Query 013090
Match_columns 449
No_of_seqs 359 out of 1911
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 99.8 5E-18 1.7E-22 157.5 13.0 141 258-404 4-160 (195)
2 2nyi_A Unknown protein; protei 99.7 3.7E-17 1.3E-21 151.6 15.4 153 37-197 5-163 (195)
3 1u8s_A Glycine cleavage system 99.7 4.7E-16 1.6E-20 143.6 16.8 138 259-404 6-163 (192)
4 1u8s_A Glycine cleavage system 99.6 2.8E-15 9.4E-20 138.4 14.6 151 37-197 6-166 (192)
5 3p96_A Phosphoserine phosphata 98.7 1.4E-07 4.8E-12 96.5 16.2 122 258-384 11-149 (415)
6 3p96_A Phosphoserine phosphata 98.7 1.4E-07 4.7E-12 96.6 15.1 132 36-173 11-150 (415)
7 2f06_A Conserved hypothetical 98.5 2.1E-06 7.3E-11 74.8 15.3 113 38-172 7-119 (144)
8 2f06_A Conserved hypothetical 98.3 1.6E-05 5.5E-10 69.1 13.9 112 260-383 7-118 (144)
9 1zpv_A ACT domain protein; str 98.1 8E-06 2.7E-10 65.1 8.1 65 124-195 4-68 (91)
10 2ko1_A CTR148A, GTP pyrophosph 97.9 6.1E-05 2.1E-09 59.2 9.6 64 125-195 5-68 (88)
11 1zpv_A ACT domain protein; str 97.9 8.5E-05 2.9E-09 59.0 10.3 50 37-86 5-54 (91)
12 3l76_A Aspartokinase; alloster 97.7 0.018 6.3E-07 61.5 28.3 292 39-404 272-589 (600)
13 2ko1_A CTR148A, GTP pyrophosph 97.7 0.00014 4.8E-09 57.1 8.9 64 337-405 5-68 (88)
14 2re1_A Aspartokinase, alpha an 97.5 0.0015 5.2E-08 58.1 13.1 109 36-156 24-137 (167)
15 3obi_A Formyltetrahydrofolate 97.3 0.0062 2.1E-07 59.1 15.6 103 259-366 6-118 (288)
16 3o1l_A Formyltetrahydrofolate 97.3 0.0045 1.5E-07 60.5 14.6 50 36-85 21-72 (302)
17 3obi_A Formyltetrahydrofolate 97.3 0.009 3.1E-07 57.9 16.6 117 37-160 6-124 (288)
18 2re1_A Aspartokinase, alpha an 97.2 0.0016 5.6E-08 57.9 10.3 103 258-369 24-138 (167)
19 3n0v_A Formyltetrahydrofolate 97.2 0.012 4E-07 57.1 16.3 49 37-85 8-58 (286)
20 3lou_A Formyltetrahydrofolate 97.1 0.0057 1.9E-07 59.5 13.8 37 259-295 10-46 (292)
21 3nrb_A Formyltetrahydrofolate 97.1 0.0066 2.2E-07 58.9 14.0 100 259-365 7-116 (287)
22 3n0v_A Formyltetrahydrofolate 97.1 0.01 3.5E-07 57.5 15.0 37 259-295 8-44 (286)
23 3o1l_A Formyltetrahydrofolate 97.1 0.0084 2.9E-07 58.5 14.3 100 260-364 23-132 (302)
24 3nrb_A Formyltetrahydrofolate 97.0 0.018 6.2E-07 55.8 15.9 49 36-84 6-56 (287)
25 3lou_A Formyltetrahydrofolate 96.9 0.015 5.2E-07 56.4 14.7 49 36-84 9-59 (292)
26 2dtj_A Aspartokinase; protein- 96.8 0.01 3.5E-07 53.3 11.5 110 35-156 13-129 (178)
27 2f1f_A Acetolactate synthase i 96.8 0.0041 1.4E-07 55.3 8.6 70 338-413 4-77 (164)
28 2dt9_A Aspartokinase; protein- 96.7 0.0027 9.4E-08 56.4 7.0 109 35-156 14-129 (167)
29 2dtj_A Aspartokinase; protein- 96.7 0.0077 2.6E-07 54.1 10.1 132 257-405 13-158 (178)
30 2dt9_A Aspartokinase; protein- 96.7 0.0083 2.8E-07 53.2 10.0 118 257-384 14-141 (167)
31 2f1f_A Acetolactate synthase i 96.7 0.0042 1.5E-07 55.2 7.8 64 125-196 3-68 (164)
32 2pc6_A Probable acetolactate s 96.5 0.0067 2.3E-07 53.9 7.6 70 338-413 5-78 (165)
33 2pc6_A Probable acetolactate s 96.4 0.0081 2.8E-07 53.4 7.7 65 125-197 4-70 (165)
34 3l76_A Aspartokinase; alloster 96.3 0.2 6.7E-06 53.5 19.1 190 35-291 353-562 (600)
35 2fgc_A Acetolactate synthase, 96.2 0.079 2.7E-06 48.0 13.3 128 38-193 30-166 (193)
36 2jhe_A Transcription regulator 96.1 0.018 6E-07 50.8 8.7 59 127-195 2-60 (190)
37 3s1t_A Aspartokinase; ACT doma 96.1 0.015 5.3E-07 52.3 8.2 110 36-157 15-131 (181)
38 2jhe_A Transcription regulator 95.9 0.0091 3.1E-07 52.7 5.6 36 339-374 2-37 (190)
39 2fgc_A Acetolactate synthase, 95.8 0.038 1.3E-06 50.2 9.3 67 124-198 28-96 (193)
40 1y7p_A Hypothetical protein AF 95.8 0.012 4.2E-07 54.3 5.9 49 125-173 4-57 (223)
41 3ab4_A Aspartokinase; aspartat 95.3 0.1 3.5E-06 53.1 11.5 109 36-156 263-378 (421)
42 3s1t_A Aspartokinase; ACT doma 95.1 0.12 4.2E-06 46.3 10.2 134 258-405 15-159 (181)
43 4go7_X Aspartokinase; transfer 94.7 0.099 3.4E-06 47.8 8.5 135 257-405 33-178 (200)
44 4go7_X Aspartokinase; transfer 94.6 0.055 1.9E-06 49.5 6.6 111 35-157 33-150 (200)
45 3ab4_A Aspartokinase; aspartat 94.4 0.23 7.9E-06 50.5 11.2 135 257-405 262-407 (421)
46 1y7p_A Hypothetical protein AF 94.3 0.077 2.6E-06 48.9 6.8 47 38-84 5-56 (223)
47 2qmx_A Prephenate dehydratase; 94.2 0.13 4.4E-06 49.6 8.3 99 282-394 156-257 (283)
48 3mwb_A Prephenate dehydratase; 94.1 0.11 3.9E-06 50.7 7.9 98 282-399 163-264 (313)
49 3luy_A Probable chorismate mut 93.7 0.25 8.7E-06 48.5 9.7 62 338-400 207-271 (329)
50 3c1m_A Probable aspartokinase; 93.5 0.46 1.6E-05 49.1 11.5 131 257-405 316-469 (473)
51 1ygy_A PGDH, D-3-phosphoglycer 92.9 0.35 1.2E-05 50.7 9.7 65 335-401 452-516 (529)
52 2qmw_A PDT, prephenate dehydra 92.5 0.4 1.4E-05 45.7 8.7 88 282-394 153-245 (267)
53 1sc6_A PGDH, D-3-phosphoglycer 91.8 0.27 9.4E-06 49.7 7.0 47 337-383 331-377 (404)
54 3c1m_A Probable aspartokinase; 91.6 0.99 3.4E-05 46.6 11.2 106 36-154 317-436 (473)
55 3tvi_A Aspartokinase; structur 89.9 2.7 9.2E-05 43.0 12.4 116 257-384 296-422 (446)
56 1ygy_A PGDH, D-3-phosphoglycer 89.7 1.2 4.2E-05 46.5 9.9 64 122-191 451-516 (529)
57 3tvi_A Aspartokinase; structur 88.4 1.1 3.8E-05 45.8 8.3 109 37-160 298-412 (446)
58 1sc6_A PGDH, D-3-phosphoglycer 88.3 1.3 4.5E-05 44.7 8.6 49 36-84 330-378 (404)
59 3k5p_A D-3-phosphoglycerate de 86.8 0.95 3.3E-05 45.9 6.5 49 35-83 341-389 (416)
60 2cdq_A Aspartokinase; aspartat 83.7 4.1 0.00014 42.4 9.7 109 36-157 340-454 (510)
61 3mtj_A Homoserine dehydrogenas 83.4 0.93 3.2E-05 46.4 4.6 33 337-369 359-391 (444)
62 3k5p_A D-3-phosphoglycerate de 83.1 5.8 0.0002 40.1 10.3 50 123-172 341-390 (416)
63 3mah_A Aspartokinase; aspartat 80.1 2.6 9E-05 36.3 5.7 127 258-405 17-151 (157)
64 3mah_A Aspartokinase; aspartat 80.0 2 6.7E-05 37.2 4.9 113 36-173 17-135 (157)
65 2cdq_A Aspartokinase; aspartat 78.3 7.9 0.00027 40.2 9.6 119 257-384 339-467 (510)
66 2qmx_A Prephenate dehydratase; 76.5 9.9 0.00034 36.3 9.0 53 124-178 199-252 (283)
67 3luy_A Probable chorismate mut 75.4 15 0.00051 35.9 10.1 52 125-178 206-260 (329)
68 1phz_A Protein (phenylalanine 73.4 4.9 0.00017 40.6 6.2 50 337-387 34-84 (429)
69 3mwb_A Prephenate dehydratase; 72.2 15 0.00052 35.6 9.2 53 124-178 200-254 (313)
70 2qmw_A PDT, prephenate dehydra 70.9 18 0.00061 34.2 9.2 51 123-173 184-238 (267)
71 3mtj_A Homoserine dehydrogenas 66.7 9.4 0.00032 38.9 6.7 52 122-173 356-409 (444)
72 1ib8_A Conserved protein SP14. 58.0 49 0.0017 28.7 8.9 85 272-363 14-105 (164)
73 3g12_A Putative lactoylglutath 48.2 51 0.0017 26.3 7.1 49 36-91 66-115 (128)
74 1phz_A Protein (phenylalanine 39.7 27 0.00094 35.2 4.7 51 123-173 32-83 (429)
75 1rwu_A Hypothetical UPF0250 pr 38.0 1.5E+02 0.0051 23.8 8.1 64 37-107 36-102 (109)
76 3g12_A Putative lactoylglutath 34.5 98 0.0034 24.5 6.7 49 258-313 66-115 (128)
77 2j0w_A Lysine-sensitive aspart 31.5 37 0.0013 34.5 4.3 119 257-384 306-432 (449)
78 1tdj_A Biosynthetic threonine 29.4 1.7E+02 0.0059 30.1 8.9 129 38-173 339-483 (514)
79 3ble_A Citramalate synthase fr 27.7 2.6E+02 0.0089 26.8 9.5 89 269-379 167-255 (337)
80 1zhv_A Hypothetical protein AT 26.7 44 0.0015 28.0 3.2 45 124-173 61-108 (134)
81 3r6a_A Uncharacterized protein 26.0 1.5E+02 0.0052 24.1 6.6 47 38-91 67-113 (144)
82 2j0w_A Lysine-sensitive aspart 25.0 34 0.0012 34.7 2.7 104 37-155 308-417 (449)
83 3dhx_A Methionine import ATP-b 24.9 1.9E+02 0.0064 22.7 6.6 39 270-310 35-73 (106)
84 3ced_A Methionine import ATP-b 23.4 2.3E+02 0.0078 21.9 6.8 54 348-405 34-87 (98)
85 2qsw_A Methionine import ATP-b 21.6 2.8E+02 0.0094 21.3 7.4 40 269-310 36-75 (100)
86 1rwu_A Hypothetical UPF0250 pr 20.8 3.2E+02 0.011 21.8 8.1 61 259-326 36-99 (109)
87 3ced_A Methionine import ATP-b 20.6 2.9E+02 0.01 21.2 8.6 40 269-310 33-72 (98)
88 3ewb_X 2-isopropylmalate synth 20.5 5.2E+02 0.018 24.1 10.2 91 267-376 146-236 (293)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.75 E-value=5e-18 Score=157.49 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=109.6
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER---- 332 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~---- 332 (449)
..++|+|+|+|||||++.++.+|+++|+||.+|++.+. |++++ .|.+... + .....+++.|++.|...+..
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~-~--~~~~~~~~~l~~~L~~~~~~~~~~ 79 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLN-A--KDGKLIQSALESALPGFQISTRRA 79 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEES-S--SSSHHHHHHHHHHSTTCEEEEEEC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEec-C--ccchhHHHHHHHHHHHHHHhcCCe
Confidence 34799999999999999999999999999999999988 55666 6777533 2 12223567777777654421
Q ss_pred --------c-cCCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC--CceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 333 --------R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 333 --------r-~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g--~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
. ....+.|+|.|+|||||+++||++|.++|+||..+++.|.+ ++++++|++....+.|- ... +.|++
T Consensus 80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~ 157 (195)
T 2nyi_A 80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVT 157 (195)
T ss_dssp CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHH
T ss_pred EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHH
Confidence 0 12358999999999999999999999999999999999998 78899999987766552 223 56666
Q ss_pred Hhc
Q 013090 402 SIG 404 (449)
Q Consensus 402 ~l~ 404 (449)
+|.
T Consensus 158 ~l~ 160 (195)
T 2nyi_A 158 ALS 160 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 2
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.73 E-value=3.7e-17 Score=151.56 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=113.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-ccC---
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-FAS--- 112 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~~~--- 112 (449)
.++|+|+|+|||||+++++++|+++|+||.+|++++..|.+.-.|.|..+.. ..+...+.|++.|..... +..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~~ 81 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRASS 81 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECCC
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999999999999999999999999975554444888865421 223356788888875532 100
Q ss_pred CcceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC--CceEEEEEEeeCCCCCCCCCHHHHHHHH
Q 013090 113 SMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIK 190 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~--~~~~dvf~V~~~~~g~~i~~~~~~~~l~ 190 (449)
.+.... ......++|+|.|+|||||+++|+++|+++|+||..++..|.+ ++..+.|++... -+.+ ++.. +.|+
T Consensus 82 ~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l~ 156 (195)
T 2nyi_A 82 VAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEVV 156 (195)
T ss_dssp C----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHHH
T ss_pred EEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHHH
Confidence 000001 2345678999999999999999999999999999999999977 667788888763 2222 2344 7788
Q ss_pred HHhcccc
Q 013090 191 ELLCNVL 197 (449)
Q Consensus 191 ~~L~~~L 197 (449)
+.|..+.
T Consensus 157 ~~l~~~a 163 (195)
T 2nyi_A 157 TALSRVE 163 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776544
No 3
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.69 E-value=4.7e-16 Score=143.58 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=105.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh------
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER------ 332 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~------ 332 (449)
..+|+|+|+|||||+++++.+|+++|+||.++++.+.++...-.|.+... ....++|++.|.....+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~ 78 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM 78 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999999999999999886544446777432 13567888888765531
Q ss_pred --cc--------CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCC----ceeeEEEEEcCCCCCCCHHHHHH
Q 013090 333 --RV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG----KAVNTFYVGGASGYPVDAKIIDS 398 (449)
Q Consensus 333 --r~--------~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~----~~~d~F~v~~~~g~p~~~~~~~~ 398 (449)
+. ...++|++.+.||||++++|+++|.++|+||.+++..|.++ ++++.|++....+.|-+.. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~-~~~ 157 (192)
T 1u8s_A 79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCN-LMQ 157 (192)
T ss_dssp EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSC-HHH
T ss_pred EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCC-HHH
Confidence 11 13589999999999999999999999999999999999985 6899999987655442222 355
Q ss_pred HHHHhc
Q 013090 399 IRQSIG 404 (449)
Q Consensus 399 lr~~l~ 404 (449)
|+++|.
T Consensus 158 l~~~l~ 163 (192)
T 1u8s_A 158 LQEEFD 163 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 4
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.63 E-value=2.8e-15 Score=138.42 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=106.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc-ccCC-c
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC-FASS-M 114 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~-~~~~-~ 114 (449)
..+|+|+|+||||++++++++|+++|+||.++++++..|.+.-.|.|..+. ...+.|++.|..... .... .
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~~ 78 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLITM 78 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999999999999998767666688886431 244566666553321 0000 0
Q ss_pred -cee---eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCC----ceEEEEEEeeCCCCCCCCCHHHH
Q 013090 115 -RSV---GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT----RAAALMQVTDEETGGAISDPERL 186 (449)
Q Consensus 115 -~~V---~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~----~~~dvf~V~~~~~g~~i~~~~~~ 186 (449)
+.. ........++|+|.|+||||++++|+.+|+++|+||.+++..|.+. +..+.|+++.. -+.+ ++...
T Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~~ 155 (192)
T 1u8s_A 79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCNL 155 (192)
T ss_dssp EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSCH
T ss_pred EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCCH
Confidence 000 0123446789999999999999999999999999999999999763 56788888763 1211 12235
Q ss_pred HHHHHHhcccc
Q 013090 187 SVIKELLCNVL 197 (449)
Q Consensus 187 ~~l~~~L~~~L 197 (449)
+.|++.|..+.
T Consensus 156 ~~l~~~l~~~~ 166 (192)
T 1u8s_A 156 MQLQEEFDALC 166 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777776543
No 5
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.75 E-value=1.4e-07 Score=96.53 Aligned_cols=122 Identities=10% Similarity=0.046 Sum_probs=86.9
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh------
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE------ 331 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~------ 331 (449)
...+|+|.|+|||||++.++..|+++|+||.+++..+.++++.-...+ +.++... ..+.|++.|...-+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLV-CCPADVA----DGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEE-EECHHHH----TSHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEE-EecCCcC----CHHHHHHHHHHHHHHcCeEE
Confidence 356899999999999999999999999999999999887655322223 2111100 12566666654321
Q ss_pred --hc------c--CCceEEEEEeCC-CcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090 332 --RR------V--SEGLKLELCTTD-RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 384 (449)
Q Consensus 332 --~r------~--~~~~~l~v~~~D-rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~ 384 (449)
++ . ..++.+++.+.| +||++.+|+.++.++|+||..++.-+......=-|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~ 149 (415)
T 3p96_A 86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS 149 (415)
T ss_dssp EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence 11 1 236899999999 99999999999999999999988665322222236664
No 6
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.72 E-value=1.4e-07 Score=96.59 Aligned_cols=132 Identities=11% Similarity=0.000 Sum_probs=91.8
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccc------
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEAC------ 109 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~------ 109 (449)
...+|+|.|+||||+.+.++++|+++|+||.+...++.+|+|.-...+.-+... .+ .+.|++.|.....
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCeEE
Confidence 456899999999999999999999999999999999888887666666432211 01 1344444433211
Q ss_pred -ccCCcceeeccCCCceEEEEEEeCC-ccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 110 -FASSMRSVGVKQSMDHTAIELTGSD-RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 110 -~~~~~~~V~~~~~~~~t~i~v~~~D-rpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
......... .....+..+++.+.| ++|++.+|+.+++++|+||...+.-+......--|+|..
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~ 150 (415)
T 3p96_A 86 SIERSDDVPI-IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV 150 (415)
T ss_dssp EEEECSSSCS-SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred EEEECCcccc-cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence 001100000 123467889999999 999999999999999999988887764333333366653
No 7
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.54 E-value=2.1e-06 Score=74.76 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=75.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCccee
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSV 117 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~~V 117 (449)
.+++|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+. +. +..++.|.... + . +
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G-~---~--v 69 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNH-F---A--V 69 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTT-C---C--E
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcC-C---e--E
Confidence 57899999999999999999999999999877653222112224331 22 22333343221 0 0 0
Q ss_pred eccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090 118 GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172 (449)
Q Consensus 118 ~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~ 172 (449)
....++.+..+|+||.+++++++|++.|+||.+...+..+++...+|.+.
T Consensus 70 -----~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~ 119 (144)
T 2f06_A 70 -----NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS 119 (144)
T ss_dssp -----EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred -----eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC
Confidence 01246777889999999999999999999998777653344555555443
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.26 E-value=1.6e-05 Score=69.12 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=72.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLK 339 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~ 339 (449)
..++|..+|+||.+++++..|++.|+||..-.+....+...=.|.+ .+. +..++.|++. .-.......
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--------~d~---~~a~~~L~~~-G~~v~~~sv 74 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--------SDP---DKAYKALKDN-HFAVNITDV 74 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--------SCH---HHHHHHHHHT-TCCEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--------CCH---HHHHHHHHHc-CCeEeeeeE
Confidence 4688889999999999999999999999997776443322111322 122 3334444421 111111234
Q ss_pred EEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090 340 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383 (449)
Q Consensus 340 l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v 383 (449)
+-+.-.|+||.+++++++|.++|+||.+...+..+.++.=.|..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 55566899999999999999999999887755323333334433
No 9
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.11 E-value=8e-06 Score=65.09 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=51.3
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
....|+|.|+||||++++|+++|+++|+||.+....+.++.+...+.+.-+ +. ..++.|.+.|.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~ 68 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence 457899999999999999999999999999999998877776666776542 21 234666676655
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.91 E-value=6.1e-05 Score=59.20 Aligned_cols=64 Identities=13% Similarity=0.325 Sum_probs=49.5
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..+ +...++.+.+.|.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHTT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999998866655555555531 24566666666544
No 11
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.90 E-value=8.5e-05 Score=59.00 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDE 86 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~ 86 (449)
...++|.++||||++++++++|+++|+||.+....+.++.+.-.+.+.-+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~ 54 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD 54 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence 46799999999999999999999999999999998877888777777543
No 12
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=97.74 E-value=0.018 Score=61.46 Aligned_cols=292 Identities=11% Similarity=0.107 Sum_probs=161.7
Q ss_pred EEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC---
Q 013090 39 VIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS--- 113 (449)
Q Consensus 39 ~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~--- 113 (449)
.|++. .++.||.++++-+.|+++|++|.--..+ +.+|..--.|.|...+- +...+.+ +.+...+...++
T Consensus 272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l-~~~~~el~~~~~~~~ 345 (600)
T 3l76_A 272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVT-SAIAPALRSYPEADQ 345 (600)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHH-HHHGGGGSSSTTCSS
T ss_pred EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHH-HHHHHHhhccccccC
Confidence 34443 4789999999999999999999533322 24566556677743211 1111122 222222100001
Q ss_pred cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHH
Q 013090 114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIK 190 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~ 190 (449)
-..+. ...+...|.|+|. .+||+.+++..+|++.|+||..-. |. ..--.|.|... ..++..
T Consensus 346 ~~~v~--~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~~----------d~~~Av 409 (600)
T 3l76_A 346 EAEII--VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQR----------DADRAI 409 (600)
T ss_dssp SSEEE--EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGG----------GHHHHH
T ss_pred cceeE--ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcHH----------HHHHHH
Confidence 11222 2345778999987 689999999999999999997665 22 22344555531 112222
Q ss_pred HHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCCceeEEEEE-cCCC
Q 013090 191 ELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDR 269 (449)
Q Consensus 191 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~Dr 269 (449)
+.|++.+..+.... . .+ +...+. ..-.-|..+ ++.+.|.|. .+|+
T Consensus 410 ~aLh~~f~~~~t~~---~----------~~-------~~~~~~----------~~v~Gia~~----~~~a~i~i~~~~~~ 455 (600)
T 3l76_A 410 AALSNAFGVTLSPP---K----------NQ-------TDTSHL----------PAVRGVALD----QDQAQIAIRHVPDR 455 (600)
T ss_dssp HHHHHHTTCCBCCC---C----------CC-------CC---C----------CSCCEEEEE----CSEEEEEEEEEESS
T ss_pred HHHHHhhcccCCCc---c----------cc-------cccccc----------CceEEEEee----CCEEEEEEecCCCC
Confidence 33333332211000 0 00 000000 011234443 344556554 5899
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecC----C--eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc--------C
Q 013090 270 PKLVFDTVCTLTDMQYVVFHANIDAEG----P--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV--------S 335 (449)
Q Consensus 270 pgLl~~i~~~L~~~gl~I~~A~i~t~g----~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~--------~ 335 (449)
||+.+++...|++.|+||.--..+... + ..-=.|.|.. ..++...+.|++... .. +
T Consensus 456 ~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~~~-~~~~~~v~~~~ 525 (600)
T 3l76_A 456 PGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPLIK-DWLDAAIVVNK 525 (600)
T ss_dssp TTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHHTT-TSTTCEEEEEC
T ss_pred ccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHHHH-hcCCceEEEeC
Confidence 999999999999999999654333221 2 1222355522 234444444444221 11 2
Q ss_pred CceEEEEEe---CCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhc
Q 013090 336 EGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG 404 (449)
Q Consensus 336 ~~~~l~v~~---~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~ 404 (449)
.-.++.+++ ..+||+.+++-++|.+.||||.... |- ...=.+.|...+ ....+.+|.++|+
T Consensus 526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tS--Ei~Is~vV~~~~----~~~Av~alh~~F~ 589 (600)
T 3l76_A 526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TS--EIKISCVVPQDR----GVDALKAAHSAFN 589 (600)
T ss_dssp CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--EC--SSEEEEEEEGGG----HHHHHHHHHHHTT
T ss_pred CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cC--CceEEEEEeHHH----HHHHHHHHHHHhC
Confidence 247889987 4999999999999999999998766 21 123355553221 1223456666664
No 13
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.73 E-value=0.00014 Score=57.09 Aligned_cols=64 Identities=8% Similarity=0.173 Sum_probs=49.1
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.+.|.+.+.||||+|++|+.+|.++|+||.++.+.+.++.+...|.+.-. +...++++.++|.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999998776545555555322 33445677777765
No 14
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.48 E-value=0.0015 Score=58.09 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=73.7
Q ss_pred CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090 36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS 113 (449)
Q Consensus 36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~ 113 (449)
+.+.|+|. .+|+||.++++.++|+++|+||.--... +.+|...-.|.|...+. +...+.|++ +...+..
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~--- 94 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA--- 94 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC---
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC---
Confidence 55788998 5999999999999999999999865543 23455555677743111 112222322 2211111
Q ss_pred cceeeccCCCceEEEEEEeCC---ccchHHHHHHHHHhCCCeEEEE
Q 013090 114 MRSVGVKQSMDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A 156 (449)
..+. ...+...+.|.|.+ +||+++++..+|++.|+||..-
T Consensus 95 -~~i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 95 -ASID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp -SEEE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred -ceEE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 1122 23457889999988 9999999999999999999883
No 15
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.28 E-value=0.0062 Score=59.12 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----- 331 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----- 331 (449)
..+++|.|+|||||++.++..|+++|+||.+++..+. .+++.-...+ +..+... ..++|++.|...-+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~~----~~~~L~~~f~~la~~~~m~ 80 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NAAAKVI----PLASLRTGFGVIAAKFTMG 80 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EESSCCC----CHHHHHHHHHHHHHHTTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-EcCCCCC----CHHHHHHHHHHHHHHcCCE
Confidence 3689999999999999999999999999999998754 4444322222 2222112 23566666653322
Q ss_pred ---hccCCceEEEEEeCCCcChHHHHHHHHHhCCCcEE
Q 013090 332 ---RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT 366 (449)
Q Consensus 332 ---~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~ 366 (449)
+...+..++-|-...+---|.++-...++-.++..
T Consensus 81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~ 118 (288)
T 3obi_A 81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMI 118 (288)
T ss_dssp EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEE
T ss_pred EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeE
Confidence 11233445555555555577788777777766543
No 16
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.27 E-value=0.0045 Score=60.48 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=42.9
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEc
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD--GCWFMDVFNVTD 85 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~--~g~~~d~F~V~~ 85 (449)
...++++.|+||||+.++|+++|+++|+||.+++.+++ .|+|.-...+.-
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~ 72 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA 72 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence 44689999999999999999999999999999999975 677766665643
No 17
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.26 E-value=0.009 Score=57.94 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSM 114 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~ 114 (449)
..++++.|+||||+.++++++|+++|+||.+.+.++ ..|+|.-...+.-+++. .+ .+.|++.|...... -.
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~----~~~L~~~f~~la~~--~~ 78 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IP----LASLRTGFGVIAAK--FT 78 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CC----HHHHHHHHHHHHHH--TT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHHHHHH--cC
Confidence 468999999999999999999999999999999985 46777666555433321 12 24555555432110 00
Q ss_pred ceeeccCCCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 115 RSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 115 ~~V~~~~~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
-.+.+........|-|...-+---|..|-.....-.+++.=+-+-+
T Consensus 79 m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 124 (288)
T 3obi_A 79 MGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 124 (288)
T ss_dssp CEEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred CEEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence 0111211122334444444444566777766666555544333333
No 18
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.24 E-value=0.0016 Score=57.87 Aligned_cols=103 Identities=11% Similarity=0.196 Sum_probs=70.9
Q ss_pred ceeEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013090 258 DYSVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER 332 (449)
Q Consensus 258 ~~tvv~V~~-~DrpgLl~~i~~~L~~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~~ 332 (449)
+.+.|+|.+ +|+||.++++...|++.|+||..-..+.. ++...=.|+|.. ...++..+.|.+. +..
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~---------~~~~~a~~~l~~~~~~l~~ 94 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR---------GDYKQTLEILSERQDSIGA 94 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG---------GGHHHHHHHHHHSSTTTTC
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec---------hHHHHHHHHHHHHHHHcCC
Confidence 456788884 99999999999999999999998665433 333323466621 1123333444432 111
Q ss_pred c----cCCceEEEEEeCC---CcChHHHHHHHHHhCCCcEEEEE
Q 013090 333 R----VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 333 r----~~~~~~l~v~~~D---rpGLL~~it~~l~~~~i~I~~a~ 369 (449)
. ...-..++|.+.+ +||+++++..+|.++||||....
T Consensus 95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 0 1124789999986 99999999999999999999843
No 19
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.17 E-value=0.012 Score=57.10 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=41.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVTD 85 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~~ 85 (449)
..+++|.|+||||+.++++++|+++|+||.+.+.++ ..|+|.-...+.-
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 58 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ 58 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence 468999999999999999999999999999999986 4577655555543
No 20
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.14 E-value=0.0057 Score=59.47 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=34.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 295 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~ 295 (449)
..+++|.|+|||||++.++..|+++|+||.+++..+.
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d 46 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD 46 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence 3689999999999999999999999999999999854
No 21
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.12 E-value=0.0066 Score=58.89 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----- 331 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~----- 331 (449)
..+++|.|+|||||++.++..|+++|+||.+++..+. .+++.-...+ +.++ . ..++|++.|...-+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~--~----~~~~L~~~f~~la~~~~m~ 79 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIPV--A----GVNDFNSAFGKVVEKYNAE 79 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECCC---------CHHHHHHHHHHGGGTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcCC--C----CHHHHHHHHHHHHHHcCCe
Confidence 4689999999999999999999999999999999754 4443211111 2211 1 12356666653322
Q ss_pred ---hccCCceEEEEEeCCCcChHHHHHHHHHhCCCcE
Q 013090 332 ---RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTV 365 (449)
Q Consensus 332 ---~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I 365 (449)
+...+..++-|-...+---|.++-...++-.++.
T Consensus 80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~ 116 (287)
T 3nrb_A 80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDM 116 (287)
T ss_dssp EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCC
T ss_pred eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCe
Confidence 1122334454444444456777777777766654
No 22
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.10 E-value=0.01 Score=57.54 Aligned_cols=37 Identities=11% Similarity=-0.102 Sum_probs=34.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 295 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~ 295 (449)
..+++|.|+|||||++.++..|+++|+||.+++..+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 44 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD 44 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence 3689999999999999999999999999999998854
No 23
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.07 E-value=0.0084 Score=58.51 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=59.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH---Hh---
Q 013090 260 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IE--- 331 (449)
Q Consensus 260 tvv~V~~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~---l~--- 331 (449)
.+++|.|+|||||++.++..|+++|+||.++...+. .+++.-...+ +..+... ..++|++.|... +.
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~-~~~~~~~----~~~~L~~~l~~la~~l~m~~ 97 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI-RADTLPF----DLDGFREAFTPIAEEFSMDW 97 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE-EGGGSSS----CHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE-ecCCCCC----CHHHHHHHHHHHHHHhCCee
Confidence 589999999999999999999999999999999875 3444222222 2211111 235666666432 21
Q ss_pred --hccCCceEEEEEeCCCcChHHHHHHHHHhCCCc
Q 013090 332 --RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLT 364 (449)
Q Consensus 332 --~r~~~~~~l~v~~~DrpGLL~~it~~l~~~~i~ 364 (449)
+...+..++-|-+..+..-|.++-...++-.++
T Consensus 98 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~ 132 (302)
T 3o1l_A 98 RITDSAQKKRVVLMASRESHCLADLLHRWHSDELD 132 (302)
T ss_dssp EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSC
T ss_pred eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCC
Confidence 111223334343333334566666666555443
No 24
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.01 E-value=0.018 Score=55.78 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=41.4
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT 84 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~ 84 (449)
...++++.|+||||+.++|+++|+++|+||.+.+.++ ..|+|.-...+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~ 56 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE 56 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE
Confidence 3568999999999999999999999999999999985 467776555553
No 25
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.94 E-value=0.015 Score=56.43 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=41.1
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISS--DGCWFMDVFNVT 84 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t--~~g~~~d~F~V~ 84 (449)
...++++.|+||||+.++|+++|+++|+||.+.+.++ ..|+|.-...+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~ 59 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH 59 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence 3468999999999999999999999999999999986 457765554443
No 26
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=96.81 E-value=0.01 Score=53.28 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=73.3
Q ss_pred CCeEEEEE-EeCCCcchHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090 35 KNATVIRV-DSANKHGILLEVVQVLTDLNLIVTKAYISSD---GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF 110 (449)
Q Consensus 35 ~~~t~V~V-~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~ 110 (449)
.+.+.|+| ..+|+||.++++.+.|+++|+||.--...+. ++..--.|.|... ..+...+.|.+...
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~- 82 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQV- 82 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTT-
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHH-
Confidence 36678888 4799999999999999999999985554432 3322224777532 11223344443211
Q ss_pred cCCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEE
Q 013090 111 ASSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 111 ~~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A 156 (449)
......+. ...+...|.|.|. ++||.++++..+|++.|+||..-
T Consensus 83 ~~~~~~v~--~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i 129 (178)
T 2dtj_A 83 QGNWTNVL--YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI 129 (178)
T ss_dssp TTTCSEEE--EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred hcCCCeEE--EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence 00011222 2345778888887 89999999999999999999884
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.79 E-value=0.0041 Score=55.26 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=50.4
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN 413 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~ 413 (449)
+.|++...||||+|++|+++|+++|+||.++.+.+..+. ..=.|.+. + +...++++.+++.+ .+++|...
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~---d~~~leqI~kqL~Kl~dV~~V~r~ 77 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G---DEKVLEQIEKQLHKLVDVLRVSEL 77 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S---CHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---c---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 578999999999999999999999999999998754322 33344553 2 24456777777765 24455443
No 28
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=96.73 E-value=0.0027 Score=56.37 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCeEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090 35 KNATVIRVDS-ANKHGILLEVVQVLTDLNLIVTKAYISS---DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF 110 (449)
Q Consensus 35 ~~~t~V~V~~-~Dr~GLl~~i~~vL~~~gl~I~~A~I~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~ 110 (449)
.+.+.|+|.+ +|+||.++++.++|+++|+||.--.... +.|..--.|.|...+. +...+.|++ +.....+
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~~ 87 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIGG 87 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHCC
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhCC
Confidence 3567788775 8999999999999999999998544332 1344455688854221 112222222 1111111
Q ss_pred cCCcceeeccCCCceEEEEEEeCC---ccchHHHHHHHHHhCCCeEEEE
Q 013090 111 ASSMRSVGVKQSMDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 111 ~~~~~~V~~~~~~~~t~i~v~~~D---rpGLl~~I~~~l~~~g~~I~~A 156 (449)
.+.. ..+...+.|+|.+ +||.++++..+|++.|+||..-
T Consensus 88 -----~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 88 -----EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp -----EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred -----cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 1222 3457789999987 9999999999999999999443
No 29
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=96.73 E-value=0.0077 Score=54.09 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=83.1
Q ss_pred CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090 257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 332 (449)
Q Consensus 257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~ 332 (449)
++.+.|+|. .+|+||.++++...|++.|+||..-..++. ++...=.|.+.. ...++..+.|.+....
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~ 83 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ 83 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence 345677773 589999999999999999999988666544 222211265522 2233444445432111
Q ss_pred ---c----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHH
Q 013090 333 ---R----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQS 402 (449)
Q Consensus 333 ---r----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~ 402 (449)
. .+.-..+++.+. ++||+++++.++|.+.||||.... |. ...-.|.|...+ ....+..|.++
T Consensus 84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tS--e~~Is~vV~~~d----~~~Av~~Lh~~ 155 (178)
T 2dtj_A 84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TS--EIRISVLIREDD----LDAAARALHEQ 155 (178)
T ss_dssp TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHH
T ss_pred cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeHHH----HHHHHHHHHHH
Confidence 0 123477888886 899999999999999999998843 32 133356662111 11234566766
Q ss_pred hcc
Q 013090 403 IGQ 405 (449)
Q Consensus 403 l~~ 405 (449)
|..
T Consensus 156 F~l 158 (178)
T 2dtj_A 156 FQL 158 (178)
T ss_dssp HTC
T ss_pred Hcc
Confidence 654
No 30
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=96.71 E-value=0.0083 Score=53.22 Aligned_cols=118 Identities=8% Similarity=0.049 Sum_probs=74.1
Q ss_pred CceeEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090 257 KDYSVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 332 (449)
Q Consensus 257 ~~~tvv~V~~-~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~ 332 (449)
++.+.|+|.+ +|+||.++++...|++.|+||..-..... .+...=.|.|... +..+..++.+.+...+.-
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~------d~~~a~~~L~~~~~~~~~ 87 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD------FAQEALEALEPVLAEIGG 87 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG------GHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH------HHHHHHHHHHHHHHHhCC
Confidence 3556777776 89999999999999999999988544322 1233234666321 111222222223333321
Q ss_pred c---cCCceEEEEEeCC---CcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEE
Q 013090 333 R---VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 384 (449)
Q Consensus 333 r---~~~~~~l~v~~~D---rpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~ 384 (449)
. .+.-..+.+.|.+ +||+++++.++|.+.||||.... |. +. .-.|.|.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~ 141 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIP 141 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEe
Confidence 1 1234668899976 99999999999999999995443 33 22 3456663
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.69 E-value=0.0042 Score=55.19 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=50.1
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNV 196 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (449)
...|+|...|+||+|++|+++|++.|+||.+..+.+ .+ +...-+|.|.. +...++.+..+|.++
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999875 33 44556666652 146778888877653
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.47 E-value=0.0067 Score=53.92 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=50.5
Q ss_pred eEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCc--eeeEEEEEcCCCCCCCHHHHHHHHHHhcc--ceeeecCC
Q 013090 338 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ--TILKVKGN 413 (449)
Q Consensus 338 ~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~--~~d~F~v~~~~g~p~~~~~~~~lr~~l~~--~~~~~~~~ 413 (449)
+.|++...||||+|++|+++|+++|+||.++.+.+..+. ..=.|.+. + +...+++|..++.+ .+++|..-
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~---d~~~leql~kQL~Kl~dV~~V~~~ 78 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---G---PDEIVEQITKQLNKLIEVVKLIDL 78 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---E---CHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---c---cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 578999999999999999999999999999998654332 22244453 2 24456788887776 24555543
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.38 E-value=0.0081 Score=53.39 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=50.6
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc-cC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcccc
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 197 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T-~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L 197 (449)
...|.|...|+||+|++|+++|+..|+||.+..+.+ .+ +...-+|.|.. +...++.+..+|.++.
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999998875 43 44556666653 1467788888776543
No 34
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.28 E-value=0.2 Score=53.47 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=115.6
Q ss_pred CCeEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090 35 KNATVIRVDSA---NKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 35 ~~~t~V~V~~~---Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~ 111 (449)
.+...|.|.+. ++||+.+++..+|.+.|+||.-.. +.+- --.|.|...+ .+...+.|.+.+.......
T Consensus 353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~--~Is~vI~~~d-----~~~Av~aLh~~f~~~~t~~ 423 (600)
T 3l76_A 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV--KVSCVIDQRD-----ADRAIAALSNAFGVTLSPP 423 (600)
T ss_dssp CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS--EEEEEEEGGG-----HHHHHHHHHHHTTCCBCCC
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC--EEEEEEcHHH-----HHHHHHHHHHhhcccCCCc
Confidence 45678888875 789999999999999999997544 3222 1235554321 1235556666664431100
Q ss_pred CC------ccee-eccCCCceEEEEEE-eCCccchHHHHHHHHHhCCCeEEEEEEEc--c--CCc--eEEEEEEeeCCCC
Q 013090 112 SS------MRSV-GVKQSMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT--H--NTR--AAALMQVTDEETG 177 (449)
Q Consensus 112 ~~------~~~V-~~~~~~~~t~i~v~-~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~--~~~--~~dvf~V~~~~~g 177 (449)
.+ ...| +.....+...|++. .+|+||+.++|...|+++|+||..-.-+. + +|. .--.|.|..
T Consensus 424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---- 499 (600)
T 3l76_A 424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---- 499 (600)
T ss_dssp CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence 00 1111 23334556677775 59999999999999999999995444332 1 242 234455543
Q ss_pred CCCCCHHHHHHHHHHhcccccCccccCCccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCcEEEEecCCCC
Q 013090 178 GAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 257 (449)
Q Consensus 178 ~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~rR~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~ 257 (449)
+.+++..+.|.+ +..+.. .-.|.++ +
T Consensus 500 ------~d~~~a~~~l~~-~~~~~~-------------------------------------------~~~v~~~----~ 525 (600)
T 3l76_A 500 ------GDSSQAEAILQP-LIKDWL-------------------------------------------DAAIVVN----K 525 (600)
T ss_dssp ------HHHHHHHHHHHH-HTTTST-------------------------------------------TCEEEEE----C
T ss_pred ------HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----C
Confidence 222333332222 111110 0122232 2
Q ss_pred ceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEE
Q 013090 258 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHAN 291 (449)
Q Consensus 258 ~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~ 291 (449)
+...|.|.| +.+||+-+++.++|.+.|+||..-.
T Consensus 526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis 562 (600)
T 3l76_A 526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA 562 (600)
T ss_dssp CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence 456777775 6899999999999999999998744
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.20 E-value=0.079 Score=48.03 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=86.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCCcc
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYIS-SDG-CWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMR 115 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~~~ 115 (449)
..+.|...|+||.|++++++|...|+||.+-.+. |.+ |..--++.|... +...+.|++.|...... .
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidV----i 98 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEV----V 98 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTE----E
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCce----E
Confidence 5799999999999999999999999999988886 544 776667777532 23667888888765321 1
Q ss_pred ee-eccC------CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHH
Q 013090 116 SV-GVKQ------SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSV 188 (449)
Q Consensus 116 ~V-~~~~------~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~ 188 (449)
.| ++.. ..+...+.|.+... -.+|.++...++.+|.+..-. .-++.++. . +++.+.
T Consensus 99 kV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~~~------s~~iE~tG----~----~~ki~a 161 (193)
T 2fgc_A 99 KVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVSRE------GAIIEITG----A----RSKVEA 161 (193)
T ss_dssp EEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEECSS------EEEEEEEE----C----HHHHHH
T ss_pred EEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEcCC------EEEEEEcC----C----HHHHHH
Confidence 11 1111 12345677777543 788888888888888776311 23455554 2 567666
Q ss_pred HHHHh
Q 013090 189 IKELL 193 (449)
Q Consensus 189 l~~~L 193 (449)
+.+.|
T Consensus 162 ~i~~l 166 (193)
T 2fgc_A 162 FINLL 166 (193)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 66544
No 36
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.15 E-value=0.018 Score=50.82 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=45.4
Q ss_pred EEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEeeCCCCCCCCCHHHHHHHHHHhcc
Q 013090 127 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 195 (449)
Q Consensus 127 ~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (449)
.|+|.|.||+|+|++|+.+|+.+++||....+.+.| . +++.-+ ..+.+.+..+...+..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g-~----i~~~~~-----~~~~~~~~~L~~~l~~ 60 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-R----IYLNFA-----ELEFESFSSLMAEIRR 60 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT-E----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC-E----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence 488999999999999999999999999999998763 2 555542 1124566777766655
No 37
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=96.11 E-value=0.015 Score=52.34 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=72.7
Q ss_pred CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE-ec--CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090 36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYIS-SD--GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~-t~--~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~ 111 (449)
+.+.|+|. .+|+||.++++..+|+++|+||.--... +. .|..--.|.|...+-.. ..+.++.+.+.+.
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~------ 86 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIG------ 86 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHC------
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcC------
Confidence 44566654 7899999999999999999999744432 22 56666678885432111 0111222222221
Q ss_pred CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEE
Q 013090 112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
-..+.. ..+...|.|+|. +.||+.+++..+|++.|+||....
T Consensus 87 --~~~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 87 --FSQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp --CSEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred --cceEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 011222 245677888876 799999999999999999998876
No 38
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=95.89 E-value=0.0091 Score=52.73 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=33.1
Q ss_pred EEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC
Q 013090 339 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 374 (449)
Q Consensus 339 ~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g 374 (449)
.|+|.|.||+|+|++|+++|.++++||..+.+.+.|
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 589999999999999999999999999999986653
No 39
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=95.82 E-value=0.038 Score=50.18 Aligned_cols=67 Identities=12% Similarity=0.274 Sum_probs=50.8
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEE-ccC-CceEEEEEEeeCCCCCCCCCHHHHHHHHHHhccccc
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 198 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~-T~~-~~~~dvf~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 198 (449)
....|+|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|... ...++.|..+|.++..
T Consensus 28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence 356899999999999999999999999999998886 444 344456666541 2456778888776543
No 40
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=95.78 E-value=0.012 Score=54.26 Aligned_cols=49 Identities=10% Similarity=0.302 Sum_probs=36.5
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-----CceEEEEEEee
Q 013090 125 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-----TRAAALMQVTD 173 (449)
Q Consensus 125 ~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-----~~~~dvf~V~~ 173 (449)
...|.+.+.||||+|++|+.+|+++++||......+.. +.+.-.+.+.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d 57 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 57 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence 56799999999999999999999999999999999853 34554455543
No 41
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=95.30 E-value=0.1 Score=53.14 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=71.7
Q ss_pred CeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccccccc
Q 013090 36 NATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYISSD---GCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 36 ~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~ 111 (449)
+.+.|+|. .+|+||.++++.+.|+++|+||.--...|. +|...-.|.|...+. +...+.|++ +...+.+
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~- 335 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW- 335 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence 33466676 689999999999999999999986544432 454455677754211 112233332 2221110
Q ss_pred CCcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEE
Q 013090 112 SSMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSA 156 (449)
Q Consensus 112 ~~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A 156 (449)
..+.. ..+...+.|+|. +.||.++++..+|++.|+||..-
T Consensus 336 ---~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 378 (421)
T 3ab4_A 336 ---TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI 378 (421)
T ss_dssp ---SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred ---ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence 11222 245677888886 78999999999999999999843
No 42
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=95.12 E-value=0.12 Score=46.34 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=80.1
Q ss_pred ceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 258 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 258 ~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
+.+.|+|. .+|+||.++++...|++.|+||..-..... .+..-=.|.|... +..+..++.+.+...+.-
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~------~~~~a~~~L~~~~~el~~~ 88 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGFS 88 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT------THHHHHHHHHHTHHHHCCS
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh------HHHHHHHHHHHHHHhcCcc
Confidence 34455543 579999999999999999999976543222 2333345666321 111222222223333320
Q ss_pred c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
. .+.-..+.+.+. ++||+.+++.++|.+.||||.... |- ...=.|.|...+ ....+.+|.++|..
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~~d----~~~Av~aLH~~f~l 159 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTE----LDKAVVALHEAFGL 159 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHHHTC
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeHHH----HHHHHHHHHHHHcC
Confidence 0 123478888875 899999999999999999998876 22 223355663221 12234566666543
No 43
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=94.72 E-value=0.099 Score=47.82 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=82.2
Q ss_pred CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090 257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 332 (449)
Q Consensus 257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~ 332 (449)
++.+.|+|. .+|+||+.+++-..|++.|+||..-..+.. .+...-.|.+... +..+...+.+.+...+..
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~------d~~~~~~~l~~~~~~~~~ 106 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGF 106 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG------GHHHHHHHHHTTHHHHCC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh------hHHHHHHHHHHHHhhhce
Confidence 345666665 589999999999999999999987544322 2344344555221 111222232333333321
Q ss_pred c----cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 333 R----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 333 r----~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
. .+.-.++.+.+. .+||+.+++-.+|.+.||||.-.. |- .-.=.|.|...+ ....+.+|-++|+.
T Consensus 107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS--Ei~IS~vV~~~d----~~~Av~aLH~~F~L 178 (200)
T 4go7_X 107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTE----LDKAVVALHEAFGL 178 (200)
T ss_dssp SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGG----HHHHHHHHHHHHTC
T ss_pred eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc--CCEEEEEEeHHH----HHHHHHHHHHHhCC
Confidence 1 122467888874 789999999999999999998875 21 223356663221 12235666666653
No 44
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=94.65 E-value=0.055 Score=49.53 Aligned_cols=111 Identities=11% Similarity=0.130 Sum_probs=70.9
Q ss_pred CCeEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc
Q 013090 35 KNATVIRVD-SANKHGILLEVVQVLTDLNLIVTKAYISS---DGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF 110 (449)
Q Consensus 35 ~~~t~V~V~-~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~ 110 (449)
.+.+.|+|. .+|+||..+++-+.|++.|+||---.... .++.....|.+...+. +...+.|.+...
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~---------~~~~~~l~~~~~- 102 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG---------PAAVEKLDSLRN- 102 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH---------HHHHHHHHTTHH-
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH---------HHHHHHHHHHHh-
Confidence 355677776 69999999999999999999998543321 3456666788854211 222222322210
Q ss_pred cCCcceeeccCCCceEEEEEEe---CCccchHHHHHHHHHhCCCeEEEEE
Q 013090 111 ASSMRSVGVKQSMDHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 111 ~~~~~~V~~~~~~~~t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
......+.. ..+...|.++| ...||+.+++..+|++.|+||..-.
T Consensus 103 ~~~~~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs 150 (200)
T 4go7_X 103 EIGFSQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 150 (200)
T ss_dssp HHCCSEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred hhceeeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence 000111222 23345566664 5689999999999999999998764
No 45
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=94.37 E-value=0.23 Score=50.52 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=81.4
Q ss_pred CceeEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh
Q 013090 257 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 332 (449)
Q Consensus 257 ~~~tvv~V~-~~DrpgLl~~i~~~L~~~gl~I~~A~i~t~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~ 332 (449)
++.+.|+|. .+|+||.++++...|++.|+||..-...+. .+...=.|.| +. ++..+..++.+.+...+..
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v-~~-----~~~~~a~~~l~~~~~~~~~ 335 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTC-PR-----SDGRRAMEILKKLQVQGNW 335 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEE-ET-----TTHHHHHHHHHHHHTTTTC
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEE-ec-----hhHHHHHHHHHHHHHHcCC
Confidence 355678887 589999999999999999999988655443 2223234666 32 1212222222222222221
Q ss_pred -c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 333 -R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 333 -r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
. ...-..+.|.+. ++||+++++..+|.+.||||.... |. ...-.|.|...+ ....+..|.++|..
T Consensus 336 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S--e~~is~vV~~~d----~~~Av~~Lh~~f~~ 407 (421)
T 3ab4_A 336 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TS--EIRISVLIREDD----LDAAARALHEQFQL 407 (421)
T ss_dssp SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGG----HHHHHHHHHHHTTC
T ss_pred ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeHHH----HHHHHHHHHHHHhc
Confidence 0 112356888885 799999999999999999998543 32 123355553221 12234566666653
No 46
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=94.34 E-value=0.077 Score=48.92 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEE
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSD-----GCWFMDVFNVT 84 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~-----~g~~~d~F~V~ 84 (449)
..+.|.+.||||+|++++.+|++++.||...+..+. ++.+.-.+.|.
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~ 56 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE 56 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence 568899999999999999999999999999999874 56766555554
No 47
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=94.17 E-value=0.13 Score=49.60 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=64.4
Q ss_pred hCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEeCCCcChHHHHHHHHH
Q 013090 282 DMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV-SEGLKLELCTTDRVGLLSNVTRIFR 359 (449)
Q Consensus 282 ~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~-~~~~~l~v~~~DrpGLL~~it~~l~ 359 (449)
..|+.|..-.|... ++.. .|+|......+..+ .+. ...+. ...+.|-+...|+||-|+++-..|+
T Consensus 156 ~ygL~il~~~I~D~~~N~T--RF~vl~~~~~~~~~-----~~~------~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa 222 (283)
T 2qmx_A 156 LYGLDILKENLADEEWNIT--RFFCIAHENNPDIS-----HLK------VRPDVARQKTSIVFALPNEQGSLFRALATFA 222 (283)
T ss_dssp HTTCEEEESSCSSCCCCEE--EEEEEEETTCCCCT-----TSS------SCCEEEEEEEEEEEEEECCTTHHHHHHHHHH
T ss_pred HcCCceecccCcCCCCCee--eEEEEecCcccccc-----ccc------cCCCCCCceEEEEEEcCCCCchHHHHHHHHH
Confidence 35788877666555 3343 48887654332100 000 00000 1245666666799999999999999
Q ss_pred hCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHH
Q 013090 360 ENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 360 ~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~ 394 (449)
.+|||+++.+....+.+ .+=+||| |..|.+-++.
T Consensus 223 ~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d~~ 257 (283)
T 2qmx_A 223 LRGIDLTKIESRPSRKKAFEYLFYA-DFIGHREDQN 257 (283)
T ss_dssp TTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTSHH
T ss_pred HcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCcHH
Confidence 99999999998766544 6668988 6778666655
No 48
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.10 E-value=0.11 Score=50.71 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=66.1
Q ss_pred hCC-ceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-CCcChHHHHHHHH
Q 013090 282 DMQ-YVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-DRVGLLSNVTRIF 358 (449)
Q Consensus 282 ~~g-l~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~-DrpGLL~~it~~l 358 (449)
-.| +.|..-.|... ++.. .|+|.......... .....+.|-+... |+||-|+++-..|
T Consensus 163 ~Yg~L~il~~~I~D~~~N~T--RFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F 223 (313)
T 3mwb_A 163 EQPGLNVLAEDIGDNPDAVT--RFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF 223 (313)
T ss_dssp HCTTCEEEESCCCSCTTCEE--EEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred HcCChhhhhhcccCCCccee--EEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 456 88888777655 3444 48887654321110 0112466777775 9999999999999
Q ss_pred HhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHH
Q 013090 359 RENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSI 399 (449)
Q Consensus 359 ~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~l 399 (449)
+.+|||+.+.+-.....+ .+=+||| |..|..-++...++|
T Consensus 224 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~aL 264 (313)
T 3mwb_A 224 ASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDSRVADAL 264 (313)
T ss_dssp HTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSHHHHHHH
T ss_pred HHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcHHHHHHH
Confidence 999999999998765444 5668888 667766565533333
No 49
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=93.74 E-value=0.25 Score=48.54 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=45.8
Q ss_pred eEEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCc-eeeEEEEEcCCCCCCCHHHHHHHH
Q 013090 338 LKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIR 400 (449)
Q Consensus 338 ~~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~-~~d~F~v~~~~g~p~~~~~~~~lr 400 (449)
+.+-+... |+||-|+++-..|+.+|||+++.+......+ .+=+||| |..|.+-++...++|+
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~AL~ 271 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEERFRDALV 271 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSHHHHHHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCHHHHHHHH
Confidence 33444444 7999999999999999999999998766555 5558888 6778766666334443
No 50
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=93.46 E-value=0.46 Score=49.11 Aligned_cols=131 Identities=8% Similarity=0.153 Sum_probs=83.4
Q ss_pred CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH---
Q 013090 257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI--- 330 (449)
Q Consensus 257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l--- 330 (449)
++.+.|.|.+ .++||+++++..+|++.|++|..-...+.... =+|+|... ..++..+.|.+.+
T Consensus 316 ~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~--Is~~V~~~---------d~~~a~~~L~~~l~~~ 384 (473)
T 3c1m_A 316 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETN--ISLVVSEE---------DVDKALKALKREFGDF 384 (473)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCC--EEEEEEGG---------GHHHHHHHHHHHHCC-
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCE--EEEEEech---------HHHHHHHHHHHHHhhh
Confidence 3567888886 68899999999999999999988665343322 23666321 1234455555555
Q ss_pred -----hhc--c------CCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEEcCCCCCCCH
Q 013090 331 -----ERR--V------SEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVGGASGYPVDA 393 (449)
Q Consensus 331 -----~~r--~------~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~~~~g~p~~~ 393 (449)
... . +.-..+.|.+. ++||+++++..+|.+.||||.-. ++|..... .|.|. ... ..
T Consensus 385 ~~~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~mi---sqgtSe~~Is~vV~-~~d---~~ 457 (473)
T 3c1m_A 385 GKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMI---AQGSSEVNISFVID-EKD---LL 457 (473)
T ss_dssp ---CTTSCCCEEEEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEE---EESSCSSEEEEEEE-GGG---HH
T ss_pred cccccccccccceEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEE---ecCCCCceEEEEEc-HHH---HH
Confidence 211 0 11245788885 58999999999999999999433 35555444 55553 211 12
Q ss_pred HHHHHHHHHhcc
Q 013090 394 KIIDSIRQSIGQ 405 (449)
Q Consensus 394 ~~~~~lr~~l~~ 405 (449)
..+..|.++|..
T Consensus 458 ~Av~aLh~~f~~ 469 (473)
T 3c1m_A 458 NCVRKLHEKFIE 469 (473)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 234566665543
No 51
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=92.87 E-value=0.35 Score=50.70 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=50.4
Q ss_pred CCceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHH
Q 013090 335 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQ 401 (449)
Q Consensus 335 ~~~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~ 401 (449)
+.++.|-+.-.|+||.+..|+.+|.++||||...++....+..+-+..+. ...+++.+.+++|++
T Consensus 452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~--vd~~~~~~~l~~l~~ 516 (529)
T 1ygy_A 452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR--LDQDVPDDVRTAIAA 516 (529)
T ss_dssp SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE--ESSCCCHHHHHHHHH
T ss_pred CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE--ECCCCCHHHHHHHhc
Confidence 45688899999999999999999999999999999976543334444442 244778887777776
No 52
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=92.48 E-value=0.4 Score=45.71 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=61.9
Q ss_pred hCCceEEEEEEEec-CCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEe---CCCcChHHHHHHH
Q 013090 282 DMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT---TDRVGLLSNVTRI 357 (449)
Q Consensus 282 ~~gl~I~~A~i~t~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~---~DrpGLL~~it~~ 357 (449)
..|+.|..-.|... ++.. .|+|..... + .. ...+.|-+.. .|+||-|+++-..
T Consensus 153 ~ygL~il~~~I~D~~~N~T--RF~vl~~~~-~-------------------~~-~~ktsl~f~~~~~~~~pGaL~~~L~~ 209 (267)
T 2qmw_A 153 AYGFTPIDTHIEDYPHNVT--RFLVIKNQQ-Q-------------------FD-QNATSLMFLITPMHDKPGLLASVLNT 209 (267)
T ss_dssp GGTCCEEEECCCSCSCCEE--EEEEEESCC-C-------------------CC-SSCSEEEEEEEESSCCTTHHHHHHHH
T ss_pred HCCCcEeeccccCCCCCce--EEEEEecCC-C-------------------CC-CCeEEEEEEcCCCCCCcChHHHHHHH
Confidence 34788888777665 3444 488875433 1 01 2345676777 8999999999999
Q ss_pred HHhCCCcEEEEEEeecCC-ceeeEEEEEcCCCCCCCHH
Q 013090 358 FRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAK 394 (449)
Q Consensus 358 l~~~~i~I~~a~i~T~g~-~~~d~F~v~~~~g~p~~~~ 394 (449)
|+.+|||+++.+...... ..+=.|||. .. .+-++.
T Consensus 210 Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~e-~~~d~~ 245 (267)
T 2qmw_A 210 FALFNINLSWIESRPLKTQLGMYRFFVQ-AD-SAITTD 245 (267)
T ss_dssp HHTTTCCEEEEEEEECSSSTTCEEEEEE-ES-CCSCHH
T ss_pred HHHcCCCeeEEEEeecCCCCccEEEEEE-Ee-cCCcHH
Confidence 999999999999876654 467799994 44 444444
No 53
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=91.77 E-value=0.27 Score=49.75 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 383 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v 383 (449)
...|-+.-.|+||.+..|+.+|.++||||......+.|+.|--++.+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 35788888999999999999999999999999999977777666666
No 54
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=91.64 E-value=0.99 Score=46.56 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=70.8
Q ss_pred CeEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHh--------
Q 013090 36 NATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCL-------- 104 (449)
Q Consensus 36 ~~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L-------- 104 (449)
+.+.|+|.+ +++||.++++..+|+++|+||.--...+.. .--.|.|...+ .++..+.|++.+
T Consensus 317 ~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d-----~~~a~~~L~~~l~~~~~~~~ 389 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED-----VDKALKALKREFGDFGKKSF 389 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG-----HHHHHHHHHHHHCC----CT
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH-----HHHHHHHHHHHHhhhccccc
Confidence 445677775 688899999999999999999865543322 22357775422 134556666666
Q ss_pred cccccccCCcceeeccCCCceEEEEEEeCC---ccchHHHHHHHHHhCCCeEE
Q 013090 105 GPEACFASSMRSVGVKQSMDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVV 154 (449)
Q Consensus 105 ~~~~~~~~~~~~V~~~~~~~~t~i~v~~~D---rpGLl~~I~~~l~~~g~~I~ 154 (449)
..... -..+.. ..+...+.|+|.. .||.++++..+|++.|+||.
T Consensus 390 ~~~~~----~~~v~~--~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~ 436 (473)
T 3c1m_A 390 LNNNL----IRDVSV--DKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIK 436 (473)
T ss_dssp TSCCC----EEEEEE--EEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCC
T ss_pred ccccc----cceEEE--eCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEE
Confidence 21100 001221 2346678888864 89999999999999999993
No 55
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=89.94 E-value=2.7 Score=43.00 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=75.1
Q ss_pred CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013090 257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 332 (449)
Q Consensus 257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~- 332 (449)
++.+.|+|.+ ++.||.++++...|++.|++|..- .+.... =.|.|...+-.. ..+.+.+.|...+..
T Consensus 296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~~--is~~V~~~d~~~-----~~~~~~~el~~~~~~~ 366 (446)
T 3tvi_A 296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVDS--VSLVIEDCKLDG-----KCDKIIEEIKKQCNPD 366 (446)
T ss_dssp EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETTE--EEEEEEHHHHTT-----THHHHHHHHHHHSCCS
T ss_pred CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCCE--EEEEEecchHHH-----HHHHHHHHHHHhcCCC
Confidence 3457888886 689999999999999999999763 222221 236663321110 123444444443321
Q ss_pred c---cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEE
Q 013090 333 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVG 384 (449)
Q Consensus 333 r---~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~ 384 (449)
. ...-..+.+++. .+||+.+++..+|.+.||||.... +|..... .|.|.
T Consensus 367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV~ 422 (446)
T 3tvi_A 367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGVE 422 (446)
T ss_dssp EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEEE
T ss_pred cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEEc
Confidence 0 012367888875 589999999999999999998765 5544343 55553
No 56
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=89.66 E-value=1.2 Score=46.53 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=50.4
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEc--cCCceEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKE 191 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T--~~~~~~dvf~V~~~~~g~~i~~~~~~~~l~~ 191 (449)
......|.+.-+|+||.+.+|+..|.++|+||...++.. .++.+.-++.+.++ ++ ++.+++|++
T Consensus 451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~~-~~~l~~l~~ 516 (529)
T 1ygy_A 451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----VP-DDVRTAIAA 516 (529)
T ss_dssp ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----CC-HHHHHHHHH
T ss_pred cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----CC-HHHHHHHhc
Confidence 345677888999999999999999999999999999986 35667777777652 32 456666654
No 57
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=88.45 E-value=1.1 Score=45.85 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=69.1
Q ss_pred eEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090 37 ATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS 113 (449)
Q Consensus 37 ~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~ 113 (449)
.+.|+|.+ ++.||.++++..+|+++|++|.-- .+... --.|.|...+-.. ....+++.+++.+..
T Consensus 298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~~------- 365 (446)
T 3tvi_A 298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCNP------- 365 (446)
T ss_dssp EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHTT-THHHHHHHHHHHSCC-------
T ss_pred EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHHH-HHHHHHHHHHHhcCC-------
Confidence 44677775 689999999999999999999732 22221 2246675432211 011233333333221
Q ss_pred cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEc
Q 013090 114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWT 160 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T 160 (449)
..|.. ..+...|.|+|. ..||+.+++..+|++.|+||....-.|
T Consensus 366 -~~v~v--~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgt 412 (446)
T 3tvi_A 366 -DSIEI--HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGS 412 (446)
T ss_dssp -SEEEE--EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECS
T ss_pred -CcEEE--eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecC
Confidence 11221 234678889886 489999999999999999998765333
No 58
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=88.27 E-value=1.3 Score=44.72 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=44.1
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVT 84 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~ 84 (449)
+...+.+.-.|+||.+..+..+|.++|+||...++.+.++.++-++-|.
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD 378 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE 378 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence 4557888899999999999999999999999999999999998887774
No 59
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=86.76 E-value=0.95 Score=45.91 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013090 35 KNATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNV 83 (449)
Q Consensus 35 ~~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V 83 (449)
.+...|.+.-+|.||.+.+|..+|+++|+||..-...|.++++.-+.-|
T Consensus 341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~ 389 (416)
T 3k5p_A 341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA 389 (416)
T ss_dssp SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence 3568999999999999999999999999999988888999888555444
No 60
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=83.74 E-value=4.1 Score=42.38 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=70.6
Q ss_pred CeEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCC-ChHHHHHHHHHhccccccc
Q 013090 36 NATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKIT-DEGILDYIRKCLGPEACFA 111 (449)
Q Consensus 36 ~~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~-~~~~~~~I~~~L~~~~~~~ 111 (449)
+.+.|+|.+ .+++|.++++-.+|+++|++|.--. ++... -.|.|...+..... ..+.++.+.+.|....
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~--- 412 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIA--- 412 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence 445677774 6789999999999999999998542 22222 23566432211110 1234455555554311
Q ss_pred CCcceeeccCCCceEEEEEEeC--CccchHHHHHHHHHhCCCeEEEEE
Q 013090 112 SSMRSVGVKQSMDHTAIELTGS--DRPGLLSEVSAVLTHLKCNVVSAE 157 (449)
Q Consensus 112 ~~~~~V~~~~~~~~t~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~ 157 (449)
.+.. ..+...|.|+|. ..||+.+++..+|++.|+||..-.
T Consensus 413 ----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs 454 (510)
T 2cdq_A 413 ----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS 454 (510)
T ss_dssp ----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred ----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE
Confidence 1222 234667888887 788999999999999999997653
No 61
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=83.36 E-value=0.93 Score=46.40 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=29.8
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEE
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAE 369 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~ 369 (449)
.|-|.+...|+||.|++|+.+|.++||+|.+..
T Consensus 359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 359 AYYLRLRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 488999999999999999999999999999875
No 62
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=83.06 E-value=5.8 Score=40.10 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=44.9
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEe
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 172 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~ 172 (449)
.....|.+.-.|+||.|.+|..+|+++|+||..-...|.++.+.-+.-|.
T Consensus 341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~ 390 (416)
T 3k5p_A 341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD 390 (416)
T ss_dssp SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence 45689999999999999999999999999999999999998877766665
No 63
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=80.08 E-value=2.6 Score=36.35 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred ceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc-
Q 013090 258 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR- 333 (449)
Q Consensus 258 ~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r- 333 (449)
+.+.|+|.+ +++||..+++...|++.|++|..-. +.... =.|+|.+. . .++++.+.|.+.-.-.
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~~--Isf~v~~~--~------~~~~il~~l~~~~~v~~ 84 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEVG--VSLTIDND--K------NLPDIVRALSDIGDVTV 84 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSSE--EEEEESCC--T------THHHHHHHHTTTEEEEE
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCCE--EEEEECCh--H------HHHHHHHHHhccCeEEE
Confidence 456777774 5789999999999999999986633 32222 23666321 1 1233333332210000
Q ss_pred cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 334 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 334 ~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
...-..+.+.+. ++||+.+++..+|. |++|.... +|....+ .|.|...+ ....+..|.++|..
T Consensus 85 ~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is---qg~Se~~is~vv~~~d----~~~a~~~Lh~~f~~ 151 (157)
T 3mah_A 85 DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS---YGGSNYNVSVLVKAED----KKKALIALSNKLFN 151 (157)
T ss_dssp EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE---ECSSSSCEEEEEEGGG----HHHHHHHHHHHHHC
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe---eCCCCCEEEEEEcHHH----HHHHHHHHHHHHhc
Confidence 012367777775 68999999999999 88887654 5544334 56663221 12234555565543
No 64
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=80.01 E-value=2 Score=37.17 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=67.6
Q ss_pred CeEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccC
Q 013090 36 NATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFAS 112 (449)
Q Consensus 36 ~~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~ 112 (449)
+.+.|+|.+ +++||..+++...|+++|+||.--. +... --.|.|.+.+ ....+.+.|...
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~~----- 79 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSDI----- 79 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTTT-----
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhcc-----
Confidence 456788774 5789999999999999999996322 2222 2346664321 123333334321
Q ss_pred CcceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 113 SMRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 113 ~~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
..+.. ..+...|.+.|. ++||+.+++..+|+ |+||....-.|.. .--.|.|..
T Consensus 80 --~~v~~--~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se--~~is~vv~~ 135 (157)
T 3mah_A 80 --GDVTV--DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSN--YNVSVLVKA 135 (157)
T ss_dssp --EEEEE--EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSS--SCEEEEEEG
T ss_pred --CeEEE--eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCC--CEEEEEEcH
Confidence 11221 234677888876 58999999999999 9998775433322 234455553
No 65
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=78.26 E-value=7.9 Score=40.18 Aligned_cols=119 Identities=12% Similarity=0.140 Sum_probs=75.5
Q ss_pred CceeEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHhh
Q 013090 257 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK-SDAERERVIQCLKAAIER 332 (449)
Q Consensus 257 ~~~tvv~V~~---~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~-~~~~~~~l~~~L~~~l~~ 332 (449)
++.+.|+|.+ .++||.++++...|++.|++|..- .+..... +|.|...+-.... ....++.+.+.|.. + .
T Consensus 339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~si--s~~v~~~~~~~~~~~~~~l~~~~~el~~-~-~ 412 (510)
T 2cdq_A 339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVSI--SLTLDPSKLWSRELIQQELDHVVEELEK-I-A 412 (510)
T ss_dssp EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTEE--EEEECCGGGSSSCCCHHHHHHHHHHHTT-T-S
T ss_pred CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCeE--EEEEechHhhhhhHHHHHHHHHHHHhCC-C-C
Confidence 3567889985 789999999999999999999986 2322222 3666322211111 11122333222221 0 0
Q ss_pred c---cCCceEEEEEeC--CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEE
Q 013090 333 R---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVG 384 (449)
Q Consensus 333 r---~~~~~~l~v~~~--DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~ 384 (449)
. ...-..+.+++. .+||+.+++..+|.+.||||.-.. +|....+ .|.|.
T Consensus 413 ~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV~ 467 (510)
T 2cdq_A 413 VVNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIVN 467 (510)
T ss_dssp EEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEEE
T ss_pred eEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEEe
Confidence 1 012367888887 778999999999999999998765 6655444 56663
No 66
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=76.51 E-value=9.9 Score=36.32 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=42.6
Q ss_pred ceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEeeCCCCC
Q 013090 124 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGG 178 (449)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~~~~g~ 178 (449)
..|.|.+.-+|+||-|+++-..|+.+|+|+.+-+..-.. +...=.|||.- .|.
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~ 252 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGH 252 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESC
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecC
Confidence 356777777899999999999999999999998887644 44567888875 355
No 67
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=75.42 E-value=15 Score=35.88 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=39.0
Q ss_pred eEEEEEEeC--CccchHHHHHHHHHhCCCeEEEEEEEccCCc-eEEEEEEeeCCCCC
Q 013090 125 HTAIELTGS--DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTR-AAALMQVTDEETGG 178 (449)
Q Consensus 125 ~t~i~v~~~--DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~-~~dvf~V~~~~~g~ 178 (449)
.+.+.+..+ |+||-|+++-..|+.+|+|+.+-+..-..++ ..=+|||.- .|.
T Consensus 206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~ 260 (329)
T 3luy_A 206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAA 260 (329)
T ss_dssp EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSC
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCC
Confidence 344544544 7999999999999999999998887764444 456777764 465
No 68
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=73.42 E-value=4.9 Score=40.62 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCcChHHHHHHHHHhCCCcEEEEEEeecC-CceeeEEEEEcCC
Q 013090 337 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGAS 387 (449)
Q Consensus 337 ~~~l~v~~~DrpGLL~~it~~l~~~~i~I~~a~i~T~g-~~~~d~F~v~~~~ 387 (449)
.+.|-+...|+||-|+++-..|+.+|||+++.+..... ...+=.|+| |..
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e 84 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD 84 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe
Confidence 46777777899999999999999999999999987654 446668998 444
No 69
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=72.18 E-value=15 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=41.8
Q ss_pred ceEEEEEEeC-CccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEeeCCCCC
Q 013090 124 DHTAIELTGS-DRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGG 178 (449)
Q Consensus 124 ~~t~i~v~~~-DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~~~~g~ 178 (449)
..|.|.+..+ |+||-|+++-..|+.+|+|+.+-+..-. ++...=.|||.- .|.
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~ 254 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA--DGH 254 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE--ESC
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE--eCC
Confidence 4677778876 9999999999999999999998887753 334456788874 355
No 70
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=70.89 E-value=18 Score=34.24 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=41.0
Q ss_pred CceEEEEEEe---CCccchHHHHHHHHHhCCCeEEEEEEEccC-CceEEEEEEee
Q 013090 123 MDHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 173 (449)
Q Consensus 123 ~~~t~i~v~~---~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~-~~~~dvf~V~~ 173 (449)
...|.|.+.. +|+||-|+++-..|+.+|+|+.+-+..-.. +...=.|||.-
T Consensus 184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 3456677777 899999999999999999999998887644 34567788875
No 71
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=66.67 E-value=9.4 Score=38.89 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc--CCceEEEEEEee
Q 013090 122 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTD 173 (449)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~--~~~~~dvf~V~~ 173 (449)
....+-+.+...|+||.|++|+++|.++|++|.+..-.-. ++....+..+|.
T Consensus 356 ~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th 409 (444)
T 3mtj_A 356 VRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH 409 (444)
T ss_dssp CEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred cceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence 3455678889999999999999999999999988654322 122356667775
No 72
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=58.03 E-value=49 Score=28.68 Aligned_cols=85 Identities=8% Similarity=0.114 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhh----ccCCceEEEEEeC-
Q 013090 272 LVFDTVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----RVSEGLKLELCTT- 345 (449)
Q Consensus 272 Ll~~i~~~L~~~gl~I~~A~i~t~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~----r~~~~~~l~v~~~- 345 (449)
+..-+..++.. |+.+.+..+...|+ ..+.+ || |.+|. + +-+..+.+.+.|.+.|.+ ..+..|.|||+++
T Consensus 14 v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV-~I-D~~~g-i-~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPG 88 (164)
T 1ib8_A 14 VREVVEPVIEA-PFELVDIEYGKIGSDMILSI-FV-DKPEG-I-TLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPG 88 (164)
T ss_dssp HHHHHHHHHCS-SSEEEEEEEEEETTEEEEEE-EE-ECSSC-C-CHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCS
T ss_pred HHHHHHHHHcC-CcEEEEEEEEecCCCcEEEE-EE-ECCCC-C-CHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCC
Confidence 44445566667 99999999988764 45444 45 44332 3 235778888888888872 2457899999975
Q ss_pred -CCcChHHHHHHHHHhCCC
Q 013090 346 -DRVGLLSNVTRIFRENSL 363 (449)
Q Consensus 346 -DrpGLL~~it~~l~~~~i 363 (449)
||| |..-..+-+-.|=
T Consensus 89 ldRp--L~~~~df~r~~G~ 105 (164)
T 1ib8_A 89 LERP--LKTKDAVAGAVGK 105 (164)
T ss_dssp SSSC--CSSHHHHHHHCSE
T ss_pred CCCC--CCCHHHHHHhCCc
Confidence 777 4444444455553
No 73
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=48.19 E-value=51 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.069 Sum_probs=36.3
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhCCce-EEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013090 36 NATVIRVDSANKHGILLEVVQVLTDLNLI-VTKAYISSDGCWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 36 ~~t~V~V~~~Dr~GLl~~i~~vL~~~gl~-I~~A~I~t~~g~~~d~F~V~~~~g~~~ 91 (449)
+.+.+.+.+.| +..+...|.++|.. +...-.....|+. |++.||+|+.+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~DPdGn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLDPDGHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEECTTCCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEECCCCCEE
Confidence 45667888887 78888999999999 7654333444443 89999999964
No 74
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=39.66 E-value=27 Score=35.20 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=40.6
Q ss_pred CceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEcc-CCceEEEEEEee
Q 013090 123 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 173 (449)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~-~~~~~dvf~V~~ 173 (449)
...|.|.+..+|+||-|+++-.+|+.+|+|+..-+..-. ++...=.|||.-
T Consensus 32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~ 83 (429)
T 1phz_A 32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL 83 (429)
T ss_dssp SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEE
Confidence 456777777899999999999999999999987776653 344567788764
No 75
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=38.01 E-value=1.5e+02 Score=23.84 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhC---CceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhccc
Q 013090 37 ATVIRVDSANKHGILLEVVQVLTDL---NLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPE 107 (449)
Q Consensus 37 ~t~V~V~~~Dr~GLl~~i~~vL~~~---gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~ 107 (449)
...++|.+++.+++...|..++..+ +..+ ..+-++.|.|.--.+.|. +.+++.++.|-++|...
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~------v~S~eQv~aiY~~L~~~ 102 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITIN------ATHIEQVETLYEELGKI 102 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEEC------CSSHHHHHHHHHHHSCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhcC
Confidence 4789999999999999999999998 7887 445566777876666653 35566788888888754
No 76
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=34.47 E-value=98 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=35.1
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCce-EEEEEEEecCCeeEEEEEEEecCCCCC
Q 013090 258 DYSVVTITSKDRPKLVFDTVCTLTDMQYV-VFHANIDAEGPEAYQEYFIRHIDGSPV 313 (449)
Q Consensus 258 ~~tvv~V~~~DrpgLl~~i~~~L~~~gl~-I~~A~i~t~g~~a~d~F~V~~~~g~~l 313 (449)
+++.+.+.+.| +..+...|.+.|+. +...-.....+.. |++.|++|..+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~DPdGn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLDPDGHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEECTTCCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEECCCCCEE
Confidence 44667778888 88888999999999 7654333333322 78899999864
No 77
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=31.51 E-value=37 Score=34.46 Aligned_cols=119 Identities=10% Similarity=0.079 Sum_probs=72.3
Q ss_pred CceeEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 013090 257 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR 333 (449)
Q Consensus 257 ~~~tvv~V~~~---DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r 333 (449)
++.+.|+|.+. +.||.+.++...|++.|++|..-. +.... =+|.|...+...-.....++++...|...-.-.
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~--ss~~s--is~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~ 381 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSEVS--VALTLDTTGSTSTGDTLLTQSLLMELSALCRVE 381 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE--EETTE--EEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEE
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEE--eCCCe--EEEEEeccccchhhHHHHHHHHHHHhccCCeEE
Confidence 35678888874 778999999999999999998754 32221 236663322211001013345555555311100
Q ss_pred -cCCceEEEEEeC---CCcChHHHHHHHHHhCCCcEEEEEEeecCCceee-EEEEE
Q 013090 334 -VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVG 384 (449)
Q Consensus 334 -~~~~~~l~v~~~---DrpGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d-~F~v~ 384 (449)
.+.-..+.+++. ..||+.+++..+|.+ +||.-. ++|....+ .|.|.
T Consensus 382 ~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mI---sqg~Se~~Is~vV~ 432 (449)
T 2j0w_A 382 VEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMI---CYGASSHNLCFLVP 432 (449)
T ss_dssp EEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEE---EESSCTTEEEEEEE
T ss_pred EeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEE---EecCCCcEEEEEEe
Confidence 112467888886 589999999999965 666544 36665444 55663
No 78
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=29.38 E-value=1.7e+02 Score=30.09 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=80.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccc--cCC--
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACF--ASS-- 113 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~--~~~-- 113 (449)
..+.|.-+||||-|.+++.+|. +-||.+-.=...+.....+|....-.+. ++..+.|.+.|.+.... ..+
T Consensus 339 ~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~l~~~g~~~~~~~~~ 412 (514)
T 1tdj_A 339 ALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFADAKNACIFVGVRLSRG----LEERKEILQMLNDGGYSVVDLSDD 412 (514)
T ss_dssp EEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECCCSSBCEEEEEEECSST----HHHHHHHHHHHTSSSCEEETTSSC
T ss_pred ccccccCCCCCchHHHHHHHhC--CCceEEEEeeccCCCeEEEEEEEEeCCc----HHHHHHHHHHHHhCCCCeEECCCC
Confidence 4677888999999999999998 6888765443222222233333332221 34667888888765320 011
Q ss_pred -------cceeec-cC-CCceEEEEEEeCCccchHHHHHHHHHhCCCeEEEEEEEccC---CceEEEEEEee
Q 013090 114 -------MRSVGV-KQ-SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN---TRAAALMQVTD 173 (449)
Q Consensus 114 -------~~~V~~-~~-~~~~t~i~v~~~DrpGLl~~I~~~l~~~g~~I~~A~i~T~~---~~~~dvf~V~~ 173 (449)
+..|+= .+ ..+.....+.-|.|||-|.+.-..|.. +.||.-.+-..+| |++..-|.|.+
T Consensus 413 ~~~~~h~~~~~g~~~~~~~~e~~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~~~~~~~~~~~~~~ 483 (514)
T 1tdj_A 413 EMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGTDYGRVLAAFELGD 483 (514)
T ss_dssp HHHHHTGGGTCCCCCSSCCCCEEEEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTTCSSCEEEEEC---
T ss_pred HHHHHHHHHhhCCcCccCCCceEEEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCCCcccEEEEEEcCC
Confidence 111211 11 234566888899999999999998875 6888777776666 56777777664
No 79
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=27.66 E-value=2.6e+02 Score=26.80 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=65.5
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCCCc
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRV 348 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~Drp 348 (449)
-|..+.++++.+.++|++ .+++-|--|-. .+....++.+.|.+.+ | ...|.+.+.|-.
T Consensus 167 ~~~~~~~~~~~~~~~Ga~---------------~i~l~DT~G~~--~P~~v~~lv~~l~~~~----p-~~~i~~H~Hnd~ 224 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIE---------------RIFLPDTLGVL--SPEETFQGVDSLIQKY----P-DIHFEFHGHNDY 224 (337)
T ss_dssp CHHHHHHHHHHHHTSCCS---------------EEEEECTTCCC--CHHHHHHHHHHHHHHC----T-TSCEEEECBCTT
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEEecCCCCc--CHHHHHHHHHHHHHhc----C-CCeEEEEecCCc
Confidence 577888999999999874 35566666653 3445666666666544 2 456999999999
Q ss_pred ChHHHHHHHHHhCCCcEEEEEEeecCCceee
Q 013090 349 GLLSNVTRIFRENSLTVTRAEVATKSGKAVN 379 (449)
Q Consensus 349 GLL~~it~~l~~~~i~I~~a~i~T~g~~~~d 379 (449)
|+-..=+-+--+.|+.+..+.+.-+|+++.+
T Consensus 225 GlA~AN~laAv~aGa~~vd~tv~GlG~~aGN 255 (337)
T 3ble_A 225 DLSVANSLQAIRAGVKGLHASINGLGERAGN 255 (337)
T ss_dssp SCHHHHHHHHHHTTCSEEEEBGGGCSSTTCB
T ss_pred chHHHHHHHHHHhCCCEEEEecccccccccc
Confidence 9966666666678999999999999987543
No 80
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=26.72 E-value=44 Score=28.05 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=33.1
Q ss_pred ceEEEEEEeC---CccchHHHHHHHHHhCCCeEEEEEEEccCCceEEEEEEee
Q 013090 124 DHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 173 (449)
Q Consensus 124 ~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~A~i~T~~~~~~dvf~V~~ 173 (449)
.+-.|+|.++ |-.|+++.|++.|++.|+.|.... |.. -|-.+|..
T Consensus 61 ~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iS--ty~---tD~IlVp~ 108 (134)
T 1zhv_A 61 GWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS--TFD---GDHLLVRS 108 (134)
T ss_dssp EEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE--CSS---CEEEEEEG
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEE--ecc---ccEEEEeH
Confidence 3456666655 889999999999999999987643 433 45566654
No 81
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=26.05 E-value=1.5e+02 Score=24.06 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=34.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013090 38 TVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKI 91 (449)
Q Consensus 38 t~V~V~~~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~ 91 (449)
.-+.+...| +..+...|.+.|+.|...-.....|+ .|++.||+|+.+
T Consensus 67 ~hl~f~V~d----~d~~~~~l~~~G~~v~~~p~~~~~G~---~~~~~DPdG~~i 113 (144)
T 3r6a_A 67 TQATFLVDS----LDKFKTFLEENGAEIIRGPSKVPTGR---NMTVRHSDGSVI 113 (144)
T ss_dssp CCEEEEESC----HHHHHHHHHHTTCEEEEEEEEETTEE---EEEEECTTSCEE
T ss_pred eEEEEEeCC----HHHHHHHHHHcCCEEecCCccCCCce---EEEEECCCCCEE
Confidence 345555565 66788889999999987655555553 578999999964
No 82
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=25.01 E-value=34 Score=34.68 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=62.5
Q ss_pred eEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCChHHHHHHHHHhcccccccCC
Q 013090 37 ATVIRVDS---ANKHGILLEVVQVLTDLNLIVTKAYISSDGCWFMDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASS 113 (449)
Q Consensus 37 ~t~V~V~~---~Dr~GLl~~i~~vL~~~gl~I~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~I~~~L~~~~~~~~~ 113 (449)
.+.|+|.+ .+.+|.++++-.+|+++|++|.--. +.. .--.|.|...+...-.....++.+.+.|....
T Consensus 308 ~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~--ss~--~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~----- 378 (449)
T 2j0w_A 308 QTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSE--VSVALTLDTTGSTSTGDTLLTQSLLMELSALC----- 378 (449)
T ss_dssp EEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE--EET--TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHS-----
T ss_pred EEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEE--eCC--CeEEEEEeccccchhhHHHHHHHHHHHhccCC-----
Confidence 34555654 4678999999999999999987443 222 12246665433211001113344444444211
Q ss_pred cceeeccCCCceEEEEEEeC---CccchHHHHHHHHHhCCCeEEE
Q 013090 114 MRSVGVKQSMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVS 155 (449)
Q Consensus 114 ~~~V~~~~~~~~t~i~v~~~---DrpGLl~~I~~~l~~~g~~I~~ 155 (449)
.+.. ..+...|.|+|. ..||+.+++..+|++ +||..
T Consensus 379 --~v~~--~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~m 417 (449)
T 2j0w_A 379 --RVEV--EEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRM 417 (449)
T ss_dssp --CEEE--EEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCE
T ss_pred --eEEE--eCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEE
Confidence 0121 235677899987 488999999999966 66653
No 83
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=24.93 E-value=1.9e+02 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCC
Q 013090 270 PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 310 (449)
Q Consensus 270 pgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g 310 (449)
..+++++++.+ +..+||..|.|...++..+..++| ...|
T Consensus 35 ~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v-~l~G 73 (106)
T 3dhx_A 35 APLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLT-EMHG 73 (106)
T ss_dssp CCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEE-EEES
T ss_pred hhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEE-EEeC
Confidence 34888888776 677999999999999988888887 3445
No 84
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=23.38 E-value=2.3e+02 Score=21.87 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=36.3
Q ss_pred cChHHHHHHHHHhCCCcEEEEEEeecCCceeeEEEEEcCCCCCCCHHHHHHHHHHhcc
Q 013090 348 VGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 405 (449)
Q Consensus 348 pGLL~~it~~l~~~~i~I~~a~i~T~g~~~~d~F~v~~~~g~p~~~~~~~~lr~~l~~ 405 (449)
.-+++++++.| ...+||..+.|...++.....+.+.-. |. +.+.+++..+.|.+
T Consensus 34 ~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~-G~--~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 34 EPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIP-YI--SSVDFGKFEKELIE 87 (98)
T ss_dssp HHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEES-CC--CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEe-CC--CHHHHHHHHHHHHH
Confidence 34777777777 478899999999999998888877543 31 23334444444443
No 85
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.65 E-value=2.8e+02 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.7
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCC
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 310 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g 310 (449)
...+++++++.+ +..+||.+|.|...++..+..++|.- .|
T Consensus 36 ~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l-~G 75 (100)
T 2qsw_A 36 KLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQL-LG 75 (100)
T ss_dssp SSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEE-ES
T ss_pred CchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEE-EC
Confidence 456888888877 68999999999999988888888743 35
No 86
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=20.79 E-value=3.2e+02 Score=21.78 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=43.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhC---CceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 013090 259 YSVVTITSKDRPKLVFDTVCTLTDM---QYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL 326 (449)
Q Consensus 259 ~tvv~V~~~DrpgLl~~i~~~L~~~---gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L 326 (449)
.+.+.|.+++.+++...|..++.++ ++.+ ..+-++.|.+..=++-| .+.+.+.++.|-+.|
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v------~v~S~eQv~aiY~~L 99 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITI------NATHIEQVETLYEEL 99 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEE------CCSSHHHHHHHHHHH
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEE------EECCHHHHHHHHHHH
Confidence 4688999999999999999999987 7777 44766667777544434 344444555555444
No 87
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.62 E-value=2.9e+02 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCC
Q 013090 269 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 310 (449)
Q Consensus 269 rpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g 310 (449)
...+++++++.+ +..+||.+|.|...++..+..++|.- .|
T Consensus 33 ~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l-~G 72 (98)
T 3ced_A 33 TEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHI-PY 72 (98)
T ss_dssp HHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEE-SC
T ss_pred CchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEE-eC
Confidence 356888888877 68999999999999988888888743 45
No 88
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=20.46 E-value=5.2e+02 Score=24.06 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=65.3
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Q 013090 267 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTD 346 (449)
Q Consensus 267 ~DrpgLl~~i~~~L~~~gl~I~~A~i~t~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~~l~~r~~~~~~l~v~~~D 346 (449)
+--|..+.++++.+.++|+. .+++-|--|-. .+....++.+.|.+.+.. .+...|.+.+.|
T Consensus 146 ~~~~~~~~~~~~~~~~~G~~---------------~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~--~~~~~l~~H~Hn 206 (293)
T 3ewb_X 146 RSDRAFLIEAVQTAIDAGAT---------------VINIPDTVGYT--NPTEFGQLFQDLRREIKQ--FDDIIFASHCHD 206 (293)
T ss_dssp GSCHHHHHHHHHHHHHTTCC---------------EEEEECSSSCC--CHHHHHHHHHHHHHHCTT--GGGSEEEEECBC
T ss_pred CCCHHHHHHHHHHHHHcCCC---------------EEEecCCCCCC--CHHHHHHHHHHHHHhcCC--ccCceEEEEeCC
Confidence 34678899999999999874 34565666653 344555555555544321 024679999999
Q ss_pred CcChHHHHHHHHHhCCCcEEEEEEeecCCc
Q 013090 347 RVGLLSNVTRIFRENSLTVTRAEVATKSGK 376 (449)
Q Consensus 347 rpGLL~~it~~l~~~~i~I~~a~i~T~g~~ 376 (449)
-.|+-..=+-+--+.|+.+....+.-+|++
T Consensus 207 d~Gla~AN~laA~~aGa~~vd~sv~GlGer 236 (293)
T 3ewb_X 207 DLGMATANALAAIENGARRVEGTINGIGER 236 (293)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEEBGGGCCTT
T ss_pred CcChHHHHHHHHHHhCCCEEEeeccccccc
Confidence 999977666777789999999998888885
Done!