Query 013093
Match_columns 449
No_of_seqs 168 out of 580
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqk_A C-MPL binding protein; 99.9 5.7E-27 2E-31 199.6 4.0 69 381-449 8-76 (101)
2 1s29_A LA protein; winged heli 99.9 3.8E-26 1.3E-30 191.4 5.7 66 384-449 7-74 (92)
3 2voo_A Lupus LA protein; RNA-b 99.8 3E-21 1E-25 175.9 6.1 65 384-448 9-74 (193)
4 2k9l_A RNA polymerase sigma fa 77.9 2.5 8.5E-05 33.4 4.3 54 388-446 15-70 (76)
5 2k9m_A RNA polymerase sigma fa 66.0 3.1 0.0001 36.3 2.5 56 386-446 4-61 (130)
6 3htx_A HEN1; HEN1, small RNA m 58.8 3.3 0.00011 46.9 1.7 53 384-436 104-165 (950)
7 2h2m_A Protein MURR1, COMM dom 21.6 18 0.00063 31.2 -0.2 35 398-435 24-59 (108)
8 1vdl_A Ubiquitin carboxyl-term 16.5 48 0.0016 27.2 1.2 21 428-448 28-50 (80)
9 2rdq_A 1-deoxypentalenic acid 15.7 24 0.00082 32.5 -0.9 48 397-444 11-58 (288)
10 2cx6_A Hypothetical protein YH 13.5 59 0.002 26.3 1.0 57 384-446 14-74 (90)
No 1
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.93 E-value=5.7e-27 Score=199.56 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHhhhhhhcCCCCcCcchHHHhhhCCCCcEehhhhccchhhhhccCCHHHHHHHhhcCC
Q 013093 381 PVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVSFYSQISYFLITCSQFSL 449 (449)
Q Consensus 381 P~~e~~L~~~I~kQIEYYFSDeNL~kD~FLr~~Md~dG~VPI~lIasFnRVK~LT~d~~~IleALr~St 449 (449)
++.+++|+++|++||||||||+||++|+||+++|+.||||||++|++|||||+||.|+++|++||+.|+
T Consensus 8 ~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~ 76 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSP 76 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999985
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.92 E-value=3.8e-26 Score=191.35 Aligned_cols=66 Identities=27% Similarity=0.442 Sum_probs=63.7
Q ss_pred cHHHHHHHHhhhhhhcCCCCcCcchHHHhhh--CCCCcEehhhhccchhhhhccCCHHHHHHHhhcCC
Q 013093 384 EPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVSFYSQISYFLITCSQFSL 449 (449)
Q Consensus 384 e~~L~~~I~kQIEYYFSDeNL~kD~FLr~~M--d~dG~VPI~lIasFnRVK~LT~d~~~IleALr~St 449 (449)
+++++++|++||||||||+||+||+||+++| +.||||||++|++|||||+||.|+++|++||+.|+
T Consensus 7 ~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~ 74 (92)
T 1s29_A 7 SSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSE 74 (92)
T ss_dssp CHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCC
Confidence 5689999999999999999999999999999 79999999999999999999999999999999985
No 3
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.83 E-value=3e-21 Score=175.86 Aligned_cols=65 Identities=35% Similarity=0.679 Sum_probs=62.6
Q ss_pred cHHHHHHHHhhhhhhcCCCCcCcchHHHhhhC-CCCcEehhhhccchhhhhccCCHHHHHHHhhcC
Q 013093 384 EPSLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVSFYSQISYFLITCSQFS 448 (449)
Q Consensus 384 e~~L~~~I~kQIEYYFSDeNL~kD~FLr~~Md-~dG~VPI~lIasFnRVK~LT~d~~~IleALr~S 448 (449)
.++|+++|++||||||||+||++|.||+++|+ ++|||+|.+|++|+|||+|+.|+++|++||+.|
T Consensus 9 ~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S 74 (193)
T 2voo_A 9 MAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKS 74 (193)
T ss_dssp CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhc
Confidence 35899999999999999999999999999997 799999999999999999999999999999988
No 4
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=77.88 E-value=2.5 Score=33.38 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=38.6
Q ss_pred HHHHHhhhhhhcCCCCcCcchHHHhhhCCCCcE--ehhhhccchhhhhccCCHHHHHHHhh
Q 013093 388 AAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWV--PITLIASFPRVSFYSQISYFLITCSQ 446 (449)
Q Consensus 388 ~~~I~kQIEYYFSDeNL~kD~FLr~~Md~dG~V--PI~lIasFnRVK~LT~d~~~IleALr 446 (449)
.+.|..||...|++.-..==.||...+|++||+ ++..|+. .|..+.+.|.+||+
T Consensus 15 ~ehL~~Ql~~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 15 LEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 70 (76)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHH-----HHTSCHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 788999999556666555557899999999996 6666763 23356666666654
No 5
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=66.00 E-value=3.1 Score=36.26 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhcCCCCcCcchHHHhhhCCCCcE--ehhhhccchhhhhccCCHHHHHHHhh
Q 013093 386 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWV--PITLIASFPRVSFYSQISYFLITCSQ 446 (449)
Q Consensus 386 ~L~~~I~kQIEYYFSDeNL~kD~FLr~~Md~dG~V--PI~lIasFnRVK~LT~d~~~IleALr 446 (449)
.|.+.|..||...|++.-..==.||...+|++||+ ++..|+. .|..+.+.|.++|+
T Consensus 4 sL~e~L~~Ql~~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 61 (130)
T 2k9m_A 4 SELEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 61 (130)
T ss_dssp CHHHHHHHHHHHHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHH-----HTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHcccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 57888999999556665544446888888999997 5666663 23356666666554
No 6
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=58.84 E-value=3.3 Score=46.87 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=43.1
Q ss_pred cHHHHHHHHhhhhhhcCCCCcCcchHHHhhhC--------CCCcEehhhhccc-hhhhhccC
Q 013093 384 EPSLAAMLIHQIDYYFSDANLVKDEFLKSNMD--------DQGWVPITLIASF-PRVSFYSQ 436 (449)
Q Consensus 384 e~~L~~~I~kQIEYYFSDeNL~kD~FLr~~Md--------~dG~VPI~lIasF-nRVK~LT~ 436 (449)
.++--+.|+.+|+|.|+|+=|.-++=|..++. --|.||+.+|+.+ -||-.+++
T Consensus 104 ~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck 165 (950)
T 3htx_A 104 VDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCK 165 (950)
T ss_dssp HHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhh
Confidence 46778899999999999999998887777762 4589999999999 56665553
No 7
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=21.55 E-value=18 Score=31.25 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=26.1
Q ss_pred hcCCCCcCcchHHHhhhCCCCcEehhhhccc-hhhhhcc
Q 013093 398 YFSDANLVKDEFLKSNMDDQGWVPITLIASF-PRVSFYS 435 (449)
Q Consensus 398 YFSDeNL~kD~FLr~~Md~dG~VPI~lIasF-nRVK~LT 435 (449)
||.|.-+ .|.||++++=.| |++..|..| +|++.|.
T Consensus 24 y~~~~~I-tee~L~~~lypd--vt~eef~~~~~K~~~li 59 (108)
T 2h2m_A 24 FHGYPGI-TEELLRSQLYPE--VPPEEFRPFLAKMRGIL 59 (108)
T ss_dssp SSCCSSC-CHHHHHHHHCSS--SCSSTHHHHHTTTSTTH
T ss_pred HcCCccc-cHHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence 4577777 999999999766 777777666 5666554
No 8
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=16.49 E-value=48 Score=27.21 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=17.1
Q ss_pred chhhhhcc--CCHHHHHHHhhcC
Q 013093 428 FPRVSFYS--QISYFLITCSQFS 448 (449)
Q Consensus 428 FnRVK~LT--~d~~~IleALr~S 448 (449)
.|.+|.+| .|.+++.+||+.|
T Consensus 28 LnQLrEITGiqD~~~L~~ALkas 50 (80)
T 1vdl_A 28 LNQLREITGINDAQILQQALKDS 50 (80)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHhc
Confidence 36777877 7999999999876
No 9
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=15.65 E-value=24 Score=32.49 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=33.6
Q ss_pred hhcCCCCcCcchHHHhhhCCCCcEehhhhccchhhhhccCCHHHHHHH
Q 013093 397 YYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVSFYSQISYFLITC 444 (449)
Q Consensus 397 YYFSDeNL~kD~FLr~~Md~dG~VPI~lIasFnRVK~LT~d~~~IleA 444 (449)
|--|+..|....-++++++.||||=|.-++.=..|.+|...++.+++.
T Consensus 11 ~~~~~~~ls~~~~~~~~f~~dGyvvl~~~l~~e~v~~l~~~~~~~~~~ 58 (288)
T 2rdq_A 11 YTDCTPLLGDRAALDSFYEEHGYLFLRNVLDRDLVKTVAEQMREGLVA 58 (288)
T ss_dssp CCCCGGGTTCHHHHHHHHHHHSEEEECSCSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHhCCEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 334555566555678888889999888887777777777666665543
No 10
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=13.48 E-value=59 Score=26.25 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhhhh--hcCCCCcCcchHHHhhhCCCCcE-ehhhhccchhh-hhccCCHHHHHHHhh
Q 013093 384 EPSLAAMLIHQIDY--YFSDANLVKDEFLKSNMDDQGWV-PITLIASFPRV-SFYSQISYFLITCSQ 446 (449)
Q Consensus 384 e~~L~~~I~kQIEY--YFSDeNL~kD~FLr~~Md~dG~V-PI~lIasFnRV-K~LT~d~~~IleALr 446 (449)
.+++.+.|.+++.| ||. .|| |. |..-|. ||| +.-+++-|..+ .....+...|++.|+
T Consensus 14 ~~~f~~~~~~~~~~p~~fG-~Nl--DA-L~D~Lt--~~~~~~P~~i~~~~~~~~~~~~~~~ll~vf~ 74 (90)
T 2cx6_A 14 QEDFYRDFSQTFGLAKDKV-RDL--DS-LWDVLM--NDVLPLPLEIEFVHLGEKTRRRFGALILLFD 74 (90)
T ss_dssp HHHHHHHHHHHTTCCTTSC-SSH--HH-HHHHHH--TTCSCSSEEEEEESCCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhhC-CCH--HH-HHHHHc--cCCCCCCEEEEEEeCchhhHHHHHHHHHHHH
Confidence 45788999999987 774 455 33 333333 345 44455555554 222234455666654
Done!