Query 013095
Match_columns 449
No_of_seqs 235 out of 1551
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.2E-75 4.8E-80 615.4 26.9 358 38-449 64-429 (727)
2 PLN03192 Voltage-dependent pot 100.0 9.5E-57 2.1E-61 498.2 25.6 332 41-449 51-384 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 5.4E-52 1.2E-56 413.3 13.2 350 41-448 207-557 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 9.8E-48 2.1E-52 379.2 23.4 287 102-449 26-317 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 8.5E-39 1.8E-43 320.1 14.4 318 40-449 216-537 (815)
6 KOG3713 Voltage-gated K+ chann 99.6 1.8E-14 4E-19 144.8 13.2 57 314-370 377-433 (477)
7 PF00520 Ion_trans: Ion transp 99.5 2.2E-13 4.7E-18 124.8 9.9 189 109-363 1-200 (200)
8 PF07885 Ion_trans_2: Ion chan 99.2 7E-11 1.5E-15 93.0 9.9 55 314-368 24-78 (79)
9 KOG1545 Voltage-gated shaker-l 99.2 6.7E-12 1.4E-16 121.0 2.6 50 314-363 393-442 (507)
10 KOG1419 Voltage-gated K+ chann 99.0 2.6E-09 5.5E-14 108.5 11.9 89 311-406 266-354 (654)
11 KOG4390 Voltage-gated A-type K 98.6 2.1E-09 4.6E-14 104.7 -4.2 56 312-367 354-413 (632)
12 KOG1420 Ca2+-activated K+ chan 98.5 3.8E-07 8.2E-12 93.1 8.9 129 313-448 287-417 (1103)
13 PRK10537 voltage-gated potassi 98.4 6.9E-07 1.5E-11 91.2 8.3 54 313-366 167-220 (393)
14 KOG3684 Ca2+-activated K+ chan 98.1 6.6E-05 1.4E-09 75.6 14.8 91 311-409 284-374 (489)
15 PF01007 IRK: Inward rectifier 97.8 0.00014 2.9E-09 72.8 11.2 57 313-369 83-141 (336)
16 KOG1418 Tandem pore domain K+ 97.8 2.8E-05 6.1E-10 79.9 5.4 57 314-370 115-171 (433)
17 KOG4404 Tandem pore domain K+ 96.4 0.00089 1.9E-08 64.9 0.4 50 314-363 80-129 (350)
18 KOG4404 Tandem pore domain K+ 96.1 0.0078 1.7E-07 58.5 5.0 59 314-372 186-252 (350)
19 PF08412 Ion_trans_N: Ion tran 96.0 0.00089 1.9E-08 51.9 -1.8 31 41-83 36-66 (77)
20 KOG1418 Tandem pore domain K+ 95.8 0.0031 6.7E-08 64.7 1.0 47 314-360 242-296 (433)
21 KOG3827 Inward rectifier K+ ch 94.7 0.13 2.7E-06 51.5 8.1 54 314-367 112-167 (400)
22 PF08006 DUF1700: Protein of u 92.3 0.55 1.2E-05 42.7 7.6 57 378-436 4-64 (181)
23 COG4709 Predicted membrane pro 91.7 0.72 1.6E-05 41.7 7.3 62 379-442 5-70 (195)
24 KOG3193 K+ channel subunit [In 90.0 0.096 2.1E-06 54.2 0.2 40 316-355 219-258 (1087)
25 KOG2302 T-type voltage-gated C 87.6 9.2 0.0002 43.1 12.9 41 106-160 1157-1200(1956)
26 PF14377 DUF4414: Domain of un 86.1 1.5 3.3E-05 36.3 5.0 44 392-435 52-105 (108)
27 PLN03223 Polycystin cation cha 85.9 20 0.00044 42.0 14.8 54 386-443 1453-1515(1634)
28 PF13314 DUF4083: Domain of un 79.4 13 0.00028 27.0 6.7 47 341-390 5-57 (58)
29 KOG0498 K+-channel ERG and rel 69.5 80 0.0017 35.1 13.1 41 391-432 402-446 (727)
30 KOG3676 Ca2+-permeable cation 68.5 14 0.00031 40.7 7.0 75 327-402 601-682 (782)
31 PF14377 DUF4414: Domain of un 68.4 13 0.00029 30.7 5.5 48 392-439 8-68 (108)
32 PF00060 Lig_chan: Ligand-gate 66.3 10 0.00022 32.5 4.6 76 310-391 40-115 (148)
33 PF02037 SAP: SAP domain; Int 58.5 17 0.00036 23.5 3.4 26 380-405 5-35 (35)
34 PF00520 Ion_trans: Ion transp 57.1 1.1E+02 0.0023 26.9 9.9 54 309-362 136-194 (200)
35 PF13623 SurA_N_2: SurA N-term 44.3 57 0.0012 28.6 5.5 44 346-389 10-66 (145)
36 PHA03029 hypothetical protein; 44.3 82 0.0018 24.1 5.5 42 338-379 2-43 (92)
37 KOG2301 Voltage-gated Ca2+ cha 42.9 1.6E+02 0.0035 36.0 10.5 41 105-162 872-914 (1592)
38 COG5559 Uncharacterized conser 41.9 25 0.00054 25.6 2.3 22 390-411 8-29 (65)
39 cd07313 terB_like_2 tellurium 40.0 1.4E+02 0.003 23.8 7.0 61 378-438 18-81 (104)
40 PF10011 DUF2254: Predicted me 38.7 1.1E+02 0.0025 31.0 7.6 77 312-388 98-174 (371)
41 PF10047 DUF2281: Protein of u 38.0 28 0.0006 26.1 2.3 23 390-412 9-31 (66)
42 COG5559 Uncharacterized conser 37.3 38 0.00082 24.7 2.7 18 419-436 6-23 (65)
43 PF01484 Col_cuticle_N: Nemato 35.5 1.5E+02 0.0032 20.5 5.7 40 344-383 9-48 (53)
44 smart00513 SAP Putative DNA-bi 34.7 41 0.00089 21.5 2.4 25 381-405 6-35 (35)
45 PF13867 SAP30_Sin3_bdg: Sin3 30.6 94 0.002 22.1 3.9 37 381-422 3-46 (53)
46 PRK06771 hypothetical protein; 30.5 2.2E+02 0.0047 23.0 6.2 47 357-403 15-61 (93)
47 PRK07668 hypothetical protein; 27.3 2E+02 0.0043 27.7 6.7 59 377-435 6-66 (254)
48 PLN03192 Voltage-dependent pot 25.8 1E+03 0.022 27.0 19.3 43 391-438 357-399 (823)
49 KOG3300 NADH:ubiquinone oxidor 25.5 1.6E+02 0.0035 25.2 4.9 45 380-425 61-105 (146)
50 PF10855 DUF2648: Protein of u 24.5 58 0.0012 20.7 1.6 14 345-358 5-18 (33)
51 KOG4560 Transcription factor I 23.8 73 0.0016 36.5 3.3 51 153-203 721-774 (1897)
52 TIGR00933 2a38 potassium uptak 22.8 1E+02 0.0022 31.6 4.0 86 313-405 230-328 (390)
53 PF06971 Put_DNA-bind_N: Putat 22.2 2.3E+02 0.0051 19.9 4.6 43 391-433 1-50 (50)
54 PHA01757 hypothetical protein 22.2 3.9E+02 0.0083 20.9 6.3 47 338-385 4-50 (98)
55 smart00511 ORANGE Orange domai 21.2 2.7E+02 0.0058 18.7 5.1 36 375-410 5-41 (45)
56 PF14841 FliG_M: FliG middle d 20.5 99 0.0021 23.8 2.7 19 418-436 30-48 (79)
57 PF08285 DPM3: Dolichol-phosph 20.2 4.6E+02 0.0099 21.0 8.1 40 355-394 48-90 (91)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-75 Score=615.44 Aligned_cols=358 Identities=33% Similarity=0.557 Sum_probs=307.1
Q ss_pred hhcccccCccchhhhhcceEEEeecCCCCccchhhhhhhheeecceeeEEEeecCCcceEEecCcccchhhhHHHHHHHH
Q 013095 38 LLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFL 117 (449)
Q Consensus 38 ~~~~~vi~P~s~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 117 (449)
.+...++||.|+|++.||.++++ +|+++++++|++||++.......| .|......++++|.++|++
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll------------~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~f 129 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLL------------LVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIF 129 (727)
T ss_pred cccceeECCCChHHHHHHHHHHH------------HHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHH
Confidence 44467999999999999999999 999999999999999999888888 7888888999999999999
Q ss_pred HHHHHhhhcccceeccccCCC-ceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhhHHhHhhHHHHHHHH
Q 013095 118 YIFYITPQLLADLVASVNAKH-EANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLI 195 (449)
Q Consensus 118 f~~DI~l~F~t~y~d~~~~~g-~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~~llrl~rl~ 195 (449)
|++||+++|+|||+++ ++ ++|.||++||+||+|+|| +|++|++|+++++.|..+.. ...... ...+..+.++
T Consensus 130 flvdIvL~Frtayv~~---~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~--~~~~~~-~~~l~~il~~ 203 (727)
T KOG0498|consen 130 FLVDIVLNFRTAYVDP---SSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGS--TSLALE-STILVGILLL 203 (727)
T ss_pred HHHHHHHhheEEEECC---CCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecc--cchhhh-HHHHHHHHHH
Confidence 9999999999999998 44 599999999999999999 99999999999988765411 111111 1122222334
Q ss_pred HHHHHhhhhhhc------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCccceecc
Q 013095 196 QFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY 269 (449)
Q Consensus 196 r~l~Rl~r~~~l------~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~~~~~~~ 269 (449)
+|++|++|++++ ..++..+++|.+++++|+++++++||+||+||++|.++..+||..+
T Consensus 204 ~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------- 267 (727)
T KOG0498|consen 204 QRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc----------------
Confidence 446677776665 5677789999998899999999999999999999999888787543
Q ss_pred CCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHH
Q 013095 270 DSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVT 349 (449)
Q Consensus 270 ~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~m 349 (449)
+|+...+.-.+..+..|+||+|. ++.+|++|+||+++|||||||||++|+|..|++|+|++|
T Consensus 268 ------tw~~~l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m 329 (727)
T KOG0498|consen 268 ------TWLGSLGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM 329 (727)
T ss_pred ------ccccccccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence 34332110000112336677654 455999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHH
Q 013095 350 ISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELR 429 (449)
Q Consensus 350 i~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr 429 (449)
++|.++||++||||+++++++..+.++|+.|+.++++||+.|+||++||+||++|++|+|+.++|+||+++|++||+.||
T Consensus 330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR 409 (727)
T KOG0498|consen 330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR 409 (727)
T ss_pred HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHccccCCCCC
Q 013095 430 RNIKRELCLDLLKNVSPLSF 449 (449)
Q Consensus 430 ~eI~~~~~~~~l~~vplF~n 449 (449)
+||.+|+|.++|++||+|++
T Consensus 410 ~dI~~hL~~~lv~~vpLF~~ 429 (727)
T KOG0498|consen 410 RDIKRHLCLDLVRKVPLFAG 429 (727)
T ss_pred HHHHHHHhHHHHhhCchhhc
Confidence 99999999999999999985
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=9.5e-57 Score=498.18 Aligned_cols=332 Identities=14% Similarity=0.211 Sum_probs=259.6
Q ss_pred ccccCccchhhhhcceEEEeecCCCCccchhhhhhhheeecceeeEEEeecCCcceEEecCcccchhhhHHHHHHHHHHH
Q 013095 41 LSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIF 120 (449)
Q Consensus 41 ~~vi~P~s~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~ 120 (449)
..+|+|++++++.||.++++ +.++.++++|+. .+|. +......+.+++.++|++|++
T Consensus 51 ~~ii~P~~~~~~~Wd~~~~~------------~~~y~~~~~p~~----------~~F~-~~~~~~~~~~~d~i~~~~F~i 107 (823)
T PLN03192 51 GWIISPMDSRYRWWETLMVV------------LVAYSAWVYPFE----------VAFL-NASPKRGLEIADNVVDLFFAV 107 (823)
T ss_pred CeEECCCCcHHHHHHHHHHH------------HHHHHHHHHHHH----------HHee-CCCCCCCeeeHHHHHHHHHHH
Confidence 67999999999999998888 778887777753 3332 111223567899999999999
Q ss_pred HHhhhcccceeccccCCCceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhhHHhHhhHHHHHHHHHHHH
Q 013095 121 YITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVL 199 (449)
Q Consensus 121 DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~~llrl~rl~r~l~ 199 (449)
||+++|+|||+|+ ++|.+|.||++|++||+|+|| +|++|++|++.+..... ......... +++|++|++| +.
T Consensus 108 Di~l~f~~ay~d~--~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~~~~~~~~---~~l~llrl~R-l~ 180 (823)
T PLN03192 108 DIVLTFFVAYIDP--RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GTVKLNLSY---SLLGLLRFWR-LR 180 (823)
T ss_pred HHHhheeEEEEeC--CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CCccchHHH---HHHHHHHHHH-HH
Confidence 9999999999875 567899999999999999999 99999999987643221 111111122 3333333333 23
Q ss_pred Hhhhhhhc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCccceeccCCCCCcccc
Q 013095 200 RMIRIYPW-TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFL 278 (449)
Q Consensus 200 Rl~r~~~l-~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~~~~~~~~~~~~~sW~ 278 (449)
|+.+++.- .........+.+.++.++.+++++||+||+||+++-.. +..+.+|+
T Consensus 181 ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~-------------------------~~~~~~Wi 235 (823)
T PLN03192 181 RVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY-------------------------PHQGKTWI 235 (823)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------------CCCCCchH
Confidence 33333321 01111112233444455566778999999999998210 12346888
Q ss_pred cccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHH
Q 013095 279 NEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLF 358 (449)
Q Consensus 279 ~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~ 358 (449)
.... ++ ..+.+++.+|++|+|||++|||||||||++|.|+.|+++++++|++|+++|||
T Consensus 236 ~~~~-------------------~~--~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~ 294 (823)
T PLN03192 236 GAVI-------------------PN--FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAY 294 (823)
T ss_pred HHhh-------------------hc--cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHH
Confidence 5311 00 12578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHH
Q 013095 359 LIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCL 438 (449)
Q Consensus 359 iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~ 438 (449)
+||+|++++.+.++++.+|+++++.+++||+++++|++||+||++|++|+|+. ++.++++++++||++||.+|..+++.
T Consensus 295 ~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~ 373 (823)
T PLN03192 295 LIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFL 373 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 45789999999999999999999999
Q ss_pred hHccccCCCCC
Q 013095 439 DLLKNVSPLSF 449 (449)
Q Consensus 439 ~~l~~vplF~n 449 (449)
++++++|+|++
T Consensus 374 ~~l~~~~lF~~ 384 (823)
T PLN03192 374 PVVEKVYLFKG 384 (823)
T ss_pred HHHhhCcchhc
Confidence 99999999985
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-52 Score=413.27 Aligned_cols=350 Identities=17% Similarity=0.246 Sum_probs=273.4
Q ss_pred ccccCccchhhhhcceEEEeecCCCCccchhhhhhhheeecceeeEEEeecCCcceEEecCcccchhhhHHHHHHHHHHH
Q 013095 41 LSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIF 120 (449)
Q Consensus 41 ~~vi~P~s~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~ 120 (449)
|-+|.-.+.|+..||=++++ +.||.++++|++++|.........|.++|.++|++|++
T Consensus 207 PHIiLHYcaFKt~WDWvIL~----------------------LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~v 264 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILI----------------------LTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFV 264 (971)
T ss_pred CeEEEeeehhhhHHHHHHHH----------------------HHHHHHheeeeeeeecccccCceeEEEecchhhhhhhh
Confidence 45677788999999955444 45788888888888876665566889999999999999
Q ss_pred HHhhhcccceeccccCCCceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhhHHhHhhHHHHHHHHHHHH
Q 013095 121 YITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVL 199 (449)
Q Consensus 121 DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~~llrl~rl~r~l~ 199 (449)
||++||+|.|+.| .|++|.||+.|+.+|+|+|| +|++||+|+|.+..+-... .+ .-.....|+.+||+| +-
T Consensus 265 DIvLNFHTTFVGP---gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--eg--I~SLFSaLKVVRLLR-LG 336 (971)
T KOG0501|consen 265 DIVLNFHTTFVGP---GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EG--IGSLFSALKVVRLLR-LG 336 (971)
T ss_pred hhhhhcceeeecC---CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--cc--HHHHHHHHHHHHHHH-HH
Confidence 9999999999988 99999999999999999999 9999999999876543211 11 111223333334333 33
Q ss_pred HhhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCccceeccCCCCCccccc
Q 013095 200 RMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLN 279 (449)
Q Consensus 200 Rl~r~~~l~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~~~~~~~~~~~~~sW~~ 279 (449)
|+.|.+. .++ |...+-.++.++.+.+++||+||+||.||-.+.. ....+....++|+-
T Consensus 337 RVaRKLD---~Yl-EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~------------------~~~~n~i~~dsWL~ 394 (971)
T KOG0501|consen 337 RVARKLD---HYL-EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR------------------DEMDNTIQPDSWLW 394 (971)
T ss_pred HHHHHHH---HHH-HhhHHHHHHHHHHHHHHHHHHHHhheeccchhee------------------cccccccccchHHH
Confidence 4444322 122 1222223455668889999999999999932110 00001134568875
Q ss_pred ccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHH
Q 013095 280 EFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFL 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~i 359 (449)
.... +.++.|+|..-. ....+..++....|+.|+|+.++.|||||+|.|.|.|+.|++|++.+|++|.++||-+
T Consensus 395 kLa~---~~~tpY~~~~s~---~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtI 468 (971)
T KOG0501|consen 395 KLAN---DIGTPYNYNLSN---KGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATI 468 (971)
T ss_pred HHHh---hcCCCceeccCC---CceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4322 234555543100 0001225666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHHh
Q 013095 360 IGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLD 439 (449)
Q Consensus 360 ig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~~ 439 (449)
+|+++.|+++|.+...+|.+-++.+.+||+-.++|+.|.+||.+|.--.|..++|.|.+++|+.-|..+|++|..|++++
T Consensus 469 FG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRK 548 (971)
T KOG0501|consen 469 FGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRK 548 (971)
T ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCC
Q 013095 440 LLKNVSPLS 448 (449)
Q Consensus 440 ~l~~vplF~ 448 (449)
..+..|-|+
T Consensus 549 VFnEHpaFR 557 (971)
T KOG0501|consen 549 VFNEHPAFR 557 (971)
T ss_pred hhccCccee
Confidence 999999886
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-48 Score=379.23 Aligned_cols=287 Identities=19% Similarity=0.338 Sum_probs=227.7
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhh-c-cccccccccchhhhhhhccCCch
Q 013095 102 KLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSG 179 (449)
Q Consensus 102 ~~~~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlis~lP~~~i~~~~~~~~~~~ 179 (449)
.....|..+|+++|++|++||+++.+||| .++|.+|.|-++.++||+.+. | +|++|.+|+|++..+.. .
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gy----leqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~-----~ 96 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGY----LEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG-----S 96 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-----c
Confidence 33457899999999999999999999999 789999999999999999875 8 99999999998765431 1
Q ss_pred hhHHhHhhHHHHHHHHHHHHHhhhhhhccccchhhhhHHHH--HHHHH-HHHHHHHHHHHHHHhHhhhhhhHHHHHhhhc
Q 013095 180 LKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIA--AFNLL-LYVLASHVFGALWYFSAIERQTECWKKACLF 256 (449)
Q Consensus 180 ~~~l~~~~llrl~rl~r~l~Rl~r~~~l~~~~~~~~~~~~~--~~~l~-~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~ 256 (449)
.. +.|+.||+| +.|+++.+..+. ..+.+-++ +.+|+ ..+++.||.||++|+++....
T Consensus 97 ~~------~~r~nRllk-~yRl~~F~~rTe---trT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g---------- 156 (536)
T KOG0500|consen 97 AS------LERLNRLLK-IYRLFEFFDRTE---TRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIG---------- 156 (536)
T ss_pred ch------HHHHHHHHH-HHHHHHHHHHhc---cccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcC----------
Confidence 11 122223232 223333332211 11112121 22333 456789999999999983211
Q ss_pred CCCCCCccceeccCCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccC
Q 013095 257 NNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTS 336 (449)
Q Consensus 257 ~~~~c~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p 336 (449)
-..++|....-. +..| +.....++.++|++|+||+..||||+|- ..+|
T Consensus 157 ---------------~~~d~wvY~~i~-----d~~~-----------~~c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P 204 (536)
T KOG0500|consen 157 ---------------FTTDDWVYPKIN-----DPEF-----------ATCDAGNLTREYLYSLYWSTLTLTTIGE-QPPP 204 (536)
T ss_pred ---------------ccccccccCCcc-----Cccc-----------cccchhHHHHHHHHHHHHHhhhhhhccC-CCCC
Confidence 124557754210 0111 0011245889999999999999999997 7889
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 013095 337 SNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTID 416 (449)
Q Consensus 337 ~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~ 416 (449)
.++.|.+|.|+-.++|+++||.|+|+++++++++++.+.+||++||.+++||+.|++|..||.||.+||+|.|.+++..|
T Consensus 205 ~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~D 284 (536)
T KOG0500|consen 205 VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVD 284 (536)
T ss_pred CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHhHccccCCCCC
Q 013095 417 VESSLSILPKELRRNIKRELCLDLLKNVSPLSF 449 (449)
Q Consensus 417 e~~il~~Lp~~Lr~eI~~~~~~~~l~~vplF~n 449 (449)
|+++++.||+.|++||+.++|.+.++||++|++
T Consensus 285 Eeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ 317 (536)
T KOG0500|consen 285 EEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQD 317 (536)
T ss_pred HHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHh
Confidence 999999999999999999999999999999974
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-39 Score=320.06 Aligned_cols=318 Identities=15% Similarity=0.248 Sum_probs=252.2
Q ss_pred cccccCccc-hhhhhcceEEEeecCCCCccchhhhhhhheeecceeeEEEeecCCcceEEecCcccchhhhHHHHHHHHH
Q 013095 40 ELSDKNCLL-KALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLY 118 (449)
Q Consensus 40 ~~~vi~P~s-~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~f 118 (449)
.+..|||.. +++..|-.++.+ .-.+.++++|+-..+|..++.+. -.|++.|+++|+++
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtl------------af~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIY 274 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTL------------AFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIY 274 (815)
T ss_pred CCcccCcccchHHHHHHHHHHH------------HHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHH
Confidence 378899999 999999766555 55667778888777776655432 26899999999999
Q ss_pred HHHHhh-hcccceeccccCCCceecChHHHHHHhhhhh-c-cccccccccchhhhhhhccCCchhhHHhHhhHHHHHHHH
Q 013095 119 IFYITP-QLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLI 195 (449)
Q Consensus 119 ~~DI~l-~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~~llrl~rl~ 195 (449)
++||++ +-|.-| ...|.+|.|.+..++||+++. | +|++|++|+|+++..+. .....+..|.|++..++
T Consensus 275 llDmlf~q~Rl~f----vrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----~~p~wR~~R~lK~~sF~ 345 (815)
T KOG0499|consen 275 LLDMLFIQPRLQF----VRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----FNPMWRANRMLKYTSFF 345 (815)
T ss_pred HHHHhhhhhhhee----eeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----cchhhhhhhHHHHHHHH
Confidence 999985 566677 458999999999999999885 9 99999999998876542 12233455555554443
Q ss_pred HHHHHhhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCccceeccCCCCCc
Q 013095 196 QFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNY 275 (449)
Q Consensus 196 r~l~Rl~r~~~l~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~~~~~~~~~~~~~ 275 (449)
-+..++-+++. ..+ ..+.+..+-.++++.|..||++|..+-.. .-+.+
T Consensus 346 e~~~~Le~i~s--~~y-----~~RV~rT~~YmlyilHinacvYY~~Sayq-------------------------glG~~ 393 (815)
T KOG0499|consen 346 EFNHHLESIMS--KAY-----IYRVIRTTGYLLYILHINACVYYWASAYQ-------------------------GLGTT 393 (815)
T ss_pred HHHHHHHHHhc--chh-----hhhhHHHHHHHHHHHhhhHHHHHHHHhhc-------------------------ccccc
Confidence 31112222211 111 11222233345678899999999877111 01245
Q ss_pred ccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHH
Q 013095 276 EFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVL 355 (449)
Q Consensus 276 sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~ 355 (449)
-|+.. +-...|++|+|||+.|++|+| |...|.|..|.+|..+.-+.|+++
T Consensus 394 rWVyd-----------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFv 443 (815)
T KOG0499|consen 394 RWVYD-----------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFV 443 (815)
T ss_pred eeEEc-----------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHH
Confidence 67632 123479999999999999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHH
Q 013095 356 MLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRE 435 (449)
Q Consensus 356 fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~ 435 (449)
||.+||.|-.++.+.++.+++|++.|+..-.||+..+||.+.|+||+.+|+|.|+.++..||.++++.||..||.+++..
T Consensus 444 FslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~ 523 (815)
T KOG0499|consen 444 FSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAID 523 (815)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHccccCCCCC
Q 013095 436 LCLDLLKNVSPLSF 449 (449)
Q Consensus 436 ~~~~~l~~vplF~n 449 (449)
.+-.++.||.+|+.
T Consensus 524 V~y~~lSKVqLFq~ 537 (815)
T KOG0499|consen 524 VNYSILSKVQLFQG 537 (815)
T ss_pred eehhhhhHHHHhhh
Confidence 99999999999973
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.8e-14 Score=144.80 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
.--.+++||++|||||||||++|.|...++++..+.+.|+++.|+-|..|-+-++..
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMY 433 (477)
T ss_pred cccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHH
Confidence 334588999999999999999999999999999999999999999877665544433
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.46 E-value=2.2e-13 Score=124.80 Aligned_cols=189 Identities=20% Similarity=0.224 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhh-c-cccccccccchhhhhhhccCCchhhHHhHh
Q 013095 109 GLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGLKILSGM 186 (449)
Q Consensus 109 ~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~ 186 (449)
++|.+++++|.+|+++++++... . +++|++++ . +|+++++|..........+..+.....+..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~----~-----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF----K-----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIF 65 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----G------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc----H-----------HHHHhcChhhcccccccccccccccccccccccccceEEEE
Confidence 46889999999999999986541 1 78999976 5 999999998654322211100000122333
Q ss_pred hHHHHHHHHHHHHHhhhhhhccccchhh---hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCc
Q 013095 187 MLLKYSVLIQFVLRMIRIYPWTLGKLGE---ATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTR 263 (449)
Q Consensus 187 ~llrl~rl~r~l~Rl~r~~~l~~~~~~~---~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~ 263 (449)
+++|+.|++ |+.|..+. .+.... .........++.++++.|..||+++.+.-.....|. .
T Consensus 66 ~~l~~~R~l----~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~-----------~- 128 (200)
T PF00520_consen 66 RLLRLLRLL----RLLRRFRS-LRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC-----------D- 128 (200)
T ss_dssp HHHHHHHHH----HHHHTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------------
T ss_pred Eeecccccc----cccccccc-ccccccccccccccccccccccccccccccchhheeccccccccc-----------c-
Confidence 334333333 34443331 111111 111122233345667889999998887632211000 0
Q ss_pred cceeccCCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCC-----C
Q 013095 264 GSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSS-----N 338 (449)
Q Consensus 264 ~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~-----~ 338 (449)
..+-.. .. ....+..+.|..|+||+++++|+.|+||+.|. +
T Consensus 129 -----------~~~~~~---------~~--------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~ 174 (200)
T PF00520_consen 129 -----------PTWDSE---------ND--------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARS 174 (200)
T ss_dssp -------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTS
T ss_pred -----------cccccc---------cc--------------cccccccccccccccccccccccCCccccccccccccc
Confidence 000000 00 01334566899999999999999999999987 8
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHH
Q 013095 339 AWENFFV-ILVTISGLVLMLFLIGNI 363 (449)
Q Consensus 339 ~~E~i~~-i~~mi~G~~~fa~iig~i 363 (449)
..|.++. ++..+.+.++++.++|.|
T Consensus 175 ~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 175 WLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999 556666678899998875
No 8
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.23 E-value=7e-11 Score=93.01 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQ 368 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~ 368 (449)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5888999999999999999999999999999999999999999999999998875
No 9
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.19 E-value=6.7e-12 Score=120.97 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNI 363 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i 363 (449)
.--.|+|||++|||||||||..|.|...+++..++.+.|++-.|.-+-.|
T Consensus 393 SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 393 SIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred cCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 34458999999999999999999999999999999999999888765544
No 10
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.6e-09 Score=108.53 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=71.9
Q ss_pred hhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhc
Q 013095 311 FPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPI 390 (449)
Q Consensus 311 ~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~ 390 (449)
-+.-|..|++|++.|+|||||||.+|.|...++.+....++|..+||.--|.+++=++-+-+ ++. .-++|-++
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~-----RQKHf~rr 338 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQH-----RQKHFNRR 338 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHH-----HHHHHHhh
Confidence 45679999999999999999999999999999999999999999999988888776643321 111 12466677
Q ss_pred CCCCHHHHHHHHHHHH
Q 013095 391 QKLSRSVQQQLKIYQR 406 (449)
Q Consensus 391 ~~lp~~L~~rV~~y~~ 406 (449)
++.-..|-+-.-+||.
T Consensus 339 r~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYA 354 (654)
T ss_pred cchHHHHHHHHHHHHh
Confidence 7777888888877765
No 11
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.1e-09 Score=104.74 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 013095 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFL----IGNIQIYL 367 (449)
Q Consensus 312 ~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~i----ig~i~~il 367 (449)
++.--.++|+.++||||.||||.+|.|...++|.-++-+.|+++.|.- +.|.+.|-
T Consensus 354 FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 354 FTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred cccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 334456899999999999999999999999999999999999988864 45555554
No 12
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.50 E-value=3.8e-07 Score=93.09 Aligned_cols=129 Identities=11% Similarity=0.189 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCC
Q 013095 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQK 392 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~ 392 (449)
-.|..|+|+-++||+||||||+...|...+.|.++.++.|..+||--+-+|..++.+-++-.-+|+..--. ++-..--+
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgk-khivvcgh 365 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK-KHIVVCGH 365 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCC-eeEEEecc
Confidence 36999999999999999999999999999999999999999999999999988886654333333321000 00000001
Q ss_pred CCHHHHHHHHHHHHH-HHhcCCCCC-HHHHHhhCcHHHHHHHHHHHHHhHccccCCCC
Q 013095 393 LSRSVQQQLKIYQRY-IWRKPDTID-VESSLSILPKELRRNIKRELCLDLLKNVSPLS 448 (449)
Q Consensus 393 lp~~L~~rV~~y~~y-~~~~~~~~~-e~~il~~Lp~~Lr~eI~~~~~~~~l~~vplF~ 448 (449)
+ .-+.|.+|++- .++....+| |--.|...||+|--| .+++....+|.||+
T Consensus 366 i---tyesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffq 417 (1103)
T KOG1420|consen 366 I---TYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQ 417 (1103)
T ss_pred e---eHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEec
Confidence 1 11233344332 222222344 334567777777554 45566666777765
No 13
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.41 E-value=6.9e-07 Score=91.21 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013095 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIY 366 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~i 366 (449)
..+..|+||++.|+|||||||+.|.+...+++++++++.|+.+|++.++.+...
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999887653
No 14
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.12 E-value=6.6e-05 Score=75.61 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhc
Q 013095 311 FPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPI 390 (449)
Q Consensus 311 ~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~ 390 (449)
...-|+.|++....|..++||||++|.|...+..+++.-++|.++-|.+++-++--+. ..+--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4456999999999999999999999999999999999999999999999998865443 22223456677776
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013095 391 QKLSRSVQQQLKIYQRYIW 409 (449)
Q Consensus 391 ~~lp~~L~~rV~~y~~y~~ 409 (449)
.++.+++++-..+=++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655544444444
No 15
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.84 E-value=0.00014 Score=72.77 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhhhcccccCCC--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095 313 QKFLHCFRWGLRNLSCFGQNL--QTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGD--i~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 369 (449)
..+..+|++++.|+||+|||. ++|....-.+.+++-+++|.++.|+++|-+-+=++.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368889999999999999998 677778888888888999999999999987554443
No 16
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.77 E-value=2.8e-05 Score=79.88 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
-+..|+|++++++||+|||++.|.|...++++|+..++|.-++..++++++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999999999999999999999988754
No 17
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.00089 Score=64.88 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNI 363 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i 363 (449)
+..-|||+|.+.+||+|||-.+|.|...++|+|+-.++|+-+--..+.++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 56679999999999999999999999999999999999976544444443
No 18
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.0078 Score=58.53 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcccccCCCccCC-------ChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSS-------NAWENF-FVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~-------~~~E~i-~~i~~mi~G~~~fa~iig~i~~il~~~~~ 372 (449)
.|..|+|+.+.|+||+|+||.+|- +..+++ ++.+.+++|+.+++-.++-+.--+..++.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 599999999999999999999874 333444 55567889999988888877665555544
No 19
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=95.97 E-value=0.00089 Score=51.91 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.1
Q ss_pred ccccCccchhhhhcceEEEeecCCCCccchhhhhhhheeecce
Q 013095 41 LSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPL 83 (449)
Q Consensus 41 ~~vi~P~s~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl 83 (449)
.-+|||.|+++.+||.++++ ++++.++++|+
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~------------~~~~~~~~iP~ 66 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLI------------LLLYNLIIIPF 66 (77)
T ss_pred CeEEcCCccHHHHHHHHHHH------------HHHHHHHHHhh
Confidence 46999999999999999888 77777777774
No 20
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.0031 Score=64.71 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWEN--------FFVILVTISGLVLMLFLI 360 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~--------i~~i~~mi~G~~~fa~ii 360 (449)
-|+.|+|+++.++||+|+||++|.+...+ ....+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 58889999999999999999999998866 577788888988888777
No 21
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.13 Score=51.48 Aligned_cols=54 Identities=19% Similarity=0.419 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhcccccCCCccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTS--SNAWENFFVILVTISGLVLMLFLIGNIQIYL 367 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p--~~~~E~i~~i~~mi~G~~~fa~iig~i~~il 367 (449)
....||-+++-|=||+|||-=.+ .-+.-.+..++-+++|+++-|+++|.+-+=+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667889999999999996544 3444455555668999999999999874433
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=92.28 E-value=0.55 Score=42.72 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhc--CCCCCHHHHHhhC--cHHHHHHHHHHH
Q 013095 378 TLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRK--PDTIDVESSLSIL--PKELRRNIKREL 436 (449)
Q Consensus 378 ~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~--~~~~~e~~il~~L--p~~Lr~eI~~~~ 436 (449)
++-+++++++++ ++|++-++++.+||+-+..+ .+|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 344577888886 59999999999999988875 3567899999998 777777776543
No 23
>COG4709 Predicted membrane protein [Function unknown]
Probab=91.72 E-value=0.72 Score=41.72 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcC--CCCCHHHHHhhC--cHHHHHHHHHHHHHhHcc
Q 013095 379 LRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKP--DTIDVESSLSIL--PKELRRNIKRELCLDLLK 442 (449)
Q Consensus 379 ~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~--~~~~e~~il~~L--p~~Lr~eI~~~~~~~~l~ 442 (449)
+-++++++|++ ++|++.++++..||+-++.+. .|.+|+|+..+| |.++-.|+..+.-.+-.+
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~ 70 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEE 70 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHh
Confidence 34567777775 799999999999999887653 466899999988 777777777665444443
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=90.04 E-value=0.096 Score=54.25 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHH
Q 013095 316 LHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVL 355 (449)
Q Consensus 316 l~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~ 355 (449)
..|+|+.++|.+||||||-.|.-....++.++++-+..++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 4588999999999999999998877777665544444333
No 25
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.58 E-value=9.2 Score=43.08 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhcc-cceeccccCCCceecChHHHHHHhhhh-hc-cccc
Q 013095 106 TATGLRSLFDFLYIFYITPQLL-ADLVASVNAKHEANNSLKSLMKFWLGS-LF-VDLP 160 (449)
Q Consensus 106 ~~~~~~~~~D~~f~~DI~l~F~-t~y~d~~~~~g~~V~d~~~Ia~~Ylk~-~F-~Dli 160 (449)
.+..-|+++-.+|+.++.++-. .|.+ -| -..|+++ |= +|.+
T Consensus 1157 FltlsnyIFtaIfV~Em~lKVVALGl~-----fg---------e~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1157 FLTLSNYIFTAIFVVEMTLKVVALGLY-----FG---------EQAYLRSSWNVLDGF 1200 (1956)
T ss_pred EEEecchHHHHHHHHHHHHHHHhhhhc-----cc---------hHHHHHHHHHhhhHH
Confidence 3445568999999999998754 3431 23 2478976 55 8864
No 26
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=86.14 E-value=1.5 Score=36.33 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc----------CCCCCHHHHHhhCcHHHHHHHHHH
Q 013095 392 KLSRSVQQQLKIYQRYIWRK----------PDTIDVESSLSILPKELRRNIKRE 435 (449)
Q Consensus 392 ~lp~~L~~rV~~y~~y~~~~----------~~~~~e~~il~~Lp~~Lr~eI~~~ 435 (449)
-||+++|..|...+.-.-.. ....|...++..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999998754321 122456789999999999999864
No 27
>PLN03223 Polycystin cation channel protein; Provisional
Probab=85.87 E-value=20 Score=42.01 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=30.2
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHhcCCCC---------CHHHHHhhCcHHHHHHHHHHHHHhHccc
Q 013095 386 EHMPIQKLSRSVQQQLKIYQRYIWRKPDTI---------DVESSLSILPKELRRNIKRELCLDLLKN 443 (449)
Q Consensus 386 ~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~---------~e~~il~~Lp~~Lr~eI~~~~~~~~l~~ 443 (449)
.+.....+|+. ||++-++ .|+.+..- +.+.++..|.++|-++=...+.++.+..
T Consensus 1453 g~~~~~~i~~~---~~~~~lr-~w~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~ 1515 (1634)
T PLN03223 1453 GWFYKNHIPEA---RVRRQLR-IWKGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIE 1515 (1634)
T ss_pred hhcccccCCcH---HHHHHHH-HhcCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 34455677764 4444443 46532211 1245777788877777776666665543
No 28
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=79.37 E-value=13 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=26.8
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccChH---HHHHHHHHHHhhhhc
Q 013095 341 ENFFVI---LVTISGLVLMLFLIGNIQIYLQTKATRPK---EMTLRMQEMNEHMPI 390 (449)
Q Consensus 341 E~i~~i---~~mi~G~~~fa~iig~i~~il~~~~~~~~---~~~~~l~~i~~ym~~ 390 (449)
..++++ ...+++.+.|+. -|-.++.+.+.+++ +.++|+|.+-+.+++
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 344555 333444444443 35555666554443 589999998877653
No 29
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.47 E-value=80 Score=35.15 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC----CCCCHHHHHhhCcHHHHHHH
Q 013095 391 QKLSRSVQQQLKIYQRYIWRKP----DTIDVESSLSILPKELRRNI 432 (449)
Q Consensus 391 ~~lp~~L~~rV~~y~~y~~~~~----~~~~e~~il~~Lp~~Lr~eI 432 (449)
+++|++||+.|.+|+-...-++ ++.|+ ++|+.|...||.+.
T Consensus 402 ~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~-~~L~al~~rlk~~~ 446 (727)
T KOG0498|consen 402 QSLPKDLRRDIKRHLCLDLVRKVPLFAGMDD-GLLDALCSRLKPEY 446 (727)
T ss_pred HhCCHHHHHHHHHHHhHHHHhhCchhhcCCH-HHHHHHHHHhhhhc
Confidence 6899999999999987655432 33333 67777777777664
No 30
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.47 E-value=14 Score=40.66 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=55.0
Q ss_pred ccccCCCccCCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCh-HHHHHHHHHHHhhhhcCCCCHHHHH
Q 013095 327 SCFGQNLQTSSNAW------ENFFVILVTISGLVLMLFLIGNIQIYLQTKATRP-KEMTLRMQEMNEHMPIQKLSRSVQQ 399 (449)
Q Consensus 327 ttvGyGDi~p~~~~------E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~-~~~~~~l~~i~~ym~~~~lp~~L~~ 399 (449)
.|+|+||....... -.+|.+++.++.+.++-++|+-|++...+..+.+ ++++.+-. ..--|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 58999998764333 3456666777888888899999999988877666 55554433 3456778999999999
Q ss_pred HHH
Q 013095 400 QLK 402 (449)
Q Consensus 400 rV~ 402 (449)
|-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 843
No 31
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=68.39 E-value=13 Score=30.67 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcC---------C-CC---CHHHHHhhCcHHHHHHHHHHHHHh
Q 013095 392 KLSRSVQQQLKIYQRYIWRKP---------D-TI---DVESSLSILPKELRRNIKRELCLD 439 (449)
Q Consensus 392 ~lp~~L~~rV~~y~~y~~~~~---------~-~~---~e~~il~~Lp~~Lr~eI~~~~~~~ 439 (449)
.||+++|.+|..-+...-... . .. -..++|..||++||.||..+-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999965443321100 0 00 035899999999999999876543
No 32
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=66.33 E-value=10 Score=32.53 Aligned_cols=76 Identities=8% Similarity=0.105 Sum_probs=50.6
Q ss_pred ChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhh
Q 013095 310 DFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMP 389 (449)
Q Consensus 310 ~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~ 389 (449)
........+++..+.+++. +-++..|.+...+++.++..+++.++.+.--|++++++... +++..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHH
Confidence 3455677788888888876 44689999999999999999999999999999999988643 22233444444444
Q ss_pred cC
Q 013095 390 IQ 391 (449)
Q Consensus 390 ~~ 391 (449)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 33
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=58.46 E-value=17 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHhhhhcCCCC-----HHHHHHHHHHH
Q 013095 380 RMQEMNEHMPIQKLS-----RSVQQQLKIYQ 405 (449)
Q Consensus 380 ~l~~i~~ym~~~~lp-----~~L~~rV~~y~ 405 (449)
+..+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 357888999999998 78999998874
No 34
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=57.05 E-value=1.1e+02 Score=26.87 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=28.4
Q ss_pred CChhhHHHHHHHHhhhhcccccCCCccCCChhh-----HHHHHHHHHHHHHHHHHHHHH
Q 013095 309 PDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWE-----NFFVILVTISGLVLMLFLIGN 362 (449)
Q Consensus 309 ~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E-----~i~~i~~mi~G~~~fa~iig~ 362 (449)
+........++-.|+.++...--|+--+..... ...+.+..++..++.++++.+
T Consensus 136 ~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~n 194 (200)
T PF00520_consen 136 DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLN 194 (200)
T ss_dssp -SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHH
Confidence 444555666666777666655555555555544 334444444444555544443
No 35
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=44.35 E-value=57 Score=28.57 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHhhhh
Q 013095 346 ILVTISGLVLMLFLIGNIQIYLQTKA-------------TRPKEMTLRMQEMNEHMP 389 (449)
Q Consensus 346 i~~mi~G~~~fa~iig~i~~il~~~~-------------~~~~~~~~~l~~i~~ym~ 389 (449)
+++.++|+.++|++++.+.+.-...+ -..++|+++++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 57789999999999987644321111 135679988888875554
No 36
>PHA03029 hypothetical protein; Provisional
Probab=44.30 E-value=82 Score=24.10 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHH
Q 013095 338 NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTL 379 (449)
Q Consensus 338 ~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~ 379 (449)
++.|.+|-++..++=.++.-.+||-+-..+-+.++-+....+
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai~q 43 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAIDQ 43 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888777777888887777776654444333
No 37
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.91 E-value=1.6e+02 Score=35.97 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=30.0
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhh-hc-cccccc
Q 013095 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGS-LF-VDLPAV 162 (449)
Q Consensus 105 ~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~-~F-~Dlis~ 162 (449)
..+.+.|+++-.+|.+.+++.-- +| |-. -|.++ |. +|++-.
T Consensus 872 ~~L~y~D~~Ft~iFt~Em~lK~i-a~-------Gf~---------~y~rn~w~~lDf~Vv 914 (1592)
T KOG2301|consen 872 GILEYADYIFTYIFTFEMLLKWI-AY-------GFF---------FYFRNAWNWLDFVVV 914 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-Hh-------HHH---------HHHhhHHhhhhHHHh
Confidence 45678899999999999999864 33 211 19987 56 998754
No 38
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=41.92 E-value=25 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q 013095 390 IQKLSRSVQQQLKIYQRYIWRK 411 (449)
Q Consensus 390 ~~~lp~~L~~rV~~y~~y~~~~ 411 (449)
..++|.+|++.|.+|.+|.-++
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998764
No 39
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=39.96 E-value=1.4e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhcC-CCCHHHHHHHHHHHHHHHhcCCCCC--HHHHHhhCcHHHHHHHHHHHHH
Q 013095 378 TLRMQEMNEHMPIQ-KLSRSVQQQLKIYQRYIWRKPDTID--VESSLSILPKELRRNIKRELCL 438 (449)
Q Consensus 378 ~~~l~~i~~ym~~~-~lp~~L~~rV~~y~~y~~~~~~~~~--e~~il~~Lp~~Lr~eI~~~~~~ 438 (449)
.+..+.++++|.+. +++++-++++++.++..-....... -+.+-..++++.|.++...+.+
T Consensus 18 ~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 18 EEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556788888884 9999999999999876554332222 2345556678888888776654
No 40
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=38.69 E-value=1.1e+02 Score=31.04 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhh
Q 013095 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHM 388 (449)
Q Consensus 312 ~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym 388 (449)
.--|+.++=+++..+.+++-++....-..-..+++++.+++++.+-+.|..++..++--+--.+-.++-.+.+++..
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~ 174 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLY 174 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhh
Confidence 33588888899988888887665333333367777788888888889998888766543333333333334444443
No 41
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=38.05 E-value=28 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcC
Q 013095 390 IQKLSRSVQQQLKIYQRYIWRKP 412 (449)
Q Consensus 390 ~~~lp~~L~~rV~~y~~y~~~~~ 412 (449)
-++||+++++.|.+|.+|...+.
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999987654
No 42
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=37.35 E-value=38 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=16.0
Q ss_pred HHHhhCcHHHHHHHHHHH
Q 013095 419 SSLSILPKELRRNIKREL 436 (449)
Q Consensus 419 ~il~~Lp~~Lr~eI~~~~ 436 (449)
++++.||..|+.|+..++
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 689999999999998765
No 43
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=35.51 E-value=1.5e+02 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 013095 344 FVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQE 383 (449)
Q Consensus 344 ~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~ 383 (449)
++.+..+..++....+.+.+.++-++...+-+++|.+-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666666666665555555555444
No 44
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=34.75 E-value=41 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=18.9
Q ss_pred HHHHHhhhhcCCCC-----HHHHHHHHHHH
Q 013095 381 MQEMNEHMPIQKLS-----RSVQQQLKIYQ 405 (449)
Q Consensus 381 l~~i~~ym~~~~lp-----~~L~~rV~~y~ 405 (449)
..++++.++.+++| .+|++|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35678888888887 67888887763
No 45
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=30.60 E-value=94 Score=22.11 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=21.8
Q ss_pred HHHHHhhhhcCCCC-------HHHHHHHHHHHHHHHhcCCCCCHHHHHh
Q 013095 381 MQEMNEHMPIQKLS-------RSVQQQLKIYQRYIWRKPDTIDVESSLS 422 (449)
Q Consensus 381 l~~i~~ym~~~~lp-------~~L~~rV~~y~~y~~~~~~~~~e~~il~ 422 (449)
+..+..|.+..+++ ++|-..|+++|. +..++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 45678888877777 566777777764 34478887764
No 46
>PRK06771 hypothetical protein; Provisional
Probab=30.51 E-value=2.2e+02 Score=22.97 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHH
Q 013095 357 LFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKI 403 (449)
Q Consensus 357 a~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~ 403 (449)
-|+...++.+...++.+....+.+++.+.+.+.--...+++.+++++
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 34555666777777777778888888887777555553334444444
No 47
>PRK07668 hypothetical protein; Validated
Probab=27.29 E-value=2e+02 Score=27.73 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHH-HHHHHHHhc-CCCCCHHHHHhhCcHHHHHHHHHH
Q 013095 377 MTLRMQEMNEHMPIQKLSRSVQQQLK-IYQRYIWRK-PDTIDVESSLSILPKELRRNIKRE 435 (449)
Q Consensus 377 ~~~~l~~i~~ym~~~~lp~~L~~rV~-~y~~y~~~~-~~~~~e~~il~~Lp~~Lr~eI~~~ 435 (449)
-++-+.+++.|++.+++|++=++++. ++.++..+. ++|.++++++.+=|.+.-+|+...
T Consensus 6 Neefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~ 66 (254)
T PRK07668 6 GRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE 66 (254)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc
Confidence 34556778899999999988777765 555555443 467889999999665556666554
No 48
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.81 E-value=1e+03 Score=27.01 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHH
Q 013095 391 QKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCL 438 (449)
Q Consensus 391 ~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~ 438 (449)
.++|+.||.+|..++....- ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 47899999999887654332 22357778888888887776643
No 49
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=25.49 E-value=1.6e+02 Score=25.20 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=29.5
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCc
Q 013095 380 RMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILP 425 (449)
Q Consensus 380 ~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp 425 (449)
+...++.|-.++-+=+-||.+=.+++--.|.+++. .|.+|+++.|
T Consensus 61 rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMKdVP 105 (146)
T KOG3300|consen 61 RRLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMKDVP 105 (146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHccCC
Confidence 33456666667777777777766666666655432 4677888877
No 50
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=24.49 E-value=58 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 013095 345 VILVTISGLVLMLF 358 (449)
Q Consensus 345 ~i~~mi~G~~~fa~ 358 (449)
+|+..+.|..++|+
T Consensus 5 ~i~L~l~ga~f~~f 18 (33)
T PF10855_consen 5 AIILILGGAAFYGF 18 (33)
T ss_pred eehhhhhhHHHHHH
Confidence 45677778888875
No 51
>KOG4560 consensus Transcription factor IIIC box B binding (alpha) subunit [Transcription]
Probab=23.76 E-value=73 Score=36.53 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred hhhc--cccccccccchhhhhhhccCCchh-hHHhHhhHHHHHHHHHHHHHhhh
Q 013095 153 GSLF--VDLPAVFPLPQLVILSIIPRMSGL-KILSGMMLLKYSVLIQFVLRMIR 203 (449)
Q Consensus 153 k~~F--~Dlis~lP~~~i~~~~~~~~~~~~-~~l~~~~llrl~rl~r~l~Rl~r 203 (449)
+||| +|+++++|+.+++.....++.-.. -....+.-++=-.+.+|+|+=+|
T Consensus 721 rGWfm~lD~LaaLPLSiFili~~V~n~~D~~Ll~~LNDP~K~HllIg~LPd~IR 774 (1897)
T KOG4560|consen 721 RGWFMFLDALAALPLSLFMLICRVENEADDDLLLQLNDPIKQHLLIGQLPDEIR 774 (1897)
T ss_pred ccHHHHHHHHHhccHHHHHhhhccccccCchHHHHhccHHHhhHHHHhcchhhH
Confidence 7898 899999999876654444432111 11122233333334455676666
No 52
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=22.78 E-value=1e+02 Score=31.64 Aligned_cols=86 Identities=7% Similarity=0.033 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhhhcccccCC--CccCCChhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccChHHHHH
Q 013095 313 QKFLHCFRWGLRNLSCFGQN--LQTSSNAWENFFVILVTISGLVL-----------MLFLIGNIQIYLQTKATRPKEMTL 379 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyG--Di~p~~~~E~i~~i~~mi~G~~~-----------fa~iig~i~~il~~~~~~~~~~~~ 379 (449)
.....+.+.++++++|.|+. |...-+..-.++.++.|++|..- ++.++..+..-+.+......-+
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~-- 307 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIF-- 307 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEE--
Confidence 34566888899999999985 33334455567777888888543 4444444444443222221111
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHH
Q 013095 380 RMQEMNEHMPIQKLSRSVQQQLKIYQ 405 (449)
Q Consensus 380 ~l~~i~~ym~~~~lp~~L~~rV~~y~ 405 (449)
+.-...+.++++....+..|+
T Consensus 308 -----~~~i~~~~v~~~~~~~~~~~~ 328 (390)
T TIGR00933 308 -----SRRIGGKTIDKAILISVWSFF 328 (390)
T ss_pred -----eEEECCeehHHHHHHHHHHHH
Confidence 122345566666666666554
No 53
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.24 E-value=2.3e+02 Score=19.94 Aligned_cols=43 Identities=21% Similarity=0.589 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCCCC------HHHHHhhCcHHHHHHHH
Q 013095 391 QKLSRSVQQQLKIYQRYIWRK-PDTID------VESSLSILPKELRRNIK 433 (449)
Q Consensus 391 ~~lp~~L~~rV~~y~~y~~~~-~~~~~------e~~il~~Lp~~Lr~eI~ 433 (449)
++||+..-+|+-.|+++.-.- ..|.+ -.+.+.-=|.++|+|+.
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccCC
Confidence 579999999999999986542 23332 23566667888888763
No 54
>PHA01757 hypothetical protein
Probab=22.17 E-value=3.9e+02 Score=20.86 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=30.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q 013095 338 NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMN 385 (449)
Q Consensus 338 ~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~ 385 (449)
+..|-..--+....|.+.-++++|.+.-+-.. ..+.+.|.+.+++++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHHHHHH
Confidence 34455555566677777778888888765543 345566777666654
No 55
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=21.24 E-value=2.7e+02 Score=18.72 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhcC-CCCHHHHHHHHHHHHHHHh
Q 013095 375 KEMTLRMQEMNEHMPIQ-KLSRSVQQQLKIYQRYIWR 410 (449)
Q Consensus 375 ~~~~~~l~~i~~ym~~~-~lp~~L~~rV~~y~~y~~~ 410 (449)
.-|.+=+.++.+||... .+.++++.|+..+++-..+
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 46888889999999865 5789999999999976543
No 56
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=20.51 E-value=99 Score=23.85 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=15.6
Q ss_pred HHHHhhCcHHHHHHHHHHH
Q 013095 418 ESSLSILPKELRRNIKREL 436 (449)
Q Consensus 418 ~~il~~Lp~~Lr~eI~~~~ 436 (449)
.++|..||+++|.||...+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri 48 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI 48 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH
Confidence 5799999999999998776
No 57
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.25 E-value=4.6e+02 Score=20.99 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcccC---hHHHHHHHHHHHhhhhcCCCC
Q 013095 355 LMLFLIGNIQIYLQTKATR---PKEMTLRMQEMNEHMPIQKLS 394 (449)
Q Consensus 355 ~fa~iig~i~~il~~~~~~---~~~~~~~l~~i~~ym~~~~lp 394 (449)
+-+|..++++-=+...+.- .++.++++++.++.++++++.
T Consensus 48 fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 48 FGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3346666666555555544 455566777778888888763
Done!