Query 013103
Match_columns 449
No_of_seqs 155 out of 290
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 00:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 8.2E-51 1.8E-55 396.8 22.7 254 126-444 126-388 (389)
2 COG3287 Uncharacterized conser 99.9 5.3E-23 1.1E-27 210.4 17.2 245 124-441 128-379 (379)
3 PF10442 FIST_C: FIST C domain 99.8 1.8E-18 3.8E-23 153.0 10.0 98 287-410 37-135 (136)
4 PF08495 FIST: FIST N domain; 99.5 5.4E-14 1.2E-18 130.3 12.7 99 125-250 97-198 (198)
5 PF08495 FIST: FIST N domain; 65.6 24 0.00052 32.4 7.2 37 125-162 2-39 (198)
6 COG3287 Uncharacterized conser 41.7 50 0.0011 35.1 5.6 44 362-410 29-72 (379)
7 PF12000 Glyco_trans_4_3: Gkyc 34.0 1.7E+02 0.0037 27.7 7.3 66 312-405 32-97 (171)
8 COG1984 DUR1 Allophanate hydro 23.5 4.5E+02 0.0098 27.5 8.8 22 307-328 273-294 (314)
9 PF05662 YadA_stalk: Coiled st 23.2 42 0.00091 21.4 0.8 15 18-32 3-17 (21)
10 COG1348 NifH Nitrogenase subun 19.3 6.9E+02 0.015 25.5 8.8 41 364-410 177-217 (278)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.2e-51 Score=396.83 Aligned_cols=254 Identities=24% Similarity=0.318 Sum_probs=220.1
Q ss_pred cEEEEecCC-CCChhHHHHHhhhhcCCCceeeccc-ccccccccCCCCcceeCCCceecCeEEEEEecCCCCCCCCCCeE
Q 013103 126 VGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDE-RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQ 203 (449)
Q Consensus 126 ~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~-agd~~f~~g~~sr~~~~~~~~~~gaVal~f~~d~~~~~~~G~i~ 203 (449)
...|++.|+ ++....++++|+.++|..+ ++||. +|. +.+.+.|.+...+.+.++.|||.+ .| ++
T Consensus 126 ~~~ilL~dp~t~~~n~li~~l~~~~Pgtt-vvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~L---------~G-i~ 191 (389)
T COG4398 126 DLHLLLPDPYTFPSNLLIEHLNTDLPGTT-VVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVRL---------PG-IR 191 (389)
T ss_pred CceEEccCCcccchHHHhhccCcCCCCce-EEccEeecC---ccCCceEEeecCCcccCceeEEee---------cc-ce
Confidence 355678998 9999999999999999764 55664 443 233344444444588888999999 66 99
Q ss_pred EEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChhHhhhhh-------HhhccCCCcceeEEEEeccc
Q 013103 204 FHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHID-------QLENRFPQVELYVGVTKRRK 276 (449)
Q Consensus 204 ~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~-------e~~~~l~~~~L~iGva~~~~ 276 (449)
..+.|+|||||||.+|.|| ++++|+| .||+++|-|..|. +.+++|.+++|++|+++++.
T Consensus 192 l~~vVsQGCRPIGeP~iVt-----~a~~niI---------tEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~ 257 (389)
T COG4398 192 LVPVVSQGCRPIGEPYIVT-----GADGNII---------TELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEH 257 (389)
T ss_pred ecchhccCcccCCCceEee-----ccCceeE---------eecCCCChHHHHHHHhhccChhhHHHHhcCceEEEEehhh
Confidence 9999999999999999995 9999999 8888888887444 45889999999999999998
Q ss_pred ccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013103 277 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 356 (449)
Q Consensus 277 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~ 356 (449)
+....+++|+||.+++.|+.+|+ |.+++-|++|+++||++||++++..||+-..+.. .+++
T Consensus 258 ~~~~~qGDFlIR~lLG~DPs~Ga----IaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~------------ 318 (389)
T COG4398 258 LAAPGQGDFLIRGLLGADPSTGA----IAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL------------ 318 (389)
T ss_pred hcCCCCCceEeeeccccCCCCCc----eeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC------------
Confidence 87777899999999999999999 9999999999999999999999998777655444 2232
Q ss_pred CccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013103 357 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 436 (449)
Q Consensus 357 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~ 436 (449)
...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+||||| +++ +|+|||||+
T Consensus 319 ----~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------r~~LHG~Ts 380 (389)
T COG4398 319 ----PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------RNALHGFTA 380 (389)
T ss_pred ----CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------hhhhhccce
Confidence 35789999999999999999999999999999999999999999999999 999 999999999
Q ss_pred EEEeeecC
Q 013103 437 AYLVISYS 444 (449)
Q Consensus 437 v~~l~se~ 444 (449)
++++|.++
T Consensus 381 ~~ai~~~~ 388 (389)
T COG4398 381 SMALFVDD 388 (389)
T ss_pred eeEEEeec
Confidence 99999875
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=5.3e-23 Score=210.44 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=187.1
Q ss_pred CCcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCC
Q 013103 124 SPVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTG 200 (449)
Q Consensus 124 ~p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G 200 (449)
.+.-.|.|-|+ +.-.+.+++++..+....+||.||.+|| +.|.++ .++.++.+.++ ||-++| ++
T Consensus 128 r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t----~v~~~g~v~~~aavi~l~---------~t 194 (379)
T COG3287 128 RPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT----YVFDEGEVHEDAAVILLF---------GT 194 (379)
T ss_pred CceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE----EEEEccccccCceEEEEe---------cc
Confidence 34778899999 4446667776777778889999999999 799876 66778888888 555556 99
Q ss_pred CeEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChhHhhhhhHh-h--ccCCC-cceeEEEEeccc
Q 013103 201 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-E--NRFPQ-VELYVGVTKRRK 276 (449)
Q Consensus 201 ~i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~e~-~--~~l~~-~~L~iGva~~~~ 276 (449)
.+.|+++.++||.|.+.+++|| |+++|+| +||||+||.+.+.+. . ++++. ...-.++...+.
T Consensus 195 ~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~vV---------~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~ 260 (379)
T COG3287 195 QLKFGHGFAHGFVPTDKTGVVT-----KADGDVV---------YEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL 260 (379)
T ss_pred eEEeecccccceEEccceEEEE-----eecCcEE---------EEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC
Confidence 9999999999999999999996 8899999 999999999955544 2 34332 222234433331
Q ss_pred ccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013103 277 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 356 (449)
Q Consensus 277 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~ 356 (449)
...+++|.+.++|++++. +.+-..++.|..++++.... ...+++++ ++.+..++
T Consensus 261 -----~~~y~vr~p~~~~e~~~~----~f~~~~i~~~v~lr~~~~~~--~~~~~e~~---~~~a~~~~------------ 314 (379)
T COG3287 261 -----GPLYYVRAPQFVDEEGGL----IFLSAAIPLGVVLRLGETGG--IERVTERA---LRRAFEDL------------ 314 (379)
T ss_pred -----CCcEEEeCcceeccccce----EEeeccCCCccEEEeecCCc--ccHHHHHH---HHHHHhhc------------
Confidence 567999999999988554 55556999999999998655 33222222 22223322
Q ss_pred CccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013103 357 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 436 (449)
Q Consensus 357 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~ 436 (449)
++++.+-|.|+|++| .++-+.+.+.+.+++.+|.=|++|||||||++|. . + -+..||+|.
T Consensus 315 ----~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~~----~-g---------~~~h~Nqtf 374 (379)
T COG3287 315 ----PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGPI----T-G---------ENVHHNQTF 374 (379)
T ss_pred ----cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceeccccccccccc----c-c---------cceeeeeEE
Confidence 334899999999999 6777999999999999996699999999999993 3 5 589999998
Q ss_pred EEEee
Q 013103 437 AYLVI 441 (449)
Q Consensus 437 v~~l~ 441 (449)
+-..|
T Consensus 375 ~~v~f 379 (379)
T COG3287 375 VGVAF 379 (379)
T ss_pred EEEeC
Confidence 76553
No 3
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.76 E-value=1.8e-18 Score=152.99 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=85.6
Q ss_pred EEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeE
Q 013103 287 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG 366 (449)
Q Consensus 287 vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~g 366 (449)
+|.++.+|+.+|+ |+++.+|++|+.||||.+|++.+.++++++++++ . ..+|.+
T Consensus 37 ir~~~~~~~~~gs----l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~~ 90 (136)
T PF10442_consen 37 IRSPLAIDPEDGS----LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPEG 90 (136)
T ss_pred EeeeeEEcCCCCE----EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCceE
Confidence 9999999998999 9999999999999999999999997666544433 1 357999
Q ss_pred EEEEEeCCCCcCCCCCCccchHhHHhhCCC-CceeeeecccccCC
Q 013103 367 GFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR 410 (449)
Q Consensus 367 aLlFSC~GRG~~lfg~~~~E~~~v~e~lp~-vPlaGFy~~GEIgP 410 (449)
+|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus 91 ~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 91 ALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 999999999555544788999999999995 99999999999998
No 4
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.54 E-value=5.4e-14 Score=130.26 Aligned_cols=99 Identities=22% Similarity=0.361 Sum_probs=86.0
Q ss_pred CcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCCC
Q 013103 125 PVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTGE 201 (449)
Q Consensus 125 p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G~ 201 (449)
...+++|.|+ +.+.++++++|.......++|+||.+|+ ..|.++ .++.++.+.++ +|+++| .++
T Consensus 97 ~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~~~~~~~~----~v~~~~~~~~~g~v~~~~---------~~~ 163 (198)
T PF08495_consen 97 SPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGDNLDFERT----YVFANGQVYSDGAVVVAF---------SGS 163 (198)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCCCCcCCce----EEEEeeeeccCcEEEEEE---------cCC
Confidence 4678899998 8889999999988889999999999998 556554 66654455555 999999 679
Q ss_pred eEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCcccccCChh
Q 013103 202 IQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ 250 (449)
Q Consensus 202 i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~p 250 (449)
+++.+.+.|||+|+|.+++|| ++++|+| +|||++|
T Consensus 164 l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I---------~eld~~P 198 (198)
T PF08495_consen 164 LKIDSFVSHGWEPIGKPMTVT-----KAEGNII---------YELDGRP 198 (198)
T ss_pred ceEEEEEecCeEeCCCCEEEE-----EecCCEE---------EEECCcC
Confidence 999999999999999999996 8899999 9999998
No 5
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=65.62 E-value=24 Score=32.35 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=31.4
Q ss_pred CcEEEEecCCCCChhH-HHHHhhhhcCCCceeecccccc
Q 013103 125 PVGIIMFGKEDMDQKP-IIEKLDYAMSMNTVFVGDERSR 162 (449)
Q Consensus 125 p~gii~fgd~~~d~~~-ll~gL~~al~~~~vI~Gg~agd 162 (449)
|..+++|.....+.+. +++.|++.+| +..++|+..+.
T Consensus 2 p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g 39 (198)
T PF08495_consen 2 PDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAG 39 (198)
T ss_pred CEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCc
Confidence 6788999998777777 9999999999 77888887554
No 6
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=41.72 E-value=50 Score=35.14 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=35.0
Q ss_pred CceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 013103 362 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 410 (449)
Q Consensus 362 ~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 410 (449)
.++-.+++|+|--|=. ...=++++++.+|+++++|.=+.|||.|
T Consensus 29 ~~~~~~~ifF~~~~~~-----~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 29 DRSDFVLIFFSPERDE-----HVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCCeEEEEecccccc-----HHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 4577899888865532 1134689999999999999999999997
No 7
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=33.97 E-value=1.7e+02 Score=27.68 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchHhHH
Q 013103 312 TGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFF 391 (449)
Q Consensus 312 ~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~ 391 (449)
+......+.++.+++..--+.++..+++|+++ +..|- +++.=.|=|+.|| ++
T Consensus 32 ~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-----------------Gf~PD--vI~~H~GWGe~Lf---------lk 83 (171)
T PF12000_consen 32 PTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-----------------GFVPD--VIIAHPGWGETLF---------LK 83 (171)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-----------------CCCCC--EEEEcCCcchhhh---------HH
Confidence 34555667888888775444445555555532 33443 5666677786665 89
Q ss_pred hhCCCCceeeeecc
Q 013103 392 ENFPSAPLAGIFCG 405 (449)
Q Consensus 392 e~lp~vPlaGFy~~ 405 (449)
+.||++|+++++=+
T Consensus 84 dv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 84 DVFPDAPLIGYFEF 97 (171)
T ss_pred HhCCCCcEEEEEEE
Confidence 99999999997643
No 8
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=23.47 E-value=4.5e+02 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.2
Q ss_pred ccCCCCCCEEEEEcCCHHHHHH
Q 013103 307 GVGIKTGDYFQFYQPDHNAALA 328 (449)
Q Consensus 307 g~~I~~G~~vqf~~RD~~aA~~ 328 (449)
.+.+++|++|+|..-+.++|++
T Consensus 273 lAQ~~pG~~vrF~~~~~~ea~~ 294 (314)
T COG1984 273 LAQIRPGSKVRFVPISLEEALA 294 (314)
T ss_pred HhccCCCCeEEEEECCHHHHHH
Confidence 4467999999999999999884
No 9
>PF05662 YadA_stalk: Coiled stalk of trimeric autotransporter adhesin; InterPro: IPR008635 This short motif is found in invasins and haemagglutinins, normally associated with the Hep_Hag repeat (IPR008640 from INTERPRO).; GO: 0009405 pathogenesis, 0019867 outer membrane; PDB: 3NTN_A 3PR7_A 1P9H_A 3D9X_A 3LAA_A 3LA9_A 3EMO_C.
Probab=23.22 E-value=42 Score=21.39 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.9
Q ss_pred EEEeecccccccccc
Q 013103 18 ILSVVHGVMGRDALT 32 (449)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (449)
|++|+.|.-..|||+
T Consensus 3 ItnVa~G~~~tDAVN 17 (21)
T PF05662_consen 3 ITNVADGTNDTDAVN 17 (21)
T ss_dssp EESE---TTTTSB-B
T ss_pred ceeecCCCCCcccee
Confidence 899999999999986
No 10
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=19.28 E-value=6.9e+02 Score=25.54 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=26.6
Q ss_pred eeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 013103 364 VLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 410 (449)
Q Consensus 364 p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 410 (449)
..++++ |+.|+.. ...+=++.|.+.+ +.|+++|-=.-+|-.
T Consensus 177 rLgGiI--cNsr~~~---~e~e~v~~fa~~i-gt~li~~vPr~~ivq 217 (278)
T COG1348 177 RLGGII--CNSRSVD---RERELVEAFAERL-GTQLIHFVPRDNIVQ 217 (278)
T ss_pred ceeeEE--ecCCCcc---cHHHHHHHHHHHh-CCceEeeccchHHHH
Confidence 467776 6777722 3344466777777 788998876665543
Done!