Query 013094
Match_columns 449
No_of_seqs 158 out of 295
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 04:05:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.7E-42 5.9E-47 291.1 -2.2 87 149-235 5-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 2.5E-41 8.6E-46 281.2 -4.4 82 152-233 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 7.6E-32 2.6E-36 210.7 -0.2 59 151-209 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 23.1 14 0.00048 35.0 -0.7 36 167-203 100-135 (269)
5 2dt7_A Splicing factor 3A subu 21.6 21 0.00073 25.4 0.2 11 164-174 19-29 (38)
6 2lau_A THAP domain-containing 13.7 60 0.0021 25.0 1.1 10 153-162 5-14 (81)
7 2d8r_A THAP domain-containing 11.0 65 0.0022 26.0 0.5 11 153-163 10-20 (99)
8 2w0t_A Lethal(3)malignant brai 9.4 60 0.0021 24.0 -0.2 28 195-222 8-36 (43)
9 4a6q_A Histone deacetylase com 9.2 42 0.0015 30.1 -1.3 29 171-210 20-48 (143)
10 1loi_A Cyclic 3',5'-AMP specif 7.9 76 0.0026 21.0 -0.2 21 193-213 5-25 (26)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.7e-42 Score=291.11 Aligned_cols=87 Identities=59% Similarity=1.041 Sum_probs=80.4
Q ss_pred CCCCcceeeCCCchhhhcchhhhhcccchhhhcCCCeEEECChhhHHHHhhhcccCCccccccchhHHHHHHHHHhhhcc
Q 013094 149 TTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK 228 (449)
Q Consensus 149 ~~~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~hN~RRRk 228 (449)
+.+.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus 5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk 84 (94)
T 1ul4_A 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84 (94)
T ss_dssp ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 013094 229 SQPEAVR 235 (449)
Q Consensus 229 ~~~~~~~ 235 (449)
+++|+..
T Consensus 85 ~~~~~~~ 91 (94)
T 1ul4_A 85 SSGESGP 91 (94)
T ss_dssp CCCC---
T ss_pred CCCCcCC
Confidence 9999863
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.5e-41 Score=281.22 Aligned_cols=82 Identities=46% Similarity=0.929 Sum_probs=79.1
Q ss_pred CcceeeCCCchhhhcchhhhhcccchhhhcCCCeEEECChhhHHHHhhhcccCCccccccchhHHHHHHHHHhhhccCCc
Q 013094 152 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 231 (449)
Q Consensus 152 ~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~hN~RRRk~~~ 231 (449)
.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++.
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cc
Q 013094 232 EA 233 (449)
Q Consensus 232 ~~ 233 (449)
+.
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=7.6e-32 Score=210.69 Aligned_cols=59 Identities=64% Similarity=1.203 Sum_probs=57.2
Q ss_pred CCcceeeCCCchhhhcchhhhhcccchhhhcCCCeEEECChhhHHHHhhhcccCCcccc
Q 013094 151 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 209 (449)
Q Consensus 151 ~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH~L~EFD 209 (449)
+.++||||||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46799999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.14 E-value=14 Score=35.02 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=26.4
Q ss_pred chhhhhcccchhhhcCCCeEEECChhhHHHHhhhccc
Q 013094 167 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 203 (449)
Q Consensus 167 ~k~YhrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH 203 (449)
+..++++++-|..+- .+.+..++...+.|..|+..|
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 456788899998865 455666777788899987544
No 5
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.58 E-value=21 Score=25.36 Aligned_cols=11 Identities=55% Similarity=1.041 Sum_probs=6.7
Q ss_pred hhcchhhhhcc
Q 013094 164 LSSAKDYHRKH 174 (449)
Q Consensus 164 Ls~~k~YhrRh 174 (449)
|..+|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 45566666665
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=13.73 E-value=60 Score=24.98 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=6.8
Q ss_pred cceeeCCCch
Q 013094 153 ALCQVEGCGL 162 (449)
Q Consensus 153 ~~CQVdGC~~ 162 (449)
..|-|.||..
T Consensus 5 ~~C~v~gC~n 14 (81)
T 2lau_A 5 FTCCVPGCYN 14 (81)
T ss_dssp CSCCCSSSSS
T ss_pred CEEEeCCCcC
Confidence 3677888853
No 7
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=10.99 E-value=65 Score=26.01 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.3
Q ss_pred cceeeCCCchh
Q 013094 153 ALCQVEGCGLD 163 (449)
Q Consensus 153 ~~CQVdGC~~d 163 (449)
..|-|.||...
T Consensus 10 ~~C~v~gC~n~ 20 (99)
T 2d8r_A 10 TNCAAAGCATT 20 (99)
T ss_dssp CCCCSSSCCCS
T ss_pred CeeEeCCCCCC
Confidence 36888999854
No 8
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=9.43 E-value=60 Score=23.96 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=22.5
Q ss_pred HHHhhhcccCCccc-cccchhHHHHHHHH
Q 013094 195 FCQQCSRFHGLSEF-DEKKRSCRRRLSDH 222 (449)
Q Consensus 195 FCQQCsRFH~L~EF-Dg~KRSCR~rL~~h 222 (449)
-|++|+++-+-..| -..||=|-...+++
T Consensus 8 ~CE~CG~~g~~~~F~~ksKRFCS~~Carr 36 (43)
T 2w0t_A 8 VCEMCGIVGTREAFFSKTKRFCSVSCSRS 36 (43)
T ss_dssp ECTTTCCEEETTTSCTTTSSSSSHHHHHH
T ss_pred hhhhhcCcchhhhhccCCcceechhhhCc
Confidence 49999999888888 78899887666654
No 9
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=9.16 E-value=42 Score=30.13 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=22.4
Q ss_pred hhcccchhhhcCCCeEEECChhhHHHHhhhcccCCccccc
Q 013094 171 HRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 210 (449)
Q Consensus 171 hrRhrVCe~H~kap~V~v~G~~qRFCQQCsRFH~L~EFDg 210 (449)
--|.++|+.+.+ -||.+=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 348899998763 47766579999999974
No 10
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=7.90 E-value=76 Score=21.01 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=14.6
Q ss_pred hHHHHhhhcccCCccccccch
Q 013094 193 RRFCQQCSRFHGLSEFDEKKR 213 (449)
Q Consensus 193 qRFCQQCsRFH~L~EFDg~KR 213 (449)
--||.-|++=-.+.=+|+-||
T Consensus 5 dffcetcskpwlvgwwdqfkr 25 (26)
T 1loi_A 5 DFFCETCSKPWLVGWWDQFKR 25 (26)
T ss_dssp HHHHHTSSCTTGGGGHHHHTC
T ss_pred HHHHHhcCCchhhhhHHHhcc
Confidence 358999998776666665554
Done!