Query 013103
Match_columns 449
No_of_seqs 155 out of 290
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 8.9 1.7E+02 0.006 25.3 2.6 30 127-158 112-141 (165)
2 2fcj_A Small toprim domain pro 7.8 1.9E+02 0.0065 24.6 2.2 29 124-152 49-77 (119)
3 2zjd_A Microtubule-associated 5.5 2E+02 0.0067 24.9 1.1 20 4-23 25-44 (130)
4 1eo6_A GATE-16, golgi-associat 5.3 2.1E+02 0.007 24.1 1.1 20 4-23 18-37 (117)
5 3m95_A Autophagy related prote 4.8 2.3E+02 0.0079 24.3 1.1 19 4-22 26-44 (125)
6 1jgn_B PAIP2, polyadenylate-bi 4.8 2.2E+02 0.0074 17.9 0.6 11 67-77 13-23 (26)
7 3hgl_A Effector protein hopab2 4.7 1.1E+02 0.0038 24.6 -0.9 26 384-409 43-68 (85)
8 3tjy_A Effector protein hopab3 4.7 1.1E+02 0.0039 24.9 -0.9 28 383-410 40-67 (94)
9 2r2q_A Gamma-aminobutyric acid 4.6 2.4E+02 0.0083 23.3 1.1 20 4-23 17-36 (110)
10 4h3d_A 3-dehydroquinate dehydr 4.4 3.8E+02 0.013 25.2 2.4 43 391-447 196-238 (258)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=8.87 E-value=1.7e+02 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.4
Q ss_pred EEEEecCCCCChhHHHHHhhhhcCCCceeecc
Q 013103 127 GIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGD 158 (449)
Q Consensus 127 gii~fgd~~~d~~~ll~gL~~al~~~~vI~Gg 158 (449)
-||+-||+ |..|+++.|++.++..+.++|-
T Consensus 112 ~vLvSgD~--DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 112 VILVSGDG--DFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp EEEECCCG--GGHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEEECCh--hHHHHHHHHHHHcCcEEEEEeC
Confidence 34444444 7999999999878888877773
No 2
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=7.77 E-value=1.9e+02 Score=24.57 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=26.0
Q ss_pred CCcEEEEecCCCCChhHHHHHhhhhcCCC
Q 013103 124 SPVGIIMFGKEDMDQKPIIEKLDYAMSMN 152 (449)
Q Consensus 124 ~p~gii~fgd~~~d~~~ll~gL~~al~~~ 152 (449)
.-++||+|-|+...|+.+-+.|...+|..
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~lp~~ 77 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMFPEA 77 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHCTTS
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHCCCC
Confidence 35899999999999999999999999864
No 3
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=5.49 E-value=2e+02 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.5
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013103 4 KMQLVKHLGLRTPIILSVVH 23 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (449)
-..|.+|...+|||||=-+.
T Consensus 25 ~~~ir~kyP~kIPVIvEk~~ 44 (130)
T 2zjd_A 25 VRLIREQHPTKIPVIIERYK 44 (130)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHhCCCceEEEEEEcC
Confidence 35688999999999985443
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=5.31 E-value=2.1e+02 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.6
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013103 4 KMQLVKHLGLRTPIILSVVH 23 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (449)
-..|.+|...+|||||=-+.
T Consensus 18 ~~~ir~kyP~~IPVIve~~~ 37 (117)
T 1eo6_A 18 SAKIRAKYPDRVPVIVEKVS 37 (117)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHHCCCeEEEEEEecC
Confidence 34678899999999986554
No 5
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=4.84 E-value=2.3e+02 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=15.0
Q ss_pred hhhHHHhhCCCCcEEEEee
Q 013103 4 KMQLVKHLGLRTPIILSVV 22 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (449)
-..|.+|.--+|||||--+
T Consensus 26 ~~~ir~kyP~rIPVIvEr~ 44 (125)
T 3m95_A 26 GEKIRRKYPDRVPVIVEKA 44 (125)
T ss_dssp HHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEec
Confidence 3568889999999998543
No 6
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=4.78 E-value=2.2e+02 Score=17.90 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=8.5
Q ss_pred ccCCcccccee
Q 013103 67 YLPGLKVDAIP 77 (449)
Q Consensus 67 ~~pg~~~~~~~ 77 (449)
|.||.|-..|.
T Consensus 13 f~pgvkygni~ 23 (26)
T 1jgn_B 13 FVPGVKYGNIX 23 (26)
T ss_dssp CCTTSCTTCC-
T ss_pred cCCCceeccee
Confidence 78999988764
No 7
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=4.72 E-value=1.1e+02 Score=24.64 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.4
Q ss_pred ccchHhHHhhCCCCceeeeecccccC
Q 013103 384 NVDSFPFFENFPSAPLAGIFCGGEIG 409 (449)
Q Consensus 384 ~~E~~~v~e~lp~vPlaGFy~~GEIg 409 (449)
-+|-..+++.||+++..|+-..-|++
T Consensus 43 r~e~~il~qHFPnm~~~Gi~~~S~LA 68 (85)
T 3hgl_A 43 RVEQNIFRQHFPNMPMHGISRDSELA 68 (85)
T ss_dssp HHHHHHHHHHCTTHHHHCCCTTCHHH
T ss_pred HHHHHHHHHHChhhhhccCCCCCHHH
Confidence 45889999999999999988877765
No 8
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=4.66 E-value=1.1e+02 Score=24.92 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.7
Q ss_pred CccchHhHHhhCCCCceeeeecccccCC
Q 013103 383 LNVDSFPFFENFPSAPLAGIFCGGEIGR 410 (449)
Q Consensus 383 ~~~E~~~v~e~lp~vPlaGFy~~GEIgP 410 (449)
.-+|...+++.||+++..|+-..-|++-
T Consensus 40 sr~eq~Il~qHFPnM~~~gI~~~seLA~ 67 (94)
T 3tjy_A 40 SRAEQNVFLQHFPDMLPCGIDRNSELAI 67 (94)
T ss_dssp CHHHHHHHHHHCTTHHHHCCCTTSHHHH
T ss_pred hHHHHHHHHHHCcccccccCCCccHHHH
Confidence 3468999999999999999988888763
No 9
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=4.64 E-value=2.4e+02 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.5
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013103 4 KMQLVKHLGLRTPIILSVVH 23 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (449)
-..|.+|...+|||||--+.
T Consensus 17 ~~~ir~k~p~~IPVive~~~ 36 (110)
T 2r2q_A 17 GEKIRKKYPDRVPVIVEKAP 36 (110)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHhCCCceEEEEEecC
Confidence 34678889999999986554
No 10
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=4.40 E-value=3.8e+02 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=24.8
Q ss_pred HhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccceEEEeeecCCCC
Q 013103 391 FENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAP 447 (449)
Q Consensus 391 ~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~v~~l~se~p~~ 447 (449)
++..++.|+++ +|.||.|.. ++. .+.+.|-..+++.+.+..+|
T Consensus 196 ~~~~~~~P~I~-~~MG~~G~~-SRi------------~~~~fGS~lTf~~~~~~sAP 238 (258)
T 4h3d_A 196 FKIYADRPIIT-MSMSGMGVI-SRL------------CGEIFGSALTFGAAKSVSAP 238 (258)
T ss_dssp HHHTCSSCBEE-EECTGGGGG-GGT------------CHHHHCBCEEECBCC---CT
T ss_pred HHhcCCCCEEE-EeCCCCChH-HHH------------HHHHhCCceEeccCCCCCCC
Confidence 34467899997 899999981 111 23344455666666554444
Done!