BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013103
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
          Length = 392

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 296 RGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 355
           R G   + ++ G G + G Y     P++   + A R A+E  R  KL     GF   RDV
Sbjct: 131 RAGQPLWAWLGGSGDRIGVYASGINPENPEDVVA-RKAAEGYRAFKLKV---GFDDARDV 186

Query: 356 ANSIDRKEVLG 366
            N++  +E+LG
Sbjct: 187 RNALHVRELLG 197


>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
 pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
          Length = 313

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 128 IIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFA---YRSGDDLRNVCGNPAF--IS 182
           ++++   ++   P + +++Y+     +   D  + F    +    D  +   +P F  +S
Sbjct: 182 VLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLS 241

Query: 183 D-AVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAV 222
           +   ALV  ++ D     GE+  HL  + GV A+  R+  V
Sbjct: 242 NLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGV 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,794,819
Number of Sequences: 62578
Number of extensions: 598468
Number of successful extensions: 1391
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 4
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)