Query 013102
Match_columns 449
No_of_seqs 152 out of 585
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 00:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2864 Nuclear division RFT1 100.0 1.7E-61 3.7E-66 462.2 46.8 435 5-444 3-453 (530)
2 PF04506 Rft-1: Rft protein; 100.0 1.6E-59 3.4E-64 481.7 42.1 430 12-445 3-475 (549)
3 PRK10459 colanic acid exporter 100.0 8.2E-38 1.8E-42 324.5 44.6 403 7-440 2-406 (492)
4 COG2244 RfbX Membrane protein 100.0 5.8E-31 1.2E-35 272.4 38.6 412 7-443 3-417 (480)
5 TIGR02900 spore_V_B stage V sp 100.0 1.7E-29 3.7E-34 261.8 43.1 418 13-442 2-436 (488)
6 PRK15099 O-antigen translocase 100.0 4.5E-29 9.8E-34 253.6 44.3 410 12-443 3-415 (416)
7 TIGR01695 mviN integral membra 100.0 3.9E-27 8.6E-32 245.0 44.5 413 11-443 1-431 (502)
8 PF01943 Polysacc_synt: Polysa 99.9 2.6E-21 5.7E-26 184.3 29.7 271 12-301 1-273 (273)
9 PF03023 MVIN: MviN-like prote 99.8 4.6E-16 1E-20 159.3 44.4 303 127-442 99-405 (451)
10 PF13440 Polysacc_synt_3: Poly 99.8 4.5E-17 9.8E-22 153.4 27.6 247 28-299 2-250 (251)
11 PRK09575 vmrA multidrug efflux 99.7 7.2E-13 1.6E-17 136.2 44.7 418 6-442 8-438 (453)
12 TIGR00797 matE putative efflux 99.7 5.8E-14 1.3E-18 138.7 33.1 313 20-346 3-325 (342)
13 PRK01766 multidrug efflux prot 99.7 5.9E-13 1.3E-17 137.0 41.0 417 9-440 11-442 (456)
14 COG0728 MviN Uncharacterized m 99.7 6.9E-12 1.5E-16 127.7 46.9 414 9-441 6-438 (518)
15 PRK00187 multidrug efflux prot 99.7 1.6E-12 3.5E-17 134.0 43.0 407 7-434 7-438 (464)
16 COG0534 NorM Na+-driven multid 99.5 4.5E-10 9.7E-15 115.3 42.9 415 8-441 15-444 (455)
17 PRK10367 DNA-damage-inducible 99.5 9.1E-10 2E-14 112.7 43.5 414 9-443 8-434 (441)
18 PRK10189 MATE family multidrug 99.4 1.1E-08 2.3E-13 105.9 44.1 411 9-438 28-460 (478)
19 PRK01766 multidrug efflux prot 99.3 3.2E-10 7E-15 116.8 20.9 201 231-439 11-217 (456)
20 PRK09575 vmrA multidrug efflux 99.3 5.1E-10 1.1E-14 115.2 21.9 201 231-438 11-213 (453)
21 COG0534 NorM Na+-driven multid 99.2 8.8E-10 1.9E-14 113.1 21.5 202 231-440 16-221 (455)
22 PRK10367 DNA-damage-inducible 99.2 1.6E-09 3.5E-14 111.0 22.8 202 231-439 8-211 (441)
23 TIGR00797 matE putative efflux 99.2 1.9E-09 4.1E-14 106.5 20.3 192 240-439 1-196 (342)
24 PRK10189 MATE family multidrug 99.1 3.9E-09 8.5E-14 109.2 20.7 199 230-437 27-234 (478)
25 PRK00187 multidrug efflux prot 99.1 1.8E-08 3.8E-13 104.1 20.8 197 231-437 9-212 (464)
26 TIGR02900 spore_V_B stage V sp 98.8 1.1E-06 2.4E-11 91.1 22.5 193 236-438 3-202 (488)
27 TIGR01695 mviN integral membra 98.7 5.4E-06 1.2E-10 86.3 23.6 197 235-440 3-207 (502)
28 PF01554 MatE: MatE; InterPro 98.3 7.5E-07 1.6E-11 77.9 5.4 160 240-407 1-161 (162)
29 PRK15099 O-antigen translocase 98.3 0.00011 2.4E-09 74.8 20.8 190 236-438 5-195 (416)
30 PF03023 MVIN: MviN-like prote 98.0 0.00082 1.8E-08 69.2 20.4 174 264-445 7-187 (451)
31 PF14667 Polysacc_synt_C: Poly 98.0 8.2E-05 1.8E-09 63.8 11.1 83 359-444 2-84 (146)
32 PF01943 Polysacc_synt: Polysa 97.8 0.008 1.7E-07 56.6 22.6 188 237-442 4-193 (273)
33 COG0728 MviN Uncharacterized m 97.6 0.019 4.1E-07 59.4 22.7 203 232-441 7-217 (518)
34 PF13440 Polysacc_synt_3: Poly 97.5 0.018 3.8E-07 53.7 19.2 164 255-438 7-171 (251)
35 PRK10459 colanic acid exporter 97.3 0.019 4.1E-07 59.7 19.6 181 233-433 6-187 (492)
36 COG2244 RfbX Membrane protein 96.3 0.53 1.1E-05 48.7 20.1 166 9-176 212-381 (480)
37 KOG1347 Uncharacterized membra 96.2 0.14 3E-06 52.9 15.1 199 231-437 27-227 (473)
38 PF01554 MatE: MatE; InterPro 94.5 0.091 2E-06 45.4 6.0 140 20-162 3-148 (162)
39 COG4267 Predicted membrane pro 69.7 1.3E+02 0.0027 30.2 33.6 64 13-79 21-91 (467)
40 PF14667 Polysacc_synt_C: Poly 42.8 1.9E+02 0.0041 23.8 15.3 68 129-200 2-69 (146)
41 PF07260 ANKH: Progressive ank 38.2 4E+02 0.0086 26.1 28.4 142 127-280 130-288 (345)
No 1
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-61 Score=462.16 Aligned_cols=435 Identities=41% Similarity=0.653 Sum_probs=388.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccc
Q 013102 5 PVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASR 84 (449)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~ 84 (449)
++++..+..+|+..++.+|+..|+++|+.|.++.|.++||.+|++++.+++++.+++|++||.+|.|.+|.++..+|
T Consensus 3 s~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d--- 79 (530)
T KOG2864|consen 3 SDSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD--- 79 (530)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc---
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999877644
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 013102 85 EENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGL---S-YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (449)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~ 160 (449)
+..+..|..|++.+++..+++..+-++..+... . ..+++...+.+.++++++|.+.||.+...|-.++++.++.
T Consensus 80 --~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 80 --TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred --cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 566788999999999888887766544444321 1 3455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-------ccccCcccccccCC--cccc
Q 013102 161 VETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGY-WGYFLLFG-------AFKTSDLFPFRLGN--MMSY 230 (449)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~p~~~~~--~~~~ 230 (449)
.|..+.++++++..+..+..++.+++.+++.+|+.+++..+++| |.|+..++ ..+..+..|+..++ ...+
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 99999999999988888888888899999999999999877644 43333332 12234566665554 4557
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc--cCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchh
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWL--DTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 308 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~--~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~ 308 (449)
++|..+..+.++.|++.|+++|++||+|+... ++-+|||.|++++|+|++++|.+++||||.++-+|++..+++++|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 89999999999999999999999999999954 5667999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHH
Q 013102 309 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 388 (449)
Q Consensus 309 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~ 388 (449)
.+++.+.+.+.+|++..+|+.++.||+++++.++.+..|+||.+.+.+..+|+||.|+|++++||++|+|..|.++.+++
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 88888999999999999999999999999999999999999999887889999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013102 389 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQVW 444 (449)
Q Consensus 389 ~~~~~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 444 (449)
.++|+.|++.++++++++++++.++|..|.+.||++||.+|+.|++++|++|+++.
T Consensus 398 ~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=100.00 E-value=1.6e-59 Score=481.67 Aligned_cols=430 Identities=40% Similarity=0.662 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHH
Q 013102 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL 91 (449)
Q Consensus 12 ~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~ 91 (449)
-.+|+.++++.|+++|+++|+.|.++.|.++||.+|+.+++++++..+++|++|||+|+|++|.++++.|++ +.++.
T Consensus 3 s~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~---~~~~~ 79 (549)
T PF04506_consen 3 SAKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKS---NWAQS 79 (549)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcc---cHHHh
Confidence 467889999999999999999999999999999999999999999999999999999999999987762222 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHhhccc-----CCchh-hHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013102 92 LKVAWLTLPLGIFITIGACFF------------VLWWQGLS-----YSNPY-AQAIFINGFACVLELLAEPLYILSQNLL 153 (449)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-----~~~~~-~~~l~~~~~~~~i~~l~~p~~~~~q~~~ 153 (449)
.|..|.+.+++.++.+....+ ...+.... ...|+ ...+.++++++++|.+.||.|...|.++
T Consensus 80 ~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l 159 (549)
T PF04506_consen 80 INLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQML 159 (549)
T ss_pred hhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 555554444333322211100 01111111 12344 4688899999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHhhc--cC-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Q 013102 154 LLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLF 220 (449)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (449)
+++.|++.|..+.++|++++++.++.. .+ ..++.+++.+|+.+++..+..|.... .++.++.++..
T Consensus 160 ~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~-~~~~~~~s~~l 238 (549)
T PF04506_consen 160 FFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMY-FFPFKSFSDLL 238 (549)
T ss_pred hhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhc-cCcccchhhcc
Confidence 999999999999999999997765432 11 13468899999999887665554321 11211122333
Q ss_pred ccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHH
Q 013102 221 PFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 295 (449)
Q Consensus 221 p~~~~---~~~~~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~--~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p 295 (449)
|+... ...+++++.++..+.++.|++.|+++||+||+++.. +.+.+|+|+|++++|+|++++|++++||||+.+.
T Consensus 239 p~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~ 318 (549)
T PF04506_consen 239 PKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRL 318 (549)
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHH
Confidence 43322 245578999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhcCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHH
Q 013102 296 TFARSASGQYPQ------KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVL 369 (449)
Q Consensus 296 ~fs~~~~~~~~~------~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~ 369 (449)
.|++..++++++ +.++..+.+...+|++..+|+.++.+||++++.++.+++|++|.+...+.++++||+|+|++
T Consensus 319 ~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~l 398 (549)
T PF04506_consen 319 YFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFL 398 (549)
T ss_pred HHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHH
Confidence 999998654332 23556678999999999999999999999999999999999999887789999999999999
Q ss_pred hhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013102 370 AMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ-SAGSVGLILANSLNMILRIIYSAIFIKHYFQVWR 445 (449)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~li~-~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++||++|+|++++++++++.+++++|.+.+++++..++++++ .+|..|.++||++||.+|+.||++||+||+++..
T Consensus 399 a~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~~~ 475 (549)
T PF04506_consen 399 AINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFRNSG 475 (549)
T ss_pred HHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999 4999999999999999999999999999999753
No 3
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=8.2e-38 Score=324.52 Aligned_cols=403 Identities=16% Similarity=0.143 Sum_probs=308.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchh
Q 013102 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (449)
Q Consensus 7 ~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~ 86 (449)
+..++..||+.|+.++++.+++++|+++++++|+|+|||||+++++.++... ...+.|.|++++++|+++++++
T Consensus 2 ~~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~-~~~~~~~Gl~~aii~~~~~~~~----- 75 (492)
T PRK10459 2 SLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGF-ADTLSDMGIGASIIQRQDISHL----- 75 (492)
T ss_pred ChHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHH-HHHHHHcCHHHHHHhcccCCHH-----
Confidence 4677889999999999999999999999999999999999999998766554 4568899999999986432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh-hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHH
Q 013102 87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (449)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~ 165 (449)
+.+ +..|.++..|++++++..+..+.... .+++|. ...+.+.++...+..+.+.....+||+++++..+..+...
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~ 151 (492)
T PRK10459 76 QLS---TLYWLNVGLGIVVFVLVFLLSPLIAD-FYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISA 151 (492)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 222 34555555666555554444333322 244554 4567777777788888887788899999999999988888
Q ss_pred HHHHHHHHHhHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 013102 166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 245 (449)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~ 245 (449)
.+...+..+.++.. + ++.|+++.++++.+.+..+.++... +++ ..|+.. .+....|+.++++.|.+.++
T Consensus 152 ~i~~~~~~i~~~~~--~-~g~~~l~~~~~~~~~~~~l~~~~~~--~~~-----~~~~~~-~~~~~~k~ll~~~~~~~~~~ 220 (492)
T PRK10459 152 VVAGFTFAVVSAFF--W-PGALAAILGYLVNSSVRTLLFGYFG--RKI-----YRPALH-FSLASVKPNLSFGAWQTAER 220 (492)
T ss_pred HHHHHHHHHHHHHH--C-CcHHHHHHHHHHHHHHHHHHHHHHh--ccc-----CCccce-ecHHHHHHHHhhhHHHHHHH
Confidence 88777666554433 2 4577888888877765443332211 111 112111 11223589999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 013102 246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (449)
Q Consensus 246 i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~ 325 (449)
+..+++++.|++++|++.|++++|+|+.|+++.+++...+..++.++.+|.+++.++ | .++.++.+++..+....
T Consensus 221 ~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~--~---~~~~~~~~~~~~~~~~~ 295 (492)
T PRK10459 221 IINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQD--D---TEKLRVGFLKLLSVLGI 295 (492)
T ss_pred HHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC--C---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877777899999999998632 2 24566778889999999
Q ss_pred HHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHH
Q 013102 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 405 (449)
Q Consensus 326 i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l 405 (449)
+++|+..+....+|+++.+++||+|.++. +++++++++..+..++++......+.++++...+.+ .+..+++++.
T Consensus 296 ~~~p~~~~l~~~a~~ii~ll~g~~~~~a~--~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~---~~~~~~~i~~ 370 (492)
T PRK10459 296 INFPLLLGLMVVSNNFVPLVFGEKWNSAI--PILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWN---VFKTFLFIPA 370 (492)
T ss_pred HHHHHHHHHHHHhHHHHHHhcChhHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHH---HHHHHHHHHH
Confidence 99999999999999999999999999974 789999988888888888888888888887655443 3445566666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 013102 406 NVILIQSAGSVGLILANSLNMILRIIYSAIFI-KHY 440 (449)
Q Consensus 406 ~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~-~~~ 440 (449)
.+.+++.+|..|+++|..++..+......++. +|.
T Consensus 371 ~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~~ 406 (492)
T PRK10459 371 IVIGGQLAGLIGVALGFLLVQIINTILSYFLMIKPV 406 (492)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999988888888877 434
No 4
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=100.00 E-value=5.8e-31 Score=272.40 Aligned_cols=412 Identities=17% Similarity=0.169 Sum_probs=287.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchh
Q 013102 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (449)
Q Consensus 7 ~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~ 86 (449)
+..++..|++.|...++..++++++++.++++|.+||||||++++..++.... ..+.+.|++.++.|+.+.+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~-~~i~~~G~~~ai~r~ia~~~~~~~~~ 81 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLF-SILADFGLPAAITREIAEYREKGEYL 81 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHH-HHHHHcCCcHHHHHHHHHhhcccHHH
Confidence 34678899999999999999999999999999999999999999987776554 45778999999999877665433221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHH
Q 013102 87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVAT 166 (449)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~ 166 (449)
+.... .....+......+.+.... ...... .++.....+...++...+..........+|++++++..+... ...
T Consensus 82 ~~~~~--~~~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (480)
T COG2244 82 LLILL--SVLLLLLLALILLLLLLLI-AYLLAP-IDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI-VSS 156 (480)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHH-HHHhcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH-HHH
Confidence 11111 0111111111111111111 111111 112334556666777777777777777889999999776652 222
Q ss_pred HHHHHHHHhHHhh-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 013102 167 FSRCFTMCILIVK-QYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 245 (449)
Q Consensus 167 ~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~ 245 (449)
.........+. .....+.|+.+.+.+.........++ .+++ +..+..+. . .+...|+.++++.|+..++
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~-~--~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 157 --IFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLG---KKKR--GLKRPILR-F--SLALLKELLRFGLPLLLSS 226 (480)
T ss_pred --HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---Hhhh--hccccccC-c--hhHHHHHHHHHhhHHHHHH
Confidence 11221111111 12224567777777766554433222 1111 00111111 0 1223589999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 013102 246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (449)
Q Consensus 246 i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~ 325 (449)
+.+.+.++.|++++|++.|++++|+|+.+.++.+.+ ..+..|++++.+|.+++..+++++ +++++.+++.++....
T Consensus 227 ~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~---~~~~~~~~~~~~~~~~ 302 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR---KALKKLLRQSLKLLLL 302 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888765 488889999999999999876543 4455678889999999
Q ss_pred HHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHH
Q 013102 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 405 (449)
Q Consensus 326 i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l 405 (449)
+++|...+....+|+++.+++||+|.++. ++++++++...+..+++......++.++++...+. ..+..+.++++
T Consensus 303 ~~~p~~~~l~~~~~~~i~~~fg~~~~~~~--~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~i~~~~l 377 (480)
T COG2244 303 ISIPALLGLLLLAPPIITLLFGEKYASAA--PILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI---SLISALLNLIL 377 (480)
T ss_pred HHHHHHHHHHHHHhhhheeecCCcccchh--HHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH---HHHHHHHHHHH
Confidence 99999999999999999999999999864 68999998888888888888888888888664433 35666899999
Q ss_pred HHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Q 013102 406 NVILIQSAGSVGLILAN--SLNMILRIIYSAIFIKHYFQV 443 (449)
Q Consensus 406 ~~~li~~~G~~G~~~a~--~i~~~~~~~~~~~~~~~~~~~ 443 (449)
++++++.+|..|++++. .+.......+......+..+.
T Consensus 378 ~~~li~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 417 (480)
T COG2244 378 NLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKF 417 (480)
T ss_pred HhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999888 334444444444444444333
No 5
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.7e-29 Score=261.80 Aligned_cols=418 Identities=16% Similarity=0.149 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHHH
Q 013102 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL 92 (449)
Q Consensus 13 ~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~~ 92 (449)
.|++.|.+++++.+++++++.+++++|.|||||||.+++..++.... ..+.+.|++.++.|...+..+++|+++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~ 80 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL 80 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence 47789999999999999999999999999999999999976654433 44667899999998744321111122333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh-hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 013102 93 -KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRC 170 (449)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~ 170 (449)
+..|.++..+++.+++..+..+.......+++. ...+.+++...++..+.......+|+++|++.....+....+.+.
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~ 160 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRI 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHH
Confidence 445566566665555544443332221223443 245666777777888888888889999999999998888888887
Q ss_pred HHHHhHHhh--ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHH
Q 013102 171 FTMCILIVK--QYEM-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247 (449)
Q Consensus 171 ~~~i~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~ 247 (449)
...+.++.. ..+. +++.+..++..+...+..+..+.+..++++.+.+..+....+.+.+..|++++++.|.+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~ 240 (488)
T TIGR02900 161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI 240 (488)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 665444322 1121 2233333333333333222211111111110111101000011122358999999999999999
Q ss_pred HHHHhhhhhhhhhhccCC---------ccchhH-HHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHH
Q 013102 248 KLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 317 (449)
Q Consensus 248 ~~~~~~~d~l~ig~~~~~---------~~~G~Y-~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~ 317 (449)
.++.++.|++++|+..++ ++.|.| +.+.++.+++. .+..++.++..|.+++..+++|+ ++.++.++
T Consensus 241 ~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~~~---~~~~~~~~ 316 (488)
T TIGR02900 241 GSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKKNY---SSIEKRIN 316 (488)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHH
Confidence 999999999999987643 345665 46777777664 77889999999999999876543 34556788
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHH
Q 013102 318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 397 (449)
Q Consensus 318 ~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i 397 (449)
+..+....++.|...+....+|+++.+++| |.++ .++++++++..++..++...+....+.++++...+.+ .+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~~--~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~ 389 (488)
T TIGR02900 317 QAIKISLLLGLITTVILLVIPDELGALFYG--RPDA--GNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNS---LI 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCch--HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH---HH
Confidence 899999999999888888999999999885 5554 3689999998888899888888888888886644333 45
Q ss_pred HHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013102 398 FSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 442 (449)
Q Consensus 398 ~~ii~i~l~~~li--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 442 (449)
..++++++++.++ +.+|..|+++|..++..+.......+.+|..+
T Consensus 390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~ 436 (488)
T TIGR02900 390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIR 436 (488)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5688888999888 89999999999999999999999888887664
No 6
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.5e-29 Score=253.61 Aligned_cols=410 Identities=11% Similarity=-0.010 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHH
Q 013102 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL 91 (449)
Q Consensus 12 ~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~ 91 (449)
+.|+..|+..+++++.+++++.+|+++|+|||||||.+++...+.... ..+.+.|+..+..|.-.+++++ +++.++.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~-~~~~~~G~~~a~~~~ia~~~~~--~~~~~~~ 79 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVL-GVLAGAGIFNGVTKYVAQYHDQ--PQQLRAV 79 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH-HHHHcCCccceeeeeHHhcCCC--HHHHHHH
Confidence 678999999999999999999999999999999999999866555443 3455788877775554332221 2233444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013102 92 LK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNP-YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR 169 (449)
Q Consensus 92 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~ 169 (449)
.+ ..++++..+++++++..+..........++| +...+.+.+.......+.......+++..|.+........+.+..
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 159 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIG 159 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3445555566655554443222221122333 344455555544444544545555666666666555555544444
Q ss_pred HHHHHhHHhhccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHH
Q 013102 170 CFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRK 248 (449)
Q Consensus 170 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~~ 248 (449)
.+.. ...+...|.+ +.++.+++|.+..+... ++.+ +++ + ......+.+.+.+..|++++++.|...+++..
T Consensus 160 i~l~-i~~~~~~Gv~Ga~iat~i~~~i~~~~~~--~~~~---~~~-~-~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~ 231 (416)
T PRK15099 160 VAAY-YLCYRLGGYEGALLGLALVPALVVLPAG--IMLI---RRG-T-IPLSYLKPSWDNGLAGQLGKFTLMALITSVTL 231 (416)
T ss_pred HHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHH--HHHH---Hcc-c-eehHhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3331 1112222323 34666666655433221 1111 111 0 00000011112233589999999999999999
Q ss_pred HHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013102 249 LLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGL 328 (449)
Q Consensus 249 ~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 328 (449)
.+.+..|+.++++..|.+++|.|+.|+|+.+.....+..|++++.+|..++.. |+| +.++..++..+....++.
T Consensus 232 ~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~---~~~---~~~~~~~~~~~~~~~~~~ 305 (416)
T PRK15099 232 PVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT---EKR---DITREIVKALKFVLPAVA 305 (416)
T ss_pred HHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887767889999999999999852 222 334456677777777777
Q ss_pred HHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHH
Q 013102 329 VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVI 408 (449)
Q Consensus 329 ~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~ 408 (449)
+........+|+++.+++||+|.++. +++++++....+...+........+.++. +..-.......+++++++++
T Consensus 306 ~~~~~~~l~a~~ii~l~~g~~~~~~~--~~~~~l~~~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~i~l~~~ 380 (416)
T PRK15099 306 AASFTVWLLRDFAIWLLFSNKFTAMR--DLFAWQLVGDVLKVGAYVFGYLVIAKASL---RFYILAEVSQFTLLTGFAHW 380 (416)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 77666667899999999999999963 68888876555544444332222222211 12222233344578888889
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013102 409 LIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQV 443 (449)
Q Consensus 409 li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 443 (449)
+++.+|..|+++|..++..+....+.....+++++
T Consensus 381 li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~~~ 415 (416)
T PRK15099 381 LIPLHGALGAAQAYMATYIVYFSLCCGVFLLYRRR 415 (416)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998777777654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.97 E-value=3.9e-27 Score=245.05 Aligned_cols=413 Identities=13% Similarity=0.073 Sum_probs=292.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhh-HHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHH
Q 013102 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADY-AIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAA 89 (449)
Q Consensus 11 ~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~f-Glva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~ 89 (449)
++.|+..+++++++.+++.+++-..+++|.+|||++ |.++++..+.......+.+.|+..+.++....++++++ +.+
T Consensus 1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~--~~~ 78 (502)
T TIGR01695 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEK--EAR 78 (502)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh--HHH
Confidence 367899999999999999999999999999999999 99998765543333334567888888875433222111 111
Q ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc---cCCchh----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 013102 90 -KLLK-VAWLTLPLGIFITIGACFFVLWWQGL---SYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (449)
Q Consensus 90 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~ 160 (449)
...+ ..+..+..+++.+++..+..+..... ..+++. ...+++++.+.++..+.......+|+++|++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 1222 23332222333333333332222221 123332 25678888888898888888889999999999888
Q ss_pred HHHHHHHHHHHHHHhHHhhccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHH
Q 013102 161 VETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC 238 (449)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~ 238 (449)
.+....+...+. +.+.. .+ ++.++.+ .+.++...+..+.++.+.. +++ .+..|+. +.+....|+.++++
T Consensus 159 ~~i~~~i~~i~~-~~~~~--~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~~~~~k~~l~~~ 229 (502)
T TIGR01695 159 SPILFNIGVILS-LLFFD--WN-YGQYSLALAIGVLIGGVAQLLIQLPFLR-KAG---FLLKPRF-NFRDPGLKRFLKLF 229 (502)
T ss_pred HHHHHHHHHHHH-HHHHH--cc-cchHHHHHHHHHHHHHHHHHHHHHHHHH-HCC---CcccCcC-CCCChhHHHHHHHH
Confidence 877665543332 22222 22 3344443 5555554444333322221 111 1112211 11222358999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHH
Q 013102 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 318 (449)
Q Consensus 239 ~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~ 318 (449)
.|...+++..++.++.|+.+ +...|++++|.|+.|+++.+++...+..+++++.+|.+++...++|+ ++.++.+++
T Consensus 230 ~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~---~~~~~~~~~ 305 (502)
T TIGR01695 230 LPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW---NELRDLLNQ 305 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHH
Confidence 99999999999999999987 88889999999999999998877667789999999999999876544 455568888
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHhcC------CcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhh
Q 013102 319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGK------KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 392 (449)
Q Consensus 319 ~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~------~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 392 (449)
.++....+++|...+....+|+++.+++|+ +|.++ .++++++++..++..++......+++.++++.....+
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 383 (502)
T TIGR01695 306 GIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMT--ATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINS 383 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHH
Confidence 999999999999999999999999999985 35554 3789999998888899888888888888876544333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013102 393 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQV 443 (449)
Q Consensus 393 ~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 443 (449)
.+..++++++++++++.+|..|+++|..++..+.......+.+|....
T Consensus 384 ---~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 431 (502)
T TIGR01695 384 ---VISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKG 431 (502)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 445578999999999999999999999999999988888888877543
No 8
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.90 E-value=2.6e-21 Score=184.26 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHH
Q 013102 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL 91 (449)
Q Consensus 12 ~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~ 91 (449)
+.|+..|...+++.+++++++++++++|.+||||||.++...++.... ..+.+.|++.++.|+..+++++++ ..+..
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~-~~~~~~G~~~~~~r~~~~~~~~~~--~~~~~ 77 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLL-SILADLGLSQAIVRFIAEYKDKKE--LRSAY 77 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhhHH--HHHHH
Confidence 368889999999999999999999999999999999999977665543 457789999999998766544211 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhHHHHHHHHHH-HHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013102 92 LKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-YAQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSR 169 (449)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~ 169 (449)
.........++.++.... ..... ...++ ......+..... ++...........|++++++.....+....+.+
T Consensus 78 ~~~~~~~~~~~~~i~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T PF01943_consen 78 FSSVLFLLLIFSLIFLLI----LLIAS-FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLS 152 (273)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111111111111 11111 12233 222222222222 344455555557788888887777776666666
Q ss_pred HHHHHhHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHH
Q 013102 170 CFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL 249 (449)
Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~~~ 249 (449)
.+..........+ .+....+..+..++..+..+.+.. ++.+ +.+...+....|+.+++++|++.+++...
T Consensus 153 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (273)
T PF01943_consen 153 LLLILLLLFLGSS---LWGFLLGLVISSLVSLIISLFYLR--RKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSW 222 (273)
T ss_pred HHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHH--HHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6554444333222 444444555544443222222111 1101 11111112235899999999999999999
Q ss_pred HHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHh
Q 013102 250 LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA 301 (449)
Q Consensus 250 ~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~ 301 (449)
+.++.|+++++++.|++++|+|+.|+++++.+. .+..++.++.+|.+++++
T Consensus 223 ~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 223 LYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998765 777888889999999863
No 9
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.83 E-value=4.6e-16 Score=159.32 Aligned_cols=303 Identities=17% Similarity=0.156 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhHHhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 013102 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWG 206 (449)
Q Consensus 127 ~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (449)
..++++....++.++.......+|-+.||..........++.-.+.. .+.....+.+.+++++.+..+.++...+....
T Consensus 99 ~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~-~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~ 177 (451)
T PF03023_consen 99 QLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSL-LLLSNSWGQENIYALAWGVLIGAIIQFLIQLP 177 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888988888876666555444332221 11112222122555555655555554332222
Q ss_pred HHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHH
Q 013102 207 YFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVF 286 (449)
Q Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~ 286 (449)
. .++. ..+..|.... +.+..|+.++...|....+...+++.-.|+.+-+. .++..+..++-|.++.+++...+.
T Consensus 178 ~-~~~~---~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~-l~~G~vs~l~YA~~l~~lp~~i~~ 251 (451)
T PF03023_consen 178 Y-LRRF---GFRFRPKFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASF-LGEGSVSALNYAQRLYQLPLGIFA 251 (451)
T ss_pred H-HHHC---CCcccccCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence 1 2111 1111222111 11124789999999999999999999999998887 568889999999999999998899
Q ss_pred hhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhc-CCcCCCc---hhHHHHHH
Q 013102 287 LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG-KKWSDGE---ASTALRYY 362 (449)
Q Consensus 287 ~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G-~~w~~a~---~~~il~i~ 362 (449)
.++..+.+|.+++..+++|. ++.++..++.++....+.+|+..+....+++++.++|+ .+..+.. ...+++++
T Consensus 252 ~~i~tv~~P~ls~~~~~~d~---~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y 328 (451)
T PF03023_consen 252 VSISTVVFPKLSRLAAEGDW---EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIY 328 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654 44556789999999999999999999999999999993 3443332 24699999
Q ss_pred HHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013102 363 CLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 442 (449)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 442 (449)
+..+|..+++......+++.++++...+ ...+..++|++++.++.+.+|..|.++|+.++..+.....+.+.+|..+
T Consensus 329 ~~~l~~~~l~~ll~r~fya~~~~~~~~~---~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 329 ALGLPFYALNDLLSRVFYALGDTKTPVR---ISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHhHHHHHHHHHHHHHHHccCcHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999888766443 3356778999999999999999999999999999999999999888765
No 10
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.80 E-value=4.5e-17 Score=153.42 Aligned_cols=247 Identities=16% Similarity=0.251 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 013102 28 GIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107 (449)
Q Consensus 28 ~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (449)
+++|+..++++|.++|||||.++...++.... ..+.+.|+++++.|+.+.+++ +..+...... ....++++
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~-~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~ 72 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSIL-SIVASLGLRQSLVRSAARDKQ-----DIRSLLRFSL---LVSLLLAV 72 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHH-----HHHHHHHHHH---HHHHHHHH
Confidence 57899999999999999999999977665544 446689999999995332221 2333322222 11222222
Q ss_pred HHHHHHHHhhcccCCchh-hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhHHhhccCchH-
Q 013102 108 GACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEK- 185 (449)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 185 (449)
+..++...... ..+++. ...+.++++........+.....++++.|++.....+......+.+..+.+.....+.+.
T Consensus 73 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (251)
T PF13440_consen 73 ILAILAILIAY-FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSI 151 (251)
T ss_pred HHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22221111111 123433 344555666666777777777788898999988888877777774444443333223222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 013102 186 GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP 265 (449)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~ 265 (449)
.++..+++++..+. .+.. . + + .++.+. +.. +++.++++.|+..+++.....++.|+++++.+.|+
T Consensus 152 ~~~~~~~~~~~~~~----~~~~-~--~----~--~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 216 (251)
T PF13440_consen 152 LLAFIISALLALLI----SFYL-L--R----R--KLRLSF-KFS-WRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGP 216 (251)
T ss_pred HHHHHHHHHHHHHH----HHHH-h--c----c--ccCCCc-hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 34444454443222 1211 1 1 0 111001 111 23479999999999999999999999999997799
Q ss_pred ccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHH
Q 013102 266 YNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299 (449)
Q Consensus 266 ~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~ 299 (449)
+++|.|+.|.++.+.+...+.+++++..+|.++|
T Consensus 217 ~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 217 EAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988778999999999998876
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.72 E-value=7.2e-13 Score=136.24 Aligned_cols=418 Identities=15% Similarity=0.072 Sum_probs=262.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHH---HHh-ccccCCCC
Q 013102 6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR---ACM-RADIKCDG 81 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~---a~~-r~~~~~~~ 81 (449)
++..|++.+-+.=.++++....+.+++-+.++.|++|+|+.+-++++..+...... +. .|+.. +++ |....+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~-~~~~~g~~~lvsq~~Ga~~- 84 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IG-LMVGMGTGSLLSIKRGEGD- 84 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HH-HHHhccHHHHHHHHhcCCC-
Confidence 44567788887888899999999999999999999999988877764433322211 11 12211 122 2222111
Q ss_pred ccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 013102 82 ASREENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLL 155 (449)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~ 155 (449)
+++.++.. ...+.+..+++..+++............-.++. ...+.+++++.++..+.......+|...+-
T Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~ 161 (453)
T PRK09575 85 ---LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESP 161 (453)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 11333333 233344444554444443332222222112321 246677778888877777776677777777
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHhhc-cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHH
Q 013102 156 RLRLVVETVATFSRCFTMCILIVKQ-YEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQ 233 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~ 233 (449)
+...+....+.+++......++... .|.. ..++.++++.+..+... .|+ . +++.+.+...+. .+.+.+..|+
T Consensus 162 ~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~-~~~---~-~~~~~~~~~~~~-~~~~~~~~~~ 235 (453)
T PRK09575 162 NLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGL-GYF---F-SSRANIRLTLKE-LRFNWSLAPK 235 (453)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHH-HHH---H-CCCceeEEeecc-CCcCHHHHHH
Confidence 7666666666666655554443221 1212 23566666665544322 111 1 111111000010 1112223478
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHH
Q 013102 234 LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIG 313 (449)
Q Consensus 234 ~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~ 313 (449)
.++.+.|...+.....+..-.-..+++++.+.++++.|+++.++.++.. .....+.++.-|.-++...++|.| +.+
T Consensus 236 il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvg~~~Ga~~~~---~~~ 311 (453)
T PRK09575 236 IVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGARQYD---NIK 311 (453)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhcCCChH---HHH
Confidence 8999999999888877777777777777766678999999999887643 566788899999999998776544 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCC-cCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhh
Q 013102 314 NSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 392 (449)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~-w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 392 (449)
+..+..+++....+.+........+|++..++-.++ =..+...+++++.++..|+.+++.....++.+.++++.-...+
T Consensus 312 ~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 391 (453)
T PRK09575 312 KLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFIS 391 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 678888888888887777777778889888754322 1111133688888888899999888888999999987644333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013102 393 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 442 (449)
Q Consensus 393 ~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 442 (449)
. ....++++.++++.+.+|..|+-+|..++..++......+.++..+
T Consensus 392 ~---~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~~ 438 (453)
T PRK09575 392 I---GNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDVK 438 (453)
T ss_pred H---HhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2224577888877766899999999999888887777666555443
No 12
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.70 E-value=5.8e-14 Score=138.71 Aligned_cols=313 Identities=16% Similarity=0.083 Sum_probs=195.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHHH-HHHHHH
Q 013102 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL-KVAWLT 98 (449)
Q Consensus 20 ~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (449)
+..++...+...+.+.++.+ +++++.|-++++..+ ......+ ..|++++..+.-.....++|+++.++.. +..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~a~~i-~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 3 ILANILQPLLGLVDTAFVGH-LGPVDLAAVSLGSSV-FMFLFSI-LMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhHHH-HHHHHHH-HHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 46778888888887777777 789999988886433 3332333 3566666654432211111111233332 334444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC-Cchh----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013102 99 LPLGIFITIGACFFVLWWQGLSY-SNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM 173 (449)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 173 (449)
...+++++++............. +++. ...+.++++..++.++.......+|.+.|++.....+..+.+......
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 45555555544443322222211 2222 245777888888888887777788888899988888877777666655
Q ss_pred HhHHh-hc--cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHH
Q 013102 174 CILIV-KQ--YEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL 249 (449)
Q Consensus 174 i~~~~-~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~~~~~l~~~~i~~~ 249 (449)
..++. .. .+..+ .++..+++++..+. .+.+..++++.+. .++.+.+.+....|+.++++.|.+.+++...
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~ 233 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLL----LLYYIKKAKKIGL--KWEGLLKPDWEVLKRLLKLGLPIAFRVILES 233 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHH----HHHHHHhCCCccc--ccccccCCCHHHHHHHHHhCchHHHHHHHHH
Confidence 44433 11 11122 24444444443322 2111121111111 1001111122235899999999999999999
Q ss_pred HHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 013102 250 LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLV 329 (449)
Q Consensus 250 ~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 329 (449)
+.++.|+.+++. .|++++|.|+.++++.+++. .+...++.+..|..++...++|.+ +.++..++.++....+++|
T Consensus 234 ~~~~~~~~i~~~-~g~~~v~~~~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 308 (342)
T TIGR00797 234 LSFALLALLVAR-LGSIALAAHQIALNVESLLF-MPAFGFGIAVSILVGQALGAGDPK---RAKEVARVALKLSLLLGLV 308 (342)
T ss_pred HHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHH
Confidence 999999998887 58999999999999998653 667789999999999987655444 4456778888888888888
Q ss_pred HHHhhhcchHHHHHHHh
Q 013102 330 FMAFGPSYSYSLVRLLY 346 (449)
Q Consensus 330 ~~~~~~~~a~~iv~ll~ 346 (449)
+..+....++++..++.
T Consensus 309 ~~~~l~~~~~~i~~~~~ 325 (342)
T TIGR00797 309 LAIILILFREFIARLFT 325 (342)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88887788889887654
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.70 E-value=5.9e-13 Score=137.04 Aligned_cols=417 Identities=15% Similarity=0.084 Sum_probs=253.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhH
Q 013102 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA 88 (449)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~ 88 (449)
-+.+.+-+.-.+..+....+.+++-+.++.| +++++.+-++....+.... ..+. .|+..+......+...++|.++.
T Consensus 11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~-~g~~~laa~~~~~~~~~~~-~~~~-~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 11 ARQLLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLAAVAIGTSIWLPV-ILFG-HGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCChHHH
Confidence 4556666678888899999999998888877 6888776666543332211 1122 34443332221111111111133
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHH
Q 013102 89 AKLLKV-AWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVE 162 (449)
Q Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~ 162 (449)
++..+. .+..+..++.++++..............++. ...+.++++..+...+.......+|...+.+......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 333332 3344444544444333322222122223332 1345666677777777666666778888888877777
Q ss_pred HHHHHHHHHHHHhHHhhc---c--Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHH
Q 013102 163 TVATFSRCFTMCILIVKQ---Y--EME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLAN 236 (449)
Q Consensus 163 ~~~~~~~~~~~i~~~~~~---~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~ 236 (449)
....+++......+++.. + +.. ..++..+++.+..+... ++. .++++.+..+.++...+.+....|+.++
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAML--IYI--KRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHH--HHH--HhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 777666666655443211 1 111 23555566655544322 111 1111000000111101112223488999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHH
Q 013102 237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (449)
Q Consensus 237 ~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~ 316 (449)
.++|...+.+........|..+++++ |+++++.|+++.++.++.. .+...+..+.-+..++...++|.+ +.++..
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~~---~~~~~~ 318 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRTL---DARQYA 318 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHH---HHHHHH
Confidence 99999999999998899999999985 7788999999999987654 455567777778888887665544 455677
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHH
Q 013102 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLL 396 (449)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 396 (449)
+..+++...++++........++++..++..|.=.......++.+.++..++.+++.....++++.++++.-...+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~--- 395 (456)
T PRK01766 319 YIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITF--- 395 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHH---
Confidence 77788887788877777778888988864332211111235777888878888888888888888888866443332
Q ss_pred HHH-HHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013102 397 VFS-VIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHY 440 (449)
Q Consensus 397 i~~-ii~i~l~~~li~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 440 (449)
+.. ++.++.++++.. .+|..|+.++..+...++.....++.++.
T Consensus 396 ~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 396 IAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 456677776664 47999999999999999988887777654
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.69 E-value=6.9e-12 Score=127.70 Aligned_cols=414 Identities=15% Similarity=0.078 Sum_probs=256.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHH-HHHHHHHHHHHHhHHHHHHHHh----ccccCCCCcc
Q 013102 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAV-QFHLFVTCVLFLSREGFRRACM----RADIKCDGAS 83 (449)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~-~~~~~~~~~~~l~~~g~~~a~~----r~~~~~~~~~ 83 (449)
..++.|+..+...+..++|+.+|+=-.+.++.+|.......-. +.-+-...--.+.|..++++.+ |.++++.| +
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~-~ 84 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE-E 84 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh-h
Confidence 4567777788899999999999999999999999954433111 1101111111233444556554 22222211 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCchhh----HHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 013102 84 REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQ----GLSYSNPYA----QAIFINGFACVLELLAEPLYILSQNLLLL 155 (449)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~l~~~~~~~~i~~l~~p~~~~~q~~~~~ 155 (449)
+..+..+..... ...+.++++++..+.+++.. ...++++.. ...+++.--..+.++..-....++-..+|
T Consensus 85 ~~~~f~~~v~~~--l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F 162 (518)
T COG0728 85 AARFFSRLVTGL--LTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRF 162 (518)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCee
Confidence 111222221111 11223334444333333332 111223322 12233333333333333333445555555
Q ss_pred hhhhhHHHHHHHHHHHHHHhHH-hhccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHH
Q 013102 156 RLRLVVETVATFSRCFTMCILI-VKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQ 233 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~ 233 (449)
...+ .+-+.--+..+... +..+..+. .++++.+-++.++...+..+.. .|+- +-...|.+..++. ..|+
T Consensus 163 ~~~a----~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~-l~~~---g~~~~p~~~~~~~-~lk~ 233 (518)
T COG0728 163 FIPA----FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPA-LRKA---GLLIKPRFGFKDP-GLKR 233 (518)
T ss_pred chhh----hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHc---ccccCCCCCCCch-hHHH
Confidence 5433 33333333333222 22222223 4566666666666654433322 2211 1112232212112 2367
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHH
Q 013102 234 LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIG 313 (449)
Q Consensus 234 ~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~ 313 (449)
..+.-.|........|++.-.|+.+-+.. .+..+..++-|+++-++|.-++-..+..+.+|.+||..+++|+++ .+
T Consensus 234 ~~~~~~p~~l~~sisQi~lli~~~iAS~l-~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~---~~ 309 (518)
T COG0728 234 FLKLMLPALLGVSISQINLLIDTAIASFL-AEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE---FL 309 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH---HH
Confidence 78888899999999999999998876554 556677888899999999888888999999999999987765443 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcC-CcCCCc---hhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHH
Q 013102 314 NSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (449)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~-~w~~a~---~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 389 (449)
+..++.+|+..++++|...+....|++++.++|.. +..+.. ...++..|+..++..++..+....+++..+++.
T Consensus 310 ~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt-- 387 (518)
T COG0728 310 KLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT-- 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc--
Confidence 67889999999999999999999999999999954 443322 236899999989999999999888898777754
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013102 390 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441 (449)
Q Consensus 390 ~~~~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 441 (449)
-.+...+..++|+++++.+.+.+|..|.+.|..++..+.....++..++-.
T Consensus 388 -P~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 388 -PMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred -ChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333456788999999999999999999999999988777777776666544
No 15
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.69 E-value=1.6e-12 Score=133.99 Aligned_cols=407 Identities=14% Similarity=0.006 Sum_probs=251.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHh----cc-ccCCCC
Q 013102 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RA-DIKCDG 81 (449)
Q Consensus 7 ~~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~----r~-~~~~~~ 81 (449)
+.-+.+.+.+.=.++++..+.+.+++-+..+.| +|+++..-+++...+.... ..+. .|+..+.. |+ .+.+.
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~alAa~~i~~~i~~~~-~~~~-~gl~~~~~~i~aq~~Ga~~~- 82 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALAGGGLGAASYSFV-SIFC-VGVIAAVGTLVAIRHGAGDI- 82 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCCh-
Confidence 456778888888899999999999999999999 6888777666644332222 1122 33333332 22 22221
Q ss_pred ccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 013102 82 ASREENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLL 155 (449)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~ 155 (449)
++.++..+.. +..+.++.+..++.... .......-.+|. ...+.+++++.....+.......+|...+.
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~ 157 (464)
T PRK00187 83 ----EGATRLAQAGLWLAWLLALVAALLLWNL-KPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRA 157 (464)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1333333222 23333344333332221 111122222332 145666777766666666666677888888
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHhhc---c--Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCccc
Q 013102 156 RLRLVVETVATFSRCFTMCILIVKQ---Y--EME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMS 229 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~~---~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (449)
+........+.+++.....++++-. + |.. +.++.++++....+... .|. .++++.++.+.+....+.+..
T Consensus 158 ~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (464)
T PRK00187 158 GPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALA-LYI---RRHPAYAAYPLRKGLSRPSRA 233 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHH-HHH---HhcchhhhhhhhccccCCCHH
Confidence 8777777777777766655544311 1 111 23555555544332221 222 221111100011000011122
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhH
Q 013102 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (449)
Q Consensus 230 ~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (449)
..|+.++.++|...+.+........|..++|+ .|+++++-|+++.++.++.. .+...+..+.-+..++...++|+|
T Consensus 234 ~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~-~G~~alAa~~i~~~i~~l~~-~~~~gi~~a~~~lvgq~~Ga~~~~-- 309 (464)
T PRK00187 234 ALRELWRLGLPIGGTYAVEVGLFTFAALCMGA-LGSTQLAAHQIALQIVSVAF-MVPVGLSYAVTMRVGQHYGAGRLL-- 309 (464)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 34899999999999999999999999999998 56789999999999987643 556678888889999998776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcC-CcCCCc----hhHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Q 013102 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVAT 384 (449)
Q Consensus 310 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~-~w~~a~----~~~il~i~~~~~~~~~~~~~~~~~~~a~~~ 384 (449)
+.++..+..+.+...++++........+++++.++-++ +-+.++ ..+++++.++..++..++......+.+.++
T Consensus 310 -~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 310 -EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 44456777777777777766666667788999887542 221111 235888888888888888888888888888
Q ss_pred hhHHHHhhhHHHHHH-HHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHH
Q 013102 385 EDQLKRSNDSLLVFS-VIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSA 434 (449)
Q Consensus 385 ~~~~~~~~~~~~i~~-ii~i~l~~~li~~--~G~~G~~~a~~i~~~~~~~~~~ 434 (449)
++.-...+ .+.. +++++++++++.. +|..|+-++..+...++.+...
T Consensus 389 ~~~~~~~~---~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~ 438 (464)
T PRK00187 389 ARTTFLIG---LACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALT 438 (464)
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence 86544332 2222 5777888877754 6899988888888877665443
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.54 E-value=4.5e-10 Score=115.28 Aligned_cols=415 Identities=15% Similarity=0.068 Sum_probs=274.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHh--HHHHHHHHhccccCCCCccch
Q 013102 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLS--REGFRRACMRADIKCDGASRE 85 (449)
Q Consensus 8 ~~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~--~~g~~~a~~r~~~~~~~~~~~ 85 (449)
..|.+.+-+.=.++++..+...+++=+....|+. +|+-+=++++..+......+.. ..|...-+-|.-..+|.
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~---- 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR---- 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch----
Confidence 4666777777778899999999999999999998 8888888886544322222121 23333222243222111
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh
Q 013102 86 ENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 159 (449)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~ 159 (449)
++.++.. +..|+++.+|+++.++............-+++. ...+.+..++.+...+.......++.+.|.|...
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 1333333 345556566655554444332221111112221 2467778888888888888888889999999988
Q ss_pred hHHHHHHHHHHHHHHhHHhhc---cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHH
Q 013102 160 VVETVATFSRCFTMCILIVKQ---YEM-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 235 (449)
Q Consensus 160 ~~~~~~~~~~~~~~i~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l 235 (449)
.....+.+...+.-.++++.. -|. .+-++.++++.+..+..+. +.++. ++.......+. .+.+.+..|+.+
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~--~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~ 244 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLI--YLLRK--KRLLSLFKKKL-LKPDRKLLKEIL 244 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHH--HHHhc--chhhhhhhhhc-cCCCHHHHHHHH
Confidence 888888888888887766542 222 2347777777777655432 21111 10000000110 011223358999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHH
Q 013102 236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS 315 (449)
Q Consensus 236 ~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~ 315 (449)
+.+.|...+.+........-..+++++. ++.++-|+++.++.++.. .....+.++.-|...+....+|.| +.++.
T Consensus 245 ~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~---~a~~~ 319 (455)
T COG0534 245 RLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYK---RARRA 319 (455)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHH---HHHHH
Confidence 9999999999998888888888887765 999999999999998754 566678888899888888776544 44456
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHH
Q 013102 316 LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (449)
Q Consensus 316 ~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 395 (449)
.+..+++...++..........+++++.++..+.=.......++.+.+...++.+++......+.+.++++.-...+
T Consensus 320 ~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~--- 396 (455)
T COG0534 320 ARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIIS--- 396 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH---
Confidence 77777777777766666666778899998666511111123688888888888888888888889888886533222
Q ss_pred HHHH--HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013102 396 LVFS--VIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYF 441 (449)
Q Consensus 396 ~i~~--ii~i~l~~~li~~-~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 441 (449)
+.+ .+.+++.+++... +|..|.-++..+...++......+.++..
T Consensus 397 -~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 397 -LLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred -HHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 3346777777777 99999999999999999998887777653
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.53 E-value=9.1e-10 Score=112.75 Aligned_cols=414 Identities=12% Similarity=0.015 Sum_probs=236.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHH---HHHHHHhHHHHHHHHh-ccccCCCCccc
Q 013102 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFV---TCVLFLSREGFRRACM-RADIKCDGASR 84 (449)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~---~~~~~l~~~g~~~a~~-r~~~~~~~~~~ 84 (449)
.+.+.+-+.=.+++|..+.+.+++-+..+.|+.++++..-+++...+.. .....+. .|.. +++ |+...+|.
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~-~g~~-~lvsq~~Ga~~~--- 82 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLR-MSTT-GLTAQAFGAKNP--- 82 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHhCCCCH---
Confidence 5667777778889999999999999999999878876665555432221 1111111 2221 222 22211111
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhh
Q 013102 85 EENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLR 158 (449)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~ 158 (449)
++.++.. +..++.+..+++++++............-.++. ...+.+++++.+...+.......+|...|.+..
T Consensus 83 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 161 (441)
T PRK10367 83 -QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAP 161 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 1223332 233333334443332222111111111112322 145666677777777777766778888888887
Q ss_pred hhHHHHHHHHHHHHHHhHHhhcc-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccCCcccccHHHHH
Q 013102 159 LVVETVATFSRCFTMCILIVKQY-EME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLAN 236 (449)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~~l~ 236 (449)
......+.++..+....+++... |.. ..++.++++.+..+... ++.++. ++.+..+..+.+++ .+...|+.++
T Consensus 162 ~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~il~ 236 (441)
T PRK10367 162 VILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGL--LMVRKV--LKLRGISLEMLKTA-WRGNFRRLLA 236 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH--HHHHHH--HhhccccHHHhhhh-hHHHHHHHHH
Confidence 77777777776666655443221 222 24677777776654432 222111 11110000001111 0112478899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHH
Q 013102 237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (449)
Q Consensus 237 ~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~ 316 (449)
.+.|...+..........-..+++++ |+++++-|+++.++.++.. .....+.++.-|.-++...++|.|+ .++..
T Consensus 237 ig~P~~~~~~~~~~~~~~~~~~~~~~-G~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~~~---a~~~~ 311 (441)
T PRK10367 237 LNRDIMLRSLLLQLCFGAITVLGARL-GSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDGSQ---LLDVW 311 (441)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCHHH---HHHHH
Confidence 99999999888888777777888775 6789999999999987653 5556788899999999987766544 44566
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCC-cCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHH
Q 013102 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (449)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~-w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 395 (449)
++..++....+..........+++++.++ .++ =.......++++.+...+...+..+.+..+.+.++..+ .+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lF-t~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~d----t~~~ 386 (441)
T PRK10367 312 RAACRQSGIVALLFSLVYALAGEHIIALL-TSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAE----MRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHH----HHHH
Confidence 66666666666655555556677888874 332 00000224666665432222233344444455455321 2222
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013102 396 LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQV 443 (449)
Q Consensus 396 ~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 443 (449)
+..+.+......+..+.+|..|.-++..+...++......+.++-+++
T Consensus 387 ~~~~~~~~~~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~~~ 434 (441)
T PRK10367 387 MAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333345678999999999999999988877666655544
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.44 E-value=1.1e-08 Score=105.92 Aligned_cols=411 Identities=8% Similarity=-0.077 Sum_probs=234.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHH---h-cc-ccCCCCcc
Q 013102 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---M-RA-DIKCDGAS 83 (449)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~---~-r~-~~~~~~~~ 83 (449)
-+.+.+-+.=.++.+......+++.+..+.| +|+++..-+++...+...... +. .|+..+. + |+ .+.+.|
T Consensus 28 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~~-~~-~gl~~g~~~lvsq~~Ga~~~~-- 102 (478)
T PRK10189 28 WREITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIMA-FF-AAIDLGTTVVVAFSLGKRDRR-- 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcCCCHH--
Confidence 3455666666778888888889999988887 799887777765444222111 11 2232222 2 22 222211
Q ss_pred chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccC--Cchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 013102 84 REENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLL 155 (449)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~ 155 (449)
+.++.. ...++.+..++.++++............. .|+. ...+.++.+..+...+.......+|...|-
T Consensus 103 ---~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 179 (478)
T PRK10189 103 ---RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT 179 (478)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 233333 23333334444444433332212111111 2332 135566667777777777766677877787
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHhhc---c--Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc-ccCCcc
Q 013102 156 RLRLVVETVATFSRCFTMCILIVKQ---Y--EME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPF-RLGNMM 228 (449)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~~---~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ 228 (449)
+....+...+.+++......+++.. + |.. ..++.++++.+..++.. ++.+. +.+...+...+. ..+.+.
T Consensus 180 ~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 255 (478)
T PRK10189 180 KIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAII--WVLMI--GFNPALRISLKSYFKPLNF 255 (478)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHH--HHHHh--ccCccceeeeccccccCCH
Confidence 7777777666666655555544321 1 212 23566677766644331 22111 100000000000 000112
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchh
Q 013102 229 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 308 (449)
Q Consensus 229 ~~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~ 308 (449)
...|+.++.+.|...+.+...+..-.-..++++ .|++.+.-|+++.++.++.. .....+.++.-|.-++..-.+|.++
T Consensus 256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~-~G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~~~ 333 (478)
T PRK10189 256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAG-MGTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQIAQ 333 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 235789999999888777765554444445554 36789999999999987654 4556788888999999887665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHH
Q 013102 309 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 388 (449)
Q Consensus 309 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~ 388 (449)
.++..+...++...+++.+.......+++++.+.-.|+=.-......+++.+.+.|+.+++.+....+.+.++++.-
T Consensus 334 ---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~ 410 (478)
T PRK10189 334 ---AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYA 410 (478)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHH
Confidence 44556666666666665555555566778888653321111112357888888888888887777777777777553
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 389 KRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 389 ~~~~~~~~i~~ii~i~l~~~li~--~~G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
...+.. ..-++-+++.+++.. .+|..|+-++..+...++........+
T Consensus 411 ~~i~~~--~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~ 460 (478)
T PRK10189 411 MWVSML--GMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV 460 (478)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211 111344455555442 479999999999988888877654443
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.28 E-value=3.2e-10 Score=116.76 Aligned_cols=201 Identities=12% Similarity=0.094 Sum_probs=155.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+.++++.|...+.+...+.+..|..++|++ |.++++-++.+.++.... ..+...+..+..|..++...++|++
T Consensus 11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~--- 85 (456)
T PRK01766 11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE--- 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH---
Confidence 48999999999999999999999999999995 778889999998875443 3455667888899999988765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 390 (449)
+.++..+..+.+...+++++.......+++++.++..|+-......++++++++..|+..++.....++.+.++++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 44567777888888888877777777788888875544321111236888988888999999999989999888866444
Q ss_pred hhhHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 391 SNDSLLVFSVIYIVMNVILI------QSAGSVGLILANSLNMILRIIYSAIFIKH 439 (449)
Q Consensus 391 ~~~~~~i~~ii~i~l~~~li------~~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 439 (449)
.+ .+..++|++++++++ +.+|..|+++|..++..+.......++++
T Consensus 166 ~~---~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 166 IG---FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 445578899998887 35799999999999988887777766654
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.27 E-value=5.1e-10 Score=115.15 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=156.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+.++.+.|...+++...+++-.|++++|++.|.++++.|+.+.++-++.. .+..-+....-+..++...++|+|
T Consensus 11 ~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~~--- 86 (453)
T PRK09575 11 YRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDLE--- 86 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCHH---
Confidence 4899999999999999999999999999999999999999999998876543 334445555667788887665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 390 (449)
+.++..+..+.+...++++........+++++.++.+|.=......++++++++..|+..++...+.++.+.++++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 45567888888888888888888788899999875433211111337999999888888888777777887777754332
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 391 SNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 391 ~~~~~~i~~ii~i~l~~~li~--~~G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
...+..++|++++++++. .+|..|+++|..++..+.......++.
T Consensus 167 ---~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~ 213 (453)
T PRK09575 167 ---LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF 213 (453)
T ss_pred ---HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556889999999886 479999999999999999888776654
No 21
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.24 E-value=8.8e-10 Score=113.13 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=164.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+.+++++|++.+++...+++-.|.+++|++. +++++-=+++..+-.++. ....-+....-+..++..-++|++
T Consensus 16 ~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~~~~--- 90 (455)
T COG0534 16 LKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAGDRK--- 90 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCCchH---
Confidence 589999999999999999999999999999998 788887788877766543 455567777788889987665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 390 (449)
+.++..+..+.+...++++........+++++.++.+++=....+.+++++.++..|+..++...+.+..+.++++.-.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m- 169 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM- 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH-
Confidence 4556778788888888877777778899999998876432222234799999999999999999999999999986533
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013102 391 SNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKHY 440 (449)
Q Consensus 391 ~~~~~~i~~ii~i~l~~~li~~----~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 440 (449)
..+.+..+.|++++++++.. +|..|+++|++++..+.......++.+.
T Consensus 170 --~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 170 --YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred --HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34467789999999999976 7999999999999999988888887754
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.23 E-value=1.6e-09 Score=110.97 Aligned_cols=202 Identities=18% Similarity=0.184 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+.++.++|...++++..+++-.|..++|++.|+++++-++++.++.+... .+..-+....-+..++...++|+|
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~~--- 83 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLF-MLLLFLRMSTTGLTAQAFGAKNPQ--- 83 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHH---
Confidence 3789999999999999999999999999999888888999999988876543 444456666777888887666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 390 (449)
+.++..+..+.+...++++...++....+.++.++-.|+=......++++++++..|+..++....+++.+.++++.-..
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 44556777777777777777777666777777654333211111347999999989999999888899999998865332
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 391 SNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKH 439 (449)
Q Consensus 391 ~~~~~~i~~ii~i~l~~~li~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 439 (449)
...+..++|++++++++. .+|..|+++|+.++..+.......+..+
T Consensus 164 ---~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 ---LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566889999999886 4699999999999998877776665553
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.19 E-value=1.9e-09 Score=106.48 Aligned_cols=192 Identities=22% Similarity=0.232 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHH
Q 013102 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (449)
Q Consensus 240 ~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~ 319 (449)
|.+.+.+..++....|++++|++ |++++|.|+.|.++.+.. ..+...+.++..|..++...++|+| +.++..+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~---~~~~~~~~~ 75 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHL-GPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQ---RLGRQAQQS 75 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChH---HHHHHHHHH
Confidence 56778899999999999999995 688999999999987644 5778889999999999987665443 445577778
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHH
Q 013102 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFS 399 (449)
Q Consensus 320 ~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ 399 (449)
..+...+++++..+....++++..++.+++-......++++++++..++..++.....++++.++.+..... ..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~i~~~ 152 (342)
T TIGR00797 76 LLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYI---TLIGN 152 (342)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH---HHHHH
Confidence 888888888888777788899988654232111112368899998888888887777777777766553332 34455
Q ss_pred HHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 400 VIYIVMNVILIQ-SAG---SVGLILANSLNMILRIIYSAIFIKH 439 (449)
Q Consensus 400 ii~i~l~~~li~-~~G---~~G~~~a~~i~~~~~~~~~~~~~~~ 439 (449)
+++++.+++++. .+| ..|++++..++..+.......+.++
T Consensus 153 ~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 153 VINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888887777 555 9999999999998888887777665
No 24
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.14 E-value=3.9e-09 Score=109.18 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=153.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhH
Q 013102 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (449)
Q Consensus 230 ~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (449)
+.|+.++.++|...+++...+.+-.|..++|+ .|+++++-++++.++..+.. .+..-+....-+..++...++|+|
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~-~~~~gl~~g~~~lvsq~~Ga~~~~-- 102 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIM-AFFAAIDLGTTVVVAFSLGKRDRR-- 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHH--
Confidence 35899999999999999999999999999998 58899999999999976543 455567777888888888766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhc-C--CcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChh
Q 013102 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG-K--KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 386 (449)
Q Consensus 310 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G-~--~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~ 386 (449)
+.++..+..+.+...++++........+++++.++.| + +=.+. ..++++++++..|...++...+.++.+.++++
T Consensus 103 -~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~-a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 103 -RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKAL-ALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 4445677777777777777776667778889887652 2 11111 23689999988899998888888899988886
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013102 387 QLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI 437 (449)
Q Consensus 387 ~~~~~~~~~~i~~ii~i~l~~~li~------~~G~~G~~~a~~i~~~~~~~~~~~~~ 437 (449)
.-...+ .+..++|++++++++. .+|..|+++|..++..+......++.
T Consensus 181 ~~~~i~---~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~ 234 (478)
T PRK10189 181 IPLLIN---GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL 234 (478)
T ss_pred HhHHHH---HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 3466788899998884 56999999999999888777665544
No 25
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.05 E-value=1.8e-08 Score=104.05 Aligned_cols=197 Identities=17% Similarity=0.089 Sum_probs=147.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+.++.+.|.+.+.+...+.+-.|.+++|++ |.++++-++.+.++-+... .+...+.+..-|..++...++|++
T Consensus 9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~~--- 83 (464)
T PRK00187 9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDIE--- 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChh---
Confidence 48899999999999999999999999999995 8889999999999976643 455667778888889988766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCC-chhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDG-EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a-~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 389 (449)
+.++.++..+.+...++++...... .+++++.+ +|.+=+.. ....+++++++..|...++.....++.+.++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l-~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLL-FGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4445677777777777766655544 56788776 44421111 123689999888888888888888999988885533
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013102 390 RSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI 437 (449)
Q Consensus 390 ~~~~~~~i~~ii~i~l~~~li~------~~G~~G~~~a~~i~~~~~~~~~~~~~ 437 (449)
. ...+..++|++++++++. .+|..|+++|..++.....+....++
T Consensus 162 ~---~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~ 212 (464)
T PRK00187 162 V---ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYI 212 (464)
T ss_pred H---HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 2 334566889999998874 36899999999887655554443333
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.78 E-value=1.1e-06 Score=91.14 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHH
Q 013102 236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS 315 (449)
Q Consensus 236 ~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~ 315 (449)
+-+.|.+..++...+.+-.|+.++++..|+++.|.|+.+..+.+........-+.+..-+..++...++|+ ++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~---~~~~~~ 79 (488)
T TIGR02900 3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDR---KNIKKI 79 (488)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccch---hhHHHH
Confidence 34568888999999999999999999999999999999998876654333345777777777776544433 344456
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHH
Q 013102 316 LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (449)
Q Consensus 316 ~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 395 (449)
++....+...+++++.......++.+...+++++ + ....++++++..|+..+++..++++++.++.+.....+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 152 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE--R--SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQ--- 152 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh--h--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHH---
Confidence 6666666666666665555566777766554433 1 12467888877888888888888888777776544333
Q ss_pred HHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 396 LVFSVIYIVMNVILI-------QSAGSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 396 ~i~~ii~i~l~~~li-------~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
.+.++++++....++ ..+|..|.++++.++..+...+...+.+
T Consensus 153 ~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~ 202 (488)
T TIGR02900 153 VIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFK 202 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333322221 2456778888877777666666554443
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.66 E-value=5.4e-06 Score=86.34 Aligned_cols=197 Identities=11% Similarity=0.159 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccc-hhHHHHhhhhhHHHHHHH-hhhhhhhHHHHHHHhcCCCchhHHHH
Q 013102 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKI 312 (449)
Q Consensus 235 l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~-G~Y~~A~~l~~l~~~~~~-~pi~~~~~p~fs~~~~~~~~~~~~~l 312 (449)
.+-...++..++.+.+++-.|+++++++.|+++. |.|+.+..+-+.....+. ..+..+.-|...+..+++ |+.
T Consensus 3 ~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~-----~~~ 77 (502)
T TIGR01695 3 LKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE-----KEA 77 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-----hHH
Confidence 4555677788899999999999999999999999 999999998765543333 346666666655443221 223
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhcchHHHHHHHhcCCcCCCc---hhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHH
Q 013102 313 GNSLAEALKLVLLIG-LVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 388 (449)
Q Consensus 313 ~~~~~~~~~~~~~i~-~~~~~~~~~~a~~iv~ll~G~~w~~a~---~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~ 388 (449)
++.+.........++ +.....+...+|.+..+ +++...+.. ..++++++++..|+..+++..++++++.++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISL-LAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence 333333333333222 23334444566777775 433222221 2368999999899999988888888887776554
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 013102 389 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKHY 440 (449)
Q Consensus 389 ~~~~~~~~i~~ii~i~l~~~li~~~G~~G~~--~a~~i~~~~~~~~~~~~~~~~ 440 (449)
...+ .+..+.+++..+++.+.+|..|++ +++.++..+...+.+.+.+|.
T Consensus 157 ~~~~---i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 157 SFSP---ILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHH---HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333 334455555555556778999988 999998888888877666553
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.32 E-value=7.5e-07 Score=77.86 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHH
Q 013102 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (449)
Q Consensus 240 ~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~ 319 (449)
|...+.+...+....|..++|++ |+++++.|+++.++.+... .+...+.+...+..++...++|.|+.+ +..++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~-~~~~g~~~a~~~~~s~~~G~~~~~~~~---~~~~~~ 75 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILF-MLIFGLATALQILISQNIGAGDYKRAK---KVVRQG 75 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCSSSTTTCC---CHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHh-hhcccccccccceeecccccccccccc---cccccc
Confidence 66778899999999999999999 9999999999999997654 677789999999999988776655544 467778
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHH
Q 013102 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFS 399 (449)
Q Consensus 320 ~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ 399 (449)
+.+...+++++..+....++++..++..|+=..+....++++.++..|+..++.....+..+.++++... .......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~~~~~ 152 (162)
T PF01554_consen 76 LLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAM---YISIISF 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCH---HHHHHHH
T ss_pred cccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHH---HHHHHHH
Confidence 8888888887777767777777776433332111134677777777777777666655555555553322 2223334
Q ss_pred -HHHHHHHH
Q 013102 400 -VIYIVMNV 407 (449)
Q Consensus 400 -ii~i~l~~ 407 (449)
++++++++
T Consensus 153 ~~~~i~l~y 161 (162)
T PF01554_consen 153 WIINIPLAY 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHh
Confidence 55555554
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=98.27 E-value=0.00011 Score=74.77 Aligned_cols=190 Identities=15% Similarity=0.061 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHH
Q 013102 236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS 315 (449)
Q Consensus 236 ~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~ 315 (449)
+-+.+.....+.+.+.+-.-.-++.++.|+++.|.++....+..........-+.++.....++. ++| .++.++.
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~---~~~~~~~ 79 (416)
T PRK15099 5 KASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ---PQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC---HHHHHHH
Confidence 34445566677777777777889999999999999999988776554333344444444444443 222 2334456
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHH
Q 013102 316 LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (449)
Q Consensus 316 ~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 395 (449)
....+.+...++......+...++++...+++++ + ...++.+..+..+...++...++...+.++++. .....
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~---~~~~~ 152 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT--D--YQGVVRAVALIQMGIAWANLLLAILKGFRDAAG---NALSL 152 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 6666666666666555555667778877666554 2 224566555544455555555555555444432 22334
Q ss_pred HHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 396 LVFSVIYIVMNVILI-QSAGSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 396 ~i~~ii~i~l~~~li-~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
.+..+.|+++ ++++ ...|..|+++|+.++..+...+..+++.
T Consensus 153 ~~~~~~~i~l-~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~ 195 (416)
T PRK15099 153 IVGSLIGVAA-YYLCYRLGGYEGALLGLALVPALVVLPAGIMLI 195 (416)
T ss_pred HHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665 3333 3349999999999988777666655554
No 30
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.99 E-value=0.00082 Score=69.17 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=115.7
Q ss_pred CCccchhHHHHhhhhhHHHHHHH-hhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 013102 264 TPYNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLV 342 (449)
Q Consensus 264 ~~~~~G~Y~~A~~l~~l~~~~~~-~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv 342 (449)
..++.-.|.+|.++-+.+...+. .+++.+.-|.+++.. ++++|+.+ +..+....+...+++.+...+...+|+++
T Consensus 7 ~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~---~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 7 ASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEAR---RFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556689999999988876665 589999999999998 44333333 34555666666666666666677888999
Q ss_pred HHHhcCCcCCCc---hhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hH
Q 013102 343 RLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG---SV 416 (449)
Q Consensus 343 ~ll~G~~w~~a~---~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~li~~~G---~~ 416 (449)
.++. +...+.. ....++++.++.++..++++..+..++..+-.. ....-.+..+..++...++.+..| ..
T Consensus 83 ~~la-~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~---~~~~~l~~N~~~I~~~~~~~~~~~~~~i~ 158 (451)
T PF03023_consen 83 RLLA-PGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLI---PALSPLLFNLSIILSLLLLSNSWGQENIY 158 (451)
T ss_pred HHHC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchH---HHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 8755 4443332 235788888888988888887766665433221 111112222333333334456678 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013102 417 GLILANSLNMILRIIYSAIFIKHYFQVWR 445 (449)
Q Consensus 417 G~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++++|..+....+..+-....+|....++
T Consensus 159 ~la~g~~~g~~~~~l~~l~~~~~~~~~~~ 187 (451)
T PF03023_consen 159 ALAWGVLIGAIIQFLIQLPYLRRFGFRFR 187 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 88999999998888888888887654433
No 31
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.98 E-value=8.2e-05 Score=63.79 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 359 LRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 359 l~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~li~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
++++++...+..+++......++.++++...+.+ .+..++|++++++++|.+|..|+++|.+++..........+.+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~---~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIIT---LIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887788888888888889888887755444 6788999999999999999999999999999999999999999
Q ss_pred Hhhhcc
Q 013102 439 HYFQVW 444 (449)
Q Consensus 439 ~~~~~~ 444 (449)
|..+.+
T Consensus 79 k~~~~~ 84 (146)
T PF14667_consen 79 KKIGIK 84 (146)
T ss_pred HHhCCC
Confidence 887554
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.81 E-value=0.008 Score=56.59 Aligned_cols=188 Identities=13% Similarity=0.166 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHH
Q 013102 237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (449)
Q Consensus 237 ~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~ 316 (449)
-+.+....++...+..-.-..++.+..|+++.|.|+.+..+.++........++++.....++..++ .++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-----~~~~~~~~ 78 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-----KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----HHHHHHHH
Confidence 3445556667777777888899999999999999999999987765444455666554444443221 11121222
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHH-HHHhhhhHHHHHHHHhcChhHHHHhhhHH
Q 013102 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV-VVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (449)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 395 (449)
.... ....++..+..... .+......+++.. ...++.... +........+.+..+..+ .+......
T Consensus 79 ~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 145 (273)
T PF01943_consen 79 SSVL-FLLLIFSLIFLLIL----LIASFFGNPSLSL-----ILIILALLILILSSLSSVFSGLLQGLQR---FKYIAISN 145 (273)
T ss_pred HHHH-HHHHHHHHHHHHHH----HHHHHcCCchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 2222 22222222222222 2222223333322 222222211 234444444444443322 22233333
Q ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013102 396 LVFSVIYIVMNVILIQSA-GSVGLILANSLNMILRIIYSAIFIKHYFQ 442 (449)
Q Consensus 396 ~i~~ii~i~l~~~li~~~-G~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 442 (449)
....+...+....+.... +..+.+.+..+...+.....+.+.+|.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T PF01943_consen 146 IISSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR 193 (273)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444433 37888888888888888888888887653
No 33
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=97.60 E-value=0.019 Score=59.37 Aligned_cols=203 Identities=13% Similarity=0.107 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-ccchhHHHHhhhhhHHHHHHHh-hhhhhhHHHHHHHhcCCCchhH
Q 013102 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFL-PFEESSYATFARSASGQYPQKS 309 (449)
Q Consensus 232 k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~-~~~G~Y~~A~~l~~l~~~~~~~-pi~~~~~p~fs~~~~~~~~~~~ 309 (449)
..+++-+......++.+.+..-.-..++...+|. ...-.|++|.++-+..-|++-. ..+++.-|.|.+..+++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 4566666777777788888888888889988887 7778999999999988766544 4688889999999876544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCc---hhHHHHHHHHHHHHHhhhhHHHHHHHHhcChh
Q 013102 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATED 386 (449)
Q Consensus 310 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~---~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~ 386 (449)
++. -+.+......+.+.+...+...+|++++.++++.|.+.. .....+++.+|.++..+.... +++.++.
T Consensus 87 ~~f---~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~----~aiLNs~ 159 (518)
T COG0728 87 RFF---SRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALF----GAILNSR 159 (518)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcc
Confidence 433 233333444444455555556677999889999873221 224567887777776665544 4444443
Q ss_pred HHH-HhhhHHHHHHHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013102 387 QLK-RSNDSLLVFSVIYIVMNVILIQS-AG-SVGLILANSLNMILRIIYSAIFIKHYF 441 (449)
Q Consensus 387 ~~~-~~~~~~~i~~ii~i~l~~~li~~-~G-~~G~~~a~~i~~~~~~~~~~~~~~~~~ 441 (449)
+.+ -....-....+.-+.....+.+. .+ ..+++++..+..++...+-+...+|..
T Consensus 160 ~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g 217 (518)
T COG0728 160 NRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG 217 (518)
T ss_pred CeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 321 11111112222222233333332 34 467888888889999988888888764
No 34
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.46 E-value=0.018 Score=53.71 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=84.9
Q ss_pred hhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013102 255 EKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFG 334 (449)
Q Consensus 255 d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 334 (449)
-.+++.+..|++|.|.|+.+..+.++.........++... +. .++++ ++.++..+..+.....+++....+.
T Consensus 7 ~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 7 FLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARDK---QDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999987765433334444332 21 11222 2333344433333333333333222
Q ss_pred hcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhhhHHHHHHHHHHHHHHHHH-Hhh
Q 013102 335 PSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILI-QSA 413 (449)
Q Consensus 335 ~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~i~~ii~i~l~~~li-~~~ 413 (449)
+ .+...++++ + ..+++.+.+...+...++........+..+.+.....+ .+..+...+....+. ...
T Consensus 79 ~-----~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 146 (251)
T PF13440_consen 79 I-----LIAYFFGDP--E--LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALID---IVRSLLRLLLLVLLLYLGL 146 (251)
T ss_pred H-----HHHHHhCCh--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 2 122233331 1 11345555555566666666665566555554433222 233332222222111 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013102 414 GSVGLILANSLNMILRIIYSAIFIK 438 (449)
Q Consensus 414 G~~G~~~a~~i~~~~~~~~~~~~~~ 438 (449)
+..+..++..+.......+.++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 147 NLWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888888877776555
No 35
>PRK10459 colanic acid exporter; Provisional
Probab=97.35 E-value=0.019 Score=59.73 Aligned_cols=181 Identities=12% Similarity=0.049 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHHHH
Q 013102 233 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 312 (449)
Q Consensus 233 ~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l 312 (449)
+..+=..|....++...+..-.-..++.++.||++.|.|+.+..+.+.........++++. .++++++ .++.
T Consensus 6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai-------i~~~~~~-~~~~ 77 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI-------IQRQDIS-HLQL 77 (492)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH-------HhcccCC-HHHH
Confidence 3445556677778888888888899999999999999999999887765533334454433 1122222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHHhh
Q 013102 313 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 392 (449)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 392 (449)
+..+ .+....+..........++.+- .+++++. ..+.+.+.+...++..++...........+ .+...
T Consensus 78 ~~~~----~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~---f~~~a 145 (492)
T PRK10459 78 STLY----WLNVGLGIVVFVLVFLLSPLIA-DFYHNPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELE---FNKLA 145 (492)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHH-HHcCChh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhh---hHHHH
Confidence 2222 2222233322222223344443 3455432 124566665544444443333323332222 22233
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHH
Q 013102 393 DSLLVFSVIYIVMNVILI-QSAGSVGLILANSLNMILRIIYS 433 (449)
Q Consensus 393 ~~~~i~~ii~i~l~~~li-~~~G~~G~~~a~~i~~~~~~~~~ 433 (449)
....+..+...+....+. ..+|..|.+++..++..+.....
T Consensus 146 ~~~~~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~ 187 (492)
T PRK10459 146 KIEISAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLF 187 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 333333344343333322 34688888888888776665443
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=96.28 E-value=0.53 Score=48.66 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhH
Q 013102 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA 88 (449)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~ 88 (449)
-+...+-.......+..+.+.+-+=..++.+.++|++.|.++.+..+. .....+. ..++.++...-.+..++.++++.
T Consensus 212 ~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~-~~~~~~~-~~l~~~l~P~~s~~~~~~~~~~~ 289 (480)
T COG2244 212 LKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV-SLLLIVA-SALNRVLFPALSRAYAEGDRKAL 289 (480)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHH-HHHHHHH-HHHHHHHHHHHHHHHHcCcHHHH
Confidence 444455556778889999999999999999999999999999544332 2222222 33444443221111111111111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCchh---hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHH
Q 013102 89 AKLLK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV 164 (449)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~ 164 (449)
++..+ ..-.....+....+.+...........+++++ ...+.++++..++..+..+....++...+.+...+....
T Consensus 290 ~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 369 (480)
T COG2244 290 KKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLI 369 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 12211 11111122222323223322222223355554 357778888888888888888888888888877777777
Q ss_pred HHHHHHHHHHhH
Q 013102 165 ATFSRCFTMCIL 176 (449)
Q Consensus 165 ~~~~~~~~~i~~ 176 (449)
+.+.+.+....+
T Consensus 370 ~~i~~~~l~~~l 381 (480)
T COG2244 370 SALLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHhHH
Confidence 766666655444
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=96.22 E-value=0.14 Score=52.90 Aligned_cols=199 Identities=16% Similarity=0.088 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHHhhhhhHHHHHHHhhhhhhhHHHHHHHhcCCCchhHH
Q 013102 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (449)
Q Consensus 231 ~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~~~~~~G~Y~~A~~l~~l~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (449)
.|+++..+.|.....+.++...-.|...+|+.... +++-.+++.+..+.....+..-+..+.-+..++....++. +
T Consensus 27 ~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~---~ 102 (473)
T KOG1347|consen 27 SKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF---T 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc---c
Confidence 37899999999999999999999999999999888 9999999988877644445555555555555666544333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHhcChhHHHH
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~G~~w~~a~~~~il~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 390 (449)
.+....++........++|.... ..+++++...+..+.=....+..+.++.....+....+...+.|..+.... .-
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~---~~ 178 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSIT---LP 178 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCc---hH
Confidence 33334555555555555555543 455667776544433222212223333333333444444555555533322 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013102 391 SNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSAIFI 437 (449)
Q Consensus 391 ~~~~~~i~~ii~i~l~~~li~~--~G~~G~~~a~~i~~~~~~~~~~~~~ 437 (449)
......+....++.++++++.. +|..|++++..++.-.....-.-|+
T Consensus 179 ~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi 227 (473)
T KOG1347|consen 179 LLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYA 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Confidence 2233345668899999988864 5778988888887655544444333
No 38
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=94.48 E-value=0.091 Score=45.38 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhhHHHHH-HHHHHH
Q 013102 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL-KVAWLT 98 (449)
Q Consensus 20 ~~~q~~~~~l~fi~~~iLaRlL~p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (449)
++.+........+.+.+..|+ |+|+.+-+++...+...... --.|+..+......+.-.++|.++.++.. ...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~--~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM--LIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh--hcccccccccceeecccccccccccccccccccccc
Confidence 456777888888888888888 99999998886655443322 23555555543222211111111111121 233344
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchh-----hHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHH
Q 013102 99 LPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVE 162 (449)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~ 162 (449)
...+++++++..+..........+++. ...+++.++..++.++.......+|...|.+.-...+
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 148 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYIS 148 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 445555554433332222222222332 1445556666666655555444455555555444433
No 39
>COG4267 Predicted membrane protein [Function unknown]
Probab=69.71 E-value=1.3e+02 Score=30.19 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhC-------hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCC
Q 013102 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLT-------EADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79 (449)
Q Consensus 13 ~~~~~~~~~~q~~~~~l~fi~~~iLaRlL~-------p~~fGlva~~~~~~~~~~~~l~~~g~~~a~~r~~~~~ 79 (449)
.++..+..+-.....+++........|+-+ |...=+..+ +...+..+.++ .|++..++|..+++
T Consensus 21 lrA~~Ys~iVs~gPwll~i~~i~~i~iis~~~~v~~~~~~~Flssv--~Y~~ifS~IiT-gg~q~iiTRfiSD~ 91 (467)
T COG4267 21 LRAYFYSGIVSVGPWLLSIVSIILIGIISSQIVVPRVLSPQFLSSV--TYCFIFSQIIT-GGFQLIITRFISDC 91 (467)
T ss_pred HHHHHHhHhheecchHHHHHHHHHHHHHhcccccCCcchHHHHHHH--HHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 344455555566666677766666666666 333333332 22333334344 89999999997764
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=42.81 E-value=1.9e+02 Score=23.79 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhHHhhccCchHHHHHHHHHHHHHHHH
Q 013102 129 IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASL 200 (449)
Q Consensus 129 l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (449)
+.+++++.++.++..|.-..++...|.|...+.+....+++.+....++-. ++..+.+++..+..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~----~G~~Gaa~a~~i~~~~~ 69 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR----FGIYGAAIATAISEIVS 69 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHH
Confidence 345677777888888887788888888888888877777777776665322 33444444444444443
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=38.15 E-value=4e+02 Score=26.14 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhHH--hh-c--cCchH----HHHHHHHHHHHH
Q 013102 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILI--VK-Q--YEMEK----GIVFALSQVAYA 197 (449)
Q Consensus 127 ~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~-~--~~~~~----~~~~~~~~~~~~ 197 (449)
..+.++.+-.++.++...+.-.+-|+ | +..+...+.+.+.+..+..+ +. . +..+. +.+...+..+-.
T Consensus 130 ~a~l~L~llPfl~alr~~~qGILik~-r---~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~ 205 (345)
T PF07260_consen 130 RAFLYLTLLPFLDALRWIHQGILIKH-R---HSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRF 205 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhc-c---ceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHH
Confidence 46667777777777666555344333 2 33344445555555544321 11 1 11122 233334443333
Q ss_pred HHHHHHHHHHHHHhcccccCcccccccCC---cccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-CC----ccch
Q 013102 198 ASLFLGYWGYFLLFGAFKTSDLFPFRLGN---MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD-TP----YNQA 269 (449)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~k~~l~~~~~l~~~~i~~~~~~~~d~l~ig~~~-~~----~~~G 269 (449)
-...+.||.- ..+..|...+. +....+.+++|.||+......+.+.+-.-++++.+-. |. +++.
T Consensus 206 t~v~LGy~~~--------i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~ava 277 (345)
T PF07260_consen 206 TIVCLGYYQS--------IHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVA 277 (345)
T ss_pred HHHHHHHHHH--------HhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhh
Confidence 2233455421 12223333221 1112367999999999999999998888899999854 33 4555
Q ss_pred hHHHHhhhhhH
Q 013102 270 VYGLVDKLGSL 280 (449)
Q Consensus 270 ~Y~~A~~l~~l 280 (449)
+-...|-.+.+
T Consensus 278 vl~~~ypvgh~ 288 (345)
T PF07260_consen 278 VLTATYPVGHM 288 (345)
T ss_pred hhccccCCCcC
Confidence 55555555544
Done!