BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013100
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGDKGL 47
+ VTGH LGG+ A LF + L + PL +T G P++G+ G
Sbjct: 156 IAVTGHSLGGAAALLFGINL-----KVNGHDPLVVTLGQPIVGNAGF 197
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCI-TFGAPLIGDKGLQQAISQNLMWNS 59
++ GH LGG+VA+L L R G PL I T+G+P +G+ L +S
Sbjct: 138 VVSVGHSLGGAVATLAGANL-----RIG-GTPLDIYTYGSPRVGNTQLAAFVSNQAGGE- 190
Query: 60 DFLHVAASQDLVPRL 74
V ++D VPRL
Sbjct: 191 --FRVTNAKDPVPRL 203
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGDKGLQQAISQNLMWNSD 60
++ TGH LGG++A++ L R ++GAP +G++ + ++ +
Sbjct: 140 VVFTGHALGGALATVAGADL-----RGNGYDIDVFSYGAPRVGNRAFAEFLT--VQTGGT 192
Query: 61 FLHVAASQDLVPRL 74
+ + D+VPRL
Sbjct: 193 LYRITHTNDIVPRL 206
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGDKGLQQAISQNLMWNSD 60
+IVTGH LGG+ A L + L + R K T G P +G+ + +
Sbjct: 139 VIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRVGNPTFAYYVESTGI---P 195
Query: 61 FLHVAASQDLVPRL 74
F +D+VP +
Sbjct: 196 FQRTVHKRDIVPHV 209
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 3 VTGHCLGGSVASLFTLWL--LESINRPGTKRPLCITFGAPLIGDKGLQQAISQNLMWNSD 60
VTGH GG+++S LWL ++ + I F P G+ L
Sbjct: 170 VTGHSKGGALSSTLALWLKDIQGVKLSQNIDISTIPFAGPTAGNADFADYFDDCL--GDQ 227
Query: 61 FLHVAASQDLVP 72
+A S D+VP
Sbjct: 228 CTRIANSLDIVP 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,765,669
Number of Sequences: 62578
Number of extensions: 569301
Number of successful extensions: 1518
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 15
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)