Query 013104
Match_columns 449
No_of_seqs 197 out of 1412
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 00:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 4E-119 9E-124 936.1 36.1 376 74-449 1-377 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 3E-113 7E-118 903.6 32.9 339 108-449 5-347 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 6E-112 1E-116 874.6 32.5 341 107-449 3-343 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 3E-110 6E-115 856.7 29.3 324 111-449 1-324 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 1E-109 3E-114 847.9 32.5 333 107-449 2-335 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 7E-107 1E-111 828.5 32.9 331 107-449 2-332 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 3E-103 7E-108 791.3 29.5 304 107-449 2-305 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 1.6E-87 3.6E-92 686.8 26.7 292 107-449 16-309 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 4.7E-77 1E-81 559.5 21.8 201 107-310 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 1.7E-74 3.8E-79 551.5 22.3 201 108-310 14-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 7.2E-74 1.6E-78 545.9 22.7 201 107-309 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 2.9E-72 6.3E-77 538.7 22.5 201 109-311 19-219 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 7.8E-72 1.7E-76 528.1 21.3 197 108-306 2-199 (199)
14 PF00926 DHBP_synthase: 3,4-di 100.0 5.9E-72 1.3E-76 527.5 17.1 194 111-306 1-194 (194)
15 KOG1284 Bifunctional GTP cyclo 100.0 3.7E-72 8E-77 557.0 15.7 333 67-399 21-357 (357)
16 PRK03353 ribB 3,4-dihydroxy-2- 100.0 6.5E-68 1.4E-72 507.9 22.5 202 107-310 12-213 (217)
17 PRK05773 3,4-dihydroxy-2-butan 100.0 6.2E-67 1.3E-71 500.5 21.1 193 110-306 2-217 (219)
18 COG0807 RibA GTP cyclohydrolas 100.0 1.1E-46 2.3E-51 354.7 10.4 136 312-449 2-137 (193)
19 PF00925 GTP_cyclohydro2: GTP 100.0 4.1E-44 8.8E-49 331.5 7.7 136 313-449 1-136 (169)
20 PRK00393 ribA GTP cyclohydrola 100.0 1.3E-39 2.9E-44 308.3 10.3 137 312-449 2-138 (197)
21 TIGR00505 ribA GTP cyclohydrol 100.0 2.2E-39 4.7E-44 305.5 10.7 135 314-449 1-135 (191)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 3.2E-37 7E-42 290.9 10.2 137 312-449 1-137 (193)
23 PRK07198 hypothetical protein; 99.9 3.7E-28 8.1E-33 247.8 9.8 150 284-449 176-342 (418)
24 KOG1284 Bifunctional GTP cyclo 99.2 1.2E-11 2.5E-16 125.0 3.8 95 352-448 155-253 (357)
25 KOG3009 Predicted carbohydrate 67.3 20 0.00042 39.4 7.6 158 112-299 30-203 (614)
26 TIGR02361 dak_ATP dihydroxyace 57.6 15 0.00033 41.0 5.0 71 331-405 33-108 (574)
27 PRK14481 dihydroxyacetone kina 57.1 18 0.00039 37.8 5.1 70 331-405 35-109 (331)
28 PF06794 UPF0270: Uncharacteri 54.0 16 0.00034 30.0 3.3 22 109-130 37-58 (70)
29 PRK11468 dihydroxyacetone kina 53.0 25 0.00055 37.1 5.4 71 331-405 34-109 (356)
30 PRK04966 hypothetical protein; 52.8 15 0.00033 30.3 3.0 22 109-130 37-58 (72)
31 TIGR02362 dhaK1b probable dihy 46.9 30 0.00066 36.1 4.9 70 331-405 32-106 (326)
32 PF02733 Dak1: Dak1 domain; I 45.5 12 0.00026 39.0 1.7 68 332-404 20-92 (325)
33 TIGR02363 dhaK1 dihydroxyaceto 45.4 31 0.00068 36.1 4.7 71 331-405 35-110 (329)
34 PRK14479 dihydroxyacetone kina 40.9 38 0.00081 37.9 4.8 70 331-405 34-108 (568)
35 PRK08296 hypothetical protein; 40.4 31 0.00067 38.9 4.0 82 120-202 511-598 (603)
36 COG1560 HtrB Lauroyl/myristoyl 40.2 78 0.0017 32.7 6.6 92 109-220 182-276 (308)
37 PRK00304 hypothetical protein; 38.3 51 0.0011 27.5 4.0 22 109-130 36-57 (75)
38 PF00391 PEP-utilizers: PEP-ut 38.1 22 0.00047 29.0 1.8 65 135-199 9-78 (80)
39 PRK14483 DhaKLM operon coactiv 38.0 49 0.0011 34.6 4.8 70 331-405 34-108 (329)
40 PF13263 PHP_C: PHP-associated 36.9 21 0.00045 27.3 1.4 20 283-302 5-24 (56)
41 PTZ00375 dihydroxyacetone kina 31.4 65 0.0014 36.3 4.7 70 331-405 37-111 (584)
42 PF04472 DUF552: Protein of un 29.8 55 0.0012 26.3 2.9 21 106-126 7-27 (73)
43 COG0223 Fmt Methionyl-tRNA for 29.5 1.3E+02 0.0027 31.4 6.1 128 253-388 13-172 (307)
44 COG1926 Predicted phosphoribos 27.1 1.3E+02 0.0029 29.8 5.5 49 120-168 123-185 (220)
45 PRK06354 pyruvate kinase; Prov 27.0 1.3E+02 0.0029 33.9 6.2 82 120-202 494-581 (590)
46 COG3089 Uncharacterized protei 25.3 69 0.0015 26.3 2.6 21 109-129 37-57 (72)
47 cd03109 DTBS Dethiobiotin synt 25.0 1.4E+02 0.0031 26.3 5.0 50 248-298 82-131 (134)
48 PLN02880 tyrosine decarboxylas 24.8 1.3E+02 0.0028 32.8 5.5 50 247-296 222-272 (490)
49 PF07905 PucR: Purine cataboli 24.4 1.5E+02 0.0031 26.0 4.8 78 224-307 35-113 (123)
50 PLN02398 hydroxyacylglutathion 23.3 6.4E+02 0.014 26.3 10.0 138 247-404 104-246 (329)
51 PF05198 IF3_N: Translation in 22.2 72 0.0016 26.3 2.3 32 269-300 14-48 (76)
52 PRK14041 oxaloacetate decarbox 21.5 2.8E+02 0.0061 30.4 7.2 203 203-428 19-227 (467)
53 PRK08558 adenine phosphoribosy 20.5 1.7E+02 0.0038 28.9 5.0 49 246-300 186-235 (238)
54 PF03437 BtpA: BtpA family; I 20.4 2.2E+02 0.0047 28.8 5.7 101 133-275 49-150 (254)
55 TIGR01822 2am3keto_CoA 2-amino 20.4 1.8E+02 0.0039 29.5 5.3 35 264-298 170-205 (393)
56 PLN02590 probable tyrosine dec 20.2 1.9E+02 0.0041 32.2 5.7 50 247-296 270-320 (539)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=4.4e-119 Score=936.12 Aligned_cols=376 Identities=82% Similarity=1.266 Sum_probs=366.8
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHH
Q 013104 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI 153 (449)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm 153 (449)
|+.+|||+++|++|++++||.++.+.+++.+.+.|++|++||++||+|+||||+||++||||||||+|||++||+.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 47899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEeecChhhHhhcCCCcccccCCCCccccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCC
Q 013104 154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH 233 (449)
Q Consensus 154 ~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGH 233 (449)
++|++|+||++|++++|++|+||+|+....|.+.++++||||||+++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999999865577777899999999999999999999999999999999999999999999
Q ss_pred ccccccccCccccccChhHHHHHHHHHcCCCccEEEEEEeCC-CCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhh
Q 013104 234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312 (449)
Q Consensus 234 VfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~eiv~~-dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~l 312 (449)
||||++++|||++|+|||||||||||||||.|++|||||+++ ||+||+.+++.+||++|+||+|+|+|||+||++++++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred hhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 013104 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392 (449)
Q Consensus 313 V~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G 392 (449)
|+++++.++||.||.|++++|++..++.||+||++|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G 320 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG 320 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 393 ~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
+|||||||+||||||||.+|+++|.+|++|+||++||.++|++.|.|+||+|||||+
T Consensus 321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~ 377 (450)
T PLN02831 321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILR 377 (450)
T ss_pred CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999995
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.1e-113 Score=903.58 Aligned_cols=339 Identities=59% Similarity=0.974 Sum_probs=331.4
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCcc
Q 013104 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (449)
Q Consensus 108 ~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~ 187 (449)
|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||++|++++|++|+||+|+.. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999986 7777
Q ss_pred ccCceEEEeecC--CCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCc
Q 013104 188 LCTAFTVSVDAK--YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (449)
Q Consensus 188 ~~taftvsVDa~--~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~P 265 (449)
+.++|||||||+ .|++|||||.|||+|||+||+|.++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 889999999986 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEE
Q 013104 266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM 345 (449)
Q Consensus 266 aaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlAL 345 (449)
++|||||+++||+||+++++.+||++|+||+|+|+|||+||+++|++|++++++++||.||.|++++|++..++.||+||
T Consensus 163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL 242 (555)
T PRK09319 163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242 (555)
T ss_pred eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCC--CCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCC
Q 013104 346 VKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGH 423 (449)
Q Consensus 346 v~G~i~~--~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~ 423 (449)
++|++.. ++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||| ||||||||.+|+++|.|||+|+
T Consensus 243 vkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~ 321 (555)
T PRK09319 243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGL 321 (555)
T ss_pred EcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCC
Confidence 9999963 579999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CchhhhhhcCCCCCccchhhhhhccC
Q 013104 424 DTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 424 DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
||++||..+||+.|.|+||+|||||+
T Consensus 322 DTveAn~~lG~~~D~RdYgigAQIL~ 347 (555)
T PRK09319 322 DTVEANERLGFPADLRNYGVGAQILN 347 (555)
T ss_pred ChhhhhhhcCCcccceehhHHHHHHH
Confidence 99999999999999999999999995
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=6.2e-112 Score=874.55 Aligned_cols=341 Identities=64% Similarity=1.052 Sum_probs=334.5
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|+||++|++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999876 777
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++++||||||++.|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 78899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEE
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv 346 (449)
+|+|||+++||+||+.+++.+||++|+||+|+++|||+||+++|.+|+++.+.++||.||.|++++|++..++.||+||+
T Consensus 161 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv 240 (402)
T PRK09311 161 GVICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240 (402)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 013104 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (449)
Q Consensus 347 ~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTv 426 (449)
+|++.+++|+||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||++|||||+|+.+|+++|.+|++|+||+
T Consensus 241 ~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~ 320 (402)
T PRK09311 241 KGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTV 320 (402)
T ss_pred eCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChh
Confidence 99998889999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhhhhcCCCCCccchhhhhhccC
Q 013104 427 EANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 427 eAn~~lg~~~D~RdYgigAQIL~ 449 (449)
+||.++|++.|.|+||+|||||+
T Consensus 321 ~an~~lg~~~D~Rdyg~gaqIL~ 343 (402)
T PRK09311 321 DANLKLGFPADARDYGIGAQILV 343 (402)
T ss_pred hhhhhcCCCccceehhHHHHHHH
Confidence 99999999999999999999995
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2.6e-110 Score=856.72 Aligned_cols=324 Identities=41% Similarity=0.669 Sum_probs=311.8
Q ss_pred HHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCccccC
Q 013104 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (449)
Q Consensus 111 i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~t 190 (449)
+++||++||+|+||||+|+ +||||||||+||+++||+.||||++|++|+||+||++++|++|+||+|+. |. .++
T Consensus 1 ~~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~ 74 (387)
T PRK09318 1 MEELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GET 74 (387)
T ss_pred CHHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCC
Confidence 4789999999999999997 89999999999999999999999999999999999999999999999984 32 458
Q ss_pred ceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCccEEEE
Q 013104 191 AFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 270 (449)
Q Consensus 191 aftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~ 270 (449)
+|||||||+ .+|||||.|||+|||+||+ .++|+||+||||||||.+. ||++|+||||||||||||||+.|++|||
T Consensus 75 aftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vic 149 (387)
T PRK09318 75 NFFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIV 149 (387)
T ss_pred CEEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEE
Confidence 999999995 3499999999999999999 6789999999999999775 7899999999999999999999999999
Q ss_pred EEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEEeccc
Q 013104 271 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEI 350 (449)
Q Consensus 271 eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i 350 (449)
|||++||+||+++++++||++|+||+|+|+|||+||.++|++|+++++.++||+||.|++++|++..++.||+||++|++
T Consensus 150 ei~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~ 229 (387)
T PRK09318 150 EILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPL 229 (387)
T ss_pred EEecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhh
Q 013104 351 GDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANE 430 (449)
Q Consensus 351 ~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~ 430 (449)
. ++|||||||+|+|||+|||.+|||++||+.||++|+++| ||||||| |||||+|+.+|+++|.+|++|+||++||.
T Consensus 230 ~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn~ 305 (387)
T PRK09318 230 G--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANR 305 (387)
T ss_pred C--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhhh
Confidence 4 489999999999999999999999999999999999999 9999998 99999999999999999999999999999
Q ss_pred hcCCCCCccchhhhhhccC
Q 013104 431 ELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 431 ~lg~~~D~RdYgigAQIL~ 449 (449)
++|++.|.|+||+|||||+
T Consensus 306 ~lg~~~D~RdygigAqIL~ 324 (387)
T PRK09318 306 ALGFKEDERDYAAAFQILK 324 (387)
T ss_pred hcCCCccceeeeHHHHHHH
Confidence 9999999999999999995
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.2e-109 Score=847.93 Aligned_cols=333 Identities=43% Similarity=0.671 Sum_probs=317.9
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999976 788
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++++|||||||+.|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 88899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEE
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv 346 (449)
+|+||||++||+||+++++.+||++|+||+|+|+|||+||+++|.+|+++++++|||.||.|++++|++..++.||+||+
T Consensus 160 avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv 239 (369)
T PRK12485 160 SVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMV 239 (369)
T ss_pred EEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceeEEEccCCccccccCCCCC-CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCc
Q 013104 347 KGEIGDGQDILVRVHSECLTGDIFGSARC-DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDT 425 (449)
Q Consensus 347 ~G~i~~~~~vLVRVHSeCltgDvfgs~~C-DCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DT 425 (449)
+|++.+++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+|+ +++||.+|+++|..++++++.
T Consensus 240 ~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~~ 318 (369)
T PRK12485 240 MGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQR 318 (369)
T ss_pred eCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCCc
Confidence 99998889999999999999999999875 9999999999999999999999999555 569999999999877767664
Q ss_pred hhhhhhcCCCCCccchhhhhhccC
Q 013104 426 VEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 426 veAn~~lg~~~D~RdYgigAQIL~ 449 (449)
.+ ..|+|+||+|||||+
T Consensus 319 ~d-------~r~~r~ygigAqILr 335 (369)
T PRK12485 319 SQ-------SRIYSEVGTGAQILQ 335 (369)
T ss_pred cc-------chhhhhhhHHHHHHH
Confidence 21 346779999999995
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=6.6e-107 Score=828.49 Aligned_cols=331 Identities=50% Similarity=0.771 Sum_probs=322.2
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.|++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|+||++|++++|++|+||+|+.. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999875 777
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++++||||||+++|++|||||.||++||+.|++++++|+||++|||||||++++||++.|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 78899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEE
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv 346 (449)
+|+|||+++||+||+.+++++||++|+||+|+++||++||++++++|++++++++||+||+|++++|++..++.||+||+
T Consensus 160 avi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv 239 (367)
T PRK14019 160 AVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALV 239 (367)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 013104 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (449)
Q Consensus 347 ~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTv 426 (449)
+|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||| ||||||||.+|+++ |+
T Consensus 240 ~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~ 309 (367)
T PRK14019 240 KGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EE 309 (367)
T ss_pred eCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hh
Confidence 999988889999999999999999999999999999999999999999999998 89999999999986 35
Q ss_pred hhhhhcCCCCCccchhhhhhccC
Q 013104 427 EANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 427 eAn~~lg~~~D~RdYgigAQIL~ 449 (449)
+||.++|++.|+|+||+|||||+
T Consensus 310 ~an~~lg~~~d~R~y~igaqIL~ 332 (367)
T PRK14019 310 AAAALKRRPVDYRTYGIGAQILR 332 (367)
T ss_pred hhhhhcCCCcccceehHHHHHHH
Confidence 68999999999999999999995
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3e-103 Score=791.28 Aligned_cols=304 Identities=46% Similarity=0.682 Sum_probs=290.9
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.|++|++||++||+|+||||+||++||||||||+|||++||+.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 477899999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++++|||||||+ +++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 7889999999998 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEE
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv 346 (449)
+|||||||+||+||+++++++||++|+||+|+|+|||+||+++|++|++++++++||+||+|++++|++. ++.||+||+
T Consensus 159 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv 237 (339)
T PRK09314 159 AVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFK 237 (339)
T ss_pred EEEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred ecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 013104 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (449)
Q Consensus 347 ~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTv 426 (449)
+|++.. ++||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+
T Consensus 238 ~G~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~-------------------- 290 (339)
T PRK09314 238 FGEIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE-------------------- 290 (339)
T ss_pred eCCCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC--------------------
Confidence 999953 899999999999999985 45599999999999999 9999999 89874
Q ss_pred hhhhhcCCCCCccchhhhhhccC
Q 013104 427 EANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 427 eAn~~lg~~~D~RdYgigAQIL~ 449 (449)
+| +.|+||+|||||+
T Consensus 291 -an-------~~RdygigaqIL~ 305 (339)
T PRK09314 291 -NN-------QVKDYGIGAQILK 305 (339)
T ss_pred -cc-------cccchhHHHHHHH
Confidence 22 4999999999995
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-87 Score=686.82 Aligned_cols=292 Identities=30% Similarity=0.458 Sum_probs=273.7
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
++.+|++||++||+|+||||+||++|| |||+|||++||+.||||++|++|++|++|++++|++|+||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999995 9999999999999999999999999999999999999999982
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.||++|. || +.||++||+.++++ +|.||++|||||| ||||||||||||.|+
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1233332 33 36999999999999 5899999999997 999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHH-hhhhhhhhhccCccCCCc-ccEEEEEEEecCCCceEEE
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRR-KRDRLVELAAAAPIPTMW-GPFKAHCYRSLLDGIEHIA 344 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~-~~e~lV~r~~~~~lpT~~-G~F~~~~Yr~~~dg~EHlA 344 (449)
+|||||+++++ + +|| +||+++|+|||+||. ++|++|++++++++||.+ |+|++++|++..++.||+|
T Consensus 137 avi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~A 205 (375)
T PRK08815 137 MVAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVA 205 (375)
T ss_pred EEEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEE
Confidence 99999999743 2 777 999999999999998 889999999999999995 9999999999999999999
Q ss_pred EEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCC
Q 013104 345 MVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHD 424 (449)
Q Consensus 345 Lv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~D 424 (449)
|++|++++++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+|
T Consensus 206 Lv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~d 284 (375)
T PRK08815 206 IVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLD 284 (375)
T ss_pred EEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCC
Confidence 99999988889999999999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred chhhhhhcCCCCCccchhhhhhccC
Q 013104 425 TVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 425 TveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
|++||..+|++.|.|+||+|||||+
T Consensus 285 t~~a~~~lg~~~D~RdygigAQIL~ 309 (375)
T PRK08815 285 TIDADAQLGFGPDERRYGSAVAMLR 309 (375)
T ss_pred chhhhhhcCCCccceeeeHHHHHHH
Confidence 9999999999999999999999995
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-77 Score=559.50 Aligned_cols=201 Identities=60% Similarity=0.971 Sum_probs=196.6
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.+.+|++||++||+|+||||+||++||||||||+||+.+||+.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++|+|||||||+. |+|||||.||+.|||.|++++++|+||++|||||||++++||||+|+|||||+|||||||||.|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 89999999999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhh
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e 310 (449)
+||||||++||+||+.+++++||++||||+|+|+|||+||++.|
T Consensus 159 ~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998765
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-74 Score=551.50 Aligned_cols=201 Identities=46% Similarity=0.825 Sum_probs=196.6
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCcc
Q 013104 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (449)
Q Consensus 108 ~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~ 187 (449)
|++|++||++||+|+||||+||++||||||||+|||++|||.||||+||++|+||+||++++|++|+||+|+.. |++.
T Consensus 14 ~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~ 91 (218)
T PRK00910 14 ITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNSA 91 (218)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999975 7777
Q ss_pred ccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCccE
Q 013104 188 LCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 267 (449)
Q Consensus 188 ~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Paa 267 (449)
++++||||||+++|++|||||.|||+|||+||++.++|+||++|||||||++++|||++|+||||||||||+|||+.|++
T Consensus 92 ~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~ 171 (218)
T PRK00910 92 NQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAG 171 (218)
T ss_pred CCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceE
Confidence 88999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhh
Q 013104 268 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (449)
Q Consensus 268 Vi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e 310 (449)
|||||||+||+||+++++++||++|+||+|+|+|||+||++++
T Consensus 172 vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 172 VLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998876
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=7.2e-74 Score=545.94 Aligned_cols=201 Identities=50% Similarity=0.818 Sum_probs=195.8
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.+++|++||++|++|+||||+||++||||||||++||.+|++.||||+||++|+||+||++++|++|+||+|++. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
.++++|||||||++|++|||||.|||+|||+|+++.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 78899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhh
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 309 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~ 309 (449)
+||||||++||+|++++++++||++|+||+|+|+|||+||+++
T Consensus 170 ~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999764
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.9e-72 Score=538.70 Aligned_cols=201 Identities=48% Similarity=0.776 Sum_probs=195.6
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCccc
Q 013104 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKL 188 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~ 188 (449)
++|++||++|++|+||||+||++||||||||++||++|+|.||||+||++|+||++|++++|++|+||+|+.. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999986 78888
Q ss_pred cCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCccEE
Q 013104 189 CTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 268 (449)
Q Consensus 189 ~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaV 268 (449)
+++||||||+++|++|||||.||++|||+||++.++|+||++|||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhh
Q 013104 269 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 311 (449)
Q Consensus 269 i~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~ 311 (449)
|||||++||+||+.+++++||++|+||+|+|+|||+|++++..
T Consensus 177 icEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~~ 219 (230)
T PRK00014 177 LCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGA 219 (230)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987643
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=7.8e-72 Score=528.05 Aligned_cols=197 Identities=53% Similarity=0.892 Sum_probs=190.3
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCcc
Q 013104 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (449)
Q Consensus 108 ~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~ 187 (449)
|++|++||++||+|+||||+||++||||||||+|||++||+.||||+||++|+||+||++++|++|+||+|++. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999986 7777
Q ss_pred ccCceEEEeecCCC-CCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 188 LCTAFTVSVDAKYG-TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 188 ~~taftvsVDa~~g-~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
++++||+|||+.++ ++|||||.||++|||+|+++.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 88898888876555 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHH
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 306 (449)
+|||||||+||+|++.+++++||++|+||+|+|+|||+||
T Consensus 160 ~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999996
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=5.9e-72 Score=527.47 Aligned_cols=194 Identities=63% Similarity=0.984 Sum_probs=180.0
Q ss_pred HHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCccccC
Q 013104 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (449)
Q Consensus 111 i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~t 190 (449)
|++||++|++|+||||+||++||||||||++||.+|++.||||+||++|+||+||++++|++|+||+|+.. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985 7788899
Q ss_pred ceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCccEEEE
Q 013104 191 AFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 270 (449)
Q Consensus 191 aftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~ 270 (449)
+|+|||||+.|++|||||.|||+|||+||+++++|+||++|||||||++++|||++|+||||||||||+|||+.|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHH
Q 013104 271 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (449)
Q Consensus 271 eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 306 (449)
|||++||+||+.+++++||++|+||+|+|+|||+||
T Consensus 159 eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999999999999999999999999999999997
No 15
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.7e-72 Score=556.97 Aligned_cols=333 Identities=53% Similarity=0.749 Sum_probs=324.0
Q ss_pred cceeccccccccccccccccC-CCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCC
Q 013104 67 TAIETQSDTIGFGTLGAEITP-KTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145 (449)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~ 145 (449)
..++.+++..+|+|++++|.| +++.|++.+.|+++|+|+..|.+|+++|+.+|.|++|+|+||++||||+||++++...
T Consensus 21 ~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~ 100 (357)
T KOG1284|consen 21 KPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNV 100 (357)
T ss_pred CcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcceecccc
Confidence 447889999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCccccCceEEEeecCCCCCCCCChhhHHHHHHHHhc-CCCC
Q 013104 146 TPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC-RDSK 224 (449)
Q Consensus 146 T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd-~~s~ 224 (449)
+++.++|+++|++|++|+.|..+...+|-||+|+....+.+...++|||+||+++|++||||++||+.|++.|++ ..+.
T Consensus 101 ~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~ 180 (357)
T KOG1284|consen 101 IREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDC 180 (357)
T ss_pred cchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhcccccCC
Confidence 999999999999999999999999999999999986657788899999999999999999999999999999999 5778
Q ss_pred CCCcccCCCccccccc-cCccccccChhHHHHHHHHHcCCCccEEEEEEeCC-CCcccChhHHHHHHhhcCCceecHHHH
Q 013104 225 PEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADL 302 (449)
Q Consensus 225 p~Df~rPGHVfPL~a~-~gGvl~R~GhtEAAvdLarlAGl~PaaVi~eiv~~-dG~ma~~~~l~~fA~~h~L~ivsi~dL 302 (449)
|+||.+|||++|++++ +|||++|.|||||+|+||.++|+.|.+++||++++ +|.|+++++++.||++|++|+++++|+
T Consensus 181 pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dl 260 (357)
T KOG1284|consen 181 PEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDL 260 (357)
T ss_pred hhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhH
Confidence 9999999999999999 69999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHH
Q 013104 303 IRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLA 382 (449)
Q Consensus 303 i~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~ 382 (449)
++|++++...|+++..++.||+||.|..++|++..++.||++.++|.+..+..++||+|++|+++||||+.+|+|++||+
T Consensus 261 iryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~sq~~ 340 (357)
T KOG1284|consen 261 IRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTGGSQLN 340 (357)
T ss_pred HHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEE
Q 013104 383 LAMKQIEAAGRGVLVYL 399 (449)
Q Consensus 383 ~Al~~I~~~G~GVlVYL 399 (449)
-+|++|+++|+|+++||
T Consensus 341 ~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 341 YFMRTIEAAGRGVFVAL 357 (357)
T ss_pred HHHHHHHhhcceeEEeC
Confidence 99999999999999997
No 16
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=6.5e-68 Score=507.91 Aligned_cols=202 Identities=50% Similarity=0.885 Sum_probs=197.0
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCc
Q 013104 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (449)
Q Consensus 107 ~~~~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~ 186 (449)
.+.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||+++++++|++|+||+|+.. |++
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred cccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCcc
Q 013104 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (449)
Q Consensus 187 ~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~Pa 266 (449)
..+++||||||++.|++|||||.||++|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 78899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhh
Q 013104 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (449)
Q Consensus 267 aVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e 310 (449)
+|+|||||+||+|++.+++.+||++|+||+|+++|||+||+++|
T Consensus 170 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998876
No 17
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=6.2e-67 Score=500.48 Aligned_cols=193 Identities=28% Similarity=0.419 Sum_probs=179.1
Q ss_pred cHHHHHHHHHCCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCC------
Q 013104 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKD------ 183 (449)
Q Consensus 110 ~i~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~------ 183 (449)
+|++||++||+|+||||+||++||||||||++|+++|||.||||+||++|+||+||++++|++|+||+|++...
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ---CCcccc--CceEEEeecCCCCCCCCChhhHHHHHHHHhcC--------CC----CCCCcccCCCccccccccCcccc
Q 013104 184 ---NEEKLC--TAFTVSVDAKYGTTTGVSANDRAKTVLALACR--------DS----KPEDFNRPGHIFPLKYREGGVLK 246 (449)
Q Consensus 184 ---~~~~~~--taftvsVDa~~g~tTGISA~DRA~TIr~LAd~--------~s----~p~Df~rPGHVfPL~a~~gGvl~ 246 (449)
|++.++ ++|||||||+ |++|||||.|||+|||+||++ .. .|+||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNHV-KTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcCC-CCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 333444 7999999985 999999999999999999983 22 27999999999999998 8999
Q ss_pred ccChhHHHHHHHHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHH
Q 013104 247 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (449)
Q Consensus 247 R~GhtEAAvdLarlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 306 (449)
|+||||||||||||||+.|++|||||||++ .|++++++++||++|+||+|+|+|||+|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 999999999999999999999999999974 59999999999999999999999999974
No 18
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-46 Score=354.69 Aligned_cols=136 Identities=60% Similarity=1.021 Sum_probs=132.4
Q ss_pred hhhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 013104 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (449)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~ 391 (449)
++++++++++||++|.|++++|++..++.+|+|+|+|++.. +||||||||||+|||+|||.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57889999999999999999999999999999999999975 79999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 392 G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
|+||||||| |||||||+.+|++||.|||+|.||++||.++||+.|+|+||+|||||+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~ 137 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILK 137 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999999995
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=4.1e-44 Score=331.54 Aligned_cols=136 Identities=65% Similarity=1.094 Sum_probs=112.3
Q ss_pred hhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 013104 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392 (449)
Q Consensus 313 V~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G 392 (449)
|+|+++.++||+||+|++++|++..++.+|+|||+|++++++||||||||+|+++|+|++.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 393 ~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
+||||||+ ||+||+|+.+|+++|.+|++|.||++||.+++++.|.|+||+|||||+
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~ 136 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILR 136 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHH
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHH
Confidence 99999997 999999999999999999999999999999999999999999999995
No 20
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.3e-39 Score=308.29 Aligned_cols=137 Identities=52% Similarity=0.885 Sum_probs=131.6
Q ss_pred hhhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 013104 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (449)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~ 391 (449)
.|+++++.++||.||.|++++|++..++.+|+|||+|++.+++|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 37889999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 392 G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
|+||||||+ |++||+|+.+|+++|.+|+.|.+++++|..++++.|.|+||+|||||+
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~ 138 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLK 138 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHH
Confidence 999999998 899999999999999999988899889888999999999999999995
No 21
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=2.2e-39 Score=305.47 Aligned_cols=135 Identities=54% Similarity=0.893 Sum_probs=130.1
Q ss_pred hhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 013104 314 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGR 393 (449)
Q Consensus 314 ~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~ 393 (449)
+++++.++||.||.|++++|++..++.+|+|||+|++.+++|||||||++|.++|+|++.+|||++||++||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 394 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 394 GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
||||||+ |+++|+|+.+|+++|++|++|.+++++|..++++.|.|+||+|||||+
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~ 135 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILE 135 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHH
Confidence 9999998 899999999999999999999999999999999999999999999995
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=3.2e-37 Score=290.89 Aligned_cols=137 Identities=61% Similarity=1.044 Sum_probs=130.0
Q ss_pred hhhhhccCccCCCcccEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 013104 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (449)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~ 391 (449)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|.++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhhhhhcCCCCCccchhhhhhccC
Q 013104 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 392 G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveAn~~lg~~~D~RdYgigAQIL~ 449 (449)
|+||||||+ +++++.|+.+|+++|.+|+++.++.+++..++++.|.|+||+|||||+
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~ 137 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILR 137 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHH
Confidence 999999998 899999999999999999888888778777889999999999999995
No 23
>PRK07198 hypothetical protein; Validated
Probab=99.95 E-value=3.7e-28 Score=247.81 Aligned_cols=150 Identities=27% Similarity=0.425 Sum_probs=118.0
Q ss_pred HHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccC--ccCCCcccEEEEEEEecCCCceEEEEEecccC----CCCcee
Q 013104 284 KLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAA--PIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIG----DGQDIL 357 (449)
Q Consensus 284 ~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~--~lpT~~G~F~~~~Yr~~~dg~EHlALv~G~i~----~~~~vL 357 (449)
+|--.|+++|+. -.+| +..+.|.+.-. +|-|+ -.++.|+....+.+|+ +.|+++ +..|+|
T Consensus 176 ylpgva~rfg~~---e~~l------rr~lfe~t~g~~pel~t~---~~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVL 241 (418)
T PRK07198 176 YLPGVAERFGVS---ETDL------RRTLFEQTGGMFPELVTR---PDLEVFLPPIGGQTVY--IFGDVTDLADPETELT 241 (418)
T ss_pred cccchHHHcCCC---HHHH------HHHHHHHcCCCCceeeec---cceEEEcCCCCCeeEE--EECCcccccCCCCCce
Confidence 455567777754 2222 22244444221 23342 3689999999999965 889984 356899
Q ss_pred EEEccCCccccccCCCCCCChHHH----HHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccC--CCCchhhh--
Q 013104 358 VRVHSECLTGDIFGSARCDCGNQL----ALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD--GHDTVEAN-- 429 (449)
Q Consensus 358 VRVHSeCltgDvfgs~~CDCg~qL----~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~--G~DTveAn-- 429 (449)
|||||+|++||+|||.+|||+.|| +.||++|+++|+||||||+ ||||++|+.+|+++|++|+. |.||+++|
T Consensus 242 VRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr-QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~ 320 (418)
T PRK07198 242 CRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KEGRALGEVTKFLVYNARKRQVGGDTAATYFA 320 (418)
T ss_pred EEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC-CCCcchhHHHHHHHHhhhhhccCCchhhhhhc
Confidence 999999999999999999999985 6889999999999999998 99999999999999999853 89999975
Q ss_pred --hh-cCCCCCccchhhhhhccC
Q 013104 430 --EE-LGLPVDSREYGIGAQLKV 449 (449)
Q Consensus 430 --~~-lg~~~D~RdYgigAQIL~ 449 (449)
+. +|+ .|.|+||+|||||+
T Consensus 321 rte~~~G~-~D~RdyGlGAQILr 342 (418)
T PRK07198 321 RTECVAGV-QDMRFQELMPDVLH 342 (418)
T ss_pred ccccccCC-CcceehhHHHHHHH
Confidence 23 454 59999999999995
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.18 E-value=1.2e-11 Score=125.00 Aligned_cols=95 Identities=28% Similarity=0.418 Sum_probs=87.9
Q ss_pred CCCceeEEEccCCccccccCCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchh
Q 013104 352 DGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVE 427 (449)
Q Consensus 352 ~~~~vLVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~---~-~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTve 427 (449)
.+..+.||.|++|.|+..++|.+|+|+.|++++=..|. + .| |||.|++ |+++|++|..++++|.+|+-|.++++
T Consensus 155 ~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~l~elv~q 232 (357)
T KOG1284|consen 155 HGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGVLGELVVQ 232 (357)
T ss_pred cCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhhhhhhhhc
Confidence 45668999999999999999999999999999988887 6 57 9999997 99999999999999999999999999
Q ss_pred hhhhcCCCCCccchhhhhhcc
Q 013104 428 ANEELGLPVDSREYGIGAQLK 448 (449)
Q Consensus 428 An~~lg~~~D~RdYgigAQIL 448 (449)
++.-+-+++|.|.|+.+-.|+
T Consensus 233 ~~g~m~~lpd~r~fa~~~~i~ 253 (357)
T KOG1284|consen 233 ADGSMARLPDCRSFAAEHAIP 253 (357)
T ss_pred CCcccccCccHhhhhHhhcCC
Confidence 999999999999999876664
No 25
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=67.33 E-value=20 Score=39.36 Aligned_cols=158 Identities=26% Similarity=0.337 Sum_probs=94.0
Q ss_pred HHHHHHHHCCcEEEEEeCCCCCCcccEEEEc-----CCCCHHHHHHHHHh----------CCCcEEeecChhhHhhcCCC
Q 013104 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMAA-----SLVTPEAMAFIVRH----------GTGIVCVSMKGEDLERLELP 176 (449)
Q Consensus 112 ~~Ai~aLr~G~~Vvv~Dde~rEnEgdLv~aA-----e~~T~e~vafm~r~----------~~Glicval~~~~~~rL~Lp 176 (449)
.+.-+||.+|+|||.... -++.-+ -..|+-.+...+|. ..|.+|+-++++.+.+|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 578889999999998753 122211 11222233333333 35899999999999999875
Q ss_pred cccccCCCCccccCceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChh-HHHH
Q 013104 177 LMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT-EASV 255 (449)
Q Consensus 177 ~m~~~~~~~~~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~Ght-EAAv 255 (449)
.-... .-+...-++++.+-.. |-||+-.+.- +|.. ..-.-|..||- |||-+-+-|+ .++-
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtvaaTm~-------iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVAATMI-------IAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchhhhhh-------hccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 32111 2233446677777654 4444432211 1211 11234667773 6664444444 4566
Q ss_pred HHHHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceecH
Q 013104 256 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (449)
Q Consensus 256 dLarlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi 299 (449)
||-.| |-.|++|+|+=|- +..+.+...+|-+.++.++++.
T Consensus 164 dl~el-grtpvavv~agvk---siLdip~tle~letq~V~vvtl 203 (614)
T KOG3009|consen 164 DLTEL-GRTPVAVVSAGVK---SILDIPKTLEYLETQGVVVVTL 203 (614)
T ss_pred hhhhh-cCCcceEEecchh---hhccchhhhhhhccccEEEEEe
Confidence 66666 8899999998553 4566677777777777777764
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=57.60 E-value=15 Score=40.97 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=49.1
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+ ...++|+.|-=...+|--. =+=+.+..||||-|.. ..|.-.+++.+...|.|||+.+.|..|-
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYtGD 108 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYTGD 108 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccHHH
Confidence 56665444 5789999875333343111 1224577899998876 6899999999987678999999877663
No 27
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=57.14 E-value=18 Score=37.83 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=46.8
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+ ...++++.|-=+..+|--. =+=+.|..||||-|.. ..|.-.|++.+. .|.|||+...|..|-
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYtGD 109 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYSGD 109 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHHH
Confidence 35555444 5688998875333343111 1234578899998877 588999999986 467999988766653
No 28
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=54.03 E-value=16 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHCCcEEEEEeCC
Q 013104 109 ASISEAIEDIRQGKLVIVVDDE 130 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dde 130 (449)
..|++...+|++|+.||++|.+
T Consensus 37 ~kv~qv~~qL~~G~avI~~se~ 58 (70)
T PF06794_consen 37 EKVEQVKQQLKSGEAVIVFSEL 58 (70)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TT
T ss_pred HHHHHHHHHHHcCCEEEEECCc
Confidence 4699999999999999999854
No 29
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=53.01 E-value=25 Score=37.12 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=46.8
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+........++|+.|-=+..+|.-. =+=+.+..||||-|.. ..|.-.|++.+. .|.|||+.+.|..|-
T Consensus 34 vv~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtGD 109 (356)
T PRK11468 34 YVTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTGD 109 (356)
T ss_pred EEEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHHh
Confidence 4455444435678998875333344111 1224477899998876 689999999965 567999999877663
No 30
>PRK04966 hypothetical protein; Provisional
Probab=52.80 E-value=15 Score=30.30 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHCCcEEEEEeCC
Q 013104 109 ASISEAIEDIRQGKLVIVVDDE 130 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dde 130 (449)
..|++...+|++|+.||++|..
T Consensus 37 ~kv~qv~~qL~~G~~viv~se~ 58 (72)
T PRK04966 37 QKVADVKRQLQSGEAVLVWSEL 58 (72)
T ss_pred HHHHHHHHHHHcCCEEEEECCC
Confidence 4799999999999999999854
No 31
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=46.85 E-value=30 Score=36.11 Aligned_cols=70 Identities=23% Similarity=0.422 Sum_probs=46.6
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+ ...++++.|-=+..+|.-. =+=+.+..||||-|.. .+|.-.|++.+. .|.|||+.+.|-.|-
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYtGD 106 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFEAD 106 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCHHH
Confidence 34554443 5789999875333344111 1224577899998877 588999999976 467999998766653
No 32
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=45.46 E-value=12 Score=39.03 Aligned_cols=68 Identities=24% Similarity=0.480 Sum_probs=40.3
Q ss_pred EEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCC
Q 013104 332 CYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEG 404 (449)
Q Consensus 332 ~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEg 404 (449)
.|+... ....++++.|-=+..+|... =+=+.|..||||-|.. ..|.-.|++.+ ..+.|||+.+.|..|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH
Confidence 455443 66788898764333333100 1234577899998876 68999999998 567799999876665
No 33
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=45.45 E-value=31 Score=36.05 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=47.3
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+....++++.|-=+..+|.-. =+=+.|..||||-|.. ..|.-.+++.+.. |.|||+...|-.|-
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYtGD 110 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYTGD 110 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcHHH
Confidence 4566544435688999875333344111 1224577899998876 6889999988764 67999988766653
No 34
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=40.93 E-value=38 Score=37.93 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=46.4
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+ ...++|+.|-=+..+|--. =+=+.|..||||-|.. ..|.-.+++.+. .|.|||+.+.|..|-
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtGD 108 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYAGD 108 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHHH
Confidence 44554443 5688999875333344111 1224577899998876 688999998886 567999988776653
No 35
>PRK08296 hypothetical protein; Provisional
Probab=40.35 E-value=31 Score=38.89 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=54.4
Q ss_pred CCcEEEEEeCCC-CCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCccccCceE
Q 013104 120 QGKLVIVVDDED-RENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (449)
Q Consensus 120 ~G~~Vvv~Dde~-rEnEgdLv~aAe~~T~e~vafm~r~~~Glicval~-----~~~~~rL~Lp~m~~~~~~~~~~~taft 193 (449)
.|+..||.|.++ .+-+..-|+.++..+|..+..| ....|+|+-.=. .-.|+.+|+|.++..............
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 466556655333 1222345566777888888877 668888876522 457899999988875333344567889
Q ss_pred EEeecCCCC
Q 013104 194 VSVDAKYGT 202 (449)
Q Consensus 194 vsVDa~~g~ 202 (449)
|+||..+|+
T Consensus 590 V~vDg~~G~ 598 (603)
T PRK08296 590 LRVDGTKGV 598 (603)
T ss_pred EEEECCCCE
Confidence 999986665
No 36
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.17 E-value=78 Score=32.71 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCC-CCCcccE--EEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCC
Q 013104 109 ASISEAIEDIRQGKLVIVVDDED-RENEGDL--IMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dde~-rEnEgdL--v~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~ 185 (449)
..|...+++||+|+.|-+.-|+| .++++.. .|+-+..|+-..+.|++.++--|. |.+... |.
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vi-------------p~~~~r--~~ 246 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVV-------------PVFPVR--NP 246 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEE-------------EEEEEE--eC
Confidence 46999999999999995555555 4444422 567789999999999987763332 222211 22
Q ss_pred ccccCceEEEeecCCCCCCCCChhhHHHHHHHHhc
Q 013104 186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC 220 (449)
Q Consensus 186 ~~~~taftvsVDa~~g~tTGISA~DRA~TIr~LAd 220 (449)
.+..|++.|.+. .|+--..|=+.+.+.+.+
T Consensus 247 --~g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 247 --DGSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred --CCCeEEEEEecc---ccCCCCCCHHHHHHHHHH
Confidence 345689999762 234444455556666554
No 37
>PRK00304 hypothetical protein; Provisional
Probab=38.31 E-value=51 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHCCcEEEEEeCC
Q 013104 109 ASISEAIEDIRQGKLVIVVDDE 130 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dde 130 (449)
..|++...+|++|+.||++|..
T Consensus 36 ~kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 36 TRVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred HHHHHHHHHHHcCCEEEEECCC
Confidence 4689999999999999999853
No 38
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=38.07 E-value=22 Score=29.01 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=42.5
Q ss_pred cccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCccccCceEEEeecC
Q 013104 135 EGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 199 (449)
Q Consensus 135 EgdLv~aAe~~T~e~vafm~r~~~Glicval~-----~~~~~rL~Lp~m~~~~~~~~~~~taftvsVDa~ 199 (449)
+.+.|+-++..+|..+.+......|+|+-.=. .=.|+.|++|..+............-.|.||..
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~~~~~~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVGDATEAIKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTTTHHHHSCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEeeccHhhccCCCCEEEEECC
Confidence 45677778888998888445667898876521 457889999988875322333455668888864
No 39
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=38.02 E-value=49 Score=34.63 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=46.8
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+.... ...++|+.|-=+..+|.-. =+=+.|..||||-|.. ..|.-.|++.+. .|.|||+...|-.|-
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~-~~~GvL~ivkNYtGD 108 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVP-KGKGVFFIIKNFEAD 108 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHHH
Confidence 45565443 5789999875333344111 1224577899998876 689999998875 456999988776663
No 40
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=36.87 E-value=21 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.7
Q ss_pred hHHHHHHhhcCCceecHHHH
Q 013104 283 PKLRQFAQTENLKIISIADL 302 (449)
Q Consensus 283 ~~l~~fA~~h~L~ivsi~dL 302 (449)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46899999999999999885
No 41
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=31.41 E-value=65 Score=36.25 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=46.4
Q ss_pred EEEEecCCCceEEEEEecccCCCCceeE-----EEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013104 331 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (449)
Q Consensus 331 ~~Yr~~~dg~EHlALv~G~i~~~~~vLV-----RVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgR 405 (449)
+.|+...+ ...++||.|-=...+|--. =+=+.+..||||-|.. ..|.-.+++.+. .|.|||+.+.|..|-
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtGD 111 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTGD 111 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHHH
Confidence 45565443 5688999875333344111 1224467799998876 689999999775 567999998776663
No 42
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=29.80 E-value=55 Score=26.28 Aligned_cols=21 Identities=43% Similarity=0.809 Sum_probs=16.4
Q ss_pred CCcccHHHHHHHHHCCcEEEE
Q 013104 106 KGFASISEAIEDIRQGKLVIV 126 (449)
Q Consensus 106 ~~~~~i~~Ai~aLr~G~~Vvv 126 (449)
..|+.++++.++|++|++|++
T Consensus 7 ~~~~D~~~i~~~l~~g~~Viv 27 (73)
T PF04472_consen 7 KSFEDAREIVDALREGKIVIV 27 (73)
T ss_dssp SSGGGHHHHHHHHHTT--EEE
T ss_pred CCHHHHHHHHHHHHcCCEEEE
Confidence 357889999999999999876
No 43
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.54 E-value=1.3e+02 Score=31.35 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=77.6
Q ss_pred HHHHHHHHcC--CCccEEEEEEeCCC--CcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhcc----------
Q 013104 253 ASVDLAVLAG--LEPVAVLCEIVDDD--GSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAA---------- 318 (449)
Q Consensus 253 AAvdLarlAG--l~PaaVi~eiv~~d--G~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~---------- 318 (449)
|+.-|-.|.+ ..-++|+..-=... |.-.......++|.+||||+..-+.|..- ..++++..
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~-----e~~~~l~~l~~D~ivvva 87 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDP-----EFLEELAALDPDLIVVVA 87 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcH-----HHHHHHhccCCCEEEEEe
Confidence 3344444444 55556555421112 33455577899999999999988766532 11111111
Q ss_pred --CccC------CCcccEEEEE-----EEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCC-----ChHH
Q 013104 319 --APIP------TMWGPFKAHC-----YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQ 380 (449)
Q Consensus 319 --~~lp------T~~G~F~~~~-----Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CD-----Cg~q 380 (449)
.-|| -++|-+++|. ||- -..-|.|++.|+-..+ .++-+|..+--+||++...+|. ....
T Consensus 88 yG~ilp~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~ 164 (307)
T COG0223 88 YGQILPKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGS 164 (307)
T ss_pred hhhhCCHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHH
Confidence 1122 1478888776 552 2245889999986555 4788999998899999988764 4445
Q ss_pred HHHHHHHH
Q 013104 381 LALAMKQI 388 (449)
Q Consensus 381 L~~Al~~I 388 (449)
|..-|..+
T Consensus 165 L~~kLa~~ 172 (307)
T COG0223 165 LHDKLAEL 172 (307)
T ss_pred HHHHHHHH
Confidence 55544443
No 44
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=27.14 E-value=1.3e+02 Score=29.80 Aligned_cols=49 Identities=27% Similarity=0.486 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCC-------------CCCc-ccEEEEcCCCCHHHHHHHHHhCCCcEEeecChh
Q 013104 120 QGKLVIVVDDED-------------RENE-GDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168 (449)
Q Consensus 120 ~G~~Vvv~Dde~-------------rEnE-gdLv~aAe~~T~e~vafm~r~~~Glicval~~~ 168 (449)
+|+-|||+||-- |-++ .++++|.--+.++...-|.+.+-+++|+.++..
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 356789998731 1111 257777777777777788888899999888643
No 45
>PRK06354 pyruvate kinase; Provisional
Probab=27.04 E-value=1.3e+02 Score=33.85 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=54.2
Q ss_pred CCcEEEEEeCCCCC-CcccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCccccCceE
Q 013104 120 QGKLVIVVDDEDRE-NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (449)
Q Consensus 120 ~G~~Vvv~Dde~rE-nEgdLv~aAe~~T~e~vafm~r~~~Glicval~-----~~~~~rL~Lp~m~~~~~~~~~~~taft 193 (449)
.|..+++-+.++-+ -+..-|+.++..+|+.+..| +...|+|+-.=. .-.|+.||+|.++....-.+.......
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 56555544433311 22345677778999887775 889999887522 448999999998875322344456789
Q ss_pred EEeecCCCC
Q 013104 194 VSVDAKYGT 202 (449)
Q Consensus 194 vsVDa~~g~ 202 (449)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999986554
No 46
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=69 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHCCcEEEEEeC
Q 013104 109 ASISEAIEDIRQGKLVIVVDD 129 (449)
Q Consensus 109 ~~i~~Ai~aLr~G~~Vvv~Dd 129 (449)
-.++++..+|++|+.|||++.
T Consensus 37 qkv~~~r~qlq~GeaVivwse 57 (72)
T COG3089 37 QKVADVRRQLQSGEAVIVWSE 57 (72)
T ss_pred HHHHHHHHHHhcCceEEEecc
Confidence 368999999999999999974
No 47
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.00 E-value=1.4e+02 Score=26.28 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=37.9
Q ss_pred cChhHHHHHHHHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceec
Q 013104 248 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 298 (449)
Q Consensus 248 ~GhtEAAvdLarlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivs 298 (449)
-.|+...+..++..|+...+++....+++-.+ .......+++..++|++-
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 55888999999999999999999877653222 224567788888888764
No 48
>PLN02880 tyrosine decarboxylase
Probab=24.77 E-value=1.3e+02 Score=32.78 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=41.3
Q ss_pred ccChhHHHHHHHHHcCCCccEEEEEEeC-CCCcccChhHHHHHHhhcCCce
Q 013104 247 RAGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKI 296 (449)
Q Consensus 247 R~GhtEAAvdLarlAGl~PaaVi~eiv~-~dG~ma~~~~l~~fA~~h~L~i 296 (449)
+...-|.+++-.+.+|+.|.+|++..=. .-|...+.+++.++|++||+.+
T Consensus 222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 3445677888788899999999998643 3488999999999999999987
No 49
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.43 E-value=1.5e+02 Score=26.01 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=45.2
Q ss_pred CCCCcccCCCccccccccCccccccChhHHHHHH-HHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHH
Q 013104 224 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL-AVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 302 (449)
Q Consensus 224 ~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdL-arlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dL 302 (449)
.+.+|.++|=+ .|. .|..-+....+.-.++ -+|+...-+|++..+-.. -. .=.+++.++|.++++|++.+..=
T Consensus 35 d~~~~l~~gEl-vlt---tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~-~~-~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 35 DPSDWLRGGEL-VLT---TGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY-LD-EIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CHHHhCCCCeE-EEE---CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc-cc-cCCHHHHHHHHHcCCCEEEeCCC
Confidence 35678787754 222 2222233233333443 466666666666655322 12 22378999999999999988765
Q ss_pred HHHHH
Q 013104 303 IRYRR 307 (449)
Q Consensus 303 i~yr~ 307 (449)
+.|..
T Consensus 109 ~~f~~ 113 (123)
T PF07905_consen 109 VPFSD 113 (123)
T ss_pred CCHHH
Confidence 55543
No 50
>PLN02398 hydroxyacylglutathione hydrolase
Probab=23.29 E-value=6.4e+02 Score=26.33 Aligned_cols=138 Identities=15% Similarity=0.084 Sum_probs=74.5
Q ss_pred ccChhHHHHHHHHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcc
Q 013104 247 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWG 326 (449)
Q Consensus 247 R~GhtEAAvdLarlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G 326 (449)
-+|..+.-++..+-.|+....|++.=-..|.. --+.+|.++++.+++.-..-..+....+ ..+.+.. ....|
T Consensus 104 DP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~----GG~~~L~~~~ga~V~g~~~~~~~i~~~d---~~v~dGd-~i~lg 175 (329)
T PLN02398 104 DPSEAVPVIDALSRKNRNLTYILNTHHHYDHT----GGNLELKARYGAKVIGSAVDKDRIPGID---IVLKDGD-KWMFA 175 (329)
T ss_pred cCCCHHHHHHHHHhcCCCceEEEECCCCchhh----CCHHHHHHhcCCEEEEehHHhhhccCCc---EEeCCCC-EEEEC
Confidence 35555556666666788877777754444422 1234566777888876533111110000 0000100 11123
Q ss_pred cEEEEEEEecCCCceEEEEEecccCCCCceeEEEccCCccccccCCCCCC-----ChHHHHHHHHHHHHcCCEEEEEEeC
Q 013104 327 PFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAMKQIEAAGRGVLVYLRG 401 (449)
Q Consensus 327 ~F~~~~Yr~~~dg~EHlALv~G~i~~~~~vLVRVHSeCltgDvfgs~~CD-----Cg~qL~~Al~~I~~~G~GVlVYLr~ 401 (449)
.+++.++...-....|+++...+ . ...++||.+-+..|. ...|+.++|++|.+-..-.+||- +
T Consensus 176 g~~l~vi~tPGHT~GhI~~~~~~----~-------~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp-G 243 (329)
T PLN02398 176 GHEVLVMETPGHTRGHISFYFPG----S-------GAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC-G 243 (329)
T ss_pred CeEEEEEeCCCcCCCCEEEEECC----C-------CEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC-C
Confidence 44555554444445677775421 1 125678866555542 33688899999988766677876 5
Q ss_pred CCC
Q 013104 402 HEG 404 (449)
Q Consensus 402 qEg 404 (449)
||.
T Consensus 244 Hgy 246 (329)
T PLN02398 244 HEY 246 (329)
T ss_pred CCC
Confidence 875
No 51
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=22.18 E-value=72 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=23.7
Q ss_pred EEEEeCCCCcc---cChhHHHHHHhhcCCceecHH
Q 013104 269 LCEIVDDDGSM---ARLPKLRQFAQTENLKIISIA 300 (449)
Q Consensus 269 i~eiv~~dG~m---a~~~~l~~fA~~h~L~ivsi~ 300 (449)
...+++++|++ ++..+|.+.|++.+|-+|-++
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~ 48 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVS 48 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEc
Confidence 45677888864 688999999999999888765
No 52
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.54 E-value=2.8e+02 Score=30.41 Aligned_cols=203 Identities=19% Similarity=0.162 Sum_probs=107.7
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCCcccCCCccccccccCccccccChhHHHHHHHHHcCCCccEEEEEEeCCCCcccCh
Q 013104 203 TTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARL 282 (449)
Q Consensus 203 tTGISA~DRA~TIr~LAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~eiv~~dG~ma~~ 282 (449)
.|-++..|...-+..|.+-....-+.- +|--|+...+ .....-+|.--.|.+...-.+..+++...|--|--...
T Consensus 19 ~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~-ggatfd~~~~----Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~ 93 (467)
T PRK14041 19 ATRMRTEDMLPALEAFDRMGFYSMEVW-GGATFDVCVR----FLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYA 93 (467)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEec-CCccchhhhc----ccCCCHHHHHHHHHHhCCCCEEEEEeccccccCccccc
Confidence 367889999999999888754333321 3333332111 12233455555555543333444444433322332222
Q ss_pred hH----HHHHHhhcCCceecHHHHHHHHHhhhhhhhhhccCccCCCcccEEEEEEEe-cCCCceEE-EEEecccCCCCce
Q 013104 283 PK----LRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRS-LLDGIEHI-AMVKGEIGDGQDI 356 (449)
Q Consensus 283 ~~----l~~fA~~h~L~ivsi~dLi~yr~~~e~lV~r~~~~~lpT~~G~F~~~~Yr~-~~dg~EHl-ALv~G~i~~~~~v 356 (449)
++ ..+-|.++|+.++.+-+=.....+-+..++.....-.... | ..+|-. .....+.+ .+.+ .+..-
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~-~---~i~~t~~p~~t~e~~~~~a~-~l~~~--- 165 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ-G---AISYTVSPVHTLEYYLEFAR-ELVDM--- 165 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE-E---EEEeccCCCCCHHHHHHHHH-HHHHc---
Confidence 22 2456788999988877655555544445544432211111 0 122221 11111111 1111 11111
Q ss_pred eEEEccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchhh
Q 013104 357 LVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 428 (449)
Q Consensus 357 LVRVHSeCltgDvfgs~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEgRGiGl~~Klray~Lqd~G~DTveA 428 (449)
=+|+.|+ .|..|... +++...-++.+.++= ++-|-++.|+.+|.++.|-+.|+ +.|.|.++.
T Consensus 166 --Gad~I~i-~Dt~G~l~---P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAi---eaGad~vD~ 227 (467)
T PRK14041 166 --GVDSICI-KDMAGLLT---PKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAV---EAGADMFDT 227 (467)
T ss_pred --CCCEEEE-CCccCCcC---HHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHH---HhCCCEEEe
Confidence 1344554 67777655 677777777777653 47788889999999999999986 457666554
No 53
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.51 E-value=1.7e+02 Score=28.89 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=35.0
Q ss_pred cccChh-HHHHHHHHHcCCCccEEEEEEeCCCCcccChhHHHHHHhhcCCceecHH
Q 013104 246 KRAGHT-EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIA 300 (449)
Q Consensus 246 ~R~Ght-EAAvdLarlAGl~PaaVi~eiv~~dG~ma~~~~l~~fA~~h~L~ivsi~ 300 (449)
-+.|.| .++++|++-+|-.+++++|-+-..++ ..++..+++++|+.++-
T Consensus 186 i~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~------~~~~l~~~~~vpv~sl~ 235 (238)
T PRK08558 186 IRSGETQRALLDLARQAGADVVGVFFLIAVGEV------GIDRAREETDAPVDALY 235 (238)
T ss_pred cccCHHHHHHHHHHHHcCCEEEEEEEEEecCch------HHHHHhHhcCCCEEEEE
Confidence 456666 67899999999999998886543322 24445566899988753
No 54
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=20.43 E-value=2.2e+02 Score=28.80 Aligned_cols=101 Identities=27% Similarity=0.347 Sum_probs=56.1
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCccccCceEEEeecCCCCCCCCChhhHH
Q 013104 133 ENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRA 212 (449)
Q Consensus 133 EnEgdLv~aAe~~T~e~vafm~r~~~Glicval~~~~~~rL~Lp~m~~~~~~~~~~~taftvsVDa~~g~tTGISA~DRA 212 (449)
||++|.=+.-. +.|+.++.|.+-. .+..+.+++|.=+. .++-|..
T Consensus 49 eN~~D~Py~~~-~~~etvaaM~~i~---------~~v~~~~~~p~GVn------------vL~nd~~------------- 93 (254)
T PF03437_consen 49 ENMGDVPYPKR-VGPETVAAMARIA---------REVRREVSVPVGVN------------VLRNDPK------------- 93 (254)
T ss_pred ecCCCCCccCC-CCHHHHHHHHHHH---------HHHHHhCCCCEEee------------eecCCCH-------------
Confidence 47888877666 9999999998843 33344444542111 1111111
Q ss_pred HHHHHHhcCCCCCCCccc-CCCccccccccCccccccChhHHHHHHHHHcCCCccEEEEEEeCC
Q 013104 213 KTVLALACRDSKPEDFNR-PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD 275 (449)
Q Consensus 213 ~TIr~LAd~~s~p~Df~r-PGHVfPL~a~~gGvl~R~GhtEAAvdLarlAGl~PaaVi~eiv~~ 275 (449)
.+|+-..+...||.| ..+++-....+ |+++ +.....+.+-+..|.. +.+++.+-..
T Consensus 94 ---aalaiA~A~ga~FIRv~~~~g~~~~d~-G~~~--~~a~e~~r~R~~l~a~-v~ilaDV~~k 150 (254)
T PF03437_consen 94 ---AALAIAAATGADFIRVNVFVGAYVTDE-GIIE--GCAGELLRYRKRLGAD-VKILADVHVK 150 (254)
T ss_pred ---HHHHHHHHhCCCEEEecCEEceecccC-cccc--ccHHHHHHHHHHcCCC-eEEEeeechh
Confidence 112111223469999 88877665544 4443 2223344444556667 8888887543
No 55
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=20.40 E-value=1.8e+02 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=27.8
Q ss_pred CccEEEEE-EeCCCCcccChhHHHHHHhhcCCceec
Q 013104 264 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKIIS 298 (449)
Q Consensus 264 ~PaaVi~e-iv~~dG~ma~~~~l~~fA~~h~L~ivs 298 (449)
.+..|+.+ +.+..|..++.+++.++|++||+.+|.
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMV 205 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 45566665 346689999999999999999998873
No 56
>PLN02590 probable tyrosine decarboxylase
Probab=20.22 E-value=1.9e+02 Score=32.24 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=40.6
Q ss_pred ccChhHHHHHHHHHcCCCccEEEEEEeC-CCCcccChhHHHHHHhhcCCce
Q 013104 247 RAGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKI 296 (449)
Q Consensus 247 R~GhtEAAvdLarlAGl~PaaVi~eiv~-~dG~ma~~~~l~~fA~~h~L~i 296 (449)
+...-|++++-.+.+|+.|..|++..=. .-|..-+.+++.++|++|++-+
T Consensus 270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~Wl 320 (539)
T PLN02590 270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWL 320 (539)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeE
Confidence 3445678888888899999999998743 3488889999999999999865
Done!