BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013106
         (449 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96MW5|COG8_HUMAN Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens
           GN=COG8 PE=1 SV=2
          Length = 612

 Score =  277 bits (709), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 217/381 (56%), Gaps = 14/381 (3%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           MN + L  H+ +L++LEIPQLMDTCVRN  Y+EAL+L AYV +L   +  +P+IQ +  E
Sbjct: 141 MNSLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNE 200

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V+Q+ Q +LSQL+Q+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL  IL 
Sbjct: 201 VRQSMQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILT 260

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD------TSGSEENYDGGLLFSWAM 174
            +   + Y ++   I   R+HLFD++ QYRAIF+D+        G     +  +   W +
Sbjct: 261 AIPNDDPYFHITKTIEASRVHLFDIITQYRAIFSDEDPLLPPAMGEHTVNESAIFHGWVL 320

Query: 175 HQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF 234
            +++  L+ L+  L +   G  L ++L QCMY  +    VG DFRG L P+F+   +  F
Sbjct: 321 QKVSQFLQVLETDLYRGIGG-HLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTF 379

Query: 235 LKNMSTAVENFQLVLDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVF 290
            K +   VE FQ  ++S+  +  PA+      PA +V       + PP  L++ PPLA F
Sbjct: 380 QKAIQETVEKFQEEMNSYMLISAPAILGTSNMPA-AVPATQPGTLQPPMVLLDFPPLACF 438

Query: 291 INGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSL 348
           +N +  A N+LR C P++L   +   L   L  V+  +L +           E  LF+  
Sbjct: 439 LNNILVAFNDLRLCCPVALAQDVTGALEDALAKVTKIILAFHRAEEAAFSSGEQELFVQF 498

Query: 349 CRAFIEVAYPHCATCFGRCYP 369
           C  F+E   P+   C    +P
Sbjct: 499 CTVFLEDLVPYLNRCLQVLFP 519


>sp|Q2TBH9|COG8_BOVIN Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus GN=COG8
           PE=2 SV=1
          Length = 626

 Score =  276 bits (705), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 218/380 (57%), Gaps = 12/380 (3%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           MN + L  H+ +L++LEIPQLMDTCVRN  Y+EAL+L AYV +L   +  +P+IQ +  E
Sbjct: 147 MNTLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNE 206

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V+Q+ Q +LSQL+Q+LR+NIQLP CLR+IG+LR++ VF+E E+R++FL+ R+AWL  IL 
Sbjct: 207 VRQSMQLMLSQLIQQLRTNIQLPACLRVIGFLRQMDVFTEAELRVKFLQARDAWLRSILT 266

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD------TSGSEENYDGGLLFSWAM 174
            +   + Y ++   I   R+HLFD++ QYRAIF+D+        G     +  +   W +
Sbjct: 267 AIPNDDPYFHITKTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEHMVNESAIFHGWVL 326

Query: 175 HQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF 234
            +++  L+ L+  L +   G  L ++L QCMY  +    VG DFRG L P+F++  +  F
Sbjct: 327 QKVSQFLQVLETDLNRGI-GSRLDSLLGQCMYFGLSFSRVGADFRGQLVPVFQQVAISTF 385

Query: 235 LKNMSTAVENFQLVLDSHRWVPLPAV-GYPAHSVGEESQEDVT--PPSYLMEHPPLAVFI 291
            K +  AVE FQ  ++S+  +  PAV G  A        +  T  PP  L++ PPLA F+
Sbjct: 386 QKAIQEAVEKFQDEMNSYTLISTPAVLGSSALPAAAPVTQPGTLQPPMVLLDFPPLACFL 445

Query: 292 NGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSLC 349
           N +  A N+LR C P++L   +   L   L  V+  +L +           E  LF+  C
Sbjct: 446 NSILVAFNDLRLCCPVALAQEVTRALEDALDKVTKVILAFHRAEEAAFSSGEQELFVQFC 505

Query: 350 RAFIEVAYPHCATCFGRCYP 369
             F+E   P+   C    +P
Sbjct: 506 TVFLEDLVPYLNRCLQVLFP 525


>sp|Q9JJA2|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus
           GN=Cog8 PE=2 SV=3
          Length = 640

 Score =  276 bits (705), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 220/381 (57%), Gaps = 14/381 (3%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           MN + L  H+ +L++LEIPQLMDTCVRN  ++EAL+L AYV +L   +  +P+IQ +  E
Sbjct: 147 MNTLTLNRHTEILEILEIPQLMDTCVRNSYHEEALELAAYVRRLERKYSSIPVIQGIVNE 206

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V+Q+ Q +LSQL+Q+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL  IL 
Sbjct: 207 VRQSMQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILT 266

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD------TSGSEENYDGGLLFSWAM 174
            +   + Y ++   I   R+HLFD++ QYRAIF+D+        G     +G +   W +
Sbjct: 267 AIPNDDPYFHITKTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEYTVNEGAIFHGWVL 326

Query: 175 HQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF 234
            +I+  L+ L+  L +   G  L ++L QCMY  +    VG DFRG L P+F+   +  F
Sbjct: 327 QKISQFLQVLETDLYRGIGG-RLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTF 385

Query: 235 LKNMSTAVENFQLVLDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVF 290
            K +  AVE FQ  + S+  +   A+      PA +V       + PP  L++ PPLA F
Sbjct: 386 QKAVEEAVEKFQDEMTSYTLISTAAILGSSNTPA-TVPATQPGTLQPPMVLLDFPPLACF 444

Query: 291 INGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSL 348
           +N +  A N+LR C P++L   +   L   L  V+ ++L +      +    E  +F+  
Sbjct: 445 LNNILVAFNDLRLCCPVALAQDVTGTLENALTKVTKTILAFHRAEEAVFSSGEHEIFVQF 504

Query: 349 CRAFIEVAYPHCATCFGRCYP 369
           C AF+E   P+   C    +P
Sbjct: 505 CTAFLEDLVPYLNRCLQVLFP 525


>sp|Q55BB8|COG8_DICDI Conserved oligomeric Golgi complex subunit 8 OS=Dictyostelium
           discoideum GN=cog8 PE=3 SV=1
          Length = 779

 Score =  226 bits (575), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 32/391 (8%)

Query: 5   LLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQT 64
           LL N STLLD+LEIPQLMDTC++N ++DEAL LE++  K+   +    +I  +  E+K  
Sbjct: 76  LLDNFSTLLDILEIPQLMDTCIKNNSFDEALQLESFAKKIYKQYSNNTVIIEIIKEIKVC 135

Query: 65  TQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE-DLD 123
           T+SL+S L Q+LR +I L  C++ IGYLRR+ ++ E E+++ FL  R+ WL   L+ D+ 
Sbjct: 136 TRSLISTLQQQLRQDITLTNCIKTIGYLRRLSIYKENELKIIFLHSRDQWLINSLKFDIT 195

Query: 124 QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKT 183
             N   YL  + +  R ++FD+V QY AIF+++ S  E+  D  +L++W   +I  ++  
Sbjct: 196 NSNHVTYLTKLTDSCRTNIFDIVTQYNAIFSNE-SNDEDQLDDLILYNWIQQKIKVYINI 254

Query: 184 LKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVE 243
           +   L  I  G S+S +L+  MY +M +  VG+DFR LL P+FE+ +L  FL  ++TA  
Sbjct: 255 VDSTLNHIKSGSSISYVLENSMYFSMSISRVGIDFRNLLEPIFEKHILNNFLSQITTANH 314

Query: 244 NFQLVLDSHRWVPLPA--------VGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVS 295
           +F   L ++++ PL              + S    S + ++PP  +++H PLAV +N + 
Sbjct: 315 HFLETLKTYKF-PLQKSTSPTSSTTSTSSSSSSSSSSQYISPPLSILQHQPLAVLVNLIL 373

Query: 296 AAMNELRPCAPLSLKHVLAEEL-------IKGLQAVSDSLLRYSTTRMLRENE------- 341
            + NEL+ C P+SL+ ++  +L       + G+ +  + LL  + + ++           
Sbjct: 374 KSFNELKDCFPISLRSIVILKLKELIISIVGGVTSFYNQLLSNTISNLINSPSTTTTTTT 433

Query: 342 -------SGLFLSLCRAFIEVAYPHCATCFG 365
                    +F S C+   E   P    CF 
Sbjct: 434 TTITSSFDKVFHSFCKCLAEDFIPFIVKCFD 464


>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila
           melanogaster GN=CG6488 PE=2 SV=1
          Length = 570

 Score =  221 bits (564), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 207/383 (54%), Gaps = 17/383 (4%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           +N + L  ++ LL++LE+PQLM+ C+R G Y+EAL+L AY  +L      +P++ ++   
Sbjct: 128 LNSITLQKNAQLLEVLELPQLMERCIREGRYEEALELAAYATRLGQHQGHIPVVTSIVRS 187

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V+    ++L QL+ +LR+++QLP+CL+I+GYLRR+  F + E+RL+FL+ R+AWLT  LE
Sbjct: 188 VEALWHNMLVQLVAQLRTDLQLPKCLQIVGYLRRMQAFGDNELRLKFLQARDAWLTSCLE 247

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENY----------DGGLLF 170
            +   +A ++L   I   R++LF+++ QYRAIF +D    +             +G  LF
Sbjct: 248 AIPTADAQQHLSKTIEITRINLFNIITQYRAIFPEDEGTLKTQSSLRPLQGVSCNGDRLF 307

Query: 171 -SWAMHQITAHLKTLKVMLPKITEGV-SLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEE 228
            +W  ++I+  L+TL+     +  GV S+  +L QCMY  +    VG DFR L+ P+F  
Sbjct: 308 QAWLHNKISDFLQTLE---RDLQLGVGSVETVLGQCMYFGLSFSRVGADFRALMAPIFVG 364

Query: 229 AVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLA 288
            + + F  ++    E F+  L+    +   A+   A    +  QE   PP  L++  PLA
Sbjct: 365 VIRRRFESSVEQVDEQFERELERFTLINKVALHSHARKQVDPEQESYAPPEALLDFYPLA 424

Query: 289 VFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRY--STTRMLRENESGLFL 346
              NG  +A+NELR CAPL+L   +   L   LQ  +  +L +     +    +E   F+
Sbjct: 425 ALCNGYLSALNELRLCAPLALATDVTRCLQHSLQQAAQRVLAFYRQEQQAFAGSEREAFV 484

Query: 347 SLCRAFIEVAYPHCATCFGRCYP 369
            LC        P+   C    +P
Sbjct: 485 RLCSCLAYDLVPYIQRCIHGVFP 507


>sp|O44502|COG8_CAEEL Conserved oligomeric Golgi complex subunit 8 OS=Caenorhabditis
           elegans GN=cogc-8 PE=3 SV=1
          Length = 743

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 22/312 (7%)

Query: 6   LANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAY--VCKLSTLHPKLPIIQALAAEVKQ 63
           L   + + +LL +P  MD C+R G YD A  L  Y    +  T   + P+I+ +A  + +
Sbjct: 106 LDKSNPIWELLTLPSRMDICIRAGYYDLAYTLTNYGLQLQQQTQLYRNPLIKKVADHLVE 165

Query: 64  TTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLD 123
               LL +L  K    + L E ++++  +R++   +  ++R+  L+ R+ +L   +  LD
Sbjct: 166 ARAYLLEELFNKFAGPLDLAESIKVVNNVRKMPSLTANQLRIAVLQHRDIYLEKQI--LD 223

Query: 124 QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAM---HQITAH 180
                + +   I  +R  ++D +  Y A+F ++    +         SW +   + I + 
Sbjct: 224 ISGNVDMIVQAIEIYRTSMYDTLVLYLAVFPENEVVRKNPNADPRWESWPVLPPNSILSQ 283

Query: 181 --LKTLKVMLPKITE-----GVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKL 233
             +  +K ML  IT+      V LS +  + M  A   G +G+DFR L+     + + + 
Sbjct: 284 WVISNVKKMLDLITKADVKSAVDLSAVWTKLMAMASSFGRMGIDFRPLIAGKLTKLIEQR 343

Query: 234 FLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLME---HPPLAVF 290
           F +N+  A      +  S R + +  +  PA     E+  D +PP    E      + ++
Sbjct: 344 FRQNVQEATSR---LTGSSRDIVMIGID-PASLPQFETAPD-SPPVAAAELSLWDDMTIY 398

Query: 291 INGVSAAMNELR 302
            N V  A+N LR
Sbjct: 399 TNSVVDALNGLR 410


>sp|Q96WW5|COG8_SCHPO Conserved oligomeric Golgi complex subunit 8 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=cog8 PE=3 SV=2
          Length = 378

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 30/236 (12%)

Query: 12  LLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQ 71
           L  +LE+P+LM+ C+    + E L+ +A   +L        IIQ L  +V+     L  +
Sbjct: 117 LSSILELPELMNACIERNYFSETLEFQALAYRLKDRFGTNSIIQELITQVETLVVKLTEK 176

Query: 72  LLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFL----RCREAWLTGILEDLDQKNA 127
           L+ +L+  ++L   ++++ YLR     SE +++  FL    +  +  L  ++  LD  N 
Sbjct: 177 LILQLQKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYFSWKQLQTSLRNLVPLLDYNNP 236

Query: 128 YEYLKGMINCHRMHLFDVVNQYRAIFAD------------------DTSGSEENYDGGLL 169
             YL+  I   R   F ++ QY+++F +                   TS S    D    
Sbjct: 237 ELYLRRYIQVIRDRAFSLLFQYQSVFGESSNDRLNAAGTVDIPNSTSTSASPFEMDPEGF 296

Query: 170 FSWAMHQITAHLKTLKV--------MLPKITEGVSLSNILDQCMYCAMGLGWVGLD 217
            ++  + +++ ++ L++         +P + +  S  ++L Q  YC   L  VG D
Sbjct: 297 NNFGQNILSSFVRKLQLEICYVLQKFMPNVKDSTSKFSLLLQLYYCNQSLTKVGTD 352


>sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex subunit 8 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=COG8 PE=1
           SV=1
          Length = 607

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 5   LLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV-KQ 63
           +L N  ++ DL+E+P L  TC+R G+Y EA+ L  +   L +  P   I+  +  +V  +
Sbjct: 190 VLENLDSITDLMELPFLARTCIRTGHYQEAVMLYTHTTSLRSRFPGSTIVDEVCEKVLNE 249

Query: 64  TTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVF---SEYEMRLQFLRCREAWLTGILE 120
            + ++LS L++ L +N+ +    +I+ YL  I  F   +   +   FL  R  ++T  + 
Sbjct: 250 ISTTMLSGLVKLLSTNVSVNSLKKILQYLNSIPPFDGKTNKSLLSVFLAMRYKFITDEIA 309

Query: 121 D--LDQKNAYEYL-----KGMINCHRMHLFDVVNQYRAIFADDTSGSE 161
              LD +++ E L     K  I   R H++  +N +   F  DT+  E
Sbjct: 310 SYPLDVESSNESLIEMMVKRKIEVLREHVYMSLNVFLKSFLYDTNDLE 357


>sp|Q6V595|KLHL6_MOUSE Kelch-like protein 6 OS=Mus musculus GN=Klhl6 PE=2 SV=2
          Length = 619

 Score = 32.3 bits (72), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 135 INCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLF----SWAMHQITAHLKTLKVMLPK 190
            +CHR+ L    N +RA+F +D    +E Y+  ++     +  MH +  +  T K ++ K
Sbjct: 81  FSCHRVVLAAASNYFRAMFCNDL---KEKYEKRIIIKGVDAETMHTLLVYTYTSKALITK 137

Query: 191 -----ITEGVSLSNILDQCMYCAMGL--GWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVE 243
                + E  +L   L     CA  L       +  G+L      ++  L ++  S  ++
Sbjct: 138 QNVQRVLEAANLFQFLQLVDACASFLTEALNPENCIGILRLADTHSLDSLKMQVQSYIIQ 197

Query: 244 NFQLVLDSHRWVPLPA 259
           NF  +L+S  ++ LP 
Sbjct: 198 NFVQILNSEEFLELPV 213


>sp|Q3UVL4|VPS51_MOUSE Vacuolar protein sorting-associated protein 51 homolog OS=Mus
           musculus GN=Vps51 PE=2 SV=2
          Length = 782

 Score = 32.0 bits (71), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 15  LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQ 74
           L E+P  +  CV  G Y +A+  +     +   +  LP  +A+  + +  T  L  QL Q
Sbjct: 180 LFELPSRLTKCVELGAYGQAVRYQGRARAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQ 239

Query: 75  KLR 77
           + R
Sbjct: 240 RFR 242


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,844,646
Number of Sequences: 539616
Number of extensions: 7255282
Number of successful extensions: 17668
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17642
Number of HSP's gapped (non-prelim): 16
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)