RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013104
(449 letters)
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 761 bits (1967), Expect = 0.0
Identities = 308/375 (82%), Positives = 340/375 (90%), Gaps = 1/375 (0%)
Query: 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
D+ FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60
Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV K+NEEK+ TAFT
Sbjct: 61 NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120
Query: 194 VSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 253
V+VDAK+GTTTGVSA+DRAKT+LALA DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180
Query: 254 SVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312
+VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+ LKIISIADLIRYRRKR++L
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
VE A A +PT WG F A+CYRS LDGIEHIA VKG+IGDGQD+LVRVHSECLTGDIFGS
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGS 300
Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
ARCDCGNQLALAM+ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+G DTVEANEEL
Sbjct: 301 ARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEEL 360
Query: 433 GLPVDSREYGIGAQL 447
GLPVDSREYGIGAQ+
Sbjct: 361 GLPVDSREYGIGAQI 375
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 593 bits (1531), Expect = 0.0
Identities = 218/340 (64%), Positives = 266/340 (78%), Gaps = 2/340 (0%)
Query: 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK 166
F SI EAI DI GK VIVVDDEDRENEGDLI AA TPE +AF+VRH +G VCV +
Sbjct: 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLT 62
Query: 167 GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPE 226
ED +RL+LP MV H N++ TAFTVSVDA G TTG+SA DRA T+ LA SKP
Sbjct: 63 EEDADRLDLPPMVAH--NQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPA 120
Query: 227 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLR 286
DF RPGH+FPL+ + GGVL+RAGHTEA+VDLA LAGL+P V+CEIV++DG+MAR+P+LR
Sbjct: 121 DFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELR 180
Query: 287 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346
FA +L +I+IADLI YRR+ ++LVE A +PT +G F+A Y S+LDG EH+A+V
Sbjct: 181 VFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240
Query: 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 406
KG+IGDG+D+LVRVHSECLTGD+FGS RCDCG QL A+ QI GRGV++Y+RG EGRG
Sbjct: 241 KGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRG 300
Query: 407 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQ 446
IGL HKLRAY LQD+G+DTV+AN +LG P D+R+YGIGAQ
Sbjct: 301 IGLLHKLRAYQLQDEGYDTVDANLKLGFPADARDYGIGAQ 340
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 494 bits (1275), Expect = e-172
Identities = 200/346 (57%), Positives = 254/346 (73%), Gaps = 11/346 (3%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F SI +A+ IR G+ V+VVDDE+RENEGDLI AA TPE + F+ G++C++M G
Sbjct: 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTG 64
Query: 168 EDLERLELPLMV--NHKDNEEKLCTAFTVSVDA--KYGTTTGVSANDRAKTVLALACRDS 223
E L+ L+LPLMV N N+ TAFTVS+DA + G +TG+SA DRA+T+ D+
Sbjct: 65 ERLDELDLPLMVDRNTDSNQ----TAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDT 120
Query: 224 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLP 283
KPED RPGHIFPL+ +EGGVLKRAGHTEA+VDLA LAGL P V+CEI + DGSMARLP
Sbjct: 121 KPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLP 180
Query: 284 KLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHI 343
+L+++A+ LK+ISIADLI YR + +R V A A +P+ +G F+A+ YR+ LDG EH+
Sbjct: 181 ELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHV 240
Query: 344 AMVKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRG 401
A+VKG+ + + +LVR+HSECLTGD FGS RCDC QL A+K IE G GV+VYLR
Sbjct: 241 ALVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR- 299
Query: 402 HEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQL 447
EGRGIGL +KL+AY+LQD G DTVEANE LG P D R YG+GAQ+
Sbjct: 300 QEGRGIGLINKLKAYSLQDGGLDTVEANERLGFPADLRNYGVGAQI 345
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 365 bits (940), Expect = e-124
Identities = 163/339 (48%), Positives = 206/339 (60%), Gaps = 12/339 (3%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
ASI E I DIR G++VI+VD+EDRENEGDL+MAA VTPEA+ F+ +HG G++C+++ E
Sbjct: 4 ASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEE 63
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDF 228
E+L LPLM N + T FTVS++A G TTG+SA DRA+T+ A RD+KPED
Sbjct: 64 RCEQLGLPLMT--YRNGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDI 121
Query: 229 NRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQF 288
+PGHIFPL + GGVL RAGHTEA DLA LAGL P AV+CEI+ DDG+MARLP L +F
Sbjct: 122 VQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEF 181
Query: 289 AQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKG 348
A+ LKI +IADLI YR + + +VE A P+ T G F+ YR G H+A+VKG
Sbjct: 182 AKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKG 241
Query: 349 EIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIG 408
I ++ LVRVH D+ + L AM I AG GV+V
Sbjct: 242 TICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVL---------- 291
Query: 409 LGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQL 447
L +L D A PVD R YGIGAQ+
Sbjct: 292 LNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQI 330
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 317 bits (815), Expect = e-108
Identities = 121/196 (61%), Positives = 153/196 (78%), Gaps = 3/196 (1%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
I EAIE ++ GK VIVVDDEDRENEGDL++AA VTPE++ F++RH G++CV++ E
Sbjct: 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERA 60
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR 230
+RL LP MV N ++ TAFTVSVDAK GTTTG+SA DRA T+ ALA ++ PEDF R
Sbjct: 61 DRLGLPPMV--DRNTDRFGTAFTVSVDAK-GTTTGISAADRALTIRALADPNAFPEDFVR 117
Query: 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQ 290
PGH+FPL+ +EGGVL+R GHTEA+VDLA LAGL P AV+CEI++DDG+MARLP L +FA+
Sbjct: 118 PGHVFPLRAKEGGVLERRGHTEAAVDLARLAGLTPAAVICEILNDDGTMARLPDLEEFAK 177
Query: 291 TENLKIISIADLIRYR 306
L +I+I DLI YR
Sbjct: 178 EHGLPLITIEDLIEYR 193
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 308 bits (791), Expect = e-104
Identities = 122/204 (59%), Positives = 156/204 (76%), Gaps = 3/204 (1%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EAIE +R GK VIVVDDEDRENEGDLI AA VTPE +AF+ RH +G++CV++
Sbjct: 3 FERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTE 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +RL LP MV +N + TAFTVSVDA+ TTTG+SA DRA T+ ALA +KP D
Sbjct: 63 ERAKRLGLPPMV--DNNTDAHGTAFTVSVDAR-ETTTGISAADRALTIRALADPGAKPSD 119
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
F RPGH+FPL+ ++GGVL+R GHTEA+VDLA LAGL+P V+CEI++DDG+MARLP+L +
Sbjct: 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEE 179
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
FA+ L +I+I DLI YR+K +R
Sbjct: 180 FAKEHGLPVITIEDLIEYRKKHER 203
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 282 bits (723), Expect = 3e-92
Identities = 149/348 (42%), Positives = 197/348 (56%), Gaps = 55/348 (15%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
+ EAIEDI+ GK++I+VDDEDRENEGDL+ AA TPE + F+ H G++CVS+
Sbjct: 3 IKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTK 62
Query: 168 EDLERLELPLMV-NHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPE 226
E ++LELP MV + N E TAFTVS+DAK TTG+SA +R T+ LA SKP
Sbjct: 63 ELAKKLELPPMVSKNTSNHE---TAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPS 118
Query: 227 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLR 286
DF RPGHIFPL ++GGVL R GHTE SVDL LAGL+PVAV+CEI+ +DG+MAR L
Sbjct: 119 DFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLE 178
Query: 287 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLD--GIEHIA 344
FA+ NLK+I ++DL+ YR K + L++ FKA Y + LD EHIA
Sbjct: 179 DFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFA--GFKAEKY-TFLDHLQNEHIA 235
Query: 345 MVKGEIGDGQDILVRVHS-----ECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYL 399
GEI V+ H E LT D F ++L A++ ++ G GVL++L
Sbjct: 236 FKFGEIKLTP--NVKFHKIGSDFELLTSDKF--------SELLKAIEYLKKNG-GVLIFL 284
Query: 400 RGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQL 447
+ E N+ ++YGIGAQ+
Sbjct: 285 NTE----------------------SKENNQV-------KDYGIGAQI 303
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 269 bits (689), Expect = 8e-87
Identities = 137/297 (46%), Positives = 186/297 (62%), Gaps = 3/297 (1%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F +I E IED RQGK+V++VDDEDRENEGDL++AA +A+ F+ R G++C+++
Sbjct: 3 FNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTD 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +RL L MV N TAFTVS++A G TTG+SA DRA+TV A +++PED
Sbjct: 63 EHCQRLGLEQMV--PSNGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPED 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
+PGHIFPL+ REGGVL RAGHTEA DLA LAG P +V+ E+++DDG+MAR P L
Sbjct: 121 LVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEV 180
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
FA +KI +IADLI YR + ++ +PT+ G F+ Y ++G H+AMV
Sbjct: 181 FAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVM 240
Query: 348 GEIGDGQDILVRVHSECLTGDIFGSARCDCGN-QLALAMKQIEAAGRGVLVYLRGHE 403
G+I Q LVRVH D+ G+ N L A++++ G GV+V L HE
Sbjct: 241 GDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE 297
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 267 bits (685), Expect = 5e-86
Identities = 138/340 (40%), Positives = 205/340 (60%), Gaps = 25/340 (7%)
Query: 115 IEDIRQ----GKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED- 169
+E++R+ GK VI++D RENE D + A ++T E + F + +G G++C++ ED
Sbjct: 1 MEELREAFLEGKPVILIDRN-RENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFN 229
L+R L N + T F + VD YGT TG+SA++RA T LA +F
Sbjct: 60 LKRGFFKLPSNGGE------TNFFIPVD--YGTGTGISASERALTCRKLA-EGLYVHEFR 110
Query: 230 RPGHIFPLKYREGGVL--KRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
PGH+ L GG+ +R GHTEAS++L+ L G + AV+ EI+D+ G L + +
Sbjct: 111 YPGHVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLK 166
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
A+ +L ++ I D+ + +R +L+++ A A +PT +G F+ + + LDG EH+A+VK
Sbjct: 167 LAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVK 226
Query: 348 GEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGI 407
+G+ LVR+HSEC+TGD S RCDCG+QLA ++ I G G+L+YLR EGRGI
Sbjct: 227 EPLGE--VPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGI 282
Query: 408 GLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQL 447
GL +K++AY LQD G DTVEAN LG D R+Y Q+
Sbjct: 283 GLSNKIKAYELQDKGLDTVEANRALGFKEDERDYAAAFQI 322
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 257 bits (658), Expect = 2e-84
Identities = 104/199 (52%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EA+E +++G++V+V DDEDRENEGDLI+AA +TPE +AF+ RH G++CV++
Sbjct: 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITP 61
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP MV+ + + FT++V + T TG+SANDRA T+ A KP D
Sbjct: 62 DIADKLDLPPMVDINTSASGTASTFTITVAHR-KTFTGISANDRALTIRAALADVVKPSD 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
F RPGH+FPL+ +GGVL R GHTEASVDLA LAGL+P V+CE+++DDG+MAR P+L +
Sbjct: 121 FRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELME 180
Query: 288 FAQTENLKIISIADLIRYR 306
+A+ NLK+ISI DLI YR
Sbjct: 181 YAKKHNLKLISIEDLIEYR 199
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 254 bits (652), Expect = 3e-83
Identities = 102/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A++ +R+G+ V+V+DDEDRENEGD+I AA +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E ++L+LP+MV ++N + TAFTV+++A G TTGVSA DR T+ A +KP D
Sbjct: 73 ERRKQLDLPMMV--ENNTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAGL+P VLCE+ +DDG+MAR P+
Sbjct: 131 LNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIA 190
Query: 288 FAQTENLKIISIADLIRYRRKRDRLVE 314
FA+ N+ +++I DL+ YR+ +R
Sbjct: 191 FAKQHNMPVLTIEDLVAYRQAHERKAS 217
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP
cyclohydrolase II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the
precursor molecule for the synthesis of the coenzymes
flavin mononucleotide (FMN) and flavin adenine
dinucleotide (FAD) which are essential to cell
metabolism. The enzyme is present in plants and numerous
pathogenic bacteria, especially gram negative organisms,
who are dependent on endogenous synthesis of the vitamin
because they lack an appropriate uptake system. For
animals and humans, which lack this biosynthetic
pathway, riboflavin is the essential vitamin B2. GTP
cyclohydrolase II requires magnesium ions for activity
and has a bound catalytic zinc. The functionally active
form is thought to be a homodimer. A paralogous protein
is encoded in the genome of Streptomyces coelicolor,
which converts GTP to
2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate (FAPy), an activity that has otherwise been
reported for unrelated GTP cyclohydrolases III.
Length = 193
Score = 236 bits (605), Expect = 1e-76
Identities = 83/135 (61%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFG 371
LVE A AP+PT +G F+ + DG EH+A+VKG+ DG+ +LVRVHSECLTGD+FG
Sbjct: 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFG 60
Query: 372 SARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEE 431
S RCDCG QL A+++I G GVL+YLR EGRGIGL +KLRAY LQD G DTVEANE
Sbjct: 61 SLRCDCGPQLEEALEEIAEEGGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEA 119
Query: 432 LGLPVDSREYGIGAQ 446
LG P D+R+YG+ AQ
Sbjct: 120 LGFPADARDYGLAAQ 134
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 233 bits (595), Expect = 8e-75
Identities = 100/197 (50%), Positives = 138/197 (70%), Gaps = 2/197 (1%)
Query: 114 AIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERL 173
AI +QG V+V+DDEDRENEGDLI A +TPE MA ++R+G+GIVC+ + E ++L
Sbjct: 19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQL 78
Query: 174 ELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH 233
+LP MV H + K TAFTV+++A G +TGVSA DR T+ A ++KP D +RPGH
Sbjct: 79 DLPPMVQHNTSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGH 136
Query: 234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN 293
+FPL+ GGVL R GHTEA+VDLA LAG + V+CEI +DDG+MAR P++ +FA+
Sbjct: 137 VFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFG 196
Query: 294 LKIISIADLIRYRRKRD 310
+++I DL+ YR K +
Sbjct: 197 YAVVTIEDLVEYRLKYN 213
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP
cyclohydrolase II catalyzes the first committed step in
the biosynthesis of riboflavin.
Length = 169
Score = 220 bits (564), Expect = 9e-71
Identities = 86/134 (64%), Positives = 102/134 (76%), Gaps = 1/134 (0%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
VE A AP+PT +G F+ YR L+DG EH+A+VKG+I + +LVRVHSECLTGD+FGS
Sbjct: 1 VERVAEAPLPTRFGEFRLVAYRDLVDGKEHLALVKGDISPDEPVLVRVHSECLTGDVFGS 60
Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
RCDCG QL A+++I GRGVLVYLR EGRGIGL +KL+AY LQD G DTVEAN L
Sbjct: 61 LRCDCGEQLEKALRRIAEEGRGVLVYLR-QEGRGIGLLNKLKAYALQDQGLDTVEANLAL 119
Query: 433 GLPVDSREYGIGAQ 446
G P D R+YGIGAQ
Sbjct: 120 GFPDDLRDYGIGAQ 133
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 205 bits (524), Expect = 2e-64
Identities = 71/134 (52%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
++ A A +PT WG F + L G EH+A+V G+I + +LVRVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFS 62
Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
RCDCG QL A+++I GRG+L+YLR EGRGIGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALERIAEEGRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQL 121
Query: 433 GLPVDSREYGIGAQ 446
G D R+Y + A
Sbjct: 122 GFAADERDYTLAAD 135
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 205 bits (523), Expect = 5e-64
Identities = 93/200 (46%), Positives = 137/200 (68%), Gaps = 2/200 (1%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
+ A++ +R+G+ V+++DDEDRENEGD+I + +T MA ++R +GIVC+ +
Sbjct: 17 VENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQA 76
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR 230
++LELP MV +N TAFTVS++AK+G TTGVSA DR T+ A +KPED R
Sbjct: 77 DKLELPPMV--VNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLAR 134
Query: 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQ 290
PGH+FPL+ R GGVL R GHTE +VDL +AGL+P VLCE+ + DG+MA+ P++ F +
Sbjct: 135 PGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGK 194
Query: 291 TENLKIISIADLIRYRRKRD 310
N+ +++I D++ YR + D
Sbjct: 195 LHNMPVLTIEDMVMYRNQFD 214
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism].
Length = 193
Score = 201 bits (513), Expect = 8e-63
Identities = 82/135 (60%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFG 371
LVE A A +PT G F+ YR +DG EH+A+VKG+I + +LVRVHSECLTGD+ G
Sbjct: 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLG 60
Query: 372 SARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEE 431
S RCDCG QL A+++I G GV+VYLR EGRGIGL +K+RAY LQD G DTVEAN
Sbjct: 61 SLRCDCGEQLEAALRRIAEEGSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLA 119
Query: 432 LGLPVDSREYGIGAQ 446
LG P D R+YGIGAQ
Sbjct: 120 LGFPADERDYGIGAQ 134
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 201 bits (511), Expect = 4e-62
Identities = 99/212 (46%), Positives = 136/212 (64%), Gaps = 7/212 (3%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
+ A++ +R G+ VI++DD DRENE DLI+AA +T MA ++R G+GIVC+ + GE
Sbjct: 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGE 78
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDF 228
L+RLELP MV+ N + TAFTVS++A+ G TTGVSA DR T+ A ++ D
Sbjct: 79 TLDRLELPPMVDS--NRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDV 136
Query: 229 NRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQF 288
PGH+FPL+ + GGVL R GHTE SVDLA LAGL P VLCE+++ DG+M R L ++
Sbjct: 137 VSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERY 196
Query: 289 AQTENLKIISIADLIRYRRKRDRLVELAAAAP 320
A E L ++I +L + + R A AP
Sbjct: 197 AAKEGLVALAIDELAAHLQAR-----GATGAP 223
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II. Several members of the
family are bifunctional, involving both ribA and ribB
function. In these cases, ribA tends to be on the
C-terminal end of the protein and ribB tends to be on
the N-terminal. The function of archaeal members of the
family has not been demonstrated and is assigned
tentatively [Biosynthesis of cofactors, prosthetic
groups, and carriers, Riboflavin, FMN, and FAD].
Length = 191
Score = 186 bits (475), Expect = 3e-57
Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 314 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSA 373
E A A +PT +G F + G +H+A+VKG+I D+LVR+HSECLTGD S
Sbjct: 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSL 60
Query: 374 RCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELG 433
RCDCG QL A+KQI GRGVL+YLR EGRGIGL +KLRAY LQD G+DTV+AN LG
Sbjct: 61 RCDCGFQLEAALKQIAEEGRGVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLG 119
Query: 434 LPVDSREYGIGAQL 447
P D R++ + A +
Sbjct: 120 FPADERDFSLCADI 133
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional.
Length = 375
Score = 114 bits (286), Expect = 5e-28
Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 14/197 (7%)
Query: 253 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD-R 311
+V++A LA L P V + D A + +++ADL
Sbjct: 123 GAVEIARLALLLPAMVAVPLPVHDE-----------AAFAGCQALALADLDAGCATSAAA 171
Query: 312 LVELAAAAPIPTM-WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIF 370
EL P+P G + +R + + +A+V G+ + VRVHS CLTGD+F
Sbjct: 172 GYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTGDLF 231
Query: 371 GSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANE 430
GS +CDCG+QL + +++ G GVL+YL EGRG G+ K+RAY Q G DT++A+
Sbjct: 232 GSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRGNGIAAKMRAYGYQHAGLDTIDADA 290
Query: 431 ELGLPVDSREYGIGAQL 447
+LG D R YG +
Sbjct: 291 QLGFGPDERRYGSAVAM 307
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 93.2 bits (232), Expect = 7e-22
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
EA + + G V++ D + RE E D++ A VT +++ + ++ G++C + +
Sbjct: 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSE 61
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYG-------------TTTGVSANDRAKT-- 214
+ L L + E YG T TG+S DRA T
Sbjct: 62 GKTLGLNFLAEILKRHELYRKLVK---KPSYGDEPAFSLWVNHVKTKTGISDYDRALTIR 118
Query: 215 ----VLALACRDSKP------EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264
V+ LA + + E+F PGH+ L R G+ +R GHTE S+ LA AGLE
Sbjct: 119 ELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLE 176
Query: 265 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 298
P AV+ E++D+ S+ K ++ A+ ++
Sbjct: 177 PSAVIAEMLDEKLSL-SKEKAKKIAKNLGFPLVE 209
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated.
Length = 418
Score = 45.4 bits (108), Expect = 4e-05
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 356 ILVRVHSECLTGDIFGSARCDCGNQLALAMKQ-IEAA---GRGVLVYLRGHEGRGIGLGH 411
+ RVH EC D+FGS C C L +++ I A G G++VY R EGR +G
Sbjct: 240 LTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KEGRALGEVT 298
Query: 412 KLRAYN 417
K YN
Sbjct: 299 KFLVYN 304
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 32.3 bits (74), Expect = 0.46
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 132 RENEGDLIMAASLVTPEAMAFIVRHGTGI 160
RE E + +M SL T E M+ +V TG+
Sbjct: 93 REGEAEALMKGSLHTDELMSAVVARDTGL 121
>gnl|CDD|214861 smart00857, Resolvase, Resolvase, N terminal domain. The
N-terminal domain of the resolvase family contains the
active site and the dimer interface. The extended arm at
the C-terminus of this domain connects to the C-terminal
helix-turn-helix domain of resolvase.
Length = 148
Score = 30.3 bits (69), Expect = 1.0
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 99 FDLDRPTKGFASISEAIEDIRQGKL-VIVVDDEDR--ENEGDLIMAASLVTPEAMAFIVR 155
DRP G + D+R G + V+VV DR + DL+ + +
Sbjct: 47 KKADRP--GLQ---RLLADLRAGDIDVLVVYKLDRLGRSLRDLL--------ALLELLEE 93
Query: 156 HGTGIVCVSMKGEDLERLELPLMVN 180
G +V + D L+++
Sbjct: 94 KGVRLVSLKEGILDTSTPAGRLLLD 118
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 31.2 bits (71), Expect = 1.3
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 62 NNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGF 108
+ K T IE + TIGFG+ T D++ L + G+
Sbjct: 230 SKDKPTLIEVTT-TIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGW 275
>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of the
type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina.
CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of
the type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina. CTLD refers
to a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. The CEL-1 CTLD
binds three calcium ions and has a high specificity for
N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong
cytotoxicity which is inhibited by GalNAc. This protein
may play a role as a toxin defending against predation.
Echinoidin is found in the coelomic fluid of the sea
urchin and is specific for GalBeta1-3GalNAc. Echinoidin
has a cell adhesive activity towards human cancer cells
which is not mediated through the CTLD. Both CEL-1 and
Echinoidin are multimeric proteins comprised of multiple
dimers linked by disulfide bonds.
Length = 137
Score = 29.2 bits (66), Expect = 2.3
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 322 PTMWGPFKAHCYRSLLDGIEHIAM--------VKGEIGDGQDILVRVHSE 363
PT W F +CYR D + + G I LV +HS+
Sbjct: 2 PTFWTAFGGYCYRFFGDRLTWEEAELRCRSFSIPGLIAH----LVSIHSQ 47
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 29.8 bits (68), Expect = 2.5
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 386 KQIEAAGRGVLVYLRGHEGRGIGL-GHKLRAYNLQDD--GHDTVEANEELGLPV 436
K + G L YL +GI L G Y++ D H E LG+ V
Sbjct: 162 KDLRKKGEEALAYLEEEGKKGIVLLGR---PYHIYDPEINHGIPEKLTSLGIAV 212
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 29.6 bits (67), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 264 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 302
E L + +++ M R LRQF + + L+ I+ ADL
Sbjct: 46 ELREALARVPEEEQLMDR---LRQFKRRQLLR-IAAADL 80
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 28.3 bits (63), Expect = 7.1
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 148 EAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVS 207
M + V +V +S+ G L V N+ F VS + T+G
Sbjct: 89 AGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTG--ALFVVSAGNEGHGTSGSP 146
Query: 208 ANDRAKTVLALACRDSKPED 227
+ A L++ D ED
Sbjct: 147 GSAYA--ALSVGAVDRDDED 164
>gnl|CDD|221597 pfam12483, GIDE, E3 Ubiquitin ligase. This domain family is found
in bacteria, archaea and eukaryotes, and is typically
between 150 and 163 amino acids in length. There is a
single completely conserved residue E that may be
functionally important. GIDE is an E3 ubiquitin ligase
which is involved in inducing apoptosis.
Length = 154
Score = 27.7 bits (62), Expect = 8.6
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 148 EAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTG-- 205
+ F +R GTG V V M D E+ L+ E + F++ G T
Sbjct: 26 REVPFYLRDGTGRVLVVM---DPSGAEIELVTVLDRFEPSEGSLFSLLFGFFSGDVTLGY 82
Query: 206 -----VSANDRAKTVLALACRD 222
V TV+ A RD
Sbjct: 83 RYIERVLPVGTRLTVVGEAVRD 104
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding
proteins, family 3.
Length = 220
Score = 28.0 bits (63), Expect = 9.5
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 106 KGFASISEAIEDIRQGKLVIVVDDE-------DRENEGDLIMAASLVTPEAMAFIVRHG 157
+ ++EA++ + G++ VV D + +L++ ++ E VR G
Sbjct: 131 VLYDDLAEALQALAAGRVDAVVADSPVLAYLIKKNPGLNLVVVDEPLSGEPYGIAVRKG 189
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 202
Score = 27.7 bits (62), Expect = 9.8
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 255 VDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY--------- 305
++ A G + V + + + +L+ + L+I S+ +
Sbjct: 1 LEAAAELGFDGVELFFDYPRPASDKEEIEELKALLKEYGLEISSLNPSLGLLEPDEHERA 60
Query: 306 --RRKRDRLVELAAAAPIPTM--------WGPFKAHCYRSLLDGIEHIA 344
R +ELAAA + G + L + + +A
Sbjct: 61 AALEALKRAIELAAALGAKVVVVHPGSAPAGKDREEALDRLAESLNELA 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,329,704
Number of extensions: 2359430
Number of successful extensions: 2259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2219
Number of HSP's successfully gapped: 48
Length of query: 449
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 349
Effective length of database: 6,502,202
Effective search space: 2269268498
Effective search space used: 2269268498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)