Query 013102
Match_columns 449
No_of_seqs 152 out of 585
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 04:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013102.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013102hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2jb_ a.7.8.1 (B:) ADP-ribos 9.2 1.7E+02 0.013 16.5 3.4 24 296-319 10-33 (41)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 7.7 3.2E+02 0.023 18.4 7.0 15 91-105 70-84 (100)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 3.6 2.6E+02 0.019 18.6 2.2 15 91-105 61-75 (91)
4 d1nkzb_ f.3.1.1 (B:) Light-har 3.5 4.2E+02 0.03 14.8 2.7 21 310-330 9-29 (41)
5 d1pfva1 a.27.1.1 (A:389-550) M 3.3 5E+02 0.037 18.8 4.0 37 310-346 83-119 (162)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.1 7.1E+02 0.051 16.7 7.5 14 90-103 75-88 (107)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 2.4 8.5E+02 0.062 16.3 4.5 23 128-150 6-28 (158)
8 d1be3k_ f.23.15.1 (K:) Subunit 2.3 3.6E+02 0.026 13.0 1.1 9 411-419 8-16 (26)
9 d2d5ba1 a.27.1.1 (A:349-500) M 2.1 8.5E+02 0.062 17.0 4.0 36 311-346 85-120 (152)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 2.0 5.8E+02 0.042 13.0 3.9 17 405-421 15-31 (33)
No 1
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.25 E-value=1.7e+02 Score=16.51 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHH
Q 013102 296 TFARSASGQYPQKSKKIGNSLAEA 319 (449)
Q Consensus 296 ~fs~~~~~~~~~~~~~l~~~~~~~ 319 (449)
.+.++.+.+++++.+..++..+.+
T Consensus 10 lL~~LLkS~~PeDLqaANrLIK~m 33 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAANKLIKEM 33 (41)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 356677777788887766555443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.68 E-value=3.2e+02 Score=18.36 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013102 91 LLKVAWLTLPLGIFI 105 (449)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (449)
.+.+.|+.++.-+++
T Consensus 70 ~LEiiWTviP~lILi 84 (100)
T d3dtub2 70 PLEIAWTIVPIVILV 84 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 567899877754433
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=2.6e+02 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013102 91 LLKVAWLTLPLGIFI 105 (449)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (449)
.++..|..++.-+++
T Consensus 61 ~lEi~WtiIP~iil~ 75 (91)
T d1fftb2 61 KVEAVVWTVPILIII 75 (91)
T ss_dssp HHHHHTTHHHHHHHH
T ss_pred eehhhHHHHHHHHHH
Confidence 467899766654433
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.51 E-value=4.2e+02 Score=14.76 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013102 310 KKIGNSLAEALKLVLLIGLVF 330 (449)
Q Consensus 310 ~~l~~~~~~~~~~~~~i~~~~ 330 (449)
+++.+....-.|....+++..
T Consensus 9 EElHk~vIdGtRvF~~iA~~A 29 (41)
T d1nkzb_ 9 EELHKYVIDGTRVFLGLALVA 29 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHH
Confidence 334344444556666655443
No 5
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=5e+02 Score=18.75 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHh
Q 013102 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 346 (449)
Q Consensus 310 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~ 346 (449)
++++..+...+...-.++..+-.++|-.|+.+...+.
T Consensus 83 ~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~ 119 (162)
T d1pfva1 83 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 119 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC
Confidence 3455566666666666777777888888888888754
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.08 E-value=7.1e+02 Score=16.66 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 013102 90 KLLKVAWLTLPLGI 103 (449)
Q Consensus 90 ~~~~~~~~~~~~~~ 103 (449)
..++..|+.++.-+
T Consensus 75 ~~lEi~WTviP~lI 88 (107)
T d3ehbb2 75 TPIEVIWTLVPVLI 88 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35789998777433
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.38 E-value=8.5e+02 Score=16.28 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 013102 128 AIFINGFACVLELLAEPLYILSQ 150 (449)
Q Consensus 128 ~l~~~~~~~~i~~l~~p~~~~~q 150 (449)
.+.++++..++.++.-|.+....
T Consensus 6 LlVViaIIgILaaia~P~~~~~~ 28 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYT 28 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777774443
No 8
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.26 E-value=3.6e+02 Score=12.97 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=5.1
Q ss_pred HhhhhHHHH
Q 013102 411 QSAGSVGLI 419 (449)
Q Consensus 411 ~~~G~~G~~ 419 (449)
+.||.+|++
T Consensus 8 qlwgavgav 16 (26)
T d1be3k_ 8 QLWGAVGAV 16 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhcce
Confidence 456666643
No 9
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=2.09 E-value=8.5e+02 Score=17.00 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHh
Q 013102 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 346 (449)
Q Consensus 311 ~l~~~~~~~~~~~~~i~~~~~~~~~~~a~~iv~ll~ 346 (449)
+.+..+...+..+-.++..+-.++|-.++.+...+.
T Consensus 85 ~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg 120 (152)
T d2d5ba1 85 EARAVLYRVVEGLRIASILLTPAMPDKMAELRRALG 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 344555556566656666777777888888888764
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=1.99 E-value=5.8e+02 Score=13.02 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhHHHHHH
Q 013102 405 MNVILIQSAGSVGLILA 421 (449)
Q Consensus 405 l~~~li~~~G~~G~~~a 421 (449)
.-.++..++|......|
T Consensus 15 ~l~ilvfw~gv~avf~a 31 (33)
T d1xmec1 15 TLTILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33344556776654443
Done!