BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013107
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G04|A Chain A, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
Length = 216
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 84 YEQTLGRAPPYLIYTDHDKKEIV--------------LAIRGLNLAKESDYKLL-LDNRL 128
Y+Q G+AP LIY D V LAIRGL E+DY D+ L
Sbjct: 37 YQQLPGKAPKLLIYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSL 96
Query: 129 GRQMFDGG 136
Q+F GG
Sbjct: 97 DSQLFGGG 104
>pdb|2XWT|B Chain B, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 214
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 84 YEQTLGRAPPYLIYTDHDKKEIV--------------LAIRGLNLAKESDYKL-LLDNRL 128
Y+Q G AP LIY ++ + + L I GL E+DY D+RL
Sbjct: 37 YQQFPGTAPKLLIYDNNKRPSAIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSRL 96
Query: 129 GRQMFDGG 136
G +F GG
Sbjct: 97 GIAVFGGG 104
>pdb|2F5U|A Chain A, Structural Characterization Of The Ul25 Dna Packaging
Protein From Herpes Simplex Virus Type 1
Length = 447
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 5 CGVECVFVLGFARWMWKRCTHVGSDDSATWPAATAEEFEAVPRVCRLILAVYETDLHNPQ 64
C V C+++L R TH +DDS P + +PR + AV T+ PQ
Sbjct: 101 CAVLCLYLL-------YRNTHGAADDSDRAPVTFGDLLGRLPRYLACLAAVIGTEGGRPQ 153
Query: 65 F 65
+
Sbjct: 154 Y 154
>pdb|2XQB|L Chain L, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 211
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 84 YEQTLGRAPPYLIYTDHDKKEIV--------------LAIRGLNLAKESDYKLL-LDNRL 128
Y+Q G AP LIY D + V LAI GL E+DY D L
Sbjct: 33 YQQLPGTAPKLLIYRDRRRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAWYDREL 92
Query: 129 GRQMFDGG 136
+F GG
Sbjct: 93 SEWVFGGG 100
>pdb|1J7M|A Chain A, The Third Fibronectin Type Ii Module From Human Matrix
Metalloproteinase 2
Length = 72
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 4 SCGVECVFVLGFARWMWKRCTHVGSDDSATWPAATA 39
S G CVF F ++ CT G D W A TA
Sbjct: 18 SGGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTA 53
>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
Globiformis I42
pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
Acarbose
Length = 1020
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 106 VLAIRGLNLAKESDYKLLLDNRLGRQMFDGGFVHHGLLKSALWLLNQEGDTLRRLWEENG 165
+ G+ L E+ + +LL N++GR D GF + L +A +L+ T + WEE G
Sbjct: 377 TIGQNGIQL-DETAFPILLANQIGRT--DAGFYRNELKPAADYLVAAGPKTPQERWEETG 433
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 FPPAGGYKLNPDWVVKRVAYEQTLGR 90
F P GG +NP W V + +E+T+G
Sbjct: 9 FDPFGGESINPAWEVAKSLHEKTIGE 34
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 191 NHRDKLGGIPRNKVRCHAVAPARCM----SLNLAVKYADVINSVILQDDFLPRTPTPLED 246
++ D + G+ R R HA+ + S+ A KY D++ SV+ DF P T D
Sbjct: 119 DYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV-AIDFTPYIETEALD 177
Query: 247 IFKS 250
++
Sbjct: 178 ALEA 181
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 6 GVECVFVLGFARWMWKRCTHVGSDDSATWPAATA 39
G CVF F ++ CT G D W A TA
Sbjct: 315 GAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTA 348
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 6 GVECVFVLGFARWMWKRCTHVGSDDSATWPAATA 39
G CVF F ++ CT G D W A TA
Sbjct: 317 GAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTA 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,828,186
Number of Sequences: 62578
Number of extensions: 494964
Number of successful extensions: 1264
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 14
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)