehydrogenase; Provisional
Probab=80.97 E-value=7.9 Score=40.66 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
....+-|.+...|+||.|++|+.+|.+++++|.+.......+....++.+++
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3445788999999999999999999999999998766554445567777776
No 223
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=80.62 E-value=21 Score=32.41 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=63.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDG-CWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMR 115 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~ 115 (449)
..+.+.-.|.||.|.++++.|+..|+||.+-.+. |++ +..--++.+ .. ++...++|.+.|...... .+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~g------~~~~~EQi~kQL~kLidV---~k 74 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-SG------DEQVLEQIIKQLNKLIDV---LK 74 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-cC------CcchHHHHHHHHHhhccc---ee
Confidence 4677888999999999999999999999988886 643 433333333 22 123456666666654321 01
Q ss_pred eeecc----CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEE
Q 013090 116 SVGVK----QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 116 ~V~~~----~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.++.. -..+--.+.+.++--. ..++.+...-++.+|.+..
T Consensus 75 V~d~~~~~~veRel~LiKv~~~~~~--R~ei~~~~~ifr~~vvDvs 118 (163)
T COG0440 75 VLDLTSEPHVERELALIKVSAEGSE--RGEIARITEIFRASVVDVS 118 (163)
T ss_pred EEEcCCcchhheeeEEEEEecCccc--hHHHHHHHHHhCceEEecC
Confidence 11111 1112233444432221 5567777777777776554
No 224
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.48 E-value=3.7 Score=44.35 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=46.8
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE 191 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~ 191 (449)
..+...+-+.-.|+||.+..|+.+|.++++||...++.. .++.+.-++.+.. +++ ++.+++|++
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~-----~v~-~~~l~~i~~ 514 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD-----PVP-EEVLEELRA 514 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC-----CCC-HHHHHHHhc
Confidence 345566667779999999999999999999999999886 4566666666543 243 455555543
No 225
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=79.89 E-value=3.8 Score=39.54 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=38.5
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEE--EEEEee
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAA--LMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~d--vf~V~~ 173 (449)
...+|.+.-.|-||.+++|+++|+..|.||.+.-+--....+.. +..+..
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G 127 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG 127 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence 34678888899999999999999999999999887654444333 445543
No 226
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=79.81 E-value=4.9 Score=36.36 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
...+.+.-.|.||.|+.++..|.++|.||.+..+...... ...+=.++ .| +...++++..++..
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g---~~~~~EQi~kQL~k 68 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG---DEQVLEQIIKQLNK 68 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC---CcchHHHHHHHHHh
Confidence 3467888899999999999999999999999997643222 33333333 23 44445677776665
No 227
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.63 E-value=7.5 Score=33.16 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=38.8
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC-ceEEEEEEee
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAAALMQVTD 173 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~-~~~dvf~V~~ 173 (449)
.+.+.+..+|+||-|++|-..|+.+|+|+..-+.....+ ...=.|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 466777779999999999999999999999888776433 3345677764
No 228
>PRK14640 hypothetical protein; Provisional
Probab=78.71 E-value=23 Score=31.73 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--C
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--D 346 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--D 346 (449)
+-..+...+..+|+.+.+..+...+ +..+- .||...+| + +-+..+.+.++|.+.|.. ..+..|.|||+++ |
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lr-V~ID~~~g--v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLR-VYIDGENG--V-SVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEE-EEEECCCC--C-CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 4556677889999999999998875 45554 44533344 3 235778888999888863 3467899999975 6
Q ss_pred CcChHHHHHHHHHhCCCc
Q 013090 347 RVGLLSNVTRIFRENSLT 364 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~ 364 (449)
|| |...-.+-+-.|=.
T Consensus 84 Rp--L~~~~~f~r~~G~~ 99 (152)
T PRK14640 84 RP--LFKVAQFEKYVGQE 99 (152)
T ss_pred Cc--CCCHHHHHHhCCCe
Confidence 66 55555555555543
No 229
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.69 E-value=3.6 Score=44.47 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=46.4
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE 191 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~ 191 (449)
.+...+-+.-.|+||.+..|+.+|.++++||...++.. .++.+..++.+.. +++ ++.+++|++
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~-----~v~-~~~l~~i~~ 513 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ-----PVP-DEVLEEIKA 513 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC-----CCC-HHHHHHHhc
Confidence 44555666779999999999999999999999998876 4566776666654 243 345555543
No 230
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=77.62 E-value=14 Score=37.99 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090 321 RVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 371 (449)
Q Consensus 321 ~l~~~L~~~l~~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~ 371 (449)
.+...++..+.+ ..+...+.|.-+||||.|++++..+.++|.||.+..-.
T Consensus 290 ~l~~vi~~gl~~-~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 290 LLNKIIEKGLVK-SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 344444444432 23456899999999999999999999999999988643
No 231
>PRK14647 hypothetical protein; Provisional
Probab=77.12 E-value=27 Score=31.51 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--C
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--D 346 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--D 346 (449)
+-..+..++.++|+.+.+..+...|+ ..+-+ || |.+|. + +-+..+.+.+.+.+.|.. ..+..|.|||+++ |
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV-~I-D~~~g-v-slddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRL-FI-DKEGG-V-NLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEE-EE-eCCCC-C-CHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 44456677889999999999998854 55544 45 43332 3 225778888888888863 3567899999975 6
Q ss_pred CcChHHHHHHHHHhCC
Q 013090 347 RVGLLSNVTRIFRENS 362 (449)
Q Consensus 347 rpGLL~~it~~l~~~~ 362 (449)
|| |...-.+-+-.|
T Consensus 86 Rp--L~~~~~f~r~~G 99 (159)
T PRK14647 86 RP--LKKEADYERYAG 99 (159)
T ss_pred Cc--CCCHHHHHHhCC
Confidence 66 333334444433
No 232
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.77 E-value=26 Score=25.54 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=26.3
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCceEEEEEE
Q 013090 261 VVTITS---KDRPKLVFDTVCTLTDMQYVVFHANI 292 (449)
Q Consensus 261 vv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i 292 (449)
.|.+.| ++.||+++++.++|.+.|++|.--..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 456666 47899999999999999999976543
No 233
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.48 E-value=19 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=27.9
Q ss_pred EEEEEe---CCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 127 AIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 127 ~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
.|.+.| ++.||++++|..+|++.|++|......+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 566776 4789999999999999999997765433
No 234
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.17 E-value=14 Score=28.71 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.5
Q ss_pred CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 345 ~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.+.||++++|-.+|.++||++...- + ++ ..=.|.+.... .-++.+.+.+|.++|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 4789999999999999999999884 2 33 22255553222 11344346677777766
No 235
>PRK14639 hypothetical protein; Provisional
Probab=76.01 E-value=25 Score=31.05 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=56.0
Q ss_pred HHHHHHhCCceEEEEEEEecCC-eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--CCcCh
Q 013090 276 TVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--DRVGL 350 (449)
Q Consensus 276 i~~~L~~~gl~I~~A~i~t~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--DrpGL 350 (449)
+-.++.++|+.+.+......++ ..+- .+| |.+|. ++ -+..+.+.+.+.+.|.. ..+..|.|||+++ |||
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lr-V~I-d~~~g-v~-iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~Rp-- 76 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYR-VYI-TKEGG-VN-LDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERK-- 76 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEE-EEE-eCCCC-CC-HHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCc--
Confidence 3457889999999999998854 5554 445 44433 43 35788888889888863 3467899999975 666
Q ss_pred HHHHHHHHHhCCCc
Q 013090 351 LSNVTRIFRENSLT 364 (449)
Q Consensus 351 L~~it~~l~~~~i~ 364 (449)
|...-.+-+-.|-.
T Consensus 77 L~~~~~f~r~~G~~ 90 (140)
T PRK14639 77 LSKIEHFAKSIGEL 90 (140)
T ss_pred CCCHHHHHHhCCCE
Confidence 44444444444443
No 236
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=75.87 E-value=4.7 Score=36.30 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS 71 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~ 71 (449)
.+|.....+.||+++.+++.++++|++|..+-..
T Consensus 96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 96 IEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 3444446788999999999999999999976553
No 237
>PRK09084 aspartate kinase III; Validated
Probab=75.83 E-value=30 Score=36.66 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
++...|+|.+. +.+|.+.++...|.+.|++|..-. +.... =.|.|... .. . . .....+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse~s--Is~~i~~~-~~-~-~-~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSEVS--VSLTLDTT-GS-T-S-TGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccCcE--EEEEEech-hh-h-h-hhhHHHHHHHHHHHhcC
Confidence 45568888765 689999999999999999998864 22211 13555321 10 1 0 0112232333333331
Q ss_pred -c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090 333 -R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 383 (449)
Q Consensus 333 -r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v 383 (449)
+ .+.-..+.+.+. ++||+.+++..+|.+.++. +-.+|.....+ |.|
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~-----~I~qgsSe~sIS~vV 429 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNIR-----MICYGASSHNLCFLV 429 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCeE-----EEEEcCCCCcEEEEE
Confidence 1 123467888885 7899999999999874332 23355555554 455
No 238
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=75.77 E-value=60 Score=34.41 Aligned_cols=113 Identities=10% Similarity=0.126 Sum_probs=70.6
Q ss_pred CceeEEEEEcCC---CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITSKD---RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~~D---rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
.+.+.|+|.+.. ++|.+.++...|.+.|++|..-........ =.|++... ......+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence 455677777553 469999999999999999987443332222 23666221 122233333333321
Q ss_pred --c--cC-CceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090 333 --R--VS-EGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 384 (449)
Q Consensus 333 --r--~~-~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~ 384 (449)
+ .. .--.+.+.+. ..||+.+.+..+|.+.+|||.... -....=.|.|.
T Consensus 374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~ 429 (447)
T COG0527 374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVD 429 (447)
T ss_pred cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEc
Confidence 1 11 1356777764 679999999999999999998876 11223467773
No 239
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=75.72 E-value=5.6 Score=41.93 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=40.6
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc-ee-eEEEEEcCCCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AV-NTFYVGGASGY 389 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~-d~F~v~~~~g~ 389 (449)
.+.|-+...|+||-|+++-.+|+++|||+.+.+......+ .+ =.|+|. ..|.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~ 84 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELF 84 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcC
Confidence 3666666789999999999999999999999997766444 34 478884 4454
No 240
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=75.64 E-value=32 Score=30.78 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--C
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--D 346 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--D 346 (449)
+-..+..++..+|+.+.+..+...+ ...+.+| | |.++. + +-+..+.+.+.+.+.|.. ..+..|.|||+++ |
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~-I-d~~~g-v-~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIY-I-DKEGG-I-DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEE-E-ECCCC-C-CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 4455677889999999999999884 4555444 4 43332 3 335788888888888863 2457899999975 6
Q ss_pred Cc
Q 013090 347 RV 348 (449)
Q Consensus 347 rp 348 (449)
||
T Consensus 85 Rp 86 (154)
T PRK00092 85 RP 86 (154)
T ss_pred Cc
Confidence 66
No 241
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.98 E-value=22 Score=27.71 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred EEEEE---eCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHH-HHHHHhcc
Q 013090 339 KLELC---TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIID-SIRQSIGQ 405 (449)
Q Consensus 339 ~l~v~---~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~-~lr~~l~~ 405 (449)
.+++. ..++||++++|-.+|.++||+|...- + ++ ..=.|.+... .....+... +|.++|+.
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence 45663 36889999999999999999999874 2 33 2235556432 122222233 67777766
No 242
>PRK08198 threonine dehydratase; Provisional
Probab=74.12 E-value=21 Score=37.09 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=33.1
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA 294 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t 294 (449)
.....+.|.-+|+||-|..+...+.+.|.||.+.....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 34458899999999999999999999999999877653
No 243
>PRK12483 threonine dehydratase; Reviewed
Probab=73.93 E-value=97 Score=33.55 Aligned_cols=135 Identities=8% Similarity=0.060 Sum_probs=82.5
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHH-HHHHHHHHHHH-h---
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAER-ERVIQCLKAAI-E--- 331 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~-~~l~~~L~~~l-~--- 331 (449)
.....+.|.-+||||-|.+++..|... ||.+..-......-..+++.....+ .+.. ++|.+.|++.= .
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence 345678899999999999999999988 7776554444322234454444322 1243 67777775421 0
Q ss_pred ----------------hccC---CceEEEEEeCCCcChHHHHHHHHHh-CCCcEEEEEEeecCCceeeEEEEEcCCCCCC
Q 013090 332 ----------------RRVS---EGLKLELCTTDRVGLLSNVTRIFRE-NSLTVTRAEVATKSGKAVNTFYVGGASGYPV 391 (449)
Q Consensus 332 ----------------~r~~---~~~~l~v~~~DrpGLL~~it~~l~~-~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~ 391 (449)
-+.+ +.-.+.+.=+.|||=|.++.+.|.. .+|+..+=+. .|.....+|.=-. +
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~vgi~-----~ 488 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLAGLQ-----V 488 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEEEEe-----e
Confidence 0111 3467888889999999999999987 3666655552 2445555653211 1
Q ss_pred CHHHHHHHHHHhcc
Q 013090 392 DAKIIDSIRQSIGQ 405 (449)
Q Consensus 392 ~~~~~~~lr~~l~~ 405 (449)
..+..+++.+.|.+
T Consensus 489 ~~~~~~~~~~~l~~ 502 (521)
T PRK12483 489 PEDERAALDAALAA 502 (521)
T ss_pred ChhHHHHHHHHHHH
Confidence 22334566666654
No 244
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.80 E-value=28 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=28.1
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
.|.+.|. ++||+++++..+|++.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5667765 689999999999999999998775544
No 245
>PRK14633 hypothetical protein; Provisional
Probab=73.05 E-value=42 Score=30.02 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--CC
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--DR 347 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--Dr 347 (449)
+-..+..++.++|+.+.+..+...++..+-+| |...+| + +-+..+.+.+.+...|.. ..+..|.|||+++ ||
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~G--v-~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENG--V-SVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCC--C-CHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 44556778999999999999988766666444 433344 3 235778888888888863 3467899999975 66
Q ss_pred cChHHHHHHHHHhCCC
Q 013090 348 VGLLSNVTRIFRENSL 363 (449)
Q Consensus 348 pGLL~~it~~l~~~~i 363 (449)
| |.....+-+-.|=
T Consensus 82 p--L~~~~~f~r~~G~ 95 (150)
T PRK14633 82 Q--IFNIIQAQALVGF 95 (150)
T ss_pred C--CCCHHHHHHhCCC
Confidence 6 4445555555443
No 246
>PRK14637 hypothetical protein; Provisional
Probab=72.83 E-value=39 Score=30.23 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEeC-
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV-SEGLKLELCTT- 345 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~-~~~~~l~v~~~- 345 (449)
--|-...+..++.++|+.+.+..+...+ +..+-+| | |.+|. ++ -+..+++.+.+.+.|..-. +..|.|||+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-I-D~~~g-V~-iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-I-YSAGG-VG-LDDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-E-ECCCC-CC-HHHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 3567778889999999999999999885 4566544 4 44433 32 3567888888877775322 35689999974
Q ss_pred -CCcChHHHHHHHHHhCC
Q 013090 346 -DRVGLLSNVTRIFRENS 362 (449)
Q Consensus 346 -DrpGLL~~it~~l~~~~ 362 (449)
||| |...-.+-+-.|
T Consensus 83 ldRp--L~~~~~f~r~~G 98 (151)
T PRK14637 83 IERV--IKNAAEFSIFVG 98 (151)
T ss_pred CCCC--CCCHHHHHHhCC
Confidence 666 333334444333
No 247
>PLN02550 threonine dehydratase
Probab=72.38 E-value=1e+02 Score=34.00 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=73.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc--cCC
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF--ASS 113 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~--~~~ 113 (449)
...+.|.-+||||-|.+++.+|... ||.+.+-.- .-+.+.-.+.|.. .+++..+.|.+.|.+..-. ...
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHCCCCeEeCC
Confidence 3568899999999999999999986 777655432 2233222222321 1334567777777665321 001
Q ss_pred ---------ccee-eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEE
Q 013090 114 ---------MRSV-GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALM 169 (449)
Q Consensus 114 ---------~~~V-~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf 169 (449)
|..+ +-..-..--.+.|.-|.|||-|.+.+.+|.. +.||...+=...++....+|
T Consensus 489 ~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vl 553 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVL 553 (591)
T ss_pred CChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEE
Confidence 1111 1111133456888999999999999998775 24555544444443333333
No 248
>PRK14638 hypothetical protein; Provisional
Probab=72.26 E-value=43 Score=29.92 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--C
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--D 346 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--D 346 (449)
+-.-+...+.++|+.+.+......+ +..+-+ || |.++..++ -+..+.+.+.|.+.|.. ..+..|.|||+++ |
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV-~I-D~~~G~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRI-II-DNPVGYVS-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEE-EE-ECCCCCcC-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 3445667788999999999998875 456544 45 44322242 25778888888888863 3467899999975 6
Q ss_pred CcChHHHHHHHHHhCC
Q 013090 347 RVGLLSNVTRIFRENS 362 (449)
Q Consensus 347 rpGLL~~it~~l~~~~ 362 (449)
|| |...-.+-+-.|
T Consensus 87 Rp--L~~~~~f~r~~G 100 (150)
T PRK14638 87 RP--LRGPKDYVRFTG 100 (150)
T ss_pred CC--CCCHHHHHHhCC
Confidence 66 444444444444
No 249
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=72.19 E-value=27 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.506 Sum_probs=25.1
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeEE
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNVV 154 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I~ 154 (449)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5777776 789999999999999999996
No 250
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=71.60 E-value=19 Score=26.75 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=29.3
Q ss_pred eCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEe
Q 013090 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT 172 (449)
Q Consensus 132 ~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~ 172 (449)
.+|.||.++++..+|+++|++|........ ++...-.|.+.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 478999999999999999999986544332 22233345554
No 251
>PRK14643 hypothetical protein; Provisional
Probab=70.97 E-value=47 Score=30.17 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=58.9
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCC-eeEEEEEEEe---cCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEe
Q 013090 271 KLVFDTVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRH---IDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCT 344 (449)
Q Consensus 271 gLl~~i~~~L~~~gl~I~~A~i~t~g~-~a~d~F~V~~---~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~ 344 (449)
.+-..+..++..+|+.+.+......++ ..+- .||.+ .+| .+ +-+..+.+.+.+.+.|. ...+..|.|||++
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~lr-V~Id~~~~~~g-gv-tldDC~~vSr~is~~LD~~d~i~~~Y~LEVSS 86 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMIQ-ILVEDILQANK-PL-DFDILIKANDLVSNKIDQFIKTSEKYLLEISS 86 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEE-EEEecCCCcCC-Cc-CHHHHHHHHHHHHHHhCccCCCCCCeEEEecC
Confidence 344556677889999999999999854 5554 44533 233 23 22467888888888886 3467789999997
Q ss_pred C--CCcChHHHHHHHHHhCCC
Q 013090 345 T--DRVGLLSNVTRIFRENSL 363 (449)
Q Consensus 345 ~--DrpGLL~~it~~l~~~~i 363 (449)
+ ||| |...-.+-+-.|=
T Consensus 87 PGleRp--L~~~~df~r~~G~ 105 (164)
T PRK14643 87 SGIEKQ--IRSQEELVKALNQ 105 (164)
T ss_pred CCCCCC--CCCHHHHHHhcCC
Confidence 5 555 4444444444444
No 252
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=70.44 E-value=47 Score=38.28 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=63.6
Q ss_pred CeEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVD---SANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~---~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+.+.|+|. ..+.+|.++++...|.++|++|.-- .+.. .--+|.+.+.+. .-..+.++.+.+.|....
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~---- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQIC---- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence 44567775 3468999999999999999999633 3322 111355533221 101223444444443211
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeE
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNV 153 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I 153 (449)
.+.. ..+...|.|+|. .+||+++++..+|++.|+++
T Consensus 391 ---~i~~--~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ---RVKI--IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ---cEEE--eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1221 234577889986 78999999999999987655
No 253
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=69.71 E-value=27 Score=36.27 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.3
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEee
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~ 173 (449)
..|.+-+..+|+||.|+++-.+|+..|+|+.+-+..- .++...=+|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 3666777778999999999999999999999988874 4455667788875
No 254
>PRK14631 hypothetical protein; Provisional
Probab=69.44 E-value=56 Score=29.99 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEec----------------CCCCCCCHHHHHHHHHHHHHHHh--
Q 013090 271 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHI----------------DGSPVKSDAERERVIQCLKAAIE-- 331 (449)
Q Consensus 271 gLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~----------------~g~~l~~~~~~~~l~~~L~~~l~-- 331 (449)
.+...+..++..+|+.+.+..+...+ ...+-+| |... .+.-+ +-+..+.+.+.+.+.|.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~-ID~~~~~~~~~~~~~~~~~~~~~gv-tiddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIY-IDRLVEENAEPVINEDGEVEQGRGI-GVEDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEE-EecCcccccccccccccccccCCCc-CHHHHHHHHHHHHHHhccc
Confidence 35556777889999999999999885 4566554 4221 11223 23567888888888886
Q ss_pred hccCCceEEEEEeC--CCcChHHHHHHHHHhCCC
Q 013090 332 RRVSEGLKLELCTT--DRVGLLSNVTRIFRENSL 363 (449)
Q Consensus 332 ~r~~~~~~l~v~~~--DrpGLL~~it~~l~~~~i 363 (449)
...+..|.|||+++ ||| |.....+-+-.|=
T Consensus 87 d~i~~~Y~LEVSSPGldRp--L~~~~df~r~~G~ 118 (174)
T PRK14631 87 DPISGEYALEVSSPGWDRP--FFQLEQLQGYIGQ 118 (174)
T ss_pred ccCCCCeEEEEeCCCCCCc--CCCHHHHHHhCCC
Confidence 33567899999975 665 5555555555553
No 255
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.44 E-value=16 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=30.6
Q ss_pred eCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEee
Q 013090 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTD 173 (449)
Q Consensus 132 ~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~ 173 (449)
.+|.||.++++..+|+++|++|....... .++...-.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 57899999999999999999997765532 2233344565553
No 256
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=68.57 E-value=6.1 Score=42.62 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 374 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g 374 (449)
.|+|.|.||.|+..+|-..|..++|++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 589999999999999999999999999999987654
No 257
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=68.29 E-value=8.2 Score=34.76 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 126 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 126 t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
..+...-.+.||+++.++..++++||+|..+-..
T Consensus 96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 96 IEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 3344445678999999999999999999988654
No 258
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.12 E-value=41 Score=24.40 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.7
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
.|.+.|. +.+|+++++...|+++|++|......+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666664 789999999999999999997765544
No 259
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=68.05 E-value=46 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCceEE
Q 013090 261 VVTITSK---DRPKLVFDTVCTLTDMQYVVF 288 (449)
Q Consensus 261 vv~V~~~---DrpgLl~~i~~~L~~~gl~I~ 288 (449)
.|.|.|. +.||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4667765 789999999999999999996
No 260
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=67.71 E-value=40 Score=25.94 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=39.4
Q ss_pred EEEEEe---CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 339 KLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 339 ~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.+++.+ .+.||++++|..+|.++|+++...- + ++ ..=.|.+. .....++......|+++|.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~-~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLD-PTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEE-chhhccchHHHHHHHHHHHh
Confidence 466643 5779999999999999999996653 2 22 12244553 22222223345677887776
No 261
>PRK09224 threonine dehydratase; Reviewed
Probab=67.36 E-value=80 Score=34.00 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=72.7
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc--cCC
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF--ASS 113 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~--~~~ 113 (449)
.-..+.|.-|||||-|.+++.+|. +.||..-+-.-.+.-...+|...+-.+. ++..+.|.+.|.+..-. ..+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 355788999999999999999999 6788765543222222234443332111 11256777777654320 001
Q ss_pred ---------cceeec-c-CCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 114 ---------MRSVGV-K-QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 114 ---------~~~V~~-~-~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
|..|+= . ...+...+.|.-|.|||-|.+...+|. -+.||...+=.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 112221 1 122455688999999999999999776 77888888774
No 262
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=67.32 E-value=18 Score=28.75 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=40.5
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeec--CCceeeEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYV 383 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~--g~~~~d~F~v 383 (449)
+|.+++.+.++|+.|..|-|+-+..|..+.....++. ++++.--|.|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 5789999999999999999999999999999887776 5566556666
No 263
>PRK08526 threonine dehydratase; Provisional
Probab=67.26 E-value=36 Score=35.54 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=47.5
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-----CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-----TRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-----~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
......+.+.-+||||-|.+++..+.+.+.||....-.... +.+.-.+.+.. .++++.+.|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999987664422 22332233332 135777777776643
No 264
>PRK14632 hypothetical protein; Provisional
Probab=66.91 E-value=59 Score=29.78 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--CC
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--DR 347 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--Dr 347 (449)
+-..+..++.++|+.+.+..+...+...+-+ || |.++. + +-+..+.+.+.+.+.|.. ..+..|.|||+++ ||
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV-~I-D~~~G-V-~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRL-FV-DGPEG-V-TIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEE-EE-ECCCC-C-CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 4445666788999999999987534455544 45 43322 3 225678888888888862 3467899999974 67
Q ss_pred cChHHHHHHHHHhCC
Q 013090 348 VGLLSNVTRIFRENS 362 (449)
Q Consensus 348 pGLL~~it~~l~~~~ 362 (449)
| |...-.+-+-.|
T Consensus 86 p--L~~~~~f~r~iG 98 (172)
T PRK14632 86 P--FFRAEQMSPYVG 98 (172)
T ss_pred c--CCCHHHHHHhCC
Confidence 6 433444444333
No 265
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.87 E-value=48 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.4
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 013090 261 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDA 294 (449)
Q Consensus 261 vv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t 294 (449)
+|.+.|. ++||+++++...|.+.|++|......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 689999999999999999997765444
No 266
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=66.10 E-value=11 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=26.8
Q ss_pred EEEEEeCC---ccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 127 AIELTGSD---RPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 127 ~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
.|+|.+.+ .+|.++++..+|++++++|.....+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 45666665 8999999999999999999776543
No 267
>PRK09224 threonine dehydratase; Reviewed
Probab=65.70 E-value=2e+02 Score=30.99 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=70.3
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH-h-----
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI-E----- 331 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l-~----- 331 (449)
....+.|.-|||||-|..++..|. +.||.+-+-...+..-..+|+.....+. +...+.|.+.|++.= .
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 356889999999999999999998 5677664443333223345554443221 123677777775421 0
Q ss_pred --------------hccC---CceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe
Q 013090 332 --------------RRVS---EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 371 (449)
Q Consensus 332 --------------~r~~---~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~ 371 (449)
-+.+ ..-.+.+.=+.|||-|.++..+|. -+-||+..+-.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0111 235778888999999998888776 66788888754
No 268
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=64.31 E-value=62 Score=24.82 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=38.8
Q ss_pred EEEEEEe---CCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 126 TAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 126 t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+.|++.| .+.||++++|..+|+++|+++..-- +.+ .--.|.|.. .....+...+..+.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3466643 6789999999999999999996553 322 223444443 2222222355666666655
No 269
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.05 E-value=69 Score=28.80 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=54.1
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--
Q 013090 271 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT-- 345 (449)
Q Consensus 271 gLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~-- 345 (449)
.+..-+-..+.++|+.+.+..+...| +..+.+| + +..|. + +-+..+.+.+.+.+.|.. +.+..|.|||+++
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~-i-d~~g~-v-~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGl 84 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY-I-DKEGG-V-TLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGL 84 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEE-e-CCCCC-C-CHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCC
Confidence 45556667889999999999999996 5776655 3 44333 2 224678888888888863 3456899999974
Q ss_pred CCcC
Q 013090 346 DRVG 349 (449)
Q Consensus 346 DrpG 349 (449)
|||=
T Consensus 85 dRpL 88 (153)
T COG0779 85 DRPL 88 (153)
T ss_pred CCCc
Confidence 7773
No 270
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=62.41 E-value=81 Score=36.36 Aligned_cols=116 Identities=8% Similarity=0.069 Sum_probs=68.2
Q ss_pred CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 013090 257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR 333 (449)
Q Consensus 257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r 333 (449)
++.+.|+|.+ .+.+|+++++...|++.|++|..- .+..... +|.+.+. . .......++.+...|...-.-.
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~si--s~~i~~~-~-~~~~~~~~~~l~~~l~~~~~i~ 393 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETNV--TVSLDPS-E-NLVNTDVLAALSADLSQICRVK 393 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCEE--EEEEccc-c-ccchHHHHHHHHHHHhhcCcEE
Confidence 4557888864 468999999999999999999764 3333111 2445322 1 1101112333333333100000
Q ss_pred -cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090 334 -VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 383 (449)
Q Consensus 334 -~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v 383 (449)
...-..|.+++. .+||+++++-.+|.+.+|++ -.+|....++ |.|
T Consensus 394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~-----i~~gsSe~~Is~vV 443 (861)
T PRK08961 394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL-----ISQASNDLNLTFVI 443 (861)
T ss_pred EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE-----EECCCccccEEEEE
Confidence 122367888885 78999999999999977644 2344444444 444
No 271
>PRK14644 hypothetical protein; Provisional
Probab=62.03 E-value=73 Score=28.01 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=47.6
Q ss_pred HHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh--hccCCceEEEEEe--CCCc
Q 013090 278 CTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE--RRVSEGLKLELCT--TDRV 348 (449)
Q Consensus 278 ~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~--~r~~~~~~l~v~~--~Drp 348 (449)
..+..+|+.+.+......+ ...+-+| | +.. +-+..+.+.+.|.+.|. ...+..|.|||++ .|||
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~-I-dk~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp 74 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVI-L-NSR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD 74 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEE-E-CCC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC
Confidence 4678999999999999885 4555444 4 322 23577888888888886 3456789999996 4898
No 272
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=61.88 E-value=35 Score=29.89 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEe-ecCCceeeEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKSGKAVNTFYV 383 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~-T~g~~~~d~F~v 383 (449)
-+.|.+.-.||.|.|+++-.++++.++||....=+ ...++|.-+..+
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 48899999999999999999999999999877622 345666666666
No 273
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=61.73 E-value=2.1e+02 Score=32.80 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=66.2
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+.+.|+|.+. +.+|.++++..+|.++|++|.--...+.+. --.|.+... ..+.+.+.|.... .
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~~---------~~~~~~~~l~~~~---~ 381 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTSE---------VADSALKLLDDAA---L 381 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeHH---------HHHHHHHHHHhhc---C
Confidence 4556777765 778899999999999999987443333322 123444311 1223334443321 0
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEE
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A 156 (449)
...+. ...+...|.|+|. .++|+.+++..+|++.++++..-
T Consensus 382 -~~~i~--v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 -PGELK--LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred -CCcEE--EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 11222 2345678899985 58999999999999999999544
No 274
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.07 E-value=58 Score=22.98 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=26.5
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeEEEEEE
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEV 158 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i 158 (449)
.|++.|. +++|+++++..+|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4667655 8899999999999999999976644
No 275
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.93 E-value=14 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.4
Q ss_pred EEEEEE---eCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 126 TAIELT---GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 126 t~i~v~---~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
+.|+|. .+++||++++|..+|+++|+||..-- + .+ .--.|.|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 345552 57899999999999999999998764 3 22 334455553
No 276
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.91 E-value=64 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=28.0
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
.|.+.|. ++||+++++..+|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667764 789999999999999999998775544
No 277
>PRK08526 threonine dehydratase; Provisional
Probab=59.73 E-value=94 Score=32.41 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc----eeeEEEEEcCCCCCCCHHH
Q 013090 320 ERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK----AVNTFYVGGASGYPVDAKI 395 (449)
Q Consensus 320 ~~l~~~L~~~l~~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~----~~d~F~v~~~~g~p~~~~~ 395 (449)
..+.+.++..|- +..|...+.+.-+||||-|.++...+.+.+.||....-...... ...++..-... +.+.
T Consensus 310 ~~~~~i~~~~l~-~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~ 384 (403)
T PRK08526 310 QMLNIIIEKGLI-KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEH 384 (403)
T ss_pred HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHH
Confidence 355555666654 23457889999999999999999999999999998876443222 11222222222 3444
Q ss_pred HHHHHHHhccc
Q 013090 396 IDSIRQSIGQT 406 (449)
Q Consensus 396 ~~~lr~~l~~~ 406 (449)
+++|.+.|.+.
T Consensus 385 ~~~~~~~l~~~ 395 (403)
T PRK08526 385 QEEIRKILTEK 395 (403)
T ss_pred HHHHHHHHHHC
Confidence 56777766553
No 278
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=59.35 E-value=20 Score=24.97 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=25.8
Q ss_pred EEEEEeCC---CcChHHHHHHHHHhCCCcEEEEE
Q 013090 339 KLELCTTD---RVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 339 ~l~v~~~D---rpGLL~~it~~l~~~~i~I~~a~ 369 (449)
.+++.+.+ .||.++++..+|.+++++|....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 35666654 89999999999999999997765
No 279
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=59.30 E-value=26 Score=26.51 Aligned_cols=33 Identities=0% Similarity=0.178 Sum_probs=24.6
Q ss_pred HHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 013090 55 VQVLTDLNLIVTKAYISSDGCWFMDVFNVTDED 87 (449)
Q Consensus 55 ~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~ 87 (449)
......+|+.+..=.+.|.|||.+.+|.+..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 467788999999999999999999999997654
No 280
>PLN02550 threonine dehydratase
Probab=59.29 E-value=2.8e+02 Score=30.59 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=72.5
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccccCcc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN 201 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 201 (449)
.....+.|.-+||||-|.+++.+|... ||....-.-. .+.+.-.+-|.- .+++..+.|.+.|++.=-.-.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~l~~~g~~~~ 485 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-------HTEQELQALKKRMESAQLRTV 485 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-------CCHHHHHHHHHHHHHCCCCeE
Confidence 345678999999999999999999986 7766554432 233333333332 135677777777654110001
Q ss_pred ccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEEcCCCcchHHHHHHHHH
Q 013090 202 KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLT 281 (449)
Q Consensus 202 ~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DrpgLl~~i~~~L~ 281 (449)
++. ...++ . -|++-+ -+ ....+ ..--++.|.-|.|||-|...+..|.
T Consensus 486 ~l~--~~~~~--~----~~LR~v-~g-----------------~ra~~-------~~E~l~~v~fPErpGAl~~Fl~~lg 532 (591)
T PLN02550 486 NLT--SNDLV--K----DHLRYL-MG-----------------GRAIV-------KDELLYRFVFPERPGALMKFLDAFS 532 (591)
T ss_pred eCC--CChHH--h----hhhhhe-ec-----------------ccccc-------CceEEEEEEecCcCCHHHHHHHhhC
Confidence 110 01110 1 122211 00 01111 1124788889999999999999998
Q ss_pred h-CCceEEEEE
Q 013090 282 D-MQYVVFHAN 291 (449)
Q Consensus 282 ~-~gl~I~~A~ 291 (449)
. .++.-++=|
T Consensus 533 ~~~nITeF~YR 543 (591)
T PLN02550 533 PRWNISLFHYR 543 (591)
T ss_pred CCCceeeEEee
Confidence 7 477666655
No 281
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=59.21 E-value=63 Score=28.34 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=43.6
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEee
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTD 173 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~ 173 (449)
...-..+.+.-.||.|.|+++-.++++.+|||..-.-+- ..|+|--++.+..
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 445677888999999999999999999999999877665 6788877777764
No 282
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=58.96 E-value=49 Score=29.00 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=40.8
Q ss_pred HHHHHHhCCceEEEEEEEecCC-eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--CCc
Q 013090 276 TVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--DRV 348 (449)
Q Consensus 276 i~~~L~~~gl~I~~A~i~t~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~--r~~~~~~l~v~~~--Drp 348 (449)
+...+..+|+.+.+..+...++ ..+.+| | +.++. + +-+..+.+.+.+...|.. ..+..|.|||+++ |||
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~-i-d~~~g-v-~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~ 75 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVF-I-DKDGG-V-SLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRP 75 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEE-E-E-SS-----HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS-
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEE-E-EeCCC-C-CHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCc
Confidence 4567889999999999999965 455444 3 33444 4 335677777777777754 3467899999975 555
No 283
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=58.85 E-value=79 Score=36.82 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=55.2
Q ss_pred CCCEEEEecCC-CCCeEEEEE---EeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCChHHH
Q 013090 23 NPPRVVIDNEA-CKNATVIRV---DSANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVTDEDGNKITDEGIL 97 (449)
Q Consensus 23 ~~p~V~i~~~~-~~~~t~V~V---~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~ 97 (449)
..|.+.+.... ......+.+ -.+...|+|+.++.++..+||.+.++++.+ .+|..+-+|+|....+....+.++.
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~ 294 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIE 294 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHH
Confidence 33677665444 223333444 345667899999999999999999999988 4788888999987655532333445
Q ss_pred HHHHH
Q 013090 98 DYIRK 102 (449)
Q Consensus 98 ~~I~~ 102 (449)
+.+++
T Consensus 295 ~~~~~ 299 (1002)
T PTZ00324 295 DRASL 299 (1002)
T ss_pred HHHHh
Confidence 55554
No 284
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=57.92 E-value=77 Score=38.79 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred CCCEEEEecCC--CCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--c-C--CEEEEEEEEEcCCCCCCCChH
Q 013090 23 NPPRVVIDNEA--CKNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--D-G--CWFMDVFNVTDEDGNKITDEG 95 (449)
Q Consensus 23 ~~p~V~i~~~~--~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~-~--g~~~d~F~V~~~~g~~~~~~~ 95 (449)
++..|.+.... .++.+.+.+|.+.++..|+++.-+|..+|+.|.+.+-+. . + ...+.-|.+..+.+...+...
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 44566655433 336789999999999999999999999999999887753 2 2 357788999888877655555
Q ss_pred HHHHHHHHhcc
Q 013090 96 ILDYIRKCLGP 106 (449)
Q Consensus 96 ~~~~I~~~L~~ 106 (449)
..+.+++++..
T Consensus 553 ~~~~~~~a~~~ 563 (1528)
T PF05088_consen 553 IRERFEEAFEA 563 (1528)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 285
>PRK08841 aspartate kinase; Validated
Probab=57.91 E-value=82 Score=32.74 Aligned_cols=95 Identities=13% Similarity=0.213 Sum_probs=59.5
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCC
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSE 336 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~ 336 (449)
++.+.|++.+ +.+.++...|.+.|+++..-. +..... .|+|.. ..++.++..+.+.+. ....
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i~-~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKIR-NSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccEE-EeCC
Confidence 3456677754 357889999999999988643 222211 255521 123333222211111 0123
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
-..+.+.+...||+.+++..+|.+.||+|....
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 467999999999999999999999999995443
No 286
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=57.82 E-value=4.5e+02 Score=32.50 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=112.5
Q ss_pred CCCEEEEecCCCCCeEEEEEEeC-CCc--chHHHHHHHHHhC-CceEEEEEEE-ecCCEEEEEEEEEcCCCCC--CCChH
Q 013090 23 NPPRVVIDNEACKNATVIRVDSA-NKH--GILLEVVQVLTDL-NLIVTKAYIS-SDGCWFMDVFNVTDEDGNK--ITDEG 95 (449)
Q Consensus 23 ~~p~V~i~~~~~~~~t~V~V~~~-Dr~--GLl~~i~~vL~~~-gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~--~~~~~ 95 (449)
...++.++.+..+.+.-+.||-| |+- .+-.+|-..|.+. +-...+-+.. +.+..+---|++..+.+.. ++.+.
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~ 406 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEA 406 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHH
Confidence 44688888888888888888755 333 3667788877664 4444444443 4666777778887766664 22222
Q ss_pred HHHHHHH-----------Hhccccc----------c----c-------CCcc-----------------eeec----cCC
Q 013090 96 ILDYIRK-----------CLGPEAC----------F----A-------SSMR-----------------SVGV----KQS 122 (449)
Q Consensus 96 ~~~~I~~-----------~L~~~~~----------~----~-------~~~~-----------------~V~~----~~~ 122 (449)
+.+.|.+ +|..... + . .|++ .+.+ ...
T Consensus 407 le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~ 486 (1528)
T PF05088_consen 407 LEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAG 486 (1528)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCC
Confidence 2222222 2222100 0 0 1110 1222 233
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc---CC--ceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NT--RAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~---~~--~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
+..+.+.+..+.++..|++|.-+|..+|+.|...+-+.. ++ ..+.-|++..+ .+..+...+..+.+++.+..+.
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999887662 23 24578888874 4544444566678888888777
Q ss_pred cCc
Q 013090 198 KGS 200 (449)
Q Consensus 198 ~~~ 200 (449)
.+.
T Consensus 566 ~g~ 568 (1528)
T PF05088_consen 566 NGR 568 (1528)
T ss_pred cCC
Confidence 665
No 287
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=57.78 E-value=70 Score=23.16 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHh
Q 013090 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSI 403 (449)
Q Consensus 345 ~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l 403 (449)
.++||+.++|-++|.++|+++.... | ++ ..=.|++... .. +..+..|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~---~~-~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDS---LL-PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehh---hh-hHHHHHHHHhh
Confidence 3789999999999999999999874 3 33 2236666432 11 23355666554
No 288
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=57.71 E-value=72 Score=33.30 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE-ccCCceEEEE-EEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THNTRAAALM-QVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~-T~~~~~~dvf-~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
......+.+.-|||||-|.+++..+...+.||...+-. ..+-....++ -+.- .++++.+.+.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-------NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 45677899999999999999999777777799966654 2332222222 2221 124666777776654
No 289
>PRK11898 prephenate dehydratase; Provisional
Probab=57.70 E-value=51 Score=32.64 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=39.6
Q ss_pred eEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 260 SVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 260 tvv~V~~-~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+-+.+.. .++||-|+++...|++.|+|+.+-.---.. ...-=.||| |.+|.. .+ ...+.+.+.|.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~-~~~~~al~~L~ 263 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DD-VLVAEALKELE 263 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CC-HHHHHHHHHHH
Confidence 4344444 457999999999999999999885443322 211123666 777763 23 24444444444
No 290
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=57.66 E-value=1.5e+02 Score=34.00 Aligned_cols=101 Identities=7% Similarity=0.001 Sum_probs=65.4
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH-hh
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI-ER 332 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l-~~ 332 (449)
++.+.|+|.+. +.||.+.++..+|.+.|++|..-...+... . -.|.+. . ...+.+.+.|++.. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~-s-is~~i~-~--------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ-L-LQLAYT-S--------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc-E-EEEEEe-H--------HHHHHHHHHHHhhcCCC
Confidence 45667888776 789999999999999999997754332222 1 123342 1 12233333343321 11
Q ss_pred c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEE
Q 013090 333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRA 368 (449)
Q Consensus 333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a 368 (449)
+ ...-..|.+++. .+||+.+++..+|.+.+|++...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 122466888884 68999999999999999998544
No 291
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.56 E-value=26 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=29.8
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEE
Q 013090 44 SANKHGILLEVVQVLTDLNLIVTKAYISS-DGCWFMDVFNVT 84 (449)
Q Consensus 44 ~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t-~~g~~~d~F~V~ 84 (449)
.+|.+|.++++.+.|.++|++|....... .+|..--.|.|.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 58889999999999999999997655532 233333346664
No 292
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=55.50 E-value=72 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 133 SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 133 ~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
.+++|+.++|..+|+++|+++..-. | +. .--.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4789999999999999999998773 3 22 335566654
No 293
>PRK08841 aspartate kinase; Validated
Probab=55.17 E-value=1.5e+02 Score=30.74 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceEEE
Q 013090 49 GILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAI 128 (449)
Q Consensus 49 GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t~i 128 (449)
+.++++.+.|.++|+++.-- ++....+ .|.|.. ...+.++..+... +. ...+...|
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i--~~~~~~~--~~~v~~---------~~~~~~~~~~~~~---------i~--~~~~~a~v 321 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNV--IEEADRA--QIVIKQ---------DACAKLKLVFDDK---------IR--NSESVSLL 321 (392)
T ss_pred chHHHHHHHHHHcCCCEEEE--EecCCcE--EEEECH---------HHHHHHHHhCccc---------EE--EeCCEEEE
Confidence 35789999999999888733 2222111 344521 1223333222111 11 12456789
Q ss_pred EEEeCCccchHHHHHHHHHhCCCeEEEEE
Q 013090 129 ELTGSDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 129 ~v~~~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.++|...||+.+++..+|.+.|+||..-.
T Consensus 322 svVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 322 TLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999995443
No 294
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.06 E-value=76 Score=24.56 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.2
Q ss_pred eCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 132 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 132 ~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.++.||++++|..+|+++|+||..-- + +. .--.|.|... ...+. .+.++.|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccc-hHHHHHHHHHHHh
Confidence 46789999999999999999998774 2 22 3344555541 11132 2456677776655
No 295
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=54.86 E-value=16 Score=27.18 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=25.0
Q ss_pred EEEEe-CCCcChHHHHHHHHHhCCCcEEEEE
Q 013090 340 LELCT-TDRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 340 l~v~~-~DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
+++.+ .|+||.++++.++|.++|++|....
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 44443 5899999999999999999998654
No 296
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=54.57 E-value=45 Score=35.31 Aligned_cols=52 Identities=4% Similarity=0.064 Sum_probs=35.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEE--EEEEEecCCC
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ--EYFIRHIDGS 311 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d--~F~V~~~~g~ 311 (449)
.+-|-+.-+|+||-|+++...|+..|+|+.+-.---......+ .||| +.+|.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~ 84 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELF 84 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcC
Confidence 3455566689999999999999999999988543333222212 4677 55665
No 297
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=54.37 E-value=76 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=25.5
Q ss_pred EEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090 127 AIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 127 ~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.|++.| ++.+|++.++...|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4679999999999999999997665
No 298
>PRK08639 threonine dehydratase; Validated
Probab=54.16 E-value=72 Score=33.40 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
+.....+.+.-|||||-|.+++..+...+-||...+-.. .+..... ..|.-. ..++++.+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~-v~v~iE-----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGP-VLVGIE-----LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceE-EEEEEE-----eCCHHHHHHHHHHHHH
Confidence 556778999999999999999997777666998775442 2211112 222211 1124677777776654
No 299
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.07 E-value=58 Score=25.64 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCC--HHHHHHHHHHhcc
Q 013090 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD--AKIIDSIRQSIGQ 405 (449)
Q Consensus 345 ~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~--~~~~~~lr~~l~~ 405 (449)
.+.||++++|-.+|.++|++|.... + ++ ..=.|.+...+..... ...+++|+++++.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999874 2 33 2235666433221000 1234567777665
No 300
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=52.48 E-value=42 Score=34.59 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 374 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g 374 (449)
.++|.|.||-||..++-..|...+|++...+|...|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 589999999999999999999999999999985443
No 301
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.65 E-value=89 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 013090 261 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDA 294 (449)
Q Consensus 261 vv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t 294 (449)
+|.+.|. +.++++.++...|++.|++|.-....+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999997755433
No 302
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=51.41 E-value=18 Score=38.97 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=32.8
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
.++|.|.||.|+..+|...|...++|+..-+|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47999999999999999999999999999999765
No 303
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.85 E-value=88 Score=22.22 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090 127 AIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 127 ~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.|++.| .+.||++.++..+|+++++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 356665 4679999999999999999997664
No 304
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=50.12 E-value=64 Score=24.89 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 345 ~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.-.||++++|-++|.++|+++...- + ++ ..=.|.+. .. .+..+.+.+|.++|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~--~~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALH--ME-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEe--hh-hcChHHHHHHHHHHHH
Confidence 3569999999999999999999875 2 33 22244443 22 2233245677777766
No 305
>PRK00907 hypothetical protein; Provisional
Probab=49.85 E-value=55 Score=26.80 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE----ecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS----SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~----t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
.-++|.+.+.+++...|..++..+.-......+. +.|.|.--++.|+- ++.+.++.|-++|...
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 5799999999999999999999998766666663 35666666666653 3455778888888764
No 306
>PLN02317 arogenate dehydratase
Probab=46.53 E-value=1.1e+02 Score=31.67 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=32.5
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
.|.|.+.-+|+||.|+++-.+|+.+|+|+..-+....
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 4777777799999999999999999999998887654
No 307
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.52 E-value=1.1e+02 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.6
Q ss_pred EEEEEeC---CccchHHHHHHHHHhCCCeE
Q 013090 127 AIELTGS---DRPGLLSEVSAVLTHLKCNV 153 (449)
Q Consensus 127 ~i~v~~~---DrpGLl~~I~~~l~~~g~~I 153 (449)
.|.++|. +.||+++++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 67999999999999987776
No 308
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=46.28 E-value=1.2e+02 Score=31.56 Aligned_cols=78 Identities=6% Similarity=0.022 Sum_probs=48.3
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccC
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVS 335 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t-~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~ 335 (449)
.....+.|.-+||||=|.+++..+...+.||.+-+-.. .+.....+++.....+ .+..+++.+.|++
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~-----~~h~~~i~~~L~~------- 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND-----KEDFAGLLERMAA------- 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC-----HHHHHHHHHHHHH-------
Confidence 44568999999999999999997777777999766542 2322223333333222 2455667666653
Q ss_pred CceEEEEEeCC
Q 013090 336 EGLKLELCTTD 346 (449)
Q Consensus 336 ~~~~l~v~~~D 346 (449)
.+|.++..+.|
T Consensus 391 ~Gy~~~~~~~~ 401 (409)
T TIGR02079 391 ADIHYEDINEN 401 (409)
T ss_pred CCCCeEECCCC
Confidence 25555544443
No 309
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=45.67 E-value=1.2e+02 Score=32.64 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=43.5
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
......+.|.-|||||-|.+++.+|.. .||...+-.-.+..-..+|..-. ..+++..+.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 345677899999999999999999997 47766554433333333443322 1135677777777654
No 310
>PRK14635 hypothetical protein; Provisional
Probab=45.51 E-value=1.7e+02 Score=26.48 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCe-eEEEEEEEec----CCCCCCCHHHHHHHHHHHHHHHhhc-cCCceEEE
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAEGPE-AYQEYFIRHI----DGSPVKSDAERERVIQCLKAAIERR-VSEGLKLE 341 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~-a~d~F~V~~~----~g~~l~~~~~~~~l~~~L~~~l~~r-~~~~~~l~ 341 (449)
+..-+-..+...+ ..|+.+.+..+...++. .+- .+| |. +| -+ +-+..+.+.+.+.+.|... ....|.||
T Consensus 4 ~~~~i~~l~~~~~-~~g~el~dve~~~~~~~~~lr-V~I-D~~~~~~~-gv-~lddC~~vSr~is~~LD~~d~~~~Y~LE 78 (162)
T PRK14635 4 SEEEISEILDRVL-ALPVKLYSLKVNQRPNHSLIE-VVL-DNLEHPYG-SV-SLLECEQVSRKLKEELERISPDLDFTLK 78 (162)
T ss_pred cHHHHHHHHHHHH-CCCCEEEEEEEEecCCCcEEE-EEE-ecCCCCCC-Cc-CHHHHHHHHHHHHHHhCCCCCCCCeEEE
Confidence 3444445555666 46999999999988654 544 344 32 22 13 2257788888888888732 23589999
Q ss_pred EEeC--CCcChHHHHHHHHHhCCCcE
Q 013090 342 LCTT--DRVGLLSNVTRIFRENSLTV 365 (449)
Q Consensus 342 v~~~--DrpGLL~~it~~l~~~~i~I 365 (449)
|+++ ||| |..--.+-+-.|-.+
T Consensus 79 VSSPGldRp--L~~~~~~~r~~G~~v 102 (162)
T PRK14635 79 VSSAGAERK--LRLPEDLDRFRGIPV 102 (162)
T ss_pred EcCCCCCCc--CCCHHHHHHhCCCEE
Confidence 9974 666 444444444445443
No 311
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=43.84 E-value=2e+02 Score=27.94 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-|..+..+++.+.+.|.. .+++-|.-|... +.+...+.+.|.+.+.. ....|++.+.|..
T Consensus 141 ~~~~~~~~~~~~~~~G~~---------------~i~l~DT~G~~~--P~~v~~lv~~l~~~~~~---~~i~l~~H~Hn~~ 200 (268)
T cd07940 141 DLDFLIEVVEAAIEAGAT---------------TINIPDTVGYLT--PEEFGELIKKLKENVPN---IKVPISVHCHNDL 200 (268)
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEECCCCCCCC--HHHHHHHHHHHHHhCCC---CceeEEEEecCCc
Confidence 578889999999888763 466767767643 34556666666544321 0367999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
|+-..-+-+-.+.|+.+..+.+.-.|+++
T Consensus 201 GlA~An~laAi~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 201 GLAVANSLAAVEAGARQVECTINGIGERA 229 (268)
T ss_pred chHHHHHHHHHHhCCCEEEEEeecccccc
Confidence 99766666666889999999999888764
No 312
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.22 E-value=1.3e+02 Score=22.17 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=30.4
Q ss_pred EEEEEcC--CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEE
Q 013090 261 VVTITSK--DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI 305 (449)
Q Consensus 261 vv~V~~~--DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V 305 (449)
+|.+.|. ..+|++.++..+|.+.|++|.-....+.+-... |+|
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v 47 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNIS--LIV 47 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEE--EEE
Confidence 4555554 468999999999999999998755545433332 555
No 313
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.69 E-value=1.3e+02 Score=21.73 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=26.6
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEE
Q 013090 261 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANID 293 (449)
Q Consensus 261 vv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~ 293 (449)
.|.+.|. ++|++..++...|++.|+++.-....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566664 78999999999999999999776543
No 314
>PRK14641 hypothetical protein; Provisional
Probab=41.63 E-value=2.4e+02 Score=25.81 Aligned_cols=76 Identities=8% Similarity=0.103 Sum_probs=49.7
Q ss_pred HhCCceEEEEEEEecC-CeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc--c----CCceEEEEEeC--CCcChH
Q 013090 281 TDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--V----SEGLKLELCTT--DRVGLL 351 (449)
Q Consensus 281 ~~~gl~I~~A~i~t~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r--~----~~~~~l~v~~~--DrpGLL 351 (449)
..+|+.+.+..+...| +..+-+| | |.+|. + +-+..+.+.+.+.+.|... . ...|.|||+++ ||| |
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~-I-D~~~g-v-~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRp--L 93 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVL-L-DADTG-I-RIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEP--I 93 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEE-E-eCCCC-C-CHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCc--C
Confidence 4899999999999885 4565444 4 54443 3 2357788888888888632 2 25899999975 666 3
Q ss_pred HHHHHHHHhCC
Q 013090 352 SNVTRIFRENS 362 (449)
Q Consensus 352 ~~it~~l~~~~ 362 (449)
-..-.+-+-.|
T Consensus 94 ~~~~~f~r~~G 104 (173)
T PRK14641 94 ILPRQYGRHVG 104 (173)
T ss_pred CCHHHHHHhCC
Confidence 33333333333
No 315
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=41.37 E-value=1.9e+02 Score=29.07 Aligned_cols=132 Identities=15% Similarity=0.240 Sum_probs=75.5
Q ss_pred cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCC--CCCCHHHHHHHH--HHHHHHHh----------
Q 013090 266 SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGS--PVKSDAERERVI--QCLKAAIE---------- 331 (449)
Q Consensus 266 ~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~--~l~~~~~~~~l~--~~L~~~l~---------- 331 (449)
-...|.-|.+..+.|..++.|+..-.++.+.+-|. +...+.-+. .+.++ +..++- .-|+.-++
T Consensus 189 VlSHPQal~Qce~~L~~l~~~~~r~a~~dTa~Aa~--~~s~~~~~d~~AIASe-~aA~ly~l~Il~~~IqDd~~NvTRFL 265 (377)
T KOG2797|consen 189 VLSHPQALGQCECSLTKLGPNAAREAVSDTAGAAE--QISASNTADTAAIASE-RAAELYGLNILEKNIQDDLGNVTRFL 265 (377)
T ss_pred eecCcHHHHHHHHHHHhcccceeeeeccchHHHHH--HHHhcccccHHHHHHH-HHHHHhcchhhhhhcccccCCeeEEE
Confidence 34679999999999999999888877766643332 122121111 12221 111111 11222222
Q ss_pred --hc------cCCceEEEEE--eCCCcChHHHHHHHHHhCCCcEEEEEEeecCC---ceee-------EEEEEcCCCCCC
Q 013090 332 --RR------VSEGLKLELC--TTDRVGLLSNVTRIFRENSLTVTRAEVATKSG---KAVN-------TFYVGGASGYPV 391 (449)
Q Consensus 332 --~r------~~~~~~l~v~--~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~---~~~d-------~F~v~~~~g~p~ 391 (449)
+| ..+.++.++. -.+.||.|.++-.+|+-+.||+.+.+....-. |+.| +||+ |-.-...
T Consensus 266 mLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~ylFyi-dfeasma 344 (377)
T KOG2797|consen 266 MLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFEYLFYI-DFEASMA 344 (377)
T ss_pred EEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCcccccccccccEEEEE-EEEeccC
Confidence 11 2233444444 46889999999999999999999998765321 2222 8888 3333344
Q ss_pred CHHHHHHHHH
Q 013090 392 DAKIIDSIRQ 401 (449)
Q Consensus 392 ~~~~~~~lr~ 401 (449)
++..+.++.+
T Consensus 345 e~~aq~al~~ 354 (377)
T KOG2797|consen 345 EPRAQNALGE 354 (377)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 316
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.86 E-value=1.2e+02 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.7
Q ss_pred EEEEEEe---CCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 126 TAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 126 t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
..|++.| .+.+|+++++..+|+++++++......+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3566754 4789999999999999999998765543
No 317
>PRK05925 aspartate kinase; Provisional
Probab=39.33 E-value=4.9e+02 Score=27.54 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=61.2
Q ss_pred eEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcc
Q 013090 37 ATVIRVDSA-NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMR 115 (449)
Q Consensus 37 ~t~V~V~~~-Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~ 115 (449)
.+.|++.+. ..+|.++++.++|.++|++|.-. .++.. --.|.|...+ .. +..++.|...|....
T Consensus 300 ~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i-~s~~~---sis~~i~~~~---~~-~~~~~~l~~~l~~~~------- 364 (440)
T PRK05925 300 QALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV-MAQNL---GVYFTIDDDD---IS-EEYPQHLTDALSAFG------- 364 (440)
T ss_pred EEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE-eccCC---EEEEEEechh---cc-HHHHHHHHHHhcCCc-------
Confidence 345555432 24677899999999999999633 12221 2245564321 11 123334444433211
Q ss_pred eeeccCCCceEEEEEEeCC--ccchHHHHHHHHHhCCCeEEE
Q 013090 116 SVGVKQSMDHTAIELTGSD--RPGLLSEVSAVLTHLKCNVVS 155 (449)
Q Consensus 116 ~V~~~~~~~~t~i~v~~~D--rpGLl~~I~~~l~~~g~~I~~ 155 (449)
.+. ...+...|.|+|.. .+|+.+++..+|++.|+||..
T Consensus 365 ~i~--~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 TVS--CEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred eEE--EECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 122 22356678888763 478999999999999999965
No 318
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=38.82 E-value=85 Score=23.51 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.9
Q ss_pred EEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeE-EEE
Q 013090 339 KLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 383 (449)
Q Consensus 339 ~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~-F~v 383 (449)
.+.+.+. -+||+++++.++|.+.|+++.... .|.....+ |.|
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~---~~~s~~~is~~V 48 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFVV 48 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE---ecCCeeEEEEEE
Confidence 4566653 369999999999999999997766 45554454 555
No 319
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.73 E-value=29 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred eCCccchHHHHHHHHHhCCCeEEEEE
Q 013090 132 GSDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 132 ~~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.++.||++++|..+|+++|+||.---
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 46889999999999999999998773
No 320
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.44 E-value=1.6e+02 Score=21.72 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=27.6
Q ss_pred EEEEEeC--CccchHHHHHHHHHhCCCeEEEEEEEcc
Q 013090 127 AIELTGS--DRPGLLSEVSAVLTHLKCNVVSAEVWTH 161 (449)
Q Consensus 127 ~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~i~T~ 161 (449)
.|.+.|. ..+|+++++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4566665 4689999999999999999987665543
No 321
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=38.02 E-value=1.4e+02 Score=20.88 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=25.1
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCceEEEEE
Q 013090 261 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHAN 291 (449)
Q Consensus 261 vv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~ 291 (449)
.|++.+. +++|+++++...|.+.++++....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~ 35 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMIS 35 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3556554 889999999999999999997644
No 322
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=37.96 E-value=99 Score=32.63 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=39.1
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 173 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~ 173 (449)
.+.|.+..+|+||-|+++-.+|+.+|+|+..-+.... +....=.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 5777777899999999999999999999998876653 333345788875
No 323
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=37.23 E-value=1.3e+02 Score=24.16 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=37.0
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013090 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 35 ~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~ 91 (449)
.+...+.+...| +......|..+|.+|...-.... +.. ..|++.||+|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~-~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP-GVG-RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC-CcE-EEEEEECCCCCEE
Confidence 455677888887 67777888999999986543333 222 4799999999864
No 324
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=37.23 E-value=1.8e+02 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEE
Q 013090 261 VVTITS---KDRPKLVFDTVCTLTDMQYVVFHANID 293 (449)
Q Consensus 261 vv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~ 293 (449)
.|++.+ .+.+|+++++...|++.++++......
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456643 478999999999999999999775544
No 325
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.36 E-value=3e+02 Score=26.56 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-|.-+.+++..+.++|.+ .+++-|.-|... +.+..++...+.+.+ + ..+++.+.|..
T Consensus 137 ~~~~~~~~~~~~~~~G~~---------------~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~--~~l~~H~Hn~~ 193 (259)
T cd07939 137 DPDFLIEFAEVAQEAGAD---------------RLRFADTVGILD--PFTTYELIRRLRAAT----D--LPLEFHAHNDL 193 (259)
T ss_pred CHHHHHHHHHHHHHCCCC---------------EEEeCCCCCCCC--HHHHHHHHHHHHHhc----C--CeEEEEecCCC
Confidence 478888888888888764 356667667543 335555555555333 2 56999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
|+=..-+-+--+.|+.+..+.+.-.|+++
T Consensus 194 Gla~An~laAi~aG~~~vd~s~~G~G~~a 222 (259)
T cd07939 194 GLATANTLAAVRAGATHVSVTVNGLGERA 222 (259)
T ss_pred ChHHHHHHHHHHhCCCEEEEecccccccc
Confidence 99776666667899999999999899764
No 326
>PRK08639 threonine dehydratase; Validated
Probab=36.24 E-value=2.2e+02 Score=29.77 Aligned_cols=66 Identities=6% Similarity=-0.021 Sum_probs=41.1
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 257 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 257 ~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
.....+.+.-+||||-|.+++..+...+.||.+-+-... +.....+++..+..+ .+..+++.+.|.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-----~~h~~~i~~~L~ 400 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-----AEDYDGLIERME 400 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-----HHHHHHHHHHHH
Confidence 345688999999999999999966676669988654322 211112333333222 235566666665
No 327
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=35.98 E-value=1.5e+02 Score=23.72 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=39.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNV 83 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V 83 (449)
+.+.+...++|+.|.++-++....|+.|.....++ +.|.+---|.|
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 57899999999999999999999999999888876 46666556667
No 328
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.26 E-value=2.6e+02 Score=26.99 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=64.6
Q ss_pred cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC
Q 013090 266 SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT 345 (449)
Q Consensus 266 ~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~ 345 (449)
+.-.|..+.++++.+.+.|. |.+++-|.-|... +.+..++.+.+.+.+. . ..+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~---------------d~i~l~DT~G~~~--P~~v~~lv~~l~~~~~----~-~~l~~H~H 193 (263)
T cd07943 136 HMASPEELAEQAKLMESYGA---------------DCVYVTDSAGAML--PDDVRERVRALREALD----P-TPVGFHGH 193 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCC---------------CEEEEcCCCCCcC--HHHHHHHHHHHHHhCC----C-ceEEEEec
Confidence 34456788888888888776 3456667667533 3466666666664442 1 47999999
Q ss_pred CCcChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 346 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 346 DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
|-.|+=..=+-+--+.|+.+..+.+.-.|+++
T Consensus 194 n~~GlA~AN~laAi~aGa~~vd~s~~GlG~~a 225 (263)
T cd07943 194 NNLGLAVANSLAAVEAGATRIDGSLAGLGAGA 225 (263)
T ss_pred CCcchHHHHHHHHHHhCCCEEEeecccccCCc
Confidence 99998665555556789999999999999884
No 329
>PRK14634 hypothetical protein; Provisional
Probab=34.85 E-value=3.4e+02 Score=24.34 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceE
Q 013090 48 HGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHT 126 (449)
Q Consensus 48 ~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t 126 (449)
.-+...+..++..+|+.+.+..+... ++|.+-+| |..++|..++ -+.++.+-+++...+.. .++-...+
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~-ID~~~g~~v~-lddC~~vSr~is~~LD~--------~d~i~~~Y 76 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQ-IRRSSGSDVS-LDDCAGFSGPMGEALEA--------SQLLTEAY 76 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEE-EECCCCCccc-HHHHHHHHHHHHHHhcc--------cccCCCCe
Confidence 34666778889999999999999875 56777554 4445564333 23566666666554321 01223567
Q ss_pred EEEEEeCC
Q 013090 127 AIELTGSD 134 (449)
Q Consensus 127 ~i~v~~~D 134 (449)
.++|.+|-
T Consensus 77 ~LEVSSPG 84 (155)
T PRK14634 77 VLEISSPG 84 (155)
T ss_pred EEEEeCCC
Confidence 78888553
No 330
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=34.38 E-value=86 Score=22.28 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=25.4
Q ss_pred EEEEEe---CCCcChHHHHHHHHHhCCCcEEEEE
Q 013090 339 KLELCT---TDRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 339 ~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
.+.+.+ .+.||+++++...|.+.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4679999999999999999997765
No 331
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.36 E-value=4.8e+02 Score=27.68 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
.+..+.++++.+.++|++ .+++.|.-|-. .+.+..++...|.+.+ +..|++.+.|-.
T Consensus 152 ~~~~~~~~a~~l~~~Gad---------------~I~i~Dt~G~l--~P~~v~~lv~alk~~~------~~pi~~H~Hnt~ 208 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGAD---------------SICIKDMAGIL--TPYVAYELVKRIKEAV------TVPLEVHTHATS 208 (448)
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEEcCCCCCC--CHHHHHHHHHHHHHhc------CCeEEEEecCCC
Confidence 346777888888877764 35666766653 2345666666666444 256999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
|+=-.=+-+-.+.|+.+.+..+..+|+++.+
T Consensus 209 GlA~AN~laAieaGad~vD~sv~glg~gaGN 239 (448)
T PRK12331 209 GIAEMTYLKAIEAGADIIDTAISPFAGGTSQ 239 (448)
T ss_pred CcHHHHHHHHHHcCCCEEEeeccccCCCcCC
Confidence 9976666666799999999999988877433
No 332
>PRK14645 hypothetical protein; Provisional
Probab=33.98 E-value=3.5e+02 Score=24.26 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCc
Q 013090 46 NKHGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMD 124 (449)
Q Consensus 46 Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~ 124 (449)
+..-+-..+..++..+|+.+.+..+... +++++-+| |..++|..++- +.++.+-+.+...+.. .++-..
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~-ID~~~~~~v~l-ddC~~vSr~is~~LD~--------~d~i~~ 76 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVR-IDRKDEQPVTV-EDLERASRALEAELDR--------LDPIEG 76 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEE-EECCCCCCcCH-HHHHHHHHHHHHHhcc--------cccCCC
Confidence 3445777788999999999999999865 46766554 43233433332 3455666665544320 012234
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCC
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLK 150 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g 150 (449)
.+.++|.+|.----|...-....-.|
T Consensus 77 ~Y~LEVSSPGldRpL~~~~df~r~~G 102 (154)
T PRK14645 77 EYRLEVESPGPKRPLFTARHFERFAG 102 (154)
T ss_pred ceEEEEeCCCCCCCCCCHHHHHHhCC
Confidence 56788875543333444444444444
No 333
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.78 E-value=2.5e+02 Score=27.35 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=62.0
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
.+..+.++++.+.+.|. |.+++.|.-|... +.+..++...|.+.+ +....+++.+.|..
T Consensus 136 ~~~~~~~~~~~~~~~g~---------------~~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~~~~~i~~H~Hn~~ 194 (266)
T cd07944 136 SDEELLELLELVNEIKP---------------DVFYIVDSFGSMY--PEDIKRIISLLRSNL----DKDIKLGFHAHNNL 194 (266)
T ss_pred CHHHHHHHHHHHHhCCC---------------CEEEEecCCCCCC--HHHHHHHHHHHHHhc----CCCceEEEEeCCCc
Confidence 35566666666666554 4467777777543 345566666665443 22467999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
|+-..-+-+--+.|+.+....+.-.|+++
T Consensus 195 Gla~AN~laA~~aGa~~vd~s~~G~G~~a 223 (266)
T cd07944 195 QLALANTLEAIELGVEIIDATVYGMGRGA 223 (266)
T ss_pred cHHHHHHHHHHHcCCCEEEEecccCCCCc
Confidence 99777777777899999999999999864
No 334
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.64 E-value=2.4e+02 Score=30.37 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=65.9
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH-h-----
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI-E----- 331 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l-~----- 331 (449)
....+.|.-|||||-|..++.+|... ||.+-+-.-.+.....+|+..... ..+.+++|.+.|++.= .
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dls 396 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDLT 396 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEECC
Confidence 45688999999999999999999974 666554433333233456554432 2356778887776431 0
Q ss_pred --------------hccCC---ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEE
Q 013090 332 --------------RRVSE---GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 370 (449)
Q Consensus 332 --------------~r~~~---~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i 370 (449)
-+.+. .-...+.=+-|||-|-++-.+|.. +-||+..+-
T Consensus 397 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Y 451 (499)
T TIGR01124 397 DDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHY 451 (499)
T ss_pred CCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEE
Confidence 01111 246777789999988866553322 236666664
No 335
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.63 E-value=3.2e+02 Score=30.16 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=68.6
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Q 013090 267 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTD 346 (449)
Q Consensus 267 ~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~D 346 (449)
.+-+..+.++++.+.++|++ .+++.|..|... +.+..+|.+.|.+.+ ...|++.+.|
T Consensus 151 ~~~~~~~~~~a~~l~~~Gad---------------~i~i~Dt~G~l~--P~~~~~lv~~lk~~~------~~pi~~H~Hn 207 (593)
T PRK14040 151 VHTLQTWVDLAKQLEDMGVD---------------SLCIKDMAGLLK--PYAAYELVSRIKKRV------DVPLHLHCHA 207 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCC---------------EEEECCCCCCcC--HHHHHHHHHHHHHhc------CCeEEEEECC
Confidence 34578888899988888774 456667777533 346677777776554 2469999999
Q ss_pred CcChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
-.|+-..=+-+-.+.|+.+....+.-+|+++.+
T Consensus 208 t~GlA~An~laAieAGa~~vD~ai~glG~~~Gn 240 (593)
T PRK14040 208 TTGLSTATLLKAIEAGIDGVDTAISSMSMTYGH 240 (593)
T ss_pred CCchHHHHHHHHHHcCCCEEEeccccccccccc
Confidence 999977777777899999999999999988543
No 336
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=33.26 E-value=2.5e+02 Score=27.48 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=65.4
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Q 013090 267 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTD 346 (449)
Q Consensus 267 ~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~D 346 (449)
..-|..+.++++.+.++|.+ .+++.|.-|... +.+...+.+.|.+.+ + ...|++.+.|
T Consensus 147 ~~~~~~~~~~~~~~~~~g~~---------------~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~-~~~l~~H~Hn 204 (273)
T cd07941 147 KANPEYALATLKAAAEAGAD---------------WLVLCDTNGGTL--PHEIAEIVKEVRERL----P-GVPLGIHAHN 204 (273)
T ss_pred CCCHHHHHHHHHHHHhCCCC---------------EEEEecCCCCCC--HHHHHHHHHHHHHhC----C-CCeeEEEecC
Confidence 34588899999999988864 355667667533 345666666665444 2 2579999999
Q ss_pred CcChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
-.|+-..=+-+-.+.|+.+....+.-.|+++.+
T Consensus 205 d~Gla~An~laA~~aGa~~id~s~~GlGeraGn 237 (273)
T cd07941 205 DSGLAVANSLAAVEAGATQVQGTINGYGERCGN 237 (273)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 999865555555578999999999999988644
No 337
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.73 E-value=2.4e+02 Score=27.61 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-|..+.++++.+.++|. |.+++.|.-|... +.+...+...|.+.+ + ..|++.+.|-.
T Consensus 147 ~~~~~~~~~~~~~~~Ga---------------~~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~--~~l~~H~Hnd~ 203 (275)
T cd07937 147 TLEYYVKLAKELEDMGA---------------DSICIKDMAGLLT--PYAAYELVKALKKEV----G--LPIHLHTHDTS 203 (275)
T ss_pred CHHHHHHHHHHHHHcCC---------------CEEEEcCCCCCCC--HHHHHHHHHHHHHhC----C--CeEEEEecCCC
Confidence 34566666666666654 4466667777643 345566666665443 2 57999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
|+-..=+-+-.+.|+.+....+.-.|+++.+
T Consensus 204 GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN 234 (275)
T cd07937 204 GLAVATYLAAAEAGVDIVDTAISPLSGGTSQ 234 (275)
T ss_pred ChHHHHHHHHHHhCCCEEEEecccccCCcCC
Confidence 9977666666689999999999999998543
No 338
>PRK02001 hypothetical protein; Validated
Probab=32.57 E-value=3.1e+02 Score=24.53 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=49.3
Q ss_pred HHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC--CCcChHHHH
Q 013090 277 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT--DRVGLLSNV 354 (449)
Q Consensus 277 ~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~--DrpGLL~~i 354 (449)
...+..+|+.+.+..+...+ .+- .+| |.+|. + +-+..+.+.+.|.+.|... +..|.|||+++ ||| |..-
T Consensus 12 e~~~~~~g~eLvdv~~~~~~--~lr-V~I-D~~~G-v-~lddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRp--L~~~ 82 (152)
T PRK02001 12 EELLEGPELFLVDLTISPDN--KIV-VEI-DGDEG-V-WIEDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSP--LKVP 82 (152)
T ss_pred HhhhhhcCcEEEEEEEEcCC--EEE-EEE-ECCCC-C-CHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCc--CCCH
Confidence 34577899999999877543 233 345 44332 3 2357788888888888732 47899999975 666 4333
Q ss_pred HHHHHhCC
Q 013090 355 TRIFRENS 362 (449)
Q Consensus 355 t~~l~~~~ 362 (449)
-.+-+-.|
T Consensus 83 ~~f~r~~G 90 (152)
T PRK02001 83 RQYKKNIG 90 (152)
T ss_pred HHHHHhCC
Confidence 34444444
No 339
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=31.77 E-value=75 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.0
Q ss_pred EEEEEe-CCccchHHHHHHHHHhCCCeEEEE
Q 013090 127 AIELTG-SDRPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 127 ~i~v~~-~DrpGLl~~I~~~l~~~g~~I~~A 156 (449)
.|+|.+ ++.||.+++|.+.|+++|+||-.-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 455553 456999999999999999999888
No 340
>PRK02047 hypothetical protein; Provisional
Probab=31.60 E-value=2e+02 Score=23.31 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe----cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS----DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
+.++|.+++.+++...+..++..+...+..+.+.+ .|.|.--.+.|+- .+++.++.|-++|...
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v------~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRA------TSREQLDNIYRALTGH 84 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 68999999999999999999999977776766643 4556554555542 4455778888888764
No 341
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=31.34 E-value=1.1e+02 Score=31.64 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.9
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
.|+|.|.||-||..++-..|...++|+...+|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 489999999999999999999999999999984
No 342
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.83 E-value=1.1e+02 Score=24.50 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=34.8
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~ 91 (449)
+...+.+...|+..+ ..+...+.++|.+|...-.....|+ .|++.||+|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777775444 5566667789999875433233343 578999999864
No 343
>PRK00907 hypothetical protein; Provisional
Probab=29.70 E-value=1.5e+02 Score=24.17 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=43.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEE----EecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI----DAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i----~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
+-+.|.|.++++|...|..++..+.-.....++ ++.|.|..=++.|+ ..+.+.++.|-+.|.
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~------ats~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR------AESREQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHh
Confidence 579999999999999999999988766555555 44466655455553 223346666666665
No 344
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=28.41 E-value=4.4e+02 Score=29.10 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCC
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDR 347 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Dr 347 (449)
.-+..+.++++.+.++|++ .+++.|.-|-. .+.+..++...|.+.+ +..|++.+.|-
T Consensus 151 ~t~e~~~~~ak~l~~~Gad---------------~I~IkDtaG~l--~P~~v~~lv~alk~~~------~ipi~~H~Hnt 207 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCD---------------SIAIKDMAGLL--TPTVTVELYAGLKQAT------GLPVHLHSHST 207 (596)
T ss_pred CCHHHHHHHHHHHHHcCCC---------------EEEeCCcccCC--CHHHHHHHHHHHHhhc------CCEEEEEeCCC
Confidence 3466778888888888874 35566666643 3346666666666543 25799999999
Q ss_pred cChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 348 VGLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 348 pGLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
.|+=..-+-+-.+.|+.+....+.-.|+++
T Consensus 208 ~Gla~an~laAieaGad~iD~ai~glGg~t 237 (596)
T PRK14042 208 SGLASICHYEAVLAGCNHIDTAISSFSGGA 237 (596)
T ss_pred CCcHHHHHHHHHHhCCCEEEeccccccCCC
Confidence 999766666667999999999999998874
No 345
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.31 E-value=2.2e+02 Score=22.45 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHH----HHHHHHHhcccee
Q 013090 346 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKI----IDSIRQSIGQTIL 408 (449)
Q Consensus 346 DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~----~~~lr~~l~~~~~ 408 (449)
...|.+.++-.+|.++|+++.+.- .+.|.|.+.-. ...++.+. ++.|++++...-+
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~-~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIR-DNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEE-ccccchhhHHHHHHHHHHhcCCCEE
Confidence 347999999999999999999876 34666655433 22344422 3445555444333
No 346
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=28.27 E-value=6.6e+02 Score=27.13 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=69.3
Q ss_pred EcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEe
Q 013090 265 TSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT 344 (449)
Q Consensus 265 ~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~ 344 (449)
...+-+..+.++++.+.++|++ .+.+.|.-|-. .+.+..+|...|.+.+ +....|++.+
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad---------------~I~IkDtaGll--~P~~~~~LV~~Lk~~~----~~~ipI~~H~ 207 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGAD---------------SICIKDMAALL--KPQPAYDIVKGIKEAC----GEDTRINLHC 207 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC---------------EEEeCCCccCC--CHHHHHHHHHHHHHhC----CCCCeEEEEe
Confidence 3466888999999999999884 34555655643 3446666666666444 2246799999
Q ss_pred CCCcChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 345 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 345 ~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
.|-.|+-..=+-+-.+.|+.+....|.-.|+++
T Consensus 208 Hnt~GlA~An~laAieAGad~vDtai~Glg~~a 240 (499)
T PRK12330 208 HSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGP 240 (499)
T ss_pred CCCCCcHHHHHHHHHHcCCCEEEeecccccccc
Confidence 999999877777778999999999999888764
No 347
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.85 E-value=2.2e+02 Score=20.02 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=24.2
Q ss_pred EEEEc---CCCcchHHHHHHHHHhCCceEEEEE
Q 013090 262 VTITS---KDRPKLVFDTVCTLTDMQYVVFHAN 291 (449)
Q Consensus 262 v~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~ 291 (449)
|.|.+ .+.||++.++...|.+.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4679999999999999999996653
No 348
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=27.68 E-value=2e+02 Score=22.91 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=35.9
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCC
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPV 313 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l 313 (449)
....+.+...| +..+.+.|..+|+++........++ . ..|++.|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~-~-~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGV-G-RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCc-E-EEEEEECCCCCEE
Confidence 44567777888 6777788999999988765433322 2 3589999999865
No 349
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.46 E-value=4.5e+02 Score=25.83 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=77.1
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Q 013090 267 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTD 346 (449)
Q Consensus 267 ~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~D 346 (449)
+.-|..+.++++.+.++|++. +++-|--|... +.+..++...|.+. .| ...+++.+.|
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~---------------i~l~DT~G~~~--P~~v~~l~~~l~~~----~~-~~~i~~H~Hn 200 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKR---------------IMLPDTLGILS--PFETYTYISDMVKR----YP-NLHFDFHAHN 200 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCE---------------EEecCCCCCCC--HHHHHHHHHHHHhh----CC-CCeEEEEeCC
Confidence 346889999999999998752 45556656533 33555555555432 22 3579999999
Q ss_pred CcChHHHHHHHHHhCCCcEEEEEEeecCCceee------EEEEEcCCCC--CCCHHHHHHHHHHhcc
Q 013090 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN------TFYVGGASGY--PVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d------~F~v~~~~g~--p~~~~~~~~lr~~l~~ 405 (449)
-.|+=-.=+-+--+.|+....+.+.-.|+++.+ ++.+....|. .++...+..+.+.+.+
T Consensus 201 d~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~ 267 (280)
T cd07945 201 DYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVET 267 (280)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHH
Confidence 999977777777889999999999999987544 3333222243 3555555555554444
No 350
>PRK14636 hypothetical protein; Provisional
Probab=27.21 E-value=4.5e+02 Score=24.09 Aligned_cols=77 Identities=8% Similarity=0.011 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceE
Q 013090 48 HGILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHT 126 (449)
Q Consensus 48 ~GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t 126 (449)
+-+...+..++..+|+.+.+..+... ++|++=+|. ..++|..++ =+.++.+-+.|...+.. .++-+..+
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~I-D~~~~ggV~-lDDC~~vSr~Is~~LD~--------~d~i~~~Y 74 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMA-ERPDTRQLV-IEDCAALSRRLSDVFDE--------LDPIEDAY 74 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEE-ECCCCCCcC-HHHHHHHHHHHHHHhcc--------CcCCCCCe
Confidence 44666788899999999999998875 467665554 333322232 23566666666554321 01223456
Q ss_pred EEEEEeCC
Q 013090 127 AIELTGSD 134 (449)
Q Consensus 127 ~i~v~~~D 134 (449)
.++|.+|-
T Consensus 75 ~LEVSSPG 82 (176)
T PRK14636 75 RLEVSSPG 82 (176)
T ss_pred EEEEeCCC
Confidence 78888554
No 351
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=26.53 E-value=5.8e+02 Score=25.19 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=62.7
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
.|..+.++++.+.++|.+ .+++-|.-|... +.+..++.+.|.+.+. ...|++.+.|..
T Consensus 153 ~~~~~~~~~~~~~~~G~d---------------~i~l~DT~G~~~--P~~v~~lv~~l~~~~~-----~~~i~~H~Hn~~ 210 (287)
T PRK05692 153 PPEAVADVAERLFALGCY---------------EISLGDTIGVGT--PGQVRAVLEAVLAEFP-----AERLAGHFHDTY 210 (287)
T ss_pred CHHHHHHHHHHHHHcCCc---------------EEEeccccCccC--HHHHHHHHHHHHHhCC-----CCeEEEEecCCC
Confidence 488999999999999874 355656656533 3455666666654432 246899999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCC
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSG 375 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~ 375 (449)
|+--.=+-+-.+.|+...+..+.-+|+
T Consensus 211 Gla~AN~laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 211 GQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred CcHHHHHHHHHHhCCCEEEEEccccCC
Confidence 986655566668999999999998888
No 352
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.49 E-value=3.3e+02 Score=27.58 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
.|.-+.++++.+.+.|. |.+|+.|.-|... +.+..++...|.+.+. ....+.+.+.|-.
T Consensus 141 ~~e~l~~~a~~~~~~Ga---------------~~i~i~DT~G~~~--P~~v~~~v~~l~~~l~----~~i~ig~H~Hnnl 199 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGA---------------DCVYIVDSAGAML--PDDVRDRVRALKAVLK----PETQVGFHAHHNL 199 (333)
T ss_pred CHHHHHHHHHHHHhcCC---------------CEEEEccCCCCCC--HHHHHHHHHHHHHhCC----CCceEEEEeCCCC
Confidence 45667777777776665 4577888888654 3456666666665543 2467999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
||=..=+-+..+.|.....+.+.-.|+++-+
T Consensus 200 Gla~ANslaAi~aGa~~iD~Sl~G~G~~aGN 230 (333)
T TIGR03217 200 SLAVANSIAAIEAGATRIDASLRGLGAGAGN 230 (333)
T ss_pred chHHHHHHHHHHhCCCEEEeecccccccccC
Confidence 9987777777899999999998888886544
No 353
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=26.31 E-value=4.9e+02 Score=23.52 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc
Q 013090 255 YDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV 334 (449)
Q Consensus 255 ~~~~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~ 334 (449)
.+.....+.|.-+|+||-|-.+.+=|...|.||.. |.+..+++...
T Consensus 1 m~~mritldIEL~D~PGQLl~vLqPls~~g~NiIt---------------IiH~r~kk~g~------------------- 46 (170)
T COG2061 1 MFQMRITLDIELKDKPGQLLKVLQPLSKTGANIIT---------------IIHSRDKKYGP------------------- 46 (170)
T ss_pred CcceEEEEEEEecCCCcchhhhhcchhhcCccEEE---------------EEeecCcccCC-------------------
Q ss_pred CCceEEEEEe-CCCcChHHHHHHHHHhCCCcEEEE
Q 013090 335 SEGLKLELCT-TDRVGLLSNVTRIFRENSLTVTRA 368 (449)
Q Consensus 335 ~~~~~l~v~~-~DrpGLL~~it~~l~~~~i~I~~a 368 (449)
...+++.- .||.-...++.+.+.+.|++|.+.
T Consensus 47 --r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~ 79 (170)
T COG2061 47 --RVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRF 79 (170)
T ss_pred --ceeEEEEEEecccHHHHHHHHHHHhCCcEEEEe
No 354
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.19 E-value=5.3e+02 Score=24.38 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Q 013090 267 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTD 346 (449)
Q Consensus 267 ~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~D 346 (449)
..-+..+.++++.+.++|.+ .+++.|..|.. .+....++...+.+ +.+. ..+++.+.|
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~---------------~i~l~Dt~G~~--~P~~v~~li~~l~~----~~~~-~~~~~H~Hn 199 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGAD---------------EISLKDTVGLA--TPEEVAELVKALRE----ALPD-VPLGLHTHN 199 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCC---------------EEEechhcCCc--CHHHHHHHHHHHHH----hCCC-CeEEEEeCC
Confidence 37888899999999998864 34454555642 23345555444443 2332 789999999
Q ss_pred CcChHHHHHHHHHhCCCcEEEEEEeecCCce
Q 013090 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGKA 377 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~ 377 (449)
..||-..=+-+-.+.|+.+..+.+.-.|+++
T Consensus 200 ~~gla~an~laA~~aG~~~id~s~~G~G~~~ 230 (265)
T cd03174 200 TLGLAVANSLAALEAGADRVDGSVNGLGERA 230 (265)
T ss_pred CCChHHHHHHHHHHcCCCEEEeccccccccc
Confidence 9999877777777899999999988888764
No 355
>PRK00341 hypothetical protein; Provisional
Probab=24.92 E-value=2.9e+02 Score=22.41 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe----cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS----DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
+.+.|.+.+.+++...|..++..+. .+....+.+ .|.|.--.+.|.- .+++.++.|-++|...
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~------~s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA------TDEDQLQDINSALRAT 84 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 6899999999999999999999887 776666643 4455555555542 3455678888888764
No 356
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=24.54 E-value=3.4e+02 Score=21.03 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred EEEEEeCC---ccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 127 AIELTGSD---RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 127 ~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
.|+|..+| .+|.-++|..+|++++++|..=. | +-. .-+.|+..+ .....++..+|++...
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~--~-nAN-tit~yl~~~--------~k~~~r~~~~Le~~~p 65 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKD--T-NAN-TITHYLAGS--------LKTIKRLTEDLENRFP 65 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEe--c-CCC-eEEEEEEcC--------HHHHHHHHHHHHHhCc
Confidence 45666665 58888999999999999998762 2 211 234555541 2455666666655443
No 357
>PRK14642 hypothetical protein; Provisional
Probab=24.45 E-value=5.9e+02 Score=23.87 Aligned_cols=85 Identities=22% Similarity=0.175 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecC------------CCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID------------GSPVKSDAERERVIQCLKAAIERRVSEGLK 339 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~------------g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~ 339 (449)
|-..+..++..+|+.+.+..+.. ++ .+-+| | |.. +.-+ +.+..+.+.+.|...|.......+.
T Consensus 3 l~~liepvv~~lG~eLvdve~~~-~~-~LrV~-I-D~~~~~~~~~~~~~~~~gV-tidDC~~vSR~Is~~LDve~~~y~~ 77 (197)
T PRK14642 3 LQQIVEQTVTGLGYDLVEIERSA-GG-LLRVT-I-DLPWVPPTEGAPVGPEQFV-TVEDCEKVTRQLQFALEVDGVDYKR 77 (197)
T ss_pred HHHHHHHHHHHcCCEEEEEEEec-CC-EEEEE-E-ecCccccccccccccCCCc-cHHHHHHHHHHHHHHhcccCccccE
Confidence 34556778899999999999764 33 34333 4 321 1123 2246778888888888743333347
Q ss_pred EEEEeC--CCcChHHHHHHHHHhCCC
Q 013090 340 LELCTT--DRVGLLSNVTRIFRENSL 363 (449)
Q Consensus 340 l~v~~~--DrpGLL~~it~~l~~~~i 363 (449)
|||+++ ||| |.....+-+-.|=
T Consensus 78 LEVSSPGldRP--Lk~~~df~rfiG~ 101 (197)
T PRK14642 78 LEVSSPGIDRP--LRHEQDFERFAGE 101 (197)
T ss_pred EEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 999974 666 4444444444443
No 358
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=24.35 E-value=1.2e+02 Score=22.71 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEEEeC-CCcChHHHHHHHHHhCCCcEEEE
Q 013090 339 KLELCTT-DRVGLLSNVTRIFRENSLTVTRA 368 (449)
Q Consensus 339 ~l~v~~~-DrpGLL~~it~~l~~~~i~I~~a 368 (449)
.+.|.+. +.||.+++|-..|.++|++|.-.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 4555553 56999999999999999999988
No 359
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=24.14 E-value=3e+02 Score=20.40 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=25.3
Q ss_pred eEEEEEcC--CCcchHHHHHHHHHhCCceEEEEE
Q 013090 260 SVVTITSK--DRPKLVFDTVCTLTDMQYVVFHAN 291 (449)
Q Consensus 260 tvv~V~~~--DrpgLl~~i~~~L~~~gl~I~~A~ 291 (449)
..|.+.|. .+||+..++..+|.+.|+++....
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~ 36 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH 36 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE
Confidence 35666654 368999999999999999997644
No 360
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.47 E-value=3.3e+02 Score=20.64 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=41.0
Q ss_pred EEEEEcCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 013090 261 VVTITSKDR-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 327 (449)
Q Consensus 261 vv~V~~~Dr-pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 327 (449)
.+...+... ..++.++++.+ +..+||.+|.|...++..+..|++.- .|. +...++..+.|.
T Consensus 6 ~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l-~g~----~~~~~~a~~~L~ 67 (76)
T PF09383_consen 6 RLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILEL-PGD----DEEIEKAIAYLR 67 (76)
T ss_dssp EEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEE-ES-----HHHHHHHHHHHH
T ss_pred EEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEE-ECC----HHHHHHHHHHHH
Confidence 344445443 56888888877 78999999999999999889888844 343 223444444444
No 361
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=23.46 E-value=1.4e+02 Score=23.24 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=34.7
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~ 91 (449)
+...+.+..+| +..+.+.|..+|+.+....-. .+....|++.|++|..+
T Consensus 64 ~~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 64 RDDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred ccceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 33456777777 778899999999998754321 23334688999999864
No 362
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.39 E-value=69 Score=24.71 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 133 SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 133 ~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.-.||++++|..+|+++|+||..-- + ++ .--.|.+.. ..+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~----~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM----ENAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh----hhcCh-HHHHHHHHHHHH
Confidence 3469999999999999999998764 2 22 233444443 12222 356666666655
No 363
>PRK14646 hypothetical protein; Provisional
Probab=22.95 E-value=5.5e+02 Score=22.95 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceEE
Q 013090 49 GILLEVVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTA 127 (449)
Q Consensus 49 GLl~~i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t~ 127 (449)
-+...+..++..+|+.+.+..+... ++|.+=+|. ..++|..++ =+.++.+-+.+...+.. .++-.+.+.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I-Dk~~g~gVt-ldDC~~vSr~is~~LD~--------~D~i~~~Y~ 77 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIII-KKTNGDDIS-LDDCALFNTPASEEIEN--------SNLLNCSYV 77 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE-ECCCCCCcc-HHHHHHHHHHHHHHhCc--------CCCCCCCeE
Confidence 4566788899999999999999875 567775554 333343333 23566666666654321 023345677
Q ss_pred EEEEeCCccchHHHHHHHHHhCC
Q 013090 128 IELTGSDRPGLLSEVSAVLTHLK 150 (449)
Q Consensus 128 i~v~~~DrpGLl~~I~~~l~~~g 150 (449)
++|.+|.----|......-.-.|
T Consensus 78 LEVSSPGldRpL~~~~df~r~~G 100 (155)
T PRK14646 78 LEISSQGVSDELTSERDFKTFKG 100 (155)
T ss_pred EEEcCCCCCCcCCCHHHHHHhCC
Confidence 88886543333444433333333
No 364
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=22.48 E-value=3.5e+02 Score=25.99 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccc
Q 013090 33 ACKNATVIRVDSANKHGILLEVVQVLTDLNLIVTK----AYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEA 108 (449)
Q Consensus 33 ~~~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~----A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~ 108 (449)
+.+-..+|.+.+.|+......|-.+|..+|.++.. .+++..-|+ +.|.. ...+.++.++...++ +..
T Consensus 88 P~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~----i~~~~---~~~~~d~~~e~aIe~--Gae 158 (234)
T PF01709_consen 88 PGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGV----IEVSK---KDLDEDELMEDAIEA--GAE 158 (234)
T ss_dssp TTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEE----EEEEH---CCS-HHHHHHHHHHH--TES
T ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEE----EEEEe---CCCChHHHHHHHHhC--CCc
Confidence 34455688999999999999999999999988765 333333333 33432 111222222222221 111
Q ss_pred cccCCcceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE
Q 013090 109 CFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 159 (449)
Q Consensus 109 ~~~~~~~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~ 159 (449)
++....+. ++|.| .|.-|..+..+|...|+.|..+.+.
T Consensus 159 ---------Dve~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 159 ---------DVEEDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp ---------EEEECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred ---------EeeecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 11112222 55555 4788999999999999999988874
No 365
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=22.39 E-value=6e+02 Score=29.91 Aligned_cols=60 Identities=12% Similarity=-0.036 Sum_probs=45.1
Q ss_pred EeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090 131 TGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKE 191 (449)
Q Consensus 131 ~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~ 191 (449)
..+...|+|+.|+.++..+|+.+.++.+-+. +|-.+-.|||+.. .+....+.+.+.++++
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~-~~~~~~~~~~~~~~~~ 299 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL-TADDNPDLSIEDRASL 299 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC-CCCCcccccHHHHHHh
Confidence 5677899999999999999999999999995 6667899999973 3432222233444444
No 366
>PRK14639 hypothetical protein; Provisional
Probab=22.34 E-value=5.4e+02 Score=22.60 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceEEEEEEe
Q 013090 54 VVQVLTDLNLIVTKAYISSD-GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTG 132 (449)
Q Consensus 54 i~~vL~~~gl~I~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t~i~v~~ 132 (449)
+..++..+|+.+.+...... +.|.+=+| +..+.| ++ -+.++.+-+.+...+.. .++-...+.++|.+
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~g--v~-iddC~~vSr~is~~LD~--------~d~i~~~Y~LEVSS 70 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVY-ITKEGG--VN-LDDCERLSELLSPIFDV--------EPPVSGEYFLEVSS 70 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEE-EeCCCC--CC-HHHHHHHHHHHHHHhcc--------ccccCCCeEEEEeC
Confidence 44678899999999999875 45766554 433334 32 23556666666544320 01223456677775
Q ss_pred CCccchHHHHHHHHHhCCCe
Q 013090 133 SDRPGLLSEVSAVLTHLKCN 152 (449)
Q Consensus 133 ~DrpGLl~~I~~~l~~~g~~ 152 (449)
|.----|...-..-.-.|-.
T Consensus 71 PGl~RpL~~~~~f~r~~G~~ 90 (140)
T PRK14639 71 PGLERKLSKIEHFAKSIGEL 90 (140)
T ss_pred CCCCCcCCCHHHHHHhCCCE
Confidence 54333344443333444433
No 367
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.63 E-value=3.9e+02 Score=27.12 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=66.2
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCC
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDR 347 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Dr 347 (449)
-.|.-+.++++.+.+.|. |.+|+.|..|... +....++...|.+.+. ....+.+.+.|.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga---------------~~i~i~DT~G~~~--P~~v~~~v~~l~~~l~----~~i~ig~H~Hnn 199 (337)
T PRK08195 141 APPEKLAEQAKLMESYGA---------------QCVYVVDSAGALL--PEDVRDRVRALRAALK----PDTQVGFHGHNN 199 (337)
T ss_pred CCHHHHHHHHHHHHhCCC---------------CEEEeCCCCCCCC--HHHHHHHHHHHHHhcC----CCCeEEEEeCCC
Confidence 356677777777777665 4477878888644 3455666666665442 346799999999
Q ss_pred cChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 348 VGLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 348 pGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
.|+=..=+-+..+.|+.+..+.+.-.|+++-+
T Consensus 200 lGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN 231 (337)
T PRK08195 200 LGLGVANSLAAVEAGATRIDGSLAGLGAGAGN 231 (337)
T ss_pred cchHHHHHHHHHHhCCCEEEecChhhcccccC
Confidence 99977777777789999999999888887544
No 368
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.59 E-value=9.5e+02 Score=25.71 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCcC
Q 013090 270 PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVG 349 (449)
Q Consensus 270 pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~DrpG 349 (449)
...+.++++.+.++|++ .+++.|.-|-.. +....++.+.|.+.. ...|++.+.|..|
T Consensus 162 ~~y~~~~a~~l~~~Gad---------------~I~IkDtaG~l~--P~~v~~Lv~alk~~~------~~pi~~H~Hnt~G 218 (468)
T PRK12581 162 LNYYLSLVKELVEMGAD---------------SICIKDMAGILT--PKAAKELVSGIKAMT------NLPLIVHTHATSG 218 (468)
T ss_pred HHHHHHHHHHHHHcCCC---------------EEEECCCCCCcC--HHHHHHHHHHHHhcc------CCeEEEEeCCCCc
Confidence 34577888888888774 356667666533 345566665554321 3679999999999
Q ss_pred hHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 350 LLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 350 LL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
+-..-+-+-.+.|+.+..+.+..+|+++.+
T Consensus 219 lA~An~laAieAGad~vD~ai~g~g~gagN 248 (468)
T PRK12581 219 ISQMTYLAAVEAGADRIDTALSPFSEGTSQ 248 (468)
T ss_pred cHHHHHHHHHHcCCCEEEeeccccCCCcCC
Confidence 977777777899999999999988877533
No 369
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=2.7e+02 Score=24.03 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 013090 268 DRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 329 (449)
Q Consensus 268 DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~ 329 (449)
|-+|+|+.+.+.|++.|+.|+- ++|+ +++.+ |+. +.++.-.++|+++
T Consensus 75 gltGilasV~~pLsd~gigIFa--vStydtDhiL----Vr~---------~dLekAv~~L~ea 122 (128)
T COG3603 75 GLTGILASVSQPLSDNGIGIFA--VSTYDTDHIL----VRE---------EDLEKAVKALEEA 122 (128)
T ss_pred CcchhhhhhhhhHhhCCccEEE--EEeccCceEE----Eeh---------hhHHHHHHHHHHc
No 370
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.98 E-value=6.7e+02 Score=27.61 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-+..+.++++.+.++|++ .+++.|..|... +.+..++.+.|.+.+ +..|++.+.|-.
T Consensus 147 ~~~~~~~~~~~~~~~Gad---------------~I~i~Dt~G~~~--P~~v~~lv~~lk~~~------~~pi~~H~Hnt~ 203 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVD---------------SICIKDMAGILT--PKAAYELVSALKKRF------GLPVHLHSHATT 203 (582)
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEECCCCCCcC--HHHHHHHHHHHHHhC------CCceEEEecCCC
Confidence 457777888888888774 355667667533 345666666666444 246899999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee------EEEEEcCCCC--CCCHHHHHHHHHHhcc
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN------TFYVGGASGY--PVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d------~F~v~~~~g~--p~~~~~~~~lr~~l~~ 405 (449)
|+--.=+-+-.+.|+.+....+.-+|+++.+ ++.+.. .|. .++.+.+..+.+.+.+
T Consensus 204 Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~-~g~~tgid~~~L~~l~~~~~~ 267 (582)
T TIGR01108 204 GMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG-TGYDTGLDIELLLEIAAYFRE 267 (582)
T ss_pred CcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh-cCCCcccCHHHHHHHHHHHHH
Confidence 9976666667799999999999999987543 222322 233 3566655555554444
No 371
>PRK14633 hypothetical protein; Provisional
Probab=20.72 E-value=6e+02 Score=22.55 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcceeeccCCCceEEEE
Q 013090 50 ILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIE 129 (449)
Q Consensus 50 Ll~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V~~~~~~~~t~i~ 129 (449)
+-..+..++..+|+.+.+..+...+++.+-+| |..++|-.+ +.++.+-+++...+.. .++-.+.+.++
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~l---ddC~~vSr~i~~~LD~--------~d~i~~~Y~LE 73 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSV---DDCQIVSKEISAVFDV--------EDPVSGKYILE 73 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCH---HHHHHHHHHHHHHhcc--------CcCCCCCeEEE
Confidence 44567788999999999999987667766554 433445322 3566666666554321 01223567788
Q ss_pred EEeCCccchHHHHHHHHHhCCCe
Q 013090 130 LTGSDRPGLLSEVSAVLTHLKCN 152 (449)
Q Consensus 130 v~~~DrpGLl~~I~~~l~~~g~~ 152 (449)
|.+|.----|......-.-.|-.
T Consensus 74 VSSPGldRpL~~~~~f~r~~G~~ 96 (150)
T PRK14633 74 VSSPGMNRQIFNIIQAQALVGFN 96 (150)
T ss_pred EeCCCCCCCCCCHHHHHHhCCCe
Confidence 88664333355555544444443
No 372
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=20.51 E-value=2.7e+02 Score=20.87 Aligned_cols=33 Identities=9% Similarity=-0.103 Sum_probs=23.6
Q ss_pred HHHHHhCCceEEEEEEEecCCeeEEEEEEEecC
Q 013090 277 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID 309 (449)
Q Consensus 277 ~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~ 309 (449)
...+...|+.++.=.|.|.+|+.+..|-|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456778999999999999999999999886543
No 373
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.43 E-value=6.6e+02 Score=26.87 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-+..+.++++.+.++|++ .+++.|.-|-. .+.+..++...|.+.+ +..|++.+.|-.
T Consensus 151 t~e~~~~~a~~l~~~Gad---------------~I~i~Dt~G~l--~P~~v~~Lv~~lk~~~------~vpI~~H~Hnt~ 207 (467)
T PRK14041 151 TLEYYLEFARELVDMGVD---------------SICIKDMAGLL--TPKRAYELVKALKKKF------GVPVEVHSHCTT 207 (467)
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEECCccCCc--CHHHHHHHHHHHHHhc------CCceEEEecCCC
Confidence 367777888888887764 45566666653 3446666666666444 256999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
|+=..=+-+-.+.|+.+....+..+|+++.+
T Consensus 208 GlA~AN~laAieaGad~vD~sv~~~g~gagN 238 (467)
T PRK14041 208 GLASLAYLAAVEAGADMFDTAISPFSMGTSQ 238 (467)
T ss_pred CcHHHHHHHHHHhCCCEEEeeccccCCCCCC
Confidence 9976666666799999999999988877543
No 374
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.37 E-value=2e+02 Score=23.07 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=34.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCC
Q 013090 39 VIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDG-CWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 39 ~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~-g~~~d~F~V~~~~g~~~ 91 (449)
-+.+...+. +..+...|.+.|+++...-....+ ......|++.||+|..+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 444555443 888999999999998765543322 22235688999999865
No 375
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.09 E-value=8.2e+02 Score=23.87 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
.+..+.++++.+.++|. |.+++-|.-|... +.+..++...|.+.+ | ...+++.+.|..
T Consensus 147 ~~~~~~~~~~~~~~~Ga---------------~~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~-~~~i~~H~Hnd~ 204 (274)
T cd07938 147 PPERVAEVAERLLDLGC---------------DEISLGDTIGVAT--PAQVRRLLEAVLERF----P-DEKLALHFHDTR 204 (274)
T ss_pred CHHHHHHHHHHHHHcCC---------------CEEEECCCCCccC--HHHHHHHHHHHHHHC----C-CCeEEEEECCCC
Confidence 57889999999998876 3456666666533 445666666665433 2 367999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCC
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSG 375 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~ 375 (449)
|+-..=+-+-.+.|+.+....+.-+|+
T Consensus 205 GlA~AN~laA~~aGa~~id~t~~GlGg 231 (274)
T cd07938 205 GQALANILAALEAGVRRFDSSVGGLGG 231 (274)
T ss_pred ChHHHHHHHHHHhCCCEEEEeccccCC
Confidence 997777777789999999998887773
Done!