RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013104
(449 letters)
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 240 bits (614), Expect = 2e-78
Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 2/203 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP+MV + + T FTV+++A G TTGVSA DR TV A +KP D
Sbjct: 69 DRRKQLDLPMMVENNTS--AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE+ +DDG+MAR P+ +
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186
Query: 288 FAQTENLKIISIADLIRYRRKRD 310
FA N+ +++I DL+ YR+ +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 241 bits (615), Expect = 2e-78
Identities = 62/218 (28%), Positives = 120/218 (55%), Gaps = 23/218 (10%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 2 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61
Query: 170 LERLELPLMVNH----------------KDNEEKLCTAFTVSVDAKYGTTTGVSANDRAK 213
+L +P MV+ D ++F+++++ + T TG++ NDRA
Sbjct: 62 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAF 120
Query: 214 TVLALA------CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 267
T+ LA + ++F PG + L+ EG V R GHTE +V LA LA L P+
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180
Query: 268 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 305
+CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 181 TICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 232 bits (594), Expect = 2e-75
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F +I + I+ + G+ V+V+DD RENE DLI+AA VT E MAF+VRH +G++C +
Sbjct: 1 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTP 60
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E L+LP MV H + +V + TTTG+SA+DRA LA D++P
Sbjct: 61 ERTTALDLPQMVTHNADPRGTAYTVSVDAEHP-STTTGISAHDRALACRMLAAPDAQPSH 119
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDG---------- 277
F RPGH+FPL+ GGV R GHTEA V+L LAG PVAV+ EIVDD
Sbjct: 120 FRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAA 179
Query: 278 -SMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 313
M R + FA+ LK+ +I D+I + K + +
Sbjct: 180 PGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKL 216
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 231 bits (590), Expect = 6e-75
Identities = 103/202 (50%), Positives = 139/202 (68%), Gaps = 3/202 (1%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F I EA+E + G+ +IV+DDEDRENEGDLIMAA L+T E MAF+VR+ +G VCV +
Sbjct: 3 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSE 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +LELP M+ ++ + TA+T++ D GTTTG+SA+DRA T +LA +SKP+D
Sbjct: 63 ERANQLELPPMLANRSDRH--GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQD 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLR 286
F +PGHI PL+ G + KR GHTEA+V L+ LAGL+P V+CE+V D+DG M RL
Sbjct: 121 FIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCI 180
Query: 287 QFAQTENLKIISIADLIRYRRK 308
QF + +KII+I L+ Y K
Sbjct: 181 QFGKKHGIKIININQLVEYISK 202
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 132 bits (332), Expect = 3e-37
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
++ A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 433 GLPVDSREYGIGAQL 447
G D R++ + A +
Sbjct: 122 GFAADERDFTLCADM 136
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
2336]}
Length = 224
Score = 31.2 bits (70), Expect = 0.18
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 81 LGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDI 118
LG EI+P T + FD D + + ++
Sbjct: 177 LGDEISPDTFRLRKKGEIFDKDVYRRDLGDPLKKYREV 214
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 31.3 bits (69), Expect = 0.22
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 137 DLIMAASLVTPEAMAFIVRHGTGI-VCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVS 195
D + +T EA ++ G G VC L+ ++ P + H +L
Sbjct: 6 DPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPI--HDFIHNQLPKFL--G 61
Query: 196 VDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGV 244
D T A LA ++ + +
Sbjct: 62 CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 27.0 bits (60), Expect = 0.66
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 97 DEFDLDRPTKGFASISEAIED-IRQGKLVIVVDDEDREN 134
+ D +G+ + SEAI D +R + + +++
Sbjct: 14 ETLDSLSQRRGYNNRSEAIRDILRSA----LAQEATQQH 48
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 29.3 bits (65), Expect = 0.88
Identities = 16/143 (11%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 40 NVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSD-------F 92
N R +G + I + + + A+ T +
Sbjct: 109 NQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVIN 168
Query: 93 FPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAF 152
+ D + ++ ++ V+D+D +N+ + + EA
Sbjct: 169 NGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKA 228
Query: 153 IVRH-GTGIVCVSMKGEDLERLE 174
+ G V++ ++++ +E
Sbjct: 229 LQEDVKDGEKPVNLSKDEIKAIE 251
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus, DNA polymerase IV [TaxId: 2287]}
Length = 240
Score = 28.0 bits (61), Expect = 2.3
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIV 154
+A + E + +GK V+V R + + A+ EA F V
Sbjct: 12 YAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATAN---YEARKFGV 55
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri
[TaxId: 623]}
Length = 112
Score = 26.7 bits (59), Expect = 2.9
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 115 IEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVS 164
+ + + K+ + + D+ + D++ A A+ + G G + V+
Sbjct: 53 VNFLPKVKIDVAIADDQLDEVIDIVSKA--------AYTGKIGDGKIFVA 94
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR,
N-terminal domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 50
Score = 24.6 bits (54), Expect = 4.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 97 DEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEG 136
++FD G+ + SEAI D+ + ++ G
Sbjct: 16 EKFDQIIEEIGYENRSEAIRDLIRDFII-----RHEWEVG 50
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 26.4 bits (58), Expect = 4.9
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 77 GFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEG 136
G L T ++ P++ + +S++ ++ + G+ VDD
Sbjct: 39 NLGDLLGTSTNTLANNLPDNWKEVYSDAMNSSSSVTPSVNSMM-GQFNAEVDDMTPSEAI 97
Query: 137 DLIMAASLVTP 147
+
Sbjct: 98 AYMNKKLAEKG 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,665,539
Number of extensions: 80107
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 19
Length of query: 449
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,199,356
Effective search space: 432967516
Effective search space used: 432967516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)