BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013100
         (449 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6JJF0|GLPK_OLICO Glycerol kinase OS=Oligotropha carboxidovorans (strain ATCC 49405 /
           DSM 1227 / OM5) GN=glpK PE=3 SV=1
          Length = 498

 Score = 38.1 bits (87), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 339 GKPLSSQVITRKQNVSASLTEDSCFWAHVEEAL--IQC-ELLRNGQEEESTRKKLIEFEE 395
           G P++ + I   Q   A+    +CF   + ++     C  LL  G    +++ KL+    
Sbjct: 231 GGPIAVRGIAGDQQ--AATVGQACFAPGMMKSTYGTGCFALLNTGATAVASKNKLLTTIA 288

Query: 396 YVMEQIKEYAVSPEIFLGGSSFMQWWKDYEQIVGTSYKS 434
           Y +  ++ YA+   IF+ GS+ +QW +D   ++ T++ S
Sbjct: 289 YQLNGVRTYALEGSIFVAGSA-VQWLRDGLHLIKTAHDS 326


>sp|Q6LPE2|KCY_PHOPR Cytidylate kinase OS=Photobacterium profundum GN=cmk PE=3 SV=2
          Length = 228

 Score = 36.6 bits (83), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 137 WHMIDYGAVVKRLMSTVRFKGISQLSEMIECPLQAGIVLQLQA--------------IGL 182
           WH++D GA+ + L       G+   SE +  PL A + +Q +A               G 
Sbjct: 31  WHLLDSGAIYRVLALAAIHHGVDLESEDVLVPLAAHLDVQFKAEGDLVKVILEGEDVSGE 90

Query: 183 NRRQQSGDSNPLIAKLEKCEEAFVSKRKMGFDPSKKLNKRKEDMAKLEWYKKVSK 237
            R++++G +   +A L +  EA + +R+  F  +  L     DM  + +   + K
Sbjct: 91  LRKEETGMTASKVAALPRVREALL-RRQRAFSNAPGLVADGRDMGTVVFPNAIVK 144


>sp|Q3EBR6|PLA16_ARATH Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana
           GN=At2g30550 PE=1 SV=2
          Length = 529

 Score = 35.4 bits (80), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 1   MIVTGHCLGGSVASLFTLWLLE-SINRP--GTKRPLCI-TFGAPLIGDKGLQQAISQNLM 56
           + VTGH LGG++A L    + E  +NR   G   P+ + T+G P +G+   ++ + +   
Sbjct: 312 ITVTGHSLGGALAILSAYDIAEMRLNRSKKGKVIPVTVLTYGGPRVGNVRFRERMEE--- 368

Query: 57  WNSDFLHVAASQDLVPR---LFISPYNPNAM 84
                + V    D+VP+   LF++   P+A+
Sbjct: 369 LGVKVMRVVNVHDVVPKSPGLFLNESRPHAL 399


>sp|Q9XTR8|LIP1_CAEEL Lipase ZK262.3 OS=Caenorhabditis elegans GN=ZK262.3 PE=1 SV=1
          Length = 353

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 3   VTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGDKGLQQAISQNLMWNSDFL 62
           VTGH LGG++A L    ++    R   K  + +TFG P +G+    +A  Q + ++   +
Sbjct: 159 VTGHSLGGALAGLCAPRIVHDGLRQSQKIKV-VTFGEPRVGNIEFSRAYDQLVPYSFRVV 217

Query: 63  HVAASQDLVPRL 74
           H   S D+VP L
Sbjct: 218 H---SGDVVPHL 226


>sp|B1MXB4|MUTS2_LEUCK MutS2 protein OS=Leuconostoc citreum (strain KM20) GN=mutS2 PE=3
           SV=1
          Length = 801

 Score = 34.3 bits (77), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1   MIVTGHCLGGSVASLFTLWLLESINRPG----TKRPLCITFGAPLIGDKGLQQAISQNLM 56
           +I+TG   GG   ++ TL +L+ + + G    TKRP  +     +  D G +Q+I Q+L 
Sbjct: 332 IIITGPNTGGKTITIKTLGILQLMAQSGLFITTKRPSTVGVFHEIFADIGDEQSIEQSLS 391

Query: 57  WNSDFLHVAASQDLVPRL 74
             S   H+A    ++ R+
Sbjct: 392 TFSS--HMANIVSMIDRI 407


>sp|Q1IMB2|GLPK_KORVE Glycerol kinase OS=Koribacter versatilis (strain Ellin345) GN=glpK
           PE=3 SV=1
          Length = 498

 Score = 33.1 bits (74), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 374 CELLRN-GQEEESTRKKLIEFEEYVMEQIKEYAVSPEIFLGGSSFMQWWKDYEQIVGTSY 432
           C +L+N G+    T  +L+    + +  + EYA+   +F+GG + +QW +D  ++V +S 
Sbjct: 268 CFMLQNTGERAVPTSNRLVTTVAWKIGDVVEYALEGSVFIGG-AVVQWLRDGLRLVRSSG 326

Query: 433 KSQ 435
           + Q
Sbjct: 327 EFQ 329


>sp|P02708|ACHA_HUMAN Acetylcholine receptor subunit alpha OS=Homo sapiens GN=CHRNA1 PE=1
           SV=2
          Length = 482

 Score = 32.3 bits (72), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 31  RPLCITFGAPLIGDKGLQQAISQNLMWNSD 60
           RP C+T G PL      +Q +  NL WN D
Sbjct: 86  RPSCVTLGVPLFSHLQNEQWVDYNLKWNPD 115


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,793,339
Number of Sequences: 539616
Number of extensions: 7184302
Number of successful extensions: 19110
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 19102
Number of HSP's gapped (non-prelim): 35
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)