Query 013103
Match_columns 449
No_of_seqs 155 out of 290
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 04:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ttza_ c.47.1.1 (A:) Hypothet 12.5 45 0.0033 24.0 1.9 16 4-19 36-51 (75)
2 d1icpa_ c.1.4.1 (A:) 12-oxophy 11.3 64 0.0046 29.7 3.1 12 72-83 1-12 (364)
3 d1ybha1 c.31.1.3 (A:281-459) A 10.7 58 0.0042 26.6 2.3 58 5-70 38-95 (179)
4 d1uf3a_ d.159.1.6 (A:) Hypothe 10.5 98 0.0072 24.4 3.8 36 124-159 4-42 (228)
5 d2ez9a1 c.31.1.3 (A:183-365) P 7.6 1.1E+02 0.0081 24.9 2.9 55 5-67 49-103 (183)
6 d1ozha1 c.31.1.3 (A:188-366) C 6.8 1.3E+02 0.0092 24.3 2.8 16 136-151 135-150 (179)
7 d3d32a1 d.15.1.3 (A:1-118) GAB 6.5 75 0.0054 25.0 1.1 19 4-22 20-38 (118)
8 d1kfia4 d.129.2.1 (A:444-572) 6.1 3E+02 0.022 21.8 4.7 34 310-343 77-119 (129)
9 d1ci3m1 b.2.6.1 (M:1-169,M:232 5.7 1.2E+02 0.0089 25.4 2.0 44 27-82 85-135 (187)
10 d2djia1 c.31.1.3 (A:187-363) P 5.5 1.4E+02 0.011 23.8 2.4 55 5-67 40-94 (177)
No 1
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=12.46 E-value=45 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.8
Q ss_pred hhhHHHhhCCCCcEEE
Q 013103 4 KMQLVKHLGLRTPIIL 19 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (449)
...|.+|+|-+||||.
T Consensus 36 d~~l~~~y~~~IPVl~ 51 (75)
T d1ttza_ 36 DAALESAYGLRVPVLR 51 (75)
T ss_dssp CHHHHHHHTTTCSEEE
T ss_pred CHHHHHHhCCeeeEEE
Confidence 4578899999999997
No 2
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=11.32 E-value=64 Score=29.66 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=11.4
Q ss_pred cccceecccccc
Q 013103 72 KVDAIPLLRRKE 83 (449)
Q Consensus 72 ~~~~~~~~~~~~ 83 (449)
|||.||||.|-+
T Consensus 1 ~~~~~pLFsP~~ 12 (364)
T d1icpa_ 1 QVDKIPLMSPCK 12 (364)
T ss_dssp CCCCCGGGSCEE
T ss_pred CCCCCCCCCCce
Confidence 799999999999
No 3
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=10.67 E-value=58 Score=26.55 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred hhHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEeccCC
Q 013103 5 MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPG 70 (449)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~pg 70 (449)
..|++++| +||++|. +|++.+.+.|.-.. +..+...++..+.+-++.=+||++|.--+
T Consensus 38 ~~lae~~~--~Pv~tt~----~~~g~~~~~h~~~~--G~~G~~g~~~~~~~~~~aDlil~lG~~l~ 95 (179)
T d1ybha1 38 GRFVELTG--IPVASTL----MGLGSYPCDDELSL--HMLGMHGTVYANYAVEHSDLLLAFGVRFD 95 (179)
T ss_dssp HHHHHHHC--CCEEECT----TTTTSSCTTSTTEE--EECSTTSCHHHHHHHHHCSEEEEESCCCC
T ss_pred HHHHhhhc--ccceecc----cccCCCcccccccc--ccCCCcCCHHHHHHHHhhhhhhhcccccc
Confidence 46788887 6888764 67888877776544 11111112123334445678999997544
No 4
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=10.51 E-value=98 Score=24.41 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCChhHH---HHHhhhhcCCCceeeccc
Q 013103 124 SPVGIIMFGKEDMDQKPI---IEKLDYAMSMNTVFVGDE 159 (449)
Q Consensus 124 ~p~gii~fgd~~~d~~~l---l~gL~~al~~~~vI~Gg~ 159 (449)
.++.|+++||-+.|.+.| ++..+..=+.-++++|++
T Consensus 4 ~~~~i~~~sd~hg~~eale~~~~~~~~~~~D~vv~~GDl 42 (228)
T d1uf3a_ 4 TVRYILATSNPMGDLEALEKFVKLAPDTGADAIALIGNL 42 (228)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCS
T ss_pred cccEEEEEeCCCCCHHHHHHHHHHHhhcCCCEEEECCCC
Confidence 467888888887775543 333333323345677776
No 5
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=7.57 E-value=1.1e+02 Score=24.94 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred hhHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEec
Q 013103 5 MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGY 67 (449)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 67 (449)
..|++++| +||++| .+|++.+.+.+.-.+ +.-+...++..+.+=.+.-++|.+|.
T Consensus 49 ~~lae~~~--~Pv~tt----~~~~g~~~~~hp~~~--G~~G~~~~~~~~~~i~~aDlil~vG~ 103 (183)
T d2ez9a1 49 EQLSKTLK--IPLMST----YPAKGIVADRYPAYL--GSANRVAQKPANEALAQADVVLFVGN 103 (183)
T ss_dssp HHHHHHHT--CCEEEC----GGGTTSSCTTCTTBC--CCCSSSSCHHHHHHHHHCSEEEEESC
T ss_pred HHHhhccc--eEEEee----ccccccccccCcccc--ccccccccHHHHhhhhccCceEEeec
Confidence 56778886 676654 467788877766433 11111111112222224568999985
No 6
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.76 E-value=1.3e+02 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=11.5
Q ss_pred CChhHHHHHhhhhcCC
Q 013103 136 MDQKPIIEKLDYAMSM 151 (449)
Q Consensus 136 ~d~~~ll~gL~~al~~ 151 (449)
.|.+..++.|..++..
T Consensus 135 gD~~~~l~~L~~~l~~ 150 (179)
T d1ozha1 135 GDIAGTLNKLAQNIDH 150 (179)
T ss_dssp SCHHHHHHHHHHTCCS
T ss_pred eCHHHHHHHHHHhhhc
Confidence 4667788888777654
No 7
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=75 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred hhhHHHhhCCCCcEEEEee
Q 013103 4 KMQLVKHLGLRTPIILSVV 22 (449)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (449)
-..+.+|..-|+||||--+
T Consensus 20 s~~i~~KyPdriPVIve~~ 38 (118)
T d3d32a1 20 GEKIRKKYPDRVPVIVEKA 38 (118)
T ss_dssp HHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHHCCCCceEEEEEc
Confidence 3568899999999998654
No 8
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=6.10 E-value=3e+02 Score=21.83 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCCCEEEEEc---------CCHHHHHHHHHHHHHHHHHHhhh
Q 013103 310 IKTGDYFQFYQ---------PDHNAALAACRNASENIRNLKLN 343 (449)
Q Consensus 310 I~~G~~vqf~~---------RD~~aA~~dl~~~a~~lr~l~~~ 343 (449)
=-.|+++++|. -|++.|.+++.+++.++.++.+.
T Consensus 77 Gs~GATiRlY~E~ye~d~~~~~~q~aL~~li~~al~~s~i~~~ 119 (129)
T d1kfia4 77 GSVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISDIAQF 119 (129)
T ss_dssp CSSSEEEEEEEEEEESSCCCSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCcEEEEEeeecCCCcccCCHHHHHHHHHHHHHHHHhHHHH
Confidence 37888888875 37888999999888887666553
No 9
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=5.71 E-value=1.2e+02 Score=25.44 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=29.2
Q ss_pred ccccccchhhhee-----eccccCCCCcccccccCCccceEEEEeccCCccccce--eccccc
Q 013103 27 GRDALTDEFREVK-----FQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAI--PLLRRK 82 (449)
Q Consensus 27 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~pg~~~~~~--~~~~~~ 82 (449)
=.|-+++|.||.. |+.|..+.. =+|.||=+||-|-..| |+|.|-
T Consensus 85 P~dri~~e~kek~~~~~~fqpYs~~~~------------NIlvvGPvpG~~~~EivfPiLsPd 135 (187)
T d1ci3m1 85 PEDRIPEEMKEEVGPSYLFQPYADDKQ------------NIVLVGPLPGDEYEEIVFPVLSPN 135 (187)
T ss_dssp CGGGSCHHHHTTSCCGGGCEESSTTCT------------TEEEEEEEETTTCSSEEEEEECCC
T ss_pred CcccCCHHHHHHhcCceeeeecCCCCC------------CEEEEcCCCCccccEEEEeecCCC
Confidence 4678899999875 333333221 1688999999998754 555543
No 10
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=5.49 E-value=1.4e+02 Score=23.80 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=28.9
Q ss_pred hhHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEec
Q 013103 5 MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGY 67 (449)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 67 (449)
..|++++| +||++| .+|++.+.+.+.=.. +.-+...++..+.+=++.=+||.+|.
T Consensus 40 ~~lae~l~--~Pv~~t----~~~~g~ip~~hp~~~--G~~g~~~~~~~~~~l~~aDlvi~lG~ 94 (177)
T d2djia1 40 QELARKIK--APVITT----GKNFETFEWDFEALT--GSTYRVGWKPANETILEADTVLFAGS 94 (177)
T ss_dssp HHHHHHHT--CCEEEC----TTCGGGSCTTCTTBC--CCSSSSSCHHHHHHHHHCSEEEEESC
T ss_pred HHhhhccc--eEEEec----ccccccccccccccc--cccccccChhhhhhhhccCceEEeec
Confidence 35677775 476654 467888877665222 11111111112222224568999986
Done!