Query 013095
Match_columns 449
No_of_seqs 235 out of 1551
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:06:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.9 5.4E-22 1.8E-26 186.3 16.8 179 103-369 37-220 (223)
2 2r9r_B Paddle chimera voltage 99.8 2.9E-19 9.8E-24 187.2 11.5 243 104-438 238-490 (514)
3 3beh_A MLL3241 protein; transm 99.7 5.1E-18 1.7E-22 170.1 9.0 94 312-406 159-252 (355)
4 4h33_A LMO2059 protein; bilaye 99.7 3.6E-17 1.2E-21 141.5 7.9 93 314-406 43-135 (137)
5 3vou_A ION transport 2 domain 99.7 8.6E-16 3E-20 134.7 13.5 87 314-400 52-148 (148)
6 2a9h_A Voltage-gated potassium 99.6 3.4E-15 1.2E-19 131.5 11.9 67 312-378 82-148 (155)
7 2ih3_C Voltage-gated potassium 99.6 1.1E-14 3.9E-19 123.2 10.7 59 313-371 60-118 (122)
8 3ukn_A Novel protein similar t 99.5 2E-15 6.8E-20 139.6 1.3 85 364-449 1-85 (212)
9 3eff_K Voltage-gated potassium 99.5 5.5E-14 1.9E-18 121.8 9.5 58 313-370 39-96 (139)
10 2ptm_A Hyperpolarization-activ 99.5 4.2E-14 1.4E-18 129.2 7.7 80 369-449 2-81 (198)
11 3bpz_A Potassium/sodium hyperp 99.5 5.1E-14 1.7E-18 129.2 6.7 81 368-449 2-82 (202)
12 2q67_A Potassium channel prote 99.4 1.3E-12 4.3E-17 109.2 12.3 59 314-372 49-107 (114)
13 2k1e_A Water soluble analogue 99.3 5.5E-13 1.9E-17 109.4 4.7 57 314-370 40-96 (103)
14 3ouf_A Potassium channel prote 99.3 1.7E-11 5.7E-16 99.3 9.2 56 314-369 32-87 (97)
15 3ldc_A Calcium-gated potassium 99.2 1.4E-11 4.6E-16 96.6 7.4 54 314-367 28-81 (82)
16 3pjs_K KCSA, voltage-gated pot 99.2 5.2E-13 1.8E-17 119.2 -1.2 61 313-373 66-126 (166)
17 3rvy_A ION transport protein; 99.1 1.7E-10 5.9E-15 111.7 7.5 59 312-370 178-242 (285)
18 1xl4_A Inward rectifier potass 99.0 5.7E-10 2E-14 108.5 10.7 57 314-370 82-138 (301)
19 1p7b_A Integral membrane chann 99.0 4.8E-10 1.7E-14 110.3 8.8 58 314-371 96-153 (333)
20 3um7_A Potassium channel subfa 99.0 7.6E-10 2.6E-14 107.4 9.2 76 314-395 115-190 (309)
21 2qks_A KIR3.1-prokaryotic KIR 98.9 2.5E-09 8.7E-14 104.8 7.6 58 314-371 78-135 (321)
22 3um7_A Potassium channel subfa 98.8 3.6E-09 1.2E-13 102.7 4.8 62 314-375 224-291 (309)
23 3ukm_A Potassium channel subfa 98.7 1.9E-08 6.5E-13 96.2 7.7 56 314-369 93-148 (280)
24 4gx0_A TRKA domain protein; me 98.7 9.2E-08 3.1E-12 101.3 11.9 54 314-367 51-105 (565)
25 3sya_A G protein-activated inw 98.7 1E-07 3.5E-12 93.6 11.2 57 314-370 91-149 (340)
26 3ukm_A Potassium channel subfa 98.6 2.4E-08 8.2E-13 95.5 3.9 55 314-368 201-262 (280)
27 3spc_A Inward-rectifier K+ cha 98.5 4.5E-07 1.5E-11 89.2 11.3 58 314-371 94-153 (343)
28 1lnq_A MTHK channels, potassiu 98.5 7.1E-09 2.4E-13 102.6 -2.2 57 314-370 45-101 (336)
29 4dxw_A Navrh, ION transport pr 97.7 0.00018 6.1E-09 66.8 11.3 45 105-165 42-88 (229)
30 2kyh_A KVAP, voltage-gated pot 96.3 0.0039 1.3E-07 53.7 5.2 47 105-167 52-98 (147)
31 1ors_C Potassium channel; volt 95.9 0.0076 2.6E-07 50.8 4.7 46 105-167 37-83 (132)
32 3kg2_A Glutamate receptor 2; I 65.3 8.1 0.00028 41.7 6.3 55 314-369 563-617 (823)
33 2rnn_A E3 SUMO-protein ligase 27.5 34 0.0012 27.5 2.4 29 380-408 41-74 (114)
34 2kwv_A RAD30 homolog B, DNA po 27.2 14 0.00047 24.6 0.1 19 417-435 17-35 (48)
35 3euj_B Chromosome partition pr 25.0 7.5 0.00026 32.2 -1.8 44 390-433 4-61 (152)
36 2do1_A Nuclear protein HCC-1; 24.4 46 0.0016 23.0 2.4 28 380-407 14-46 (55)
37 2kvu_A MKL/myocardin-like prot 22.6 64 0.0022 23.8 3.0 29 379-407 29-62 (75)
38 2lh0_A Histone chaperone RTT10 21.8 38 0.0013 24.7 1.6 15 420-434 8-22 (70)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.88 E-value=5.4e-22 Score=186.27 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=121.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhh
Q 013095 103 LAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLK 181 (449)
Q Consensus 103 ~~~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~ 181 (449)
....+..+|.+++++|.+|++++|.++. + +++|+|+ + +|++|++|++..... .. +..
T Consensus 37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~------~----------~~~y~~~-~iiDllailP~~~~~~~----~~-~~~ 94 (223)
T 1orq_C 37 YLVRLYLVDLILVIILWADYAYRAYKSG------D----------PAGYVKK-TLYEIPALVPAGLLALI----EG-HLA 94 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTTS------C----------HHHHHHH-HHHHCTTHHHHHHHHHH----HH-HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccc------c----------HHHHHHH-hHHHHHHHHHHHHHHHH----hc-chh
Confidence 3457889999999999999999999874 1 3799998 9 999999998765321 00 000
Q ss_pred HHhHhhHHHHHHHHHHHHHhhhhhhcccc---chhhhhH-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcC
Q 013095 182 ILSGMMLLKYSVLIQFVLRMIRIYPWTLG---KLGEATW-AIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFN 257 (449)
Q Consensus 182 ~l~~~~llrl~rl~r~l~Rl~r~~~l~~~---~~~~~~~-~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~ 257 (449)
.....|.+|++|++ |++|..+...+ .+.+... .+....++..++..|+.||++|.+.-
T Consensus 95 ~~~~lr~lRllRll----R~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~-------------- 156 (223)
T 1orq_C 95 GLGLFRLVRLLRFL----RILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY-------------- 156 (223)
T ss_dssp TTTCHHHHHHHHHH----HHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 01122333333333 33333331011 1111100 11222233455677888888876420
Q ss_pred CCCCCccceeccCCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCC
Q 013095 258 NTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSS 337 (449)
Q Consensus 258 ~~~c~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~ 337 (449)
++ +++...+|..|+||+++|||||||||++|.
T Consensus 157 --------------~~----------------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~ 188 (223)
T 1orq_C 157 --------------PD----------------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPA 188 (223)
T ss_dssp --------------SS----------------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred --------------CC----------------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCC
Confidence 00 111234799999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095 338 NAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (449)
Q Consensus 338 ~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 369 (449)
|..|++++++.|++|.+++|+.+|.+++.+++
T Consensus 189 t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 189 TPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.78 E-value=2.9e-19 Score=187.17 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=118.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhh-hc-cccccccccchhhhhhhccCCchhh
Q 013095 104 AVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGS-LF-VDLPAVFPLPQLVILSIIPRMSGLK 181 (449)
Q Consensus 104 ~~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~-~F-~Dlis~lP~~~i~~~~~~~~~~~~~ 181 (449)
...+.++|.++.++|.+|++++|.++- . .++|+|+ |. +|+++++|+......... ...+..
T Consensus 238 ~~~l~~ie~i~~~iFtiE~ilR~~~~~------~----------k~~Y~ks~wniiDli~iip~~i~l~~~~~-~~~~~~ 300 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLVRFFACP------S----------KAGFFTNIMNIIDIVAIIPYYVTIFLTES-NKSVLQ 300 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSS------C----------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT-SCSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCC------c----------HHHHHhchhHHHHHHHHHHHHHHHHhhhc-cccchh
Confidence 346788999999999999999998653 1 1489998 67 999999998653322110 001110
Q ss_pred HHhHhhHHHHHHHHHHHHHhhhhhhc---ccc--chhhhh---HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHh
Q 013095 182 ILSGMMLLKYSVLIQFVLRMIRIYPW---TLG--KLGEAT---WAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKA 253 (449)
Q Consensus 182 ~l~~~~llrl~rl~r~l~Rl~r~~~l---~~~--~~~~~~---~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~a 253 (449)
.....+.+|++|++ |++|++|+ ..+ .+..+. .......++++++..+++||+.|... .
T Consensus 301 ~~~~~~~lrvlRll----RvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e--~-------- 366 (514)
T 2r9r_B 301 FQNVRRVVQIFRIM----RILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--A-------- 366 (514)
T ss_dssp HHTTHHHHHHHHHH----GGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH--T--------
T ss_pred hhhHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee--c--------
Confidence 01112334444433 44444443 111 111110 01111112233445667777665431 0
Q ss_pred hhcCCCCCCccceeccCCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCC
Q 013095 254 CLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNL 333 (449)
Q Consensus 254 c~~~~~~c~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGD 333 (449)
|. ..+.+..|..|+||+++|||||||||
T Consensus 367 -----------------------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGD 394 (514)
T 2r9r_B 367 -----------------------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGD 394 (514)
T ss_dssp -----------------------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSS
T ss_pred -----------------------cC-----------------------------CCccccchhhhhheeeeEEEecccCC
Confidence 00 12234468899999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 013095 334 QTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPD 413 (449)
Q Consensus 334 i~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~ 413 (449)
+.|.+..++++++++|++|.+++++.+|.+.+.++....+++ .++..+.-++++.-...|.....+ + .+.+
T Consensus 395 i~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~-~~~~~~l~~h~iicg~~~~~~~l~--~------~~~~ 465 (514)
T 2r9r_B 395 MVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET-EGEEQAQYLQVTSSPKIPSSPDLK--K------SRSA 465 (514)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred CCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCEEEeCCCccchhHH--h------cccC
Confidence 999999999999999999999999999998887766543221 122222233444444444333221 1 1122
Q ss_pred CCCHHHHHhhCcHHHHHHHHHHHHH
Q 013095 414 TIDVESSLSILPKELRRNIKRELCL 438 (449)
Q Consensus 414 ~~~e~~il~~Lp~~Lr~eI~~~~~~ 438 (449)
...++.-..+|.+.++.++..+...
T Consensus 466 ~~~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 466 STISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp -------------------------
T ss_pred CCccccccccccccccccccccccc
Confidence 2344556678888888877665543
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.72 E-value=5.1e-18 Score=170.07 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcC
Q 013095 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQ 391 (449)
Q Consensus 312 ~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~ 391 (449)
+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++|+.+|.+++.+.+..+ ++++.++.+.+++.--.+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~lf~ 237 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR-RGDFVRNWQLVAAVPLFQ 237 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC---------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccchhhhcccccc
Confidence 4468999999999999999999999999999999999999999999999999988765322 222333322333333334
Q ss_pred CCCHHHHHHHHHHHH
Q 013095 392 KLSRSVQQQLKIYQR 406 (449)
Q Consensus 392 ~lp~~L~~rV~~y~~ 406 (449)
++|++..+++.+..+
T Consensus 238 ~ls~~~l~~l~~~~~ 252 (355)
T 3beh_A 238 KLGPAVLVEIVRALR 252 (355)
T ss_dssp ---------------
T ss_pred cCCHHHHHHHHHhce
Confidence 566666555555543
No 4
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.68 E-value=3.6e-17 Score=141.48 Aligned_cols=93 Identities=6% Similarity=0.154 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCC
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKL 393 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~l 393 (449)
.|..|+||+++|||||||||++|.|..|++++++.|++|++++|+++|.+++.+.+....+.+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 48899999999999999999999999999999999999999999999999998877655554444333334444555677
Q ss_pred CHHHHHHHHHHHH
Q 013095 394 SRSVQQQLKIYQR 406 (449)
Q Consensus 394 p~~L~~rV~~y~~ 406 (449)
+++.++++++|.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 7777777777765
No 5
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.66 E-value=8.6e-16 Score=134.69 Aligned_cols=87 Identities=14% Similarity=0.270 Sum_probs=71.5
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----cccChHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQI------YLQT----KATRPKEMTLRMQE 383 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~l~~ 383 (449)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++ +... .++.+.+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999886 3322 34455667788999
Q ss_pred HHhhhhcCCCCHHHHHH
Q 013095 384 MNEHMPIQKLSRSVQQQ 400 (449)
Q Consensus 384 i~~ym~~~~lp~~L~~r 400 (449)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 6
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.61 E-value=3.4e-15 Score=131.52 Aligned_cols=67 Identities=7% Similarity=0.264 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHH
Q 013095 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMT 378 (449)
Q Consensus 312 ~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~ 378 (449)
...|..|+||+++|||||||||++|.|..+++++++.+++|++++|+.+|.+++.+.+...++++..
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~ 148 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHF 148 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999987766544433
No 7
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.57 E-value=1.1e-14 Score=123.23 Aligned_cols=59 Identities=7% Similarity=0.289 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013095 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 371 (449)
..|..|+||++.|+|||||||++|.|..+++++++.+++|+.++|+.+|.+++.+.+..
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999987653
No 8
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.51 E-value=2e-15 Score=139.63 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=71.5
Q ss_pred HHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHHhHccc
Q 013095 364 QIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKN 443 (449)
Q Consensus 364 ~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~~~l~~ 443 (449)
|+|++++++++++|+++++.+++||+.+++|++||.||++||+|.|..+++.+++++++.||++||.||..++++.++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467899999999999999999999999999999999999999999998888999999999999999999999999888 8
Q ss_pred cCCCCC
Q 013095 444 VSPLSF 449 (449)
Q Consensus 444 vplF~n 449 (449)
+|+|++
T Consensus 80 ~~~f~~ 85 (212)
T 3ukn_A 80 LPLFES 85 (212)
T ss_dssp SGGGTT
T ss_pred cHHhhc
Confidence 999975
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.50 E-value=5.5e-14 Score=121.81 Aligned_cols=58 Identities=9% Similarity=0.347 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+.
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999998877543
No 10
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.48 E-value=4.2e-14 Score=129.23 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=74.9
Q ss_pred hcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHHhHccccCCCC
Q 013095 369 TKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLS 448 (449)
Q Consensus 369 ~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~~~l~~vplF~ 448 (449)
++++++.+|+++++.+++||+.+++|++||.||++||+|.|+ +++.+|+++++.||++||.||..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578889999999999999999999999999999999999997 4778999999999999999999999999999999997
Q ss_pred C
Q 013095 449 F 449 (449)
Q Consensus 449 n 449 (449)
+
T Consensus 81 ~ 81 (198)
T 2ptm_A 81 G 81 (198)
T ss_dssp T
T ss_pred c
Confidence 5
No 11
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.46 E-value=5.1e-14 Score=129.18 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=74.8
Q ss_pred HhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHHHHHHHHHHHhHccccCCC
Q 013095 368 QTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPL 447 (449)
Q Consensus 368 ~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~~~l~~vplF 447 (449)
+++++++.+|+++++.+++||+.+++|++||.||++||+|.|+ +++.+|+++++.||++||.+|..++++++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999997 477899999999999999999999999999999998
Q ss_pred CC
Q 013095 448 SF 449 (449)
Q Consensus 448 ~n 449 (449)
++
T Consensus 81 ~~ 82 (202)
T 3bpz_A 81 AN 82 (202)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 12
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.43 E-value=1.3e-12 Score=109.17 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 372 (449)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.+++.++....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999988855443
No 13
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.34 E-value=5.5e-13 Score=109.39 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
.|..|+||++.|+|||||||++|.+..+++++++.+++|+.++++++|.+++.+.+.
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999999999999999999999999998877654
No 14
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.26 E-value=1.7e-11 Score=99.28 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 369 (449)
.|..|+||+++|+|||||||++|.+..+++++++.+++|..++++++|.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 48889999999999999999999999999999999999999999999999887653
No 15
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.24 E-value=1.4e-11 Score=96.64 Aligned_cols=54 Identities=9% Similarity=0.263 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYL 367 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il 367 (449)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999998865
No 16
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.23 E-value=5.2e-13 Score=119.19 Aligned_cols=61 Identities=8% Similarity=0.332 Sum_probs=55.4
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013095 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATR 373 (449)
Q Consensus 313 ~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~ 373 (449)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++|+++|.+++.+.+...+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999998887654433
No 17
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.06 E-value=1.7e-10 Score=111.71 Aligned_cols=59 Identities=7% Similarity=-0.032 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhhhcccccCC-Ccc-CCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 312 PQKFLHCFRWGLRNLSCFGQN-LQT-SSNAWE----NFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 312 ~~~Yl~SlYwa~~TmttvGyG-Di~-p~~~~E----~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
+..+..|+||+++|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+++.
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999 986 766544 78889999999999999999887766543
No 18
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.05 E-value=5.7e-10 Score=108.54 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
.|..|+|||+.|||||||||++|.+..+++++++.+++|++++|+++|.+.+.++..
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 588999999999999999999999999999999999999999999999988877543
No 19
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.02 E-value=4.8e-10 Score=110.30 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 371 (449)
.|..|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999988876554
No 20
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.00 E-value=7.6e-10 Score=107.45 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCC
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKL 393 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~l 393 (449)
.|..|+||+++|||||||||++|.|...++++++.+++|+.+++++++.+++.+.+. ++..+..+++.+.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~------~~~~i~~le~~~~~~~~ 188 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS------LRHGIGHIEAIFLKWHV 188 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTHHHHHHHTTTC-
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHhcccc
Confidence 699999999999999999999999999999999999999999999999999988653 23333444445555555
Q ss_pred CH
Q 013095 394 SR 395 (449)
Q Consensus 394 p~ 395 (449)
++
T Consensus 189 ~~ 190 (309)
T 3um7_A 189 PP 190 (309)
T ss_dssp -C
T ss_pred ch
Confidence 44
No 21
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.87 E-value=2.5e-09 Score=104.77 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 371 (449)
.|..|+|||++|||||||||+.|.+...++++++.+++|++++|+++|.+.+.++...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999988876643
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.77 E-value=3.6e-09 Score=102.72 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWEN------FFVILVTISGLVLMLFLIGNIQIYLQTKATRPK 375 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~------i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~ 375 (449)
.|+.|+||++.|+|||||||++|.+..++ +++++.+++|+.+++++++.+++.+....+++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~~ 291 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC-
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998886 599999999999999999999999887765443
No 23
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.71 E-value=1.9e-08 Score=96.23 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 369 (449)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999876544
No 24
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.66 E-value=9.2e-08 Score=101.26 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGN-IQIYL 367 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~-i~~il 367 (449)
.|..|+||+++|||||||||++|.|..+++++++.+++|++++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999998 44443
No 25
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.65 E-value=1e-07 Score=93.57 Aligned_cols=57 Identities=11% Similarity=0.324 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhhcccccCCCccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSS--NAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~--~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
.+..++|||+.|+|||||||+.|. +...++++++.+++|.++.|+.+|.+.+-++.-
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466799999999999999999997 688999999999999999999999887666544
No 26
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.57 E-value=2.4e-08 Score=95.51 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAW-------ENFFVILVTISGLVLMLFLIGNIQIYLQ 368 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~-------E~i~~i~~mi~G~~~fa~iig~i~~il~ 368 (449)
.|+.|+||++.|+|||||||++|.+.. -++++++.+++|+.+++++++.+++++.
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999885 4999999999999999999999987654
No 27
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.52 E-value=4.5e-07 Score=89.16 Aligned_cols=58 Identities=19% Similarity=0.408 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcccccCCCccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTS--SNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p--~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 371 (449)
.+..++||++.|+|||||||+.| .+...++++.+.+++|.++.|..+|-+.+-++...
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 57889999999999999999986 48999999999999999999999998876665543
No 28
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.49 E-value=7.1e-09 Score=102.58 Aligned_cols=57 Identities=11% Similarity=0.296 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 370 (449)
.|..|+||++.|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999999999999999999999999999999999999998876553
No 29
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.74 E-value=0.00018 Score=66.76 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=28.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhhc--ccccccccc
Q 013095 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF--VDLPAVFPL 165 (449)
Q Consensus 105 ~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F--~Dlis~lP~ 165 (449)
..+..+|.++-++|.+|+++++.. + | -.++|+|+.+ +|++..+|.
T Consensus 42 ~~l~~~e~~~~~iF~~E~~lri~~-~-------~--------~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 42 ETIHLLDYGITIFFVIEILIRFIG-E-------K--------QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-c-------C--------chhHHhcCCcHHHHHHHHHHH
Confidence 456788999999999999999753 2 1 1358998754 998776653
No 30
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=96.34 E-value=0.0039 Score=53.74 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=38.2
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhhccccccccccch
Q 013095 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQ 167 (449)
Q Consensus 105 ~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F~Dlis~lP~~~ 167 (449)
..+..+|.++-++|.+|.++++..+- | .++|+|+..+|++|++|+..
T Consensus 52 ~~~~~id~~~~~iF~~Ey~lRl~~a~------------~----k~~f~~~~iiDllailP~~~ 98 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAYRAYKSG------------D----PAGYVKKTLYEIPALVPAGL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C----HHHHHHHSTTTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC------------c----HHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998653 1 35799884499999999864
No 31
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=95.88 E-value=0.0076 Score=50.85 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=37.4
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhhc-cccccccccch
Q 013095 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQ 167 (449)
Q Consensus 105 ~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~ 167 (449)
..+..+|.++-++|.+|.++++..+- + .++|++ |= +|+++++|+..
T Consensus 37 ~~l~~~d~~~~~iFt~E~~lRl~~~~------~----------~~~y~~-~niiDllailp~~~ 83 (132)
T 1ors_C 37 VRLYLVDLILVIILWADYAYRAYKSG------D----------PAGYVK-KTLYEIPALVPAGL 83 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT------S----------TTTTTT-TCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC------C----------HHHHHH-HHHHHHHHHHHHHH
Confidence 45778999999999999999997642 1 247899 76 99999999763
No 32
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=65.25 E-value=8.1 Score=41.67 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (449)
Q Consensus 314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 369 (449)
....++++++.+++..| ++..|.+...+++.+++++++.++.+.--+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999988 58899999999999999999999999999999998864
No 33
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=27.50 E-value=34 Score=27.50 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=24.5
Q ss_pred HHHHHHhhhhcCCCC-----HHHHHHHHHHHHHH
Q 013095 380 RMQEMNEHMPIQKLS-----RSVQQQLKIYQRYI 408 (449)
Q Consensus 380 ~l~~i~~ym~~~~lp-----~~L~~rV~~y~~y~ 408 (449)
+..+++++++.+++| .+|..||..|++..
T Consensus 41 tVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~ 74 (114)
T 2rnn_A 41 KVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNA 74 (114)
T ss_dssp CHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhc
Confidence 346789999999999 59999999999863
No 34
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=27.25 E-value=14 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHHHhhCcHHHHHHHHHH
Q 013095 417 VESSLSILPKELRRNIKRE 435 (449)
Q Consensus 417 e~~il~~Lp~~Lr~eI~~~ 435 (449)
..++++.||.++|+|++..
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 4578999999999998753
No 35
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=25.03 E-value=7.5 Score=32.21 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcC-----CC---------CCHHHHHhhCcHHHHHHHH
Q 013095 390 IQKLSRSVQQQLKIYQRYIWRKP-----DT---------IDVESSLSILPKELRRNIK 433 (449)
Q Consensus 390 ~~~lp~~L~~rV~~y~~y~~~~~-----~~---------~~e~~il~~Lp~~Lr~eI~ 433 (449)
.+-.+..||+.|++||+.-|.-+ +- ..++++..+||+.|.-|=.
T Consensus 4 NRvFsQRLRqSi~~Yfd~pW~Lt~A~aeRL~DlRDEel~Lr~eEvtGelP~elEyee~ 61 (152)
T 3euj_B 4 NRVFGQRLRQSIQNYFSSPWLLYTAKAEALLDLRDDEAMLNEMEAVGELPMALEYESL 61 (152)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhccCchhhhhcchHHHhhhhHHHHhhhhhhhhcCCchhhhHHHH
Confidence 44567789999999999998522 11 1256788899988765543
No 36
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.44 E-value=46 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHhhhhcCCCC-----HHHHHHHHHHHHH
Q 013095 380 RMQEMNEHMPIQKLS-----RSVQQQLKIYQRY 407 (449)
Q Consensus 380 ~l~~i~~ym~~~~lp-----~~L~~rV~~y~~y 407 (449)
++.+++++++.+++| .+|..|+..|+.-
T Consensus 14 kV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 14 KLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 456788899999888 6899999999874
No 37
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=22.65 E-value=64 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.515 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhcCCCC-----HHHHHHHHHHHHH
Q 013095 379 LRMQEMNEHMPIQKLS-----RSVQQQLKIYQRY 407 (449)
Q Consensus 379 ~~l~~i~~ym~~~~lp-----~~L~~rV~~y~~y 407 (449)
-++.++++.++.++|| .+|.+|++.|.+-
T Consensus 29 lkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 29 MKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp SCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3457888999999998 5999999998763
No 38
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.81 E-value=38 Score=24.65 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.9
Q ss_pred HHhhCcHHHHHHHHH
Q 013095 420 SLSILPKELRRNIKR 434 (449)
Q Consensus 420 il~~Lp~~Lr~eI~~ 434 (449)
.|+.||++||.+|..
T Consensus 8 wL~~LP~~Lq~kV~a 22 (70)
T 2lh0_A 8 FLDELPESLSRKIGT 22 (70)
T ss_dssp GGGGSCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 689999999999863
Done!