Your job contains 1 sequence.
>013093
MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP
SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNAARPKKLAWNKPSN
GVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQKVSNANANPNSNA
NRTMPARQRLKRSGGGVSNAGSGPAQTRPTQPPPPPPPPPFPVFPMPPNSFANLVTAMPD
PSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDGNYNNNFGGRHDQDR
GNYSNARDAHVQPQRGPPRGFVRPAPPNAAAFAPPQPMRPFPNPMGFPEFIYIPPMPVEA
AALRGVTGMPPFIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWV
PITLIASFPRVSFYSQISYFLITCSQFSL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013093
(449 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 180 1.4e-18 2
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 123 8.8e-16 3
POMBASE|SPAC1527.03 - symbol:SPAC1527.03 "RNA-binding pro... 135 8.3e-08 2
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 124 2.5e-07 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 124 3.7e-06 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 108 1.4e-05 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 124 4.7e-05 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 124 5.8e-05 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 124 5.8e-05 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 124 5.8e-05 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 124 5.9e-05 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 128 8.5e-05 2
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 121 0.00011 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 121 0.00013 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 121 0.00013 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 121 0.00013 1
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 120 0.00013 1
ASPGD|ASPL0000062948 - symbol:AN1288 species:162425 "Emer... 120 0.00016 3
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 120 0.00024 1
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 120 0.00051 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 115 0.00056 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 108 0.00081 1
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 118 0.00087 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 113 0.00096 1
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 180 (68.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 64/229 (27%), Positives = 87/229 (37%)
Query: 100 SDADKGNAARPKKLAWNKPSNGVVEVGPVMGAASWPALXXXXXXXXXXXXXXXXXXXXVA 159
S+A G KK W +PSNG EVGPVMGA+SWPAL
Sbjct: 101 SEASGGQDNAGKKPVWKRPSNGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSL--- 157
Query: 160 DGSVSGTQKVXXXXXXXXXXXXRTMPARQRLKRSGGGVSNAGSGPAQTRPTQXXXXXXXX 219
G V + ++PA ++ G +N P +R
Sbjct: 158 -GDVPSSSSASSSVPVTQGIANASVPAPKQ-----AGRANPNPTPNHSRQRSFKQRNGAS 211
Query: 220 XXXXXXXXXNSFANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMND---QRNSSR 276
S T +P +P P RG N GF SQ+H + QR+S R
Sbjct: 212 GSANGTVSQPSAQGSFTELPSHNP-SP--RGQNQK----NGFASQNHGGTENPSQRDSYR 264
Query: 277 R--GNYGQRGDGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRGFVR 323
GN+ Q G N G ++ + ++ N R+ + Q QRG P FVR
Sbjct: 265 NQNGNHHQSHGGRRNQEHGNQNWTFQRSF-NGREGNAQSQRGTP-AFVR 311
Score = 149 (57.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 75/309 (24%), Positives = 104/309 (33%)
Query: 2 AMTADSTSNHVTPRG-SGFSGDGLSS----PQLRRKNSPSQWSEVVRGEHDPASTTVNHS 56
A + + S+ ++PR SG G +S P+ + S W+++VRGE +P + +
Sbjct: 4 ATSNNPASSSMSPRRISGNHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVA 63
Query: 57 QXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXGSSDADKGNAARPKKLAWN 116
G D NA KK W
Sbjct: 64 GPSSPQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQD----NAG--KKPVWK 117
Query: 117 KPSNGVVEVGPVMGAASWPALXXXXXXXXXXXXXXXXXX------XXVADGSVSGTQKVX 170
+PSNG EVGPVMGA+SWPAL A SV TQ +
Sbjct: 118 RPSNGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIA 177
Query: 171 XXXXXXXXXXXRTMP------ARQRLKRSGGGVSNAGSGPAQTRPTQXXXXXXXXXXXX- 223
R P +RQR + G S + +G Q
Sbjct: 178 NASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSP 237
Query: 224 -XXXXXNSFANLVTA-MPDPSPREPLYRGSNWDARPV-GGFVSQSHPMND---QRN-SSR 276
N FA+ +PS R+ YR N + GG +Q H + QR+ + R
Sbjct: 238 RGQNQKNGFASQNHGGTENPSQRDS-YRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGR 296
Query: 277 RGN-YGQRG 284
GN QRG
Sbjct: 297 EGNAQSQRG 305
Score = 111 (44.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 390 MLIH-QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVS 432
M +H QI YYFSD NL+ D +L+ M+++G+VP+ ++A F +V+
Sbjct: 371 MKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVA 414
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 123 (48.4 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 20/42 (47%), Positives = 33/42 (78%)
Query: 391 LIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVS 432
++ Q++YYFS NL +DE L+ M+D+GWVP+ +IA+F R++
Sbjct: 339 ILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLA 380
Score = 99 (39.9 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 98 GSSDADKGNAARPKKLAWNKPS-NGVVEVGPVMGAA-SWPAL 137
G++ +D NA + WN PS N +VGPVMGAA SWPAL
Sbjct: 63 GNNSSDYDNADKKPPPVWNMPSSNSSSDVGPVMGAAESWPAL 104
Score = 85 (35.0 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 30/80 (37%), Positives = 37/80 (46%)
Query: 249 RGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDG-NYNNNFGGRHDQDRG----NY 303
R N R G F S + N QRN R + RG+G ++ N H G NY
Sbjct: 193 RDQNHSQRGGGSFGSGNF-RNSQRN--RNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNY 249
Query: 304 SNARDAHVQPQRGPPRGFVR 323
S RD H+QPQRG G +R
Sbjct: 250 SG-RDMHLQPQRGV--GMIR 266
Score = 81 (33.6 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 242 SPREPLYRGSNWDARPVGGFVSQSHPMNDQ-RNSSRRGNYGQRGDGNYNNNFGGRHDQDR 300
S R+P R +N + VS + P+N + +N S+RG G G GN+ N+ + +++
Sbjct: 164 SQRKPFRRNNNTSSSSTSSNVSNAAPLNTRDQNHSQRGG-GSFGSGNFRNS---QRNRNS 219
Query: 301 GNYSNARDAHVQPQRGPPRG 320
+Y H +R G
Sbjct: 220 SSYPRGEGLHHGNRRNYEHG 239
Score = 40 (19.1 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 NHVTPRGSGFSGDGLSSPQLRRKNSPS 36
NH + RG G G G R +NS S
Sbjct: 196 NH-SQRGGGSFGSGNFRNSQRNRNSSS 221
>POMBASE|SPAC1527.03 [details] [associations]
symbol:SPAC1527.03 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005844 "polysome" evidence=ISO] [GO:0006412
"translation" evidence=ISO] PomBase:SPAC1527.03 GO:GO:0005829
EMBL:CU329670 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:P05455
OrthoDB:EOG46MFST RefSeq:NP_594554.1 ProteinModelPortal:Q9P6K0
EnsemblFungi:SPAC1527.03.1 GeneID:2541645 KEGG:spo:SPAC1527.03
NextBio:20802738 Uniprot:Q9P6K0
Length = 475
Score = 135 (52.6 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 389 AMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV-SFYSQISYFLITC 444
A L Q++YYFS NL KD FL+ +MDD+G+VP+ +ASF R+ SF + ++ C
Sbjct: 327 AFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAAC 383
Score = 57 (25.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 252 NWDARPVGGFVSQSHPMND--QRNSS--RRGNYGQRGDGNYNNNFGGRHDQDR 300
N+ P+ S S ND +RN + RRGNY G N+ D R
Sbjct: 153 NFTHTPISNRKS-SRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASR 204
Score = 52 (23.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 238 MPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDGNYNNNFGGRHD 297
+ D S ++PL +N + V + +H R SSR N G R +GN GR
Sbjct: 129 LSDDS-QKPLAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDGSRRNGN------GRR- 180
Query: 298 QDRGNYSN 305
RGNYS+
Sbjct: 181 --RGNYSS 186
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 240 DPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNS-SRRGNYGQRGDGNYNNNF 292
D S + P + S+ A G S+ +D + S +G ++G +NN F
Sbjct: 242 DSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQ-RHNNGF 294
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 124 (48.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 387 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVSFYSQ 436
L + + QI+YYF + NL +D+FLK + D GWVP+ ++ F R+S S+
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSK 63
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLN 59
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 128 (50.1 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 394 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVSFYSQISYFLI 442
QI+YYFS+ NL KD FL+ M +G++P+ LIASFPRV ++ Y LI
Sbjct: 586 QIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTE-DYSLI 633
Score = 45 (20.9 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 265 SHPMNDQRNSSRRGNYGQRGDGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRG 320
SH NS + N GGR ++ RG R + + R PRG
Sbjct: 35 SHSSTQNENSQPEKQAHPPHNRREKENVGGRSERPRGEGKGKRRNNRKGDR-KPRG 89
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 264 QSHPMNDQRNSSRRGNYGQR--GDGN---YNNNFGGRHDQDRGNYSNARDA 309
Q+HP +++R G +R G+G NN G R + RG + A
Sbjct: 49 QAHPPHNRREKENVGGRSERPRGEGKGKRRNNRKGDR--KPRGETKTEKPA 97
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLN 59
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLN 59
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLN 59
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVS 432
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLN 59
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 394 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 431
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRV 259
>ASPGD|ASPL0000062948 [details] [associations]
symbol:AN1288 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001308 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACD01000017 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG46MFST RefSeq:XP_658892.1
EnsemblFungi:CADANIAT00001332 GeneID:2877068 KEGG:ani:AN1288.2
HOGENOM:HOG000208218 OMA:TFSYAQA Uniprot:Q5BDU2
Length = 734
Score = 120 (47.3 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVSFYSQ 436
S+ M+ Q+DYYFS NL KD +L+ +MD QG+V + +IA+F RV S+
Sbjct: 571 SVIGMITLQLDYYFSVDNLCKDIYLRKHMDSQGFVALNVIANFKRVKQLSE 621
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 282 QRGDGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRGFV 322
+RG G++ GG H Y+ A+ +H P+G++
Sbjct: 458 ERGRGSHRGR-GGGH----AGYNGAQASHFPNNHMGPQGYM 493
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 125 VGPVMGAASWP 135
V PV AASWP
Sbjct: 220 VPPVADAASWP 230
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 394 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 431
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRV 259
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 394 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 431
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRV 259
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 391 LIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVSFYS 435
+I Q++YYF DANL +D+FL+ + ++ GWVP++++ +F R++ S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLS 100
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 108 (43.1 bits), Expect = 0.00081, P = 0.00081
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 387 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVSFYSQ 436
L + + QI+YYF + NL +D+FLK + D GWVP+ ++ F R+S S+
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSK 63
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 118 (46.6 bits), Expect = 0.00087, P = 0.00087
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 394 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 431
QI+YYFS NL +D FL+ MD G++PITLIASF RV
Sbjct: 249 QIEYYFSVDNLERDFFLRRKMDSDGFLPITLIASFHRV 286
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 113 (44.8 bits), Expect = 0.00096, P = 0.00096
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 391 LIHQIDYYFSDANLVKDEFLKSNM-DDQGWVPITLIASFPRVSFYSQ 436
+I Q++YYF + NL +D+FL+ + +D GWVPIT + +F R++ S+
Sbjct: 16 IIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISK 62
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 449 323 0.00086 116 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 612 (65 KB)
Total size of DFA: 232 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.45u 0.18s 24.63t Elapsed: 00:00:01
Total cpu time: 24.46u 0.18s 24.64t Elapsed: 00:00:01
Start: Thu May 9 18:23:19 2013 End: Thu May 9 18:23:20 2013