Query 013094
Match_columns 449
No_of_seqs 158 out of 295
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 00:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 3.6E-39 7.7E-44 264.8 -3.2 78 154-231 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 41.5 13 0.00028 32.6 1.0 19 191-209 25-43 (94)
3 PRK00241 nudC NADH pyrophospha 34.6 11 0.00023 37.3 -0.6 36 167-203 92-127 (256)
4 PF12108 SF3a60_bindingd: Spli 32.2 16 0.00035 25.7 0.1 12 163-174 15-26 (28)
5 PF14776 UNC-79: Cation-channe 23.3 49 0.0011 36.7 1.9 27 174-200 262-297 (525)
6 KOG4846 Nuclear receptor [Sign 22.7 53 0.0011 36.0 1.9 51 149-199 129-191 (538)
7 COG2502 AsnA Asparagine synthe 21.6 33 0.00072 35.5 0.2 15 14-28 116-130 (330)
8 COG2816 NPY1 NTP pyrophosphohy 20.4 28 0.0006 35.7 -0.6 36 167-203 104-139 (279)
9 PF09297 zf-NADH-PPase: NADH p 20.0 24 0.00052 24.4 -0.8 31 172-203 1-31 (32)
10 PRK06424 transcription factor; 18.9 53 0.0012 30.3 0.9 21 184-204 14-34 (144)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=3.6e-39 Score=264.80 Aligned_cols=78 Identities=67% Similarity=1.219 Sum_probs=63.2
Q ss_pred ceeeCCCchhhhcchhhhhcccchhhhcCCCeEEECChhhHHHHhhhcccCCccccccchhHHHHHHHHHhhhccCCc
Q 013094 154 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 231 (449)
Q Consensus 154 ~CQVdGC~~dLs~~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~hN~RRRk~~~ 231 (449)
+||||||++||+.+|+||+||||||.|+|||+|+++|+++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=41.54 E-value=13 Score=32.64 Aligned_cols=19 Identities=37% Similarity=0.607 Sum_probs=15.2
Q ss_pred hhhHHHHhhhcccCCcccc
Q 013094 191 LERRFCQQCSRFHGLSEFD 209 (449)
Q Consensus 191 ~~qRFCQQCsRFH~L~EFD 209 (449)
..-|+|++|.++|+..|=|
T Consensus 25 ~~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 25 SAARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhhHhHHHhhhhcccccCC
Confidence 3569999999999876544
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=34.56 E-value=11 Score=37.30 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.1
Q ss_pred chhhhhcccchhhhcCCCeEEECChhhHHHHhhhccc
Q 013094 167 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 203 (449)
Q Consensus 167 ~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH 203 (449)
+..+|++||-|..+-....+. .+...|.|..|++.|
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEE
Confidence 457899999999888765544 455578899998654
No 4
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=32.16 E-value=16 Score=25.69 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=7.9
Q ss_pred hhhcchhhhhcc
Q 013094 163 DLSSAKDYHRKH 174 (449)
Q Consensus 163 dLs~~k~YhrRh 174 (449)
-|..+|+||+||
T Consensus 15 rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 15 RLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhC
Confidence 356678888876
No 5
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=23.31 E-value=49 Score=36.70 Aligned_cols=27 Identities=37% Similarity=0.721 Sum_probs=20.0
Q ss_pred ccchhhhcCCCeEEE---------CChhhHHHHhhh
Q 013094 174 HRVCENHSKSPKVIV---------GGLERRFCQQCS 200 (449)
Q Consensus 174 hrVCe~H~kap~V~v---------~G~~qRFCQQCs 200 (449)
.|-|..+.|..+|+- +++..|+||||.
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch 297 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCH 297 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHh
Confidence 355666677777763 778899999994
No 6
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=22.68 E-value=53 Score=35.99 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCCCcceeeCCCch--------hhhcchhhhhcc---cchh-hhcCCCeEEECChhhHHHHhh
Q 013094 149 TTQAALCQVEGCGL--------DLSSAKDYHRKH---RVCE-NHSKSPKVIVGGLERRFCQQC 199 (449)
Q Consensus 149 ~~~~~~CQVdGC~~--------dLs~~k~YhrRh---rVCe-~H~kap~V~v~G~~qRFCQQC 199 (449)
+...-.|+|.|=.+ .+.++|.||||- ||=- .+.|+..-.|--.-.--||+|
T Consensus 129 ~~~~~lCkVCgDkASGfHYGV~aCEGCKGFFRRSIQqkI~YrrClk~e~C~I~R~nRNRCQ~C 191 (538)
T KOG4846|consen 129 GKAISLCKVCGDKASGFHYGVTACEGCKGFFRRSIQQKIDYRRCLKQEVCEIKRENRNRCQYC 191 (538)
T ss_pred cceeEeehhhccccccceeceeecccchHHHHHHHHHhhhHHHHhhhhceehhhhccchhhhh
Confidence 34456899954332 356789999984 3322 445666666555555669999
No 7
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=21.61 E-value=33 Score=35.51 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=11.5
Q ss_pred ccccccccccccccc
Q 013094 14 QWDWENLIMFNATAA 28 (449)
Q Consensus 14 ~WdWEnl~~~~~~~~ 28 (449)
|||||.+++-+.+..
T Consensus 116 QWDWEkvi~~g~rNl 130 (330)
T COG2502 116 QWDWEKVIPDGDRNL 130 (330)
T ss_pred ccchhhhcCCccccH
Confidence 899999988776443
No 8
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.36 E-value=28 Score=35.73 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=28.8
Q ss_pred chhhhhcccchhhhcCCCeEEECChhhHHHHhhhccc
Q 013094 167 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 203 (449)
Q Consensus 167 ~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH 203 (449)
+-++|++||.|..+ -.++...+|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 34679999999865 5677788888899999998655
No 9
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.01 E-value=24 Score=24.40 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=17.4
Q ss_pred hcccchhhhcCCCeEEECChhhHHHHhhhccc
Q 013094 172 RKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 203 (449)
Q Consensus 172 rRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH 203 (449)
++||-|... -+|++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~C-G~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGRC-GAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TTT---BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCcC-CccccCCCCcCEeECCCCcCEe
Confidence 356777654 4567777777788888887654
No 10
>PRK06424 transcription factor; Provisional
Probab=18.90 E-value=53 Score=30.34 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=18.5
Q ss_pred CeEEECChhhHHHHhhhcccC
Q 013094 184 PKVIVGGLERRFCQQCSRFHG 204 (449)
Q Consensus 184 p~V~v~G~~qRFCQQCsRFH~ 204 (449)
-.|+|+|.+.+-|..|.+|=.
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~ 34 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGT 34 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCC
Confidence 468899999999999998854
Done!