BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013096
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
           Pyridine- Containing Inhibitor
 pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
           Pyridine- Containing Inhibitor
          Length = 426

 Score = 32.0 bits (71), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 338 FVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPN 381
           F+F +   DY +I ++V   C+ H+CV  I  S+  +  MY P+
Sbjct: 259 FLFDV---DYNDIEVIVHKECIIHSCVEFIDKSV--ISQMYYPD 297


>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
 pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
 pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
           Isomerase
 pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
           Isomerase
 pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
           Isomerase
 pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
           Isomerase
          Length = 488

 Score = 31.6 bits (70), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 338 FVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPN 381
           F+F +   DY +I ++V   C+ H+CV  I  S+  +  MY P+
Sbjct: 321 FLFDV---DYNDIEVIVHKECIIHSCVEFIDKSV--ISQMYYPD 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.143    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,456,059
Number of Sequences: 62578
Number of extensions: 423798
Number of successful extensions: 838
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 8
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)