Query 013096
Match_columns 449
No_of_seqs 331 out of 2463
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 6.7E-31 2.3E-35 264.9 38.6 356 54-422 24-420 (451)
2 3o7q_A L-fucose-proton symport 100.0 8.8E-29 3E-33 248.6 38.0 338 68-420 40-417 (438)
3 2gfp_A EMRD, multidrug resista 100.0 2.7E-28 9.1E-33 240.4 20.4 346 64-424 10-365 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 3.8E-25 1.3E-29 225.8 34.5 321 84-414 49-450 (491)
5 4gc0_A D-xylose-proton symport 99.9 5.1E-25 1.8E-29 224.7 33.6 365 74-447 32-475 (491)
6 2cfq_A Lactose permease; trans 99.9 5E-24 1.7E-28 213.4 21.4 336 69-420 22-384 (417)
7 2xut_A Proton/peptide symporte 99.9 7.5E-22 2.6E-26 203.1 26.3 154 73-231 31-194 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.2E-10 4.1E-15 116.5 21.6 152 73-232 271-430 (451)
9 3o7q_A L-fucose-proton symport 99.2 5.5E-09 1.9E-13 103.9 24.6 144 74-228 278-425 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.0 2.6E-08 8.9E-13 100.8 21.3 137 291-431 52-192 (491)
11 2cfq_A Lactose permease; trans 99.0 1.7E-08 5.9E-13 100.3 18.4 145 88-240 258-404 (417)
12 2xut_A Proton/peptide symporte 98.8 1.1E-07 3.7E-12 97.1 19.1 129 291-422 52-185 (524)
13 2gfp_A EMRD, multidrug resista 98.7 1.2E-07 4.1E-12 92.3 12.4 133 283-419 23-158 (375)
14 4gc0_A D-xylose-proton symport 98.7 1.5E-06 5E-11 87.7 20.7 164 75-243 298-470 (491)
15 2g9p_A Antimicrobial peptide l 46.8 9.4 0.00032 20.0 1.4 14 108-121 2-15 (26)
16 2l2t_A Receptor tyrosine-prote 26.8 82 0.0028 19.7 3.6 11 435-445 33-43 (44)
17 1cmk_I CAMP-dependent protein 21.3 15 0.00051 20.0 -0.5 10 113-122 9-18 (26)
18 2jwa_A Receptor tyrosine-prote 21.1 1.6E+02 0.0055 18.4 4.6 7 433-439 33-39 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.7e-31 Score=264.90 Aligned_cols=356 Identities=9% Similarity=-0.014 Sum_probs=249.8
Q ss_pred hhhHHHHHHHHHHHHHhh----hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHH
Q 013096 54 PFQRNFLLLFSLASVMEG----LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILH 129 (449)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~----~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~ 129 (449)
+.+++.+....+..+.++ ...++.+.+.+++ .|+.+++++.++..++..+++++.|+++||+|||++++++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 333444444444444333 3467777777789 99999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHH----hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013096 130 LFVGV-WKS----ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANW 204 (449)
Q Consensus 130 ~~~~l-~~~----~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~ 204 (449)
+++++ +++ ++|++.+++.|+++|++.+...++..+ ++.| -.++++.++.++.......++.+++|.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~----~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVH----WWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHT----TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHH----HCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 778 899999999999999999988777655 3333 2455667788888877888888899999988
Q ss_pred HhcccccCC-cchhHHHHHHHHHHHHHHHHhccccCCCCC------c-chh-----------h---hh-hhHhhhcChhH
Q 013096 205 LVGIDVKKG-VVPSSTASVFLSILGIICVSRGWTENPKMA------F-DDY-----------R---TS-FFTYIFGDKRI 261 (449)
Q Consensus 205 l~~~~~~~g-~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~------~-~~~-----------~---~~-~~~~l~~~~~~ 261 (449)
+.+.. + ||++|++.+++.++..++..+..||+++++ + ++. + ++ ..++++++|++
T Consensus 178 l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 178 GMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 77654 7 999999877665554444444456654321 0 000 0 01 14677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC--CchhHHHHHHHHH
Q 013096 262 WLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF--RTEDCLLYAFVVL 336 (449)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~--~~~~~l~~~~~~~ 336 (449)
+...+...+.....+. ...|.|.+.++. ++...+.+.....++.++|..+.+++.| |+ ++++.+..+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCchhHHHHHHHH
Confidence 8776655555444333 345788887652 3445677888888889999999999999 66 6676665544333
Q ss_pred H-HHHHHHhcccc-hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH-HHHHHHHH-hHHhhhc
Q 013096 337 G-FVFSIIAYDYQ-EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA-AILLFLLL-RGFYRNI 412 (449)
Q Consensus 337 ~-~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~-~~~~~~~~-g~~~~~~ 412 (449)
. +++.......+ +.+......++.+++.+...+...++.+|.+|++.||+++|+.+...++ +...++.. |.+.+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 331 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 44443333322 3333444555667777777788888999999999999999999888887 75555544 4555666
Q ss_pred chhHHHHHHH
Q 013096 413 ENAAMVAFAA 422 (449)
Q Consensus 413 ~~~~~~~~~~ 422 (449)
+....+.+..
T Consensus 411 g~~~~~~~~~ 420 (451)
T 1pw4_A 411 GWDGGFMVMI 420 (451)
T ss_dssp CSHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6554444433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=8.8e-29 Score=248.59 Aligned_cols=338 Identities=12% Similarity=0.019 Sum_probs=237.2
Q ss_pred HHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H---HHhcchhH
Q 013096 68 VMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W---KSITAHPS 143 (449)
Q Consensus 68 ~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~---~~~~s~~~ 143 (449)
.......|+.|.+.+++|.|+.|++++.+...++..+++++.|+++||+|||++++.+.++++++++ + ..++|++.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T 3o7q_A 40 VANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3345667888888889999999999999999999999999999999999999999999999988775 6 67899999
Q ss_pred HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHh-cccccCC---------
Q 013096 144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLV-GIDVKKG--------- 213 (449)
Q Consensus 144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~-~~~~~~g--------- 213 (449)
+++.|+++|++.+...+...+ ++.|. .++++.++.++.......++.+++|.+++++. +.. ..
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~ 192 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANP-FVTVL----GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKM 192 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHS----SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHS
T ss_pred HHHHHHHHHhhHHHhhhhHHH-HHHHH----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccC
Confidence 999999999999988877654 44443 34555667777777778888889999999887 432 22
Q ss_pred ---------------cchhHHHHHHHHHHHHH-HHHhccccCCCCC-c---chhhhhhhHhhhcChhHHHHHHHHHHHHH
Q 013096 214 ---------------VVPSSTASVFLSILGII-CVSRGWTENPKMA-F---DDYRTSFFTYIFGDKRIWLLVLAQACLQF 273 (449)
Q Consensus 214 ---------------~~~~f~~~~~~~~~~~~-~i~~~~~e~~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (449)
||++|.+......+..+ ...+..||+++++ + ++..++.+++++++|+++...+...+...
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG 272 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHH
Confidence 89999765444333322 2333445554331 1 12223567889999998877665554443
Q ss_pred HHHHHHHHhhhhh-ccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccch
Q 013096 274 SIALFWILWAPTL-VAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQE 349 (449)
Q Consensus 274 ~~~~~~~~~~p~~-~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 349 (449)
..+ ....|.|.+ .++ + +....+.......++.++|..+.+++.| |+++++.+..+..+.++.+....+.++.
T Consensus 273 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 273 AQT-ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS---RFAPHKVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp HHH-HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 333 334577877 654 2 3455777777888888999999999999 7888887776665555554444443322
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHH-HHhHHhhhcc-hhHHHHH
Q 013096 350 IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL-LLRGFYRNIE-NAAMVAF 420 (449)
Q Consensus 350 ~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~ 420 (449)
. .+..+++.+++.+...|...++..|..|++ |+++.++.. ...++...++ +.|.+.+..+ ....+.+
T Consensus 349 -~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 349 -V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp -H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2 233445667778888899999988999966 777777655 2334333333 3355555555 4444433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=2.7e-28 Score=240.43 Aligned_cols=346 Identities=13% Similarity=0.091 Sum_probs=237.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchh
Q 013096 64 SLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHP 142 (449)
Q Consensus 64 ~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~ 142 (449)
++.........|..+.+.+++|.|+++++++.+...++..+++++.|+++||+||||+++.+..+..++++ +..++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence 34445555677888887789999999999999999999999999999999999999999999999888776 77889999
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096 143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV 222 (449)
Q Consensus 143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~ 222 (449)
.+++.|+++|++.+...+...+ ++.|..+++.+ ++.++.......++.+++|.+++++.+.. +||+.|.+..
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~ 161 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMART-LPRDLYERTQL----RHANSLLNMGILVSPLLAPLIGGLLDTMW---NWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSC----CSHHHHHHHHHHHHHHHHHHHHHHSSCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHCCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhc---cHHHHHHHHH
Confidence 9999999999999988877665 44555433322 33455555666677788999999888755 8999998776
Q ss_pred HHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHH
Q 013096 223 FLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLI 298 (449)
Q Consensus 223 ~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i 298 (449)
...++..+...+..||++++++ ++..+++++++++||+++...+...+.....+.+ ..+.|.+.++ + ++...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF-EACSGVLMGAVLGLSSMTVSIL 240 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHH
Confidence 6655554434445677655422 2233345778888888887666555544443333 4567877654 2 34456778
Q ss_pred HHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHH-H--HHHHHHHhc-ccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 013096 299 FPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV-L--GFVFSIIAY-DYQEIGILVALFCLFHACVGLILPSLARL 374 (449)
Q Consensus 299 ~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~-~--~~~l~~~~~-~~~~~~~~~~~~~l~~~~~g~~~p~~~~~ 374 (449)
.....++.+++..+.+++.| |.++ + +..+... . ++.+..... ..++.+......++.+++.+...|...++
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~---r~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 315 (375)
T 2gfp_A 241 FILPIPAAFFGAWFAGRPNK---RFST-L-MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSG 315 (375)
T ss_dssp HHTHHHHHHHHHHHHHTTTT---HHHH-H-HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH-H-HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888899999999888 4443 2 2222211 1 111111111 11133334445566678888888999999
Q ss_pred HhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHH
Q 013096 375 RTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALG 424 (449)
Q Consensus 375 ~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 424 (449)
.+|..| |+||++.|+.+...+++...++.. |.+.+..+....+.+.++.
T Consensus 316 ~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 316 AMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999998 889999999888777665434333 3333444444444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=3.8e-25 Score=225.75 Aligned_cols=321 Identities=12% Similarity=0.101 Sum_probs=202.4
Q ss_pred hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh-hCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhh
Q 013096 84 YGVAKEQMMLLLCAGFSAALFVGSFLGMISDL-IGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFN 161 (449)
Q Consensus 84 ~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr-~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~ 161 (449)
+|.|+.+.+++.+...++..+++++.|+++|| +|||++++.+.+++.++++ +.+++|++.+++.|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 8999999999999988876 788899999999999999999988877
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHh---cc-c
Q 013096 162 FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSR---GW-T 237 (449)
Q Consensus 162 ~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~---~~-~ 237 (449)
..+ ++.|..+++. +..+..++.......++.+++|.+++++.+.. |||++|++.....+++.+.... .. +
T Consensus 129 ~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 129 VST-LVGTLYDEHD--RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHH-HHHHHSSSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHcCccc--ccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 655 4555432221 12455666666667778888999999988755 8999999865554444333221 11 1
Q ss_pred cCCCC-Cc---chhhhhhhHh--------------------------------------------hhc-------Ch---
Q 013096 238 ENPKM-AF---DDYRTSFFTY--------------------------------------------IFG-------DK--- 259 (449)
Q Consensus 238 e~~~~-~~---~~~~~~~~~~--------------------------------------------l~~-------~~--- 259 (449)
+...+ ++ ++..++..+. ..+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 11111 10 1110110000 000 11
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHH-----H
Q 013096 260 -RIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCL-----L 330 (449)
Q Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l-----~ 330 (449)
+.+...+...+ ....+.....+.|.+..+ + +..+.+.......++.+++..+.+++.| |+++|+.. .
T Consensus 283 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 283 VSYIPLFIAAVL-FWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT---AWKKNQPSSPTKFA 358 (491)
T ss_dssp TTHHHHHHHHHH-HHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH---HTTTC---CHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH---HHhccCCCchHHHH
Confidence 11222211111 111121112234444432 2 2245666666677777888888899888 55544322 2
Q ss_pred HHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096 331 YAFVVLGFVFSIIAYD--------YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF 402 (449)
Q Consensus 331 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~ 402 (449)
.+..+.++++...... ..+.+.....+++.+++.+...|...++.+|..|++.||++.|+.+...+++...+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433444333322221 11333445556667788888889999999999999999999999888877776555
Q ss_pred HHHhHHhhhcch
Q 013096 403 LLLRGFYRNIEN 414 (449)
Q Consensus 403 ~~~g~~~~~~~~ 414 (449)
+...++..+.+.
T Consensus 439 ~~~~~~~~~~~~ 450 (491)
T 4aps_A 439 AQLVTLYNAKSE 450 (491)
T ss_dssp HHHGGGGGGSST
T ss_pred HHHHHHHhcccH
Confidence 555555444443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=5.1e-25 Score=224.66 Aligned_cols=365 Identities=12% Similarity=0.068 Sum_probs=210.1
Q ss_pred hHHHHHHHHHhCC--------ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--------
Q 013096 74 SVFGEYELVYYGV--------AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK-------- 136 (449)
Q Consensus 74 ~~~~~~l~~~~g~--------s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~-------- 136 (449)
++.++.+.++++. ++.+.+++.+..+++.+++++++|+++||+|||++++++.+++.++++ ++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445555555432 234567888888999999999999999999999999999999998876 66
Q ss_pred ----------HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 013096 137 ----------SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLV 206 (449)
Q Consensus 137 ----------~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~ 206 (449)
+++|+++++++|+++|+|.|...+.... ++.|.. |.++.++..+........+.+.++.++....
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~----p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELA----PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTS----CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhC----CHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 4789999999999999999988877643 566653 3444455555555454555555555555443
Q ss_pred ccc-----ccCCcchhHHHHHHHHHHHHHHHHhccccCCCC-----Ccch---------------h----h--------h
Q 013096 207 GID-----VKKGVVPSSTASVFLSILGIICVSRGWTENPKM-----AFDD---------------Y----R--------T 249 (449)
Q Consensus 207 ~~~-----~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~-----~~~~---------------~----~--------~ 249 (449)
... ..++||.++.......++..+ ..+..||+++. +.++ . . +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (491)
T 4gc0_A 187 RSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK 265 (491)
T ss_dssp TTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh
Confidence 321 023566666666555554433 34467887531 0000 0 0 0
Q ss_pred h-hhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch
Q 013096 250 S-FFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE 326 (449)
Q Consensus 250 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~ 326 (449)
. .....++.++.........+.+...+..+..+.|.+.++ + .............+...++..+..++.| |+++|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d---r~Grr 342 (491)
T 4gc0_A 266 TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD---KFGRK 342 (491)
T ss_dssp HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSH
T ss_pred hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH---hhcCc
Confidence 0 011122223333322222222222233344556666543 2 2222233333445667788889999999 78888
Q ss_pred hHHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHhhh-hhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096 327 DCLLYAFVVLGFVFSIIA---YDYQEIGILVALFCLFHACVGL-ILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF 402 (449)
Q Consensus 327 ~~l~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~~~g~-~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~ 402 (449)
+.+..+....++++.... .........+...+++..+.+. ..|....+.+|.+|++.|++++|+......++....
T Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 343 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 877665555444443322 1111212222222222222222 346677888999999999999998776655543222
Q ss_pred HHHhH-------Hhhhcch-hHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013096 403 LLLRG-------FYRNIEN-AAMVAFAALGLFIAAGCMHVLKRWGKQPYQNWH 447 (449)
Q Consensus 403 ~~~g~-------~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (449)
..... .....+. ....++++++++.+...+.+++|+|.++.+|.+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 21111 1111222 223345556666565566777887776655544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=5e-24 Score=213.44 Aligned_cols=336 Identities=13% Similarity=0.057 Sum_probs=194.2
Q ss_pred HhhhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH---H-HHHhcch-h
Q 013096 69 MEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG---V-WKSITAH-P 142 (449)
Q Consensus 69 ~~~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~---l-~~~~~s~-~ 142 (449)
......|+.+...+ ++|.|+.|+|.+.+...++..++++++|+++||+||||+++.+..++++.. . +...+.. .
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445577665444 589999999999999999999999999999999999999998887765421 1 1222211 1
Q ss_pred HHHHHHHHHHhHHHHhh----hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhH
Q 013096 143 SVWVANICLSLASSIFS----FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSS 218 (449)
Q Consensus 143 ~l~~~R~l~Glg~~~~~----~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f 218 (449)
.++..|++.|++.+... +..+++ .+|.. |. .+..++.......++..++|.+++++.+ . +|+.+|
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~-~~-----~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~---~~~~~f 170 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAF-IEKVS-RR-----SNFEFGRARMFGCVGWALGASIVGIMFT-I---NNQFVF 170 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHH-HHHHH-HH-----HTCCHHHHSSSTTTHHHHHHHHHHHHHH-H---CSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHhh-hh-----cccchHHHHHHHHHHHHHHHHHHHHHHH-h---chhHHH
Confidence 23344555554443322 233332 22221 11 1112233333345566678888888765 2 788899
Q ss_pred HHHHHHHHHHHHHHHhccccCCCC---Cc----c--hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096 219 TASVFLSILGIICVSRGWTENPKM---AF----D--DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD 289 (449)
Q Consensus 219 ~~~~~~~~~~~~~i~~~~~e~~~~---~~----~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 289 (449)
++.+...++..+......||++++ ++ + +...+.++++++||+++...+........ +.....|.|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFANFFTS 249 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 876554433333232233343211 00 0 01113456788999887655443332222 22223456766543
Q ss_pred C------CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 013096 290 G------REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHAC 363 (449)
Q Consensus 290 ~------~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 363 (449)
. +....|.......++.+++..+.+++.| |+++++.+..+..+.++.+......+ +.+..+...++.+++
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN---RIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFE 325 (417)
T ss_dssp TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHH
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 1 1223456666666677888999999999 78888877666555555444443333 222233333344455
Q ss_pred hhhhhhHHHHHHhccCCCcchhHHHHhh-HHHHHHHHHHHHHH-hHHhhhcchhHHHHH
Q 013096 364 VGLILPSLARLRTMYVPNELRGGMISLS-LAPANAAILLFLLL-RGFYRNIENAAMVAF 420 (449)
Q Consensus 364 ~g~~~p~~~~~~~~~~p~~~rg~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 420 (449)
.+...+....+..|..|++.||++.+.. +...+++...++.. |.+.++.+....+.+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 5555666678889999999999998884 65555654444443 444555555444433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=7.5e-22 Score=203.06 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=116.8
Q ss_pred hhHHHHH-HHHHhC------CChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhc-chh
Q 013096 73 WSVFGEY-ELVYYG------VAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSIT-AHP 142 (449)
Q Consensus 73 ~~~~~~~-l~~~~g------~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~-s~~ 142 (449)
..++.+. +.+++| .|+.+.+++.+...++..+++++.|+++||+ |||++++.+.+++.++.+ +.+++ |++
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3444444 345788 9999999999999999999999999999999 999999999999888776 77788 999
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096 143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV 222 (449)
Q Consensus 143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~ 222 (449)
.+++.|+++|++.+...+...+ ++.|..+++.+ ......++.......++.+++|.+++++.+.. +|+++|.+..
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r-~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~ 185 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNK-SLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPG 185 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTT-THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHH-HHHHHcCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHH
Confidence 9999999999999988777655 44544322211 12234444455666677788899888887654 8999998876
Q ss_pred HHHHHHHHH
Q 013096 223 FLSILGIIC 231 (449)
Q Consensus 223 ~~~~~~~~~ 231 (449)
+..++..+.
T Consensus 186 ~~~~~~~~~ 194 (524)
T 2xut_A 186 VLMFVATVF 194 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=1.2e-10 Score=116.47 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=110.8
Q ss_pred hhHHHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh--CchHHHHHHHHHHH-HHHH-HHHh--cchhHHH
Q 013096 73 WSVFGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI--GQKKVCLIFFILHL-FVGV-WKSI--TAHPSVW 145 (449)
Q Consensus 73 ~~~~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~--GRr~~ll~~~~~~~-~~~l-~~~~--~s~~~l~ 145 (449)
...+.+...++ +|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+.. ++.+ .... ++.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 34455555555 899999999999988889999999999999999 99999888777665 4433 2333 3677788
Q ss_pred HHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH-HHHHHHHHHHHHhcccccCCcchhHHHHHHH
Q 013096 146 VANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA-ALIGGQVLANWLVGIDVKKGVVPSSTASVFL 224 (449)
Q Consensus 146 ~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~-~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~ 224 (449)
+.-++.|++.+...+...+ ++.| ..+++..++.++.......+ +..++|.+.+++.+.. ||+..|.+..++
T Consensus 351 ~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~ 422 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGL-HALE----LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGG 422 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHH-HHHH----TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHH-HHHH----HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHH
Confidence 8888888887765554322 2222 34566678888887777777 8888999999888765 788888876665
Q ss_pred HHHHHHHH
Q 013096 225 SILGIICV 232 (449)
Q Consensus 225 ~~~~~~~i 232 (449)
.+++.+..
T Consensus 423 ~~~~~~~~ 430 (451)
T 1pw4_A 423 SILAVILL 430 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.17 E-value=5.5e-09 Score=103.94 Aligned_cols=144 Identities=8% Similarity=-0.088 Sum_probs=99.9
Q ss_pred hHHHHHH-HHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096 74 SVFGEYE-LVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC 150 (449)
Q Consensus 74 ~~~~~~l-~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l 150 (449)
..+.+.. .++ +|.++.+.+...+...++..++.++.|+++||+|||+++..+.++..+..+ ....++.+.++.. ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 3445555 444 599999999998888889999999999999999999999988887777665 5566666555444 78
Q ss_pred HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC-cchhHHHHHHHHHHH
Q 013096 151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSILG 228 (449)
Q Consensus 151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g-~~~~f~~~~~~~~~~ 228 (449)
.|++.+...+...++. . +..+++ .+...+... .+.++..++|.+.+++.+.. | ++..|.+.....++.
T Consensus 357 ~g~~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLG-I----KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---GNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHTTHHHHHHHHH-H----SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---TSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-H----hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence 8888877666543321 1 223332 333333333 34466778888888888765 5 778888765554444
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.00 E-value=2.6e-08 Score=100.80 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=97.7
Q ss_pred CccchHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096 291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP 369 (449)
Q Consensus 291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p 369 (449)
+..+.|++.+.+.++..+++++.+++.| | +++|+.+..+..+.+++.......+ +.+..+...++.+++.|...|
T Consensus 52 s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 52 TRATAASIMAIYASMVYLSGTIGGFVAD---RIIGARPAVFWGGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccc
Confidence 4456788888889999999999999999 8 8999888877766666555554543 344455556677888888999
Q ss_pred HHHHHHhccCCCcc--hhHHHHhhHHHHHHHHHHHHHHh-HHhhhcchhHHHHHHHHHHHHHHHH
Q 013096 370 SLARLRTMYVPNEL--RGGMISLSLAPANAAILLFLLLR-GFYRNIENAAMVAFAALGLFIAAGC 431 (449)
Q Consensus 370 ~~~~~~~~~~p~~~--rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~ 431 (449)
...++..|.+|+++ |+++++..+...+++...++..+ .+.+..+....+...++..+++...
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 67778877777777765555544 4445566655555444444433333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.98 E-value=1.7e-08 Score=100.27 Aligned_cols=145 Identities=12% Similarity=-0.004 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHH
Q 013096 88 KEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWV 166 (449)
Q Consensus 88 ~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~ 166 (449)
..+.+...+...+...++.++.|+++||+|||+++..+.++.++..+ ..+.++.+.+++..++.+++.+...+...+ +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34556666666677778888999999999999999888777766544 445677888888888888876554443322 3
Q ss_pred HHHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCC
Q 013096 167 AIEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240 (449)
Q Consensus 167 v~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~ 240 (449)
++|. +|.+..+..++.. +..+.++.+++|.+++++.+.. |+...|.+.++..+++.+......||++
T Consensus 337 ~~~~----~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQ----FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHH----SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHH----CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4443 4555566666653 4455677778899899887654 6677787766665555544444455543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.85 E-value=1.1e-07 Score=97.12 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=90.9
Q ss_pred CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096 291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF-RTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP 369 (449)
Q Consensus 291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p 369 (449)
++.+.|++.+.+.++..++.++.+++.| |+ ++|+.+..+..+.+++.........+.+..+...++.+++.|...|
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIAD---RFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHT---TSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 4456788888889999999999999999 78 8888877766655555544444331334445556677888888999
Q ss_pred HHHHHHhccCCCcchhHHHHh---hHHHHHHHHHHHHHHh-HHhhhcchhHHHHHHH
Q 013096 370 SLARLRTMYVPNELRGGMISL---SLAPANAAILLFLLLR-GFYRNIENAAMVAFAA 422 (449)
Q Consensus 370 ~~~~~~~~~~p~~~rg~~~~~---~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 422 (449)
...++..|.+|+++|++..+. .+...+++...++..+ .+.+..+....+.+.+
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 185 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPG 185 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999876555 6666777655555544 3444455555444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.67 E-value=1.2e-07 Score=92.34 Aligned_cols=133 Identities=12% Similarity=0.019 Sum_probs=94.5
Q ss_pred hhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096 283 APTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF 360 (449)
Q Consensus 283 ~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 360 (449)
.|.+.++ + ++.+.|++.+...++..++++..+++.| |+++|+.+..+..+.++........+ +.+..+...++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~ 98 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD---RVGRRPVILVGMSIFMLATLVAVTTS-SLTVLIAASAMQ 98 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT---TSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 4555443 2 4566888888889999999999999999 78888877766555555444333332 334445555667
Q ss_pred HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHHH
Q 013096 361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMVA 419 (449)
Q Consensus 361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 419 (449)
+++.+...|...++..|..|+|+|+++++..+...+++...++..+++. +..+....+.
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 8888888999999999999999999999999888887765565554443 4344444333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.67 E-value=1.5e-06 Score=87.74 Aligned_cols=164 Identities=9% Similarity=-0.141 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--H-hc-chhHHHHHHH
Q 013096 75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--S-IT-AHPSVWVANI 149 (449)
Q Consensus 75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--~-~~-s~~~l~~~R~ 149 (449)
.+.+.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++.+ .. . .+ +-+..++.-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 344566677788777666555555567778888999999999999999888776665443 21 1 11 1112222222
Q ss_pred HHHhHHHHhh-hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc---ccCCcchhHHHHHHHH
Q 013096 150 CLSLASSIFS-FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID---VKKGVVPSSTASVFLS 225 (449)
Q Consensus 150 l~Glg~~~~~-~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~---~~~g~~~~f~~~~~~~ 225 (449)
+...+.+... +.. ..+.+|. +|.+..+...+.....+.++..+++.+...+.+.. ...++...|++.+.+.
T Consensus 378 ~~~~~~~~~~~~~~-~~~~~E~----fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 378 FYVAAFAMSWGPVC-WVLLSEI----FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHTTTTHHH-HHHHHHS----SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH-HHHHHHh----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2222221111 221 1234443 45555555666555444444444443333222110 0124445777666666
Q ss_pred HHHHHHHHhccccCCCCC
Q 013096 226 ILGIICVSRGWTENPKMA 243 (449)
Q Consensus 226 ~~~~~~i~~~~~e~~~~~ 243 (449)
+++.+++++..|||++++
T Consensus 453 ~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHheecCCCCCC
Confidence 666666667789998863
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=46.81 E-value=9.4 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=11.6
Q ss_pred HHHhhhhhhCchHH
Q 013096 108 FLGMISDLIGQKKV 121 (449)
Q Consensus 108 ~~G~laDr~GRr~~ 121 (449)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999875
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.84 E-value=82 Score=19.67 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=4.4
Q ss_pred HHHhhcCCCcc
Q 013096 435 LKRWGKQPYQN 445 (449)
Q Consensus 435 ~~~~~~~~~~~ 445 (449)
+.|+|++.+++
T Consensus 33 ~~RRRr~~~kr 43 (44)
T 2l2t_A 33 YVRRKSIKKKR 43 (44)
T ss_dssp HHHTTCSSCCC
T ss_pred Hhhhhhhhhcc
Confidence 33434443343
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=21.33 E-value=15 Score=20.04 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=7.9
Q ss_pred hhhhCchHHH
Q 013096 113 SDLIGQKKVC 122 (449)
Q Consensus 113 aDr~GRr~~l 122 (449)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 6899998764
No 18
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.14 E-value=1.6e+02 Score=18.35 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 013096 433 HVLKRWG 439 (449)
Q Consensus 433 ~~~~~~~ 439 (449)
.++||++
T Consensus 33 ~~~RRR~ 39 (44)
T 2jwa_A 33 ILIKRRQ 39 (44)
T ss_dssp HHHHHHC
T ss_pred hheehhh
Confidence 3444443
Done!